Citrus Sinensis ID: 012349
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | 2.2.26 [Sep-21-2011] | |||||||
| Q8S0G4 | 456 | Probable glycerol-3-phosp | yes | no | 0.972 | 0.991 | 0.838 | 0.0 | |
| Q8S2G5 | 467 | Probable glycerol-3-phosp | no | no | 0.954 | 0.950 | 0.840 | 0.0 | |
| O22216 | 462 | Glycerol-3-phosphate dehy | yes | no | 0.974 | 0.980 | 0.841 | 0.0 | |
| Q65X70 | 465 | Probable glycerol-3-phosp | no | no | 0.935 | 0.935 | 0.832 | 0.0 | |
| Q3V7H1 | 357 | Glycerol-3-phosphate dehy | yes | no | 0.516 | 0.672 | 0.324 | 8e-14 | |
| B3EI28 | 333 | Glycerol-3-phosphate dehy | yes | no | 0.548 | 0.765 | 0.261 | 1e-13 | |
| Q0SE35 | 335 | Glycerol-3-phosphate dehy | yes | no | 0.604 | 0.838 | 0.259 | 2e-13 | |
| A5FPU2 | 359 | Glycerol-3-phosphate dehy | yes | no | 0.552 | 0.715 | 0.267 | 4e-13 | |
| C4LJE8 | 332 | Glycerol-3-phosphate dehy | yes | no | 0.625 | 0.876 | 0.244 | 4e-13 | |
| Q8KG76 | 333 | Glycerol-3-phosphate dehy | yes | no | 0.520 | 0.726 | 0.278 | 5e-13 |
| >sp|Q8S0G4|GPDH1_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic OS=Oryza sativa subsp. japonica GN=Os01g0939600 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/453 (83%), Positives = 416/453 (91%), Gaps = 1/453 (0%)
Query: 11 SLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
S+ NG ++ NG+ EERLDELRRL+GK++GD L+IVG+GAGAWGSVF A+LQD+YG R
Sbjct: 4 SVHVNGSVNGGNGT-EERLDELRRLLGKSDGDLLKIVGIGAGAWGSVFAALLQDAYGRFR 62
Query: 71 DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
+KV IRIWRR GRSVDR TAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct: 63 EKVQIRIWRRAGRSVDRTTAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADE 122
Query: 131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
IL+DGFCLNMIDTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERI+V
Sbjct: 123 ILRDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERISV 182
Query: 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
PVIISLAKG+EA L+ +PRIITPTQMI+ ATGVP ENILYLGGPNIASEIYNKEYANARI
Sbjct: 183 PVIISLAKGIEASLDPIPRIITPTQMISSATGVPTENILYLGGPNIASEIYNKEYANARI 242
Query: 251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
CG+ KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV
Sbjct: 243 CGSNKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 302
Query: 311 YFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSI 370
YFAHCTSEM+FITHLL E+PEKLAGPLLADTYVTLLKGRNAWYGQ LAKG L+ D+GDSI
Sbjct: 303 YFAHCTSEMIFITHLLTEQPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGDSI 362
Query: 371 KGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 430
KGKGMIQGISAV AF+ELLSQ SLSV HPEENK VA ELCPILK LY+ILI RE +
Sbjct: 363 KGKGMIQGISAVGAFFELLSQPSLSVQHPEENKQVAPAELCPILKRLYRILIKRELSTRD 422
Query: 431 ILEALRDETMNDPRDRIEIAQTHVFYRPSLLGQ 463
IL+ALRDETMNDPR+RIE+AQ+H FYRPSLLG+
Sbjct: 423 ILQALRDETMNDPRERIEMAQSHAFYRPSLLGK 455
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May be involved in cell redox homeostasis. Oryza sativa subsp. japonica (taxid: 39947) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8 |
| >sp|Q8S2G5|GPDH2_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 2, cytosolic OS=Oryza sativa subsp. japonica GN=Os01g0801600 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/445 (84%), Positives = 414/445 (93%), Gaps = 1/445 (0%)
Query: 20 HTNG-SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW 78
H NG ++EE+LDELRRL+GKA+GDPLRIVGVGAGAWGSVF A++QD+YG+LRDKV +RIW
Sbjct: 16 HGNGATVEEKLDELRRLLGKADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIW 75
Query: 79 RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCL 138
RRPGR+VDRATAEHLFEVIN+REDVLRRLIRRCAYLKYVE RLGDRTL+ADEIL+DGFCL
Sbjct: 76 RRPGRAVDRATAEHLFEVINAREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCL 135
Query: 139 NMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198
NMIDTPLCPLKVVTNLQEAVWDADIVINGLPST+T+EVF EI RYWKERIT P+I+SLAK
Sbjct: 136 NMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAK 195
Query: 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRK 258
G+EA L+ +PRIITPTQMI+ ATGVP+ENILYLGGPNIASEIYNKEYANARICGA+KWRK
Sbjct: 196 GIEASLDPLPRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRK 255
Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSE 318
PLAKFLR+PHF VWDN DL+THEVMGGLKNVYAIGAGMVAALTNESATSKSVYFA CTSE
Sbjct: 256 PLAKFLRQPHFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSE 315
Query: 319 MVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQG 378
M++ITHLL EEPEKLAGPLLADTYVTLLKGRNAWYGQ+LAKG LTL++GDSIKGKG IQG
Sbjct: 316 MIYITHLLEEEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQG 375
Query: 379 ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDE 438
+SAV AFYELLSQ SLSV+HPE N+ VA VE+CPILK LYKILI RE P +IL+A+RDE
Sbjct: 376 VSAVNAFYELLSQDSLSVMHPEANRSVAPVEMCPILKALYKILIKRELPPDSILQAIRDE 435
Query: 439 TMNDPRDRIEIAQTHVFYRPSLLGQ 463
TM DPR+RIE+AQ H YRPSLLGQ
Sbjct: 436 TMYDPRERIEMAQGHSLYRPSLLGQ 460
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May be involved in cell redox homeostasis. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|O22216|GPDHC_ARATH Glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic OS=Arabidopsis thaliana GN=GPDHC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/453 (84%), Positives = 414/453 (91%)
Query: 11 SLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
SL SNG +HH +LEE+LDE RRL+GK+E DPLRIV VGAGAWGSVF A+LQ+SYG R
Sbjct: 9 SLQSNGSVHHIGLNLEEKLDEFRRLLGKSEKDPLRIVSVGAGAWGSVFAALLQESYGGFR 68
Query: 71 DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
DK IRIWRR GR+VDR TAEHLFEVINSRED+LRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct: 69 DKFQIRIWRRAGRAVDRETAEHLFEVINSREDILRRLIRRCAYLKYVEARLGDRTLYADE 128
Query: 131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
ILKDGFCLNM+DTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERITV
Sbjct: 129 ILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERITV 188
Query: 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
P+IISL+KG+E LE VP IITPT+MI++ATGVPI+N+LYLGGPNIA+EIYNKEYANARI
Sbjct: 189 PIIISLSKGIETALEPVPHIITPTKMIHQATGVPIDNVLYLGGPNIAAEIYNKEYANARI 248
Query: 251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
CGA KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV
Sbjct: 249 CGAAKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 308
Query: 311 YFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSI 370
YFAHCTSEM+FITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQ LAKG + D+GDSI
Sbjct: 309 YFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEINRDMGDSI 368
Query: 371 KGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 430
GKGMIQG+SAV AFY+LLSQSSLS+L EE KPVA VE CPILK LYKILI RE QA
Sbjct: 369 SGKGMIQGVSAVGAFYQLLSQSSLSILPSEEKKPVAPVESCPILKTLYKILITREQSTQA 428
Query: 431 ILEALRDETMNDPRDRIEIAQTHVFYRPSLLGQ 463
IL+ALRDET+NDPRDRIEIAQ+H FYRPSLLGQ
Sbjct: 429 ILQALRDETLNDPRDRIEIAQSHAFYRPSLLGQ 461
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Involved in cell redox homeostasis. Required for maintaining a steady state cellular NADH/NAD(+) ratio through a mitochondrial glycerol-3-phosphate redox shuttle. May function with the mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase SDP6 to shuttle reducing equivalents into the mitochondria for respiration. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q65X70|GPDH3_ORYSJ Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 3, cytosolic OS=Oryza sativa subsp. japonica GN=Os05g0495700 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/435 (83%), Positives = 397/435 (91%)
Query: 28 RLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87
+LDELRR MGKA+GD LRIVGVG GAWGS F A+LQD+YG RDK +R+WRRPGR+VDR
Sbjct: 22 KLDELRRRMGKADGDLLRIVGVGGGAWGSAFCALLQDAYGRHRDKAQVRVWRRPGRAVDR 81
Query: 88 ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCP 147
ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTL+ADEIL+DGFCLNM+DTPLCP
Sbjct: 82 ATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLYADEILRDGFCLNMVDTPLCP 141
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
LKVVTNLQEAVWDADIVINGLPSTET+EVF EI RYWKERI PVIISLAKG+EA ++ V
Sbjct: 142 LKVVTNLQEAVWDADIVINGLPSTETREVFGEIGRYWKERIRPPVIISLAKGIEASIDPV 201
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRP 267
PRIITPTQMI+ ATGVP+ENILYLGGPNIASEIYNKEYANARICGA+KWRKPLAKFLR+P
Sbjct: 202 PRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQP 261
Query: 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLA 327
HF VWDN DL+THEVMGGLKN+YAIGAGMVAALTNESATSKSVYF+ CTSEM++ITHLLA
Sbjct: 262 HFIVWDNSDLITHEVMGGLKNIYAIGAGMVAALTNESATSKSVYFSLCTSEMIYITHLLA 321
Query: 328 EEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYE 387
E+PEKLAGPLLADTYVTLLKGRNAWYGQ+LAKG LTL++GDSIKGKG IQG+SAV AFYE
Sbjct: 322 EDPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVHAFYE 381
Query: 388 LLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDETMNDPRDRI 447
LLSQSSLSV HPE K VA VELCPILK LYKILI RE +IL+A+RDE+M DPR+RI
Sbjct: 382 LLSQSSLSVTHPEVKKLVAPVELCPILKTLYKILIKRELATDSILQAIRDESMYDPRERI 441
Query: 448 EIAQTHVFYRPSLLG 462
E++Q YRPSLLG
Sbjct: 442 EMSQRQCLYRPSLLG 456
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May be involved in cell redox homeostasis. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 |
| >sp|Q3V7H1|GPDA_ACIAD Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Acinetobacter sp. (strain ADP1) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 119/262 (45%), Gaps = 22/262 (8%)
Query: 128 ADEILKDGFCLNMI-DTPLCP-LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185
ADEI + F + D L P LK V++L+ AV D DI+ +PS +EV ++IS Y
Sbjct: 56 ADEINQTHFNQRYLPDFNLEPELKAVSDLELAVRDRDIIFVAIPSHSFREVVKQISPY-- 113
Query: 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY 245
IT I+SL KG+EA + I ++ GV L GPN+A EI
Sbjct: 114 --ITAQAIVSLTKGIEANTFSFMSDIIREELPEVPYGV-------LSGPNLAKEIVAGMP 164
Query: 246 ANARICG-AEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNES 304
+ I +E R + L F V+ + D+ E+ G LKN+YAI GM AA N
Sbjct: 165 SGTVIASDSELVRYAVQHALHSALFRVFGSDDVHGVELGGALKNIYAIAMGMAAAY-NIG 223
Query: 305 ATSKSVYFAHCTSEMVFITHLLAEEPEKLAG-PLLADTYVTLLK--GRNAWYGQELAKGR 361
+KS+ +EM L P G + D + T RN G L G+
Sbjct: 224 ENTKSMIITRALAEMSRFAVKLGANPLTFLGLSGVGDLFATCNSPLSRNYQIGYALGSGK 283
Query: 362 LTLDLGDSIKGKGMI-QGISAV 382
TLD +IK G +GI+ +
Sbjct: 284 -TLD--QAIKALGQTAEGINTI 302
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Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|B3EI28|GPDA_CHLL2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 136/306 (44%), Gaps = 51/306 (16%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE---- 203
L+V T+L EAV AD+V+ +PS +E E+I + VI+++AKG+E +
Sbjct: 58 LRVFTSLHEAVSPADMVVTAVPSQALRETVEQIRDLPMQG---RVIVNVAKGIELKTGKR 114
Query: 204 -----LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRK 258
LEA+P GV I + L GP+ A E+ +KE + +
Sbjct: 115 MSEVLLEALP-------------GVRISGVAALYGPSHAEEV-SKEQPTTVVASSPSVET 160
Query: 259 P--LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCT 316
+ + F V+ N D++ E+ G +KN+ AI AG+ + +K+
Sbjct: 161 ANRVQEVFHTSMFRVYTNTDIIGVEIAGSVKNIIAIAAGISDGI-GYGDNAKAAIITRGL 219
Query: 317 SEMVFITHLLAEEPEKLAG-PLLADTYVTLLK--GRNAWYGQELAKGRLTLDLGDSIKGK 373
+EM + L +P ++G + D VT L RN + G+E+ +GR L D +
Sbjct: 220 AEMSRLAVSLGGDPVTVSGLAGIGDLVVTCLSRHSRNRYVGEEIGRGR---SLDDVVAHM 276
Query: 374 GMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAIL 432
M+ +G+ KA Y+L + + PI + +Y++L + QAIL
Sbjct: 277 NMVAEGVFTSKAVYDLSRTKGVEM---------------PITQAVYEMLFEGKPVQQAIL 321
Query: 433 EALRDE 438
+ + E
Sbjct: 322 DLMTRE 327
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Chlorobium limicola (strain DSM 245 / NBRC 103803) (taxid: 290315) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|Q0SE35|GPDA1_RHOSR Glycerol-3-phosphate dehydrogenase [NAD(P)+] 1 OS=Rhodococcus sp. (strain RHA1) GN=gpsA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/354 (25%), Positives = 148/354 (41%), Gaps = 73/354 (20%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102
P+R+V +GAG+WG+ + + L +W R + D EH NSR
Sbjct: 4 PVRVVVLGAGSWGTTVAGLAAHNTPTL-------LWARNSDTADEINNEHR----NSR-- 50
Query: 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDAD 162
LGDR L ++ +L EA +AD
Sbjct: 51 -----------------YLGDRPLPDS------------------MRSTADLVEAAHEAD 75
Query: 163 IVINGLPSTETKEVFEEIS---RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINR 219
+++ G+PS + +I+ R W VPV+ SLAKG+E + PT++I
Sbjct: 76 VLVVGVPSHAVRSTLAQIANEVRAW-----VPVL-SLAKGLEPGTR-----LRPTEVI-- 122
Query: 220 ATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--KPLAKFLRRPHFTVWDNGDL 277
A +P + L GPNIA EI + A A + + R L F V+ N D+
Sbjct: 123 AECLPGHPVGLLAGPNIAREIVDG-LAAASVVATQDVRVATALQPLFASAVFRVYRNTDV 181
Query: 278 VTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG-P 336
+ E+ G LKN+ AI +GM L + ++++ A +EM + + P AG
Sbjct: 182 LGCELGGVLKNIVAIASGMADGL-DVGDNTRAMVLARGLAEMTRLGEAMGANPRTFAGLT 240
Query: 337 LLADTYVTLL--KGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYEL 388
+ D T + RN G+ +A+G +T+D + G+ + +G+ EL
Sbjct: 241 GVGDLIATCMSPSSRNRRVGEYIARG-MTVDEAVAKLGQ-VAEGVKTAPTVMEL 292
|
Rhodococcus sp. (strain RHA1) (taxid: 101510) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|A5FPU2|GPDA_DEHSB Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Dehalococcoides sp. (strain BAV1) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 128/288 (44%), Gaps = 31/288 (10%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE-AELEA 206
+ V +L+EA+ AD+V+ +PS + ++ + + +I S AKG+E +
Sbjct: 60 MNVTASLEEAIAGADMVLLAVPSQRMRPNIRLVAPLLTKSM---LICSAAKGLEIGTAKR 116
Query: 207 VPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLR 265
+ ++IT + A +NI L GPN+A EI A + EK K AK +
Sbjct: 117 MSQVITDEISPDFA-----KNICVLSGPNLAMEILKGLPAVTVLAADTEKTAKKAAKLIT 171
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL 325
+F+ + N D++ E+ G LKN+ A+GAG+V L N +KS +E+ +
Sbjct: 172 AANFSAYTNTDIIGVELGGSLKNIIALGAGIVDGL-NLGNNAKSALITRGLTEISALGAA 230
Query: 326 LAEEPEKLAG-PLLADTYVTLLK--GRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAV 382
L P L+G L D T RN + G EL KGR D+ ++ + +G+S
Sbjct: 231 LGANPLTLSGLAGLGDLIATCSSNLSRNHFVGVELTKGRSLNDIMYNM--SNVAEGVSTT 288
Query: 383 KAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 430
YE+ L + P+ + +Y +L P +A
Sbjct: 289 AVAYEMARSMDLEM---------------PVTENIYNVLYNNADPKEA 321
|
Dehalococcoides sp. (strain BAV1) (taxid: 216389) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|C4LJE8|GPDA_CORK4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 151/352 (42%), Gaps = 61/352 (17%)
Query: 49 VGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108
+GAG+WG+ T + D+ +R+W R D E+ ++R
Sbjct: 7 MGAGSWGTTMTKVFADAGNT------VRLWARRDEVAD--------EIQSTR-------- 44
Query: 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL 168
R YL V ++ D + ++ + A+ DADIV+ G+
Sbjct: 45 RNQCYLPGV-------------VIPDA------------VTATSDPRVALTDADIVVLGV 79
Query: 169 PSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228
PS V + ++R+ +I+SL KG+E + R+ +++I A+G P E I
Sbjct: 80 PS---HAVRDSLTRWRDFLPDDALIVSLPKGLE--RDTARRM---SEVIAEASGRPSEKI 131
Query: 229 LYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLK 287
L GPN+A E+ +++ A + C K + + +F + N D++ E+ G K
Sbjct: 132 AVLSGPNLAKEVADEQPAATVVACTDHDSAKRVQEACTTAYFRPYTNTDVIGCEIGGVAK 191
Query: 288 NVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG-PLLADTYVTLL 346
NV A+ AGM AA N + + +E V + L P +G L D T
Sbjct: 192 NVIALAAGM-AAGQNLGFNTAATIITRGLAETVRLGTALGANPATFSGLAGLGDLVATCN 250
Query: 347 K--GRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSV 396
RN +G+ L++G + ++ G+ + +G++A +A L S+ V
Sbjct: 251 SPLSRNRTFGEHLSQGMSLEEAQEACHGQ-VAEGVNACRAIQSLARAHSVDV 301
|
Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) (taxid: 645127) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
| >sp|Q8KG76|GPDA_CHLTE Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=gpsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 133/287 (46%), Gaps = 45/287 (15%)
Query: 148 LKVVTNLQEAVWDADIVINGLPS---TETKEVFEEISRYWKERITVPVIISLAKGVEAE- 203
L+VV NL +AV A++++ +PS ET F + K +I+++AKG+E
Sbjct: 58 LRVVENLHDAVETAEMIVTAVPSHALRETAAAFAHLPLDGK------IIVNVAKGIEQHT 111
Query: 204 --------LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AE 254
LEA+PRI E I L GP+ A E+ ++ C +E
Sbjct: 112 GKRMSEVLLEALPRIAP-------------EQIAVLYGPSHAEEVARQQPTTVVACSVSE 158
Query: 255 KWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAH 314
+ + + F V+ N DL+ E+ G +KNV AI AG+ L +K+
Sbjct: 159 ATARRVQEAFHTSSFRVYVNTDLIGVEIAGSVKNVIAIAAGISDGL-GFGDNAKAAIITR 217
Query: 315 CTSEMVFITHLLAEEPEKLAG-PLLADTYVTLLK--GRNAWYGQELAKGRLTLD--LGD- 368
+E+ ++ L +P L+G + D VT L RN + G+++ KGR LD +G+
Sbjct: 218 GLAEISRLSSKLGADPLTLSGLSGIGDLVVTCLSQHSRNRYVGEQIGKGR-KLDEVIGEM 276
Query: 369 SIKGKGMIQGISAVKAFYEL-----LSQSSLSVLHPEENKPVATVEL 410
S+ +G++ + VK L +SQ+ +L+ + P A +EL
Sbjct: 277 SMVAEGVLTSKAVVKLAERLGVEMPISQAVYEMLYENKPAPQAILEL 323
|
Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 4 |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 465 | ||||||
| TAIR|locus:2062734 | 462 | GPDHC1 [Arabidopsis thaliana ( | 0.974 | 0.980 | 0.821 | 1e-201 | |
| TAIR|locus:2077387 | 466 | AT3G07690 [Arabidopsis thalian | 0.924 | 0.922 | 0.809 | 8.3e-193 | |
| UNIPROTKB|P95113 | 334 | gpsA "Glycerol-3-phosphate deh | 0.539 | 0.751 | 0.245 | 3.3e-12 | |
| TIGR_CMR|DET_1397 | 359 | DET_1397 "glycerol-3-phosphate | 0.509 | 0.660 | 0.278 | 7.1e-12 | |
| UNIPROTKB|I3LLU0 | 351 | GPD1L "Uncharacterized protein | 0.494 | 0.655 | 0.275 | 4.4e-11 | |
| MGI|MGI:1289257 | 351 | Gpd1l "glycerol-3-phosphate de | 0.496 | 0.658 | 0.272 | 4.9e-11 | |
| TIGR_CMR|BA_1526 | 340 | BA_1526 "glycerol-3-phosphate | 0.492 | 0.673 | 0.243 | 5e-11 | |
| UNIPROTKB|F1P0W8 | 380 | GPD1L "Uncharacterized protein | 0.494 | 0.605 | 0.275 | 7e-11 | |
| RGD|1560123 | 351 | Gpd1l "glycerol-3-phosphate de | 0.494 | 0.655 | 0.275 | 8.4e-11 | |
| UNIPROTKB|F1NFY2 | 352 | GPD1 "Uncharacterized protein" | 0.565 | 0.747 | 0.255 | 8.6e-11 |
| TAIR|locus:2062734 GPDHC1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1952 (692.2 bits), Expect = 1.0e-201, P = 1.0e-201
Identities = 372/453 (82%), Positives = 404/453 (89%)
Query: 11 SLSSNGLIHHTNGSXXXXXXXXXXXMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR 70
SL SNG +HH + +GK+E DPLRIV VGAGAWGSVF A+LQ+SYG R
Sbjct: 9 SLQSNGSVHHIGLNLEEKLDEFRRLLGKSEKDPLRIVSVGAGAWGSVFAALLQESYGGFR 68
Query: 71 DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADE 130
DK IRIWRR GR+VDR TAEHLFEVINSRED+LRRLIRRCAYLKYVEARLGDRTL+ADE
Sbjct: 69 DKFQIRIWRRAGRAVDRETAEHLFEVINSREDILRRLIRRCAYLKYVEARLGDRTLYADE 128
Query: 131 ILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITV 190
ILKDGFCLNM+DTPLCPLKVVTNLQEAVWDADIV+NGLPSTET+EVFEEIS+YWKERITV
Sbjct: 129 ILKDGFCLNMVDTPLCPLKVVTNLQEAVWDADIVVNGLPSTETREVFEEISKYWKERITV 188
Query: 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI 250
P+IISL+KG+E LE VP IITPT+MI++ATGVPI+N+LYLGGPNIA+EIYNKEYANARI
Sbjct: 189 PIIISLSKGIETALEPVPHIITPTKMIHQATGVPIDNVLYLGGPNIAAEIYNKEYANARI 248
Query: 251 CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 310
CGA KWRKPLAKFLR+PHF VWDN DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV
Sbjct: 249 CGAAKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSV 308
Query: 311 YFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSI 370
YFAHCTSEM+FITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQ LAKG + D+GDSI
Sbjct: 309 YFAHCTSEMIFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGEINRDMGDSI 368
Query: 371 KGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 430
GKGMIQG+SAV AFY+LLSQSSLS+L EE KPVA VE CPILK LYKILI RE QA
Sbjct: 369 SGKGMIQGVSAVGAFYQLLSQSSLSILPSEEKKPVAPVESCPILKTLYKILITREQSTQA 428
Query: 431 ILEALRDETMNDPRDRIEIAQTHVFYRPSLLGQ 463
IL+ALRDET+NDPRDRIEIAQ+H FYRPSLLGQ
Sbjct: 429 ILQALRDETLNDPRDRIEIAQSHAFYRPSLLGQ 461
|
|
| TAIR|locus:2077387 AT3G07690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1868 (662.6 bits), Expect = 8.3e-193, P = 8.3e-193
Identities = 356/440 (80%), Positives = 395/440 (89%)
Query: 36 MGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFE 95
MGKA+ DPLRIVGVGAGAWGSVF AMLQ++YG R KV +RIWRR GR++D+ATAEHLFE
Sbjct: 27 MGKADDDPLRIVGVGAGAWGSVFIAMLQENYGKFRGKVSVRIWRRGGRAIDKATAEHLFE 86
Query: 96 VINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ 155
VINSRE++LRRLIRRCAYLKYVEARLGDR L+ADEILKDGFCLNMI+TPLCPLKVVTNLQ
Sbjct: 87 VINSREELLRRLIRRCAYLKYVEARLGDRVLYADEILKDGFCLNMIETPLCPLKVVTNLQ 146
Query: 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQ 215
EAVWDADIVINGLPSTET +VF EIS+YWKER+ PVIISLAKGVEAE E PRI+TPTQ
Sbjct: 147 EAVWDADIVINGLPSTETFQVFNEISKYWKERVNAPVIISLAKGVEAEFEPHPRIVTPTQ 206
Query: 216 MINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275
MI+RATG+P+ENILYLGGPNIASE+YNKEYANARICG+EKWRKPL KFLR+ HF VWDN
Sbjct: 207 MIHRATGIPLENILYLGGPNIASEVYNKEYANARICGSEKWRKPLGKFLRQSHFIVWDNS 266
Query: 276 DLVTHEVMGGLKNVYAIGA----------GMVAALTNESATSKSVYFAHCTSEMVFITHL 325
DL+THEVMGGLKNVYAIGA GMVA LT ESATSKSVYFAHCTSEM+FITHL
Sbjct: 267 DLITHEVMGGLKNVYAIGAVFVLAFLYSTGMVATLTKESATSKSVYFAHCTSEMIFITHL 326
Query: 326 LAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAF 385
LA+EPEKLAGPLLADTYVTLLKGRNAWYGQ+LAKG L+L++GDSIKGKGMIQG+SAVKAF
Sbjct: 327 LAKEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELSLEMGDSIKGKGMIQGVSAVKAF 386
Query: 386 YELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDETMNDPRD 445
+ELL+QSSLS+ HPEE KPV ELCPILKMLY+ILI RE +AILEALRDETMNDPR+
Sbjct: 387 FELLNQSSLSLQHPEEGKPVTPAELCPILKMLYRILITREFSCEAILEALRDETMNDPRE 446
Query: 446 RIEIAQTHVFYRPSLLGQLP 465
IEIA +H+F++P LLGQ P
Sbjct: 447 LIEIAHSHLFFQPWLLGQKP 466
|
|
| UNIPROTKB|P95113 gpsA "Glycerol-3-phosphate dehydrogenase [NAD(P)+]" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 66/269 (24%), Positives = 121/269 (44%)
Query: 128 ADEILKDGFCLNMIDTPLCP--LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185
AD+I + + + L P + + +EA+ A V+ G+P+ + E +
Sbjct: 41 ADQINTTRYNPDYLPGALLPPSIHATADAEEALGGASTVLLGVPAQTMRANLERWAPLLP 100
Query: 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY 245
E T ++SLAKG+E L + R+ +Q+I TG + + GPN+ASEI +
Sbjct: 101 EGAT---LVSLAKGIE--LGTLMRM---SQVIISVTGAEPPQVAVISGPNLASEIAECQP 152
Query: 246 ANARICGAEKWRK-PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNES 304
A + ++ R L + L +F + N D+V E+ G KN+ A+ GM +
Sbjct: 153 AATVVACSDSGRAVALQRALNSGYFRPYTNADVVGTEIGGACKNIIALACGMAVGIGLGE 212
Query: 305 ATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPL-LADTYVTLL--KGRNAWYGQELAKGR 361
T+ ++ +E++ + L LAG + D T + RN +G+ L +G
Sbjct: 213 NTAAAI-ITRGLAEIIRLGTALGANGATLAGLAGVGDLVATCTSPRSRNRSFGERLGRGE 271
Query: 362 LTLDLGDSIKGKGMIQGISAVKAFYELLS 390
G K +++G+++ ++ L S
Sbjct: 272 TLQSAG---KACHVVEGVTSCESVLALAS 297
|
|
| TIGR_CMR|DET_1397 DET_1397 "glycerol-3-phosphate dehydrogenase, NAD-dependent" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 187 (70.9 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 71/255 (27%), Positives = 115/255 (45%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
L V +L+EA+ AD+V+ +PS + + + + ++ S +KG+E +
Sbjct: 60 LNVTASLEEALSGADMVLMAVPSQRMRPNIRLAAPLLTKNM---LVCSASKGLE--IGTA 114
Query: 208 PRIITPTQMINRATGVPI-ENILYLGGPNIASEIYNKEYANARICGA--EKWRKPLAKFL 264
R+ +Q+I +NI L GPN+A EI K + A EK K AK +
Sbjct: 115 KRM---SQVIADEISPDFSQNICVLSGPNLAMEIL-KGLPAVTVLAADTEKTAKKAAKLV 170
Query: 265 RRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITH 324
+F + N D++ E+ G LKN+ A+GAG+ L+ + +KS +E+ +
Sbjct: 171 TASNFCAYTNTDIIGVELGGSLKNIIALGAGIADGLSFGN-NAKSALITRGLTEISALGA 229
Query: 325 LLAEEPEKLAGPL-LADTYVTLLKG--RNAWYGQELAKGRLTLDLGDSIKGKGMIQGISA 381
L P +G L D T RN + G EL KGR D+ S+ + +G+S
Sbjct: 230 ALGANPLTFSGLAGLGDLIATCSSNLSRNHFVGVELTKGRSLNDIMYSMSN--VAEGVST 287
Query: 382 VKAFYELLSQSSLSV 396
YEL L +
Sbjct: 288 TAVAYELARSMDLEM 302
|
|
| UNIPROTKB|I3LLU0 GPD1L "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 165 (63.1 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 70/254 (27%), Positives = 113/254 (44%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
V NL EAV DAD+++ +P + +EI+ R K+ + I+L KG++ E +
Sbjct: 78 VANLGEAVKDADLLVFVIPHQFIHRICDEITGRVPKDALG----ITLIKGIDEGPEGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIA+E+ ++ I G++ L + L+ P
Sbjct: 134 I---SDIIREKMGIDISVLM---GANIANEVAAGKFCETTI-GSKVMENGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL 325
+F TV D+ D V E+ G LKN+ A+GAG L T K+ EM+ +
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNT-KAAVIRLGLMEMIAFARI 243
Query: 326 LAEEPEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGIS 380
+ A L +AD T GRN + A+ G+ +L + +QG
Sbjct: 244 FCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKEMLNGQKLQGPQ 303
Query: 381 AVKAFYELLSQSSL 394
Y +L Q L
Sbjct: 304 TAAEVYRILKQKGL 317
|
|
| MGI|MGI:1289257 Gpd1l "glycerol-3-phosphate dehydrogenase 1-like" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 169 (64.5 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 69/253 (27%), Positives = 115/253 (45%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V NL EAV DAD+++ +P ++ +EI+ E+ + I+L KG++ + + I
Sbjct: 78 VPNLSEAVQDADLLVFVIPHQFIHKICDEITGRVPEKA---LGITLIKGIDEGPDGLKLI 134
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRPH 268
+ +I G+ I ++ G NIASE+ +++ I G++ + L + L+ P+
Sbjct: 135 ---SDIIREKMGIDISVLM---GANIASEVAAEKFCETTI-GSKVMQNGLLFKELLQTPN 187
Query: 269 F--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLL 326
F TV D+ D V E+ G LKN+ A+GAG L T K+ EM+ +
Sbjct: 188 FRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNT-KAAVIRLGLMEMIAFAKIF 244
Query: 327 AEEPEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISA 381
+ A L +AD T GRN + A+ G+ +L + +QG
Sbjct: 245 CKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFARTGKTIEELEKELLNGQKLQGPQT 304
Query: 382 VKAFYELLSQSSL 394
Y +L Q L
Sbjct: 305 SAEVYRILRQKGL 317
|
|
| TIGR_CMR|BA_1526 BA_1526 "glycerol-3-phosphate dehydrogenase (NAD(P)+)" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 62/255 (24%), Positives = 120/255 (47%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVI-ISLAKGVEAELEAVPRI 210
++L+EA+ D ++V+ +P+ +EV +++ +Y + P I +KG+E RI
Sbjct: 63 SSLEEALVDVNVVLIVVPTKAYREVLQDMKKY----VAGPTTWIHASKGIEPGTSK--RI 116
Query: 211 ITPTQMINRATGVP---IENILYLGGPNIASEIYNKEYANARICGAEKWR--KPLAKFLR 265
+++I +P I++++ L GP+ A E+ ++ A A++ + +
Sbjct: 117 ---SEVIEEE--IPEDLIKDVVVLSGPSHAEEVGLRQ-ATTVTSAAKRMEAAEEVQDLFM 170
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL 325
+F V+ N D+V E+ G LKN+ A+ AG+ L +K+ +E+ +
Sbjct: 171 NSYFRVYTNPDIVGVELGGALKNIIALAAGITDGL-GLGDNAKAALMTRGLTEIARLGRK 229
Query: 326 LAEEPEKLAGPL-LADTYVTL--LKGRNAWYGQELAKGRLTLDLGDSIKGKGMI-QGISA 381
+ P AG + D VT + RN G L KG L + ++ GM+ +G+
Sbjct: 230 MGGNPLTFAGLTGMGDLIVTCTSVHSRNWRAGNMLGKGH---SLEEVLESMGMVVEGVRT 286
Query: 382 VKAFYELLSQSSLSV 396
KA +EL + + +
Sbjct: 287 TKAAHELAEKMEVEM 301
|
|
| UNIPROTKB|F1P0W8 GPD1L "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 163 (62.4 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 70/254 (27%), Positives = 114/254 (44%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
V NL EAV DAD+++ +P +V +EI+ R K+ + I+L KG++ E +
Sbjct: 107 VPNLNEAVQDADLLVFVVPHQFIHKVCDEITGRVPKKALG----ITLIKGIDEGPEGLKL 162
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIA+E+ +++ I G++ L + L+ P
Sbjct: 163 I---SDIIREKMGIDISVLM---GANIANEVAAEKFCETTI-GSKILENGLLFKELLQTP 215
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL 325
+F TV D+ D V E+ G LKN+ A+GAG L T K+ EM+ +
Sbjct: 216 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLRCGDNT-KAAVIRLGLMEMIAFARI 272
Query: 326 LAEEPEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGIS 380
+ A L +AD T GRN + K G+ +L + +QG
Sbjct: 273 FCKGQVSTATFLESCGVADLITTCYGGRNRRVAEAFVKTGKSIEELEQEMLNGQKLQGPQ 332
Query: 381 AVKAFYELLSQSSL 394
Y +L Q +
Sbjct: 333 TSAEVYRILKQKGM 346
|
|
| RGD|1560123 Gpd1l "glycerol-3-phosphate dehydrogenase 1-like" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 70/254 (27%), Positives = 116/254 (45%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKGVEAELEAVPR 209
V NL EAV DAD+++ +P ++ +EI+ R K+ + I+L KG++ + +
Sbjct: 78 VPNLGEAVQDADLLVFVIPHQFIHKICDEITGRVPKKAVG----ITLIKGIDEGPDGLKL 133
Query: 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLA--KFLRRP 267
I + +I G+ I ++ G NIASE+ +++ I G++ + L + L+ P
Sbjct: 134 I---SDIIREKMGIDISVLM---GANIASEVAAEKFCETTI-GSKVLQNGLLFKELLQTP 186
Query: 268 HF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL 325
+F TV D+ D V E+ G LKN+ A+GAG L T K+ EM+ +
Sbjct: 187 NFRITVVDDADTV--ELCGALKNIVAVGAGFCDGLCCGDNT-KAAVIRLGLMEMIAFAKI 243
Query: 326 LAEEPEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGIS 380
+ A L +AD T GRN + A+ G+ +L + +QG
Sbjct: 244 FCKGQVSTATFLESCGVADLITTCYGGRNRKVAEAFARTGKTIEELEKELLNGQKLQGPQ 303
Query: 381 AVKAFYELLSQSSL 394
Y +L Q L
Sbjct: 304 TSAEVYRILKQKGL 317
|
|
| UNIPROTKB|F1NFY2 GPD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 75/293 (25%), Positives = 127/293 (43%)
Query: 151 VTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRI 210
V ++ EAV DI++ LP V E+++ + K ISL KGV+ E + I
Sbjct: 79 VPDVAEAVRGTDILVFVLPHQFIGRVCEQMAGHIKPGAFG---ISLIKGVDEGPEGLKLI 135
Query: 211 ITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHF 269
+ +I + I ++ G NIA E+ ++++ I C EK + + L+ P+F
Sbjct: 136 ---SDLIREKLKIEISVLM---GANIAKEVADEKFCETTIGCKNEKQGQIFKELLQTPNF 189
Query: 270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEE 329
+ D T E+ G LKN+ A+GAG L+ T K+ EMV +
Sbjct: 190 RITVVPDTDTVEICGALKNIVAVGAGFCDGLSFGDNT-KAAVIRLGLMEMVAFAQIFCRG 248
Query: 330 PEKLAGPL----LADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISAVKA 384
P ++ L +AD T GRN + A+ G+ +L + + +QG
Sbjct: 249 PVSISTFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEELENEMLNGQKLQGPQTSAE 308
Query: 385 FYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 437
Y++L + ++ +E P+ +YKI ES IQ + L++
Sbjct: 309 VYKILKEKNM-------------LEKFPLFTTIYKICYEGES-IQNFISCLQN 347
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O22216 | GPDHC_ARATH | 1, ., 1, ., 1, ., 8 | 0.8410 | 0.9741 | 0.9805 | yes | no |
| Q65X70 | GPDH3_ORYSJ | 1, ., 1, ., 1, ., 8 | 0.8321 | 0.9354 | 0.9354 | no | no |
| Q8S0G4 | GPDH1_ORYSJ | 1, ., 1, ., 1, ., 8 | 0.8388 | 0.9720 | 0.9912 | yes | no |
| Q8S2G5 | GPDH2_ORYSJ | 1, ., 1, ., 1, ., 8 | 0.8404 | 0.9548 | 0.9507 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
| 4th Layer | 1.1.1.94 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pm.C_2200005 | hypothetical protein (458 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 465 | |||
| pfam07479 | 145 | pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol- | 1e-34 | |
| COG0240 | 329 | COG0240, GpsA, Glycerol-3-phosphate dehydrogenase | 1e-26 | |
| PRK00094 | 325 | PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosp | 5e-20 | |
| PRK12439 | 341 | PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-p | 7e-16 | |
| PTZ00345 | 365 | PTZ00345, PTZ00345, glycerol-3-phosphate dehydroge | 8e-16 | |
| TIGR03376 | 342 | TIGR03376, glycerol3P_DH, glycerol-3-phosphate deh | 3e-15 | |
| pfam01210 | 157 | pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol- | 1e-08 | |
| PRK14619 | 308 | PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-p | 2e-08 | |
| PRK14618 | 328 | PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-p | 3e-08 | |
| PRK14620 | 326 | PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-p | 8e-05 |
| >gnl|CDD|116100 pfam07479, NAD_Gly3P_dh_C, NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 1e-34
Identities = 48/164 (29%), Positives = 65/164 (39%), Gaps = 27/164 (16%)
Query: 276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPE---K 332
D+V E+ G LKNV AI AG++ L +K+ EM+ L PE
Sbjct: 2 DVVGVEIGGALKNVIAIAAGILDGLGFG-DNTKAALITRGLMEMIKFGAALGGGPETFFG 60
Query: 333 LAGPLLADTYVTLL--KGRNAWYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELL 389
LAG L D T GRN G+ L KG+ L + K G +G+ K YEL
Sbjct: 61 LAG--LGDLITTCTSELGRNRRVGEALGKGK---SLEEIEKELGQVAEGVKTAKEVYELA 115
Query: 390 SQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 433
+ L P+ +Y+IL P +AI
Sbjct: 116 KRKGLD---------------FPLFTAVYRILYEGLKPEEAIEY 144
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the C-terminal substrate-binding domain. Length = 145 |
| >gnl|CDD|223318 COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 97/409 (23%), Positives = 165/409 (40%), Gaps = 101/409 (24%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSRE 101
++I +GAG+WG+ +L + G+ +V R+W R E + E+ +RE
Sbjct: 1 MMKIAVIGAGSWGTALAKVLARN-GH---EV--RLWGRDE---------EIVAEINETRE 45
Query: 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA 161
+ YL + L LK T+L EA+ A
Sbjct: 46 NP--------KYLPGIL-------------LPPN------------LKATTDLAEALDGA 72
Query: 162 DIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRAT 221
DI++ +PS +EV ++ + +I+S KG+E E +++I
Sbjct: 73 DIIVIAVPSQALREVLRQLKPLLLKD---AIIVSATKGLEPE-----TGRLLSEIIEEEL 124
Query: 222 GVPIENILYLGGPNIASEIYNKEYANARICGA------EKWRKPLAKFLRRPHFTVWDNG 275
P I L GP+ A E+ A ++ + + P+F V+ +
Sbjct: 125 --PDNPIAVLSGPSFAKEV-----AQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTST 177
Query: 276 DLVTHEVMGGLKNVYAIGAGMVAAL-TNESATSKSVYFAHCTSEMV-FITHLLAEEPEK- 332
D++ E+ G LKNV AI AG+ L ++A K+ +EM L A +PE
Sbjct: 178 DVIGVEIGGALKNVIAIAAGIADGLGLGDNA--KAALITRGLAEMTRLGVALGA-KPETF 234
Query: 333 --LAGPLLADTYVTL--LKGRNAWYGQELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYE 387
L+G L D +T RN +G L +G L L ++++ G ++G+ KA YE
Sbjct: 235 MGLSG--LGDLILTCTSPLSRNRRFGLLLGQG---LSLDEALEEIGQVVEGVRTAKAVYE 289
Query: 388 LLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALR 436
L + + + PI + +Y++L P +AI E +
Sbjct: 290 LAKKLGIEM---------------PITEAVYRVLYEGLDPKEAIEELMG 323
|
Length = 329 |
| >gnl|CDD|234629 PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 90.1 bits (225), Expect = 5e-20
Identities = 95/423 (22%), Positives = 153/423 (36%), Gaps = 146/423 (34%)
Query: 49 VGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108
+GAG+WG+ +L + G+ V +W R E E+ RE+
Sbjct: 7 LGAGSWGTALAIVLARN-GH---DV--TLWAR--------DPEQAAEINADRENP----- 47
Query: 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL 168
YL L D L+ T+L EA+ DAD+++ +
Sbjct: 48 ---RYLP-------------GIKLPDN------------LRATTDLAEALADADLILVAV 79
Query: 169 PSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI 228
PS +EV +++ I+ KG+E ++++ I
Sbjct: 80 PSQALREVLKQLKPLLPPD---APIVWATKGIEPGTGK-----LLSEVLEEELPDL-API 130
Query: 229 LYLGGPNIASEI------------YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276
L GP+ A E+ ++E A + + P+F V+ N D
Sbjct: 131 AVLSGPSFAKEVARGLPTAVVIASTDEELAER-----------VQELFHSPYFRVYTNTD 179
Query: 277 LVTHEVMGGLKNVYAIGAGMV----------AALTNESATSKSVYFAHCTSEMVFITHLL 326
++ E+ G LKNV AI AG+ AAL IT L
Sbjct: 180 VIGVELGGALKNVIAIAAGIADGLGLGDNARAAL---------------------ITRGL 218
Query: 327 AE----------EPEKLAGPLLA---DTYVTL--LKGRNAWYGQELAKGRLTLDLGDSIK 371
AE PE G LA D +T RN +G L +G+ +L+ +++
Sbjct: 219 AEITRLGVALGANPETFLG--LAGLGDLVLTCTSPLSRNRRFGLALGQGK-SLE--EALA 273
Query: 372 GKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQA 430
GM +G+ KA YEL + L VE+ PI + +Y +L + P +A
Sbjct: 274 EIGMVAEGVRTAKAVYELAKK-----LG---------VEM-PITEAVYAVLYEGKDPREA 318
Query: 431 ILE 433
+ +
Sbjct: 319 VED 321
|
Length = 325 |
| >gnl|CDD|171500 PRK12439, PRK12439, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 7e-16
Identities = 70/226 (30%), Positives = 100/226 (44%), Gaps = 18/226 (7%)
Query: 142 DTPLCP-LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200
D L L+ T+ EA AD+V+ G+PS + V E+++ R VPV+ SL KG+
Sbjct: 58 DVVLSDTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKEL--RPWVPVV-SLVKGL 114
Query: 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--K 258
E + +Q+I +P L GPNIA E+ YA A +
Sbjct: 115 EQGTN-----MRMSQIIEEV--LPGHPAGILAGPNIAREVAEG-YAAAAVLAMPDQHLAT 166
Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSE 318
L+ R F V+ D+V E+ G LKNV+AI GM +L T V A E
Sbjct: 167 RLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMV-IARALRE 225
Query: 319 MVFITHLLAEEPEKLAGPL-LADTYVTLL--KGRNAWYGQELAKGR 361
M + + PE AG + D VT + RN G++L G+
Sbjct: 226 MTKLGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQLGAGK 271
|
Length = 341 |
| >gnl|CDD|240373 PTZ00345, PTZ00345, glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 8e-16
Identities = 100/419 (23%), Positives = 171/419 (40%), Gaps = 90/419 (21%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV---LIRIWRRPGRSVDRATAEHLFEVINS 99
PL++ +G+G WGS + ++ R+ + +R+W + E L ++IN+
Sbjct: 11 PLKVSVIGSGNWGSAISKVV--GENTQRNYIFHNEVRMWVLE----EIVEGEKLSDIINT 64
Query: 100 R-EDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV 158
+ E+V YL ++ D I+ V++L+EAV
Sbjct: 65 KHENV--------KYLPGIKL--------PDNIV-----------------AVSDLKEAV 91
Query: 159 WDADIVINGLPSTETKEVFEEISRYWKERITVP---VIISLAKGVEAELEAVPRIITPTQ 215
DAD++I +P + V +I KE + ISL KG+ E P + +
Sbjct: 92 EDADLLIFVIPHQFLESVLSQI----KENNNLKKHARAISLTKGIIVE-NGKPVLCSDV- 145
Query: 216 MINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK-----WRKPLAKFLRRPHFT 270
I G+P L G N+A+++ +E++ A I +K W++ RP+F
Sbjct: 146 -IEEELGIPC---CALSGANVANDVAREEFSEATIGCEDKDDALIWQR----LFDRPYFK 197
Query: 271 VWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEM-----VFITHL 325
+ D++ EV G LKN+ A+ AG L +KS EM +F ++
Sbjct: 198 INCVPDVIGVEVCGALKNIIALAAGFCDGL-GLGTNTKSAIIRIGLEEMKLFGKIFFPNV 256
Query: 326 LAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAK--GRLTLDLGDSIKGKGM-IQGISAV 382
+ E + G LAD T L GRN E AK G+ + + ++ G +QG +
Sbjct: 257 MDETFFESCG--LADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTL 314
Query: 383 KAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDETMN 441
K YE+L H + P+ + YKI P ++++ L +
Sbjct: 315 KEVYEVLES------HDLKK-------EFPLFTVTYKIAFEGADP-SSLIDVLSTNELR 359
|
Length = 365 |
| >gnl|CDD|234190 TIGR03376, glycerol3P_DH, glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 38/295 (12%)
Query: 146 CPLKVVTN--LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203
P +V L EA ADI++ +P + + +++ + K IS KG+E
Sbjct: 66 LPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNA---RAISCIKGLEVS 122
Query: 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-----CGAEKWRK 258
+ V + +I G+P L G N+A+E+ ++++ + + +
Sbjct: 123 KDGV---KLLSDIIEEELGIPCG---VLSGANLANEVAKEKFSETTVGYRDPADFDVDAR 176
Query: 259 PLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSE 318
L RP+F V D+ E+ G LKNV AI AG V L K+ E
Sbjct: 177 VLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNA-KAAVMRRGLLE 235
Query: 319 MVFITHLLAEEPE-----KLAGPLLADTYVTLLKGRNAWYGQELAK-GRLTLDLGDSIKG 372
M+ + E + G +AD T L GRN G+ AK G+ +L +
Sbjct: 236 MIKFARMFFPTGEVTFTFESCG--VADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLN 293
Query: 373 KGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESP 427
+QG++ K +ELL + + P+ + +Y+IL P
Sbjct: 294 GQSLQGVATAKEVHELLKNKNK-------------DDEFPLFEAVYQILYEGLPP 335
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. Length = 342 |
| >gnl|CDD|201664 pfam01210, NAD_Gly3P_dh_N, NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-08
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 146 CPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205
L+ T+L+EA+ ADI++ +PS +EV +++ +++SL KG+E
Sbjct: 55 DNLRATTDLEEAIKGADIIVLAVPSQALREVLKQLKGLLSPG---AILVSLTKGIEPGTL 111
Query: 206 AVPRIITPTQMINRATGVPIENILYLGGPNIASEI 240
+ I ++ PI I L GP+ A E+
Sbjct: 112 KLLSEIIEEEL-------PINPIAVLSGPSHAEEV 139
|
NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyzes the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Length = 157 |
| >gnl|CDD|237771 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 71/296 (23%), Positives = 126/296 (42%), Gaps = 48/296 (16%)
Query: 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVP---VIISLAKGVEAELEAVP 208
+L + DAD++++ + + V E++ + + +P +I++ KG++ E
Sbjct: 39 LSLAAVLADADVIVSAVSMKGVRPVAEQV-----QALNLPPETIIVTATKGLDPE----- 88
Query: 209 RIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR-KPLAKFLRRP 267
TP+Q+ A P ++ L GPN++ EI A + + + + +
Sbjct: 89 TTRTPSQIWQAA--FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSE 146
Query: 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL---TNESATSKSVYFAHCTSEMVFITH 324
F V+ N D + E+ G LKNV AI AG+ L TN +K+ EM+ +
Sbjct: 147 RFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTN----AKAALVTRALPEMIRVGT 202
Query: 325 LLAEEPEKL-----AGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGI 379
L + E G LLA L RN G LA+G+ + ++G +G+
Sbjct: 203 HLGAQTETFYGLSGLGDLLATCTSPL--SRNYQVGYGLAQGKSLEQILAELEGTA--EGV 258
Query: 380 SAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEAL 435
+ +L Q +++V PI + +Y++L +P QA LE L
Sbjct: 259 NTANVLVQLAQQQNIAV---------------PITEQVYRLLQGEITPQQA-LEEL 298
|
Length = 308 |
| >gnl|CDD|237770 PRK14618, PRK14618, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 3e-08
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 25/243 (10%)
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAV 207
L + +EA+ AD + +PS +E + R +S AKG+ +
Sbjct: 62 LYPTADPEEALAGADFAVVAVPSKALRETLAGLPR-------ALGYVSCAKGLAPDGG-- 112
Query: 208 PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEK-WRKPLAKFLRR 266
R+ +++ T + L GPN A EI A + E + +
Sbjct: 113 -RLSELARVLEFLTQARV---AVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSG 168
Query: 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMV-FITHL 325
P F V+ + D V E+ G LKNV A+ AGMV L +K+ EMV F L
Sbjct: 169 PSFRVYTSRDRVGVELGGALKNVIALAAGMVDGL-KLGDNAKAALITRGLREMVRFGVAL 227
Query: 326 LAEEPEKLA----GPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISA 381
AEE G L+A RN G+ + +G +D G +++G+
Sbjct: 228 GAEEATFYGLSGLGDLIATATS--PHSRNRAAGEAIVRG---VDREHLEAGGKVVEGLYT 282
Query: 382 VKA 384
VKA
Sbjct: 283 VKA 285
|
Length = 328 |
| >gnl|CDD|173083 PRK14620, PRK14620, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 8e-05
Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 49/269 (18%)
Query: 144 PLCPLK----VVTNLQEAVWD-ADIVINGLPSTETKEVFEEI-SRYWKERITVPVIISLA 197
P C L V + + E + D A +I +P+ + + + +++ + K+ P++I +
Sbjct: 50 PTCHLPDNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKN--TPILIC-S 106
Query: 198 KGVEAELEAVPRIIT---PTQMINRATGVPIENILYLGGPNIASEIYNK-EYANARICGA 253
KG+E + P++++N +P I L GP+ A EI K +
Sbjct: 107 KGIE--------KSSLKFPSEIVNEI--LPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN 156
Query: 254 EKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMV----------AALTNE 303
E L L + + + D++ ++ LKN+ AI G+V AA+ +
Sbjct: 157 ETLGSSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITK 216
Query: 304 SATS-KSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTL--LKGRNAWYGQELAK 359
K++Y A + + + L+ GP L D +T L RN +G ++
Sbjct: 217 GMNEIKTLYSA--KNGSIDLNTLI--------GPSCLGDLILTCTTLHSRNMSFGFKIGN 266
Query: 360 GRLTLDLGDSIKGKGMIQGISAVKAFYEL 388
G + +GK +I+G S VK L
Sbjct: 267 GFNINQILS--EGKSVIEGFSTVKPLISL 293
|
Length = 326 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 100.0 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 100.0 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 100.0 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 100.0 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 100.0 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 100.0 | |
| PF07479 | 149 | NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate | 100.0 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.94 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.93 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.91 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.9 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.89 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.88 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.88 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.85 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.75 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.72 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.7 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.65 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.65 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.63 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.61 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.57 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.56 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.54 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.49 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.48 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.48 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.48 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.46 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.46 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.4 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.39 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.38 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.37 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.37 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.37 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.36 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.35 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.34 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.34 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.34 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.34 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.33 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.32 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.31 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.31 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.3 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.3 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.29 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.29 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 99.27 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.25 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.25 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.25 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.25 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.24 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.21 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.2 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.18 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.17 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.17 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.16 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.14 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.13 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.11 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.11 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.11 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.08 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.04 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.03 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.01 | |
| PLN02256 | 304 | arogenate dehydrogenase | 98.98 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.98 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.95 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 98.94 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.91 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.88 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.87 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.83 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.82 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.81 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.78 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 98.78 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.76 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 98.74 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 98.65 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 98.62 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 98.62 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 98.59 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.58 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.56 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.55 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 98.48 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.38 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.35 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.34 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 98.33 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.27 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.21 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.2 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.18 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.14 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.13 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 98.13 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.12 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.09 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.87 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.86 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.83 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.81 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.8 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.79 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.77 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.76 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 97.7 | |
| PF08546 | 125 | ApbA_C: Ketopantoate reductase PanE/ApbA C termina | 97.7 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 97.7 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.68 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.64 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.59 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 97.55 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.54 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 97.54 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 97.53 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 97.53 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.52 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.51 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.48 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.46 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.46 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.46 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 97.44 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.43 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.41 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.4 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.4 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.38 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.36 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.34 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.31 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.29 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.27 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.23 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.23 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.22 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.2 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 97.18 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.16 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 97.16 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.16 | |
| PLN00106 | 323 | malate dehydrogenase | 97.16 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.16 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 97.15 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.14 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.13 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.13 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.08 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.06 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.06 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.06 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 97.04 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.03 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.02 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.01 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.0 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.0 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.99 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 96.98 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 96.97 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.95 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.95 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.94 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.93 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.88 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 96.87 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.86 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.85 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.85 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 96.84 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 96.82 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.81 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 96.81 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 96.8 | |
| PLN02928 | 347 | oxidoreductase family protein | 96.8 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.79 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.78 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.77 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.75 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.74 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.73 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.71 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.7 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.69 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.69 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.68 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.68 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.68 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.67 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.66 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.65 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.61 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.61 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.59 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 96.55 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.54 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 96.53 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.51 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 96.5 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.46 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.43 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.43 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 96.42 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.4 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.39 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.37 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.36 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.35 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 96.33 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.3 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.22 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.21 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.16 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.15 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.12 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 96.1 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.08 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.08 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.05 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.04 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.02 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.0 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.95 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 95.94 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.92 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 95.88 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.86 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 95.84 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 95.83 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 95.8 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 95.78 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.76 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.73 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.69 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 95.64 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.62 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.59 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.59 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 95.56 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 95.55 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.53 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 95.52 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.52 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.51 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 95.46 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.46 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.43 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.34 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.31 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.3 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.26 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 95.24 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 95.21 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.21 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.12 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.05 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.04 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 95.01 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.98 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 94.98 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 94.96 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 94.92 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.9 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 94.87 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 94.74 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 94.72 | |
| PRK07411 | 390 | hypothetical protein; Validated | 94.7 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.68 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 94.65 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.57 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.53 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 94.45 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 94.44 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 94.23 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 94.23 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 94.16 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 94.1 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 94.1 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 94.06 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.06 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 94.05 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 93.97 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 93.88 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 93.85 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.83 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 93.6 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 93.53 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 93.45 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 93.37 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 93.32 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 93.23 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 93.22 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.19 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.16 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.13 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 93.09 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 93.06 | |
| PRK05868 | 372 | hypothetical protein; Validated | 92.93 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 92.88 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 92.86 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 92.71 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 92.66 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 92.62 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 92.59 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 92.38 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 92.3 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 92.22 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 92.19 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.1 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 92.06 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 92.02 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 91.96 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 91.93 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 91.92 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 91.82 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 91.78 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 91.78 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 91.68 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 91.64 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 91.59 | |
| PF08484 | 160 | Methyltransf_14: C-methyltransferase C-terminal do | 91.57 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 91.42 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 91.41 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 91.39 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 91.37 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.17 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 91.15 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 91.13 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 90.94 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 90.91 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 90.84 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 90.79 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.49 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 90.48 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 90.36 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 90.33 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 90.33 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 90.32 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 90.29 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 90.28 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 90.28 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 90.26 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 90.15 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 90.14 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 90.08 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 89.89 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 89.88 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 89.81 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 89.72 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.68 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 89.66 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 89.64 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 89.62 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 89.62 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 89.6 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 89.56 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 89.51 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 89.51 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 89.43 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 89.36 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 89.31 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 89.18 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 89.17 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 89.12 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 89.05 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 89.03 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 88.77 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 88.66 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 88.59 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 88.56 | |
| PLN02985 | 514 | squalene monooxygenase | 88.54 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 88.39 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 88.38 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 88.2 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 88.14 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 88.06 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 88.01 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 87.99 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 87.98 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 87.95 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 87.84 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 87.78 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 87.76 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 87.59 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 87.54 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 87.53 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 87.51 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 87.49 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 87.41 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 87.31 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 87.3 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 87.3 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 87.25 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 87.18 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 87.13 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 87.07 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 87.03 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 87.03 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 87.01 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 86.96 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 86.93 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 86.91 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 86.91 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 86.91 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 86.83 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 86.76 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 86.73 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 86.47 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 86.41 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 86.31 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 86.26 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 86.25 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 86.25 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 86.16 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 86.04 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 86.02 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 85.8 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 85.78 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 85.78 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 85.77 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 85.76 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 85.72 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 85.71 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 85.63 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 85.63 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 85.59 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 85.49 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 85.38 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 85.32 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 85.18 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 85.02 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 85.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 84.97 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 84.91 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 84.85 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 84.83 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 84.71 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 84.57 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 84.54 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 84.48 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.45 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 84.42 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 84.42 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 84.29 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 84.19 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 84.16 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 84.07 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 83.9 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 83.78 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 83.68 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 83.6 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 83.44 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 83.37 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 83.34 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 83.3 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 83.27 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 83.25 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 83.25 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 83.06 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 83.05 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 83.04 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 82.97 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 82.96 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 82.9 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 82.82 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 82.78 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 82.77 | |
| COG0476 | 254 | ThiF Dinucleotide-utilizing enzymes involved in mo | 82.77 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 82.68 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 82.68 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 82.65 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 82.57 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 82.54 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 82.53 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.52 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 82.5 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 82.49 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 82.49 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 82.48 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 82.48 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 82.47 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 82.47 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 82.46 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 82.37 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 82.36 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 82.31 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 82.19 |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-73 Score=566.39 Aligned_cols=325 Identities=27% Similarity=0.413 Sum_probs=296.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+|||++|..|+++ | |+|++|+|+++.+++|+ ..+ +|++|||++.
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n-g-----~~V~lw~r~~~~~~~i~---------~~~-------~N~~yLp~i~---- 54 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN-G-----HEVRLWGRDEEIVAEIN---------ETR-------ENPKYLPGIL---- 54 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc-C-----CeeEEEecCHHHHHHHH---------hcC-------cCccccCCcc----
Confidence 48999999999999999999999 7 99999999998777633 322 5889998762
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+| .++.+++|+.++++++|+|+++||+++++++++++++++.+ ++++|+++||+++
T Consensus 55 ---lp------------------~~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~---~~~iv~~sKGie~ 110 (329)
T COG0240 55 ---LP------------------PNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLK---DAIIVSATKGLEP 110 (329)
T ss_pred ---CC------------------cccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccC---CCeEEEEeccccC
Confidence 32 26889999999999999999999999999999999988876 7899999999999
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
+ +.+++|+++++.+|. .+++++||||||.|++++.|+.++++ .+.+.+++++++|++.+|++|+++|++|+|
T Consensus 111 ~-----t~~l~seii~e~l~~--~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~Gve 183 (329)
T COG0240 111 E-----TGRLLSEIIEEELPD--NPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVIGVE 183 (329)
T ss_pred C-----CcchHHHHHHHHcCC--CeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchhhhH
Confidence 7 689999999999984 35899999999999999999988765 567888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHHHh
Q 012349 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELA 358 (465)
Q Consensus 282 ~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~ 358 (465)
++||+|||+|||+||++|+++| +|++|+++++|++||.+|+.++|++|+||+|+ |+|||++||+ +||||+||..|+
T Consensus 184 igGAlKNViAIA~Gi~dGlg~G-~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsGlGDLilTCts~~SRN~r~G~~lg 262 (329)
T COG0240 184 IGGALKNVIAIAAGIADGLGLG-DNAKAALITRGLAEMTRLGVALGAKPETFMGLSGLGDLILTCTSPLSRNRRFGLLLG 262 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-hhHHHHHHHhHHHHHHHHHHHhCCCcchhcccccccceeEecCCCccccHHHHHHHh
Confidence 9999999999999999999998 79999999999999999999999999999998 9999999997 699999999999
Q ss_pred cCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhcc
Q 012349 359 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDE 438 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~~~ 438 (465)
+|.++++++..+ ++++||+.|+++++++++++|+ + |||+++||+||+++.+|.+++..||.++
T Consensus 263 ~g~~~~e~l~~~--g~vvEGv~t~k~v~~la~~~~i--------------~-mPI~~~Vy~vl~~~~~~~~~~~~L~~r~ 325 (329)
T COG0240 263 QGLSLDEALEEI--GQVVEGVRTAKAVYELAKKLGI--------------E-MPITEAVYRVLYEGLDPKEAIEELMGRD 325 (329)
T ss_pred CCCCHHHHHHhc--CCeeecHHHHHHHHHHHHHcCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhccc
Confidence 999887666443 5789999999999999999994 7 8999999999999999999999999999
Q ss_pred cCCC
Q 012349 439 TMND 442 (465)
Q Consensus 439 ~~~~ 442 (465)
.|.|
T Consensus 326 ~k~E 329 (329)
T COG0240 326 LKPE 329 (329)
T ss_pred cCCC
Confidence 8876
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-69 Score=550.84 Aligned_cols=349 Identities=26% Similarity=0.375 Sum_probs=302.4
Q ss_pred hhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCC--CCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhc
Q 012349 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRR 110 (465)
Q Consensus 33 ~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~--~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n 110 (465)
|.||++.+.+.|||+|||+|+||+|+|..|+++ |.-. -+|+|.+|.|+++. +.+++.+.|++++ +|
T Consensus 1 ~~~~~~~~~~~~ki~ViGaG~wGtAlA~~l~~n-~~~~~~~~~~V~lw~~~~~~----~~~~~~~~in~~~-------~N 68 (365)
T PTZ00345 1 RSLFQKLRCGPLKVSVIGSGNWGSAISKVVGEN-TQRNYIFHNEVRMWVLEEIV----EGEKLSDIINTKH-------EN 68 (365)
T ss_pred CcchhhcccCCCeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEecccc----cchHHHHHHHhcC-------CC
Confidence 567888899999999999999999999999998 5100 01699999999852 1223445566655 58
Q ss_pred ccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHH--hhhccC
Q 012349 111 CAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR--YWKERI 188 (465)
Q Consensus 111 ~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~--~l~~~~ 188 (465)
++|+|+++ || .++.+++|++++++++|+||++||++.++++++++++ ++++
T Consensus 69 ~~ylp~~~-------Lp------------------~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~-- 121 (365)
T PTZ00345 69 VKYLPGIK-------LP------------------DNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKK-- 121 (365)
T ss_pred cccCCCCc-------CC------------------CceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCC--
Confidence 89998762 32 2688999999999999999999999999999999998 7765
Q ss_pred CCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCC
Q 012349 189 TVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRP 267 (465)
Q Consensus 189 ~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~ 267 (465)
++++||++||++.++. +..++|+++++.++. ++++++|||||.|++++.|+.++++ .+.+.++.++++|+++
T Consensus 122 -~~~iIS~aKGIe~~t~---~~~~~sevi~e~l~~---~~~~LsGPs~A~Eva~~~pt~~vias~~~~~a~~~~~lf~~~ 194 (365)
T PTZ00345 122 -HARAISLTKGIIVENG---KPVLCSDVIEEELGI---PCCALSGANVANDVAREEFSEATIGCEDKDDALIWQRLFDRP 194 (365)
T ss_pred -CCEEEEEeCCcccCCC---CcccHHHHHHHHhCC---CeEEEECCCHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 5689999999998731 237899999999963 5789999999999999999988764 5778889999999999
Q ss_pred CCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCC--CcchhccC-chhhhhhc
Q 012349 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAE--EPEKLAGP-LLADTYVT 344 (465)
Q Consensus 268 g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~--~~~t~~g~-glgDl~~T 344 (465)
+|++|.++|++|+|+||++||||||++||++|+++| +|++|++|++|++||.+|++++|+ +++||+|+ |+|||++|
T Consensus 195 ~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G-~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~GDLi~T 273 (365)
T PTZ00345 195 YFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLG-TNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLADLITT 273 (365)
T ss_pred cEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHhHhhhc
Confidence 999999999999999999999999999999999997 799999999999999999999975 89999996 99999999
Q ss_pred ccCchhHHHHHHHhcC---CChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHH
Q 012349 345 LLKGRNAWYGQELAKG---RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 421 (465)
Q Consensus 345 ~~~sRN~~~G~~l~~g---~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il 421 (465)
|+.||||+||++|++| ++++++++++.+++++||+.|++++++++++++++ .+ +||+++||+||
T Consensus 274 c~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~------------~~-~Pi~~~vy~il 340 (365)
T PTZ00345 274 CLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLK------------KE-FPLFTVTYKIA 340 (365)
T ss_pred ccCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCC------------CC-CCHHHHHHHHH
Confidence 9999999999999986 47777776654467999999999999999999952 25 89999999999
Q ss_pred hcCCCHHHHHHHHHhcccCC
Q 012349 422 IMRESPIQAILEALRDETMN 441 (465)
Q Consensus 422 ~~~~~~~~~~~~ll~~~~~~ 441 (465)
|++.+|.+++..||.++.+.
T Consensus 341 ~~~~~~~~~~~~l~~r~~~~ 360 (365)
T PTZ00345 341 FEGADPSSLIDVLSTNELRP 360 (365)
T ss_pred hCCCCHHHHHHHHHcCCCcc
Confidence 99999999999999877664
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=521.01 Aligned_cols=329 Identities=25% Similarity=0.347 Sum_probs=285.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCC---CeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRD---KVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~---~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
||+|||+|+||+++|..|+++ |...+ .|+|++|.|+++. ..+.+.+.+++.+ +|++|+|++
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~~~~~----~~~~~~~~in~~~-------~n~~ylpgi---- 64 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVFEEEI----EGRNLTEIINTTH-------ENVKYLPGI---- 64 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEecccc----CCHHHHHHHHhcC-------CCccccCCC----
Confidence 699999999999999999988 52111 1799999995421 1123445566654 588888875
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
++| .++++++|+++++++||+||++||+++++++++++++++++ ++++||++||++
T Consensus 65 ---~Lp------------------~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~---~~~iVs~tKGie 120 (342)
T TIGR03376 65 ---KLP------------------ANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKP---NARAISCIKGLE 120 (342)
T ss_pred ---cCC------------------CCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCC---CCEEEEEeCCcc
Confidence 222 26889999999999999999999999999999999999876 678999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CC----hhHHHHHHHHHcCCCCeEEecCC
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GA----EKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~----~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
.+. ++.+++|+++++.++ .++++++|||||.|++++.|+.++++ .+ .+.++.++++|++++|++|.++|
T Consensus 121 ~~~---~~~~~~se~i~e~l~---~~~~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~D 194 (342)
T TIGR03376 121 VSK---DGVKLLSDIIEEELG---IPCGVLSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDD 194 (342)
T ss_pred cCC---CcCccHHHHHHHHhC---CCeEEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCC
Confidence 762 257899999999885 35789999999999999999988764 45 67899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcc--hhccC-chhhhhhcccCchhHHH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPE--KLAGP-LLADTYVTLLKGRNAWY 353 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~--t~~g~-glgDl~~T~~~sRN~~~ 353 (465)
++|+|+||++||||||++||++|+++| +|++|++|+++++||.++++++|++++ ||+|+ |+|||++||+.||||+|
T Consensus 195 v~GvEl~galKNv~AIa~Gi~~Gl~~g-~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~GDL~~Tc~ssRN~~~ 273 (342)
T TIGR03376 195 VAGVEIAGALKNVVAIAAGFVDGLGWG-DNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGVADLITTCLGGRNFKV 273 (342)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhhhhheeecCccHHH
Confidence 999999999999999999999999997 789999999999999999999999887 99996 99999999988999999
Q ss_pred HHHHhc-CCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHH
Q 012349 354 GQELAK-GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAIL 432 (465)
Q Consensus 354 G~~l~~-g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~ 432 (465)
|++|++ |++++++.+++..++++||+.|++++++++++++++ .+ +||++++|+||+++.+|.+++.
T Consensus 274 G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~------------~~-~Pi~~~vy~il~~~~~~~~~~~ 340 (342)
T TIGR03376 274 GRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKD------------DE-FPLFEAVYQILYEGLPPKKLPE 340 (342)
T ss_pred HHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCC------------cC-CCHHHHHHHHHhCCCCHHHHHh
Confidence 999999 999988877644567999999999999999999973 23 7999999999999999999875
Q ss_pred H
Q 012349 433 E 433 (465)
Q Consensus 433 ~ 433 (465)
.
T Consensus 341 ~ 341 (342)
T TIGR03376 341 C 341 (342)
T ss_pred h
Confidence 4
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-64 Score=494.56 Aligned_cols=363 Identities=34% Similarity=0.448 Sum_probs=317.5
Q ss_pred hHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCC-CCeeEEEEecCchhhhhhhhhhhHHHHhchhhh
Q 012349 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLR-DKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~-~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~ 103 (465)
.++++++.++.+++.+..+.||+|||+|+||+++|+.++++++.+. -..+|.+|.+.++.-.+ .++|.++||++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~--~~~L~eiIN~~h-- 78 (372)
T KOG2711|consen 3 DEIKLDESIRNLGKAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGE--AEKLTEIINSRH-- 78 (372)
T ss_pred cccccchhhhccCchhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCCh--hHHHHHHhcccc--
Confidence 4678899999999998889999999999999999999998753221 11479999998864432 479999999998
Q ss_pred HHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh
Q 012349 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (465)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~ 183 (465)
+|++|+|++ ++| .++.+++|+.+++++||++|+++|+|++.++|++|+.+
T Consensus 79 -----eN~KYlpg~-------~lP------------------~NvvAv~dl~ea~~dADilvf~vPhQf~~~ic~~l~g~ 128 (372)
T KOG2711|consen 79 -----ENVKYLPGI-------KLP------------------ENVVAVPDLVEAAKDADILVFVVPHQFIPRICEQLKGY 128 (372)
T ss_pred -----ccccccCCc-------cCC------------------CCeEecchHHHHhccCCEEEEeCChhhHHHHHHHHhcc
Confidence 599999986 233 26889999999999999999999999999999999999
Q ss_pred hhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHH--HHHH
Q 012349 184 WKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWR--KPLA 261 (465)
Q Consensus 184 l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~--~~l~ 261 (465)
+++ +...||++||++...+ .++..++|++|.+.+|.+ +.+++|||+|.|+++++++..+++..+++. ..++
T Consensus 129 vk~---~~~aISL~KG~e~~~~-g~~i~liS~iI~~~lgI~---~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~ 201 (372)
T KOG2711|consen 129 VKP---GATAISLIKGVEVGEE-GPGIRLISQIIHRALGIP---CSVLMGANIASEVANEKFCETTIGYKDKKEAGILLK 201 (372)
T ss_pred cCC---CCeEEEeecceeccCC-CCceeehHHHHHHHhCCC---ceeecCCchHHHHHhccccceeEeccchhhcchHHH
Confidence 998 7889999999987532 225789999999999965 469999999999999999999987754433 3499
Q ss_pred HHHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHh-CC-Ccchhcc-Cch
Q 012349 262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLL-AE-EPEKLAG-PLL 338 (465)
Q Consensus 262 ~ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~-G~-~~~t~~g-~gl 338 (465)
++|++++|+++..+|+.++|+||+||||+|+|+||++||++| +|+++++++.++.||..|++.+ .. .++|+.+ +|+
T Consensus 202 ~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g-~NTkaAi~r~Gl~Em~~F~~~f~p~~~~~t~~escGv 280 (372)
T KOG2711|consen 202 KLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLG-NNTKAAIIRLGLLEMIKFATHFYPGSKPTTFFESCGV 280 (372)
T ss_pred HHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCC-cchHHHHHHhhHHHHHHHHHHhCCCCCcceeeccccH
Confidence 999999999999999999999999999999999999999998 6888999999999999998764 55 6778888 499
Q ss_pred hhhhhcccCchhHHHHHHHhcC-CChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHH
Q 012349 339 ADTYVTLLKGRNAWYGQELAKG-RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKML 417 (465)
Q Consensus 339 gDl~~T~~~sRN~~~G~~l~~g-~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~v 417 (465)
|||++||+.+|||+++++++++ ++.++.++++-++|.+||+.|+++||+++++.++ ++++|++++|
T Consensus 281 aDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq~~QG~~Ta~~Vy~~L~~~~l-------------~~kfPlftaV 347 (372)
T KOG2711|consen 281 ADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKLQGPATAKEVYELLQKKGL-------------VEKFPLFTAV 347 (372)
T ss_pred HHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCCcccCcHHHHHHHHHHHHcCh-------------hhhCcHHHHH
Confidence 9999999999999999999987 7777788888778899999999999999999997 5669999999
Q ss_pred HHHHhcCCCHHHHHHHHHhcccCCCc
Q 012349 418 YKILIMRESPIQAILEALRDETMNDP 443 (465)
Q Consensus 418 y~il~~~~~~~~~~~~ll~~~~~~~~ 443 (465)
|+|+|++. |.+++.++|++++..+|
T Consensus 348 ykI~~~~~-~~~~lle~l~~~~~~~~ 372 (372)
T KOG2711|consen 348 YKICYERL-PPQALLECLRNHPEDDP 372 (372)
T ss_pred HHHHhcCC-CHHHHHHHHhcccccCC
Confidence 99999987 89999999998887654
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=486.46 Aligned_cols=326 Identities=25% Similarity=0.384 Sum_probs=287.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccc-hhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK-YVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~-~~~~~ 120 (465)
.+|||+|||+|+||+++|..|+++ | +|++|.|++++++.++. .+ .|..|++ +.
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~-g------~v~l~~~~~~~~~~i~~---------~~-------~~~~~l~~~~--- 59 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARR-G------PTLQWVRSAETADDIND---------NH-------RNSRYLGNDV--- 59 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C------CEEEEeCCHHHHHHHHh---------cC-------CCcccCCCCc---
Confidence 458999999999999999999988 5 58899999887766433 22 2444554 21
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+| .++.+++|++++++++|+||++||+++++++++++++++++ ++++|+++||+
T Consensus 60 ----~l~------------------~~i~~t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~---~~~vIsl~kGi 114 (341)
T PRK12439 60 ----VLS------------------DTLRATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRP---WVPVVSLVKGL 114 (341)
T ss_pred ----ccC------------------CCeEEECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEEEeCC
Confidence 111 15778899988899999999999999999999999999876 67899999999
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
+.+ +.+++++++++.++. .++++++|||++.|++.|.++.++++ .+++.++.++++|++++|+++.++|++|
T Consensus 115 ~~~-----t~~~~se~i~~~l~~--~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf~~~~~~v~~s~Di~g 187 (341)
T PRK12439 115 EQG-----TNMRMSQIIEEVLPG--HPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLFRTRRFRVYTTDDVVG 187 (341)
T ss_pred cCC-----CCCcHHHHHHHHcCC--CCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCCEEEEEcCchHH
Confidence 987 578999999998863 35788999999999999998877654 4667789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHH
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQE 356 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~ 356 (465)
+||+|++||++|+++|+++|+++| +|++|++++++++||.++++++|++++||+|+ |+|||++||+ .||||+||++
T Consensus 188 ve~~~alkNv~aia~G~~~g~~~g-~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~GDl~~Tc~s~~sRN~~~G~~ 266 (341)
T PRK12439 188 VEMAGALKNVFAIAVGMGYSLGIG-ENTRAMVIARALREMTKLGVAMGGNPETFAGLAGMGDLIVTCTSQRSRNRHVGEQ 266 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHhCCCcccccccchhhhhhhhccCCCCccHHHHHH
Confidence 999999999999999999999997 68899999999999999999999999999996 9999999996 5999999999
Q ss_pred HhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHh
Q 012349 357 LAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALR 436 (465)
Q Consensus 357 l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~ 436 (465)
|++|++++++.+++ ++++||+.|++.++++++++++ + +||++++|+|||++.+|.+++..||.
T Consensus 267 l~~g~~~~~~~~~~--~~~~EG~~~~~~~~~~~~~~~~--------------~-~Pi~~~~~~il~~~~~~~~~~~~l~~ 329 (341)
T PRK12439 267 LGAGKPIDEIIASM--NQVAEGVKAASVVMEFADEYGL--------------N-MPIAREVDAVINHGSTVEQAYRGLIA 329 (341)
T ss_pred HHCCCCHHHHHHhc--CCEEehHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhc
Confidence 99999988877544 4689999999999999999995 6 89999999999999999999999999
Q ss_pred cccCCCc
Q 012349 437 DETMNDP 443 (465)
Q Consensus 437 ~~~~~~~ 443 (465)
++.+.|.
T Consensus 330 ~~~~~e~ 336 (341)
T PRK12439 330 EVPGHEV 336 (341)
T ss_pred CCCCccc
Confidence 9999873
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-51 Score=413.41 Aligned_cols=318 Identities=22% Similarity=0.356 Sum_probs=272.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++ +.+ +|..|+++.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~-g-----~~V~l~~r~~~~~~~i~---------~~~-------~~~~~~~~~------ 52 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK-K-----ISVNLWGRNHTTFESIN---------TKR-------KNLKYLPTC------ 52 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecCHHHHHHHH---------HcC-------CCcccCCCC------
Confidence 6899999999999999999999 7 99999999987766533 221 234455432
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCcchHHHHHHHHHH-hhhccCCCCEEEEeecccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGVE 201 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIlaVps~~l~~vl~~l~~-~l~~~~~~~ivIs~~kGi~ 201 (465)
.+| .++.+++|+.+++ .++|+||++||+++++++++++++ ++.+ ++.+++++||++
T Consensus 53 -~~~------------------~~i~~~~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~---~~~vv~~~nGi~ 110 (326)
T PRK14620 53 -HLP------------------DNISVKSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKK---NTPILICSKGIE 110 (326)
T ss_pred -cCC------------------CCeEEeCCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCC---CCEEEEEEcCee
Confidence 111 1577888888876 589999999999999999999998 8776 678999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCCCCeEEecCChHHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (465)
.. +..++++.+.+.++. .++.+++||+++.+++.+.++.+.++ .+.+..+.++++|++.+|+++.++|++|+
T Consensus 111 ~~-----~~~~~~~~l~~~~~~--~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~Di~g~ 183 (326)
T PRK14620 111 KS-----SLKFPSEIVNEILPN--NPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISKLSNENLKIIYSQDIIGV 183 (326)
T ss_pred CC-----CCccHHHHHHHHcCC--CceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHHHCCCCeEEEecCcchhh
Confidence 76 467788999988863 46778999999999998777655554 45567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCC--CcchhccC-chhhhhhccc--CchhHHHHH
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAE--EPEKLAGP-LLADTYVTLL--KGRNAWYGQ 355 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~--~~~t~~g~-glgDl~~T~~--~sRN~~~G~ 355 (465)
+|+|++||++++++|+++|+.+++ |.++++++++++||..+++++|+ +++|+.|+ |+||+++||+ .||||+||+
T Consensus 184 ~~~k~~~N~ia~~~g~~~g~~~~~-n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl~g~gdl~~t~~~~~~rN~~~G~ 262 (326)
T PRK14620 184 QIGAALKNIIAIACGIVLGKNLGN-NAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGPSCLGDLILTCTTLHSRNMSFGF 262 (326)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhccchhhhhhheecCCCCCcHHHHH
Confidence 999999999999999999999874 56789999999999999999998 78999997 8999999996 899999999
Q ss_pred HHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 012349 356 ELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEAL 435 (465)
Q Consensus 356 ~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll 435 (465)
+|++|...+|+.+. .+.++||+.+++.++++++++|+ + +|++++||++++++.+|.+++..+|
T Consensus 263 ~l~~g~~~~d~~~~--~~~~vegi~~~~~v~~~a~~~~i--------------~-~P~~~~l~~~~~~~~~~~~~~~~~~ 325 (326)
T PRK14620 263 KIGNGFNINQILSE--GKSVIEGFSTVKPLISLAKKLNI--------------E-LPICESIYNLLYENISLEKTISVIL 325 (326)
T ss_pred HHHCCCCHHHHHHh--CCCEeecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHh
Confidence 99999888776532 23469999999999999999994 6 8999999999999999999999887
Q ss_pred h
Q 012349 436 R 436 (465)
Q Consensus 436 ~ 436 (465)
+
T Consensus 326 ~ 326 (326)
T PRK14620 326 S 326 (326)
T ss_pred C
Confidence 4
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=364.54 Aligned_cols=299 Identities=25% Similarity=0.409 Sum_probs=264.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.|||+|||+|+||+++|..|+++ | |+|++|+|++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-G-----~~V~~~~r~~~--------------------------------------- 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-G-----HRVRVWSRRSG--------------------------------------- 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-C-----CEEEEEeCCCC---------------------------------------
Confidence 47999999999999999999999 7 99999998742
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh-hhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~-l~~~~~~~ivIs~~kGi~ 201 (465)
.+++++++++|+||+++|+++++++++++.++ +++ ++++|+++||++
T Consensus 39 -----------------------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~---~~ivi~~s~gi~ 86 (308)
T PRK14619 39 -----------------------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPP---ETIIVTATKGLD 86 (308)
T ss_pred -----------------------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCC---CcEEEEeCCccc
Confidence 12335567899999999999999999999875 554 678999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE-eCChhHHHHHHHHHcCCCCeEEecCChHHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (465)
+. +...+++.+.+.++. .++.+++||+++.++..+.++..++ +.+.+..+.++++|++.++++++++|++|+
T Consensus 87 ~~-----~~~~~s~~~~~~~~~--~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G~ 159 (308)
T PRK14619 87 PE-----TTRTPSQIWQAAFPN--HPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNSDPLGT 159 (308)
T ss_pred CC-----CCcCHHHHHHHHcCC--CceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCchhh
Confidence 86 467888888877653 4677889999999999887765554 557788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHHH
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQEL 357 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l 357 (465)
+|++++||++||++|+.++++++ +|.+++++.+++.|+..+++++|.+++++.++ |+||+++||+ .|||+++|..+
T Consensus 160 ~~~~alkNv~ai~~G~~~~~~l~-~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~~~g~~l 238 (308)
T PRK14619 160 ELGGTLKNVIAIAAGVCDGLQLG-TNAKAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNYQVGYGL 238 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccHHHHHHH
Confidence 99999999999999999999886 68888999999999999999999999999886 9999999996 69999999999
Q ss_pred hcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhc
Q 012349 358 AKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 437 (465)
Q Consensus 358 ~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~~ 437 (465)
++|++.+++.+++ .+++||+.+++.++++++++|+ + +|+++++|++++++.+|.+.+..+|.+
T Consensus 239 ~~g~~~~~~~~~~--~~~~eG~~~~~~~~~~~~~~~~--------------~-~Pl~~~v~~i~~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 239 AQGKSLEQILAEL--EGTAEGVNTANVLVQLAQQQNI--------------A-VPITEQVYRLLQGEITPQQALEELMER 301 (308)
T ss_pred HCCCCHHHHHHhc--CCEeecHHHHHHHHHHHHHcCC--------------C-CCHHHHHHHHHcCCCCHHHHHHHHHcC
Confidence 9999988877654 3589999999999999999994 6 899999999999999999999999999
Q ss_pred ccCCCc
Q 012349 438 ETMNDP 443 (465)
Q Consensus 438 ~~~~~~ 443 (465)
..+.||
T Consensus 302 ~~~~~~ 307 (308)
T PRK14619 302 DLKPEF 307 (308)
T ss_pred CCcccc
Confidence 888775
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=365.67 Aligned_cols=321 Identities=25% Similarity=0.351 Sum_probs=265.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++. .+ .|..++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~-G-----~~V~~~~r~~~~~~~i~~---------~~-------~~~~~~~g~----- 56 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK-G-----VPVRLWARRPEFAAALAA---------ER-------ENREYLPGV----- 56 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH---------hC-------cccccCCCC-----
Confidence 58999999999999999999998 7 999999999876655322 11 233344331
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++ .++..+++++++++++|+||++||+++++++++.++ + +.++|+++||+.+
T Consensus 57 --~~~------------------~~~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l~----~---~~~vi~~~~Gi~~ 109 (328)
T PRK14618 57 --ALP------------------AELYPTADPEEALAGADFAVVAVPSKALRETLAGLP----R---ALGYVSCAKGLAP 109 (328)
T ss_pred --cCC------------------CCeEEeCCHHHHHcCCCEEEEECchHHHHHHHHhcC----c---CCEEEEEeecccc
Confidence 111 135677888888899999999999999888886553 3 5689999999986
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE-eCChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
.+. ....+++.+.+... ..+.++.||+++.+++.+.++..+. +.+++..+.++++|++.+++++.++|++|++
T Consensus 110 ~~~---~~~~l~~~l~~~~~---~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~~~~~v~~~~di~g~~ 183 (328)
T PRK14618 110 DGG---RLSELARVLEFLTQ---ARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAFSGPSFRVYTSRDRVGVE 183 (328)
T ss_pred CCC---ccchHHHHHHHhcC---CCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecCCccchh
Confidence 521 23456666654221 2357899999999999988765544 5677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHHHh
Q 012349 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELA 358 (465)
Q Consensus 282 ~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~ 358 (465)
|++++||++|+++|+..+++++ +|..++++.++++|+..+++++|.++++++++ |+|||++||. .+||+++|+.++
T Consensus 184 ~~~~lkN~~ai~~G~~~~~k~~-~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~ 262 (328)
T PRK14618 184 LGGALKNVIALAAGMVDGLKLG-DNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIV 262 (328)
T ss_pred hhHHHHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHh
Confidence 9999999999999999999997 67888999999999999999999999999985 9999999984 899999999999
Q ss_pred cCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhcc
Q 012349 359 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDE 438 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~~~ 438 (465)
+|++.++.. .+..+.||+.+++.++++++++++ + +|+++++|++|+++.+|.+++..+|.++
T Consensus 263 ~g~~~~~~~---~~~~~~~g~kd~~~~~~la~~~~~--------------~-~Pl~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (328)
T PRK14618 263 RGVDREHLE---AGGKVVEGLYTVKALDAWAKAHGH--------------D-LPIVEAVARVARGGWDPLAGLRSLMGRE 324 (328)
T ss_pred CCCCHHHHH---HcCCEEecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHhCCCCHHHHHHHHhcCC
Confidence 997765443 234578999999999999999994 6 8999999999999999999999999888
Q ss_pred cCCC
Q 012349 439 TMND 442 (465)
Q Consensus 439 ~~~~ 442 (465)
.+.|
T Consensus 325 ~~~~ 328 (328)
T PRK14618 325 AKEE 328 (328)
T ss_pred CCCC
Confidence 7754
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=330.28 Aligned_cols=321 Identities=25% Similarity=0.402 Sum_probs=269.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.++ .+..++++.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~----- 53 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN-G-----HDVTLWARDPEQAAEINADR----------------ENPRYLPGI----- 53 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHcC----------------cccccCCCC-----
Confidence 47999999999999999999998 7 89999999987666532211 011222211
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++ .++.++++++++++++|+||+|||+++++++++++.+++.+ ++++|+++||+.+
T Consensus 54 --~~~------------------~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~~~~---~~~vi~~~ngv~~ 110 (325)
T PRK00094 54 --KLP------------------DNLRATTDLAEALADADLILVAVPSQALREVLKQLKPLLPP---DAPIVWATKGIEP 110 (325)
T ss_pred --cCC------------------CCeEEeCCHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhcCC---CCEEEEEeecccC
Confidence 110 13566788888889999999999999999999999998876 6899999999988
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE-eCChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
+ +...+++.+++.++.. ...+++.||+++.+...+.++.+.. +.+++..+.++++|+..+++++.++|+.|.+
T Consensus 111 ~-----~~~~~~~~l~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~ 184 (325)
T PRK00094 111 G-----TGKLLSEVLEEELPDL-APIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELFHSPYFRVYTNTDVIGVE 184 (325)
T ss_pred C-----CCCcHHHHHHHHcCCC-CceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCEEEEecCCcchhh
Confidence 6 4567888888877631 2467899999999988887665554 4567788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHHHh
Q 012349 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELA 358 (465)
Q Consensus 282 ~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~ 358 (465)
|++++||++++++|+..+++++ +|...+++..+++|+..+++++|.+++++.+. +.||+++||. .+||+.+|..++
T Consensus 185 ~~k~~~N~~~~~~g~~~~~k~~-~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~ 263 (325)
T PRK00094 185 LGGALKNVIAIAAGIADGLGLG-DNARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALG 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHH
Confidence 9999999999999999999986 57777999999999999999999999999884 8999999995 599999999999
Q ss_pred cCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhc
Q 012349 359 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 437 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~~ 437 (465)
+|.+..++.+.+ +.+.||...++.++++++++|+ + +|+++++|++++++++|.+.+..|+.+
T Consensus 264 ~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~~~--------------~-~P~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (325)
T PRK00094 264 QGKSLEEALAEI--GMVAEGVRTAKAVYELAKKLGV--------------E-MPITEAVYAVLYEGKDPREAVEDLMGR 325 (325)
T ss_pred CCCCHHHHHHHc--CCEeecHHHHHHHHHHHHHhCC--------------C-CCHHHHHHHHHcCCCCHHHHHHHHhcC
Confidence 998765554333 2689999999999999999994 6 899999999999999999999998863
|
|
| >PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=261.83 Aligned_cols=144 Identities=33% Similarity=0.519 Sum_probs=128.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcc-hhccC-chhhhhhccc--Cchh
Q 012349 275 GDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPE-KLAGP-LLADTYVTLL--KGRN 350 (465)
Q Consensus 275 ~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~-t~~g~-glgDl~~T~~--~sRN 350 (465)
+|++|+|||+++||+|||++||++|+++| +|++|++|+++++||.++++++|++++ |++++ |+|||++||+ .|||
T Consensus 1 ~Dv~GvEl~galKNi~Aia~Gi~~g~~~g-~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN 79 (149)
T PF07479_consen 1 SDVVGVELCGALKNIYAIAAGIADGLGLG-DNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRN 79 (149)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHcCCCC-CChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCc
Confidence 69999999999999999999999999997 899999999999999999999999999 99996 9999999997 5999
Q ss_pred HHHHHHHhcC-CChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHH
Q 012349 351 AWYGQELAKG-RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQ 429 (465)
Q Consensus 351 ~~~G~~l~~g-~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~ 429 (465)
|+||+++++| .+.+++.+++.+++++||+.|++.++++++++++ + +|+++++|+||+++.+|.+
T Consensus 80 ~~~G~~l~~g~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i--------------~-~Pl~~~vy~Il~~~~~~~~ 144 (149)
T PF07479_consen 80 RRFGKALGKGGKSIEEAEKEMLGGQTVEGVRTAKIVYELAEKYNI--------------E-FPLFTAVYKILYENESPEE 144 (149)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHTTTS--HHHHHHHHHHHHHHHCT---------------G-SHHHHHHHHHHHS---HHH
T ss_pred HHHHHHHHccCCCHHHHHHhhhhcchHHHHHHHHHHHHHHHHhCC--------------C-ChHHHHHHHHHcCcCCHHH
Confidence 9999999999 8888888777667899999999999999999994 6 8999999999999999999
Q ss_pred HHHHH
Q 012349 430 AILEA 434 (465)
Q Consensus 430 ~~~~l 434 (465)
++.+|
T Consensus 145 ~i~~l 149 (149)
T PF07479_consen 145 AIEEL 149 (149)
T ss_dssp HHHHH
T ss_pred HHHcC
Confidence 98765
|
1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B .... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-27 Score=213.27 Aligned_cols=152 Identities=32% Similarity=0.562 Sum_probs=122.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++ +++ .|+.|+++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g-----~~V~l~~~~~~~~~~i~---------~~~-------~n~~~~~~~------- 51 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-G-----HEVTLWGRDEEQIEEIN---------ETR-------QNPKYLPGI------- 51 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-T-----EEEEEETSCHHHHHHHH---------HHT-------SETTTSTTS-------
T ss_pred CEEEECcCHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHHHH---------HhC-------CCCCCCCCc-------
Confidence 799999999999999999999 7 99999999987776533 322 477787764
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccc
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAEL 204 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~ 204 (465)
.+| .++.+++|++++++++|+||++||+++++++++++++++++ ++++|+++||++..
T Consensus 52 ~l~------------------~~i~~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~---~~~ii~~~KG~~~~- 109 (157)
T PF01210_consen 52 KLP------------------ENIKATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKK---GQIIISATKGFEPG- 109 (157)
T ss_dssp BEE------------------TTEEEESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHT---T-EEEETS-SEETT-
T ss_pred ccC------------------cccccccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCC---CCEEEEecCCcccC-
Confidence 222 26889999999999999999999999999999999999987 78999999999765
Q ss_pred cccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCC
Q 012349 205 EAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGA 253 (465)
Q Consensus 205 ~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~ 253 (465)
+..++++++++.++.+ ++++++||+||.|++.++++.+++++.
T Consensus 110 ----~~~~~~~~i~~~~~~~--~~~~lsGP~~A~Ei~~~~pt~~~~as~ 152 (157)
T PF01210_consen 110 ----TLLLLSEVIEEILPIP--RIAVLSGPSFAEEIAEGKPTAVVIASK 152 (157)
T ss_dssp ----EEEEHHHHHHHHHSSC--GEEEEESS--HHHHHTT--EEEEEEES
T ss_pred ----CCccHHHHHHHHhhhc--ceEEeeCccHHHHHHcCCCeEEEEEec
Confidence 5789999999999853 489999999999999999998877543
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=214.20 Aligned_cols=284 Identities=18% Similarity=0.175 Sum_probs=194.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++.+++ .+.. +.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~~g~-------------------~~~~-----~~ 50 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-G-----HDVTLVARRGAHLDALNENGL-------------------RLED-----GE 50 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECChHHHHHHHHcCC-------------------cccC-----Cc
Confidence 6899999999999999999998 7 899999998766554322111 0100 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
.. .++..+++.+++ .++|+||+|||+++++++++++.+++.+ ++.||+++||+...
T Consensus 51 ~~--------------------~~~~~~~~~~~~-~~~d~vila~k~~~~~~~~~~l~~~l~~---~~~iv~~~nG~~~~ 106 (304)
T PRK06522 51 IT--------------------VPVLAADDPAEL-GPQDLVILAVKAYQLPAALPSLAPLLGP---DTPVLFLQNGVGHL 106 (304)
T ss_pred ee--------------------ecccCCCChhHc-CCCCEEEEecccccHHHHHHHHhhhcCC---CCEEEEecCCCCcH
Confidence 00 012334566554 8999999999999999999999998876 67899999999765
Q ss_pred ccccccCCCHHHHHHhHhCCCC------ccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 204 LEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~------~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
+.+.+.++... ...+.+.+|+++.+.+.+...........+..+.++++|+..++.++.++|+
T Consensus 107 -----------~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~~di 175 (304)
T PRK06522 107 -----------EELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAAAEALADLLNAAGLDVEWSPDI 175 (304)
T ss_pred -----------HHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHHHHHHHHHHHhcCCCCCCChHH
Confidence 45666554211 1123577899888777654332222222245788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCC---cchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhccc--CchhH-
Q 012349 278 VTHEVMGGLKNVYAIGAGMVAALTNES---ATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL--KGRNA- 351 (465)
Q Consensus 278 ~gve~~galKNviAia~Gi~~gl~~g~---~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~--~sRN~- 351 (465)
.+.+|.|.++|+...+.+++.+..+|. +.....++...+.|+..+++++|.+.... .+.+.+.... ...|+
T Consensus 176 ~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~---~~~~~~~~~~~~~~~~~s 252 (304)
T PRK06522 176 RTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVE---EVREYVRQVIQKTAANTS 252 (304)
T ss_pred HHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChH---HHHHHHHHHhhccCCCCc
Confidence 999999999998877777776665431 22234799999999999999999865321 0111111110 01111
Q ss_pred HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 352 WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 352 ~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
++-+++.+|+.+ .+|-+.. .++++++++|+ + +|.++++|+++..
T Consensus 253 Sm~~D~~~gr~t-----------Eid~i~G--~~v~~a~~~gv--------------~-~P~~~~l~~~~~~ 296 (304)
T PRK06522 253 SMLQDLEAGRPT-----------EIDAIVG--YVLRRGRKHGI--------------P-TPLNDALYGLLKA 296 (304)
T ss_pred hHHHHHHcCCCc-----------ccchhcc--HHHHHHHHcCC--------------C-CcHHHHHHHHHHH
Confidence 233333333322 2333333 69999999995 7 8999999999964
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=203.26 Aligned_cols=286 Identities=17% Similarity=0.177 Sum_probs=186.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|+| +++++.++.++ ..+.... ++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g-----~~V~~~~r-~~~~~~~~~~g-------------------~~~~~~~---~~ 51 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-G-----RDVTFLVR-PKRAKALRERG-------------------LVIRSDH---GD 51 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C-----CceEEEec-HHHHHHHHhCC-------------------eEEEeCC---Ce
Confidence 7999999999999999999998 7 99999999 65555432211 0111100 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
..+ +...+++.+++..++|+||+|||+++++++++++.+++.+ +++|++++||+...
T Consensus 52 ~~~--------------------~~~~~~~~~~~~~~~d~vilavk~~~~~~~~~~l~~~~~~---~~~ii~~~nG~~~~ 108 (305)
T PRK12921 52 AVV--------------------PGPVITDPEELTGPFDLVILAVKAYQLDAAIPDLKPLVGE---DTVIIPLQNGIGQL 108 (305)
T ss_pred EEe--------------------cceeecCHHHccCCCCEEEEEecccCHHHHHHHHHhhcCC---CCEEEEeeCCCChH
Confidence 000 1234566666668899999999999999999999998876 68899999999765
Q ss_pred ccccccCCCHHHHHHhHhCCCC-cc-----EEEEeCCchhhhhhccCceEEEEeC-ChhHHHHHHHHHcCCCCeEEecCC
Q 012349 204 LEAVPRIITPTQMINRATGVPI-EN-----ILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~-~~-----i~vlsGP~~a~ev~~g~~t~~~~~~-~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+.+.+.++... .. .+.+.+|+.......+...+..... ..+..+.+.++|+..++.++.++|
T Consensus 109 -----------~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~d 177 (305)
T PRK12921 109 -----------EQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSEN 177 (305)
T ss_pred -----------HHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHH
Confidence 45666665321 00 1223345544433222211111111 235677899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCC---CcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhc-cc-CchhH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVT-LL-KGRNA 351 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g---~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T-~~-~sRN~ 351 (465)
+...+|.+.+.|....+.+++.+..+| .+.....++...++|+..++++.|.+..... +-+.+.. +. ...|+
T Consensus 178 i~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~---~~~~~~~~~~~~~~~~ 254 (305)
T PRK12921 178 IRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDV---VEEIVKIFAGAPGDMK 254 (305)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHhccCCCCC
Confidence 999999999999766665665544432 1223347899999999999999998653221 1111100 00 01111
Q ss_pred -HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 352 -WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 352 -~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
++-+++.+|+.+ .+|-+.. .++++++++|+ + +|.++++|.++..
T Consensus 255 sSm~~D~~~gr~t-----------Eid~i~G--~vv~~a~~~gv--------------~-~P~~~~l~~~~~~ 299 (305)
T PRK12921 255 TSMLRDMEKGRPL-----------EIDHLQG--VLLRRARAHGI--------------P-TPILDTVYALLKA 299 (305)
T ss_pred cHHHHHHHcCCcc-----------cHHHHHH--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 233344443322 2343333 69999999995 6 8999999999974
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=201.19 Aligned_cols=286 Identities=16% Similarity=0.141 Sum_probs=190.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|+||+.+|..|+++ | ++|++|+|++. +.++.++ ..+....
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-g-----~~V~~~~r~~~--~~~~~~g-------------------~~~~~~~--- 53 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-G-----FDVHFLLRSDY--EAVRENG-------------------LQVDSVH--- 53 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCH--HHHHhCC-------------------eEEEeCC---
Confidence 348999999999999999999998 7 99999999862 3221111 1111000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
++... .++.++++.+ ....+|+||+|||+.++.++++.+.+++.+ ++.+++++||++
T Consensus 54 ~~~~~-------------------~~~~~~~~~~-~~~~~D~vilavK~~~~~~~~~~l~~~~~~---~~~iv~lqNG~~ 110 (313)
T PRK06249 54 GDFHL-------------------PPVQAYRSAE-DMPPCDWVLVGLKTTANALLAPLIPQVAAP---DAKVLLLQNGLG 110 (313)
T ss_pred CCeee-------------------cCceEEcchh-hcCCCCEEEEEecCCChHhHHHHHhhhcCC---CCEEEEecCCCC
Confidence 00000 1234455554 367899999999999999999999999876 688999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCC-c-----cEEEEeCCchhhhhhccCceEEEEeC-C-----hhHHHHHHHHHcCCCC
Q 012349 202 AELEAVPRIITPTQMINRATGVPI-E-----NILYLGGPNIASEIYNKEYANARICG-A-----EKWRKPLAKFLRRPHF 269 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~-~-----~i~vlsGP~~a~ev~~g~~t~~~~~~-~-----~~~~~~l~~ll~~~g~ 269 (465)
.. +.+.+.++... . ..+...+|++....+.|...+....+ + .+..+.+.++|+..++
T Consensus 111 ~~-----------e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~ 179 (313)
T PRK06249 111 VE-----------EQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGI 179 (313)
T ss_pred cH-----------HHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCC
Confidence 76 56777776321 0 01345577776655555433222222 2 3556789999999999
Q ss_pred eEEecCChHHHHHHHHHHHHHHHHHHhhhcccCC----CcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcc
Q 012349 270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNE----SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTL 345 (465)
Q Consensus 270 ~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g----~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~ 345 (465)
.+..++|+....|.+.+.|..-.+...+.+..+| ++..+ .++...+.|+..++++.|....... +-..+..+
T Consensus 180 ~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~-~l~~~~~~E~~~va~a~Gi~~~~~~---~~~~~~~~ 255 (313)
T PRK06249 180 DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSR-ALIRALMAEVIQGAAACGHTLPEGY---ADHMLAVT 255 (313)
T ss_pred CceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHH-HHHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHh
Confidence 9999999999999999988765555555444432 23444 7999999999999999998632210 10111111
Q ss_pred c-Cchh-HHHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 346 L-KGRN-AWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 346 ~-~sRN-~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
. .+.| -++=+++.+|+.+ .+|.+.. .++++++++|+ + +|+++++|.++..
T Consensus 256 ~~~~~~~sSM~qD~~~gr~t-----------Eid~i~G--~vv~~a~~~Gi--------------~-~P~~~~l~~~l~~ 307 (313)
T PRK06249 256 ERMPDYRPSMYHDFEEGRPL-----------ELEAIYA--NPLAAARAAGC--------------A-MPRVEMLYQALEF 307 (313)
T ss_pred hcCCCCCChHHHHHHCCCcc-----------cHHHHhh--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 0 0001 1222333333322 3555544 89999999995 6 8999999999874
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=198.82 Aligned_cols=296 Identities=16% Similarity=0.162 Sum_probs=187.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ | ++|++|+|++. .+. +++.+. ......+..
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~-G-----~~V~~~~r~~~-~~~---------~~~~g~-------~~~~~~~~~---- 54 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA-G-----ADVTLIGRARI-GDE---------LRAHGL-------TLTDYRGRD---- 54 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc-C-----CcEEEEecHHH-HHH---------HHhcCc-------eeecCCCcc----
Confidence 58999999999999999999999 7 99999999652 232 222110 000000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
. ..+ ...+.++++. +++.++|+||+|||++++.++++.+.+++.+ +++|++++||+..
T Consensus 55 ~-~~~-----------------~~~~~~~~~~-~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~---~~iii~~~nG~~~ 112 (341)
T PRK08229 55 V-RVP-----------------PSAIAFSTDP-AALATADLVLVTVKSAATADAAAALAGHARP---GAVVVSFQNGVRN 112 (341)
T ss_pred e-ecc-----------------cceeEeccCh-hhccCCCEEEEEecCcchHHHHHHHHhhCCC---CCEEEEeCCCCCc
Confidence 0 000 0134556676 4578999999999999999999999998876 6889999999976
Q ss_pred cccccccCCCHHHHHHhHhCCCCc-----cE-EEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 203 ELEAVPRIITPTQMINRATGVPIE-----NI-LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~-----~i-~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
. +.+++.++.... ++ ++..||+.+.....|... +. ..+..+.++++|+..+++++.++|
T Consensus 113 ~-----------~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~---~~-~~~~~~~~~~~l~~~g~~~~~~~d 177 (341)
T PRK08229 113 A-----------DVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALA---IE-ASPALRPFAAAFARAGLPLVTHED 177 (341)
T ss_pred H-----------HHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceE---ec-CCchHHHHHHHHHhcCCCceecch
Confidence 4 456666543110 11 256788887655455422 22 234568899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccC----CCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC---chhhhh-hcccCc
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTN----ESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---LLADTY-VTLLKG 348 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~----g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~---glgDl~-~T~~~s 348 (465)
+.+.+|.|+++|.+ .+...+.+..+ .++..+ .++..++.|+..++++.|.+++.+..+ ++..++ ..+...
T Consensus 178 i~~~~w~Kl~~N~~-~~~~al~~~~~~~l~~~~~~~-~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 255 (341)
T PRK08229 178 MRAVQWAKLLLNLN-NAVNALSGLPLKEELAQRSYR-RCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLF 255 (341)
T ss_pred hHHHHHHHHHHHhc-cHHHHHhCCchHHHhcCchHH-HHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHH
Confidence 99999999999974 33333333332 223444 688999999999999999987654321 111010 000000
Q ss_pred hhHHHHHHHh-cCCC-hhhHhHhh-cCCc-ccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 349 RNAWYGQELA-KGRL-TLDLGDSI-KGKG-MIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 349 RN~~~G~~l~-~g~~-~~~~~~~~-~~~~-~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
+ ..+..+. .... ...+.+++ .+++ .+|-+.. .++++|+++|+ + +|+++++|+++..
T Consensus 256 ~--~~~~~~~~~~~~~~~Sm~~D~~~~r~tEi~~i~G--~i~~~a~~~gv--------------~-~P~~~~~~~~~~~ 315 (341)
T PRK08229 256 R--RLAGRMLAIDPLARSSMSDDLAAGRATEIDWING--EIVRLAGRLGA--------------P-APVNARLCALVHE 315 (341)
T ss_pred H--HHHHHhhccCCccCchHHHHHHcCCcchHHHHhh--HHHHHHHHcCC--------------C-CcHHHHHHHHHHH
Confidence 0 0111111 1100 01122222 2222 3555444 89999999995 6 8999999999853
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-22 Score=200.09 Aligned_cols=283 Identities=13% Similarity=0.053 Sum_probs=185.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.|||+|+|+|++|+.+|..|++. | ++|++++|++++++.++.+ ++ ..+... +
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G-----~~V~lv~r~~~~~~~i~~~--------~G----------l~i~~~----g 53 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-G-----LPVRLILRDRQRLAAYQQA--------GG----------LTLVEQ----G 53 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEechHHHHHHhhc--------CC----------eEEeeC----C
Confidence 47999999999999999999998 7 8999999987766654322 11 011100 0
Q ss_pred C-CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 D-RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~-~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
. ... ++...+ . +.....|+||+|||++++.++++++.+++.+ ++.|++++||+.
T Consensus 54 ~~~~~--------------------~~~~~~-~-~~~~~~D~viv~vK~~~~~~al~~l~~~l~~---~t~vv~lQNGv~ 108 (305)
T PRK05708 54 QASLY--------------------AIPAET-A-DAAEPIHRLLLACKAYDAEPAVASLAHRLAP---GAELLLLQNGLG 108 (305)
T ss_pred cceee--------------------ccCCCC-c-ccccccCEEEEECCHHhHHHHHHHHHhhCCC---CCEEEEEeCCCC
Confidence 0 000 011111 1 1235789999999999999999999999987 789999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCC-ccE-----EEEeCCchhhhhhccCceEEEEeC-ChhHHHHHHHHHcCCCCeEEec
Q 012349 202 AELEAVPRIITPTQMINRATGVPI-ENI-----LYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDN 274 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~-~~i-----~vlsGP~~a~ev~~g~~t~~~~~~-~~~~~~~l~~ll~~~g~~v~~s 274 (465)
.. +.+.+.++... ... +.+.+|+...+.+.+. +.++. ..+..+.+.++|+..++.+..+
T Consensus 109 ~~-----------e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~---~~~G~~~~~~~~~l~~~l~~ag~~~~~~ 174 (305)
T PRK05708 109 SQ-----------DAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGF---TWLGDPRNPTAPAWLDDLREAGIPHEWT 174 (305)
T ss_pred CH-----------HHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEE---EEEcCCCCcchHHHHHHHHhcCCCCccC
Confidence 86 56777776321 010 2233566655544332 22332 3355688999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhh-ccc-CchhH-
Q 012349 275 GDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYV-TLL-KGRNA- 351 (465)
Q Consensus 275 ~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~-T~~-~sRN~- 351 (465)
+|+.+..|.|.+.|..-.+...+.+..+|.--....++...+.|+..++++.|...... .+-+.+. .+. .+.|+
T Consensus 175 ~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~---~~~~~~~~~~~~~~~~~s 251 (305)
T PRK05708 175 VDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAA---NLHEEVQRVIQATAANYS 251 (305)
T ss_pred HHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHH---HHHHHHHHHHHhccCCCc
Confidence 99999999999999866666666555543210011578899999999999999753211 0001110 000 01111
Q ss_pred HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 352 WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 352 ~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
++=+++.+|+++ .+|-+.. .++++++++|+ + +|.++++|..+..
T Consensus 252 SM~qD~~~gR~t-----------Eid~i~G--~vvr~a~~~Gv--------------~-~P~~~~l~~~v~~ 295 (305)
T PRK05708 252 SMYQDVRAGRRT-----------EISYLLG--YACRAADRHGL--------------P-LPRLQHLQQRLVA 295 (305)
T ss_pred HHHHHHHcCCce-----------eehhhhh--HHHHHHHHcCC--------------C-CchHHHHHHHHHH
Confidence 233333333321 3444444 89999999995 6 8999999999864
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-21 Score=194.08 Aligned_cols=283 Identities=20% Similarity=0.241 Sum_probs=196.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|+|+|+||+.+|..|++. | ++|+++.|++. ++++++++| .+.... +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-g-----~~V~~~~R~~~-~~~l~~~GL-------------------~i~~~~---~- 50 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-G-----HDVTLLVRSRR-LEALKKKGL-------------------RIEDEG---G- 50 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEecHHH-HHHHHhCCe-------------------EEecCC---C-
Confidence 7999999999999999999999 7 89999999885 665444332 111100 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
.. . .....+.+. +...++|+||++||+.++.++++.+.+++++ ++.|++++||+.+.
T Consensus 51 -~~------------~------~~~~~~~~~-~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~---~t~vl~lqNG~g~~ 107 (307)
T COG1893 51 -NF------------T------TPVVAATDA-EALGPADLVIVTVKAYQLEEALPSLAPLLGP---NTVVLFLQNGLGHE 107 (307)
T ss_pred -cc------------c------cccccccCh-hhcCCCCEEEEEeccccHHHHHHHhhhcCCC---CcEEEEEeCCCcHH
Confidence 00 0 012222333 4467999999999999999999999999987 78999999999987
Q ss_pred ccccccCCCHHHHHHhHhCCC------CccEEEEeCCchhhhhhccCceEEEEeC-ChhHHHHHHHHHcCCCCeEEecCC
Q 012349 204 LEAVPRIITPTQMINRATGVP------IENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~------~~~i~vlsGP~~a~ev~~g~~t~~~~~~-~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
|.+.+.++.. ....+++.||+.....+.|.+......+ .++..+.+.++|+..++.+.+++|
T Consensus 108 -----------e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 108 -----------EELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred -----------HHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 5566665532 1123577788888877766654443333 456789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCC----CcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhh-hccc--Cch
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNE----SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTY-VTLL--KGR 349 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g----~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~-~T~~--~sR 349 (465)
+....|.+++.|..-...+.+....+| ++.++ .++.+.+.|+..++.+.|.....- .-|.+ ..+. ...
T Consensus 177 i~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~-~l~~~~~~E~~~v~~~~g~~~~~~----~~~~v~~~~~~~~~~ 251 (307)
T COG1893 177 ILAAIWRKLVVNAAINPLTALLDCNNGELLENPEAR-ALIRALVAEVVAVARAEGVELPEE----VVERVLAVIRATDAE 251 (307)
T ss_pred HHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHH-HHHHHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHhcccc
Confidence 999999999999866655555444443 23333 789999999999999998532110 00111 1110 112
Q ss_pred hH-HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 350 NA-WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 350 N~-~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
|+ ++=+++.+|+.+ .+|-+.. +++++++++|+ + +|.+++||.++..
T Consensus 252 ~~sSM~qDl~~gr~t-----------Eid~i~G--~vv~~a~~~gi--------------~-~P~~~~L~~lvk~ 298 (307)
T COG1893 252 NYSSMLQDLEKGRPT-----------EIDAING--AVVRLAKKHGL--------------A-TPVNDTLYALLKA 298 (307)
T ss_pred cCchHHHHHHcCCcc-----------cHHHHhh--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 22 244455555432 2333333 79999999995 6 8999999999974
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-20 Score=181.71 Aligned_cols=275 Identities=17% Similarity=0.193 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCCcccchhhh
Q 012349 53 AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEIL 132 (465)
Q Consensus 53 amGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~ 132 (465)
++|+.+|..|+++ | |+|++|+|+ ++++.++.+++ .+.+.. ++...
T Consensus 1 aiG~~~a~~L~~~-G-----~~V~l~~r~-~~~~~i~~~Gl-------------------~i~~~~---~~~~~------ 45 (293)
T TIGR00745 1 AVGSLYGAYLARA-G-----HDVTLLARG-EQLEALNQEGL-------------------RIVSLG---GEFQF------ 45 (293)
T ss_pred CchHHHHHHHHhC-C-----CcEEEEecH-HHHHHHHHCCc-------------------EEEecC---CcEEE------
Confidence 5899999999998 8 999999997 45554333221 111100 00000
Q ss_pred hccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCC
Q 012349 133 KDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT 212 (465)
Q Consensus 133 ~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~ 212 (465)
.++.+++++++ +.++|+||+|||+++++++++.+++++.+ +++|++++||+...
T Consensus 46 -------------~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~l~~~l~~---~~~iv~~qNG~g~~--------- 99 (293)
T TIGR00745 46 -------------RPVSAATSPEE-LPPADLVIITVKAYQTEEAAALLLPLIGK---NTKVLFLQNGLGHE--------- 99 (293)
T ss_pred -------------cccccccChhh-cCCCCEEEEeccchhHHHHHHHhHhhcCC---CCEEEEccCCCCCH---------
Confidence 02345566655 67899999999999999999999999886 78999999999876
Q ss_pred HHHHHHhHhCCCC------ccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHHHHHHHHH
Q 012349 213 PTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGL 286 (465)
Q Consensus 213 ~se~I~e~lg~~~------~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~gal 286 (465)
+.+.+.++.+. ...+.+.||++......+...+.......+..+.+.++|+..++++..++|+.+.+|.+.+
T Consensus 100 --~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~ 177 (293)
T TIGR00745 100 --ERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEAGIPAELHGDILAAIWKKLL 177 (293)
T ss_pred --HHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhCCCCCEecchHHHHHHHHHh
Confidence 56666665321 1124567888776665554322222222255788999999999999999999999999999
Q ss_pred HHH-HHHHHHhhhcccCC----CcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhc-c-cCchhH-HHHHHHh
Q 012349 287 KNV-YAIGAGMVAALTNE----SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVT-L-LKGRNA-WYGQELA 358 (465)
Q Consensus 287 KNv-iAia~Gi~~gl~~g----~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T-~-~~sRN~-~~G~~l~ 358 (465)
.|+ +...+++++ ..+| ++.. ..++...+.|+..++++.|.+..... +-+.+.+ + ..+.|+ ++-+++.
T Consensus 178 ~N~~~n~l~al~~-~~~g~l~~~~~~-~~l~~~~~~E~~~v~~a~G~~~~~~~---~~~~~~~~~~~~~~~~sSm~~D~~ 252 (293)
T TIGR00745 178 VNAAINPLTALLD-CKNGELLENPEA-RELLRRLMDEVVRVARAEGVDLPDDE---VEELVRAVIRMTAENTSSMLQDLL 252 (293)
T ss_pred heechhHHHHHHC-CccceeccChhH-HHHHHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCCCCChHHHHHH
Confidence 998 444444443 3332 2223 37999999999999999998654321 1121111 1 122222 3445555
Q ss_pred cCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 359 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
+|+.+ | +|- ....++++++++|+ + +|.++.+|.++..
T Consensus 253 ~gr~t-E----------id~--i~G~~v~~a~~~gv--------------~-~P~~~~l~~~~~~ 289 (293)
T TIGR00745 253 RGRRT-E----------IDA--INGAVVRLAEKLGI--------------D-APVNRTLYALLKA 289 (293)
T ss_pred cCCcc-h----------HHH--hccHHHHHHHHcCC--------------C-CChHHHHHHHHHH
Confidence 55432 2 222 22379999999995 6 8999999999964
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.2e-17 Score=168.59 Aligned_cols=224 Identities=17% Similarity=0.172 Sum_probs=157.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||..+|..|+++ | |+|++|+++++.++.+ +++. ++.+.++++
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~-G-----~~V~~~d~~~~~v~~l---------~~g~--------~~~~e~~l~----- 52 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL-G-----HEVTGVDIDQEKVDKL---------NKGK--------SPIYEPGLD----- 52 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc-C-----CeEEEEECCHHHHHHh---------hcCC--------CCCCCCCHH-----
Confidence 6899999999999999999998 7 9999999998877653 3221 333444331
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCCCEE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~~iv 193 (465)
|++.+.... .++.+++++.++++++|+||+|||+. ++.++++.+.+.+++ ++++
T Consensus 53 ------~~~~~~~~~-------g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~---g~lv 116 (411)
T TIGR03026 53 ------ELLAKALAA-------GRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRK---GATV 116 (411)
T ss_pred ------HHHHHhhhc-------CCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCC---CCEE
Confidence 122111000 13677889888889999999999975 478888888888776 5666
Q ss_pred EEeeccccccccccccCCCH-HHHHHhHhCCC-CccEEEEeCCchhhhhhc----cCceEEEEeCChhHHHHHHHHHcCC
Q 012349 194 ISLAKGVEAELEAVPRIITP-TQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRP 267 (465)
Q Consensus 194 Is~~kGi~~~~~~~~~~~~~-se~I~e~lg~~-~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~~~~~~~l~~ll~~~ 267 (465)
|.. .++.+.+ ...+ .+++++..|.. ...+.+.++|.++.+... ..+..++++.+++..+.++++|+..
T Consensus 117 i~~-STv~pgt-----~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~ 190 (411)
T TIGR03026 117 VLE-STVPPGT-----TEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPI 190 (411)
T ss_pred EEe-CcCCCCc-----hHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 644 4777652 2222 23333322321 123568999999887553 2244556677788889999999877
Q ss_pred C-CeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 268 H-FTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 268 g-~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
+ ..++...|+...|..|.+.|.+. +.....++|+..+|+++|.++.++..
T Consensus 191 ~~~~~~~~~~~~~Ae~~Kl~~N~~~------------------a~~ia~~nE~~~la~~~GiD~~~v~~ 241 (411)
T TIGR03026 191 IEDGPVLVTSIETAEMIKLAENTFR------------------AVKIAFANELARICEALGIDVYEVIE 241 (411)
T ss_pred ccCCCEEcCCHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5 46778899999999999999751 12235689999999999999887754
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.7e-16 Score=153.26 Aligned_cols=196 Identities=16% Similarity=0.073 Sum_probs=142.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||.+|+..|.++ |.+.+ .+|++|+|+++.++.+ .+. +
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-g~~~~-~~I~v~~r~~~~~~~l--------~~~-------------~---------- 49 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-NIVSP-DQIICSDLNVSNLKNA--------SDK-------------Y---------- 49 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCCC-ceEEEECCCHHHHHHH--------HHh-------------c----------
Confidence 6899999999999999999987 74332 5799999987543320 000 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
++..+++..+++.++|+||+|||++.+.++++++.+++++ ++++||+..|+..+
T Consensus 50 -----------------------g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~---~~lvISi~AGi~i~ 103 (272)
T PRK12491 50 -----------------------GITITTNNNEVANSADILILSIKPDLYSSVINQIKDQIKN---DVIVVTIAAGKSIK 103 (272)
T ss_pred -----------------------CcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcC---CcEEEEeCCCCcHH
Confidence 2334566777788999999999999999999999998876 67999999999875
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
.|++.++.. .+ +++.+||.+..++.|... +..+ .++++.+.+.++|+..|...++.++.+..
T Consensus 104 ------------~l~~~l~~~-~~-vvR~MPN~~~~vg~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~~~~~E~~~d~- 167 (272)
T PRK12491 104 ------------STENEFDRK-LK-VIRVMPNTPVLVGEGMSA-LCFNEMVTEKDIKEVLNIFNIFGQTEVVNEKLMDV- 167 (272)
T ss_pred ------------HHHHhcCCC-Cc-EEEECCChHHHHcCceEE-EEeCCCCCHHHHHHHHHHHHcCCCEEEEcHHHhhh-
Confidence 477777632 23 689999999999998633 2332 24567889999999999888887775432
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 282 ~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
+...+ +.| | +++...+..+..-+..+|.+.++.
T Consensus 168 --------~tals------gsg-P----Af~~~~~eal~~a~v~~Gl~~~~A 200 (272)
T PRK12491 168 --------VTSIS------GSS-P----AYVYMFIEAMADAAVLGGMPRKQA 200 (272)
T ss_pred --------HHHhc------cCc-H----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 11111 122 3 455566667777777788876544
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=148.04 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=135.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC-chhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP-GRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~-~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.|||+|||+|.||++++..|.++ |.... .++.+++|+ ++..+. +..
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-~~~~~-~~i~~~~~~~~~~~~~--------------------------~~~----- 50 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-SKEYI-EEIIVSNRSNVEKLDQ--------------------------LQA----- 50 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCCCc-CeEEEECCCCHHHHHH--------------------------HHH-----
Confidence 47999999999999999999877 51110 136677764 332221 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
. .++..++|.+++++++|+||+|||++.++++++++.++++ +++|||+++|++
T Consensus 51 ---~--------------------~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~----~~~vis~~~gi~ 103 (245)
T PRK07634 51 ---R--------------------YNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLS----NQLVVTVAAGIG 103 (245)
T ss_pred ---H--------------------cCcEEeCChHHHHhcCCEEEEecCHHHHHHHHHHHHhhcc----CCEEEEECCCCC
Confidence 0 0234567788888999999999999999999999998765 368999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE-eCChhHHHHHHHHHcCCCCeEEecCChHHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (465)
.+ .|++.++.. ...+++|||++.+++.+.+..... +.+++..+.++++|+..|-..++.++..
T Consensus 104 ~~------------~l~~~~~~~--~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~~~e~~~-- 167 (245)
T PRK07634 104 PS------------YLEERLPKG--TPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQLCTEEEV-- 167 (245)
T ss_pred HH------------HHHHHcCCC--CeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEEECHHHc--
Confidence 75 577777632 235689999999999997665433 3466788999999999998887765532
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
+.++..+| .+ + +++...+..+...+...|.+++..
T Consensus 168 -------~~~~a~~g------s~-p----a~~~~~~~a~~~~~~~~Gl~~~~a 202 (245)
T PRK07634 168 -------HQLTAVTG------SA-P----AFLYYFAESLIEATKSYGVDEETA 202 (245)
T ss_pred -------chHHhhhc------ch-H----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 22222111 11 2 334444555556677778776543
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.3e-15 Score=146.53 Aligned_cols=161 Identities=12% Similarity=0.070 Sum_probs=121.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh-hhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~-~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
||||+|||+|+||++++..|.++ |.+.+ ++|.+|+|+++. .+. +.. ..+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~-g~~~~-~~V~~~~r~~~~~~~~---------l~~-------------~~~------ 50 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET-EVATP-EEIILYSSSKNEHFNQ---------LYD-------------KYP------ 50 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCCCc-ccEEEEeCCcHHHHHH---------HHH-------------HcC------
Confidence 47899999999999999999987 63322 689999987531 111 000 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.+.++.+..+++.++|+||+|||++.+.++++++.+++.+ +++|||+++|++
T Consensus 51 -------------------------~~~~~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~---~~~ivS~~aGi~ 102 (277)
T PRK06928 51 -------------------------TVELADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTP---DRHVVSIAAGVS 102 (277)
T ss_pred -------------------------CeEEeCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCC
Confidence 2334567777788999999999999999999999998875 678999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
.+ .|++.++. .+ +++.+||.+..++.|... +..+ .+++..+.+.++|+..|...+++++.
T Consensus 103 ~~------------~l~~~~~~--~~-vvR~MPN~~~~~g~g~t~-~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~ 164 (277)
T PRK06928 103 LD------------DLLEITPG--LQ-VSRLIPSLTSAVGVGTSL-VAHAETVNEANKSRLEETLSHFSHVMTIREEN 164 (277)
T ss_pred HH------------HHHHHcCC--CC-EEEEeCccHHHHhhhcEE-EecCCCCCHHHHHHHHHHHHhCCCEEEEchhh
Confidence 75 46777753 23 689999999999998633 3332 24567889999999999888887664
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=142.42 Aligned_cols=195 Identities=20% Similarity=0.152 Sum_probs=143.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||++||+|+||.+|+..|.++ |.+.+ .+|.+.+|+++..+. +. .
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~-g~~~~-~~I~v~~~~~e~~~~---------l~----------------~------- 46 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS-GALPP-EEIIVTNRSEEKRAA---------LA----------------A------- 46 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc-CCCCc-ceEEEeCCCHHHHHH---------HH----------------H-------
Confidence 47999999999999999999998 74433 589899988764331 00 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
++ ++..++|.++++..+|+||+||||+.+++++.++++ +.+ +++|||+..|+..
T Consensus 47 --~~--------------------g~~~~~~~~~~~~~advv~LavKPq~~~~vl~~l~~-~~~---~~lvISiaAGv~~ 100 (266)
T COG0345 47 --EY--------------------GVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSKLKP-LTK---DKLVISIAAGVSI 100 (266)
T ss_pred --Hc--------------------CCcccCcHHHHHhhCCEEEEEeChHhHHHHHHHhhc-ccC---CCEEEEEeCCCCH
Confidence 01 112267777889999999999999999999999998 444 6899999999987
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChHHH
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (465)
+ .+++.+| . .+ .++.+||++..++.|... +..+ .+++..+.+.++|++-|-.+++.++.+..
T Consensus 101 ~------------~l~~~l~-~-~~-vvR~MPNt~a~vg~g~t~-i~~~~~~~~~~~~~v~~l~~~~G~v~~v~E~~~da 164 (266)
T COG0345 101 E------------TLERLLG-G-LR-VVRVMPNTPALVGAGVTA-ISANANVSEEDKAFVEALLSAVGKVVEVEESLMDA 164 (266)
T ss_pred H------------HHHHHcC-C-Cc-eEEeCCChHHHHcCccee-eecCccCCHHHHHHHHHHHHhcCCeEEechHHhhH
Confidence 5 5788887 2 23 689999999999999743 2322 35677889999999999999988876533
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
+... .+.| | +++...+..|..-+...|.+.++.
T Consensus 165 ---------~Tai------sGSg-P----Ayv~~~iEal~~agv~~Gl~~~~A 197 (266)
T COG0345 165 ---------VTAL------SGSG-P----AYVFLFIEALADAGVRLGLPREEA 197 (266)
T ss_pred ---------HHHH------hcCC-H----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 1111 1222 3 456666677777777888766544
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=145.28 Aligned_cols=219 Identities=18% Similarity=0.143 Sum_probs=154.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.+|...|..||+. | |+|+.++.++++++. +|.+. .|.|-|+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~-G-----HeVv~vDid~~KV~~---------ln~g~--------~PI~EpgLe----- 52 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL-G-----HEVVCVDIDESKVEL---------LNKGI--------SPIYEPGLE----- 52 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHH---------HhCCC--------CCCcCccHH-----
Confidence 8999999999999999999999 8 999999999988876 44443 578888764
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCCCEE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~~iv 193 (465)
|++.++... .++.+|+|.+++++++|++|+|||.. ++++++++|.++++. .+ +
T Consensus 53 ------~ll~~~~~~-------gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~---~~-v 115 (414)
T COG1004 53 ------ELLKENLAS-------GRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDG---KA-V 115 (414)
T ss_pred ------HHHHhcccc-------CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCC---Ce-E
Confidence 455542211 14899999999999999999999753 688889999998875 33 3
Q ss_pred EEeecc-ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhcc----CceEEEEeCChh-HHHHHHHHHcCC
Q 012349 194 ISLAKG-VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICGAEK-WRKPLAKFLRRP 267 (465)
Q Consensus 194 Is~~kG-i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g----~~t~~~~~~~~~-~~~~l~~ll~~~ 267 (465)
.+.|. ++.. +...+.+.+.+.... ..+.+.+.|.|-+|...- .|..++++..++ ..+.+++++...
T Consensus 116 -vV~KSTVPvG-----t~~~v~~~i~~~~~~--~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~ 187 (414)
T COG1004 116 -VVIKSTVPVG-----TTEEVRAKIREENSG--KDFEVASNPEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPF 187 (414)
T ss_pred -EEEcCCCCCC-----chHHHHHHHHhhccc--CCceEecChHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhh
Confidence 34555 3443 333333444433321 246799999999986642 266677776554 467788887542
Q ss_pred ---CCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhc
Q 012349 268 ---HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 334 (465)
Q Consensus 268 ---g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~ 334 (465)
.. ....+|+...|+-+..-| .+.|.-+ .-++||..+|+..|.+...+.
T Consensus 188 ~~~~~-p~l~t~~~~AE~IKyaaN-----------------afLAtKI-sFiNEia~ice~~g~D~~~V~ 238 (414)
T COG1004 188 LRQDV-PILFTDLREAELIKYAAN-----------------AFLATKI-SFINEIANICEKVGADVKQVA 238 (414)
T ss_pred hhcCC-CEEEecchHHHHHHHHHH-----------------HHHHHHH-HHHHHHHHHHHHhCCCHHHHH
Confidence 33 345678888888554444 2233333 458999999999999877654
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-14 Score=139.75 Aligned_cols=188 Identities=14% Similarity=0.112 Sum_probs=132.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||++++..|.++ +.+.+ .++++++|+++. +
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~-~~~~~-~~i~~~~~~~~~-----------------------------~--------- 43 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS-NIIGK-ENIYYHTPSKKN-----------------------------T--------- 43 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC-CCCCc-ceEEEECCChhc-----------------------------C---------
Confidence 7999999999999999999987 53322 357777765421 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
......+..++++++|+||+|||++.++++++++.+++.+ ..|||+++|+..+
T Consensus 44 -----------------------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~~~l~~----~~iIS~~aGi~~~ 96 (260)
T PTZ00431 44 -----------------------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEIKPYLGS----KLLISICGGLNLK 96 (260)
T ss_pred -----------------------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhccC----CEEEEEeCCccHH
Confidence 0123355666778999999999999999999999988764 4789999999864
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
.+++.++. ....++.+||++..+..+... ++.. .+++..+.++++|+..|..+++.++.+..-
T Consensus 97 ------------~l~~~~~~--~~~vvr~mPn~p~~~g~g~t~-i~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d~~ 161 (260)
T PTZ00431 97 ------------TLEEMVGV--EAKIVRVMPNTPSLVGQGSLV-FCANNNVDSTDKKKVIDIFSACGIIQEIKEKDMDIA 161 (260)
T ss_pred ------------HHHHHcCC--CCeEEEECCCchhHhcceeEE-EEeCCCCCHHHHHHHHHHHHhCCcEEEEChHHcchh
Confidence 57777753 223579999999988877533 2332 245678899999999999999887643221
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 282 ~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
. ..+ +.| + +++...+..+..-+.+.|.+.++.
T Consensus 162 t---------a~~------gsg-P----A~~~~~~~al~~~~v~~Gl~~~~a 193 (260)
T PTZ00431 162 T---------AIS------GCG-P----AYVFLFIESLIDAGVKNGLNRDVS 193 (260)
T ss_pred h---------hhc------CCH-H----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 1 111 112 3 345555666667777778766544
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-13 Score=134.02 Aligned_cols=161 Identities=12% Similarity=0.195 Sum_probs=119.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||++++..|.++ |.+.+ ++|.+|+|+++..+. +.. ..+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~-g~~~~-~~v~v~~r~~~~~~~---------~~~-------------~~~-------- 48 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES-GAVKP-SQLTITNRTPAKAYH---------IKE-------------RYP-------- 48 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCHHHHHH---------HHH-------------HcC--------
Confidence 6899999999999999999988 63322 479999998764432 100 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
++..+.+..+++.++|+||+|||++.+.++++++.+++.+ +++||++++|+..+
T Consensus 49 -----------------------g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~---~~~iis~~ag~~~~ 102 (273)
T PRK07680 49 -----------------------GIHVAKTIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTD---EHCLVSITSPISVE 102 (273)
T ss_pred -----------------------CeEEECCHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCC---CCEEEEECCCCCHH
Confidence 2345667777788999999999999999999999998875 67999999998643
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
.+++.++. . .+...||.+.....|.. .++.+ .+++..+.+.++|+..|..+++.+|+..
T Consensus 103 ------------~L~~~~~~---~-~~r~~p~~~~~~~~G~t-~~~~g~~~~~~~~~~~~~ll~~~G~~~~i~e~~~~ 163 (273)
T PRK07680 103 ------------QLETLVPC---Q-VARIIPSITNRALSGAS-LFTFGSRCSEEDQQKLERLFSNISTPLVIEEDITR 163 (273)
T ss_pred ------------HHHHHcCC---C-EEEECCChHHHHhhccE-EEeeCCCCCHHHHHHHHHHHHcCCCEEEEChHhcc
Confidence 46666652 2 46788998876666653 22333 2445678999999999988888888543
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-13 Score=133.86 Aligned_cols=156 Identities=16% Similarity=0.139 Sum_probs=113.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~-~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+|+||++|+..|.++ |...+ .+|++| +|++++.+. + ..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~-g~~~~-~~i~v~~~r~~~~~~~---------~-----------------~~------ 46 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS-GVVPP-SRISTADDSNPARRDV---------F-----------------QS------ 46 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCCc-ceEEEEeCCCHHHHHH---------H-----------------HH------
Confidence 7999999999999999999988 72111 278888 887654321 0 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++..+++..++++++|+||+|+|++.++++++.+.+.+.+ +++|||+++|+..
T Consensus 47 -----------------------~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~l~~~~~~---~~~iIs~~~g~~~ 100 (266)
T PLN02688 47 -----------------------LGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTELRPLLSK---DKLLVSVAAGITL 100 (266)
T ss_pred -----------------------cCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHHHHhhcCC---CCEEEEecCCCcH
Confidence 02345567777788999999999999999999999887765 6789999999866
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecC
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
+ .+.+.++. .+ .+..+|+++..+..+.. .++.. .+++..+.++++|+..|-..+..+
T Consensus 101 ~------------~l~~~~~~--~~-vvr~mP~~~~~~~~~~~-~l~~~~~~~~~~~~~v~~l~~~~G~~~~~~e 159 (266)
T PLN02688 101 A------------DLQEWAGG--RR-VVRVMPNTPCLVGEAAS-VMSLGPAATADDRDLVATLFGAVGKIWVVDE 159 (266)
T ss_pred H------------HHHHHcCC--CC-EEEECCCcHHHHhCceE-EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCH
Confidence 4 35566653 13 45689999988776643 23332 356778999999999887334444
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.7e-13 Score=131.56 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=118.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~-~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+|+||++|+..|.++ |.+.+ ++|++|+|+.+ .++. +.. .
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~-g~~~~-~~v~v~~r~~~~~~~~---------l~~---------------~------- 50 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA-NVVKG-EQITVSNRSNETRLQE---------LHQ---------------K------- 50 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCCCc-ceEEEECCCCHHHHHH---------HHH---------------h-------
Confidence 7999999999999999999988 63322 68999998753 2221 000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++..+.++.+++.++|+||+|||++.+.++++.+.+.+.+ +++|||+++|+..
T Consensus 51 -----------------------~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~---~~liIs~~aGi~~ 104 (279)
T PRK07679 51 -----------------------YGVKGTHNKKELLTDANILFLAMKPKDVAEALIPFKEYIHN---NQLIISLLAGVST 104 (279)
T ss_pred -----------------------cCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEECCCCCH
Confidence 02345667778888999999999999999999999888765 6799999999976
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
+ .+++.++.. . .++...||++..+..+.. .++.+. +++..+.++.+|+..|-.+++.++.
T Consensus 105 ~------------~l~~~~~~~-~-~v~r~mPn~~~~~~~~~t-~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~e~~ 166 (279)
T PRK07679 105 H------------SIRNLLQKD-V-PIIRAMPNTSAAILKSAT-AISPSKHATAEHIQTAKALFETIGLVSVVEEED 166 (279)
T ss_pred H------------HHHHHcCCC-C-eEEEECCCHHHHHhcccE-EEeeCCCCCHHHHHHHHHHHHhCCcEEEeCHHH
Confidence 5 355655421 2 367899999988776643 232222 3567789999999999877777663
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.4e-13 Score=132.93 Aligned_cols=257 Identities=12% Similarity=0.085 Sum_probs=151.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||+|.||.++|..|+++ | ++|++|+|+++.++.+. ..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~-G-----~~V~v~d~~~~~~~~~~---------~~----------------------- 43 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQ-G-----HQLQVFDVNPQAVDALV---------DK----------------------- 43 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHH---------Hc-----------------------
Confidence 5899999999999999999998 7 89999999987554311 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHH---HHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~---l~~~l~~~~~~~ivIs~~kG 199 (465)
....+.++.++++++|+||+|+|++ .+++++.. +.+.+++ ++++|.++.+
T Consensus 44 -----------------------g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~---g~lvid~sT~ 97 (296)
T PRK15461 44 -----------------------GATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSR---DALVIDMSTI 97 (296)
T ss_pred -----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCC---CCEEEECCCC
Confidence 1223456777889999999999987 57888743 4444544 6777777765
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
-+... ..+.+.+.+ .|.......+..||..+. .|..+ ++++++++..++++.+|+.-+-++++..++-.
T Consensus 98 ~p~~~------~~l~~~l~~-~g~~~ldapV~g~~~~a~---~g~l~-~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~G~ 166 (296)
T PRK15461 98 HPLQT------DKLIADMQA-KGFSMMDVPVGRTSDNAI---TGTLL-LLAGGTAEQVERATPILMAMGNELINAGGPGM 166 (296)
T ss_pred CHHHH------HHHHHHHHH-cCCcEEEccCCCCHHHHH---hCcEE-EEECCCHHHHHHHHHHHHHHcCCeEeeCCCCH
Confidence 43321 111122221 121111112333333332 45443 35677888888999999887777777777522
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcc-cCchhH--HHHHH
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTL-LKGRNA--WYGQE 356 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~-~~sRN~--~~G~~ 356 (465)
-...+.+-|. .......++.|...++++.|.+++.+.. ++... ..+.-. ++...
T Consensus 167 g~~~Kl~~N~------------------~~~~~~~~~~Ea~~l~~~~Gld~~~~~~-----~l~~~~~~~~~~~~~~~~~ 223 (296)
T PRK15461 167 GIRVKLINNY------------------MSIALNALSAEAAVLCEALGLSFDVALK-----VMSGTAAGKGHFTTTWPNK 223 (296)
T ss_pred HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHhcCcccChHHHccccch
Confidence 2223333332 1122335668999999999999877642 22211 011000 11111
Q ss_pred HhcCCChhhHhHhhcCCccc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHH
Q 012349 357 LAKGRLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 421 (465)
Q Consensus 357 l~~g~~~~~~~~~~~~~~~v-EG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il 421 (465)
+.++. ....-.+ -..+.+..+.+++++.|+ + +|+.+.+.+++
T Consensus 224 ~~~~~--------~~~~f~~~~~~KD~~l~~~~a~~~g~--------------~-~p~~~~~~~~~ 266 (296)
T PRK15461 224 VLKGD--------LSPAFMIDLAHKDLGIALDVANQLHV--------------P-MPLGAASREVY 266 (296)
T ss_pred hccCC--------CCCCcchHHHHhhHHHHHHHHHHcCC--------------C-ChHHHHHHHHH
Confidence 11111 0000011 223555678889999994 6 79988888777
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=125.63 Aligned_cols=177 Identities=19% Similarity=0.192 Sum_probs=117.8
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+||| +|+||+++|..|+++ | ++|++|+|+++.++.++.+.+ ..+...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~-G-----~~V~v~~r~~~~~~~l~~~~~------------------~~~~~~----- 51 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA-G-----NKIIIGSRDLEKAEEAAAKAL------------------EELGHG----- 51 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-C-----CEEEEEEcCHHHHHHHHHHHH------------------hhcccc-----
Confidence 7999997 899999999999998 7 999999999876554221100 001100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
|+. .++.. ++..+++.++|+||+|||++.++++++++.+.+. +++||+++||++.
T Consensus 52 ------------g~~--------~~~~~-~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~----~~vvI~~~ngi~~ 106 (219)
T TIGR01915 52 ------------GSD--------IKVTG-ADNAEAAKRADVVILAVPWDHVLKTLESLRDELS----GKLVISPVVPLAS 106 (219)
T ss_pred ------------CCC--------ceEEE-eChHHHHhcCCEEEEECCHHHHHHHHHHHHHhcc----CCEEEEeccCcee
Confidence 000 01222 3556778999999999999999999999987665 4789999999986
Q ss_pred ccccc-----ccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCc----eEEEEeCC-hhHHHHHHHHHcCC-CCeE
Q 012349 203 ELEAV-----PRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEY----ANARICGA-EKWRKPLAKFLRRP-HFTV 271 (465)
Q Consensus 203 ~~~~~-----~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~----t~~~~~~~-~~~~~~l~~ll~~~-g~~v 271 (465)
..... ......++.+++.++.. .+ ++...|+++.++..+.. ....++++ ++..+.+.++.+.. ||+.
T Consensus 107 ~~~~~~~~~~~~~~s~~e~l~~~~p~~-~~-VVka~~~~~a~~~~~~~~~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~ 184 (219)
T TIGR01915 107 DGGKGARYLPPEEGSAAEQAAALLPET-SR-VVAAFHNLSAVLLQDVDDEVDCDVLVCGDDEEAKEVVAELAGRIDGLRA 184 (219)
T ss_pred cCCCCceecCCCCCcHHHHHHHhCCCC-Ce-EeeccccCCHHHhcCCCCCCCCCEEEECCCHHHHHHHHHHHHhcCCCCc
Confidence 21000 01134568888888631 22 56777888776554321 11234554 45567888999887 9987
Q ss_pred EecCC
Q 012349 272 WDNGD 276 (465)
Q Consensus 272 ~~s~D 276 (465)
.....
T Consensus 185 vd~G~ 189 (219)
T TIGR01915 185 LDAGP 189 (219)
T ss_pred ccCCc
Confidence 54443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-12 Score=126.38 Aligned_cols=155 Identities=20% Similarity=0.215 Sum_probs=113.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||+|||+|+||++++..|.++ |. . .++|.+|+|+++..+++ ... +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~-g~-~-~~~v~v~~r~~~~~~~~---------~~~------------~--------- 48 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS-GV-P-AKDIIVSDPSPEKRAAL---------AEE------------Y--------- 48 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC-CC-C-cceEEEEcCCHHHHHHH---------HHh------------c---------
Confidence 68999999999999999999987 52 1 15799999987654321 100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
++.++.+.++++.++|+||+|||++.++++++++.+++ + +.|||+++|+..
T Consensus 49 ------------------------g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~-~----~~vvs~~~gi~~ 99 (267)
T PRK11880 49 ------------------------GVRAATDNQEAAQEADVVVLAVKPQVMEEVLSELKGQL-D----KLVVSIAAGVTL 99 (267)
T ss_pred ------------------------CCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhc-C----CEEEEecCCCCH
Confidence 12344566677889999999999999999999998876 3 579999999965
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEec
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN 274 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s 274 (465)
+ .+++.++.. .+ .+...|+++..+..+. +.++.+ .+++..+.++.+|+..|..+++.
T Consensus 100 ~------------~l~~~~~~~-~~-iv~~~P~~p~~~~~~~-~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~~ 158 (267)
T PRK11880 100 A------------RLERLLGAD-LP-VVRAMPNTPALVGAGM-TALTANALVSAEDRELVENLLSAFGKVVWVD 158 (267)
T ss_pred H------------HHHHhcCCC-Cc-EEEecCCchHHHcCce-EEEecCCCCCHHHHHHHHHHHHhCCeEEEEC
Confidence 3 466666522 23 4668999998776663 333333 25677789999999999766665
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-12 Score=127.62 Aligned_cols=256 Identities=15% Similarity=0.129 Sum_probs=151.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|.||..+|..|+++ | ++|.+|+|+++..+.+ .+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~-g-----~~v~~~d~~~~~~~~~---------~~----------------------- 43 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVYDRNPEAVAEV---------IA----------------------- 43 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHH---------HH-----------------------
Confidence 47999999999999999999998 7 8999999987644321 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH---HHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl---~~l~~~l~~~~~~~ivIs~~k 198 (465)
.....+++++++++++|+||+|+|. ..++.++ +.+.+.+.+ +++++.++.
T Consensus 44 -----------------------~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iiid~st 97 (296)
T PRK11559 44 -----------------------AGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVVIDMSS 97 (296)
T ss_pred -----------------------CCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCC---CcEEEECCC
Confidence 0123456777888999999999994 5566665 446666655 677776653
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhh--hccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev--~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
. .+.+ ++.+.+.+... .+.++..|-+..+. ..+..+ ++++++++..+.++.+|+..+.++....+
T Consensus 98 ~-~~~~---------~~~l~~~~~~~--g~~~~d~pv~g~~~~a~~g~l~-i~~gg~~~~~~~~~~~l~~~~~~~~~~g~ 164 (296)
T PRK11559 98 I-APLA---------SREIAAALKAK--GIEMLDAPVSGGEPKAIDGTLS-VMVGGDKAIFDKYYDLMKAMAGSVVHTGD 164 (296)
T ss_pred C-CHHH---------HHHHHHHHHHc--CCcEEEcCCCCCHHHHhhCcEE-EEECCCHHHHHHHHHHHHHhcCCeEEeCC
Confidence 3 3321 12333333211 11234444332211 133333 44567777788999999887777665555
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhccc-CchhH-HHH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL-KGRNA-WYG 354 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~-~sRN~-~~G 354 (465)
.-.-+..+.+-|.+. +....+++|+..+++..|.+++++.. .+.+.. .|.-. ..+
T Consensus 165 ~g~a~~~Kl~~n~~~------------------~~~~~~~~Ea~~l~~~~Gi~~~~~~~-----~l~~~~~~s~~~~~~~ 221 (296)
T PRK11559 165 IGAGNVTKLANQVIV------------------ALNIAAMSEALVLATKAGVNPDLVYQ-----AIRGGLAGSTVLDAKA 221 (296)
T ss_pred cCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCHHHHHH-----HHhcCcccCHHHHhhc
Confidence 433344444444211 12235688999999999998876642 111110 11100 011
Q ss_pred HHHhcCCChhhHhHhhcCCcccch-HHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHH
Q 012349 355 QELAKGRLTLDLGDSIKGKGMIQG-ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL 421 (465)
Q Consensus 355 ~~l~~g~~~~~~~~~~~~~~~vEG-~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il 421 (465)
..+.++ .. ..+-+++- ......+.+++++.|+ + +|+.+.+++++
T Consensus 222 ~~~~~~-d~-------~~~f~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~ 266 (296)
T PRK11559 222 PMVMDR-NF-------KPGFRIDLHIKDLANALDTSHGVGA--------------P-LPLTAAVMEMM 266 (296)
T ss_pred hHhhcC-CC-------CCCcchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHH
Confidence 111111 11 00112332 2335678899999994 6 79999999887
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=130.16 Aligned_cols=261 Identities=15% Similarity=0.094 Sum_probs=155.8
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCCccc
Q 012349 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLH 127 (465)
Q Consensus 48 IIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~ 127 (465)
|||+|.||.++|..|+++ | ++|++|+|+++.++.+ ...
T Consensus 1 ~IGlG~mG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l---------~~~--------------------------- 38 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-G-----HPVRVFDLFPDAVEEA---------VAA--------------------------- 38 (288)
T ss_pred CCcccHhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHH---------HHc---------------------------
Confidence 689999999999999998 7 8999999998654431 100
Q ss_pred chhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH---HHHHHhhhccCCCCEEEEeecccccc
Q 012349 128 ADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl---~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
+...++++.++++++|+||+|||+ +.+++++ +.+.+.+.+ ++++|.++ ++.++
T Consensus 39 -------------------g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~---g~~vid~s-t~~p~ 95 (288)
T TIGR01692 39 -------------------GAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAK---GSLLIDCS-TIDPD 95 (288)
T ss_pred -------------------CCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCC---CCEEEECC-CCCHH
Confidence 123456778889999999999997 6788888 677777665 67787777 77765
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHHHHHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~ 283 (465)
+ ...+++.+.+ .|.......+..||..+. .|..+ ++++++++..++++.+|+..+-++++..+.-.-+..
T Consensus 96 ~-----~~~~~~~~~~-~g~~~vdaPv~Gg~~~a~---~g~l~-~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~ 165 (288)
T TIGR01692 96 S-----ARKLAELAAA-HGAVFMDAPVSGGVGGAR---AGTLT-FMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAA 165 (288)
T ss_pred H-----HHHHHHHHHH-cCCcEEECCCCCCHHHHh---hCcEE-EEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHH
Confidence 2 2334444433 232111112333343332 34333 345677777888999998877666666654333334
Q ss_pred HHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcccCchhHHHHHHHhcCCCh
Q 012349 284 GGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLT 363 (465)
Q Consensus 284 galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~G~~l~~g~~~ 363 (465)
|++-|.+ ......++.|...++++.|.+++.+. |.+.+.. +++..+-.........
T Consensus 166 Kl~~n~~------------------~~~~~~~~~Ea~~la~~~Gld~~~~~-----~~~~~~~-~~s~~~~~~~~~~~~~ 221 (288)
T TIGR01692 166 KICNNML------------------LGISMIGTAEAMALGEKLGLDPKVLF-----EIANTSS-GRCWSSDTYNPVPGVM 221 (288)
T ss_pred HHHHHHH------------------HHHHHHHHHHHHHHHHHcCCCHHHHH-----HHHhcCC-ccCcHHHHhCCCcccc
Confidence 4444421 11223568899999999999987764 3333321 1121111100000000
Q ss_pred h-h-HhHhhcCCc-ccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 364 L-D-LGDSIKGKG-MIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 364 ~-~-~~~~~~~~~-~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
. . ........- .--..+.++.+.+++++.|+ + +|+.+.+.++..
T Consensus 222 ~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 268 (288)
T TIGR01692 222 PQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGA--------------P-TPLGALARQLYS 268 (288)
T ss_pred ccccccCCCCCCcchHHHHhhHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 0 0 000011011 12334566678899999994 6 799888887763
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-12 Score=127.89 Aligned_cols=200 Identities=16% Similarity=0.189 Sum_probs=135.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||++||.|.||..+|..|.++ | |+|++|+|++++... ....
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a-G-----~~v~v~~r~~~ka~~--------~~~~------------------------ 42 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA-G-----HEVTVYNRTPEKAAE--------LLAA------------------------ 42 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC-C-----CEEEEEeCChhhhhH--------HHHH------------------------
Confidence 6899999999999999999999 8 999999999875221 0110
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH---HHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE---EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~---~l~~~l~~~~~~~ivIs~~kG 199 (465)
.......++.+++..+|+||.++|. .++++++- .+.+.+++ ++++|.++ .
T Consensus 43 ----------------------~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~---G~i~IDmS-T 96 (286)
T COG2084 43 ----------------------AGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKP---GAIVIDMS-T 96 (286)
T ss_pred ----------------------cCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCC---CCEEEECC-C
Confidence 0233456677889999999999985 57888884 46666666 67777666 4
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
++++. .+.+.+.+++ .|.......|..|+--+. .|..+ ++++++++..++++.+|+..+-+++...+.-.
T Consensus 97 isp~~-----a~~~a~~~~~-~G~~~lDAPVsGg~~~A~---~GtLt-imvGG~~~~f~r~~pvl~~~g~~i~~~G~~G~ 166 (286)
T COG2084 97 ISPET-----ARELAAALAA-KGLEFLDAPVSGGVPGAA---AGTLT-IMVGGDAEAFERAKPVLEAMGKNIVHVGPVGA 166 (286)
T ss_pred CCHHH-----HHHHHHHHHh-cCCcEEecCccCCchhhh---hCceE-EEeCCCHHHHHHHHHHHHHhcCceEEECCCCc
Confidence 55541 2233333333 332211123444444443 45443 45678888999999999999998888877722
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
-...|.+.|++. .....++.|...++++.|.+++.+..
T Consensus 167 G~~~Kl~nn~l~------------------~~~~~a~aEAl~la~k~Gld~~~~~~ 204 (286)
T COG2084 167 GQAAKLANNILL------------------AGNIAALAEALALAEKAGLDPDVVLE 204 (286)
T ss_pred hHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 333444444321 23346788999999999999987754
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=124.03 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=122.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
||+|||+|.||+.+|..|+++ | ++|++|+|+++..+.+ ...
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G-----~~V~~~dr~~~~~~~~---------~~~------------------------ 41 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-G-----YQLHVTTIGPEVADEL---------LAA------------------------ 41 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHH---------HHC------------------------
Confidence 599999999999999999998 7 8999999998654421 100
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH---HHHHHhhhccCCCCEEEEeeccc
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl---~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+....++..++++++|+||+|+|.. .+++++ +.+.+.+.+ +++++.++.+
T Consensus 42 ----------------------g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~---g~iivd~st~- 95 (291)
T TIGR01505 42 ----------------------GAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKP---GKTLVDMSSI- 95 (291)
T ss_pred ----------------------CCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCC---CCEEEECCCC-
Confidence 1112356677889999999999974 566665 334455554 5777766533
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhh--ccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~--~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
.+.+ ++.+.+.+.... +.++..|-+..+.. .+.. .++++++++..+.++.+|+..+.+++...+.-
T Consensus 96 ~~~~---------~~~l~~~l~~~g--~~~~~~pv~g~~~~a~~g~l-~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g 163 (291)
T TIGR01505 96 SPIE---------SKRFAKAVKEKG--IDYLDAPVSGGEIGAIEGTL-SIMVGGDQAVFDRVKPLFEALGKNIVLVGGNG 163 (291)
T ss_pred CHHH---------HHHHHHHHHHcC--CCEEecCCCCCHHHHhcCCE-EEEecCCHHHHHHHHHHHHHhcCCeEEeCCCC
Confidence 3321 122333332111 12344565433322 2332 24556777778899999998887776655432
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 279 THEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 279 gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
..+..+++-| ........+++|+..++++.|.+++++..
T Consensus 164 ~a~~~Kl~~n------------------~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~ 202 (291)
T TIGR01505 164 DGQTCKVANQ------------------IIVALNIEAVSEALVFASKAGVDPVRVRQ 202 (291)
T ss_pred HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2233333322 12233456789999999999999887653
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=128.58 Aligned_cols=218 Identities=14% Similarity=-0.007 Sum_probs=137.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|.||..+|..|+++ | ++|+.|++++++++.+ +.+. .+.+.+++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~-G-----~~V~~~D~~~~~v~~l---------~~g~--------~~~~e~~l~---- 55 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR-Q-----KQVIGVDINQHAVDTI---------NRGE--------IHIVEPDLD---- 55 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC-C-----CEEEEEeCCHHHHHHH---------HCCC--------CCcCCCCHH----
Confidence 48999999999999999999999 8 9999999999877653 3221 122222221
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------chHHHHHHHHHHhhhccCCCCE
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVPV 192 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------~~l~~vl~~l~~~l~~~~~~~i 192 (465)
+++.+.... ..+.++++. ++||+||+|||. ..+.++++.+.+++++ +++
T Consensus 56 -------~~l~~~~~~-------g~l~~~~~~----~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~---g~i 114 (415)
T PRK11064 56 -------MVVKTAVEG-------GYLRATTTP----EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKK---GDL 114 (415)
T ss_pred -------HHHHHHhhc-------Cceeeeccc----ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCC---CCE
Confidence 122110000 134555543 479999999997 5888888999998876 565
Q ss_pred EEEeeccccccccccccCCCHHHHHHhHhCC--------CCccEEEEeCCchhhhhhc----cCceEEEEeC-ChhHHHH
Q 012349 193 IISLAKGVEAELEAVPRIITPTQMINRATGV--------PIENILYLGGPNIASEIYN----KEYANARICG-AEKWRKP 259 (465)
Q Consensus 193 vIs~~kGi~~~~~~~~~~~~~se~I~e~lg~--------~~~~i~vlsGP~~a~ev~~----g~~t~~~~~~-~~~~~~~ 259 (465)
||..+ .+.+. +.+.+...+.+.-.. ....+.+.+.|.+..+... +.+..+ +++ +++..++
T Consensus 115 VI~~S-Tv~pg-----tt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~v-vgG~~~~~~~~ 187 (415)
T PRK11064 115 VILES-TSPVG-----ATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRV-IGGMTPVCSAR 187 (415)
T ss_pred EEEeC-CCCCC-----HHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEE-EEeCCHHHHHH
Confidence 55333 55554 222233333332110 0123556788877654321 223333 354 7777888
Q ss_pred HHHHHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 260 l~~ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
++++|+..+-.+....++...|..|.+-|.+ + +.-...++|+..+|+.+|.++..+
T Consensus 188 ~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~-----------------~-a~~ia~~nE~~~lae~~GiD~~~v 243 (415)
T PRK11064 188 ASELYKIFLEGECVVTNSRTAEMCKLTENSF-----------------R-DVNIAFANELSLICADQGINVWEL 243 (415)
T ss_pred HHHHHHHhcCCCeeeCCHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHhCCCHHHH
Confidence 8888887654555667888888888777742 1 223456889999999999875543
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-12 Score=106.42 Aligned_cols=94 Identities=27% Similarity=0.334 Sum_probs=71.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEE-ecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~-~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
||+|||+|+||++++..|.++ |. . .++|.++ +|+++.++++. +. .
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-g~-~-~~~v~~~~~r~~~~~~~~~---------~~-------------~--------- 46 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-GI-K-PHEVIIVSSRSPEKAAELA---------KE-------------Y--------- 46 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TS---GGEEEEEEESSHHHHHHHH---------HH-------------C---------
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC-C-ceeEEeeccCcHHHHHHHH---------Hh-------------h---------
Confidence 799999999999999999998 64 3 3789966 88887554310 00 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+..++. +..++++++|+||+|||++.+.++++++ +...+ ++++||+++|
T Consensus 47 -----------------------~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~---~~~vis~~ag 96 (96)
T PF03807_consen 47 -----------------------GVQATADDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLK---GKLVISIAAG 96 (96)
T ss_dssp -----------------------TTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHT---TSEEEEESTT
T ss_pred -----------------------ccccccCChHHhhccCCEEEEEECHHHHHHHHHHH-hhccC---CCEEEEeCCC
Confidence 123333 6778899999999999999999999999 55555 6899999987
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.5e-11 Score=124.16 Aligned_cols=210 Identities=15% Similarity=0.118 Sum_probs=134.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||..+|..++ . | |+|++|++++++++.++ ++. .+.+-+++.
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~-G-----~~VigvD~d~~kv~~l~---------~g~--------~~~~e~~l~----- 51 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q-N-----HEVVALDILPSRVAMLN---------DRI--------SPIVDKEIQ----- 51 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h-C-----CcEEEEECCHHHHHHHH---------cCC--------CCCCCcCHH-----
Confidence 68999999999999998887 5 6 89999999998877643 221 122233321
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-----------hHHHHHHHHHHhhhccCCCCE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-----------~l~~vl~~l~~~l~~~~~~~i 192 (465)
+++..+ ...+..+++..+++.++|+||+|||.. +++++++.|.+ +++ +++
T Consensus 52 ------~~l~~~---------~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~---g~l 112 (388)
T PRK15057 52 ------QFLQSD---------KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INP---YAV 112 (388)
T ss_pred ------HHHHhC---------CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCC---CCE
Confidence 111110 013556777778889999999999964 67788888876 454 555
Q ss_pred EEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc----cCceEEEEeCChhHHHHHHHHHcCCC
Q 012349 193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRRPH 268 (465)
Q Consensus 193 vIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~~~~~~~l~~ll~~~g 268 (465)
|| ....+.+.+ ++.+.+.+.. ..+.++|.++.+... ..+..++++.+++.++++.++|....
T Consensus 113 VV-~~STv~pgt---------t~~l~~~~~~----~~v~~~PE~l~~G~a~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~ 178 (388)
T PRK15057 113 MV-IKSTVPVGF---------TAAMHKKYRT----ENIIFSPEFLREGKALYDNLHPSRIVIGERSERAERFAALLQEGA 178 (388)
T ss_pred EE-EeeecCCch---------HHHHHHHhhc----CcEEECcccccCCcccccccCCCEEEEEcCcHHHHHHHHHHHhhh
Confidence 54 333455542 1334333321 135668998876442 12344566777777777877775422
Q ss_pred C--eEE-ecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 269 F--TVW-DNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 269 ~--~v~-~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
+ .+. +..|+...|+.|.+-|.+ + +.-...++|+..+|+++|.+...+
T Consensus 179 ~~~~~~~~~~~~~~AE~~Kl~~N~~-----------------~-a~~Ia~~NE~a~lae~~GiD~~eV 228 (388)
T PRK15057 179 IKQNIPTLFTDSTEAEAIKLFANTY-----------------L-AMRVAYFNELDSYAESLGLNTRQI 228 (388)
T ss_pred hcCCCceeeCCHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHhCcCHHHH
Confidence 1 222 467888888888777741 2 223356889999999999876544
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-11 Score=122.26 Aligned_cols=179 Identities=16% Similarity=0.182 Sum_probs=118.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++||+|||+|.||+++|..|+++ | ++|++|+++++.+++++.. +.... ..+.+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~-g-----~~V~~~d~~~~~~~~~~~~-----~~~~~---------~~~~~~------ 57 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK-G-----LQVVLIDVMEGALERARGV-----IERAL---------GVYAPL------ 57 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-----HHHHH---------HHhhhc------
Confidence 47899999999999999999988 7 8999999998776653321 11000 000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.. . ...+.++.+++|++++++++|+||+|||++. ...++.++.+++++ +++|+|.+.|+
T Consensus 58 --~~------~--------~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~ii~s~tsg~ 118 (311)
T PRK06130 58 --GI------A--------SAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDP---DTIFATNTSGL 118 (311)
T ss_pred --cc------H--------HHHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCC---CcEEEECCCCC
Confidence 00 0 0000135677888888899999999999874 78899999888776 67787899887
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEec-CCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-GDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s-~Di 277 (465)
... .+.+.++.+ .+ ++...|+.+..... ...++.+ .+++..+.+.++|+..|..+... .|.
T Consensus 119 ~~~------------~l~~~~~~~-~~-~ig~h~~~p~~~~~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~ 182 (311)
T PRK06130 119 PIT------------AIAQAVTRP-ER-FVGTHFFTPADVIP--LVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDI 182 (311)
T ss_pred CHH------------HHHhhcCCc-cc-EEEEccCCCCccCc--eEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 653 355555432 22 34455666554332 2222222 25677899999999999876655 577
Q ss_pred HHHHH
Q 012349 278 VTHEV 282 (465)
Q Consensus 278 ~gve~ 282 (465)
.|..+
T Consensus 183 ~G~i~ 187 (311)
T PRK06130 183 PGFIA 187 (311)
T ss_pred CCcHH
Confidence 66533
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=122.31 Aligned_cols=201 Identities=15% Similarity=0.129 Sum_probs=124.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|||+|.||+++|..|+.+ | ++|++|+++++.+++... .+++....+....+.. .....
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~-----~i~~~~~~l~~~~~~g-~~~~~----- 65 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART-G-----YDVTIVDVSEEILKNAME-----LIESGPYGLRNLVEKG-KMSED----- 65 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHH-----HHHhhhhhHHHHHHcC-CCCHH-----
Confidence 36899999999999999999998 7 899999999987664221 1111100000000000 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.. +++ +.++.++++. ++++++|+||+|+|++. ..++++++.+++++ +++++|.++|+
T Consensus 66 --~~--~~~-------------~~~i~~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~---~~il~S~tsg~ 124 (291)
T PRK06035 66 --EA--KAI-------------MARIRTSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSP---ETIIASNTSGI 124 (291)
T ss_pred --HH--HHH-------------HhCcEeeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEEcCCCC
Confidence 00 000 0146677777 56899999999999885 78899999998876 78899999998
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
... .+.+.+..+ .++ +-..|..+..+... ..++.+ .+++..+.+..+++..|..+....|.-
T Consensus 125 ~~~------------~la~~~~~~-~r~-ig~hf~~P~~~~~~--vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~p 188 (291)
T PRK06035 125 MIA------------EIATALERK-DRF-IGMHWFNPAPVMKL--IEVVRAALTSEETFNTTVELSKKIGKIPIEVADVP 188 (291)
T ss_pred CHH------------HHHhhcCCc-ccE-EEEecCCCcccCcc--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCC
Confidence 654 355555432 222 22233333222221 112222 256778899999999998888778876
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012349 279 THEVMGGLKNVYAIGAGMV 297 (465)
Q Consensus 279 gve~~galKNviAia~Gi~ 297 (465)
|-....++-|.+.-+.-++
T Consensus 189 gfv~nRl~~~~~~ea~~~~ 207 (291)
T PRK06035 189 GFFTTRFIEGWLLEAIRSF 207 (291)
T ss_pred CeeHHHHHHHHHHHHHHHH
Confidence 6555555555555555554
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-10 Score=114.47 Aligned_cols=196 Identities=13% Similarity=0.066 Sum_probs=119.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||+++|..|+++ | ++|.+|+|+++.++.+. +.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~-g-----~~V~~~dr~~~~~~~l~---------~~g---------------------- 43 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR-G-----HDCVGYDHDQDAVKAMK---------EDR---------------------- 43 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHH---------HcC----------------------
Confidence 6899999999999999999998 7 99999999987655321 100
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCH---HHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNL---QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl---~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.....++ .+.+..+|+||++||+..++++++++.+.+++ ++++|.++++.
T Consensus 44 ------------------------~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~~~l~~---g~ivid~st~~ 96 (298)
T TIGR00872 44 ------------------------TTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELAPTLEK---GDIVIDGGNSY 96 (298)
T ss_pred ------------------------CcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHHhhCCC---CCEEEECCCCC
Confidence 0011222 33456789999999999999999999998876 67899988876
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCC---eEEecCCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNGDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~---~v~~s~Di 277 (465)
...+ .. ..+.+.+ .|.......+..||.-+. .| + .++++++++..+.++.+|+..+- .+++..+.
T Consensus 97 ~~~t-----~~-~~~~~~~-~g~~~vda~vsGg~~~a~---~G-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~ 164 (298)
T TIGR00872 97 YKDS-----LR-RYKLLKE-KGIHLLDCGTSGGVWGRE---RG-Y-CFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPC 164 (298)
T ss_pred cccH-----HH-HHHHHHh-cCCeEEecCCCCCHHHHh---cC-C-eeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCc
Confidence 5442 11 1111221 121111112222222222 34 3 34677788778888888875442 24444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhC--CCcchh
Q 012349 278 VTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLA--EEPEKL 333 (465)
Q Consensus 278 ~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G--~~~~t~ 333 (465)
-.-...+.+.|.+. .-+..++.|...++++.| .+++++
T Consensus 165 G~~~~~K~~~n~l~------------------~~~~~~~aE~~~l~~~~g~~ld~~~~ 204 (298)
T TIGR00872 165 GSGHFVKMVHNGIE------------------YGMMAAIAEGFEILRNSQFDFDIPEV 204 (298)
T ss_pred cHhHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCcCHHHH
Confidence 22233444444211 122355667777777654 455554
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-11 Score=117.86 Aligned_cols=190 Identities=13% Similarity=0.061 Sum_probs=124.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||.+++..|.+. |. .. ..+.+|+|+++..+.+ .. .++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~-g~-~~-~~i~v~~r~~~~~~~l---------~~-------------~~~-------- 47 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS-PA-DV-SEIIVSPRNAQIAARL---------AE-------------RFP-------- 47 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC-CC-Ch-heEEEECCCHHHHHHH---------HH-------------HcC--------
Confidence 5899999999999999999987 62 11 3468898887543320 00 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
...++++.+++++++|+||+|||++.+.++++++. +.+ ++++||+..|+..+
T Consensus 48 -----------------------~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~--~~~---~~~vis~~ag~~~~ 99 (258)
T PRK06476 48 -----------------------KVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRALR--FRP---GQTVISVIAATDRA 99 (258)
T ss_pred -----------------------CceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHHhc--cCC---CCEEEEECCCCCHH
Confidence 13455677777889999999999999999998873 333 67899999887664
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHHHHHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~ 283 (465)
.+++.++.. ...++..|+++.....+. +. +.... +.++++|+..|-.++..+.
T Consensus 100 ------------~l~~~~~~~--~~~~r~~P~~~~a~~~g~-t~--~~~~~---~~~~~l~~~lG~~~~~~~e------- 152 (258)
T PRK06476 100 ------------ALLEWIGHD--VKLVRAIPLPFVAERKGV-TA--IYPPD---PFVAALFDALGTAVECDSE------- 152 (258)
T ss_pred ------------HHHHHhCCC--CCEEEECCCChhhhCCCC-eE--ecCCH---HHHHHHHHhcCCcEEECCh-------
Confidence 577766532 235788999887655543 22 22222 4788888888877665422
Q ss_pred HHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhc
Q 012349 284 GGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 334 (465)
Q Consensus 284 galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~ 334 (465)
..+|.+..+++ + + +.+...+.|+...+.+.|.+++...
T Consensus 153 -~~~d~~~a~~s-------~-~----a~~~~~~~~~~~~~~~~Gl~~~~a~ 190 (258)
T PRK06476 153 -EEYDLLAAASA-------L-M----ATYFGILETATGWLEEQGLKRQKAR 190 (258)
T ss_pred -Hhccceeehhc-------c-H----HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 11222211111 0 1 2223467888899999999876543
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-10 Score=117.15 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=125.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||+++|..|+++ | ++|.+|+|+++.++.+ .+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~---------~~~----------------------- 42 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG-G-----HEVVGYDRNPEAVEAL---------AEE----------------------- 42 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHH---------HHC-----------------------
Confidence 6899999999999999999998 7 8999999998655431 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~---aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+...+++++++++. +|+||+++|.. .++++++.+.+.+++ ++++|.++++
T Consensus 43 -----------------------g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l~~~l~~---g~ivid~st~ 96 (301)
T PRK09599 43 -----------------------GATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDELAPLLSP---GDIVIDGGNS 96 (301)
T ss_pred -----------------------CCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence 12344566666554 69999999987 889999988888776 6788888766
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCC----eEEecC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF----TVWDNG 275 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~----~v~~s~ 275 (465)
-...+ ..+.+.+++ .|.......+..||.-+. .| . .++++++++..++++.+|+..+- ++++..
T Consensus 97 ~~~~~------~~~~~~~~~-~g~~~~dapvsG~~~~a~---~g-~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~G 164 (301)
T PRK09599 97 YYKDD------IRRAELLAE-KGIHFVDVGTSGGVWGLE---RG-Y-CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAG 164 (301)
T ss_pred ChhHH------HHHHHHHHH-cCCEEEeCCCCcCHHHHh---cC-C-eEEecCCHHHHHHHHHHHHHHcccccCCeEeEC
Confidence 44321 112222222 221111112333332222 45 3 35677888888888888887665 556666
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHH--hCCCcchhc
Q 012349 276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL--LAEEPEKLA 334 (465)
Q Consensus 276 Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a--~G~~~~t~~ 334 (465)
++=.-...+.+.|.+. .-+..++.|...++++ .|.+++++.
T Consensus 165 ~~G~g~~~Kl~~n~l~------------------~~~~~~~aEa~~l~~~~~~gld~~~~~ 207 (301)
T PRK09599 165 PVGAGHFVKMVHNGIE------------------YGMMQAYAEGFELLEASRFDLDLAAVA 207 (301)
T ss_pred CCcHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6422233444444211 1233567788888888 788776654
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-10 Score=122.92 Aligned_cols=221 Identities=11% Similarity=0.100 Sum_probs=140.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||.|.||..+|..|++. ++|+.|++++++++.+ +++. .+.+.++++
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~~-------~~V~g~D~~~~~ve~l---------~~G~--------~~~~e~~~~--- 57 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGKS-------RQVVGFDVNKKRILEL---------KNGV--------DVNLETTEE--- 57 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhcC-------CEEEEEeCCHHHHHHH---------HCcC--------CCCCCCCHH---
Confidence 458999999999999999998753 8999999999887763 3221 122222211
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCCC
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVP 191 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~~ 191 (465)
|+... ..+.++++.+ ++++||++|+|||.. ++....+.|.+++++ ++
T Consensus 58 --------~l~~~-----------g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~---g~ 114 (425)
T PRK15182 58 --------ELREA-----------RYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR---GD 114 (425)
T ss_pred --------HHHhh-----------CCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC---CC
Confidence 12111 1456777775 589999999999853 555556788888876 56
Q ss_pred EEEEeeccccccccccccCCCHHHHHHhHhCCC-CccEEEEeCCchhhhhhcc----CceEEEEeCChhHHHHHHHHHcC
Q 012349 192 VIISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYNK----EYANARICGAEKWRKPLAKFLRR 266 (465)
Q Consensus 192 ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~-~~~i~vlsGP~~a~ev~~g----~~t~~~~~~~~~~~~~l~~ll~~ 266 (465)
+|| ....+.+.+ +.......+.+..|.. ...+.+.+-|.+..+.... .+..++.+.+++..+.++.+++.
T Consensus 115 lVI-~~STv~pgt----t~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~ 189 (425)
T PRK15182 115 IVV-YESTVYPGC----TEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSGSTAQIAELIDEVYQQ 189 (425)
T ss_pred EEE-EecCCCCcc----hHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEECCCHHHHHHHHHHHHH
Confidence 554 444566552 1112223333322321 1234566778777664422 23334555566666777777775
Q ss_pred CC-CeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 267 PH-FTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 267 ~g-~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
.. ...+...|+...|+.|.+-|.+ + ++-...++|+..+|+++|.+...+..
T Consensus 190 ~~~~~~~~~~~~~~AE~~Kl~~N~~-----------------~-av~Ia~~NE~a~lae~~GiD~~~v~~ 241 (425)
T PRK15182 190 IISAGTYKAESIKVAEAAKVIENTQ-----------------R-DLNIALVNELAIIFNRLNIDTEAVLR 241 (425)
T ss_pred HhhcCcEEecCHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 43 2356677888888888777742 1 23346789999999999999876643
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-12 Score=117.02 Aligned_cols=152 Identities=20% Similarity=0.258 Sum_probs=98.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||+|||.|.||+.||..|+++ | ++|++|+|+++..+++ ..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~-g-----~~v~~~d~~~~~~~~~--------------------------~~------ 42 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA-G-----YEVTVYDRSPEKAEAL--------------------------AE------ 42 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT-T-----TEEEEEESSHHHHHHH--------------------------HH------
T ss_pred CCEEEEEchHHHHHHHHHHHHhc-C-----CeEEeeccchhhhhhh--------------------------HH------
Confidence 58999999999999999999998 7 8999999998654431 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHHH--HHHhhhccCCCCEEEEeecc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEE--ISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~~--l~~~l~~~~~~~ivIs~~kG 199 (465)
.......++.++++.+|+||+++|. +.+++++.. +.+.+.+ ++++|.++ .
T Consensus 43 -----------------------~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~---g~iiid~s-T 95 (163)
T PF03446_consen 43 -----------------------AGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRP---GKIIIDMS-T 95 (163)
T ss_dssp -----------------------TTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-T---TEEEEE-S-S
T ss_pred -----------------------hhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhcccc---ceEEEecC-C
Confidence 0345678899999999999999997 689999998 8887776 67776555 3
Q ss_pred ccccccccccCCCHHHHHHhHh---CCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEE
Q 012349 200 VEAELEAVPRIITPTQMINRAT---GVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~l---g~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (465)
+.+++ ++.+.+.+ |.......+..||.-+. .|..+ ++++++++..++++.+|+.-+-+++
T Consensus 96 ~~p~~---------~~~~~~~~~~~g~~~vdapV~Gg~~~a~---~g~l~-~~~gG~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 96 ISPET---------SRELAERLAAKGVRYVDAPVSGGPPGAE---EGTLT-IMVGGDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp --HHH---------HHHHHHHHHHTTEEEEEEEEESHHHHHH---HTTEE-EEEES-HHHHHHHHHHHHHHEEEEE
T ss_pred cchhh---------hhhhhhhhhhccceeeeeeeeccccccc---ccceE-EEccCCHHHHHHHHHHHHHHhCCce
Confidence 44431 12333333 21111223444443332 45433 4567888888889999886665555
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.2e-11 Score=127.03 Aligned_cols=177 Identities=19% Similarity=0.219 Sum_probs=117.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.|||+|||+|.||+++|..|+++ | ++|++|+++++.++.+. +.++... ++..+++..
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~-G-----~~V~v~D~~~~~~~~~~-----~~~~~~~-------~~~~~l~~~----- 60 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA-G-----IDVAVFDPHPEAERIIG-----EVLANAE-------RAYAMLTDA----- 60 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHH-----HHHHHHH-------HHHhhhccc-----
Confidence 47999999999999999999999 8 89999999987665421 1111100 011112211
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+. ...++.+++++++++++||+||.++|++. .+.++.++.+++++ +++|.|.+.|+
T Consensus 61 --~~~----------------~~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~---~~iI~SsTsgi 119 (495)
T PRK07531 61 --PLP----------------PEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARP---DALIGSSTSGF 119 (495)
T ss_pred --hhh----------------hhhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 000 00136778899889999999999999885 66678888888776 67888999888
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEecC-Ch
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNG-DL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~-Di 277 (465)
... .+.+.+..+ ...++..|+.+.... ....++.+. +++..+.++.+|+..|-...+.. |+
T Consensus 120 ~~s------------~l~~~~~~~--~r~~~~hP~nP~~~~--~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~ 183 (495)
T PRK07531 120 LPS------------DLQEGMTHP--ERLFVAHPYNPVYLL--PLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEI 183 (495)
T ss_pred CHH------------HHHhhcCCc--ceEEEEecCCCcccC--ceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCC
Confidence 754 245555432 235667777655322 222222222 36778999999999887776654 44
Q ss_pred HH
Q 012349 278 VT 279 (465)
Q Consensus 278 ~g 279 (465)
-|
T Consensus 184 ~g 185 (495)
T PRK07531 184 DA 185 (495)
T ss_pred cc
Confidence 33
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.4e-11 Score=120.32 Aligned_cols=255 Identities=12% Similarity=0.090 Sum_probs=147.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||.|.||.++|..|.++ | ++|++|+|++. .++ ....
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~-G-----~~v~v~~~~~~-~~~---------~~~~----------------------- 41 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA-G-----HQLHVTTIGPV-ADE---------LLSL----------------------- 41 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEeCCHh-HHH---------HHHc-----------------------
Confidence 5899999999999999999998 7 89999998753 221 0000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHH---HHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~---l~~~l~~~~~~~ivIs~~kG 199 (465)
+.....++.++++.+|+||+|||.. .+++++.. +.+.+.+ ++++|.++ .
T Consensus 42 -----------------------g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~---g~ivvd~s-T 94 (292)
T PRK15059 42 -----------------------GAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLK---GKTIVDMS-S 94 (292)
T ss_pred -----------------------CCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCC---CCEEEECC-C
Confidence 1223456777788999999999976 66776632 3333343 56676665 4
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
+.+.+ .+.+.+.+.+ .|.......+..||.-+. .|..+ ++++++++..++++.+|+..+-++++..+. |
T Consensus 95 ~~p~~-----~~~~~~~~~~-~G~~~vdaPVsGg~~~a~---~g~l~-~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~-G 163 (292)
T PRK15059 95 ISPIE-----TKRFARQVNE-LGGDYLDAPVSGGEIGAR---EGTLS-IMVGGDEAVFERVKPLFELLGKNITLVGGN-G 163 (292)
T ss_pred CCHHH-----HHHHHHHHHH-cCCCEEEecCCCCHHHHh---cCcEE-EEEcCCHHHHHHHHHHHHHHcCCcEEeCCc-c
Confidence 44431 1122232322 232111111222222221 34433 345778888899999999877766666664 4
Q ss_pred H-HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcccCchhHHH---HH
Q 012349 280 H-EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWY---GQ 355 (465)
Q Consensus 280 v-e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~---G~ 355 (465)
. ...|.+-|.+. .....++.|...++++.|.+++++. |.+... ..+++.+ +.
T Consensus 164 ~g~~~Kl~~N~l~------------------~~~~~a~~Ea~~la~~~Gld~~~~~-----~~l~~~-~~~s~~~~~~~~ 219 (292)
T PRK15059 164 DGQTCKVANQIIV------------------ALNIEAVSEALLFASKAGADPVRVR-----QALMGG-FASSRILEVHGE 219 (292)
T ss_pred HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCHHHHH-----HHHHcC-cccCHHHHhhch
Confidence 3 22333334321 1123568899999999999988764 322221 1112211 11
Q ss_pred HHhcCCChhhHhHhhcCCccc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 356 ELAKGRLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 356 ~l~~g~~~~~~~~~~~~~~~v-EG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
.+.++. +...-.+ -..+..+.+.+++++.|+ + +|+...+.+++.
T Consensus 220 ~~~~~~--------~~~~f~l~~~~KDl~l~~~~a~~~g~--------------~-~p~~~~~~~~~~ 264 (292)
T PRK15059 220 RMIKRT--------FNPGFKIALHQKDLNLALQSAKALAL--------------N-LPNTATCQELFN 264 (292)
T ss_pred hhhcCC--------CCCCCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 221111 0000012 234556678899999994 6 799888877763
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-10 Score=124.04 Aligned_cols=219 Identities=15% Similarity=0.084 Sum_probs=139.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|++|..+|..||++ | .+++|+.++.++++++.+|. ++ .+.+-+++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~-g---~g~~V~gvD~~~~~v~~l~~---------g~--------~~~~e~gl----- 54 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK-C---PDIEVVVVDISVPRIDAWNS---------DQ--------LPIYEPGL----- 54 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-C---CCCeEEEEECCHHHHHHHHc---------CC--------CccCCCCH-----
Confidence 58999999999999999999987 5 12679999999998887443 22 11222222
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--cc-------------hHHHHHHHHHHhhhcc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--ST-------------ETKEVFEEISRYWKER 187 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp--s~-------------~l~~vl~~l~~~l~~~ 187 (465)
+|++.++. ..++.+|+|..+++.+||++|+||| .. ++.+++++|.+++++
T Consensus 55 ------~ell~~~~--------~~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~- 119 (473)
T PLN02353 55 ------DEVVKQCR--------GKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS- 119 (473)
T ss_pred ------HHHHHHhh--------cCCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC-
Confidence 13333211 0247899999888999999999985 32 688999999999876
Q ss_pred CCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhcc----CceEEEEeC-Ch----hHHH
Q 012349 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARICG-AE----KWRK 258 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g----~~t~~~~~~-~~----~~~~ 258 (465)
+++|| ...-+.+. +...+...+.+.. ....+.+.+.|.+..+...- .+..+++++ ++ +..+
T Consensus 120 --~~lVv-~~STvp~G-----tt~~~~~~l~~~~--~g~~f~v~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~ 189 (473)
T PLN02353 120 --DKIVV-EKSTVPVK-----TAEAIEKILTHNS--KGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQ 189 (473)
T ss_pred --CcEEE-EeCCCCCC-----hHHHHHHHHHhhC--CCCCeEEEECCCccCCCCcccccCCCCEEEEccCCchhhHHHHH
Confidence 55443 33234443 2222223333321 11346788999998865421 133445554 22 2467
Q ss_pred HHHHHHcCCC-CeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCc
Q 012349 259 PLAKFLRRPH-FTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEP 330 (465)
Q Consensus 259 ~l~~ll~~~g-~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~ 330 (465)
.++++++... -..+...++...|+.|.+-|.+ ++. -...++|+..+|+++|++.
T Consensus 190 ~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~-----------------ra~-~Iaf~NEla~lce~~giD~ 244 (473)
T PLN02353 190 ALKDVYAHWVPEERIITTNLWSAELSKLAANAF-----------------LAQ-RISSVNAMSALCEATGADV 244 (473)
T ss_pred HHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHH-----------------HHH-HHHHHHHHHHHHHHhCCCH
Confidence 7777876432 1345678999999998877742 211 1245678888888887743
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.8e-11 Score=117.60 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=119.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcc-cccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRC-AYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~-~~l~~~~~~l 121 (465)
++||+|||+|.||..+|..++.+ | ++|++|+++++.+++... .+++.- .+..+.. .......
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~-g-----~~V~~~d~~~~~~~~~~~-----~i~~~l---~~~~~~g~~~~~~~~--- 65 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA-G-----YDVVMVDISDAAVDRGLA-----TITKSL---DRLVKKGKMTEADKE--- 65 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC-C-----CceEEEeCCHHHHHHHHH-----HHHHHH---HHHHHcCCCCHHHHH---
Confidence 46899999999999999999998 7 899999999887653211 111110 0000000 0000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchH--HHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET--KEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l--~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
....++++++|.++ +++||+||+|+|.+.- .++++++.+++++ +++++|.+.|
T Consensus 66 ---------------------~~~~~l~~~~~~~~-~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~---~~il~s~ts~ 120 (282)
T PRK05808 66 ---------------------AALARITGTTDLDD-LKDADLVIEAATENMDLKKKIFAQLDEIAKP---EAILATNTSS 120 (282)
T ss_pred ---------------------HHHhCeEEeCCHHH-hccCCeeeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 00125677888764 7999999999997543 7999999999887 7888899988
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
+... .+.+.++.+ .+ .+...|+.+..+..+. .++. ..+++..+.+.++|+..|..+....|.
T Consensus 121 ~~~~------------~la~~~~~~-~r-~ig~h~~~P~~~~~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~ 184 (282)
T PRK05808 121 LSIT------------ELAAATKRP-DK-VIGMHFFNPVPVMKLV--EIIRGLATSDATHEAVEALAKKIGKTPVEVKNA 184 (282)
T ss_pred CCHH------------HHHHhhCCC-cc-eEEeeccCCcccCccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCc
Confidence 7664 355666543 23 4566777766555442 2222 236678899999999999887776776
Q ss_pred HHH
Q 012349 278 VTH 280 (465)
Q Consensus 278 ~gv 280 (465)
-|-
T Consensus 185 ~g~ 187 (282)
T PRK05808 185 PGF 187 (282)
T ss_pred cCh
Confidence 554
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-11 Score=118.96 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=124.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||.|.||..+|..|.++ | ++|++|+|+++.++.+ .+.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~-g-----~~v~v~dr~~~~~~~~---------~~~----------------------- 42 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED-G-----HEVVGYDVNQEAVDVA---------GKL----------------------- 42 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHH---------HHC-----------------------
Confidence 6899999999999999999998 7 8999999997654421 100
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~---aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
....+.+++++++. +|+||+++|.+ .++++++.+.+.+++ ++++|.++.+
T Consensus 43 -----------------------g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i~~~l~~---g~ivid~st~ 96 (299)
T PRK12490 43 -----------------------GITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDLYPLLSP---GDIVVDGGNS 96 (299)
T ss_pred -----------------------CCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHHhccCCC---CCEEEECCCC
Confidence 12344566676655 69999999988 999999998887765 6778877644
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCC---eEEecCC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF---TVWDNGD 276 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~---~v~~s~D 276 (465)
-... ...+.+.+.+ .|.......|..||.-+. .|. + ++++++++..++++.+|+.-+- ++++..+
T Consensus 97 ~~~~------~~~~~~~~~~-~g~~~vdapV~G~~~~a~---~g~-~-~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~ 164 (299)
T PRK12490 97 RYKD------DLRRAEELAE-RGIHYVDCGTSGGVWGLR---NGY-C-LMVGGDKEIYDRLEPVFKALAPEGPGYVHAGP 164 (299)
T ss_pred Cchh------HHHHHHHHHH-cCCeEEeCCCCCCHHHHh---cCC-e-EEecCCHHHHHHHHHHHHHhcCcCCcEEEECC
Confidence 3222 1112222222 121111112333332222 443 3 5678888888888888887665 5666666
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhC--CCcchhc
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLA--EEPEKLA 334 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G--~~~~t~~ 334 (465)
+-.-...|.+-|. .......++.|...++++.| .+++.+.
T Consensus 165 ~g~a~~~Kl~~n~------------------~~~~~~~~~aEa~~l~~~~g~~ld~~~~~ 206 (299)
T PRK12490 165 VGSGHFLKMVHNG------------------IEYGMMQAYAEGLELLDKSDFDFDVEDVA 206 (299)
T ss_pred cCHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcccCCCHHHHH
Confidence 4223333333332 11233467889999999988 6766553
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=116.03 Aligned_cols=183 Identities=21% Similarity=0.252 Sum_probs=111.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||+++|..|+.+ | ++|++|+++++.+++++.. +.+. +..+.+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~l~~~~~~-----~~~~---------~~~~~~~~----- 57 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH-G-----FDVTIYDISDEALEKAKER-----IAKL---------ADRYVRDL----- 57 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHHH-----HHHH---------HHHHHHcC-----
Confidence 47999999999999999999998 7 8999999998876654321 1100 01111110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+..++-.. ..+.++..++|++++++++|+||+|+|++ ..+++++++.+++++ ++++++.+.++
T Consensus 58 --~~~~~~~~~---------~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~---~~ii~sntSt~ 123 (287)
T PRK08293 58 --EATKEAPAE---------AALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPE---KTIFATNSSTL 123 (287)
T ss_pred --CCChhhhHH---------HHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CCEEEECcccC
Confidence 000000000 00125778899998899999999999976 688899999998876 67666655444
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHcCCCCeEEe-cCCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWD-NGDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v~~-s~Di 277 (465)
. +++ +.+.+..+ .++.. .-| ...........++. ..+++..+.+.++++..|..... ..|.
T Consensus 124 ~-----------~~~-~~~~~~~~-~r~vg-~Hf--~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~ 187 (287)
T PRK08293 124 L-----------PSQ-FAEATGRP-EKFLA-LHF--ANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQ 187 (287)
T ss_pred C-----------HHH-HHhhcCCc-ccEEE-EcC--CCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 3 334 33444432 23221 112 11122222223332 23567788999999998877544 4566
Q ss_pred HHH
Q 012349 278 VTH 280 (465)
Q Consensus 278 ~gv 280 (465)
-|-
T Consensus 188 pgf 190 (287)
T PRK08293 188 PGY 190 (287)
T ss_pred CCH
Confidence 554
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-10 Score=114.38 Aligned_cols=200 Identities=19% Similarity=0.217 Sum_probs=133.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
++|+|||.|+||.++|..|... | ++|.++.++...... . ...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~s-G-----~~Vvv~~r~~~~s~~---------~----------------A~~------- 59 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDS-G-----VDVVVGLREGSKSWK---------K----------------AEA------- 59 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEECCchhhHH---------H----------------HHH-------
Confidence 6899999999999999999988 7 889888776432111 0 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHH-HHHHHhhhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
..+.. .+.+++++.||+|+++||.+...+++ +++.+.+++ ++++ +++.|+..
T Consensus 60 ----------------------~G~~~-~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~---g~iL-~~a~G~~i 112 (330)
T PRK05479 60 ----------------------DGFEV-LTVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKE---GAAL-AFAHGFNI 112 (330)
T ss_pred ----------------------CCCee-CCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCC---CCEE-EECCCCCh
Confidence 01223 36778899999999999999889998 779988876 5655 88889876
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhh-------hhccCceEEEEeCC--hhHHHHHHHHHcCCC-----
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-------IYNKEYANARICGA--EKWRKPLAKFLRRPH----- 268 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~e-------v~~g~~t~~~~~~~--~~~~~~l~~ll~~~g----- 268 (465)
. ..+...+. ..+ +++.+|+.+.. ++.|.++.+.+..+ .+..+.+..+|+..|
T Consensus 113 ~------------~~~~~p~~-~~~-Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g 178 (330)
T PRK05479 113 H------------FGQIVPPA-DVD-VIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAG 178 (330)
T ss_pred h------------hceeccCC-CCc-EEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccc
Confidence 5 22333332 122 56778999888 77777665534333 455566666666544
Q ss_pred -----CeEEecCChHHH--HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHh
Q 012349 269 -----FTVWDNGDLVTH--EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLL 326 (465)
Q Consensus 269 -----~~v~~s~Di~gv--e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~ 326 (465)
|+-...+|+.|- -+||.+--.+..+...+...+|. +. .+ .-.++.|+..+...+
T Consensus 179 ~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~-pe--~A-y~e~~~e~k~i~dl~ 239 (330)
T PRK05479 179 VIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQ-PE--MA-YFECLHELKLIVDLI 239 (330)
T ss_pred eeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCC-HH--HH-HHHHHHHHHHHHHHH
Confidence 333445778774 34776666677776666666663 32 13 336788887766554
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=119.19 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=111.8
Q ss_pred ceEEEECccH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhh
Q 012349 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (465)
Q Consensus 44 mkIaIIGaGa--------------------mGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~ 103 (465)
|||+|.|+|+ =|+++|..|+++ | |+|++|+|+++..+. ++ .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a-G-----~~V~v~Dr~~~~l~~---~~----~~----- 62 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA-G-----HDVVLAEPNRSILSE---EL----WK----- 62 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC-C-----CeEEEEECCHHHhhH---HH----HH-----
Confidence 6888888886 388899999998 7 999999998764321 00 00
Q ss_pred HHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-HHHHHHHHHH
Q 012349 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISR 182 (465)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-l~~vl~~l~~ 182 (465)
.+.. .++.+++|..++++++|+||+++|+.. ++++++.+.+
T Consensus 63 ---------~l~~-----------------------------~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~ 104 (342)
T PRK12557 63 ---------KVED-----------------------------AGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNILP 104 (342)
T ss_pred ---------HHHH-----------------------------CCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHh
Confidence 0100 135566788888899999999999988 9999999999
Q ss_pred hhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCC--------CccEEEEeCCchhhhhhccCceEEEEeCCh
Q 012349 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--------IENILYLGGPNIASEIYNKEYANARICGAE 254 (465)
Q Consensus 183 ~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~--------~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~ 254 (465)
.+++ +++|++++++- +. ..++.+.+.++.+ .++..+..+|++...+..+.++......++
T Consensus 105 ~L~~---g~IVId~ST~~-~~--------~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~ 172 (342)
T PRK12557 105 HLPE---NAVICNTCTVS-PV--------VLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELATE 172 (342)
T ss_pred hCCC---CCEEEEecCCC-HH--------HHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCCCH
Confidence 8876 67888777553 22 1224454444311 123334455666665555444323334567
Q ss_pred hHHHHHHHHHcCCCCeEEecC
Q 012349 255 KWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 255 ~~~~~l~~ll~~~g~~v~~s~ 275 (465)
+..++++.+|+..|.++++.+
T Consensus 173 e~~e~v~~LL~a~G~~v~~~~ 193 (342)
T PRK12557 173 EQIEKCVELAESIGKEPYVVP 193 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEeC
Confidence 778999999999999887766
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=128.61 Aligned_cols=158 Identities=13% Similarity=0.083 Sum_probs=106.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+++|+|||.|.||++||..|+++ | ++|++|+|+++.++.++. ... + ++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~-G-----~~V~v~dr~~~~~~~l~~--------~~~--------~----~g------ 48 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR-G-----FKISVYNRTYEKTEEFVK--------KAK--------E----GN------ 48 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH--------hhh--------h----cC------
Confidence 36899999999999999999999 8 999999999987664211 100 0 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEec-CcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGL-PSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~---~aDiVIlaV-ps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
..+..++++++++. ++|+||+++ |++.++++++++.+++.+ +.+||.++|
T Consensus 49 -----------------------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~---g~iIID~gn 102 (470)
T PTZ00142 49 -----------------------TRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEK---GDIIIDGGN 102 (470)
T ss_pred -----------------------CcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCC---CCEEEECCC
Confidence 02345677888775 489888886 467899999999999887 789999999
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCe
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~ 270 (465)
+....+ ..+..+ +.+ .|.......|..||.-|. .| + .++++++++..++++.+|+..+-+
T Consensus 103 ~~~~dt-----~~r~~~-l~~-~Gi~fldapVSGG~~gA~---~G-~-~lm~GG~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 103 EWYLNT-----ERRIKR-CEE-KGILYLGMGVSGGEEGAR---YG-P-SLMPGGNKEAYDHVKDILEKCSAK 162 (470)
T ss_pred CCHHHH-----HHHHHH-HHH-cCCeEEcCCCCCCHHHHh---cC-C-EEEEeCCHHHHHHHHHHHHHHhhh
Confidence 986652 122212 221 122111123444444443 34 3 467888888888898888875544
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=111.61 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=83.3
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCCc
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT 125 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~ 125 (465)
|+|+|+|++|+.+|..|++. | ++|++++|++ .++.++.+++ .+.... ++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g-----~~V~l~~r~~-~~~~~~~~g~-------------------~~~~~~---~~~~ 51 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-G-----HDVTLVSRSP-RLEAIKEQGL-------------------TITGPD---GDET 51 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-T-----CEEEEEESHH-HHHHHHHHCE-------------------EEEETT---EEEE
T ss_pred CEEECcCHHHHHHHHHHHHC-C-----CceEEEEccc-cHHhhhheeE-------------------EEEecc---ccee
Confidence 78999999999999999998 7 9999999998 6665333221 111100 0000
Q ss_pred ccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccccc
Q 012349 126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205 (465)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~ 205 (465)
+ .......+..+...++|+||+|||+.+++++++.+++++.+ ++.|++++||+...
T Consensus 52 ~-------------------~~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~~~~---~t~iv~~qNG~g~~-- 107 (151)
T PF02558_consen 52 V-------------------QPPIVISAPSADAGPYDLVIVAVKAYQLEQALQSLKPYLDP---NTTIVSLQNGMGNE-- 107 (151)
T ss_dssp E-------------------EEEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTGEET---TEEEEEESSSSSHH--
T ss_pred c-------------------ccccccCcchhccCCCcEEEEEecccchHHHHHHHhhccCC---CcEEEEEeCCCCcH--
Confidence 0 01122333323467899999999999999999999999987 67999999999876
Q ss_pred ccccCCCHHHHHHhHhCC
Q 012349 206 AVPRIITPTQMINRATGV 223 (465)
Q Consensus 206 ~~~~~~~~se~I~e~lg~ 223 (465)
+.+.+.++.
T Consensus 108 ---------~~l~~~~~~ 116 (151)
T PF02558_consen 108 ---------EVLAEYFPR 116 (151)
T ss_dssp ---------HHHHCHSTG
T ss_pred ---------HHHHHHcCC
Confidence 678877753
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-10 Score=113.26 Aligned_cols=209 Identities=16% Similarity=0.135 Sum_probs=128.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|.||+++|..|+++ | ++|++|+++++.++.+... ++... .+.. +..+++...
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~-G-----~~V~v~d~~~~~~~~~~~~-----~~~~l---~~l~-~~g~~~~~~---- 62 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA-G-----HEVRLWDADPAAAAAAPAY-----IAGRL---EDLA-AFDLLDGEA---- 62 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC-C-----CeeEEEeCCHHHHHHHHHH-----HHHHH---HHHH-HcCCCchhh----
Confidence 36899999999999999999999 8 8999999998766643211 11000 0000 000111000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +..+.++.+++|+.++++++|+||+|+|+. ....++.++.++.++ +.++.|.++++
T Consensus 63 ---~---------------~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~---~~ii~ssts~~ 121 (308)
T PRK06129 63 ---P---------------DAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPP---HAILASSTSAL 121 (308)
T ss_pred ---H---------------HHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCC---cceEEEeCCCC
Confidence 0 000124678899988899999999999986 577788888877665 56776777665
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHcCCCCeEEec-CCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDN-GDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v~~s-~Di 277 (465)
... .+.+.+..+. ..+...|-.+.... ....++. .++++..+.++.+|+..|.++... .|.
T Consensus 122 ~~~------------~la~~~~~~~--~~~~~hp~~p~~~~--~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~ 185 (308)
T PRK06129 122 LAS------------AFTEHLAGRE--RCLVAHPINPPYLI--PVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREI 185 (308)
T ss_pred CHH------------HHHHhcCCcc--cEEEEecCCCcccC--ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 432 3555554321 12333333321111 1122222 256778899999999999876655 465
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 278 VTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 278 ~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
-|. +-| + ++...++|+..+++..|.+++.+
T Consensus 186 ~G~-----i~n-----------------r----l~~a~~~EA~~l~~~g~~~~~~i 215 (308)
T PRK06129 186 DGF-----VLN-----------------R----LQGALLREAFRLVADGVASVDDI 215 (308)
T ss_pred ccH-----HHH-----------------H----HHHHHHHHHHHHHHcCCCCHHHH
Confidence 543 112 1 22356778888888877777655
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-11 Score=111.36 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=97.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||.|.+|..+|..||++ | |+|+.++.+++.++. ++++. .+.+.+++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G-----~~V~g~D~~~~~v~~---------l~~g~--------~p~~E~~l~----- 52 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-G-----HQVIGVDIDEEKVEA---------LNNGE--------LPIYEPGLD----- 52 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-T-----SEEEEE-S-HHHHHH---------HHTTS--------SSS-CTTHH-----
T ss_pred CEEEEECCCcchHHHHHHHHhC-C-----CEEEEEeCChHHHHH---------Hhhcc--------ccccccchh-----
Confidence 8999999999999999999999 8 999999999987776 34332 233333331
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCCCEE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~~iv 193 (465)
|++.+.... .++.+++|.++++.++|++|+|||.. ++.++++.|.+++.+ +++
T Consensus 53 ------~ll~~~~~~-------~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~---~~l- 115 (185)
T PF03721_consen 53 ------ELLKENVSA-------GRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP---GDL- 115 (185)
T ss_dssp ------HHHHHHHHT-------TSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS---CEE-
T ss_pred ------hhhcccccc-------ccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh---cce-
Confidence 334332111 26889999999999999999999853 588999999999886 444
Q ss_pred EEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc----cCceEEEEeCChhHHH-HHHHH
Q 012349 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRK-PLAKF 263 (465)
Q Consensus 194 Is~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~~~~~~-~l~~l 263 (465)
|.+-.-+.+.+ +-.....++++.-+.. ..+.+.+.|.+..+... ..+..++.+.+++..+ .++++
T Consensus 116 vV~~STvppGt----t~~~~~~ile~~~~~~-~~f~la~~PErl~~G~a~~d~~~~~rvV~G~~~~~~~~~~~~l 185 (185)
T PF03721_consen 116 VVIESTVPPGT----TEELLKPILEKRSGKK-EDFHLAYSPERLREGRAIEDFRNPPRVVGGCDDESAEERLKEL 185 (185)
T ss_dssp EEESSSSSTTH----HHHHHHHHHHHHCCTT-TCEEEEE------TTSHHHHHHSSSEEEEEESSHHHHHHHHHH
T ss_pred EEEccEEEEee----ehHhhhhhhhhhcccc-cCCeEEECCCccCCCCcchhccCCCEEEEeCCcHHHHHHHhcC
Confidence 44544566552 1112333444433321 34678888988775432 1244455665554443 55543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-10 Score=113.62 Aligned_cols=178 Identities=15% Similarity=0.186 Sum_probs=111.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||+++|..|+.+ | ++|++|+++++.++++.. .+.+.. .++... ..++...
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~-----~i~~~~---~~~~~~-g~~~~~~---- 64 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-G-----YDVLLNDVSADRLEAGLA-----TINGNL---ARQVAK-GKISEEA---- 64 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHHH-----HHHHHH---HHHHHc-CCCCHHH----
Confidence 47899999999999999999999 7 899999999887664211 111100 000000 0011000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. . ..+.+++++++++ ++.++|+||+|||++ ..+.+++++.+++++ +++++|.+.++
T Consensus 65 ---~------~---------~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~---~~ii~s~ts~~ 122 (292)
T PRK07530 65 ---R------A---------AALARISTATDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKP---EAILATNTSSI 122 (292)
T ss_pred ---H------H---------HHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 0 0 0012467778885 478999999999985 577888999998887 68888888777
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccE-EE-EeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENI-LY-LGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i-~v-lsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
... + +.+.+..+ .++ .+ ..-|.... .+ ..++. ..+++..+.+..+|+..|..+.+..|
T Consensus 123 ~~s-----------~-la~~~~~~-~r~~g~h~~~p~~~~---~~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d 184 (292)
T PRK07530 123 SIT-----------R-LASATDRP-ERFIGIHFMNPVPVM---KL--VELIRGIATDEATFEAAKEFVTKLGKTITVAED 184 (292)
T ss_pred CHH-----------H-HHhhcCCc-ccEEEeeccCCcccC---ce--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 543 2 44444322 121 11 11122211 11 12222 34678889999999999988877777
Q ss_pred hHH
Q 012349 277 LVT 279 (465)
Q Consensus 277 i~g 279 (465)
.-|
T Consensus 185 ~pg 187 (292)
T PRK07530 185 FPA 187 (292)
T ss_pred cCC
Confidence 653
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-10 Score=112.39 Aligned_cols=180 Identities=18% Similarity=0.152 Sum_probs=112.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||+|.||..+|..|+++ | ++|++|+++++.+++++.. +........ +. ..+....
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~~-~~~~~~~~~-------~~-g~~~~~~----- 61 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-G-----FQTTLVDIKQEQLESAQQE-IASIFEQGV-------AR-GKLTEAA----- 61 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHHHHH-HHHHHHHHH-------Hc-CCCCHHH-----
Confidence 5899999999999999999998 7 8999999999877764332 111111110 00 0000000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
. +..+.+++.++++++++++||+||+|+|.+. ...++.++.+++++ ++++++.+.++.
T Consensus 62 --~---------------~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~---~~il~~~tSt~~ 121 (288)
T PRK09260 62 --R---------------QAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPA---ECYIATNTSTMS 121 (288)
T ss_pred --H---------------HHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCC---CcEEEEcCCCCC
Confidence 0 0001246778899888999999999999875 56778888888776 666666665665
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEE-EEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENIL-YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~-vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
+. + +.+....+..-+. ....|. ..+....++.+ .+++..++++.+|...+..+....|.-
T Consensus 122 ~~-----------~-l~~~~~~~~r~~g~h~~~Pv-----~~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~ 184 (288)
T PRK09260 122 PT-----------E-IASFTKRPERVIAMHFFNPV-----HKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFP 184 (288)
T ss_pred HH-----------H-HHhhcCCcccEEEEecCCCc-----ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcc
Confidence 53 2 4444432211111 111232 22233332222 267788999999999998877777865
Q ss_pred HH
Q 012349 279 TH 280 (465)
Q Consensus 279 gv 280 (465)
|-
T Consensus 185 Gf 186 (288)
T PRK09260 185 GF 186 (288)
T ss_pred cH
Confidence 54
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-10 Score=114.26 Aligned_cols=163 Identities=18% Similarity=0.170 Sum_probs=113.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~-~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+||+|||+|+||.++|..|.++ | ++|+++.++.. ..+. ...
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~s-G-----~~Viv~~~~~~~~~~~--------------------------a~~------ 45 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDS-G-----LNVIVGLRKGGASWKK--------------------------ATE------ 45 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-C-----CeEEEEECcChhhHHH--------------------------HHH------
Confidence 6899999999999999999988 7 77877665532 1111 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
..+.++ +..+++++||+|+++||++ +...+++++.+.+++ + .+||++.|+.
T Consensus 46 -----------------------~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~ei~~~l~~---g-~iVs~aaG~~ 97 (314)
T TIGR00465 46 -----------------------DGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKE---G-KTLGFSHGFN 97 (314)
T ss_pred -----------------------CCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHHHHHhhCCC---C-cEEEEeCCcc
Confidence 023333 4677889999999999999 777778889888875 4 4899999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhh-h------hccCceEEEEeC--ChhHHHHHHHHHcCCCCe--
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE-I------YNKEYANARICG--AEKWRKPLAKFLRRPHFT-- 270 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~e-v------~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~-- 270 (465)
.. .++..++.. . -+++.+||.+.. + +.|.++.+.+.. +.+..+.+..+|+..|..
T Consensus 98 i~------------~~~~~~~~~-~-~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~~~ 163 (314)
T TIGR00465 98 IH------------FVQIVPPKD-V-DVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGGRA 163 (314)
T ss_pred Hh------------hccccCCCC-C-cEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 75 344555421 2 368999999998 4 788766543432 445667788888877755
Q ss_pred -----E---EecCChHHHH--HHHHH
Q 012349 271 -----V---WDNGDLVTHE--VMGGL 286 (465)
Q Consensus 271 -----v---~~s~Di~gve--~~gal 286 (465)
. ++.+|..+.. +||..
T Consensus 164 ~~~~t~f~~e~~edl~~~~t~l~Gs~ 189 (314)
T TIGR00465 164 GVLETTFKEETESDLFGEQAVLCGGL 189 (314)
T ss_pred ceeechhHhhhhHHhcCcchhHHhHH
Confidence 3 6667776643 45443
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-09 Score=109.87 Aligned_cols=181 Identities=17% Similarity=0.185 Sum_probs=112.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||.+||..|+.+ | ++|++|+++++.+++... .+...+.+. .+....-....
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~~~~-~~~~~~~~~-------~~~g~~~~~~~---- 65 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA-G-----MDVWLLDSDPAALSRGLD-SISSSLARL-------VKKGKMSQEEA---- 65 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHH-------HHcCCCCHHHH----
Confidence 46899999999999999999998 7 899999999876653211 111111100 00000000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--cchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--STETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp--s~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. ..+..+.++++.+ ++++||+||+|+| .+....++.++.+++++ +++++|.+.|+
T Consensus 66 ----------~---------~~~~~~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~---~~il~s~tS~i 122 (295)
T PLN02545 66 ----------D---------ATLGRIRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKP---SAILASNTSSI 122 (295)
T ss_pred ----------H---------HHHhceEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 0 0001355666764 5799999999999 67788889999988876 67888888888
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
... .+++.++.+ .++.. ..|..+... +....++.+ .+++..+.++.+|+..|..+.+..|.-
T Consensus 123 ~~~------------~l~~~~~~~-~r~~g-~h~~~pp~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~ 186 (295)
T PLN02545 123 SIT------------RLASATQRP-QQVIG-MHFMNPPPI--MKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYP 186 (295)
T ss_pred CHH------------HHHhhcCCC-cceEE-EeccCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcc
Confidence 654 255555432 22211 122222222 222323222 366778999999999998888877765
Q ss_pred HH
Q 012349 279 TH 280 (465)
Q Consensus 279 gv 280 (465)
|-
T Consensus 187 g~ 188 (295)
T PLN02545 187 GF 188 (295)
T ss_pred cH
Confidence 53
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=107.63 Aligned_cols=173 Identities=21% Similarity=0.318 Sum_probs=104.6
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
||+|||+|.||..+|..++.+ | ++|++|+++++.+++... .+...+.... +. ..+.... ..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l~~~~-------~~-~~~~~~~---~~- 61 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-G-----YEVTLYDRSPEALERARK-RIERLLDRLV-------RK-GRLSQEE---AD- 61 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-T-----SEEEEE-SSHHHHHHHHH-HHHHHHHHHH-------HT-TTTTHHH---HH-
T ss_pred CEEEEcCCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHhhhh-HHHHHHhhhh-------hh-ccchhhh---hh-
Confidence 799999999999999999999 8 999999999987765322 1111111110 00 0111000 00
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
..+.++..++|++++. +||+||.|+|.. ..++++.+|..++++ ++++.|.+.++..
T Consensus 62 ------------------~~~~~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~---~~ilasnTSsl~i 119 (180)
T PF02737_consen 62 ------------------AALARISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPP---DTILASNTSSLSI 119 (180)
T ss_dssp ------------------HHHHTEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-T---TSEEEE--SSS-H
T ss_pred ------------------hhhhhcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCC---CceEEecCCCCCH
Confidence 0012688999999876 999999999976 688899999999987 7999888888766
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
. + +.+.++.| .++..+ ..|-+.. ....++.+ .+++..+.+.+++...|.......|
T Consensus 120 ~-----------~-la~~~~~p-~R~ig~Hf~~P~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D 179 (180)
T PF02737_consen 120 S-----------E-LAAALSRP-ERFIGMHFFNPPHLM-----PLVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKD 179 (180)
T ss_dssp H-----------H-HHTTSSTG-GGEEEEEE-SSTTT-------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES
T ss_pred H-----------H-HHhccCcC-ceEEEEecccccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4 3 45555543 343222 2333221 12233333 2567788999999988887766555
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-10 Score=118.66 Aligned_cols=208 Identities=17% Similarity=0.086 Sum_probs=130.6
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
....+++|+|||.|.||+.||..|+++ | ++|++|+|+++.++.+. +... ..+.
T Consensus 2 ~~~~~~~IG~IGLG~MG~~mA~nL~~~-G-----~~V~V~NRt~~k~~~l~--------~~~~------------~~Ga- 54 (493)
T PLN02350 2 ASAALSRIGLAGLAVMGQNLALNIAEK-G-----FPISVYNRTTSKVDETV--------ERAK------------KEGN- 54 (493)
T ss_pred CCCCCCCEEEEeeHHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHHH--------Hhhh------------hcCC-
Confidence 456778999999999999999999999 8 99999999987665421 1000 0000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEE
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVII 194 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~---aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivI 194 (465)
..+....+++++++. +|+||++||.. .++++++.+.+.+.+ +.++|
T Consensus 55 ---------------------------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~---G~iiI 104 (493)
T PLN02350 55 ---------------------------LPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEP---GDCII 104 (493)
T ss_pred ---------------------------cccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCC---CCEEE
Confidence 012344667777665 99999999965 788888888888876 67888
Q ss_pred EeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCC-----
Q 012349 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHF----- 269 (465)
Q Consensus 195 s~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~----- 269 (465)
.+++.-...+ ....+.+++ -|.......|..||.-|. .| + .++++++++..++++.+|+..+-
T Consensus 105 D~sT~~~~~t------~~~~~~l~~-~Gi~fldapVSGG~~gA~---~G-~-~im~GG~~~a~~~v~pvL~~ia~k~~~~ 172 (493)
T PLN02350 105 DGGNEWYENT------ERRIKEAAE-KGLLYLGMGVSGGEEGAR---NG-P-SLMPGGSFEAYKNIEDILEKVAAQVDDG 172 (493)
T ss_pred ECCCCCHHHH------HHHHHHHHH-cCCeEEeCCCcCCHHHhc---CC-C-eEEecCCHHHHHHHHHHHHHHhhhcCCC
Confidence 8876543331 112222222 232111123444554333 34 3 46788888888999999886553
Q ss_pred -eEEecCChHHH-HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHH-hCCCcchhc
Q 012349 270 -TVWDNGDLVTH-EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLA 334 (465)
Q Consensus 270 -~v~~s~Di~gv-e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a-~G~~~~t~~ 334 (465)
.+.+..+. |. ...+.+-|. +. ..+..++.|...+++. +|.+++.+.
T Consensus 173 ~~v~~vG~~-GaG~~vKlv~N~----------i~--------~~~m~~iaEA~~l~~~~~Gld~~~l~ 221 (493)
T PLN02350 173 PCVTYIGPG-GAGNFVKMVHNG----------IE--------YGDMQLISEAYDVLKSVGGLSNEELA 221 (493)
T ss_pred CcEEEeCCc-CHHHHHHHHHHH----------HH--------HHHHHHHHHHHHHHHhhCCCCHHHHH
Confidence 24444443 32 222322231 11 2345778899999887 588877653
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-09 Score=107.22 Aligned_cols=148 Identities=18% Similarity=0.112 Sum_probs=106.5
Q ss_pred eEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 148 i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.++++..+++.++|+||+|||++.++++++++.+.+.+ +++|||+++|+..+ .+++.++.. .
T Consensus 31 ~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~---~~~ivS~~agi~~~------------~l~~~~~~~--~ 93 (245)
T TIGR00112 31 IVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGK---DKLLISIAAGVTLE------------KLSQLLGGT--R 93 (245)
T ss_pred cEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccC---CCEEEEecCCCCHH------------HHHHHcCCC--C
Confidence 345567777788999999999999999999999987654 57999999999875 467778632 2
Q ss_pred EEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCc
Q 012349 228 ILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESA 305 (465)
Q Consensus 228 i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~ 305 (465)
..++.+||.+..+.+|.. .+..+ .+++..+.++++|+..|..+++.++....-. ..+| .| +
T Consensus 94 ~ivR~mPn~~~~~~~g~t-~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~t---------alsg------sg-P 156 (245)
T TIGR00112 94 RVVRVMPNTPAKVGAGVT-AIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVT---------ALSG------SG-P 156 (245)
T ss_pred eEEEECCChHHHHhCCeE-EEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHH---------hhcc------Cc-H
Confidence 368999999999988753 23333 2456778999999999988888876543211 1111 22 2
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 306 TSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 306 n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
+++...+..+..-+...|.+++..
T Consensus 157 ----A~~~~~~~al~~~~v~~Gl~~~~A 180 (245)
T TIGR00112 157 ----AYVFLFIEALADAGVKQGLPRELA 180 (245)
T ss_pred ----HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 455556666667777788776543
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-10 Score=131.66 Aligned_cols=206 Identities=14% Similarity=0.078 Sum_probs=130.5
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 38 ~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
|....+++|+|||.|+||.+||..|+++ | ++|.+|+|+++.++.+ ...
T Consensus 319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l---------~~~----------------- 366 (1378)
T PLN02858 319 MQAKPVKRIGFIGLGAMGFGMASHLLKS-N-----FSVCGYDVYKPTLVRF---------ENA----------------- 366 (1378)
T ss_pred ccccCCCeEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHH---------HHc-----------------
Confidence 3334568999999999999999999998 7 8999999988654421 000
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHH---HHHHhhhccCCCCEE
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE---EISRYWKERITVPVI 193 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~---~l~~~l~~~~~~~iv 193 (465)
......++.++++++|+||+||| ++.+++++. .+.+.+.+ ++++
T Consensus 367 -----------------------------Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~---g~iv 414 (1378)
T PLN02858 367 -----------------------------GGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPA---GASI 414 (1378)
T ss_pred -----------------------------CCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCC---CCEE
Confidence 11234677788899999999999 778888873 34444444 5667
Q ss_pred EEeeccccccccccccCCCHHHHHHhH-hCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEE
Q 012349 194 ISLAKGVEAELEAVPRIITPTQMINRA-TGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (465)
Q Consensus 194 Is~~kGi~~~~~~~~~~~~~se~I~e~-lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (465)
|.++ .+.+++ ...+.+.+.+. .|.......+..||.-+. .|..+ ++++++++..++++.+|+..+-+++
T Consensus 415 Vd~S-TvsP~~-----~~~la~~l~~~g~g~~~lDAPVsGg~~~A~---~G~L~-imvgG~~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 415 VLSS-TVSPGF-----VIQLERRLENEGRDIKLVDAPVSGGVKRAA---MGTLT-IMASGTDEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred EECC-CCCHHH-----HHHHHHHHHhhCCCcEEEEccCCCChhhhh---cCCce-EEEECCHHHHHHHHHHHHHHhCcEE
Confidence 6555 344431 11222223221 111101112344444333 45443 4567777888889999988776766
Q ss_pred e-cCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 273 D-NGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 273 ~-s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
+ ..++-.-...|++-|.+. .....++.|+..++++.|.+++++..
T Consensus 485 ~~~g~~G~a~~~KL~nN~l~------------------~~~~aa~aEal~la~k~Gld~~~l~e 530 (1378)
T PLN02858 485 VIKGGCGAGSGVKMVNQLLA------------------GVHIASAAEAMAFGARLGLNTRKLFD 530 (1378)
T ss_pred EeCCCCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 5 566543444555555321 22245678999999999999887653
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-09 Score=112.78 Aligned_cols=211 Identities=20% Similarity=0.288 Sum_probs=126.5
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+||| +|.||+++|..|.++ | ++|++|+|+++...+. ..+ +
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~-G-----~~V~v~~r~~~~~~~~--------a~~--------------~-------- 44 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK-G-----FEVIVTGRDPKKGKEV--------AKE--------------L-------- 44 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC-C-----CEEEEEECChHHHHHH--------HHH--------------c--------
Confidence 6899998 799999999999988 7 8999999987543210 000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
++.++++..+++.++|+||+|||.+.+.++++++.+++++ +++++.++. +-.
T Consensus 45 ------------------------gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~---~~iViDvsS-vK~ 96 (437)
T PRK08655 45 ------------------------GVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAPHVKE---GSLLMDVTS-VKE 96 (437)
T ss_pred ------------------------CCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCC---CCEEEEccc-ccH
Confidence 2334567777889999999999999999999999998876 678877763 111
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEE---EEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENIL---YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~---vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
.+.+.+.+.++.. ..+. -+.||+.+. ..+....++.. .+++..+.++++|+..|.+++..+.-
T Consensus 97 ---------~~~~~l~~~~~~~-~~~V~~HPmaGp~~~~--~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e 164 (437)
T PRK08655 97 ---------RPVEAMEEYAPEG-VEILPTHPMFGPRTPS--LKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPE 164 (437)
T ss_pred ---------HHHHHHHHhcCCC-CEEEEcCCCCCCCCcc--cCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHH
Confidence 1224555555421 1111 123565542 34443333322 24567899999999999998865433
Q ss_pred HHHH---HHHHHHHHHHHHHHhhh-cccCCCcchHHHHHHHHHHHHHHH-HHHhCCCcc
Q 012349 278 VTHE---VMGGLKNVYAIGAGMVA-ALTNESATSKSVYFAHCTSEMVFI-THLLAEEPE 331 (465)
Q Consensus 278 ~gve---~~galKNviAia~Gi~~-gl~~g~~n~~a~li~~~~~E~~~l-~~a~G~~~~ 331 (465)
.-.. +...+-.+++.+.+... .++....... .+..-+++.+..+ ++..+.+|+
T Consensus 165 ~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~-~~a~~~frd~~~~~tRIa~~~p~ 222 (437)
T PRK08655 165 EHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESR-KFASPIYELMIDIIGRILGQNPY 222 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-hhcChhhHHHHHHHHHHhcCCHH
Confidence 2211 22223333333333221 1222111111 3555666666543 455555553
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=108.79 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=100.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||+++|..|.++ |. ..+|+.|+|+++.++.. ... +
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~-g~---~~~v~~~d~~~~~~~~~---------~~~---------------g------- 45 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK-GL---ISKVYGYDHNELHLKKA---------LEL---------------G------- 45 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc-CC---CCEEEEEcCCHHHHHHH---------HHC---------------C-------
Confidence 6899999999999999999988 72 13688888887644321 000 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
-+....+.+++. ++|+||+|||++.+.++++++.+ +++ +++|+.+ |....
T Consensus 46 -----------------------~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~~-l~~---~~iv~d~--gs~k~ 95 (275)
T PRK08507 46 -----------------------LVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLLD-IKE---NTTIIDL--GSTKA 95 (275)
T ss_pred -----------------------CCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHhc-cCC---CCEEEEC--ccchH
Confidence 011123455544 59999999999999999999988 776 6767653 22211
Q ss_pred ccccccCCCHHHHHHhHhCCC---CccEE--EEeCCchhh-hhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecC
Q 012349 204 LEAVPRIITPTQMINRATGVP---IENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~---~~~i~--vlsGP~~a~-ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
.+.+.+.+..+.. .+|.+ ..+||..+. ....|....++.. .+++..+.++.+|+..|.++...+
T Consensus 96 --------~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~ 167 (275)
T PRK08507 96 --------KIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD 167 (275)
T ss_pred --------HHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 1223333321110 01110 112343332 2335554433322 245677899999999998887766
Q ss_pred ChHHHHHHHH
Q 012349 276 DLVTHEVMGG 285 (465)
Q Consensus 276 Di~gve~~ga 285 (465)
.-.--+..+.
T Consensus 168 ~~~hD~~~a~ 177 (275)
T PRK08507 168 AKEHDLHAAY 177 (275)
T ss_pred HHHHHHHHHH
Confidence 5433333333
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=129.01 Aligned_cols=290 Identities=12% Similarity=0.080 Sum_probs=169.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||++||.|.||..||..|.++ | ++|++|+|+++.++++ ..
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l--------------------------~~------ 45 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRS-G-----FKVQAFEISTPLMEKF--------------------------CE------ 45 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHH--------------------------HH------
Confidence 46899999999999999999998 8 9999999998755431 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH---HHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl---~~l~~~l~~~~~~~ivIs~~k 198 (465)
.+....+++.+++++||+||+++|. ..+++++ +.+.+.+.+ ++++|-++
T Consensus 46 -----------------------~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~---g~iivd~S- 98 (1378)
T PLN02858 46 -----------------------LGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQK---GAVILIRS- 98 (1378)
T ss_pred -----------------------cCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCC---cCEEEECC-
Confidence 0123456788889999999999995 4677776 345555554 56666555
Q ss_pred cccccccccccCCCHHHHHHhHhC--CCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEe-cC
Q 012349 199 GVEAELEAVPRIITPTQMINRATG--VPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NG 275 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg--~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~-s~ 275 (465)
.+.+++ ...+.+.+.+ .| .......|..||.-|. .|..+ ++++++++..++++.+|+..+-+++. ..
T Consensus 99 Ti~p~~-----~~~la~~l~~-~g~~~~~lDaPVsGg~~~A~---~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~~G 168 (1378)
T PLN02858 99 TILPLQ-----LQKLEKKLTE-RKEQIFLVDAYVSKGMSDLL---NGKLM-IIASGRSDAITRAQPFLSAMCQKLYTFEG 168 (1378)
T ss_pred CCCHHH-----HHHHHHHHHh-cCCceEEEEccCcCCHHHHh---cCCeE-EEEcCCHHHHHHHHHHHHHhcCceEEecC
Confidence 344431 1122222222 12 1011123444454443 45543 46678888889999999988877764 35
Q ss_pred ChHHH-HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcccCchhHHH-
Q 012349 276 DLVTH-EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWY- 353 (465)
Q Consensus 276 Di~gv-e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~- 353 (465)
+. |. ...|++-|. .......++.|+..++++.|.+++.+.. .+.+.. +++..+
T Consensus 169 ~~-G~g~~~KL~nN~------------------l~~~~~~a~aEAl~la~~~Gld~~~l~~-----vl~~s~-g~s~~~~ 223 (1378)
T PLN02858 169 EI-GAGSKVKMVNEL------------------LEGIHLVASAEAMALGVRAGIHPWIIYD-----IISNAA-GSSWIFK 223 (1378)
T ss_pred CC-CHhHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHhcCC-ccCHHHH
Confidence 54 43 223333332 1123346788999999999999987753 222221 111111
Q ss_pred --HHHHhcCCChhhHhHhhcCCccc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc-------
Q 012349 354 --GQELAKGRLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM------- 423 (465)
Q Consensus 354 --G~~l~~g~~~~~~~~~~~~~~~v-EG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~------- 423 (465)
+..+.++.- ...-.+ -....+..+.+++++.|+ + +|+...+++++..
T Consensus 224 ~~~~~~~~~d~--------~~~F~l~l~~KDl~la~~~A~~~g~--------------~-lpl~~~a~~~~~~a~~~G~g 280 (1378)
T PLN02858 224 NHVPLLLKDDY--------IEGRFLNVLVQNLGIVLDMAKSLPF--------------P-LPLLAVAHQQLISGSSSMQG 280 (1378)
T ss_pred hhhhHhhcCCC--------CCCchhHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHHHHHhcCCC
Confidence 122222210 000011 223455577888999984 6 7998888887733
Q ss_pred CCCHHHHHHHHHhcccCCCcccccccccceeeecccc
Q 012349 424 RESPIQAILEALRDETMNDPRDRIEIAQTHVFYRPSL 460 (465)
Q Consensus 424 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (465)
+.+ ..++.+++++.... +++-+-+.-.|.|+-
T Consensus 281 ~~D-~sav~~~~~~~~g~----~~~~~~~~~~~~~~~ 312 (1378)
T PLN02858 281 DDT-ATSLAKVWEKVFGV----NILEAANRELYKPED 312 (1378)
T ss_pred ccC-hHHHHHHHHHHcCC----CccccccccccChHH
Confidence 333 33444555543222 344444444555543
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=102.78 Aligned_cols=164 Identities=17% Similarity=0.172 Sum_probs=108.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||+|+|+|+|++|+++|..|++. | |+|++-.|+.+...+. .. .++.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a-g-----~eV~igs~r~~~~~~a--------~a-------------~~l~------- 46 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA-G-----HEVIIGSSRGPKALAA--------AA-------------AALG------- 46 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC-C-----CeEEEecCCChhHHHH--------HH-------------Hhhc-------
Confidence 68999999999999999999999 7 9999997776532210 00 0110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
..++. ..+++|.+.+|+||++||-..+.++++++...+. +++||+++|.+..
T Consensus 47 -----------------------~~i~~-~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~----~KIvID~tnp~~~ 98 (211)
T COG2085 47 -----------------------PLITG-GSNEDAAALADVVVLAVPFEAIPDVLAELRDALG----GKIVIDATNPIEV 98 (211)
T ss_pred -----------------------ccccc-CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhC----CeEEEecCCCccc
Confidence 01222 3456788999999999999999999999998776 4799999998642
Q ss_pred ----cc-cccccCCCHHHHHHhHhCCCCccEEEEeCCch--hhhhhc---c-CceEEEEeCCh-hHHHHHHHHHcCCCCe
Q 012349 203 ----EL-EAVPRIITPTQMINRATGVPIENILYLGGPNI--ASEIYN---K-EYANARICGAE-KWRKPLAKFLRRPHFT 270 (465)
Q Consensus 203 ----~~-~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~--a~ev~~---g-~~t~~~~~~~~-~~~~~l~~ll~~~g~~ 270 (465)
.. ...+.....++.++++++.. + ++..-|+ +..+.. . .-..+.+++|+ +..+.+.++.+..||+
T Consensus 99 ~~~~~~~~~~~~~~saae~va~~lp~a--k--VVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 99 NGEPGDLYLVPSEGSAAEIVAKLLPGA--K--VVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred cCCccccccCCCCCcHHHHHHHHCCCc--c--hhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHHHHHHHHhcCcc
Confidence 10 00123456789999988743 2 1222111 122221 1 11223345555 4567888888888887
Q ss_pred EE
Q 012349 271 VW 272 (465)
Q Consensus 271 v~ 272 (465)
..
T Consensus 175 ~l 176 (211)
T COG2085 175 PL 176 (211)
T ss_pred ee
Confidence 65
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-09 Score=108.36 Aligned_cols=216 Identities=18% Similarity=0.216 Sum_probs=137.4
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+.++|+|||.|.+|..+|..+|++ | ++|.-+|.++..++. +|++. .|....
T Consensus 7 ~~~~~I~ViGLGYVGLPlA~~fA~~-G-----~~ViG~DIn~~~Vd~---------ln~G~----------~~i~e~--- 58 (436)
T COG0677 7 NMSATIGVIGLGYVGLPLAAAFASA-G-----FKVIGVDINQKKVDK---------LNRGE----------SYIEEP--- 58 (436)
T ss_pred CCceEEEEEccccccHHHHHHHHHc-C-----CceEeEeCCHHHHHH---------HhCCc----------ceeecC---
Confidence 3458999999999999999999999 8 899999999988886 44443 122110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCC
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITV 190 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~ 190 (465)
+ .++++.+.... ..+++|+|.++ +..||++|+|||.. ++.+..+.|++++++ +
T Consensus 59 --~----~~~~v~~~v~~-------g~lraTtd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k---G 121 (436)
T COG0677 59 --D----LDEVVKEAVES-------GKLRATTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKK---G 121 (436)
T ss_pred --c----HHHHHHHHHhc-------CCceEecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC---C
Confidence 0 11222221111 25899999987 56999999999974 688999999999987 5
Q ss_pred CEEEEeeccccccccccccCCCHHHHHHhH-hCCCC-ccEEEEeC-----Cchhh-hhhccCceEEEEeC-ChhHHHHHH
Q 012349 191 PVIISLAKGVEAELEAVPRIITPTQMINRA-TGVPI-ENILYLGG-----PNIAS-EIYNKEYANARICG-AEKWRKPLA 261 (465)
Q Consensus 191 ~ivIs~~kGi~~~~~~~~~~~~~se~I~e~-lg~~~-~~i~vlsG-----P~~a~-ev~~g~~t~~~~~~-~~~~~~~l~ 261 (465)
..|| +-..+.+. +...+..-+.+. .|... ..+.+-.. |+... |+. .. .- ++++ +++..+..+
T Consensus 122 ~LVI-lEST~~PG-----TTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~-~~-~k-VIgG~tp~~~e~a~ 192 (436)
T COG0677 122 DLVI-LESTTPPG-----TTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELV-NN-PK-VIGGVTPKCAELAA 192 (436)
T ss_pred CEEE-EecCCCCC-----cHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhh-cC-Cc-eeecCCHHHHHHHH
Confidence 6544 43344444 223233333333 22111 23333333 44332 111 11 11 3344 455567777
Q ss_pred HHHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCC
Q 012349 262 KFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAE 328 (465)
Q Consensus 262 ~ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~ 328 (465)
.++++---.+...+|....|+++.+-|++ -+-| ....+|+..+|+++|+
T Consensus 193 ~lY~~iv~~~~~vts~~tAEm~Kl~EN~f------------RdVN------IALaNElali~~~~GI 241 (436)
T COG0677 193 ALYKTIVEGVIPVTSARTAEMVKLTENTF------------RDVN------IALANELALICNAMGI 241 (436)
T ss_pred HHHHHheEEEEEcCChHHHHHHHHHhhhh------------hHHH------HHHHHHHHHHHHHhCC
Confidence 77776555577889999999999988852 1111 2346888899999887
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.5e-09 Score=105.92 Aligned_cols=176 Identities=17% Similarity=0.134 Sum_probs=112.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|||+|.||+.||..++.+ | ++|++|+++++..++.. +.+.... +++.+.. ..+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G-----~~V~l~D~~~~~~~~~~-----~~i~~~~---~~~~~~~-~~~~------ 65 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-G-----LDVVAWDPAPGAEAALR-----ANVANAW---PALERQG-LAPG------ 65 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHH-----HHHHHHH---HHHHHcC-CChh------
Confidence 46899999999999999999998 8 99999999987665421 1121110 0000000 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.....+..++++++++.+||+||.|+|.. ..++++.++.+++++ ++++.|.|.|+
T Consensus 66 --------------------~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~---~aIlaSnTS~l 122 (321)
T PRK07066 66 --------------------ASPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKP---DAIIASSTSGL 122 (321)
T ss_pred --------------------hHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCC---CeEEEECCCcc
Confidence 00125677889999999999999999976 477788999998887 67777777666
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEec-C
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-G 275 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s-~ 275 (465)
... + +.+.+..| .++.+. ..|-+.. ....++.+ .+++..+.+.+++...|...... .
T Consensus 123 ~~s-----------~-la~~~~~p-~R~~g~HffnP~~~~-----pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~k 184 (321)
T PRK07066 123 LPT-----------D-FYARATHP-ERCVVGHPFNPVYLL-----PLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRK 184 (321)
T ss_pred CHH-----------H-HHHhcCCc-ccEEEEecCCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCC
Confidence 543 3 55555543 333222 2222211 11222222 35677888999999989766554 6
Q ss_pred ChHHH
Q 012349 276 DLVTH 280 (465)
Q Consensus 276 Di~gv 280 (465)
|+-|-
T Consensus 185 d~pGF 189 (321)
T PRK07066 185 EVPGF 189 (321)
T ss_pred CCccH
Confidence 77653
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-09 Score=106.26 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=102.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||+++|..|.++ | ++|++|+++++..+++. +. +.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~-g-----~~V~~~d~~~~~~~~a~--------~~----------------g~------ 44 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL-G-----HTVYGVSRRESTCERAI--------ER----------------GL------ 44 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHH--------HC----------------CC------
Confidence 6899999999999999999988 7 89999999876544310 00 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
-...+++. +++.++|+||+|+|.+...++++++.+++++ ++ +|+.+.++...
T Consensus 45 -----------------------~~~~~~~~-~~~~~aDlVilavp~~~~~~~~~~l~~~l~~---~~-ii~d~~Svk~~ 96 (279)
T PRK07417 45 -----------------------VDEASTDL-SLLKDCDLVILALPIGLLLPPSEQLIPALPP---EA-IVTDVGSVKAP 96 (279)
T ss_pred -----------------------cccccCCH-hHhcCCCEEEEcCCHHHHHHHHHHHHHhCCC---Cc-EEEeCcchHHH
Confidence 00123344 3578999999999999999999999988875 45 44555455432
Q ss_pred ccccccCCCHHHHHHhHhCCC--CccEEEEeCCc-----hhh-hhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEe
Q 012349 204 LEAVPRIITPTQMINRATGVP--IENILYLGGPN-----IAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~--~~~i~vlsGP~-----~a~-ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
..+.+.+....- .+| +.||. .+. .+..|.+..++.. .+++..+.++++++..|.+++.
T Consensus 97 ---------~~~~~~~~~~~~v~~HP---m~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~ 164 (279)
T PRK07417 97 ---------IVEAWEKLHPRFVGSHP---MAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYT 164 (279)
T ss_pred ---------HHHHHHHhhCCceeeCC---cCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 111122211100 011 22332 111 1234444333332 3456778899999999988765
Q ss_pred cCChHHHHHHHHHHHH
Q 012349 274 NGDLVTHEVMGGLKNV 289 (465)
Q Consensus 274 s~Di~gve~~galKNv 289 (465)
.+.-.--+..+..-|.
T Consensus 165 ~~~~~hD~~~a~~shl 180 (279)
T PRK07417 165 ADPEEHDRAVALISHL 180 (279)
T ss_pred cCHHHHHHHHHHHcch
Confidence 5443333333333333
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.1e-09 Score=105.89 Aligned_cols=166 Identities=20% Similarity=0.130 Sum_probs=101.3
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
.+...+||+|||+|.||.++|..|.+. |. .++|++|+|+++..+.+ .+. +.
T Consensus 2 ~~~~~~~I~IIG~G~mG~sla~~l~~~-g~---~~~V~~~dr~~~~~~~a---------~~~---------------g~- 52 (307)
T PRK07502 2 SAPLFDRVALIGIGLIGSSLARAIRRL-GL---AGEIVGADRSAETRARA---------REL---------------GL- 52 (307)
T ss_pred CccCCcEEEEEeeCHHHHHHHHHHHhc-CC---CcEEEEEECCHHHHHHH---------HhC---------------CC-
Confidence 334558999999999999999999987 61 14899999987644321 100 00
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
....+.+.+++++++|+||+|||+..+.++++++.+++++ +++|+ ...
T Consensus 53 ----------------------------~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~---~~iv~-dvg 100 (307)
T PRK07502 53 ----------------------------GDRVTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKP---GAIVT-DVG 100 (307)
T ss_pred ----------------------------CceecCCHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCC---CCEEE-eCc
Confidence 0123355667788999999999999999999999888876 55444 433
Q ss_pred cccccccccccCCCHHHHHHhHhCCC-----CccEE--EEeCCchhh-hhhccCceEEEE--eCChhHHHHHHHHHcCCC
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVP-----IENIL--YLGGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPH 268 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~-----~~~i~--vlsGP~~a~-ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g 268 (465)
++... ..+.+.+.++.. .+++. ..+||..+. ++..|.+..++. +.+++..+.++++|+..|
T Consensus 101 s~k~~---------~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG 171 (307)
T PRK07502 101 SVKAS---------VIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALG 171 (307)
T ss_pred cchHH---------HHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 33322 112233332211 01110 112333221 333454333332 235567788999999999
Q ss_pred CeEEec
Q 012349 269 FTVWDN 274 (465)
Q Consensus 269 ~~v~~s 274 (465)
.+++..
T Consensus 172 ~~~~~~ 177 (307)
T PRK07502 172 ARVEEM 177 (307)
T ss_pred CEEEEc
Confidence 887664
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-08 Score=101.42 Aligned_cols=179 Identities=18% Similarity=0.172 Sum_probs=110.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+.||+|||+|.||..||..++.+ | ++|++|+++++.+++... ++...+.... +.. .+....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~-G-----~~V~l~d~~~~~~~~~~~-~i~~~~~~~~-------~~g-~~~~~~---- 65 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA-G-----VDVLVFETTEELATAGRN-RIEKSLERAV-------SRG-KLTERE---- 65 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHH-HHHHHHHHHH-------hcc-cCChhh----
Confidence 45899999999999999999999 8 999999999987765321 2211111110 000 011000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhh-hccCCCCEEEEeecc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYW-KERITVPVIISLAKG 199 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l-~~~~~~~ivIs~~kG 199 (465)
. ++.+.+++.++|+ +++++||+||.|+|.+ ..++++.++..++ ++ +++++|.+.+
T Consensus 66 ---~---------------~~~~~~l~~~~~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~---~~il~snTS~ 123 (286)
T PRK07819 66 ---R---------------DAALARLRFTTDL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDP---DAVLASNTSS 123 (286)
T ss_pred ---H---------------HHHHhCeEeeCCH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 0011367788999 4589999999999976 5667788888887 66 7888888877
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEE--EEeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHc-CCCCeEEec
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLR-RPHFTVWDN 274 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~--vlsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~-~~g~~v~~s 274 (465)
+... .+.+....+ .++. ....|.... . ...++. ..+++..+.+..++. ..+..+...
T Consensus 124 ~~~~------------~la~~~~~~-~r~~g~hf~~P~~~~---~--lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 124 IPIM------------KLAAATKRP-GRVLGLHFFNPVPVL---P--LVELVPTLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred CCHH------------HHHhhcCCC-ccEEEEecCCCcccC---c--eEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 7654 244444433 2322 122222211 1 112232 346677888888866 467665555
Q ss_pred CChHHH
Q 012349 275 GDLVTH 280 (465)
Q Consensus 275 ~Di~gv 280 (465)
.|.-|-
T Consensus 186 ~d~pGf 191 (286)
T PRK07819 186 QDRSGF 191 (286)
T ss_pred cCCCCh
Confidence 775554
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=109.59 Aligned_cols=178 Identities=18% Similarity=0.180 Sum_probs=111.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||+.||..++++ | ++|++|+++++.+++... ++.+.++... +.. .+....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a-G-----~~V~l~d~~~e~l~~~~~-~i~~~l~~~~-------~~G-~~~~~~---- 65 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA-G-----HQVLLYDIRAEALARAIA-GIEARLNSLV-------TKG-KLTAEE---- 65 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------hcC-CCCHHH----
Confidence 46899999999999999999999 8 999999999987765321 1111111100 000 011000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc--chHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--TETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps--~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
++ ..+.+++.++|+++ +.+||+||.|+|. +..+.++.++..++++ ++++.|.+.++
T Consensus 66 -----~~-------------~~~~~i~~~~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~---~~IlasnTStl 123 (503)
T TIGR02279 66 -----CE-------------RTLKRLIPVTDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPA---DTIIASNTSSL 123 (503)
T ss_pred -----HH-------------HHHhccEEeCCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEECCCCC
Confidence 00 00125778889865 6899999999997 4566778888888876 67776777666
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEE--EEeCCchhhhhhccCceEEEEeC---ChhHHHHHHHHHcCCCCeEEecC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARICG---AEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~--vlsGP~~a~ev~~g~~t~~~~~~---~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
... + +.+.+..+. ++. ....|.... .... ++.+ +++..+.+..++...+.......
T Consensus 124 ~i~-----------~-iA~~~~~p~-r~~G~HFf~Papv~-----~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~ 184 (503)
T TIGR02279 124 SIT-----------A-IAAGLARPE-RVAGLHFFNPAPVM-----ALVE-VVSGLATAAEVAEQLYETALAWGKQPVHCH 184 (503)
T ss_pred CHH-----------H-HHHhcCccc-ceEEEeccCccccC-----ceEE-EeCCCCCCHHHHHHHHHHHHHcCCeeeEeC
Confidence 543 2 444454332 211 112222211 1222 2333 67788999999999898877777
Q ss_pred ChHHH
Q 012349 276 DLVTH 280 (465)
Q Consensus 276 Di~gv 280 (465)
|.-|-
T Consensus 185 d~pGf 189 (503)
T TIGR02279 185 STPGF 189 (503)
T ss_pred CCCCc
Confidence 76553
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=103.43 Aligned_cols=168 Identities=14% Similarity=0.119 Sum_probs=111.2
Q ss_pred hhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhh
Q 012349 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (465)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~ 103 (465)
..|.||.|=- .+.++|||+|||+|.||.++|..|.+. | ++|++|++++.. +. ...
T Consensus 22 ~~~~~~~~~~-----~~~~~~kI~IIG~G~mG~slA~~L~~~-G-----~~V~~~d~~~~~-~~---------a~~---- 76 (304)
T PLN02256 22 DYESRLQEEL-----EKSRKLKIGIVGFGNFGQFLAKTFVKQ-G-----HTVLATSRSDYS-DI---------AAE---- 76 (304)
T ss_pred ChHhHHhHhh-----ccCCCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECccHH-HH---------HHH----
Confidence 3566766522 333568999999999999999999887 7 789999988521 10 000
Q ss_pred HHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCcchHHHHHHHH-H
Q 012349 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEI-S 181 (465)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIlaVps~~l~~vl~~l-~ 181 (465)
+ ++...++.++++ .++|+||+|||++.+.++++++ .
T Consensus 77 ----------~--------------------------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~~ 114 (304)
T PLN02256 77 ----------L--------------------------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLPL 114 (304)
T ss_pred ----------c--------------------------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhhh
Confidence 0 122345666655 4699999999999999999998 5
Q ss_pred HhhhccCCCCEEEEeec--cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhcc----CceEEEE-----
Q 012349 182 RYWKERITVPVIISLAK--GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNK----EYANARI----- 250 (465)
Q Consensus 182 ~~l~~~~~~~ivIs~~k--Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g----~~t~~~~----- 250 (465)
+++++ +++|++++. |... +.+.+.++.. .+ .+...|++..+...+ ...+...
T Consensus 115 ~~l~~---~~iviDv~SvK~~~~------------~~~~~~l~~~-~~-~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~ 177 (304)
T PLN02256 115 QRLKR---STLFVDVLSVKEFPK------------NLLLQVLPEE-FD-ILCTHPMFGPESGKGGWAGLPFVYDKVRIGD 177 (304)
T ss_pred hccCC---CCEEEecCCchHHHH------------HHHHHhCCCC-Ce-EEecCCCCCCCCCccccCCCeEEEecceecC
Confidence 66766 678887764 3322 3466666421 12 466778888775532 2211111
Q ss_pred e-CChhHHHHHHHHHcCCCCeEEecC
Q 012349 251 C-GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 251 ~-~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
. .+++..+.+.++++..|-++...+
T Consensus 178 ~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 178 EGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 1 134567889999998898876644
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-09 Score=110.71 Aligned_cols=155 Identities=13% Similarity=0.102 Sum_probs=99.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
+|+|||.|.||.+||..|+++ | ++|++|+|+++.++.+. +.+ .++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-G-----~~V~v~drt~~~~~~l~--------~~~-------------~~g-------- 45 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-G-----FTVSVYNRTPEKTDEFL--------AEH-------------AKG-------- 45 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-C-----CeEEEEeCCHHHHHHHH--------hhc-------------cCC--------
Confidence 489999999999999999999 8 89999999987665421 110 000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHh---cCCCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal---~~aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
..+...+++++++ +.+|+||+++|+ ..++++++.+.+++.+ +++||.++++.
T Consensus 46 ---------------------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~---g~iIID~gns~ 101 (467)
T TIGR00873 46 ---------------------KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEK---GDIIIDGGNSH 101 (467)
T ss_pred ---------------------CCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCC---CCEEEECCCcC
Confidence 0122334455543 568999999998 7899999999999876 68899888876
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCe
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~ 270 (465)
...+ ... .+.+.+ .|.......|..||.-|. .| + .++++++++..++++.+|+..+-+
T Consensus 102 ~~~t-----~~~-~~~l~~-~gi~fvdapVsGG~~gA~---~G-~-~im~GG~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 102 YPDT-----ERR-YKELKA-KGILFVGSGVSGGEEGAR---KG-P-SIMPGGSAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred HHHH-----HHH-HHHHHh-cCCEEEcCCCCCCHHHHh---cC-C-cCCCCCCHHHHHHHHHHHHHHhhh
Confidence 5542 111 111211 121100112333333222 34 3 356788888888888888865443
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=4e-08 Score=106.15 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=110.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|||+|.||..||..++.+ | ++|++|+++++.+++... ++.+.+++.. +.. .+....
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~a-G-----~~V~l~D~~~e~l~~~~~-~i~~~l~~~~-------~~G-~~~~~~---- 67 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQA-G-----HTVLLYDARAGAAAAARD-GIAARLAKLV-------EKG-KLTAEQ---- 67 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------HcC-CCCHHH----
Confidence 46899999999999999999998 8 999999999987765321 1221121110 000 011000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +..+..++.++++++ +.+||+||.|+|.. ..+.++.++..++++ ++++.|.+.++
T Consensus 68 -----~-------------~~~~~~i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~---~ailasntStl 125 (507)
T PRK08268 68 -----A-------------DAALARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSP---DCILATNTSSL 125 (507)
T ss_pred -----H-------------HHHHhCeEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 0 001125778888865 67999999999975 455667888887776 67776777666
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccE--EEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENI--LYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i--~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+.. .+.+.+..+ .++ .....|.... ....++.+ .+++..+.+..++...+..+....|
T Consensus 126 ~i~------------~la~~~~~p-~r~~G~hff~Pa~v~-----~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d 187 (507)
T PRK08268 126 SIT------------AIAAALKHP-ERVAGLHFFNPVPLM-----KLVEVVSGLATDPAVADALYALARAWGKTPVRAKD 187 (507)
T ss_pred CHH------------HHHhhcCCc-ccEEEEeecCCcccC-----eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecC
Confidence 653 255545433 221 1122222222 22222222 3677888899999888877777677
Q ss_pred hHH
Q 012349 277 LVT 279 (465)
Q Consensus 277 i~g 279 (465)
.-|
T Consensus 188 ~pG 190 (507)
T PRK08268 188 TPG 190 (507)
T ss_pred CCC
Confidence 655
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=105.08 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=102.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||+|.||+++|..|.++ | ++|.+|+++++..+. .... ...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~-G-----~~v~i~~~~~~~~~~---------~~a~------------~~~-------- 45 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA-G-----PDVFIIGYDPSAAQL---------ARAL------------GFG-------- 45 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc-C-----CCeEEEEeCCCHHHH---------HHHh------------cCC--------
Confidence 4799999999999999999988 7 899999998754321 0000 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh-hhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~-l~~~~~~~ivIs~~kGi~~ 202 (465)
+ ....++++++++++||+||+|||++.+.++++++.+. +++ ++ +|+...++..
T Consensus 46 ----------------~------~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l~~~~l~~---~~-ivtDv~SvK~ 99 (359)
T PRK06545 46 ----------------V------IDELAADLQRAAAEADLIVLAVPVDATAALLAELADLELKP---GV-IVTDVGSVKG 99 (359)
T ss_pred ----------------C------CcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhcCCCC---Cc-EEEeCccccH
Confidence 0 0123467778889999999999999999999999873 665 44 5554445433
Q ss_pred cccccccCCCHHHHHHhHhCCCC-----ccEE--EEeCCchhh-hhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEE
Q 012349 203 ELEAVPRIITPTQMINRATGVPI-----ENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVW 272 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~-----~~i~--vlsGP~~a~-ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~ 272 (465)
. +.+.+++.++... +|++ ..+||..+. ++..+.+..++.. .+++..+.++++|+..|-+++
T Consensus 100 ~---------i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v 170 (359)
T PRK06545 100 A---------ILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFV 170 (359)
T ss_pred H---------HHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 1123333322111 1111 123333333 4556665544443 356678899999999998875
Q ss_pred ec
Q 012349 273 DN 274 (465)
Q Consensus 273 ~s 274 (465)
..
T Consensus 171 ~~ 172 (359)
T PRK06545 171 VL 172 (359)
T ss_pred EC
Confidence 43
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.1e-08 Score=109.38 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=118.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|||+|.||..||..++.+ | ++|++++++++.+++... ++...+.+.. +.. .+....
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~-------~~g-~~~~~~---- 373 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASK-G-----VPVIMKDINQKALDLGMT-EAAKLLNKQV-------ERG-KIDGAK---- 373 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------HcC-CCChhh----
Confidence 46899999999999999999999 8 999999999987765321 1111121110 000 111000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +..+..++.++|++ ++.+||+||.|||.. ..++++.++.+++++ ++++.|.|.++
T Consensus 374 ---~---------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasNTSsl 431 (715)
T PRK11730 374 ---M---------------AGVLSSIRPTLDYA-GFERVDVVVEAVVENPKVKAAVLAEVEQKVRE---DTILASNTSTI 431 (715)
T ss_pred ---H---------------HHHHhCeEEeCCHH-HhcCCCEEEecccCcHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 0 00013688889985 579999999999975 688999999999987 78888888887
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+.. + |.+.+..| .++..+ ..|-... ....++.+ .+++..+.+.+++...|.......|
T Consensus 432 ~i~-----------~-la~~~~~p-~r~~g~Hff~P~~~~-----~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d 493 (715)
T PRK11730 432 SIS-----------L-LAKALKRP-ENFCGMHFFNPVHRM-----PLVEVIRGEKTSDETIATVVAYASKMGKTPIVVND 493 (715)
T ss_pred CHH-----------H-HHhhcCCC-ccEEEEecCCccccc-----ceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecC
Confidence 664 3 55555543 233222 2222211 12222222 3567788888888888887777788
Q ss_pred hHHHHH
Q 012349 277 LVTHEV 282 (465)
Q Consensus 277 i~gve~ 282 (465)
.-|-..
T Consensus 494 ~pGfv~ 499 (715)
T PRK11730 494 CPGFFV 499 (715)
T ss_pred cCchhH
Confidence 777543
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=102.30 Aligned_cols=178 Identities=20% Similarity=0.212 Sum_probs=112.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||+.||..+|.. | ++|++++++++.+++.... +...+++. .+.. .+....
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~-G-----~~V~l~D~~~~~~~~~~~~-i~~~l~k~-------~~~g-~l~~~~---- 63 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA-G-----YDVVLKDISPEALERALAY-IEKNLEKL-------VEKG-KLTEEE---- 63 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc-C-----CceEEEeCCHHHHHHHHHH-HHHHHHHH-------HhcC-CCChhh----
Confidence 47999999999999999999997 7 8999999998877654321 11111111 0110 111100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +..+..++.++++. ++.+||+||.+|+.. ..+++++++..++++ ++++-|.|.++
T Consensus 64 -----~-------------~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~---~aIlASNTSsl 121 (307)
T COG1250 64 -----A-------------DAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKP---DAILASNTSSL 121 (307)
T ss_pred -----H-------------HHHHhhccccCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCC---CcEEeeccCCC
Confidence 0 00123577778876 689999999999976 688899999999987 78888999888
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEE--EeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILY--LGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~v--lsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+.. + +.+.+..| .++.. ...|-... ....++.+ .+++..+++.++..+.+-.+....|
T Consensus 122 ~it-----------~-ia~~~~rp-er~iG~HFfNP~~~m-----~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D 183 (307)
T COG1250 122 SIT-----------E-LAEALKRP-ERFIGLHFFNPVPLM-----PLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKD 183 (307)
T ss_pred CHH-----------H-HHHHhCCc-hhEEEEeccCCCCcc-----eeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecC
Confidence 764 2 55555443 23221 12222221 11222222 3567778888888877744455566
Q ss_pred hHH
Q 012349 277 LVT 279 (465)
Q Consensus 277 i~g 279 (465)
.-|
T Consensus 184 ~pG 186 (307)
T COG1250 184 VPG 186 (307)
T ss_pred CCc
Confidence 554
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.2e-08 Score=107.10 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=117.3
Q ss_pred CceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La-~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+||+|||+|.||+.||..++ .+ | ++|++|+.+++.+++... ++.+.+.+.. +.. .+..-.
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~-------~~~-~~~~~~--- 365 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKA-G-----IPVRIKDINPQGINNALK-YAWKLLDKGV-------KRR-HMTPAE--- 365 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------HcC-CCCHHH---
Confidence 468999999999999999998 46 7 899999999887665321 1111111110 000 011000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+ +..+..++.++|++ ++.+||+||.|||.. ..++++.++.+++++ ++++.|.|.+
T Consensus 366 -----------~--------~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS~ 422 (699)
T TIGR02440 366 -----------R--------DNQMALITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAA---HTIFASNTSS 422 (699)
T ss_pred -----------H--------HHHHcCeEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCC---CcEEEeCCCC
Confidence 0 00013688889985 689999999999986 678899999999987 7888888888
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
++.. + |.+.+..| .++..+ ..|-+.. ....++.+ .+++..+.+.+++...|....+..
T Consensus 423 l~i~-----------~-la~~~~~p-~r~~g~HffnP~~~~-----~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~ 484 (699)
T TIGR02440 423 LPIG-----------Q-IAAAASRP-ENVIGLHYFSPVEKM-----PLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVA 484 (699)
T ss_pred CCHH-----------H-HHHhcCCc-ccEEEEecCCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 7764 3 45555443 233222 2222211 12222222 356778888899998888877778
Q ss_pred ChHHHHHH
Q 012349 276 DLVTHEVM 283 (465)
Q Consensus 276 Di~gve~~ 283 (465)
|.-|-...
T Consensus 485 d~pGfi~n 492 (699)
T TIGR02440 485 DKAGFYVN 492 (699)
T ss_pred cccchHHH
Confidence 87665443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.8e-08 Score=108.34 Aligned_cols=181 Identities=14% Similarity=0.104 Sum_probs=117.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
...||+|||+|.||..||..++.+ | ++|++++++++.+++... ++...++... +.. .+....
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~~~~~~-------~~g-~~~~~~--- 373 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASK-G-----TPIVMKDINQHSLDLGLT-EAAKLLNKQV-------ERG-RITPAK--- 373 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------HcC-CCChhh---
Confidence 346899999999999999999999 8 999999999987765321 1111111110 000 111000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
. +..+..++.++|++ ++.+||+||.|||.+ ..++++.++.+++++ ++++.|.|.+
T Consensus 374 ------~-------------~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~---~~ilasnTS~ 430 (714)
T TIGR02437 374 ------M-------------AGVLNGITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVRE---DAILASNTST 430 (714)
T ss_pred ------H-------------HHHHhCeEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 00113688888984 579999999999976 688999999999987 7888888887
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
++.. + |.+.+..| .++..+ ..|-+.. ....++.+ .+++..+.+.+++...|.......
T Consensus 431 l~i~-----------~-ia~~~~~p-~r~ig~Hff~P~~~~-----~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~ 492 (714)
T TIGR02437 431 ISIS-----------L-LAKALKRP-ENFCGMHFFNPVHRM-----PLVEVIRGEKSSDETIATVVAYASKMGKTPIVVN 492 (714)
T ss_pred CCHH-----------H-HHhhcCCc-ccEEEEecCCCcccC-----ceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 7664 3 45555543 233222 2222211 11222222 356778888888888887777777
Q ss_pred ChHHHH
Q 012349 276 DLVTHE 281 (465)
Q Consensus 276 Di~gve 281 (465)
|.-|-.
T Consensus 493 d~pGfi 498 (714)
T TIGR02437 493 DCPGFF 498 (714)
T ss_pred Ccccch
Confidence 876643
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=105.79 Aligned_cols=181 Identities=16% Similarity=0.160 Sum_probs=115.2
Q ss_pred CceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La-~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..||+|||+|.||+.||..++ .+ | ++|++++++++.+++... .+.+.+.+.. +.. .+....
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~-G-----~~V~l~d~~~~~l~~~~~-~~~~~l~~~~-------~~~-~~~~~~--- 370 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKA-G-----LPVRIKDINPQGINHALK-YSWDLLDKKV-------KRR-HLKPSE--- 370 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHc-C-----CeEEEEeCCHHHHHHHHH-HHHHHHHHHH-------HcC-CCCHHH---
Confidence 478999999999999999999 66 7 899999999876665321 1111111110 000 011000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
. +..+..++.++|+ +++.+||+||.|||.. ..++++.++.+++++ ++++.|.|.+
T Consensus 371 ------~-------------~~~~~~i~~~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~---~~ilasnTS~ 427 (708)
T PRK11154 371 ------R-------------DKQMALISGTTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAP---HTIFASNTSS 427 (708)
T ss_pred ------H-------------HHHHhcEEEeCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0 0011368889998 4689999999999986 678899999999988 7888888888
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
++.. + |.+.+..+ .++..+ ..|-+.. ....++.+ .+++..+.+.+++...|.......
T Consensus 428 l~i~-----------~-la~~~~~p-~r~ig~Hff~P~~~~-----~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~ 489 (708)
T PRK11154 428 LPIG-----------Q-IAAAAARP-EQVIGLHYFSPVEKM-----PLVEVIPHAKTSAETIATTVALAKKQGKTPIVVR 489 (708)
T ss_pred CCHH-----------H-HHHhcCcc-cceEEEecCCccccC-----ceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 7764 3 45555543 233222 2222211 12223322 356777888888888887666667
Q ss_pred ChHHHHH
Q 012349 276 DLVTHEV 282 (465)
Q Consensus 276 Di~gve~ 282 (465)
|.-|-..
T Consensus 490 d~pGfi~ 496 (708)
T PRK11154 490 DGAGFYV 496 (708)
T ss_pred ccCcHHH
Confidence 7655433
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.81 E-value=6e-08 Score=109.04 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=116.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..+|+|||+|.||+.||..++.+ | ++|++|+++++.+++... ++.+.+.+.. +. ..+....
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~-G-----~~V~l~d~~~~~l~~~~~-~i~~~l~~~~-------~~-g~~~~~~---- 395 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK-G-----LKTVLKDATPAGLDRGQQ-QVFKGLNKKV-------KR-KKITSLE---- 395 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC-C-----CcEEEecCCHHHHHHHHH-HHHHHHHHHH-------Hc-CCCCHHH----
Confidence 46899999999999999999999 8 899999999987775321 1111111110 00 0111100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +..+..++.++|++ ++.+||+||.|||.+ ..++++.++.+++++ ++++.|.|.++
T Consensus 396 -----~-------------~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~---~~ilasNTSsl 453 (737)
T TIGR02441 396 -----R-------------DSILSNLTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPP---HCIIASNTSAL 453 (737)
T ss_pred -----H-------------HHHHhCeEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCC---CcEEEEcCCCC
Confidence 0 00113688889985 579999999999976 688899999999987 78888888887
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+.. .|.+.+..| .++..+ ..|-+.. ....++.+ .+++..+.+..++...|....+..|
T Consensus 454 ~i~------------~la~~~~~p-~r~ig~Hff~P~~~m-----~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d 515 (737)
T TIGR02441 454 PIK------------DIAAVSSRP-EKVIGMHYFSPVDKM-----QLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKD 515 (737)
T ss_pred CHH------------HHHhhcCCc-cceEEEeccCCcccC-----ceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECC
Confidence 664 355556544 333222 1222211 12222222 3567778888888888887777788
Q ss_pred hHHH
Q 012349 277 LVTH 280 (465)
Q Consensus 277 i~gv 280 (465)
.-|-
T Consensus 516 ~pGF 519 (737)
T TIGR02441 516 GPGF 519 (737)
T ss_pred cCCc
Confidence 7664
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-07 Score=91.63 Aligned_cols=199 Identities=16% Similarity=0.136 Sum_probs=118.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.++|++||.|+||.+++..|.++ | |.|++|+|+.++.+... +.
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~-G-----~kVtV~dr~~~k~~~f~--------~~----------------------- 77 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKA-G-----YKVTVYDRTKDKCKEFQ--------EA----------------------- 77 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHc-C-----CEEEEEeCcHHHHHHHH--------Hh-----------------------
Confidence 57999999999999999999999 8 99999999987654311 11
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHHHHHHhhh---ccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWK---ERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~~l~~~l~---~~~~~~ivIs~~k 198 (465)
.-++..++.|..+++|+||.+||. .+.++++-.-...+. +. ++..|- +.
T Consensus 78 ------------------------Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g--~~~~vD-mS 130 (327)
T KOG0409|consen 78 ------------------------GARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPG--KKATVD-MS 130 (327)
T ss_pred ------------------------chhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCC--CceEEe-cc
Confidence 123456778889999999999985 466666544222222 21 111121 11
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhh--hccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev--~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
.++++ .+..|.+..-.. ....+-.|-.-..- ..|..+ ++++++++..+....+|+..|-++.+-..
T Consensus 131 Tidp~---------~s~ei~~~i~~~--~~~~vDAPVSGg~~~A~~G~Lt-imagGde~~~~~~~~~~~~mGk~~~~~G~ 198 (327)
T KOG0409|consen 131 TIDPD---------TSLEIAKAISNK--GGRFVDAPVSGGVKGAEEGTLT-IMAGGDEALFEAASPVFKLMGKNVVFLGG 198 (327)
T ss_pred ccCHH---------HHHHHHHHHHhC--CCeEEeccccCCchhhhcCeEE-EEecCcHHHHHHHHHHHHHhcceEEEecc
Confidence 23333 222343333211 11234444332221 245444 34568888889999999999866665443
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
+=--+-++..-| ........++.|...++..+|.++.++.+
T Consensus 199 ~GnG~~~Kl~nn------------------m~~g~~M~g~aEal~la~r~GLd~~~l~e 239 (327)
T KOG0409|consen 199 VGNGQAAKLCNN------------------MLLGSSMVGLAEALALADRLGLDAKKLLE 239 (327)
T ss_pred cCchHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 211111222222 11123346788989999999998877654
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=106.43 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=100.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||+|.||.+++..|.++ |. .++|++|+++++.++.. .+. +.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-G~---~~~V~~~d~~~~~~~~a---------~~~---------------g~------ 49 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-GL---AREVVAVDRRAKSLELA---------VSL---------------GV------ 49 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CC---CCEEEEEECChhHHHHH---------HHC---------------CC------
Confidence 6899999999999999999987 61 14799999987654321 000 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
....+++.++++.++|+||+|||++.++++++++.+++++ ++ +|+...|+...
T Consensus 50 -----------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~~~~---~~-ii~d~~svk~~ 102 (735)
T PRK14806 50 -----------------------IDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADLKPLLSE---HA-IVTDVGSTKGN 102 (735)
T ss_pred -----------------------CCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHHHHhcCC---Cc-EEEEcCCCchH
Confidence 0012356667788999999999999999999999998765 44 55555455432
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhh-------------hhhccCceEEEEe--CChhHHHHHHHHHcCCC
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIAS-------------EIYNKEYANARIC--GAEKWRKPLAKFLRRPH 268 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~-------------ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g 268 (465)
+.+.+++.++.. .+...|+++. +...+....++.. .+++..+.++++|+..|
T Consensus 103 ---------~~~~l~~~~~~~----~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 169 (735)
T PRK14806 103 ---------VVDAARAVFGEL----PAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVG 169 (735)
T ss_pred ---------HHHHHHHhcccc----CCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 123455554321 1233444442 1223333333332 34566788999999999
Q ss_pred CeEEec
Q 012349 269 FTVWDN 274 (465)
Q Consensus 269 ~~v~~s 274 (465)
-+++..
T Consensus 170 ~~~~~~ 175 (735)
T PRK14806 170 ADVLHM 175 (735)
T ss_pred CEEEEc
Confidence 766554
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=8e-09 Score=91.57 Aligned_cols=99 Identities=25% Similarity=0.485 Sum_probs=60.9
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
...+||+|||+|.+|++|+..|.++ | +.|. +|+|+.+..++. . .+++.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~a-g-----~~v~~v~srs~~sa~~a---------~-------------~~~~~--- 56 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARA-G-----HEVVGVYSRSPASAERA---------A-------------AFIGA--- 56 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHT-T-----SEEEEESSCHH-HHHHH---------H-------------C--TT---
T ss_pred CCccEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeCCccccccc---------c-------------ccccc---
Confidence 3468999999999999999999998 7 7765 456665433220 0 01111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh--hhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY--WKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~--l~~~~~~~ivIs~~ 197 (465)
. ...++.+.+.++|++|++||.+.+.+++++|..+ +.+ +++|+.++
T Consensus 57 ----------------------------~-~~~~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~---g~iVvHtS 104 (127)
T PF10727_consen 57 ----------------------------G-AILDLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRP---GQIVVHTS 104 (127)
T ss_dssp ----------------------------------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-T---T-EEEES-
T ss_pred ----------------------------c-cccccccccccCCEEEEEechHHHHHHHHHHHHhccCCC---CcEEEECC
Confidence 1 1234557789999999999999999999999986 544 67888777
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
-.++.
T Consensus 105 Ga~~~ 109 (127)
T PF10727_consen 105 GALGS 109 (127)
T ss_dssp SS--G
T ss_pred CCChH
Confidence 43433
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-07 Score=95.22 Aligned_cols=141 Identities=24% Similarity=0.304 Sum_probs=92.8
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+++|+||| +|.||+.+|..|.++ | ++|++|+++..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~-G-----~~V~~~d~~~~------------------------------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS-G-----YQVRILEQDDW------------------------------------- 133 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC-C-----CeEEEeCCCcc-------------------------------------
Confidence 458999999 999999999999998 7 89999997531
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
++.++++.+||+||+|||.....++++++.+ +++ +++|+.++ ++
T Consensus 134 -------------------------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~-l~~---~~iv~Dv~-Sv 177 (374)
T PRK11199 134 -------------------------------DRAEDILADAGMVIVSVPIHLTEEVIARLPP-LPE---DCILVDLT-SV 177 (374)
T ss_pred -------------------------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC-CCC---CcEEEECC-Cc
Confidence 0123456789999999999999999999988 766 67777664 22
Q ss_pred cccccccccCCCHHHHHHhHhCCC---CccEEEEeCCchhhhhhccCceEEEEeC-ChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVP---IENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~---~~~i~vlsGP~~a~ev~~g~~t~~~~~~-~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
-.. +.+.+.+..+.+ .+| +.||.... ..+... +.... +++..+.+.++++..|.++...+.
T Consensus 178 K~~---------~~~~~~~~~~~~fvg~HP---m~G~~~~~--~~~~~v-v~~~~~~~~~~~~~~~l~~~lG~~v~~~~~ 242 (374)
T PRK11199 178 KNA---------PLQAMLAAHSGPVLGLHP---MFGPDVGS--LAKQVV-VVCDGRQPEAYQWLLEQIQVWGARLHRISA 242 (374)
T ss_pred cHH---------HHHHHHHhCCCCEEeeCC---CCCCCCcc--cCCCEE-EEcCCCCchHHHHHHHHHHHCCCEEEECCH
Confidence 111 122333333211 111 44554321 223221 22223 445678899999999988876553
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.4e-07 Score=90.83 Aligned_cols=161 Identities=17% Similarity=0.276 Sum_probs=100.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|+|+|+|.|.||..+|..|.++ | +.|.+|+++...... ... ..+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~-g-----~~v~i~g~d~~~~~~----------~~a-----------~~l------- 47 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEA-G-----LVVRIIGRDRSAATL----------KAA-----------LEL------- 47 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHc-C-----CeEEEEeecCcHHHH----------HHH-----------hhc-------
Confidence 358999999999999999999998 7 889899888642111 000 001
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCH-HHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNL-QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl-~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+++ ...+.+. .+++.++|+||+|||-..+.++++++.+.+++ +++|.-++ ++
T Consensus 48 -----------------gv~------d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~~l~~~l~~---g~iv~Dv~-S~ 100 (279)
T COG0287 48 -----------------GVI------DELTVAGLAEAAAEADLVIVAVPIEATEEVLKELAPHLKK---GAIVTDVG-SV 100 (279)
T ss_pred -----------------Ccc------cccccchhhhhcccCCEEEEeccHHHHHHHHHHhcccCCC---CCEEEecc-cc
Confidence 110 1122332 45678899999999999999999999998887 67665443 11
Q ss_pred cccccccccCCCHHHHHHhHhCCC-----CccEEEEeCCchhhhhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEe
Q 012349 201 EAELEAVPRIITPTQMINRATGVP-----IENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~-----~~~i~vlsGP~~a~ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~ 273 (465)
- ..+-+.+.+..+.. .+| +.||.--.....+.....+... +.++.+.+.+++...|-+++.
T Consensus 101 K---------~~v~~a~~~~~~~~~~~vg~HP---M~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~ 168 (279)
T COG0287 101 K---------SSVVEAMEKYLPGDVRFVGGHP---MFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVE 168 (279)
T ss_pred c---------HHHHHHHHHhccCCCeeEecCC---CCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 0 11223444444321 122 3444301123344433333332 346889999999998877766
Q ss_pred cC
Q 012349 274 NG 275 (465)
Q Consensus 274 s~ 275 (465)
.+
T Consensus 169 ~~ 170 (279)
T COG0287 169 MD 170 (279)
T ss_pred cC
Confidence 44
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.1e-07 Score=88.58 Aligned_cols=227 Identities=14% Similarity=0.105 Sum_probs=140.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++||+.||||.+|..-...+|.+ +|..+|++++.+..+...+|.++ -|.|.|++.
T Consensus 1 ~~kiccigagyvggptcavia~k----cp~i~vtvvd~s~~ri~~wnsd~-----------------lpiyepgld---- 55 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALK----CPDIEVTVVDISVPRINAWNSDK-----------------LPIYEPGLD---- 55 (481)
T ss_pred CceEEEecCcccCCcchheeeec----CCceEEEEEecCchHhhcccCCC-----------------CcccCCCHH----
Confidence 47999999999999988888866 34468999999988777655443 366777652
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc---------------chHHHHHHHHHHhhhcc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------TETKEVFEEISRYWKER 187 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps---------------~~l~~vl~~l~~~l~~~ 187 (465)
|+|.. |.+ .++-+++|.+.++..+|+||++|.. .+.+++.+.|+.+-..
T Consensus 56 -------evv~~--crg------knlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~- 119 (481)
T KOG2666|consen 56 -------EVVKQ--CRG------KNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVS- 119 (481)
T ss_pred -------HHHHH--hcC------CceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccC-
Confidence 45543 112 3678899999999999999998843 2577777778776443
Q ss_pred CCCCEEEEeeccccccccccccCCCHHHHHHhHhCCC--CccEEEEeCCchhhhhhccC----ceEEEEeCCh-----hH
Q 012349 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP--IENILYLGGPNIASEIYNKE----YANARICGAE-----KW 256 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~--~~~i~vlsGP~~a~ev~~g~----~t~~~~~~~~-----~~ 256 (465)
++++ +-|...+- ...|.|...+... ...+-+++.|.|..|...-+ +..+.+++.+ ..
T Consensus 120 --~kiv--vekstvpv--------~aaesi~~il~~n~~~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~a 187 (481)
T KOG2666|consen 120 --DKIV--VEKSTVPV--------KAAESIEKILNHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQA 187 (481)
T ss_pred --CeEE--Eeeccccc--------hHHHHHHHHHhcCCCCceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHH
Confidence 4443 34443332 2235566655321 23467899999988755321 4455666532 23
Q ss_pred HHHHHHHHcCCCC-eEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCC
Q 012349 257 RKPLAKFLRRPHF-TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEE 329 (465)
Q Consensus 257 ~~~l~~ll~~~g~-~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~ 329 (465)
.+.+..++...-- .-.++++.+..|+.+..-|.+ .+. ...+-|+.+++...-=+++..++.+.|.+
T Consensus 188 v~~l~~vyehwvp~~~iittntwsselsklaanaf--laq-----rissins~salceatgadv~eva~avg~d 254 (481)
T KOG2666|consen 188 VQALKDVYEHWVPREQIITTNTWSSELSKLAANAF--LAQ-----RISSINSMSALCEATGADVSEVAYAVGTD 254 (481)
T ss_pred HHHHHHHHHhhCcccceeeccccHHHHHHHHHHHH--HHH-----HHhhhHHHHHHHHhcCCCHHHHHHHhccc
Confidence 4556666654321 224567788899988777742 111 11122333344433334555666666654
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-07 Score=90.39 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=115.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|+|++||+|.|..+++..+... |...+ +++..+..+..... ..+..
T Consensus 1 ~~~gfigag~ma~ala~g~~~~-Gi~~~-~~i~~s~~~~~~~~-------------------------~~~~~------- 46 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS-GIIEA-NRIWASVQTERSLG-------------------------LMFEA------- 46 (267)
T ss_pred CceeEechhhhHHHHHhccccc-CCCch-hheeeecCchhhhh-------------------------hhhhc-------
Confidence 6899999999999999999888 86554 45555544221000 00110
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
..++.+.+..+.++.+|+++++||++.+++++.++.+.+.. ..+++|+..|+..+
T Consensus 47 ----------------------~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~~~~~~~~---~~iivS~aaG~tl~ 101 (267)
T KOG3124|consen 47 ----------------------LGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSEIKPKVSK---GKIIVSVAAGKTLS 101 (267)
T ss_pred ----------------------CCceeeechHHHHhhccceeEeecchhHHHHhhcCcccccc---ceEEEEEeecccHH
Confidence 02333333367788999999999999999999999875444 57999999999875
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
.+++.++.+ .+ +++.+||.+.-+..|...+..-+ ...++.+.++++|+..|+...+.+|.+.
T Consensus 102 ------------~l~~~l~~~-~r-viRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~iD 164 (267)
T KOG3124|consen 102 ------------SLESKLSPP-TR-VIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEVPEKCID 164 (267)
T ss_pred ------------HHHHhcCCC-Cc-eEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHhhh
Confidence 356666622 23 57899999998888864222212 2456779999999999999999888654
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=99.07 Aligned_cols=236 Identities=11% Similarity=0.064 Sum_probs=124.1
Q ss_pred ceEEEECccHHHHHH-HHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsal-A~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+++|+|+||+++ +..|++. | ++|+++++++++++.++.+++-.+ ...+.. .
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~-g-----~~V~~vd~~~~~v~aL~~qglY~v----------------~~~~~~---~ 55 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN-G-----FEVTFVDVNQELIDALNKRKSYQV----------------IVVGEN---E 55 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHhcCCCeEE----------------EEecCC---C
Confidence 799999999999855 8888877 7 899999998888877554332000 011000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEe--cCHHH---HhcCCCEEEEecCcchHHHHHHHHHHhhhccC-----CCCE
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVV--TNLQE---AVWDADIVINGLPSTETKEVFEEISRYWKERI-----TVPV 192 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t--~dl~e---al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~-----~~~i 192 (465)
... .. .++... .+.++ ++.++|+|.++|++..+++++..|.+.+.+.. +.-.
T Consensus 56 ~~~-----------~i-------~~v~~~~~~~~~~~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~ 117 (381)
T PRK02318 56 QVE-----------TV-------SNVSAINSADEEAVIEAIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLN 117 (381)
T ss_pred cEE-----------EE-------eeEeeeCCCCHHHHHHHhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCE
Confidence 000 00 022222 12122 34588999999999999999999988775421 0126
Q ss_pred EEEeecccccccc-cc--ccC--CCHHHHHHhHhCCCCccEEEEeCCchhh----hhhccCceEEEEeCChhHHHHHHHH
Q 012349 193 IISLAKGVEAELE-AV--PRI--ITPTQMINRATGVPIENILYLGGPNIAS----EIYNKEYANARICGAEKWRKPLAKF 263 (465)
Q Consensus 193 vIs~~kGi~~~~~-~~--~~~--~~~se~I~e~lg~~~~~i~vlsGP~~a~----ev~~g~~t~~~~~~~~~~~~~l~~l 263 (465)
|+||.||+.+... +. ... ....+.+.+..+.+ ...+-+.+|.... .+....+...++... +.. .
T Consensus 118 VlsceN~~~ng~~L~~~V~~~~~~~~~~wi~~~~~f~-~t~VDrI~P~~~~~d~~~v~~E~f~~wviE~~-~~~----~- 190 (381)
T PRK02318 118 IIACENMIRGTSFLKKHVLKALSEDEKAWLEEHVGFV-DSAVDRIVPAQKNEDPLDVTVEPFSEWIVDKT-QFK----G- 190 (381)
T ss_pred EEecCChhhHHHHHHHHHHHhCCHHHHHHHHhcCCCC-CcHHhcCCCCCCccCCcccccccceEEEEecc-ccc----C-
Confidence 8999999987520 00 000 00011111222222 1123445552100 000011111111110 000 0
Q ss_pred HcCCCCeEEecCChHHHHHHHHHHHHHHHHH----Hhhhccc-----CCCcchHHHHHHHHHHHHHHHHH-HhCCCc
Q 012349 264 LRRPHFTVWDNGDLVTHEVMGGLKNVYAIGA----GMVAALT-----NESATSKSVYFAHCTSEMVFITH-LLAEEP 330 (465)
Q Consensus 264 l~~~g~~v~~s~Di~gve~~galKNviAia~----Gi~~gl~-----~g~~n~~a~li~~~~~E~~~l~~-a~G~~~ 330 (465)
..-+...+.+++|+...+|.|...|-..-++ |...|.. ..++.. ..++...+.|+..++. +.|.++
T Consensus 191 ~~p~~~~v~~~~dv~~~~~~Kl~~ln~~ha~~A~~g~l~G~~tv~ea~~d~~~-~~~v~~l~~E~~~v~~~~~g~~~ 266 (381)
T PRK02318 191 ALPKIKGMEYVDNLMPFIERKLFTVNTGHATTAYLGYLKGYKTIREAILDPSI-RAVVKGALEESGAVLIKKYGFDK 266 (381)
T ss_pred CCCCCCCcEEccCccHHHHHHHHhccHHHHHHHHHHHHcCcchHHHHHcCHHH-HHHHHHHHHHHHhhcCCcCCcCH
Confidence 0001126888999999999998765533333 3333332 112333 3688889999888874 456543
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.5e-07 Score=99.19 Aligned_cols=156 Identities=13% Similarity=0.171 Sum_probs=99.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+.|||+|||+|.||..+|..|.+. | ++|.+|+|+... +. ... +
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~---------a~~--------------~------- 410 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQ-G-----HTVLAYSRSDYS-DE---------AQK--------------L------- 410 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC-c-----CEEEEEECChHH-HH---------HHH--------------c-------
Confidence 458999999999999999999987 7 899999998531 11 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCcchHHHHHHHHHH-hhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~-~aDiVIlaVps~~l~~vl~~l~~-~l~~~~~~~ivIs~~kG 199 (465)
++...+++++++. .+|+||+|||...+.++++++.. .+++ +++++.++.+
T Consensus 411 -------------------------Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~~lk~---g~ivvDv~Sv 462 (667)
T PLN02712 411 -------------------------GVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQRLKR---STLFVDVLSV 462 (667)
T ss_pred -------------------------CCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHhcCCC---CcEEEECCCc
Confidence 1234466777664 58999999999999999999875 4555 6788888533
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc-c---CceE---EEEeCC---hhHHHHHHHHHcCCCC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN-K---EYAN---ARICGA---EKWRKPLAKFLRRPHF 269 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~-g---~~t~---~~~~~~---~~~~~~l~~ll~~~g~ 269 (465)
=.. +.+.+.+.++.. .. .+...|.+..+... | .+.. ..+..+ .+.++.+.++|...|-
T Consensus 463 K~~----------~~~~~~~~l~~~-~~-~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa 530 (667)
T PLN02712 463 KEF----------PRNLFLQHLPQD-FD-ILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGC 530 (667)
T ss_pred cHH----------HHHHHHHhccCC-Cc-eEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCC
Confidence 111 124455555421 12 34466777666541 2 1100 112222 2345666788888887
Q ss_pred eEEec
Q 012349 270 TVWDN 274 (465)
Q Consensus 270 ~v~~s 274 (465)
+++..
T Consensus 531 ~vv~m 535 (667)
T PLN02712 531 RMVEM 535 (667)
T ss_pred EEEEe
Confidence 76654
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-05 Score=81.51 Aligned_cols=222 Identities=20% Similarity=0.241 Sum_probs=130.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
++|+|||.|+||.++|..|... | ++|.+|+|.....+. ...
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~-G-----~~ViV~~r~~~s~~~--------------------------A~~------- 57 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDS-G-----VEVVVGVRPGKSFEV--------------------------AKA------- 57 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHC-c-----CEEEEEECcchhhHH--------------------------HHH-------
Confidence 6899999999999999999988 7 899999875321110 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHH-HHHHhhhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
....+ .+++++++.||+|++++|....+.++. .+.+.+++ ++ ++..+-|+..
T Consensus 58 ----------------------~G~~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~---Ga-iL~f~hgfni 110 (335)
T PRK13403 58 ----------------------DGFEV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLRE---GQ-MLLFSHGFNI 110 (335)
T ss_pred ----------------------cCCEE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCC---CC-EEEECCCcce
Confidence 01222 368889999999999999877778874 57777776 45 5667888875
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEE--EeCCchhh--h--hhccCceEEEEeCC-----hhHHHHHHHHHcCC----
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILY--LGGPNIAS--E--IYNKEYANARICGA-----EKWRKPLAKFLRRP---- 267 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~v--lsGP~~a~--e--v~~g~~t~~~~~~~-----~~~~~~l~~ll~~~---- 267 (465)
. .....+.....+.. =-||++.. + -+.|.|+.+.+-.| .+.+...+...-+.
T Consensus 111 ~-------------~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~iG~~ragv 177 (335)
T PRK13403 111 H-------------FGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKGVGCTRAGV 177 (335)
T ss_pred e-------------cCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHHcCCCceeE
Confidence 4 11222211122221 14566533 1 22455766544222 12333333333322
Q ss_pred ---CCeEEecCChHH--HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhh
Q 012349 268 ---HFTVWDNGDLVT--HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTY 342 (465)
Q Consensus 268 ---g~~v~~s~Di~g--ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~ 342 (465)
.|+-.+.+|+.| .-+||.+--.+-.+.-.+-..+|. +. .++ -.++.|+..+...+.. -|+..+.
T Consensus 178 ~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~-pe--~Ay-fe~~he~kli~dli~e-------~G~~~m~ 246 (335)
T PRK13403 178 IETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYR-PE--IAY-FECLHELKLIVDLMYE-------GGLTNMR 246 (335)
T ss_pred EecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCC-HH--HHH-HHHHHHHHHHHHHHHH-------ccHHHHH
Confidence 344556788888 445777766665555555556663 33 133 3678898877765432 1344444
Q ss_pred hcccCchhHHHHHHH
Q 012349 343 VTLLKGRNAWYGQEL 357 (465)
Q Consensus 343 ~T~~~sRN~~~G~~l 357 (465)
-.| |-...||..+
T Consensus 247 ~~~--S~taeyG~~~ 259 (335)
T PRK13403 247 HSI--SDTAEFGDYV 259 (335)
T ss_pred Hhh--CcHHhcCCcc
Confidence 433 4455566433
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=96.91 Aligned_cols=157 Identities=13% Similarity=0.179 Sum_probs=97.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|.||..+|..|.+. | ++|..|+|+... +. ... +
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~-~~---------A~~--------------~------- 93 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ-G-----HTVLAHSRSDHS-LA---------ARS--------------L------- 93 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHH-HH---------HHH--------------c-------
Confidence 458999999999999999999988 7 899999997431 10 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCcchHHHHHHHHH-HhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEIS-RYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIlaVps~~l~~vl~~l~-~~l~~~~~~~ivIs~~kG 199 (465)
++...+++++++ .++|+||+|||.+.+.++++++. +++++ +++|+.++ +
T Consensus 94 -------------------------Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~~l~~---g~iVvDv~-S 144 (667)
T PLN02712 94 -------------------------GVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQRLKR---NTLFVDVL-S 144 (667)
T ss_pred -------------------------CCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhhcCCC---CeEEEECC-C
Confidence 223455666644 56999999999999999999986 56665 67777774 2
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhh----hccCceEEE--EeCCh----hHHHHHHHHHcCCCC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI----YNKEYANAR--ICGAE----KWRKPLAKFLRRPHF 269 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev----~~g~~t~~~--~~~~~----~~~~~l~~ll~~~g~ 269 (465)
+- ..+.+.+.+.++.. .. .+-.-|.+..|. ..+....+. +..++ +.++.+.++|...|-
T Consensus 145 vK---------~~~~~~l~~~l~~~-~~-~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa 213 (667)
T PLN02712 145 VK---------EFAKNLLLDYLPED-FD-IICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGC 213 (667)
T ss_pred Cc---------HHHHHHHHHhcCCC-Ce-EEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCC
Confidence 21 11234455555421 11 233344444432 223321111 11222 245667788988888
Q ss_pred eEEecC
Q 012349 270 TVWDNG 275 (465)
Q Consensus 270 ~v~~s~ 275 (465)
++...+
T Consensus 214 ~v~~ms 219 (667)
T PLN02712 214 KMVEMS 219 (667)
T ss_pred EEEEeC
Confidence 876653
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-06 Score=89.05 Aligned_cols=142 Identities=11% Similarity=0.091 Sum_probs=89.5
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.++|+|||. |.||..+|..|.+..| ++|+.|++..+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~-----~~V~g~D~~d~-------------------------------------- 40 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQ-----LEVIGHDPADP-------------------------------------- 40 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCC-----CEEEEEcCCcc--------------------------------------
Confidence 479999999 9999999999986423 67888876421
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh---hhccCCCCEEEEeec
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY---WKERITVPVIISLAK 198 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~---l~~~~~~~ivIs~~k 198 (465)
...++++++.+||+||+|||...+.++++++.++ +++ +++|.-++
T Consensus 41 ----------------------------~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~---~~iVtDVg- 88 (370)
T PRK08818 41 ----------------------------GSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAA---GQLWLDVT- 88 (370)
T ss_pred ----------------------------ccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCC---CeEEEECC-
Confidence 0123456678999999999999999999999986 565 56555333
Q ss_pred cccccccccccCCCHHHHHHhHhCCC-----CccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEe
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVP-----IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~-----~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
++ |. +.++...+.. .+| +.||... ...++.+..++.....+..+.++++++..|-++..
T Consensus 89 Sv----------K~--~i~~~~~~~~~~fVG~HP---MaG~E~s-~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~ 152 (370)
T PRK08818 89 SI----------KQ--APVAAMLASQAEVVGLHP---MTAPPKS-PTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVY 152 (370)
T ss_pred CC----------cH--HHHHHHHhcCCCEEeeCC---CCCCCCC-cccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 11 10 1222222211 122 2344322 23355544333333344467788999988877755
Q ss_pred cC
Q 012349 274 NG 275 (465)
Q Consensus 274 s~ 275 (465)
.+
T Consensus 153 ~~ 154 (370)
T PRK08818 153 AT 154 (370)
T ss_pred cC
Confidence 43
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.2e-06 Score=84.59 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=69.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
||||+|||+|.||+.+|..++.. | . +|.+++++++.++. .. ..-.+ ......
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~-~-----~~ev~L~D~~~~~~~~---~~----~dl~~---------~~~~~~----- 54 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK-E-----LGDVVLFDIVEGVPQG---KA----LDIAE---------AAPVEG----- 54 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEECCCchhHH---HH----HHHHh---------hhhhcC-----
Confidence 48999999999999999999987 6 4 89999998865432 00 00000 000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------chHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps--------------~~l~~vl~~l~~~l~ 185 (465)
. ...++.++|.+ ++.+||+||+++ |. ..++++++++.++.+
T Consensus 55 ----~------------------~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~ 111 (307)
T PRK06223 55 ----F------------------DTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAP 111 (307)
T ss_pred ----C------------------CcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 0 01355667774 589999999986 33 346777777777664
Q ss_pred ccCCCCEEEEeecccc
Q 012349 186 ERITVPVIISLAKGVE 201 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~ 201 (465)
+.++|..+|-.+
T Consensus 112 ----~~~viv~tNP~d 123 (307)
T PRK06223 112 ----DAIVIVVTNPVD 123 (307)
T ss_pred ----CeEEEEecCcHH
Confidence 467777887654
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=88.47 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=70.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-|+|+|||+|.||.++|..|... | ++|..|++++.... .
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~-G-----~~V~~~d~~~~~~~----------------------------~------ 184 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGF-G-----ATITAYDAYPNKDL----------------------------D------ 184 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCChhHhh----------------------------h------
Confidence 347999999999999999999877 7 89999998763110 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-HHH-HHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKE-VFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-l~~-vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+..+.++++++++||+|++++|... +.. +.+.+.+.+++ ++++|+++.|
T Consensus 185 -------------------------~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~---gavlIN~aRG 236 (330)
T PRK12480 185 -------------------------FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKK---GAILVNAARG 236 (330)
T ss_pred -------------------------hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCC---CcEEEEcCCc
Confidence 01123567888999999999999763 333 34556666776 7899999999
Q ss_pred cccc
Q 012349 200 VEAE 203 (465)
Q Consensus 200 i~~~ 203 (465)
-..+
T Consensus 237 ~~vd 240 (330)
T PRK12480 237 AVIN 240 (330)
T ss_pred cccC
Confidence 6654
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.6e-06 Score=83.67 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=98.9
Q ss_pred ceEEEECccH--------------------HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhh
Q 012349 44 LRIVGVGAGA--------------------WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103 (465)
Q Consensus 44 mkIaIIGaGa--------------------mGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~ 103 (465)
|||+|.|+|+ -|.+||..|+++ | |+|++|+|+++.++.- + ..
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA-G-----heV~V~Drnrsa~e~e---~----~e----- 62 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA-G-----HDVVLAEPNREFMSDD---L----WK----- 62 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC-C-----CEEEEEeCChhhhhhh---h----hH-----
Confidence 7899999986 378999999998 8 9999999987543210 0 00
Q ss_pred HHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHHHHH
Q 012349 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISR 182 (465)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~l~~ 182 (465)
.+.. .+..+++++.++++++|+||+++|.. +.+++++.+.+
T Consensus 63 ---------~Lae-----------------------------aGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 63 ---------KVED-----------------------------AGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred ---------HHHH-----------------------------CCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence 0100 03445677888999999999999966 57888888887
Q ss_pred hhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHh--CCC------CccEEEEeCCchhhhhhccCceEEEEeCCh
Q 012349 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRAT--GVP------IENILYLGGPNIASEIYNKEYANARICGAE 254 (465)
Q Consensus 183 ~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~l--g~~------~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~ 254 (465)
.+++ ++++|.++ .+++.. +...+++.+ ++. .+|.+|=..|++-.-+..|......--.++
T Consensus 105 ~L~~---GaIVID~S-TIsP~t--------~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~e 172 (341)
T TIGR01724 105 HVPE---NAVICNTC-TVSPVV--------LYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATE 172 (341)
T ss_pred cCCC---CCEEEECC-CCCHHH--------HHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCCH
Confidence 7776 67666554 444431 223333322 211 122222122222211222221111111356
Q ss_pred hHHHHHHHHHcCCCCeEEe-cCChHH
Q 012349 255 KWRKPLAKFLRRPHFTVWD-NGDLVT 279 (465)
Q Consensus 255 ~~~~~l~~ll~~~g~~v~~-s~Di~g 279 (465)
+..+++.++-++.+-..|. ..|+++
T Consensus 173 e~i~~~~el~~~~~~~~~~~pa~l~~ 198 (341)
T TIGR01724 173 EQISKCVELAKSTGKKAYVVPADVTS 198 (341)
T ss_pred HHHHHHHHHHHHhCCCeeecchhhcc
Confidence 7788888888887766554 456655
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-07 Score=90.45 Aligned_cols=127 Identities=23% Similarity=0.358 Sum_probs=84.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
..++.|+|||+|-||+.||+..+.. | ++|.+++++++.+.+..+ . |.+. ++|.-+. .....
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~s-g-----~~V~l~d~~~~aL~~A~~-~----I~~s---l~rvakK--k~~~~--- 69 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATS-G-----LNVWLVDANEDALSRATK-A----ISSS---LKRVAKK--KKADD--- 69 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhc-C-----CceEEecCCHHHHHHHHH-H----HHHH---HHHHHhh--cccCC---
Confidence 3457899999999999999999998 8 899999999987776432 1 2211 1111000 00000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc--chHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--TETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps--~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
+...+|++.+ .+..++.++|..+++.+||+||.|+-. +..+.++++|....++ ++++.+.+.
T Consensus 70 ----~~~~~e~v~~---------~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~---~~il~tNTS 133 (298)
T KOG2304|consen 70 ----PVALEEFVDD---------TLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKS---STILATNTS 133 (298)
T ss_pred ----hhhHHHHHHH---------HHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhccc---ceEEeeccc
Confidence 0001122222 123577889999999999999999854 4677889999888776 677777776
Q ss_pred cccc
Q 012349 199 GVEA 202 (465)
Q Consensus 199 Gi~~ 202 (465)
.+..
T Consensus 134 Sl~l 137 (298)
T KOG2304|consen 134 SLSL 137 (298)
T ss_pred ceeH
Confidence 6544
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.9e-06 Score=82.55 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=69.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+|.||+.+|..++.. | + +|.+++++++..+. +. .. .+.+...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-g-----~~~VvlvDi~~~l~~g---~a----~d-------------~~~~~~~---- 51 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-E-----LADLVLLDVVEGIPQG---KA----LD-------------MYEASPV---- 51 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-C-----CCeEEEEeCCCChhHH---HH----Hh-------------hhhhhhc----
Confidence 7999999999999999999987 6 4 79999997652221 00 00 0111100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------chHHHHHHHHHHhhhc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKE 186 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------------~~l~~vl~~l~~~l~~ 186 (465)
. .. ...++.++|.++ +.+||+||+++.. ..+++++++|.++.+
T Consensus 52 ~-~~------------------~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p- 110 (305)
T TIGR01763 52 G-GF------------------DTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP- 110 (305)
T ss_pred c-CC------------------CcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 0 00 024677788876 7999999999973 245566666766643
Q ss_pred cCCCCEEEEeecccc
Q 012349 187 RITVPVIISLAKGVE 201 (465)
Q Consensus 187 ~~~~~ivIs~~kGi~ 201 (465)
+.++|.++|-.+
T Consensus 111 ---~~~iIv~tNP~d 122 (305)
T TIGR01763 111 ---NPIIVVVSNPLD 122 (305)
T ss_pred ---CeEEEEecCcHH
Confidence 568888888654
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.8e-05 Score=84.64 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCCcccchhhhh
Q 012349 54 WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILK 133 (465)
Q Consensus 54 mGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~ 133 (465)
||..||..|+++ | ++|.+|+|+++.++.+ .+..+ ++
T Consensus 1 MG~~mA~nL~~~-G-----~~V~v~nrt~~~~~~l--------~~~~g-------------~~----------------- 36 (459)
T PRK09287 1 MGKNLALNIASH-G-----YTVAVYNRTPEKTDEF--------LAEEG-------------KG----------------- 36 (459)
T ss_pred CcHHHHHHHHhC-C-----CeEEEECCCHHHHHHH--------HHhhC-------------CC-----------------
Confidence 899999999999 8 9999999998766541 11000 00
Q ss_pred ccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecccccccccccc
Q 012349 134 DGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPR 209 (465)
Q Consensus 134 ~~~~~~~~~~~~~~i~~t~dl~eal~~---aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~ 209 (465)
.++....+++++++. +|+||++||.. .++++++.+.+++.+ +.++|-+++.....+
T Consensus 37 ------------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~~---GdiiID~gn~~~~~t----- 96 (459)
T PRK09287 37 ------------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLEK---GDIIIDGGNSNYKDT----- 96 (459)
T ss_pred ------------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCCC---CCEEEECCCCCHHHH-----
Confidence 024556778887764 89999999965 789999999998887 678888876654432
Q ss_pred CCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCe
Q 012349 210 IITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 210 ~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~ 270 (465)
....+.+++ .|.......|..||.-|. .| + .++++++++..+.++.+|+..+-+
T Consensus 97 -~~~~~~l~~-~Gi~fvdapVSGG~~gA~---~G-~-siM~GG~~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 97 -IRREKELAE-KGIHFIGMGVSGGEEGAL---HG-P-SIMPGGQKEAYELVAPILEKIAAK 150 (459)
T ss_pred -HHHHHHHHh-cCCeEEecCCCCCHHHHh---cC-C-EEEEeCCHHHHHHHHHHHHHHhhh
Confidence 111122222 232111122344443333 34 3 457888888888888888865433
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=81.87 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=33.8
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.+++||+|||+|.||+++|..++.. |. .+|.|+|++++.+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~-gl----~~i~LvDi~~~~~ 43 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLK-NL----GDVVLFDIVKNIP 43 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEeCCCchh
Confidence 3558999999999999999999887 62 3699999998754
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.8e-05 Score=76.02 Aligned_cols=112 Identities=20% Similarity=0.183 Sum_probs=72.1
Q ss_pred CeEEecC--HHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhC
Q 012349 147 PLKVVTN--LQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222 (465)
Q Consensus 147 ~i~~t~d--l~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg 222 (465)
+++++++ ..+++++||+||.|||.. ....++.++.+.+++ ++++.|.+.++... .|.+.+.
T Consensus 64 ~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~---~~ilaSntS~~~~~------------~la~~~~ 128 (314)
T PRK08269 64 RIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDA---DAIIASTTSTFLVT------------DLQRHVA 128 (314)
T ss_pred CeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCC---CcEEEEccccCCHH------------HHHhhcC
Confidence 5777654 667889999999999975 567788889888887 78887777666553 3555454
Q ss_pred CCCccEEE--EeCCchhhhhhccCceEEEE--eCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 223 VPIENILY--LGGPNIASEIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 223 ~~~~~i~v--lsGP~~a~ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
.+ .++.. ...|-+.. ....++. ..+++..+.+..++...|..+....|.-|
T Consensus 129 ~p-~r~~g~Hf~~Pp~~~-----~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~G 183 (314)
T PRK08269 129 HP-ERFLNAHWLNPAYLM-----PLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPG 183 (314)
T ss_pred Cc-ccEEEEecCCccccC-----ceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 33 22211 11222111 1111221 23667788899999988888777777655
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-05 Score=79.60 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=70.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+.+||+|||+|.+|..+|..++.. |. .++.|+|++++.++. +. +.-.+ .....
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~-~~----~~l~L~Di~~~~~~g---~~----lDl~~-----------~~~~~---- 56 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQK-NL----GDVVLYDVIKGVPQG---KA----LDLKH-----------FSTLV---- 56 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHC-CC----CeEEEEECCCccchh---HH----HHHhh-----------hcccc----
Confidence 457999999999999999999887 62 479999998865432 10 11110 00000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------chHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps--------------~~l~~vl~~l~~~l~ 185 (465)
+. ...+..++|.+ ++.+||+||++. |. ..++++++++.++.+
T Consensus 57 ~~---------------------~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p 114 (319)
T PTZ00117 57 GS---------------------NINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCP 114 (319)
T ss_pred CC---------------------CeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 00 01355567876 689999999999 33 236677777777754
Q ss_pred ccCCCCEEEEeecccc
Q 012349 186 ERITVPVIISLAKGVE 201 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~ 201 (465)
+.+++.++|-.+
T Consensus 115 ----~a~vivvsNP~d 126 (319)
T PTZ00117 115 ----NAFVICVTNPLD 126 (319)
T ss_pred ----CeEEEEecChHH
Confidence 466777777553
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.1e-05 Score=82.88 Aligned_cols=96 Identities=20% Similarity=0.320 Sum_probs=67.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-|+|+|||+|.||.++|..|++..| .+|..|+++.... .+.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g-----~~V~~~d~~~~~~----------------------------~~~----- 186 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYG-----SDVVAYDPFPNAK----------------------------AAT----- 186 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCccHh----------------------------HHh-----
Confidence 34799999999999999999954324 6777777654210 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHH--HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF--EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl--~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+...++++++++++|+|++++|.......+ +.+.+.+++ ++++|.+++|
T Consensus 187 -------------------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~---gailIN~sRG 238 (332)
T PRK08605 187 -------------------------YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKK---GAVFVNCARG 238 (332)
T ss_pred -------------------------hccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCC---CcEEEECCCC
Confidence 1123457888899999999999976543333 334555666 7899999999
Q ss_pred cccc
Q 012349 200 VEAE 203 (465)
Q Consensus 200 i~~~ 203 (465)
...+
T Consensus 239 ~~vd 242 (332)
T PRK08605 239 SLVD 242 (332)
T ss_pred cccC
Confidence 7665
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.4e-06 Score=88.46 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=56.7
Q ss_pred ceEEEECccHHHHHHHH--HHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 44 LRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 44 mkIaIIGaGamGsalA~--~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+||+|||+|+||.+++. .++.... + .+++|.||+++++.++.+... ++ ++++..
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~-~-~g~eV~L~Did~e~l~~~~~~-----~~-------------~~~~~~---- 56 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPE-L-SGSTIALMDIDEERLETVEIL-----AK-------------KIVEEL---- 56 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCC-C-CCCEEEEECCCHHHHHHHHHH-----HH-------------HHHHhc----
Confidence 58999999999999776 3432100 0 127999999999776642211 11 112111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHH
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKE 175 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~ 175 (465)
.. ..++.+|+|+++++.+||+||+++++...+.
T Consensus 57 ---~~------------------~~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~ 89 (423)
T cd05297 57 ---GA------------------PLKIEATTDRREALDGADFVINTIQVGGHEY 89 (423)
T ss_pred ---CC------------------CeEEEEeCCHHHHhcCCCEEEEeeEecCccc
Confidence 00 0157789999999999999999999654433
|
linked to 3D####ucture |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.1e-05 Score=69.80 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=75.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+ |.+|+++|..|... +.. .++.|++++++.++... ++-. +....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-~l~---~ei~L~D~~~~~~~g~a-------~Dl~------------~~~~~----- 52 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-GLA---DEIVLIDINEDKAEGEA-------LDLS------------HASAP----- 52 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-TTS---SEEEEEESSHHHHHHHH-------HHHH------------HHHHG-----
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CceEEeccCcccceeee-------hhhh------------hhhhh-----
Confidence 79999999 99999999999988 632 57999999976544211 1100 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Ccc--------------hHHHHHHHHHHhhhc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYWKE 186 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps~--------------~l~~vl~~l~~~l~~ 186 (465)
. . .+..+..+..+++++||+||++. |.. .++++.+++.++.+
T Consensus 53 ~-~--------------------~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p- 110 (141)
T PF00056_consen 53 L-P--------------------SPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAP- 110 (141)
T ss_dssp S-T--------------------EEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHST-
T ss_pred c-c--------------------cccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCC-
Confidence 0 0 02344445556799999999987 221 35555566665543
Q ss_pred cCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 187 ~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+++.++|-++. +..++++..+.+..+
T Consensus 111 ---~~~vivvtNPvd~----------~t~~~~~~s~~~~~k 138 (141)
T PF00056_consen 111 ---DAIVIVVTNPVDV----------MTYVAQKYSGFPPNK 138 (141)
T ss_dssp ---TSEEEE-SSSHHH----------HHHHHHHHHTSSGGG
T ss_pred ---ccEEEEeCCcHHH----------HHHHHHHhhCcCccc
Confidence 5788888876653 346677776654333
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.5e-05 Score=71.76 Aligned_cols=94 Identities=34% Similarity=0.449 Sum_probs=65.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch-hhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~-~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.++|+|||.|+.|.+.|..|.++ | .+|++-.|... ..++.+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS-G-----~~V~Vglr~~s~s~~~A~-------------------------------- 45 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS-G-----VNVIVGLREGSASWEKAK-------------------------------- 45 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC-C------EEEEEE-TTCHHHHHHH--------------------------------
T ss_pred CCEEEEECCChHHHHHHHHHHhC-C-----CCEEEEecCCCcCHHHHH--------------------------------
Confidence 36899999999999999999998 8 89998888764 222100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+| .+ ..+..|+++.+|+|++.+|.....++. ++|.|++++ ++ .+..+-|+
T Consensus 46 -----------~~G------------f~-v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~---G~-~L~fahGf 97 (165)
T PF07991_consen 46 -----------ADG------------FE-VMSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKP---GA-TLVFAHGF 97 (165)
T ss_dssp -----------HTT-------------E-CCEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-T---T--EEEESSSH
T ss_pred -----------HCC------------Ce-eccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCC---CC-EEEeCCcc
Confidence 011 22 235678899999999999999999998 889999997 55 45677777
Q ss_pred cc
Q 012349 201 EA 202 (465)
Q Consensus 201 ~~ 202 (465)
..
T Consensus 98 ni 99 (165)
T PF07991_consen 98 NI 99 (165)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00011 Score=74.22 Aligned_cols=102 Identities=17% Similarity=0.227 Sum_probs=65.0
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
|+|||+|.||..+|..++.. | . +|.++|++++..+. ..+ +.. + ..... ..
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~-----l~eV~L~Di~e~~~~g---~~~-dl~---~-----------~~~~~----~~- 51 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-E-----LGDVVLLDIVEGLPQG---KAL-DIS---Q-----------AAPIL----GS- 51 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-C-----CcEEEEEeCCCcHHHH---HHH-HHH---H-----------hhhhc----CC-
Confidence 68999999999999999987 6 4 89999999764321 100 000 0 00000 00
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------chHHHHHHHHHHhhhccC
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------------~~l~~vl~~l~~~l~~~~ 188 (465)
...+..++|.+ ++.+||+||+++-. ..++++++++.++.+
T Consensus 52 --------------------~~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p--- 107 (300)
T cd01339 52 --------------------DTKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAP--- 107 (300)
T ss_pred --------------------CeEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 01456667764 58999999997731 135667777777664
Q ss_pred CCCEEEEeecccc
Q 012349 189 TVPVIISLAKGVE 201 (465)
Q Consensus 189 ~~~ivIs~~kGi~ 201 (465)
+.++|..+|-.+
T Consensus 108 -~~~iIv~sNP~d 119 (300)
T cd01339 108 -NAIVIVVTNPLD 119 (300)
T ss_pred -CeEEEEecCcHH
Confidence 456677776543
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0002 Score=70.90 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=69.7
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 46 IaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
|+|||+ |.||..+|..|+.. |.+. ..+|.|+|++++.++....+ ++..- ....
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-~~~~-~~el~L~D~~~~~l~~~~~d-----l~~~~----------~~~~--------- 54 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-SVLL-AIELVLYDIDEEKLKGVAMD-----LQDAV----------EPLA--------- 54 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-CCCc-ceEEEEEeCCcccchHHHHH-----HHHhh----------hhcc---------
Confidence 689999 99999999999987 5211 15899999988665531111 11100 0000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------chHHHHHHHHHHhhhccC
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWKERI 188 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------------~~l~~vl~~l~~~l~~~~ 188 (465)
...+.+++|+.+++.+||+||++.-. ..++++++++.++.+
T Consensus 55 --------------------~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p--- 111 (263)
T cd00650 55 --------------------DIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSP--- 111 (263)
T ss_pred --------------------CcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 01567788888889999999996622 136666777776653
Q ss_pred CCCEEEEeecccc
Q 012349 189 TVPVIISLAKGVE 201 (465)
Q Consensus 189 ~~~ivIs~~kGi~ 201 (465)
+.+++..+|-.+
T Consensus 112 -~a~~i~~tNP~d 123 (263)
T cd00650 112 -DAWIIVVSNPVD 123 (263)
T ss_pred -CeEEEEecCcHH
Confidence 567777776554
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00034 Score=72.37 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=43.9
Q ss_pred eEeecchhHHHhHHHhhhhcCCCCCC-----ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 18 IHHTNGSLEERLDELRRLMGKAEGDP-----LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+|-.||-+. +..++--+|-+....| +||+|||+|.+|+++|..++.. +.. .++.|+|.+++.++
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~m~~~~~~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~LiDi~~~~~~ 76 (350)
T PLN02602 8 SSLGPGGLD-LSQAFFKPIHNSSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQ-DLA---DELALVDVNPDKLR 76 (350)
T ss_pred cccccchhh-hhhhhhhcccccccccccCCCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCCCchhh
Confidence 344666665 5554444333333312 6999999999999999999877 632 47999999886543
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=64.11 Aligned_cols=122 Identities=20% Similarity=0.176 Sum_probs=73.5
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
|||+|+|+ |.||..++..+.+..+ ++ |-.++++++.... +.+- .+.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~-----~~lv~~v~~~~~~~~g---~d~g------------------~~~~~---- 50 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPG-----FELVGAVDRKPSAKVG---KDVG------------------ELAGI---- 50 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTT-----EEEEEEEETTTSTTTT---SBCH------------------HHCTS----
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCC-----cEEEEEEecCCccccc---chhh------------------hhhCc----
Confidence 79999999 9999999999998524 55 4456666521110 0000 01110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
. ..++.+++|+++++..+|++|-++-+..+.+.++....+ +..+|+.+.|+.
T Consensus 51 ---~-------------------~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~------g~~~ViGTTG~~ 102 (124)
T PF01113_consen 51 ---G-------------------PLGVPVTDDLEELLEEADVVIDFTNPDAVYDNLEYALKH------GVPLVIGTTGFS 102 (124)
T ss_dssp ---S-------------------T-SSBEBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHHH------T-EEEEE-SSSH
T ss_pred ---C-------------------CcccccchhHHHhcccCCEEEEcCChHHhHHHHHHHHhC------CCCEEEECCCCC
Confidence 0 014667899999998999999999777776666665443 457888888997
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCch
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNI 236 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~ 236 (465)
.+.. +.+++.-. .+.++..|||
T Consensus 103 ~~~~---------~~l~~~a~----~~~vl~a~Nf 124 (124)
T PF01113_consen 103 DEQI---------DELEELAK----KIPVLIAPNF 124 (124)
T ss_dssp HHHH---------HHHHHHTT----TSEEEE-SSS
T ss_pred HHHH---------HHHHHHhc----cCCEEEeCCC
Confidence 6521 34554332 2467788886
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00022 Score=72.39 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=33.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+||+|||+|.+|+++|..|+.. |.. ++|.+++++++.++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~-g~~---~ei~l~D~~~~~~~ 39 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ-GIA---DELVLIDINEEKAE 39 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence 4899999999999999999987 631 48999999987654
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=76.91 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=52.3
Q ss_pred CceEEEECccHHHHHHHH--HHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~--~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
|+||+|||+|++|.+.+. .++...+ +. +.+|.|+|++++.++.... .++.. +...
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~-l~-~~evvLvDid~er~~~~~~-----l~~~~-------------~~~~--- 57 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPA-LR-DAEIALMDIDPERLEESEI-----VARKL-------------AESL--- 57 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCcc-CC-CCEEEEECCCHHHHHHHHH-----HHHHH-------------HHhc---
Confidence 479999999999977766 5542212 11 2589999999876653211 11110 1100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP 169 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp 169 (465)
+. ...+..|+|..+++.+||+||.++-
T Consensus 58 -~~---------------------~~~i~~ttD~~eal~dADfVv~ti~ 84 (431)
T PRK15076 58 -GA---------------------SAKITATTDRREALQGADYVINAIQ 84 (431)
T ss_pred -CC---------------------CeEEEEECCHHHHhCCCCEEeEeee
Confidence 00 0147788998899999999999873
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00014 Score=72.23 Aligned_cols=82 Identities=22% Similarity=0.243 Sum_probs=58.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
||||+|||+|.||..++..+.+. + . +.+ +.+|+++++..+.+ .+ ..
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~-~-~--~~elv~v~d~~~~~a~~~---------a~----------------~~---- 47 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG-R-I--NAELYAFYDRNLEKAENL---------AS----------------KT---- 47 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC-C-C--CeEEEEEECCCHHHHHHH---------HH----------------hc----
Confidence 47999999999999999998765 2 0 133 66788887543320 00 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHH
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~ 182 (465)
.....+|+++.+.++|+|++|+|++...+++.++..
T Consensus 48 -------------------------~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~al~ 83 (265)
T PRK13304 48 -------------------------GAKACLSIDELVEDVDLVVECASVNAVEEVVPKSLE 83 (265)
T ss_pred -------------------------CCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHHHH
Confidence 123456777777889999999999988888776654
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00025 Score=72.05 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=33.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|||+|||+|.+|+++|..|+.+ |.. ++|.+++++++.++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~-g~~---~ev~l~D~~~~~~~ 39 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR-GLA---SEIVLVDINKAKAE 39 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCC---CEEEEEECCchhhh
Confidence 6999999999999999999988 621 58999999876543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00031 Score=68.70 Aligned_cols=165 Identities=18% Similarity=0.131 Sum_probs=102.1
Q ss_pred CceEEEECccHH--------------------HHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhh
Q 012349 43 PLRIVGVGAGAW--------------------GSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102 (465)
Q Consensus 43 ~mkIaIIGaGam--------------------GsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~ 102 (465)
+|||+|.|+|+- |+.+|..+|++ | |+|.|.+.+.+..+. +
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA-G-----HDVVLaePn~d~~dd---~----------- 60 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA-G-----HDVVLAEPNRDIMDD---E----------- 60 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc-C-----CcEEeecCCccccCH---H-----------
Confidence 489999999862 77899999999 8 999999988764442 1
Q ss_pred hHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHHHH
Q 012349 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEIS 181 (465)
Q Consensus 103 ~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~l~ 181 (465)
+.+.++ | ..+++++|-.++++.+++.++.||-- .+-.+.+.|.
T Consensus 61 ----------~w~~ve---------------d-----------AGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~ 104 (340)
T COG4007 61 ----------HWKRVE---------------D-----------AGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIAREIL 104 (340)
T ss_pred ----------HHHHHH---------------h-----------cCcEEecCchhhhhcceEEEEecccchhhHHHHHHHH
Confidence 111111 1 25777777778899999999999976 8889999999
Q ss_pred HhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhH-------hCCC-CccEEEEeCCchhhhhhccCceEEEEeCC
Q 012349 182 RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRA-------TGVP-IENILYLGGPNIASEIYNKEYANARICGA 253 (465)
Q Consensus 182 ~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~-------lg~~-~~~i~vlsGP~~a~ev~~g~~t~~~~~~~ 253 (465)
+++++ +++| +.+=.+++- -+...++.. .|.. .+|.++=.-|++-.-+..|+.+...--..
T Consensus 105 ~hvpE---gAVi-cnTCT~sp~--------vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elAT 172 (340)
T COG4007 105 EHVPE---GAVI-CNTCTVSPV--------VLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELAT 172 (340)
T ss_pred hhCcC---CcEe-cccccCchh--------HHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeecc
Confidence 99987 5644 333233321 011112222 2211 12222212233322222233222211234
Q ss_pred hhHHHHHHHHHcCCCCeEEecC
Q 012349 254 EKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 254 ~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
++..+++.++.++.|..+|+.+
T Consensus 173 eEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 173 EEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred HHHHHHHHHHHHhcCCceEecC
Confidence 6788999999999998888753
|
|
| >PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00028 Score=61.74 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcccCC----CcchHHHHHHHHHHHHHHHHHHhCCCcchh--ccCchhhhhhcccCch
Q 012349 276 DLVTHEVMGGLKNVYAIGAGMVAALTNE----SATSKSVYFAHCTSEMVFITHLLAEEPEKL--AGPLLADTYVTLLKGR 349 (465)
Q Consensus 276 Di~gve~~galKNviAia~Gi~~gl~~g----~~n~~a~li~~~~~E~~~l~~a~G~~~~t~--~g~glgDl~~T~~~sR 349 (465)
|+.+..|.+.+.|....+...+.+..+| ++..+ .++...+.|+..++++.|.....- .. .+.++.... ...
T Consensus 1 di~~~~w~Kl~~n~~~n~l~al~~~~~g~l~~~~~~~-~~~~~l~~E~~~va~a~G~~l~~~~~~~-~~~~~~~~~-~~~ 77 (125)
T PF08546_consen 1 DIQRERWEKLIFNAAINPLTALTGCTNGELLENPEAR-ELIRALMREVIAVARALGIPLDPDDLEE-AIERLIRST-PDN 77 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHSHHHH-HHHHHHHHHHHHHHHHTTSS--HHHHHH-HHHHHHHCT-TTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHhChhHH-HHHHHHHHHHHHHHHHhhccCcHHHHHH-HHHHHHHhc-CCc
Confidence 7889999999999655555554444332 23333 789999999999999999753211 00 111111111 111
Q ss_pred hHHHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 350 NAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 350 N~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
--++-+++.+|+.+ .+|.+.. .++++++++|+ + +|.++++|++++.
T Consensus 78 ~~SM~~D~~~gr~t-----------Eid~i~G--~vv~~a~~~gv--------------~-~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 78 RSSMLQDIEAGRPT-----------EIDYING--YVVRLAKKHGV--------------P-TPVNETIYALVKA 123 (125)
T ss_dssp --HHHHHHHTTB-------------SHHHTHH--HHHHHHHHTT------------------HHHHHHHHHHHH
T ss_pred cccHHHHHHHcccc-----------cHHHHHH--HHHHHHHHHCC--------------C-CcHHHHHHHHHHH
Confidence 12344455555432 2333333 79999999995 6 8999999999863
|
1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B .... |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.4e-05 Score=70.53 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcC
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYG 67 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G 67 (465)
|||+|||+ |.||..++..|.++ |
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-G 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-C
Confidence 69999999 99999999999877 6
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0028 Score=63.61 Aligned_cols=200 Identities=26% Similarity=0.314 Sum_probs=117.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh-hhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~-~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+||+|||.|+=|.+=|.-|.++ | .+|++=-|.... +++. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDS-G-----lnViiGlr~g~~s~~kA--------~------------------------- 59 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDS-G-----LNVIIGLRKGSSSWKKA--------K------------------------- 59 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhc-C-----CcEEEEecCCchhHHHH--------H-------------------------
Confidence 6999999999999999999998 8 788776665432 1110 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHH-HHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.+ +.+ ..+.+||++.||+|++-+|.....++.+ +|.|.+++ +. .+..+-|+.
T Consensus 60 ----------~d------------Gf~-V~~v~ea~k~ADvim~L~PDe~q~~vy~~~I~p~Lk~---G~-aL~FaHGfN 112 (338)
T COG0059 60 ----------ED------------GFK-VYTVEEAAKRADVVMILLPDEQQKEVYEKEIAPNLKE---GA-ALGFAHGFN 112 (338)
T ss_pred ----------hc------------CCE-eecHHHHhhcCCEEEEeCchhhHHHHHHHHhhhhhcC---Cc-eEEeccccc
Confidence 01 222 2456789999999999999999999998 89999987 44 566777876
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccE--EEEeCCchhh--h--hhccCceEEEEeCC-----hhHHHHHHHHHc--C--
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENI--LYLGGPNIAS--E--IYNKEYANARICGA-----EKWRKPLAKFLR--R-- 266 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i--~vlsGP~~a~--e--v~~g~~t~~~~~~~-----~~~~~~l~~ll~--~-- 266 (465)
.-- ....+.....+ +.=-||++.. + -+.|.|+.+.+-.| .+.+...++..- +
T Consensus 113 ihf-------------~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~qD~sG~a~~~Ala~AkgiGg~RaG 179 (338)
T COG0059 113 IHF-------------GLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQDASGKALDIALAYAKGIGGTRAG 179 (338)
T ss_pred eec-------------ceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEeCCCchHHHHHHHHHHhcCCCccc
Confidence 531 11111111111 1124666533 1 22455776544222 122333333332 1
Q ss_pred ---CCCeEEecCChHHHH--HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHh
Q 012349 267 ---PHFTVWDNGDLVTHE--VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLL 326 (465)
Q Consensus 267 ---~g~~v~~s~Di~gve--~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~ 326 (465)
..|+-.+.+|+.|-+ +||-+--.+-.+.-.+-..+|. |. .+++ .++.|+..+...+
T Consensus 180 vieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~-PE--~Ayf-E~lhE~klIvdLi 240 (338)
T COG0059 180 VIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQ-PE--LAYF-ECLHELKLIVDLI 240 (338)
T ss_pred eEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCC-HH--HHHH-HHHHHHHHHHHHH
Confidence 235666678999843 4665554443333334444442 32 1333 5666777776654
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0016 Score=69.02 Aligned_cols=100 Identities=26% Similarity=0.338 Sum_probs=69.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
++|+|||.|+.|.+-|..|... | ++|++--|.. .++. ++ ...+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdS-G-----vnVvvglr~~-~id~----------~~------------~s~~kA------ 81 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKE-AIAE----------KR------------ASWRKA------ 81 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccc-c-----ceeEEecccc-cccc----------cc------------chHHHH------
Confidence 7999999999999988888877 7 7887655543 1110 00 000000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
..+| ..+ .+.++++..||+|++.+|...-..+.+++.+++++ +. .+..+-|+...
T Consensus 82 --------~~dG------------F~v-~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~---Ga-~L~fsHGFni~ 136 (487)
T PRK05225 82 --------TENG------------FKV-GTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQ---GA-ALGYSHGFNIV 136 (487)
T ss_pred --------HhcC------------Ccc-CCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCC---CC-EEEecCCceee
Confidence 0012 222 45788899999999999988888888999999987 44 56777787653
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00083 Score=68.50 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=33.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+||+|||+|.+|+++|..|+.. |.. .++.|+|.+++.++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~-~~~---~el~LiD~~~~~~~ 42 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAK-GLA---DELVLVDVVEDKLK 42 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHH
Confidence 47999999999999999999877 632 57999999876443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00041 Score=72.64 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=67.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++|+|||.|+||..+|..|..- | .+|..|+|.....+. ...
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G-----~~V~~~dr~~~~~~~--------------------------~~~------ 233 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-D-----VKLHYTDRHRLPEEV--------------------------EQE------ 233 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCchhh--------------------------Hhh------
Confidence 47999999999999999999866 6 789999987521110 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHH-HHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE-EISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.++....+++++++.||+|++++| ...++.++. +....+++ ++++|.++-|=
T Consensus 234 -----------------------~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 287 (385)
T PRK07574 234 -----------------------LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKR---GSYLVNTARGK 287 (385)
T ss_pred -----------------------cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCC---CcEEEECCCCc
Confidence 022333578899999999999999 456777763 34445666 78899888774
Q ss_pred c
Q 012349 201 E 201 (465)
Q Consensus 201 ~ 201 (465)
.
T Consensus 288 i 288 (385)
T PRK07574 288 I 288 (385)
T ss_pred h
Confidence 3
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00072 Score=58.11 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=63.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+||+|||+|.||......+.+. . ++.++ -+++++++..+.. .++ .
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~-~---~~~~v~~v~d~~~~~~~~~--------~~~--------------~-------- 46 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS-S---PDFEVVAVCDPDPERAEAF--------AEK--------------Y-------- 46 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT-T---TTEEEEEEECSSHHHHHHH--------HHH--------------T--------
T ss_pred CEEEEECCcHHHHHHHHHHHhc-C---CCcEEEEEEeCCHHHHHHH--------HHH--------------h--------
Confidence 5899999999999999888766 2 12454 4788887543321 000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
++...+|.++.+. +.|+|++++|+....+.+...... +. -|.+-|-+
T Consensus 47 ------------------------~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~------g~-~v~~EKP~ 95 (120)
T PF01408_consen 47 ------------------------GIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEA------GK-HVLVEKPL 95 (120)
T ss_dssp ------------------------TSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHT------TS-EEEEESSS
T ss_pred ------------------------cccchhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHc------CC-EEEEEcCC
Confidence 2335677888776 789999999999888887776542 23 34577766
Q ss_pred cc
Q 012349 201 EA 202 (465)
Q Consensus 201 ~~ 202 (465)
..
T Consensus 96 ~~ 97 (120)
T PF01408_consen 96 AL 97 (120)
T ss_dssp SS
T ss_pred cC
Confidence 44
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00039 Score=71.47 Aligned_cols=94 Identities=22% Similarity=0.254 Sum_probs=67.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|++|..+|..|... | .+|..|+|+..... ...
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~---------------------------~~~----- 190 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGF-G-----MRILYYSRTRKPEA---------------------------EKE----- 190 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCChhh---------------------------HHH-----
Confidence 347999999999999999999866 6 78999998753110 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
. ... ..+++++++.||+|++++|. ..++.++ ++....+++ ++++|.++-|
T Consensus 191 ----~--------------------~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~---ga~lIN~aRg 242 (333)
T PRK13243 191 ----L--------------------GAE-YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKP---TAILVNTARG 242 (333)
T ss_pred ----c--------------------CCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECcCc
Confidence 0 122 24678889999999999995 4566665 345555666 6888888877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
-.
T Consensus 243 ~~ 244 (333)
T PRK13243 243 KV 244 (333)
T ss_pred hh
Confidence 43
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00072 Score=65.73 Aligned_cols=142 Identities=19% Similarity=0.215 Sum_probs=90.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|+|.+||.|.||..+...|.+. | |+|..|+++++.++++..+.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~-g-----hdvV~yD~n~~av~~~~~~g------------------------------- 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG-G-----HDVVGYDVNQTAVEELKDEG------------------------------- 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC-C-----CeEEEEcCCHHHHHHHHhcC-------------------------------
Confidence 7899999999999999999998 7 99999999998776532111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHH---HhcCCCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~e---al~~aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+..+++++ -+...-.|.+-||.- .+.++++++++.+.+ +.+||---|.
T Consensus 44 ------------------------a~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~---GDivIDGGNS 96 (300)
T COG1023 44 ------------------------ATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSA---GDIVIDGGNS 96 (300)
T ss_pred ------------------------CccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCC---CCEEEECCcc
Confidence 011122222 245567899999987 899999999999987 5667654433
Q ss_pred ccccccccccCCCHHHHHHh---H--hCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcC
Q 012349 200 VEAELEAVPRIITPTQMINR---A--TGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRR 266 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e---~--lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~ 266 (465)
--. +.+++ . -|.....+..-.|+-=++ +| + ..+++++++..+.+..+|..
T Consensus 97 ~y~------------Ds~rr~~~l~~kgi~flD~GTSGG~~G~~---~G-~-~lMiGG~~~a~~~~~pif~~ 151 (300)
T COG1023 97 NYK------------DSLRRAKLLAEKGIHFLDVGTSGGVWGAE---RG-Y-CLMIGGDEEAVERLEPIFKA 151 (300)
T ss_pred chH------------HHHHHHHHHHhcCCeEEeccCCCCchhhh---cC-c-eEEecCcHHHHHHHHHHHHh
Confidence 222 12221 1 121111122222221111 22 2 24678888888899999875
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00071 Score=68.97 Aligned_cols=94 Identities=27% Similarity=0.386 Sum_probs=67.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.++|+|||.|+||..+|..|..- | .+|..|++..... ++..
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af-G-----~~V~~~~~~~~~~-----------------------------~~~~---- 176 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW-G-----FPLRCWSRSRKSW-----------------------------PGVQ---- 176 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCCCCC-----------------------------CCce----
Confidence 37999999999999999999866 7 8999998865311 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi 200 (465)
......++++++++||+|++++|. ..++.++. +....+++ ++++|.+.-|=
T Consensus 177 ------------------------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 229 (312)
T PRK15469 177 ------------------------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPD---GAYLLNLARGV 229 (312)
T ss_pred ------------------------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCcc
Confidence 001124678889999999999994 46676664 24444565 68899988884
Q ss_pred cc
Q 012349 201 EA 202 (465)
Q Consensus 201 ~~ 202 (465)
..
T Consensus 230 vV 231 (312)
T PRK15469 230 HV 231 (312)
T ss_pred cc
Confidence 33
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00068 Score=68.96 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=68.5
Q ss_pred hHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhh
Q 012349 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLI 108 (465)
Q Consensus 29 ~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~ 108 (465)
++..+..++.. ..++|+|||+|.||..++..|... | .++|++++|++++...+ .++
T Consensus 166 v~~a~~~~~~l--~~~~V~ViGaG~iG~~~a~~L~~~-g----~~~V~v~~r~~~ra~~l--------a~~--------- 221 (311)
T cd05213 166 VELAEKIFGNL--KGKKVLVIGAGEMGELAAKHLAAK-G----VAEITIANRTYERAEEL--------AKE--------- 221 (311)
T ss_pred HHHHHHHhCCc--cCCEEEEECcHHHHHHHHHHHHHc-C----CCEEEEEeCCHHHHHHH--------HHH---------
Confidence 34455555543 448999999999999999999875 4 26899999987644321 000
Q ss_pred hcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccC
Q 012349 109 RRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERI 188 (465)
Q Consensus 109 ~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~ 188 (465)
+. . .....+++.+++.++|+||.|||+......++.+......
T Consensus 222 -----~g-------~-----------------------~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~-- 264 (311)
T cd05213 222 -----LG-------G-----------------------NAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSG-- 264 (311)
T ss_pred -----cC-------C-----------------------eEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCC--
Confidence 00 0 0111234566788999999999988775555554322211
Q ss_pred CCCEEEEeec
Q 012349 189 TVPVIISLAK 198 (465)
Q Consensus 189 ~~~ivIs~~k 198 (465)
++.+++-++.
T Consensus 265 ~~~~viDlav 274 (311)
T cd05213 265 KPRLIVDLAV 274 (311)
T ss_pred CCeEEEEeCC
Confidence 1356666653
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00051 Score=68.60 Aligned_cols=82 Identities=22% Similarity=0.279 Sum_probs=56.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHh-cCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~-~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
.++||+|||+|.||..++..|.+. .+ .++. +|+|+++..+. ... .+.
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~-----~el~aV~dr~~~~a~~---------~a~-------------~~g---- 53 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPG-----LTLSAVAVRDPQRHAD---------FIW-------------GLR---- 53 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCC-----eEEEEEECCCHHHHHH---------HHH-------------hcC----
Confidence 348999999999999999999762 12 5654 78888754332 000 000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHH
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~ 181 (465)
.....+++++.+.++|+|++|+|.....++.....
T Consensus 54 ---------------------------~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL 88 (271)
T PRK13302 54 ---------------------------RPPPVVPLDQLATHADIVVEAAPASVLRAIVEPVL 88 (271)
T ss_pred ---------------------------CCcccCCHHHHhcCCCEEEECCCcHHHHHHHHHHH
Confidence 01234567777788999999999998887776654
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0012 Score=67.33 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=33.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..+||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~-~~~---~el~L~D~~~~~~~ 45 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQ-GIA---DELVIIDINKEKAE 45 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCCchhH
Confidence 347999999999999999999987 632 37999999876544
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00057 Score=71.57 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=67.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.||..+|..|..- | .+|..|+|.....+. ...
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~af-G-----~~V~~~d~~~~~~~~--------------------------~~~----- 240 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPF-N-----CNLLYHDRLKMDPEL--------------------------EKE----- 240 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------Hhh-----
Confidence 347999999999999999999865 6 789999886421110 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
.++....++++++..+|+|++++| ...++.++. ++...+++ ++++|.+.-|
T Consensus 241 ------------------------~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG 293 (386)
T PLN03139 241 ------------------------TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK---GVLIVNNARG 293 (386)
T ss_pred ------------------------cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCC---CeEEEECCCC
Confidence 022334578898999999999999 456777663 34455665 6888888877
Q ss_pred c
Q 012349 200 V 200 (465)
Q Consensus 200 i 200 (465)
=
T Consensus 294 ~ 294 (386)
T PLN03139 294 A 294 (386)
T ss_pred c
Confidence 3
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0005 Score=64.22 Aligned_cols=97 Identities=23% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+...++|+|||.|.+|.++|..+..- | .+|..|+|....... ...
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~~~~--------------------------~~~--- 77 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAF-G-----MRVIGYDRSPKPEEG--------------------------ADE--- 77 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHT-T------EEEEEESSCHHHHH--------------------------HHH---
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecC-C-----ceeEEecccCChhhh--------------------------ccc---
Confidence 34457999999999999999999865 7 899999998742110 000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH-HHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl-~~l~~~l~~~~~~~ivIs~~ 197 (465)
... ...++++.+..||+|++++|. ..++.++ ++.-..+++ ++++|.++
T Consensus 78 --------------------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~---ga~lvN~a 127 (178)
T PF02826_consen 78 --------------------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKP---GAVLVNVA 127 (178)
T ss_dssp --------------------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTT---TEEEEESS
T ss_pred --------------------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeecccc---ceEEEecc
Confidence 012 235788889999999999994 3343433 223334555 68899988
Q ss_pred cccc
Q 012349 198 KGVE 201 (465)
Q Consensus 198 kGi~ 201 (465)
-|=.
T Consensus 128 RG~~ 131 (178)
T PF02826_consen 128 RGEL 131 (178)
T ss_dssp SGGG
T ss_pred chhh
Confidence 8733
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00042 Score=61.83 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=34.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
...++.|||+|.+|.+++..|+.. |. .+|++++|+.+++++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~----~~i~i~nRt~~ra~~ 51 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GA----KEITIVNRTPERAEA 51 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TS----SEEEEEESSHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CC----CEEEEEECCHHHHHH
Confidence 347999999999999999999998 72 469999999876553
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0031 Score=62.40 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=62.2
Q ss_pred HHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccE-E--EE
Q 012349 155 QEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI-L--YL 231 (465)
Q Consensus 155 ~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i-~--vl 231 (465)
.+++.++|+||+|||...+.++++++.+++++ +++|+-++ ++-.. +-+.+++.++.. .++ + =+
T Consensus 40 ~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~---~~iv~Dv~-SvK~~---------~~~~~~~~~~~~-~~~v~~HPM 105 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVSAIEDVLEEIAPYLKP---GAIVTDVG-SVKAP---------IVEAMERLLPEG-VRFVGGHPM 105 (258)
T ss_dssp HHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-T---TSEEEE---S-CHH---------HHHHHHHHHTSS-GEEEEEEES
T ss_pred HhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCC---CcEEEEeC-CCCHH---------HHHHHHHhcCcc-cceeecCCC
Confidence 46789999999999999999999999998887 67666544 33211 224555555411 111 1 12
Q ss_pred eCC-----chhh-hhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEec
Q 012349 232 GGP-----NIAS-EIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN 274 (465)
Q Consensus 232 sGP-----~~a~-ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~s 274 (465)
.|| ..+. +...|....++... +.+..+.+++++...|.++...
T Consensus 106 ~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 106 AGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM 156 (258)
T ss_dssp CSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred CCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence 344 2232 34456654444333 3467889999999999887665
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=66.35 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=31.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
||+|||+|.+|+++|..|+.+ +.+ .++.|+|.+++.++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~a~ 38 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL-GLF---SEIVLIDVNEGVAE 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCcchhh
Confidence 799999999999999999987 642 47999999876543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=66.80 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=31.8
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
|+|||+|.+|+++|..++.. |.. +++.++|++++.++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~-~~~---~el~l~D~~~~~~~g 38 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK-GLA---SELVLVDVNEEKAKG 38 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCccHHHH
Confidence 68999999999999999987 632 579999998876543
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=67.19 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=29.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||+|+|+ |..|..++..|+.. |.. .+|.++++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~-g~~---~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE-DVV---KEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEECcc
Confidence 79999998 99999999999987 621 3699999964
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00051 Score=61.79 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=33.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..++|+|+|+|.||.+++..|++. | .++|++|+|+++..+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~-g----~~~v~v~~r~~~~~~ 57 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAEL-G----AAKIVIVNRTLEKAK 57 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-C----CCEEEEEcCCHHHHH
Confidence 357999999999999999999876 4 168999999876544
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0014 Score=63.36 Aligned_cols=120 Identities=23% Similarity=0.302 Sum_probs=78.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
-||+|+|+|-.|+++|..||.. | ++|.+||..+.++...- ..+ ++ +++++.+.. .+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~-G-----yqVqlYDI~e~Ql~~AL----en~-~K---el~~Lee~g-~lrG------- 61 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS-G-----YQVQLYDILEKQLQTAL----ENV-EK---ELRKLEEHG-LLRG------- 61 (313)
T ss_pred cceeEeecccccchHHHHHhcc-C-----ceEEEeeccHHHHHHHH----HHH-HH---HHHHHHHhh-hhcc-------
Confidence 4899999999999999999998 8 89999999987765421 111 11 111111111 1111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.+.++| .+.-|..|++++|++++|=.|-.|+|.+ ...++..++...+.+ .+++-|-+..+-
T Consensus 62 -nlsa~e-------------qla~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~---~tIlaSSTSt~m 124 (313)
T KOG2305|consen 62 -NLSADE-------------QLALISGTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADP---TTILASSTSTFM 124 (313)
T ss_pred -CccHHH-------------HHHHHhCCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCC---ceEEeccccccC
Confidence 121111 1124667899999999998888999986 566777888887776 455545454443
Q ss_pred c
Q 012349 202 A 202 (465)
Q Consensus 202 ~ 202 (465)
+
T Consensus 125 p 125 (313)
T KOG2305|consen 125 P 125 (313)
T ss_pred h
Confidence 3
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00064 Score=69.26 Aligned_cols=77 Identities=26% Similarity=0.331 Sum_probs=53.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+|+|||+|.+|..++..+....+ ..+|++|+|++++.+.+ .+.+.+. +
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~----~~~V~V~~Rs~~~a~~~-----a~~~~~~---------------g----- 174 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRP----IKQVRVWGRDPAKAEAL-----AAELRAQ---------------G----- 174 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHH-----HHHHHhc---------------C-----
Confidence 45789999999999999986665212 26899999998765531 1111100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~ 171 (465)
.++.+..++++++.+||+|+.|||+.
T Consensus 175 ------------------------~~~~~~~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 175 ------------------------FDAEVVTDLEAAVRQADIISCATLST 200 (314)
T ss_pred ------------------------CceEEeCCHHHHHhcCCEEEEeeCCC
Confidence 02445677888899999999999977
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0026 Score=65.25 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=32.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~~ 82 (465)
++.||+|||+ |.+|+++|..|+.. |.+. ...++.|+|.++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~ 44 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASG-ELFGKDQPVVLHLLDIPP 44 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhC-CcccCCCccEEEEEecCC
Confidence 5789999998 99999999999887 6432 111799999965
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0016 Score=66.67 Aligned_cols=40 Identities=23% Similarity=0.438 Sum_probs=31.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCC-C-CeeEEEEecCch
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR-D-KVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~-~-~~~V~l~~r~~~ 83 (465)
++||+|||+ |.+|+++|..|+.. |.+. + ..++.|+|.+++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~-~~~~~~~~~el~L~Di~~~ 44 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG-EMFGPDQPVILQLLELPQA 44 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEEecCCc
Confidence 579999999 99999999999987 6542 1 127999998653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.002 Score=63.85 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=62.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+|||+|+|+ |.||..++..+.+..+ .+ |-+++++++.... . ..
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~-----~elvav~d~~~~~~~~-------------------------~-~~---- 45 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED-----LELVAAVDRPGSPLVG-------------------------Q-GA---- 45 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCccccc-------------------------c-CC----
Confidence 489999998 9999999988876412 44 4457776542211 0 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
..+..++|+++.+.++|+|+.++|+....+.+...... +..++.-+-|+
T Consensus 46 -------------------------~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~------G~~vvigttG~ 94 (257)
T PRK00048 46 -------------------------LGVAITDDLEAVLADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTGF 94 (257)
T ss_pred -------------------------CCccccCCHHHhccCCCEEEECCCHHHHHHHHHHHHHc------CCCEEEECCCC
Confidence 02334678888777899999899888877776665442 33455456677
Q ss_pred ccc
Q 012349 201 EAE 203 (465)
Q Consensus 201 ~~~ 203 (465)
..+
T Consensus 95 s~~ 97 (257)
T PRK00048 95 TEE 97 (257)
T ss_pred CHH
Confidence 654
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0031 Score=64.73 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=31.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~~ 82 (465)
+++||+|||+ |.+|+.+|..|+.. |.+. ...++.|+|.++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~-~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG-DMLGKDQPVILQLLEIPP 45 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh-hhcCCCCccEEEEEecCC
Confidence 5689999998 99999999999876 6432 012799999865
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0039 Score=62.07 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=46.9
Q ss_pred eEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 148 i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+++|+++...++|+||.++|+....+.+...... +..+|+-+.|++.+. .+.+.+.... ..
T Consensus 56 v~~~~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~------g~~vVigttg~~~e~---------~~~l~~aA~~--~g 118 (266)
T TIGR00036 56 VPVTDDLEAVETDPDVLIDFTTPEGVLNHLKFALEH------GVRLVVGTTGFSEED---------KQELADLAEK--AG 118 (266)
T ss_pred ceeeCCHHHhcCCCCEEEECCChHHHHHHHHHHHHC------CCCEEEECCCCCHHH---------HHHHHHHHhc--CC
Confidence 556788877645689999999998888777765542 344666666876541 1233333221 12
Q ss_pred EEEEeCCchhh
Q 012349 228 ILYLGGPNIAS 238 (465)
Q Consensus 228 i~vlsGP~~a~ 238 (465)
+.++.+|||+-
T Consensus 119 ~~v~~a~NfSl 129 (266)
T TIGR00036 119 IAAVIAPNFSI 129 (266)
T ss_pred ccEEEECcccH
Confidence 45777888875
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00094 Score=67.29 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=32.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
..++|+|+|+|.+|.++|..|... | .+|++++|+++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~-G-----~~V~v~~R~~~~ 186 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSAL-G-----ARVFVGARSSAD 186 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHC-C-----CEEEEEeCCHHH
Confidence 347999999999999999999877 7 789999998753
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0032 Score=64.08 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
|||+|||+|.+|+++|..|... +. +.++.|++++++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~-~~---~~el~LiDi~~~~ 37 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ-GL---GSELVLIDINEEK 37 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc-cc---cceEEEEEccccc
Confidence 6999999999999999999765 42 1489999999653
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0037 Score=63.72 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=29.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
|||+|||+ |.+|+++|..|+.. |.. .++.|+|.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~-~~~---~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEEecC
Confidence 69999999 99999999999877 531 479999987
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0013 Score=66.74 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=63.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|+||..+|..+..- | .+|..|+|+... .+.
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~af-G-----~~V~~~~r~~~~------------------------------~~~---- 160 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAF-G-----MNIYAYTRSYVN------------------------------DGI---- 160 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcc------------------------------cCc----
Confidence 347999999999999999877654 6 899999886310 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
. ....+++++++.||+|++++|. ..++.++. +....+++ ++++|.++-|
T Consensus 161 -------------------------~-~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~---ga~lIN~sRG 211 (303)
T PRK06436 161 -------------------------S-SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRK---GLAIINVARA 211 (303)
T ss_pred -------------------------c-cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCC---CeEEEECCCc
Confidence 0 0124678888999999999995 45665553 23344565 6888888877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 212 ~~ 213 (303)
T PRK06436 212 DV 213 (303)
T ss_pred cc
Confidence 43
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0014 Score=71.56 Aligned_cols=94 Identities=22% Similarity=0.172 Sum_probs=67.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.+|..+|..+..- | .+|..|++.... +. ...
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~----- 180 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAF-G-----MKVIAYDPYISP-ER--------------------------AAQ----- 180 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh-----
Confidence 347999999999999999999866 6 899999885421 00 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
..+... ++++.++.+|+|++++|.. .++.++ .+....+++ ++++|.++-|
T Consensus 181 ------------------------~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~---ga~lIN~aRG 232 (526)
T PRK13581 181 ------------------------LGVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKP---GVRIINCARG 232 (526)
T ss_pred ------------------------cCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCC---CeEEEECCCC
Confidence 012233 6888899999999999964 666666 345555666 6888888877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 233 ~~ 234 (526)
T PRK13581 233 GI 234 (526)
T ss_pred ce
Confidence 43
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.005 Score=62.66 Aligned_cols=153 Identities=13% Similarity=0.130 Sum_probs=95.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
.+|+|||-|+||..+|..|.++ | |.|...+|.+ -+.+ -++ |-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a-G-----h~li~hsRsd--yssa--------a~~-------------yg~~------- 96 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA-G-----HGLICHSRSD--YSSA--------AEK-------------YGSA------- 96 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc-C-----ceeEecCcch--hHHH--------HHH-------------hccc-------
Confidence 6899999999999999999999 8 9999999876 2211 111 1000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh-hhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~-l~~~~~~~ivIs~~kGi~~ 202 (465)
..+.-.|+- -+..|+|++||....++.++...-+. ++. +++++-.+.--.+
T Consensus 97 -----------------------~ft~lhdlc--erhpDvvLlctsilsiekilatypfqrlrr---gtlfvdvlSvKef 148 (480)
T KOG2380|consen 97 -----------------------KFTLLHDLC--ERHPDVVLLCTSILSIEKILATYPFQRLRR---GTLFVDVLSVKEF 148 (480)
T ss_pred -----------------------ccccHHHHH--hcCCCEEEEEehhhhHHHHHHhcCchhhcc---ceeEeeeeecchh
Confidence 011112332 26789999999999999999887665 454 5776644421111
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEE--EEeCCchhhhhhccCceEE---EEe---CChhHHHHHHHHHcCCCCe
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANA---RIC---GAEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~--vlsGP~~a~ev~~g~~t~~---~~~---~~~~~~~~l~~ll~~~g~~ 270 (465)
+ -+.+.++++....-++ -+-||--...-.+|.|-.. .++ ..++.++.+-++|.+.+-+
T Consensus 149 e----------k~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegck 214 (480)
T KOG2380|consen 149 E----------KELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCK 214 (480)
T ss_pred H----------HHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCe
Confidence 1 1455667765432222 3467765555556654322 122 2367889999999887754
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0013 Score=71.65 Aligned_cols=93 Identities=23% Similarity=0.270 Sum_probs=65.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++|+|||.|.+|..+|..+..- | .+|..|++.... +. ...
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 178 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAF-G-----MKVLAYDPYISP-ER--------------------------AEQ------ 178 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH--------------------------HHh------
Confidence 37899999999999999999766 6 789999875310 00 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+ .+...++++++++.||+|++++|.. .++.++ ++....+++ ++++|.++-|=
T Consensus 179 ---~--------------------g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---ga~lIN~aRG~ 232 (525)
T TIGR01327 179 ---L--------------------GVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKK---GVIIVNCARGG 232 (525)
T ss_pred ---c--------------------CCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCC---CeEEEEcCCCc
Confidence 0 1233457889999999999999954 666666 233335565 68888888773
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0077 Score=61.74 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=38.3
Q ss_pred HHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 31 ELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 31 ~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||.-..+......||+|||+ |.+|+.+|..|+.+ +.. .++.|+|+++
T Consensus 6 ~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~-~~~---~el~L~Di~~ 54 (323)
T PLN00106 6 SLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMN-PLV---SELHLYDIAN 54 (323)
T ss_pred hhhccccccCCCCCEEEEECCCCHHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence 355555566667789999999 99999999999976 532 4899999976
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=66.40 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=62.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
...+++|||+|.+|.+.+..++...+ -.+|.+|+|++++.++ +.+.++.. .+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~----~~~v~v~~r~~~~a~~-----~~~~~~~~-------------~~------ 177 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRD----IERVRVYSRTFEKAYA-----FAQEIQSK-------------FN------ 177 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCC----ccEEEEECCCHHHHHH-----HHHHHHHh-------------cC------
Confidence 45789999999999988877754313 1589999999876543 21112110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEe
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~ 196 (465)
..+....|.++++.++|+|+.|||+.. .++. .++++ ++.|+++
T Consensus 178 ------------------------~~~~~~~~~~~~~~~aDiVi~aT~s~~--p~i~---~~l~~---G~hV~~i 220 (325)
T PRK08618 178 ------------------------TEIYVVNSADEAIEEADIIVTVTNAKT--PVFS---EKLKK---GVHINAV 220 (325)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEccCCCC--cchH---HhcCC---CcEEEec
Confidence 023456788889999999999999883 3333 34555 5655444
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.004 Score=58.71 Aligned_cols=85 Identities=20% Similarity=0.170 Sum_probs=49.9
Q ss_pred eEEEECccHHHHHH--HHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 45 RIVGVGAGAWGSVF--TAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 45 kIaIIGaGamGsal--A~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||+|||+|+.-+.. -..+... ..+. ..++.|+|+++++++.+. ++.+.+.+. . +
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~-~~l~-~~ei~L~Did~~RL~~~~--~~~~~~~~~----------------~----~ 56 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRT-EELS-GSEIVLMDIDEERLEIVE--RLARRMVEE----------------A----G 56 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCT-TTST-EEEEEEE-SCHHHHHHHH--HHHHHHHHH----------------C----T
T ss_pred CEEEECCchHhhHHHHHHHHhcC-ccCC-CcEEEEEcCCHHHHHHHH--HHHHHHHHh----------------c----C
Confidence 79999999865553 2233332 2222 258999999998776421 122111110 0 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHH
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETK 174 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~ 174 (465)
. + ..+..|+|.++|+++||+||.++-.-..+
T Consensus 57 ~-~--------------------~~v~~ttd~~eAl~gADfVi~~irvGg~~ 87 (183)
T PF02056_consen 57 A-D--------------------LKVEATTDRREALEGADFVINQIRVGGLE 87 (183)
T ss_dssp T-S--------------------SEEEEESSHHHHHTTESEEEE---TTHHH
T ss_pred C-C--------------------eEEEEeCCHHHHhCCCCEEEEEeeecchH
Confidence 0 0 14778999999999999999998765444
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0034 Score=54.80 Aligned_cols=97 Identities=21% Similarity=0.222 Sum_probs=59.9
Q ss_pred eEEEEC-ccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 45 RIVGVG-AGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 45 kIaIIG-aGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||+|+| +|++|..+...|.++ - ..+ +.+++++.. ... . +.... + .+.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p----~~e~~~~~~~~~~-~g~----~----~~~~~---------~-~~~~~----- 51 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-P----DFELVALVSSSRS-AGK----P----LSEVF---------P-HPKGF----- 51 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-S----TEEEEEEEESTTT-TTS----B----HHHTT---------G-GGTTT-----
T ss_pred CEEEECCCCHHHHHHHHHHhcC-C----CccEEEeeeeccc-cCC----e----eehhc---------c-ccccc-----
Confidence 799999 899999999999986 2 144 455555541 110 1 11100 0 00100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
..+.+.+ +. +.+.++|+||+|+|+....++.+.+. +. +..||.++.-+
T Consensus 52 -----------------------~~~~~~~~~~-~~~~~~Dvvf~a~~~~~~~~~~~~~~---~~---g~~ViD~s~~~ 100 (121)
T PF01118_consen 52 -----------------------EDLSVEDADP-EELSDVDVVFLALPHGASKELAPKLL---KA---GIKVIDLSGDF 100 (121)
T ss_dssp -----------------------EEEBEEETSG-HHHTTESEEEE-SCHHHHHHHHHHHH---HT---TSEEEESSSTT
T ss_pred -----------------------cceeEeecch-hHhhcCCEEEecCchhHHHHHHHHHh---hC---CcEEEeCCHHH
Confidence 0223333 44 44689999999999999988888773 33 56788887554
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0023 Score=65.61 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=54.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|.+|.+.+..+... - +..+|.+|+|++++.+. +.+.+++ + +
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~-~---~~~~v~V~~r~~~~~~~-----~~~~~~~-------------~--g----- 177 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV-F---DLEEVSVYCRTPSTREK-----FALRASD-------------Y--E----- 177 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHH-----HHHHHHh-------------h--C-----
Confidence 457899999999999977777543 1 12689999999876543 1111110 0 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~ 171 (465)
..+.+.++.+++++++|+|+.|||+.
T Consensus 178 ------------------------~~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 178 ------------------------VPVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred ------------------------CcEEEeCCHHHHhccCCEEEEecCCC
Confidence 03456788999999999999999985
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0034 Score=59.92 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.||+|+|+|.+|+.+|..|++. |. .+++++|++
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~-Gv----g~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARA-GI----GKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHc-CC----CEEEEECCC
Confidence 6899999999999999999999 82 379999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0015 Score=68.36 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=63.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.++|+|||.|++|..+|..+..- | .+|..|++..... .+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~-G-----~~V~~~Dp~~~~~-----------------------------~~------ 154 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGL-G-----WKVLVCDPPRQEA-----------------------------EG------ 154 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCccccc-----------------------------cc------
Confidence 47899999999999999999866 7 8999998743200 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-----hHHHHH-HHHHHhhhccCCCCEEEEe
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----ETKEVF-EEISRYWKERITVPVIISL 196 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-----~l~~vl-~~l~~~l~~~~~~~ivIs~ 196 (465)
... ..++++.++.||+|++++|-. .+..++ ++....+++ ++++|.+
T Consensus 155 ------------------------~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~---gailIN~ 206 (381)
T PRK00257 155 ------------------------DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRP---GAWLINA 206 (381)
T ss_pred ------------------------Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCC---CeEEEEC
Confidence 011 235778889999999999953 244444 223344565 6889988
Q ss_pred eccccc
Q 012349 197 AKGVEA 202 (465)
Q Consensus 197 ~kGi~~ 202 (465)
+-|=..
T Consensus 207 aRG~vV 212 (381)
T PRK00257 207 SRGAVV 212 (381)
T ss_pred CCCccc
Confidence 887433
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0019 Score=66.33 Aligned_cols=79 Identities=25% Similarity=0.329 Sum_probs=55.6
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+.++|+|||+|.+|.+.+..++...+ ..+|.+|+|++++++++ .+.+++ .+ +
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~----~~~V~v~~R~~~~a~~l-----~~~~~~-------------~~-g---- 182 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRP----IREVRVWARDAAKAEAY-----AADLRA-------------EL-G---- 182 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCC----CCEEEEEcCCHHHHHHH-----HHHHhh-------------cc-C----
Confidence 345799999999999998888875312 15899999998766542 111110 00 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~ 171 (465)
..+....|+++++.++|+|+.|||+.
T Consensus 183 -------------------------~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 183 -------------------------IPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred -------------------------ceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 02445688889999999999999985
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0031 Score=65.35 Aligned_cols=152 Identities=14% Similarity=0.147 Sum_probs=94.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+.|+|||.|.||+-+|.-++++ | +.|.+|+|+.++.++ .++... ..+
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~-G-----~~VavyNRt~~ktd~--------f~~~~~-----------~~k------- 50 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADH-G-----YTVAVYNRTTEKTDE--------FLAERA-----------KGK------- 50 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhc-C-----ceEEEEeCCHHHHHH--------HHHhCc-----------cCC-------
Confidence 35799999999999999999999 8 899999999987664 232211 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHH---HHhcCCCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ---EAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~---eal~~aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
++....+++ ..++..--|++-|++ ..+.+++++|.|++.+ +.++|---|
T Consensus 51 ------------------------~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p~Le~---gDIiIDGGN 103 (473)
T COG0362 51 ------------------------NIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEK---GDIIIDGGN 103 (473)
T ss_pred ------------------------CccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHhhcCC---CCEEEeCCC
Confidence 112223333 346777888888887 5678999999999987 678876665
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHc
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~ 265 (465)
..-.++ ..+..+ +.+ .|. . .+=.|-+=.+|.+..-|+ ++.+++.+..+.++.+|.
T Consensus 104 s~y~DT-----~RR~~e-L~~-~Gi---~-FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~ 158 (473)
T COG0362 104 SHYKDT-----IRRNKE-LSE-KGI---L-FVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILT 158 (473)
T ss_pred cCCchH-----HHHHHH-HHh-cCC---e-EEeccccccccccccCCC-cCCCCCHHHHHHHHHHHH
Confidence 544432 111111 111 121 1 122333334455544454 455666666666666665
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0092 Score=62.60 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=31.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCe--eEEEE--ecCchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKV--LIRIW--RRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~--~V~l~--~r~~~~~~ 86 (465)
.+.||+|||+ |.+|+++|..|+.. |.+..+. .+.|+ +++++.++
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~-~l~~~~~ei~L~L~diD~~~~~a~ 91 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASG-EVFGQDQPIALKLLGSERSKEALE 91 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-cccCCCCceEEEEeccCccchhhh
Confidence 4689999999 99999999999987 6543112 34445 66665443
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0045 Score=65.80 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=68.8
Q ss_pred ceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+|+ +.--+...|++....+. ..+|.|+|.++++++.+ ..+.+.+. ... +
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~-~~ei~L~Did~~Rl~~v--~~l~~~~~----------------~~~----g 57 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELP-ISEVTLYDIDEERLDII--LTIAKRYV----------------EEV----G 57 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCC-CCEEEEEcCCHHHHHHH--HHHHHHHH----------------Hhh----C
Confidence 7999999998 33334444444310122 26899999998766542 11111111 100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-------------------------------
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST------------------------------- 171 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~------------------------------- 171 (465)
. . ..+..|+|.++|+++||+||.++-.-
T Consensus 58 ~-~--------------------~~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~a 116 (425)
T cd05197 58 A-D--------------------IKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSG 116 (425)
T ss_pred C-C--------------------eEEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhh
Confidence 0 0 14788999999999999999987442
Q ss_pred -----hHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 172 -----ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 172 -----~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.+.++++++.++.+ ++++|..+|-++.
T Consensus 117 lrni~ii~~i~~~i~~~~P----~a~lin~TNP~di 148 (425)
T cd05197 117 LRQIPYVLDIARKXEKLSP----DAWYLNFTNPAGE 148 (425)
T ss_pred hhhHHHHHHHHHHHHHhCC----CcEEEecCChHHH
Confidence 24466666666653 6889999987654
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0054 Score=61.68 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+|-++-.|-.-.-=+.-|+... .....++|+|||+|..|.+++..|+.. |. .+|++++|+.++++.
T Consensus 100 ~~g~l~G~NTD~~G~~~~l~~~~--~~~~~k~vlIlGaGGaaraia~aL~~~-G~----~~I~I~nR~~~ka~~ 166 (284)
T PRK12549 100 RDGRRIGHNTDWSGFAESFRRGL--PDASLERVVQLGAGGAGAAVAHALLTL-GV----ERLTIFDVDPARAAA 166 (284)
T ss_pred cCCEEEEEcCCHHHHHHHHHhhc--cCccCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHHH
Confidence 46767666765554444554322 122347899999999999999999987 72 479999999876553
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0068 Score=61.83 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=29.4
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||+|||+ |++|+++|..|+.+ +.. .++.|+|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~-~~~---~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ-PYV---SELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC-CCC---cEEEEecCCC
Confidence 7999999 99999999999887 632 4799999976
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0026 Score=65.22 Aligned_cols=98 Identities=21% Similarity=0.207 Sum_probs=68.7
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc-hhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG-RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~-~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
+-.-++|+|||.|.+|+.+|..+..- | .+|..|++.. ..... .
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~af-g-----m~v~~~d~~~~~~~~~--------------------------~---- 182 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAF-G-----MKVIGYDPYSPRERAG--------------------------V---- 182 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCCchhhhc--------------------------c----
Confidence 33457999999999999999999765 6 8999999832 11000 0
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHHH-HHHhhhccCCCCEEEEe
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEE-ISRYWKERITVPVIISL 196 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~~-l~~~l~~~~~~~ivIs~ 196 (465)
.......++++.+..||+|++.+|- ..++.++.. .-..+++ ++++|.+
T Consensus 183 ---------------------------~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~---gailIN~ 232 (324)
T COG0111 183 ---------------------------DGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKP---GAILINA 232 (324)
T ss_pred ---------------------------ccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCC---CeEEEEC
Confidence 0123346788999999999999994 567766632 2234565 6789999
Q ss_pred ecccccc
Q 012349 197 AKGVEAE 203 (465)
Q Consensus 197 ~kGi~~~ 203 (465)
+-|-..+
T Consensus 233 aRG~vVd 239 (324)
T COG0111 233 ARGGVVD 239 (324)
T ss_pred CCcceec
Confidence 8884433
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0019 Score=67.42 Aligned_cols=91 Identities=25% Similarity=0.261 Sum_probs=63.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..++|+|||.|++|+.+|..+..- | .+|..|++... +. ..
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~-G-----~~V~~~dp~~~--~~----------------------------~~---- 154 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEAL-G-----IKTLLCDPPRA--DR----------------------------GD---- 154 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCccc--cc----------------------------cc----
Confidence 457999999999999999999866 7 89999986421 00 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-----HHHHH-HHHHHhhhccCCCCEEEE
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVIIS 195 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-----l~~vl-~~l~~~l~~~~~~~ivIs 195 (465)
.. ...++++.+..||+|++.+|-.. +..++ ++.-..+++ ++++|.
T Consensus 155 -------------------------~~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~---gailIN 205 (378)
T PRK15438 155 -------------------------EG-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKP---GAILIN 205 (378)
T ss_pred -------------------------cc-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCC---CcEEEE
Confidence 00 12467888899999999998432 44444 233344565 789999
Q ss_pred eecccc
Q 012349 196 LAKGVE 201 (465)
Q Consensus 196 ~~kGi~ 201 (465)
++-|=.
T Consensus 206 ~aRG~v 211 (378)
T PRK15438 206 ACRGAV 211 (378)
T ss_pred CCCchh
Confidence 988843
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0031 Score=66.73 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=66.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|++|..+|..+..- | .+|..|++.+.. . ..
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-G-----m~V~~~d~~~~~-~---------------------------~~------ 189 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-G-----MRVYFYDIEDKL-P---------------------------LG------ 189 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCccc-c---------------------------cC------
Confidence 447999999999999999998755 6 789999875320 0 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
......++++.++.||+|++.+|. ..++.++. +.-..+++ ++++|.++-|
T Consensus 190 -------------------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG 241 (409)
T PRK11790 190 -------------------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKP---GAILINASRG 241 (409)
T ss_pred -------------------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCC---CeEEEECCCC
Confidence 122335788999999999999995 45666662 33344565 6889988877
Q ss_pred ccc
Q 012349 200 VEA 202 (465)
Q Consensus 200 i~~ 202 (465)
=..
T Consensus 242 ~~v 244 (409)
T PRK11790 242 TVV 244 (409)
T ss_pred ccc
Confidence 433
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0034 Score=59.78 Aligned_cols=50 Identities=24% Similarity=0.218 Sum_probs=37.3
Q ss_pred HhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 28 RLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 28 ~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|.|.-.+++|...+. ..||+|+|+|.+|+.++..|+.. |. ..++++|.+.
T Consensus 3 ~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~-GV----g~i~lvD~d~ 55 (197)
T cd01492 3 LYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLS-GI----GSLTILDDRT 55 (197)
T ss_pred hhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence 444444445443333 26899999999999999999999 83 5799999875
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=61.29 Aligned_cols=237 Identities=16% Similarity=0.214 Sum_probs=135.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|.+|.|+|+|..+--+|..+.+. + .+.|-+.+|...+.+ .+.+.+++.. ..+...+.....
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~-~----~~~vGi~~R~S~rSq-----~f~~aL~~~~---------~~~~v~vqn~~h 61 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH-G----NCRVGIVGRESVRSQ-----RFFEALARSD---------GLFEVSVQNEQH 61 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc-c----CceeeeecCcchhHH-----HHHHHHHhCC---------CEEEEeecchhh
Confidence 45899999999999999999876 4 257999999765433 3444444321 011111100000
Q ss_pred CCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh-hhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~-l~~~~~~~ivIs~~kGi 200 (465)
. .+ +|-+ .+ .+..|.++...+.|.+|+|||+++..+|+++|..- ++. -..+|-++..+
T Consensus 62 ~-~l-------~G~~---------~id~~~~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~---vk~iVLvSPtf 121 (429)
T PF10100_consen 62 Q-AL-------SGEC---------TIDHVFQDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKR---VKSIVLVSPTF 121 (429)
T ss_pred h-hh-------cCeE---------EhhHhhcCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhh---CCEEEEECccc
Confidence 0 00 0000 01 13467778788899999999999999999999764 332 23455566666
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEe---C---------Cchhhhhh-ccCceEEEEe---CChhHHHHHHHHH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLG---G---------PNIASEIY-NKEYANARIC---GAEKWRKPLAKFL 264 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vls---G---------P~~a~ev~-~g~~t~~~~~---~~~~~~~~l~~ll 264 (465)
+.. ..+...+.+ .+.. ..+...| | |+.+---+ +++ +.++ +++.....++.+|
T Consensus 122 GS~-------~lv~~~l~~-~~~~-~EVISFStY~gdTr~~d~~~~~~vlt~~vK~k---iYigSt~~~s~~~~~l~~~~ 189 (429)
T PF10100_consen 122 GSH-------LLVKGFLND-LGPD-AEVISFSTYYGDTRWSDGEQPNRVLTTAVKKK---IYIGSTHSNSPELDKLCRLL 189 (429)
T ss_pred chH-------HHHHHHHHh-cCCC-ceEEEeecccccceeccCCCcceehhhhhhce---EEEEeCCCCChHHHHHHHHH
Confidence 543 233333333 2211 1121111 1 11111101 111 1222 2456789999999
Q ss_pred cCCCCeEEecCChHHHHHHH--------HHHHHHHHHHHhhh-cc-c-----C-CCcchHH--HHHHHHHHHHHHHHHHh
Q 012349 265 RRPHFTVWDNGDLVTHEVMG--------GLKNVYAIGAGMVA-AL-T-----N-ESATSKS--VYFAHCTSEMVFITHLL 326 (465)
Q Consensus 265 ~~~g~~v~~s~Di~gve~~g--------alKNviAia~Gi~~-gl-~-----~-g~~n~~a--~li~~~~~E~~~l~~a~ 326 (465)
...|+.+...+...-+|-.+ .+.|-.++.+=+-. +. + + .++=+.. .-|...-.||..+..++
T Consensus 190 ~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l 269 (429)
T PF10100_consen 190 AQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKL 269 (429)
T ss_pred HHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999998888743 35777766654421 11 1 1 1232221 33556778999999999
Q ss_pred CCCc
Q 012349 327 AEEP 330 (465)
Q Consensus 327 G~~~ 330 (465)
|+++
T Consensus 270 ~~~~ 273 (429)
T PF10100_consen 270 GIEP 273 (429)
T ss_pred CCCc
Confidence 9743
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0062 Score=62.43 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=30.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~~ 82 (465)
.||+|+|| |.+|+.+|..|+.. |.+. ...++.|+|+++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~-~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASG-ELFGDDQPVILHLLDIPP 41 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CccCCCCceEEEEEecCC
Confidence 38999999 99999999999976 6442 113699999987
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0031 Score=61.30 Aligned_cols=88 Identities=25% Similarity=0.335 Sum_probs=60.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|+|+|+|+|.+|..+|..|++. | |+|.+++++++.+++...+. +. . ..+. ++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g-----~~Vv~Id~d~~~~~~~~~~~----~~--------------~-~~v~---gd 52 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-G-----HNVVLIDRDEERVEEFLADE----LD--------------T-HVVI---GD 52 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-C-----CceEEEEcCHHHHHHHhhhh----cc--------------e-EEEE---ec
Confidence 7999999999999999999999 7 99999999998665311000 00 0 0000 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCcchHHHHHHHHHHh
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRY 183 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~ea-l~~aDiVIlaVps~~l~~vl~~l~~~ 183 (465)
-.-.+-+++| +.++|+++.++..+....++-.+...
T Consensus 53 ------------------------~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~ 89 (225)
T COG0569 53 ------------------------ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALK 89 (225)
T ss_pred ------------------------CCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHH
Confidence 0001123444 78899999999999999988887643
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0022 Score=69.78 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=40.6
Q ss_pred hHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 29 ~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++..++.++...-...+|+|||+|.||.+++..|... |. .+|++++|+.+.++
T Consensus 252 v~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~-G~----~~V~V~nRs~era~ 304 (519)
T PLN00203 252 VELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSK-GC----TKMVVVNRSEERVA 304 (519)
T ss_pred HHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhC-CC----CeEEEEeCCHHHHH
Confidence 4455667764223457999999999999999999987 61 47999999986554
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0023 Score=66.84 Aligned_cols=88 Identities=23% Similarity=0.274 Sum_probs=60.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||.|||+|.+|++.|..|+++ |. .+|++.+|+.++++++.. ... ..+.-.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~-~d----~~V~iAdRs~~~~~~i~~--------~~~----------~~v~~~----- 52 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN-GD----GEVTIADRSKEKCARIAE--------LIG----------GKVEAL----- 52 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC-CC----ceEEEEeCCHHHHHHHHh--------hcc----------ccceeE-----
Confidence 58999999999999999999998 62 699999999887765321 100 001100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHH
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEI 180 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l 180 (465)
..+ +.-...+.+++++.|+||-|.|+.....+++..
T Consensus 53 --------------~vD--------~~d~~al~~li~~~d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 53 --------------QVD--------AADVDALVALIKDFDLVINAAPPFVDLTILKAC 88 (389)
T ss_pred --------------Eec--------ccChHHHHHHHhcCCEEEEeCCchhhHHHHHHH
Confidence 000 111234567789999999999998777776543
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0038 Score=58.65 Aligned_cols=98 Identities=19% Similarity=0.336 Sum_probs=67.2
Q ss_pred hhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHH-HHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchh
Q 012349 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAML-QDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSRE 101 (465)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~L-a~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~ 101 (465)
..+.-+|+|+.++|-. .+-++.|||+|++|.|++..- .++.| . -|-++|.+++.+-.
T Consensus 67 nV~~L~~ff~~~Lg~~--~~tnviiVG~GnlG~All~Y~f~~~~~-----~~iv~~FDv~~~~VG~-------------- 125 (211)
T COG2344 67 NVKYLRDFFDDLLGQD--KTTNVIIVGVGNLGRALLNYNFSKKNG-----MKIVAAFDVDPDKVGT-------------- 125 (211)
T ss_pred cHHHHHHHHHHHhCCC--cceeEEEEccChHHHHHhcCcchhhcC-----ceEEEEecCCHHHhCc--------------
Confidence 3567789999999765 568999999999999998763 32323 3 35577877753321
Q ss_pred hhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHH
Q 012349 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEE 179 (465)
Q Consensus 102 ~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~ 179 (465)
...++ ++.-.++++..++ +.|+.|+|||+..-.++++.
T Consensus 126 -----------~~~~v-----------------------------~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad~ 165 (211)
T COG2344 126 -----------KIGDV-----------------------------PVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVADR 165 (211)
T ss_pred -----------ccCCe-----------------------------eeechHHHHHHHHhcCccEEEEEccHHHHHHHHHH
Confidence 11111 1222355655555 78999999999999999888
Q ss_pred HHH
Q 012349 180 ISR 182 (465)
Q Consensus 180 l~~ 182 (465)
|..
T Consensus 166 Lv~ 168 (211)
T COG2344 166 LVK 168 (211)
T ss_pred HHH
Confidence 764
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0057 Score=60.87 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=30.5
Q ss_pred eEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 148 i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+.+++|+++.-.+.|+|+.|+|+....+...+... . +..+++...|
T Consensus 49 ~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~~aL~---a---Gk~Vvi~s~~ 94 (265)
T PRK13303 49 VRVVSSVDALPQRPDLVVECAGHAALKEHVVPILK---A---GIDCAVISVG 94 (265)
T ss_pred CeeeCCHHHhccCCCEEEECCCHHHHHHHHHHHHH---c---CCCEEEeChH
Confidence 34567776653568999999999877766666543 3 3445655555
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0046 Score=63.00 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=63.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|++|..+|..+.-- | .+|..|+|.....+ .
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~f-g-----m~V~~~d~~~~~~~----------------------------~------ 183 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAF-G-----AKVVYYSTSGKNKN----------------------------E------ 183 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhc-C-----CEEEEECCCccccc----------------------------c------
Confidence 447999999999999999988643 5 78988887531000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+. ..++++.++.||+|++++|- ..++.++. +.-..+++ ++++|.++-|
T Consensus 184 -------------------------~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~---~a~lIN~aRG 234 (311)
T PRK08410 184 -------------------------EYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKD---GAILINVGRG 234 (311)
T ss_pred -------------------------Cce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCC---CeEEEECCCc
Confidence 111 23678889999999999994 45655552 23344565 7899998888
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 235 ~v 236 (311)
T PRK08410 235 GI 236 (311)
T ss_pred cc
Confidence 43
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0037 Score=66.24 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=33.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
|+|.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g-----~~v~vid~~~~~~~~ 38 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-N-----NDVTVIDTDEERLRR 38 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHH
Confidence 6899999999999999999988 7 899999998876543
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0095 Score=59.26 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=44.9
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|-++-.|-.-.--+.-|++. +. ....+++.|+|+|.+|.+++..|++. | .+|++++|++++++
T Consensus 90 ~~g~l~g~NTD~~G~~~~l~~~-~~-~~~~k~vliiGaGg~g~aia~~L~~~-g-----~~v~v~~R~~~~~~ 154 (270)
T TIGR00507 90 EDGKLVGYNTDGIGLVSDLERL-IP-LRPNQRVLIIGAGGAARAVALPLLKA-D-----CNVIIANRTVSKAE 154 (270)
T ss_pred eCCEEEEEcCCHHHHHHHHHhc-CC-CccCCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 3555555555444444445442 11 12346899999999999999999988 7 78999999876544
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0055 Score=63.39 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=62.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|..|..-...++.-.. -.+|++|+|++++.++ +.+.++. .+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~----i~~V~v~~r~~~~a~~-----~~~~~~~---------------~~----- 178 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLG----IEEIRLYDIDPAATAK-----LARNLAG---------------PG----- 178 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCC----ceEEEEEeCCHHHHHH-----HHHHHHh---------------cC-----
Confidence 45789999999999888776665311 2689999999876553 1111110 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEE
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivI 194 (465)
.++.+.++.++++.+||+|+.||++.....+++. .++++ ++.|.
T Consensus 179 ------------------------~~v~~~~~~~~av~~ADIIvtaT~S~~~~Pvl~~--~~lkp---G~hV~ 222 (346)
T PRK07589 179 ------------------------LRIVACRSVAEAVEGADIITTVTADKTNATILTD--DMVEP---GMHIN 222 (346)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEecCCCCCCceecH--HHcCC---CcEEE
Confidence 0355678899999999999999987653333332 35565 56543
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=62.61 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=38.6
Q ss_pred CeEEecCHHHHhcCCCEEEEecCcc------------------------------------hHHHHHHHHHHhhhccCCC
Q 012349 147 PLKVVTNLQEAVWDADIVINGLPST------------------------------------ETKEVFEEISRYWKERITV 190 (465)
Q Consensus 147 ~i~~t~dl~eal~~aDiVIlaVps~------------------------------------~l~~vl~~l~~~l~~~~~~ 190 (465)
.+..|+|.++|+++||+||.++-.. .+.++++++.++.+ +
T Consensus 61 ~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~p----d 136 (437)
T cd05298 61 KFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSP----D 136 (437)
T ss_pred EEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCC----C
Confidence 4788999999999999999987442 24555666666543 5
Q ss_pred CEEEEeeccccc
Q 012349 191 PVIISLAKGVEA 202 (465)
Q Consensus 191 ~ivIs~~kGi~~ 202 (465)
..+|..+|....
T Consensus 137 a~lin~tNP~~~ 148 (437)
T cd05298 137 AWILNYSNPAAI 148 (437)
T ss_pred eEEEEecCcHHH
Confidence 788888887654
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.011 Score=60.54 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=31.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~~ 82 (465)
+.||+|+|+ |.+|++++..|+.. +.+. .+.+|.++++++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~-~~~~~~~~~el~L~D~~~ 43 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKG-DVFGPDQPVILHLLDIPP 43 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-cccCCCCCcEEEEEEcCC
Confidence 579999999 99999999999886 5432 124899999965
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.006 Score=61.72 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.+||+|||+|.+|.+++..|... | .+|++++|+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-G-----a~V~v~~r~~~~ 187 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-G-----ANVTVGARKSAH 187 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHH
Confidence 47999999999999999999877 7 799999998753
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.011 Score=62.64 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred CeEEecCHHHHhcCCCEEEEec
Q 012349 147 PLKVVTNLQEAVWDADIVINGL 168 (465)
Q Consensus 147 ~i~~t~dl~eal~~aDiVIlaV 168 (465)
.+..|+|.++|+.+||+||.++
T Consensus 62 ~v~~t~d~~~al~gadfVi~~~ 83 (419)
T cd05296 62 KVHLTTDRREALEGADFVFTQI 83 (419)
T ss_pred EEEEeCCHHHHhCCCCEEEEEE
Confidence 4778999999999999999987
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.014 Score=59.95 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=30.7
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCch
Q 012349 45 RIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~~~ 83 (465)
||+|||+ |.+|+++|..|+.. +.+. ...++.|+|+++.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-RMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-cccCCCCccEEEEEecCCc
Confidence 6999999 99999999999987 6542 2237999999654
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0044 Score=64.12 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=65.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.+|..+|..+..- | .+|..|+|....... .. ..++.-. .
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~af-G-----~~V~~~dr~~~~~~~-----------~~-----------~~~~~~~--~ 207 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPF-G-----VKLLATRRSWTSEPE-----------DG-----------LLIPNGD--V 207 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCChhhh-----------hh-----------hcccccc--c
Confidence 347999999999999999999865 6 799999886321000 00 0000000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
. .+ . .......++++++..||+|++++|. ..++.++. +.-..+++ ++++|.+.-|
T Consensus 208 ~--~~-----~-------------~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~---ga~lINvaRG 264 (347)
T PLN02928 208 D--DL-----V-------------DEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKK---GALLVNIARG 264 (347)
T ss_pred c--cc-----c-------------cccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCC---CeEEEECCCc
Confidence 0 00 0 0000235788999999999999994 34555552 23334565 6889988877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 265 ~l 266 (347)
T PLN02928 265 GL 266 (347)
T ss_pred cc
Confidence 33
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0042 Score=65.81 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=39.4
Q ss_pred hHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 29 ~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++..++.++... .+||.|||+|.||.+++..|+.. |. .++++++|+.++++
T Consensus 169 v~la~~~~~~l~--~kkvlviGaG~~a~~va~~L~~~-g~----~~I~V~nRt~~ra~ 219 (414)
T PRK13940 169 ITLAKRQLDNIS--SKNVLIIGAGQTGELLFRHVTAL-AP----KQIMLANRTIEKAQ 219 (414)
T ss_pred HHHHHHHhcCcc--CCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEECCCHHHHH
Confidence 345566665443 36899999999999999999987 62 57999999876544
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.006 Score=61.96 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=33.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+..+|+|||+|.+|...+..++...+ ..+|.+|+|++++.++
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~----~~~v~v~~r~~~~a~~ 165 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLP----VRRVWVRGRTAASAAA 165 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCC----CCEEEEEcCCHHHHHH
Confidence 45799999999999999999975313 1579999999876543
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.01 Score=60.55 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=29.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||+|||+ |.+|++++..+....+. .+++.++++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~---~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPA---GSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCC---ccEEEEEecCCC
Confidence 79999999 99999999988652121 268999998753
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.016 Score=53.97 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=29.7
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||+|||+|.+|+.++..|++. |. .+++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GV----GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 689999999999999999998 83 4799999986
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0057 Score=58.79 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=37.8
Q ss_pred hhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHh-cCCCCCCee-EEEEecCch
Q 012349 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVL-IRIWRRPGR 83 (465)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~-~G~~~~~~~-V~l~~r~~~ 83 (465)
.+.+-++++|+.+++. ...+|+|||+|.+|..++..+... .| .+ |-+++++++
T Consensus 67 ~v~~l~~~~~~~l~~~--~~~rV~IIGaG~iG~~l~~~~~~~~~g-----~~ivgv~D~d~~ 121 (213)
T PRK05472 67 NVEELLEFIEKILGLD--RTWNVALVGAGNLGRALLNYNGFEKRG-----FKIVAAFDVDPE 121 (213)
T ss_pred eHHHHHHHHHHHhCCC--CCcEEEEECCCHHHHHHHHhhhcccCC-----cEEEEEEECChh
Confidence 4566678888888776 457899999999999999864321 13 44 446777653
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.023 Score=60.64 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=33.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCC----eeEEEEecCchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK----VLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~----~~V~l~~r~~~~~~ 86 (465)
++.||+|||+ |.+|+++|..|+.. +.|.++ .++.+++++++.++
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~ 147 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALE 147 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhH
Confidence 4589999999 99999999999876 433311 26888899887654
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0057 Score=62.81 Aligned_cols=95 Identities=26% Similarity=0.315 Sum_probs=64.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+...++|||+|..+-.-...+..-.+ -.+|.+|+|+++..++ +...+.+. +
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~~----~~~I~i~~r~~~~~e~-----~a~~l~~~--------------------~ 179 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVRD----IREIRVYSRDPEAAEA-----FAARLRKR--------------------G 179 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhCC----ccEEEEEcCCHHHHHH-----HHHHHHhh--------------------c
Confidence 44689999999999998888875422 2689999999986653 11111110 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEE
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs 195 (465)
+ ..+.+..+.++++++||+|+-|||+.. .++. ..++++ ++.|.+
T Consensus 180 ~-----------------------~~v~a~~s~~~av~~aDiIvt~T~s~~--Pil~--~~~l~~---G~hI~a 223 (330)
T COG2423 180 G-----------------------EAVGAADSAEEAVEGADIVVTATPSTE--PVLK--AEWLKP---GTHINA 223 (330)
T ss_pred C-----------------------ccceeccCHHHHhhcCCEEEEecCCCC--Ceec--HhhcCC---CcEEEe
Confidence 1 135677899999999999999999987 3332 234555 555433
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=56.25 Aligned_cols=82 Identities=20% Similarity=0.396 Sum_probs=58.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|+|++||+|++|..+...+-+. -. +-.-|.+|+|+.+++.++ .. .+.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~--~~-~~e~v~v~D~~~ek~~~~---------~~-------------~~~-------- 47 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG--RV-DFELVAVYDRDEEKAKEL---------EA-------------SVG-------- 47 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC--Cc-ceeEEEEecCCHHHHHHH---------Hh-------------hcC--------
Confidence 6899999999999998887532 11 113588999998755421 00 011
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHH
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~ 182 (465)
....+++++.+.+.|+++.|-.++.+++...++..
T Consensus 48 ------------------------~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~ 82 (255)
T COG1712 48 ------------------------RRCVSDIDELIAEVDLVVEAASPEAVREYVPKILK 82 (255)
T ss_pred ------------------------CCccccHHHHhhccceeeeeCCHHHHHHHhHHHHh
Confidence 11236777777999999999999999998877654
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.01 Score=61.36 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=31.2
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+..++|+||+|+|.....++...+.. . +..||.++..+-.
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~~a~~---a---G~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAPQLLE---A---GVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCcccCC
Confidence 45679999999999988888777653 2 5689999877654
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0064 Score=62.31 Aligned_cols=79 Identities=24% Similarity=0.270 Sum_probs=55.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|.+|.+.+..|+...+. .+|++|+|+.++.++ +.+.+.+. +.
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i----~~v~V~~R~~~~a~~-----~a~~~~~~-------------~g------ 179 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDI----RSARIWARDSAKAEA-----LALQLSSL-------------LG------ 179 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCc----cEEEEECCCHHHHHH-----HHHHHHhh-------------cC------
Confidence 457899999999999999998743131 579999999876553 21111100 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~ 172 (465)
..+...+++++++.++|+|+.|||+..
T Consensus 180 ------------------------~~v~~~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 180 ------------------------IDVTAATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred ------------------------ceEEEeCCHHHHhccCCEEEEecCCCC
Confidence 024456788889999999999999853
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=56.29 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=34.6
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+-..|+|+|+|.|+||..+|..|.+. | ++|++++++++.++
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~-G-----~~Vvv~D~~~~~~~ 65 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEE-G-----AKLIVADINEEAVA 65 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 33457999999999999999999998 7 89999998875443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.014 Score=59.72 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
+|.||+|||+ |.+|+.+|..|+.. +.. .++.|+|++
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~-~~~---~elvL~Di~ 43 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQN-PHV---SELSLYDIV 43 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcC-CCC---CEEEEEecC
Confidence 4679999999 99999999999865 421 589999993
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.012 Score=62.40 Aligned_cols=56 Identities=20% Similarity=0.377 Sum_probs=48.4
Q ss_pred HHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
++.+++|++.++.....+++|.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~-~-----~~v~vid~~~~~~~~ 269 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKE-G-----YSVKLIERDPERAEE 269 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHH
Confidence 4678888988887776779999999999999999999987 6 899999999876553
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.034 Score=49.26 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=30.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|+|+|++|+.++..|++. |. .+++++|.+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv----~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GV----GKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TT----SEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CC----CceeecCCcc
Confidence 6899999999999999999999 83 5899999875
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0068 Score=64.33 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=32.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
..++|+|||+|.||..++..|... |. .+|++++|+.+.+
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~-G~----~~V~v~~r~~~ra 219 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEK-GV----RKITVANRTLERA 219 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHC-CC----CeEEEEeCCHHHH
Confidence 347999999999999999999877 61 3799999987644
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.021 Score=54.45 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||.|+|+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~-Gv----~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGA-GV----GTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CeEEEecCCE
Confidence 6899999999999999999998 83 5899999884
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0095 Score=60.77 Aligned_cols=78 Identities=24% Similarity=0.318 Sum_probs=49.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|..|..-+..++.-.+ -.+|.+|+|+++..++ +.+.++. + +
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~----i~~v~v~~r~~~~~~~-----~~~~~~~--------------~-~----- 177 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRP----IKEVRVYSRSPERAEA-----FAARLRD--------------L-G----- 177 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS------SEEEEE-SSHHHHHH-----HHHHHHC--------------C-C-----
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCC----ceEEEEEccChhHHHH-----HHHhhcc--------------c-c-----
Confidence 44689999999999998888876422 1589999999876553 2211111 0 1
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~ 172 (465)
..+....|.++++.+||+|+.|||+..
T Consensus 178 ------------------------~~v~~~~~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 178 ------------------------VPVVAVDSAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp ------------------------TCEEEESSHHHHHTTSSEEEE----SS
T ss_pred ------------------------ccceeccchhhhcccCCEEEEccCCCC
Confidence 146678899999999999999999876
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.017 Score=57.85 Aligned_cols=67 Identities=22% Similarity=0.198 Sum_probs=47.8
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|-++-.|-.-.--+..|+...+. ....+++.|+|+|.+|.+++..|+.. |. .+|++++|+.++++
T Consensus 95 ~~g~l~G~NTD~~G~~~~l~~~~~~-~~~~k~vlVlGaGg~a~ai~~aL~~~-g~----~~V~v~~R~~~~a~ 161 (278)
T PRK00258 95 EDGRLIGDNTDGIGFVRALEERLGV-DLKGKRILILGAGGAARAVILPLLDL-GV----AEITIVNRTVERAE 161 (278)
T ss_pred eCCEEEEEcccHHHHHHHHHhccCC-CCCCCEEEEEcCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHH
Confidence 4666666676655555555542221 22346899999999999999999987 62 58999999976554
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0062 Score=61.69 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=29.3
Q ss_pred CceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaG-amGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
-++|+|||.| .||..+|..|.++ | +.|++|.+.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~-g-----atVtv~~~~ 192 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQA-H-----CSVTVVHSR 192 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-C-----CEEEEECCC
Confidence 4799999996 9999999999998 7 899999654
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.012 Score=61.87 Aligned_cols=110 Identities=16% Similarity=0.261 Sum_probs=66.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.+|..+|..++...| .+|..|++....... . .....+ ..+...
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fG-----m~V~~~d~~~~~~~~----~---~~~~~~----------~~l~~~---- 217 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFK-----MNLIYYDLYQSTRLE----K---FVTAYG----------QFLKAN---- 217 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-----CEEEEECCCCchhhh----h---hhhhhc----------cccccc----
Confidence 34799999999999999999864435 789999886531000 0 000000 000000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
+. ....+....++++++..||+|++++| ...++.++. +.-..+++ ++++|.++-|
T Consensus 218 ~~--------------------~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~---ga~lIN~aRG 274 (386)
T PLN02306 218 GE--------------------QPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKK---EAVLVNASRG 274 (386)
T ss_pred cc--------------------ccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCC---CeEEEECCCc
Confidence 00 00012223589999999999999999 446666653 23344565 6889988877
Q ss_pred c
Q 012349 200 V 200 (465)
Q Consensus 200 i 200 (465)
=
T Consensus 275 ~ 275 (386)
T PLN02306 275 P 275 (386)
T ss_pred c
Confidence 3
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0084 Score=60.84 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=57.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|..|.+-+..++.-.. -.+|.+|+|++++.++ +.+.+.+. + +
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~----i~~v~v~~r~~~~a~~-----f~~~~~~~-------------~-~----- 167 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYN----PKRIRVYSRNFDHARA-----FAERFSKE-------------F-G----- 167 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCC----CCEEEEECCCHHHHHH-----HHHHHHHh-------------c-C-----
Confidence 55899999999999998888875311 2689999999876553 22112110 0 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE 172 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~ 172 (465)
..+.+.+++++++.+||+|+-+|++..
T Consensus 168 ------------------------~~v~~~~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 168 ------------------------VDIRPVDNAEAALRDADTITSITNSDT 194 (301)
T ss_pred ------------------------CcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 035667889999999999999999864
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0097 Score=60.80 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=62.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.+|..+|..+..- | .+|..|+|.... ..
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~f-g-----m~V~~~~~~~~~---------------------------~~-------- 185 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAF-G-----MRVLIGQLPGRP---------------------------AR-------- 185 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhC-C-----CEEEEECCCCCc---------------------------cc--------
Confidence 347999999999999999998644 5 788888764210 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
.. ..++++.++.||+|++++|- ..++.++. +.-..+++ ++++|.+.-|
T Consensus 186 --------------------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~---ga~lIN~aRG 235 (317)
T PRK06487 186 --------------------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP---GALLINTARG 235 (317)
T ss_pred --------------------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC---CeEEEECCCc
Confidence 00 12577889999999999994 46666653 23344565 6889988877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 236 ~v 237 (317)
T PRK06487 236 GL 237 (317)
T ss_pred cc
Confidence 33
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.014 Score=59.58 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+..+++|||+|..|..-+..++.- - +-.+|++|+|++++.++ +.+.+++ . +
T Consensus 126 ~d~~~l~iiG~G~qA~~~~~a~~~v-~---~i~~v~v~~r~~~~a~~-----~~~~~~~--------------~-~---- 177 (315)
T PRK06823 126 QHVSAIGIVGTGIQARMQLMYLKNV-T---DCRQLWVWGRSETALEE-----YRQYAQA--------------L-G---- 177 (315)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhc-C---CCCEEEEECCCHHHHHH-----HHHHHHh--------------c-C----
Confidence 3568999999999999888887754 1 12689999999886653 2111110 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEe
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~ 196 (465)
.++.+.++.++++.+||+|+.||++.. .+++ ..++++ ++.|.++
T Consensus 178 -------------------------~~v~~~~~~~~av~~ADIV~taT~s~~--P~~~--~~~l~~---G~hi~~i 221 (315)
T PRK06823 178 -------------------------FAVNTTLDAAEVAHAANLIVTTTPSRE--PLLQ--AEDIQP---GTHITAV 221 (315)
T ss_pred -------------------------CcEEEECCHHHHhcCCCEEEEecCCCC--ceeC--HHHcCC---CcEEEec
Confidence 035567889999999999999999764 3332 134555 5655443
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.013 Score=60.16 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=64.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|++|..+|..+....| .+|..|++.... +. ...
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fg-----m~V~~~~~~~~~-~~--------------------------~~~----- 186 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFN-----MPILYNARRHHK-EA--------------------------EER----- 186 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCC-----CEEEEECCCCch-hh--------------------------HHh-----
Confidence 34799999999999999999862325 678888775321 00 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
..... .++++.++.||+|++++|- ..++.++. +.-..+++ ++++|.++-|
T Consensus 187 ------------------------~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~---ga~lIN~aRG 238 (323)
T PRK15409 187 ------------------------FNARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKS---SAIFINAGRG 238 (323)
T ss_pred ------------------------cCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCC---CeEEEECCCc
Confidence 01222 3788889999999999994 45666652 23344565 6889988887
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 239 ~v 240 (323)
T PRK15409 239 PV 240 (323)
T ss_pred cc
Confidence 33
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0086 Score=63.47 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=36.2
Q ss_pred HhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 32 ~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
..+.++.. ...+|+|||+|.||..++..|... |. .+|++|+|+.+.+
T Consensus 171 a~~~~~~l--~~~~VlViGaG~iG~~~a~~L~~~-G~----~~V~v~~rs~~ra 217 (417)
T TIGR01035 171 AERIFGSL--KGKKALLIGAGEMGELVAKHLLRK-GV----GKILIANRTYERA 217 (417)
T ss_pred HHHHhCCc--cCCEEEEECChHHHHHHHHHHHHC-CC----CEEEEEeCCHHHH
Confidence 33445433 337899999999999999999887 62 5899999987643
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0096 Score=62.72 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=42.4
Q ss_pred hHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 29 ~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+..++.++.. ...|+.|||+|-||...|..|+.+ |. ..|++.+|+.+++..
T Consensus 166 v~lA~~~~~~L--~~~~vlvIGAGem~~lva~~L~~~-g~----~~i~IaNRT~erA~~ 217 (414)
T COG0373 166 VELAKRIFGSL--KDKKVLVIGAGEMGELVAKHLAEK-GV----KKITIANRTLERAEE 217 (414)
T ss_pred HHHHHHHhccc--ccCeEEEEcccHHHHHHHHHHHhC-CC----CEEEEEcCCHHHHHH
Confidence 45667888754 347899999999999999999998 73 689999999876553
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.037 Score=49.41 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=29.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||.|+|+|.+|+.++..|++. |. .+++++|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv----~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GV----GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC----CEEEEEcCCC
Confidence 689999999999999999998 82 4799998874
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=60.26 Aligned_cols=92 Identities=21% Similarity=0.300 Sum_probs=63.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++++|||.|.+|.++|..+. ..| .+|..|+|.+. -+. .. ..
T Consensus 146 gktvGIiG~GrIG~avA~r~~-~Fg-----m~v~y~~~~~~-~~~----------~~-------------~~-------- 187 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLK-GFG-----MKVLYYDRSPN-PEA----------EK-------------EL-------- 187 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCC-----CEEEEECCCCC-hHH----------Hh-------------hc--------
Confidence 479999999999999999998 425 78999998763 110 00 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+..... +++.++.+|+|++.+|. ..++-++. +....+++ +.++|.+.-|=
T Consensus 188 ------------------------~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~---ga~lVNtaRG~ 239 (324)
T COG1052 188 ------------------------GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKP---GAILVNTARGG 239 (324)
T ss_pred ------------------------Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCC---CeEEEECCCcc
Confidence 122333 77889999999999995 46666653 23344565 67888888773
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=57.49 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|+|+|.+|+.+|..|++. |. .+++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~-Gv----g~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAA-GV----GKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCE
Confidence 5899999999999999999998 83 5899998875
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.012 Score=60.22 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=32.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+..+|+|||+|.+|...+..++...+ -..|.+|+|++++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~----i~~v~v~~r~~~~~~ 168 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFD----LEEVRVYDRTKSSAE 168 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCC----ceEEEEECCCHHHHH
Confidence 45799999999999999988875412 157999999987554
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.021 Score=61.20 Aligned_cols=66 Identities=23% Similarity=0.161 Sum_probs=47.1
Q ss_pred ccccccCCCe--eEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 8 VNDSLSSNGL--IHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 8 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||||...... .|-|.-|+ +|-+.|..+.. ..-++|+|+|.|.+|..+|..+... | .+|+++++++.
T Consensus 221 vnds~~K~~fDn~yGtgqS~---~d~i~r~t~i~-LaGKtVvViGyG~IGr~vA~~aka~-G-----a~VIV~e~dp~ 288 (477)
T PLN02494 221 VNDSVTKSKFDNLYGCRHSL---PDGLMRATDVM-IAGKVAVICGYGDVGKGCAAAMKAA-G-----ARVIVTEIDPI 288 (477)
T ss_pred EcChhhhhhhhccccccccH---HHHHHHhcCCc-cCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCch
Confidence 6777654322 23333444 77777776552 2346899999999999999999766 6 78999998874
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.027 Score=57.12 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=28.9
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 48 IIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|||+|.+|+++|..|+.. +.+ .++.|+|++++.++
T Consensus 1 iIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~ 35 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ-GIA---DEIVLIDINKDKAE 35 (299)
T ss_pred CCCcCHHHHHHHHHHHhc-CCC---CEEEEEeCCCChhh
Confidence 799999999999999887 642 47999999876544
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.039 Score=46.20 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=53.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|+|+|..|.+++..+-+..|+ .-+.+++.+++..-+ ...
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~----~i~~~~dv~~~~~G~-------------------------~i~------- 46 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGF----GIVAVFDVDPEKIGK-------------------------EIG------- 46 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCE----CEEEEEEECTTTTTS-------------------------EET-------
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCC----CCEEEEEcCCCccCc-------------------------EEC-------
Confidence 46899999999999998655554341 236677887753211 111
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHH
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~ 182 (465)
.+.+..+.+++.+. .|+-+++||+....+++.++..
T Consensus 47 ------------------------gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~~ 84 (96)
T PF02629_consen 47 ------------------------GIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELVE 84 (96)
T ss_dssp ------------------------TEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHHH
T ss_pred ------------------------CEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 23333445554443 9999999999999998888765
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.012 Score=59.95 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=62.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.+|..+|..+..- | .+|..|++... . ...
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~f-g-----~~V~~~~~~~~--~--------------------------~~~------ 185 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQAL-G-----MKVLYAEHKGA--S--------------------------VCR------ 185 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcC-C-----CEEEEECCCcc--c--------------------------ccc------
Confidence 347999999999999999988643 5 68888865421 0 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
.. ..++++++..||+|++++| ...++.++. +.-..+++ ++++|.+.-|
T Consensus 186 --------------------------~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~---ga~lIN~aRG 235 (314)
T PRK06932 186 --------------------------EG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKP---TAFLINTGRG 235 (314)
T ss_pred --------------------------cc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCC---CeEEEECCCc
Confidence 00 1357888999999999999 445666552 23334565 6889988887
Q ss_pred ccc
Q 012349 200 VEA 202 (465)
Q Consensus 200 i~~ 202 (465)
=..
T Consensus 236 ~~V 238 (314)
T PRK06932 236 PLV 238 (314)
T ss_pred ccc
Confidence 433
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.017 Score=59.63 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|.+|+.+|..|++. |. ..++++|++.
T Consensus 25 ~~VlIiG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRA-GI----GKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCc
Confidence 6899999999999999999999 82 3899999985
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.02 Score=58.58 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=27.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~ 82 (465)
++||+|+|+|+||...+..+.++.+ .+ |-+|++++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd-----~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPD-----MELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCC-----cEEEEEEcCCc
Confidence 4799999999999999988876522 44 44678875
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.013 Score=59.44 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=28.4
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~ 79 (465)
-++|+||| +|.||..+|..|.++ | +.|++|.
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~-g-----~tVtv~~ 189 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAA-N-----ATVTIAH 189 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhC-C-----CEEEEEC
Confidence 47999999 999999999999988 7 8999994
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.021 Score=53.14 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=32.8
Q ss_pred HHHhhhhcCCCCCCceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 30 DELRRLMGKAEGDPLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 30 ~~~~~~~~~~~~~~mkIaIIGaGam-GsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
+.++..++.. ...+|.|||+|-| |..+|..|.+. | .+|++.+|+
T Consensus 33 ~l~~~~~~~l--~gk~vlViG~G~~~G~~~a~~L~~~-g-----~~V~v~~r~ 77 (168)
T cd01080 33 ELLKRYGIDL--AGKKVVVVGRSNIVGKPLAALLLNR-N-----ATVTVCHSK 77 (168)
T ss_pred HHHHHcCCCC--CCCEEEEECCcHHHHHHHHHHHhhC-C-----CEEEEEECC
Confidence 3444454333 4479999999987 88899999988 6 678888765
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.046 Score=54.89 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=46.0
Q ss_pred CCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+|-++-.|-.-.-=+.-|++.-.......+++.|||+|.+|.+++..|++. |. .+|++++|+.++.+.
T Consensus 97 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~-G~----~~i~I~nRt~~ka~~ 164 (282)
T TIGR01809 97 NGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALASL-GV----TDITVINRNPDKLSR 164 (282)
T ss_pred CCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHHc-CC----CeEEEEeCCHHHHHH
Confidence 565555565544444455542211112346899999999999999999987 72 579999999875543
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.032 Score=57.73 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=32.4
Q ss_pred CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+.++...++|+||+|+|.....++...+.. . +..||.++.-+-.
T Consensus 61 ~~~~~~~~~DvVf~alP~~~s~~~~~~~~~---~---G~~VIDlS~~fR~ 104 (346)
T TIGR01850 61 DEEEIAEDADVVFLALPHGVSAELAPELLA---A---GVKVIDLSADFRL 104 (346)
T ss_pred CHHHhhcCCCEEEECCCchHHHHHHHHHHh---C---CCEEEeCChhhhc
Confidence 444544689999999999988888777653 2 5678888866543
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.027 Score=57.06 Aligned_cols=43 Identities=23% Similarity=0.226 Sum_probs=33.5
Q ss_pred HHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 154 LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 154 l~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+++.++++|+||.++-+...+.++..+.... +.++|+..-|++
T Consensus 102 l~~li~~~DvV~d~tDn~esR~L~~~~~~~~-----~k~~I~aalGfd 144 (307)
T cd01486 102 LEELIKDHDVIFLLTDSRESRWLPTLLSAAK-----NKLVINAALGFD 144 (307)
T ss_pred HHHHHhhCCEEEECCCCHHHHHHHHHHHHHh-----CCcEEEEEeccc
Confidence 5577899999999999999998888887543 346777666664
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.034 Score=54.26 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=40.6
Q ss_pred HHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 27 ERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 27 ~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+|.+.=++++|...+. ..||+|+|+|..|+.++..|+.. |. .+++++|.+.-...
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~-Gv----g~i~lvD~D~ve~s 65 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAA-GV----GRILLIDEQTPELS 65 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCccChh
Confidence 4666555566543332 36899999999999999999998 83 57999988764333
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.068 Score=56.48 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=44.5
Q ss_pred ccccccCCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||||..... .+..-|.=+.-+|.+.+..+.. ...++|+|+|+|.+|..+|..+... | .+|+++++++.
T Consensus 162 vnds~~K~~-fDn~yg~g~s~~~~i~r~t~~~-l~Gk~VvViG~G~IG~~vA~~ak~~-G-----a~ViV~d~dp~ 229 (406)
T TIGR00936 162 VNDAYTKSL-FDNRYGTGQSTIDGILRATNLL-IAGKTVVVAGYGWCGKGIAMRARGM-G-----ARVIVTEVDPI 229 (406)
T ss_pred ecchhhchh-hhcccccchhHHHHHHHhcCCC-CCcCEEEEECCCHHHHHHHHHHhhC-c-----CEEEEEeCChh
Confidence 566655432 1211122244456555554321 2336999999999999999998866 6 78999998875
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.045 Score=56.23 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=31.4
Q ss_pred EecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 150 VVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 150 ~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+.+|+++.+. +.|+|++|+|+....+++.+... . +..|+ +-|-+..
T Consensus 52 ~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~---a---GkhVl-~EKPla~ 99 (346)
T PRK11579 52 VVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALE---A---GKHVV-VDKPFTV 99 (346)
T ss_pred eeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---C---CCeEE-EeCCCCC
Confidence 4578888775 57999999999877776666543 2 33443 6776654
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.072 Score=56.43 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=45.5
Q ss_pred ccccccCCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 8 VNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
||||...... +..-|.=+.-+|.+.+..+.. ..-.+|+|+|+|.+|..++..+... | .+|+++++++.+
T Consensus 169 vnds~~K~~~-dn~~g~g~s~~~~i~r~t~~~-l~GktVvViG~G~IG~~va~~ak~~-G-----a~ViV~d~d~~R 237 (413)
T cd00401 169 VNDSVTKSKF-DNLYGCRESLIDGIKRATDVM-IAGKVAVVAGYGDVGKGCAQSLRGQ-G-----ARVIVTEVDPIC 237 (413)
T ss_pred ecchhhcccc-cccchhchhhHHHHHHhcCCC-CCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECChhh
Confidence 5666544321 211122222357777766542 2236899999999999999988776 7 789999988754
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.067 Score=56.86 Aligned_cols=48 Identities=19% Similarity=0.127 Sum_probs=35.9
Q ss_pred hHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 29 LDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 29 ~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++-+++.-+.. ..-++|+|+|+|.+|..+|..+... | .+|+++++++.
T Consensus 199 ~~ai~rat~~~-l~Gk~VlViG~G~IG~~vA~~lr~~-G-----a~ViV~d~dp~ 246 (425)
T PRK05476 199 LDGIKRATNVL-IAGKVVVVAGYGDVGKGCAQRLRGL-G-----ARVIVTEVDPI 246 (425)
T ss_pred HHHHHHhccCC-CCCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCch
Confidence 45455443221 2336899999999999999999877 7 78999999875
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.036 Score=58.14 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=56.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|..|..-...++.- - .+-.+|.+|+|++++.++ +.+.+.+ .+++.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v-~--~~i~~V~v~~r~~~~a~~-----f~~~~~~-------------~~~~~---- 208 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAV-C--PGIDTIKIKGRGQKSLDS-----FATWVAE-------------TYPQI---- 208 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-c--CCccEEEEECCCHHHHHH-----HHHHHHH-------------hcCCC----
Confidence 557899999999999998888763 1 001589999999876553 2111211 01110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~ 171 (465)
.++.+.++.++++.+||+|+.||++.
T Consensus 209 ------------------------~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 209 ------------------------TNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred ------------------------ceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 02566789999999999999999763
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.053 Score=63.42 Aligned_cols=43 Identities=12% Similarity=0.055 Sum_probs=31.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCC---------CCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLR---------DKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~---------~~~~V~l~~r~~~~~~ 86 (465)
++||+|||+|.||...+..|++. .... +...|.+.+++.+.++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~ 620 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAK 620 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHH
Confidence 56899999999999999999976 3110 0013888888765443
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.056 Score=53.82 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=54.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+||+|||+|++|..++..+... +. . +.+ +.+++|+.+..++ +..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~-~~-~-~~~l~~V~~~~~~~~~~--------------------------~~~----- 47 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLAD-AA-Q-PCQLAALTRNAADLPPA--------------------------LAG----- 47 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcC-CC-C-ceEEEEEecCCHHHHHH--------------------------hhc-----
Confidence 37999999999999999998653 21 0 133 4455655432221 100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCcchHHHHHHHHHH
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~ea-l~~aDiVIlaVps~~l~~vl~~l~~ 182 (465)
...+.+|+++. ..++|+|+.|-.++.+++..+.+..
T Consensus 48 -------------------------~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~iL~ 84 (267)
T PRK13301 48 -------------------------RVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGCLT 84 (267)
T ss_pred -------------------------cCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence 11234567774 5789999999999999998888754
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.058 Score=51.99 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|.+|+.+|..|++. |. .+++++|.+.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~-Gv----g~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARS-GV----GNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 6899999999999999999998 83 5799999984
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.084 Score=48.84 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 27 ~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.-+|-++|-.+..-. -++++|+|.|..|..+|..|... | ..|+++++++-
T Consensus 8 S~~d~i~r~t~~~l~-Gk~vvV~GYG~vG~g~A~~lr~~-G-----a~V~V~e~DPi 57 (162)
T PF00670_consen 8 SLVDGIMRATNLMLA-GKRVVVIGYGKVGKGIARALRGL-G-----ARVTVTEIDPI 57 (162)
T ss_dssp HHHHHHHHHH-S--T-TSEEEEE--SHHHHHHHHHHHHT-T------EEEEE-SSHH
T ss_pred hHHHHHHhcCceeeC-CCEEEEeCCCcccHHHHHHHhhC-C-----CEEEEEECChH
Confidence 345566655543222 25899999999999999999877 7 89999999883
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.053 Score=56.30 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|+|+|..|+.++..|+.. |. .+++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~-Gv----g~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGA-GV----GHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 6899999999999999999998 83 5899999875
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.11 Score=51.73 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=68.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..-||+|+|+|++|.|.|..+..+ |. . .++.++|-++++++- + .+.-+|. ..+++
T Consensus 19 ~~~KItVVG~G~VGmAca~siL~k-~L-a--del~lvDv~~dklkG---E----~MDLqH~--------s~f~~------ 73 (332)
T KOG1495|consen 19 KHNKITVVGVGQVGMACAISILLK-GL-A--DELVLVDVNEDKLKG---E----MMDLQHG--------SAFLS------ 73 (332)
T ss_pred cCceEEEEccchHHHHHHHHHHHh-hh-h--hceEEEecCcchhhh---h----hhhhccc--------ccccc------
Confidence 457999999999999999988776 52 1 478999998865432 1 1221110 01111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~l~ 185 (465)
.+++.+..|.. +-.+++++|+..-.. -++.++..+..| .
T Consensus 74 -----------------------~~~V~~~~Dy~-~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-S 128 (332)
T KOG1495|consen 74 -----------------------TPNVVASKDYS-VSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-S 128 (332)
T ss_pred -----------------------CCceEecCccc-ccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-C
Confidence 13577777775 357899999987432 133344444444 2
Q ss_pred ccCCCCEEEEeeccccc
Q 012349 186 ERITVPVIISLAKGVEA 202 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~~ 202 (465)
+ +++++.++|-++.
T Consensus 129 p---d~~llvvSNPVDi 142 (332)
T KOG1495|consen 129 P---DCILLVVSNPVDI 142 (332)
T ss_pred C---CeEEEEecCchHH
Confidence 3 6888888887754
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.053 Score=47.01 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=30.1
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 159 ~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.++|+||+|+|.....+++..+.+.+.+ ++++|.++.-+
T Consensus 64 ~~~DvV~~~~~~~~~~~~~~~~~~~~~~---g~~viD~s~~~ 102 (122)
T smart00859 64 LAVDIVFLALPHGVSKEIAPLLPKAAEA---GVKVIDLSSAF 102 (122)
T ss_pred cCCCEEEEcCCcHHHHHHHHHHHhhhcC---CCEEEECCccc
Confidence 4789999999999998888766555555 67888777444
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.084 Score=56.02 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=51.0
Q ss_pred CceEEEECccHHHHHHH--HHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFT--AMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA--~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+||+|||+|+.++.-- ..+.+. -.+. ..++.|+|.+++..+.+. .+.+. ++...
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~-e~l~-~~el~L~Did~~r~~~i~------~~~~~------------~v~~~--- 59 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLART-EELP-VRELALYDIDEERLKIIA------ILAKK------------LVEEA--- 59 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcC-ccCC-cceEEEEeCCHHHHHHHH------HHHHH------------HHHhh---
Confidence 47999999999877632 222222 1122 258999999987655211 11110 11110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps 170 (465)
+ . + ..+..|+|.++|+.+||+|+.++-.
T Consensus 60 -g---~-----------------~-~kv~~ttd~~eAl~gAdfVi~~~rv 87 (442)
T COG1486 60 -G---A-----------------P-VKVEATTDRREALEGADFVITQIRV 87 (442)
T ss_pred -C---C-----------------C-eEEEEecCHHHHhcCCCEEEEEEee
Confidence 0 0 0 1477899999999999999998854
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.037 Score=50.72 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=31.3
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 46 IaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|+|+|+ |.+|..++..|.+. | ++|+...|++++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~-----~~V~~~~R~~~~~~ 36 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-G-----HEVTALVRSPSKAE 36 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----SEEEEEESSGGGHH
T ss_pred eEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCchhcc
Confidence 789997 99999999999999 7 99999999986443
|
... |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.075 Score=50.59 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|+|+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 20 s~VlviG~gglGsevak~L~~~-GV----g~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLA-GI----DSITIVDHRL 53 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCc
Confidence 6899999999999999999999 84 6899999874
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.066 Score=53.93 Aligned_cols=62 Identities=15% Similarity=0.076 Sum_probs=44.3
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|-++-.|-.-.-=..-|++.+.. ...+++.|+|+|..|.+++..|++. |. .+|++++|+.
T Consensus 99 ~~g~l~G~NTD~~G~~~~l~~~~~~--~~~k~vlI~GAGGagrAia~~La~~-G~----~~V~I~~R~~ 160 (289)
T PRK12548 99 DDGKLTGHITDGLGFVRNLREHGVD--VKGKKLTVIGAGGAATAIQVQCALD-GA----KEITIFNIKD 160 (289)
T ss_pred ECCEEEEEecCHHHHHHHHHhcCCC--cCCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCc
Confidence 4676666666555555555543321 2336899999999999999999988 71 3599999986
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.098 Score=52.31 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=44.1
Q ss_pred hHHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.++|.+...+++|..... ..+|+|+|+|.+|+.+|..|++. |. .+++++|.+.-.
T Consensus 9 ~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~-GV----g~itLiD~D~V~ 66 (268)
T PRK15116 9 WRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALART-GI----GAITLIDMDDVC 66 (268)
T ss_pred HHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCEec
Confidence 457888888888754332 36899999999999999999999 73 589999987533
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.059 Score=58.22 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=46.8
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|-++-.|-.-.-=+.-||+.- . ....++++|+|+|.+|.+++..|++. | .+|++++|+.+.++
T Consensus 305 ~~g~l~G~NTD~~G~~~~l~~~~-~-~~~~k~vlIiGaGgiG~aia~~L~~~-G-----~~V~i~~R~~~~~~ 369 (477)
T PRK09310 305 RNGKIEGYNTDGEGLFSLLKQKN-I-PLNNQHVAIVGAGGAAKAIATTLARA-G-----AELLIFNRTKAHAE 369 (477)
T ss_pred eCCEEEEEecCHHHHHHHHHhcC-C-CcCCCEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 46766666665555555555421 1 22346899999999999999999988 7 78999999876544
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.043 Score=51.61 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=32.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+++.|+|+ |.+|.+++..|++. | ++|++++|+.++++
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~-g-----~~V~l~~R~~~~~~ 66 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE-G-----ARVVLVGRDLERAQ 66 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 478999996 99999999999988 7 79999999876544
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.082 Score=55.26 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 42 ~~VliiG~GglG~~v~~~La~~-Gv----g~i~ivD~D~ 75 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASA-GV----GTITLIDDDT 75 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CEEEEEeCCE
Confidence 6899999999999999999998 83 5899999874
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.069 Score=46.48 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=50.9
Q ss_pred ceEEEEC----ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 44 LRIVGVG----AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 44 mkIaIIG----aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
++|+||| .+.+|..+...|.++ | ++|+.++.....++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~-G-----~~v~~Vnp~~~~i~--------------------------------- 41 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA-G-----YEVYPVNPKGGEIL--------------------------------- 41 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT-T------EEEEESTTCSEET---------------------------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC-C-----CEEEEECCCceEEC---------------------------------
Confidence 4799999 699999999999987 7 78877755432111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY 183 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~ 183 (465)
.+.+..+++|.-...|++++++|+..+.++++++...
T Consensus 42 ---------------------------G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~ 78 (116)
T PF13380_consen 42 ---------------------------GIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAAL 78 (116)
T ss_dssp ---------------------------TEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHH
T ss_pred ---------------------------cEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHc
Confidence 2334455555236789999999999999999998764
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.043 Score=57.58 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=29.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|||+|+|| |..|..+...|.++ . .++|+++.++.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h-P----~~el~~l~s~~ 73 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH-P----DFEITVMTADR 73 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC-C----CCeEEEEEChh
Confidence 4579999998 99999999999876 2 26888887754
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.046 Score=56.16 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=33.6
Q ss_pred CHHHHhcCCCEEEEecCc-chHHHHHHH-HHHhhhccCCCCEEEEeeccc
Q 012349 153 NLQEAVWDADIVINGLPS-TETKEVFEE-ISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps-~~l~~vl~~-l~~~l~~~~~~~ivIs~~kGi 200 (465)
|.++.+..+|+|+++.|- ..++.++.+ +...+++ +.++|++.-|=
T Consensus 210 d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~---g~vlVN~aRG~ 256 (336)
T KOG0069|consen 210 DIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKD---GAVLVNTARGA 256 (336)
T ss_pred CHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCC---CeEEEeccccc
Confidence 455678899999999995 577777744 5556666 67888888773
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.066 Score=51.20 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=30.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
..++|.|||+|.+|...+..|.+. | ++|++++++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~-g-----a~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY-G-----AHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEcCC
Confidence 346999999999999999999988 7 899999865
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.1 Score=52.95 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=27.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~ 83 (465)
++||+|||+|.+|+.+...+.+. . +.+ +.+++++++
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~-~----~velvAVvdid~e 40 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRS-E----HLEPGAMVGIDPE 40 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcC-C----CcEEEEEEeCChh
Confidence 57999999999999988777754 2 134 457788764
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.17 Score=51.15 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=43.8
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|-++-.|-.-.-=+.-|+..- .....+++.|+|+|..+.+++..|+.. |. .+|++++|+++
T Consensus 97 ~~g~l~G~NTD~~Gf~~~l~~~~--~~~~~k~vlvlGaGGaarAi~~~l~~~-g~----~~i~i~nRt~~ 159 (288)
T PRK12749 97 DDGYLRGYNTDGTGHIRAIKESG--FDIKGKTMVLLGAGGASTAIGAQGAIE-GL----KEIKLFNRRDE 159 (288)
T ss_pred cCCEEEEEecCHHHHHHHHHhcC--CCcCCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCcc
Confidence 46767666655544444444321 112336899999999999999999887 62 58999999864
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.036 Score=57.24 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||.|||+|.+|+.+|..|+.. |. .+++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRA-GV----GKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCc
Confidence 6899999999999999999999 82 4899999975
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.08 Score=53.65 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=61.4
Q ss_pred CCceEEEECccHHH-HHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamG-salA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+++||+|||+|.++ ...+..+... +.. -.-|-+++++++.++.. -+. |
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~-~~~--~~~vav~d~~~~~a~~~--------a~~-------------~------- 50 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAAL-GGG--LELVAVVDRDPERAEAF--------AEE-------------F------- 50 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhC-CCc--eEEEEEecCCHHHHHHH--------HHH-------------c-------
Confidence 46899999999655 4577777665 300 03477788888654421 000 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
++ ...+|+++.+.+ .|+|++|+|+....++..... .. +.. |.|-
T Consensus 51 --------------------------~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL---~a---Gkh-Vl~E 97 (342)
T COG0673 51 --------------------------GIAKAYTDLEELLADPDIDAVYIATPNALHAELALAAL---EA---GKH-VLCE 97 (342)
T ss_pred --------------------------CCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHH---hc---CCE-EEEc
Confidence 11 356778887765 599999999988777764432 33 333 4577
Q ss_pred cccccc
Q 012349 198 KGVEAE 203 (465)
Q Consensus 198 kGi~~~ 203 (465)
|-+...
T Consensus 98 KPla~t 103 (342)
T COG0673 98 KPLALT 103 (342)
T ss_pred CCCCCC
Confidence 777653
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.067 Score=52.66 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..||+|||+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GV----GTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCE
Confidence 36899999999999999999998 83 5899998875
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.095 Score=52.87 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=38.1
Q ss_pred hHHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+||...=..++|...+. ..+|.|||+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~a-GV----G~i~lvD~D~ 61 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARL-GI----GKFTIADFDV 61 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHh-CC----CeEEEEeCCC
Confidence 455554333334333322 25899999999999999999999 84 5899999875
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.1 Score=51.19 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=31.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.||+|+|+|.+|+.+|..|++. |. .+++++|.+.-..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~-Gv----g~i~lvD~D~ve~ 61 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAA-GV----GNLTLLDFDTVSL 61 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHc-CC----CEEEEEeCCcccc
Confidence 6899999999999999999998 83 5799998876433
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.087 Score=47.25 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=62.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+.+||.+||+| .|..+|..|++. | ++|+.+|.+++.++.++.. ....+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~-G-----~~ViaIDi~~~aV~~a~~~---------------------~~~~v~--- 64 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKES-G-----FDVIVIDINEKAVEKAKKL---------------------GLNAFV--- 64 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHHh---------------------CCeEEE---
Confidence 34799999999 999999999988 7 9999999999866542110 011110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE 186 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~ 186 (465)
. .+ +..++ +.-+++|+|.-.=|+..+..-+-+++.-+..
T Consensus 65 d------------------------Dl-f~p~~-~~y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 65 D------------------------DL-FNPNL-EIYKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred C------------------------cC-CCCCH-HHHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 0 01 22333 3468899999999998888888888876654
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.087 Score=54.21 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=59.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+|||+|+|| |..|..+...|+++ |. +..++....++...-+. ..+.+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~-~h--p~~~l~~l~s~~~~g~~------------------------l~~~g~---- 49 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEER-NF--PVDKLRLLASARSAGKE------------------------LSFKGK---- 49 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CC--CcceEEEEEccccCCCe------------------------eeeCCc----
Confidence 479999997 99999999999886 50 01245666665421110 001100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+.+.+.....+.++|+||+|+|+...+++.+++.. . +..||.++.-+
T Consensus 50 -------------------------~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~~~~~---~---G~~VIDlS~~~ 97 (334)
T PRK14874 50 -------------------------ELKVEDLTTFDFSGVDIALFSAGGSVSKKYAPKAAA---A---GAVVIDNSSAF 97 (334)
T ss_pred -------------------------eeEEeeCCHHHHcCCCEEEECCChHHHHHHHHHHHh---C---CCEEEECCchh
Confidence 122221111345789999999999988888877643 3 46788777443
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.037 Score=57.64 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=29.7
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhh
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (465)
|.|+|+|.+|++++..|++. + .+ +|++.+|+.+.+++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~-~----~~~~v~va~r~~~~~~~ 38 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR-G----PFEEVTVADRNPEKAER 38 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT-T----CE-EEEEEESSHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC-C----CCCcEEEEECCHHHHHH
Confidence 78999999999999999988 4 14 89999999876554
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.088 Score=56.58 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.-++|+|+|.|.+|..+|..+... | .+|+++++++.
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~-G-----a~ViV~e~dp~ 288 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGF-G-----ARVVVTEIDPI 288 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCch
Confidence 346899999999999999999876 6 78999988864
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.095 Score=54.75 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
...+|+|||+|.+|...+..+... | .+|++++|+++..+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-G-----a~V~v~d~~~~~~~ 204 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-G-----ATVTILDINIDRLR 204 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHH
Confidence 456899999999999999999877 7 78999999876443
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.11 Score=53.74 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=21.6
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDS 65 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~ 65 (465)
+|+||+|+|| |..|..+...|.++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~ 27 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEER 27 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhC
Confidence 4589999998 99999999999975
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.1 Score=47.91 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
..++|.|||+|.+|...+..|.+. | ++|++++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~-g-----a~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT-G-----AFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcC
Confidence 347899999999999999999988 7 89999953
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.059 Score=54.24 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=27.8
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIW 78 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~ 78 (465)
-++|+|||. |.||..+|..|.++ | +.|++|
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~-g-----atVtv~ 188 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDK-N-----ATVTLT 188 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHC-C-----CEEEEE
Confidence 379999999 99999999999988 7 899999
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.12 Score=44.09 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=30.7
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
|.|+|.|.+|..++..|.+. + .+|++++++++.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~-----~~vvvid~d~~~~~~ 36 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-G-----IDVVVIDRDPERVEE 36 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-T-----SEEEEEESSHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-C-----CEEEEEECCcHHHHH
Confidence 67999999999999999987 5 689999999876654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.21 Score=50.33 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=25.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~ 83 (465)
+||+|||+|.||+.++..+.+. . +.+ +.+++++++
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~----~~elvaV~d~d~e 37 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-E----HLEMVAMVGIDPE 37 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-C----CcEEEEEEeCCcc
Confidence 6999999999999887777654 2 134 456777765
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.13 Score=53.88 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|..|+.++..|++. |. .+++|+|.+.
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~-GV----geI~LVD~D~ 210 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKT-PV----REIHLFDGDD 210 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHc-CC----CEEEEECCCE
Confidence 5899999999999999999999 83 5899998874
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.13 Score=53.01 Aligned_cols=154 Identities=13% Similarity=0.148 Sum_probs=93.6
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...+.|+.||.+.||.-++.-.+++ | +.|..|.|...++++. +.... +-.+
T Consensus 4 ~~~~digLiGLaVMGqnLiLN~~d~-G-----f~v~~yNRT~skvD~f--------lanea----------k~~~----- 54 (487)
T KOG2653|consen 4 TPKADIGLIGLAVMGQNLILNIADK-G-----FTVCAYNRTTSKVDEF--------LANEA----------KGTK----- 54 (487)
T ss_pred ccccchhhhhHhhhhhhhhhccccc-C-----ceEEEeccchHhHHHH--------HHHhh----------cCCc-----
Confidence 3457899999999999999999999 8 8999999998887752 21110 0011
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHH---HhcCCCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEe
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE---AVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISL 196 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~e---al~~aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~ 196 (465)
+.-..++++ -++..-.|++-|++ ..+..++++|.|++.+ +.+||--
T Consensus 55 ---------------------------i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~L~p~Lek---gDiIIDG 104 (487)
T KOG2653|consen 55 ---------------------------IIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEELVPYLEK---GDIIIDG 104 (487)
T ss_pred ---------------------------ccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHHHHhhcCC---CCEEEeC
Confidence 111233433 24667788888876 4688889999999987 5677654
Q ss_pred eccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHc
Q 012349 197 AKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265 (465)
Q Consensus 197 ~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~ 265 (465)
-|.--.++ ..+..+ +.+ .|. ..+=+|-+-.+|.++.-|+ .+.+++.+....++.+|+
T Consensus 105 GNs~y~dT-----~RR~~e-l~k-~Gi----lfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~ifq 161 (487)
T KOG2653|consen 105 GNSEYQDT-----ERRCRE-LAK-KGI----LFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIFQ 161 (487)
T ss_pred CcccCcch-----HHHHHH-HHh-cCc----EEEecCccCcccccccCCc-cCCCCChHHHHHHHHHHH
Confidence 44332221 111111 211 221 2233455555666654455 345566655566666665
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.052 Score=43.51 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
||+|||+|..|.-+|..|++. | .+|+++.+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-g-----~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-G-----KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-C-----cEEEEEeccchhh
Confidence 689999999999999999988 7 8999999988655
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.11 Score=57.57 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||.|+|+|..|+..|..|+.. |. .+++++|.+.
T Consensus 339 ~kVLIvGaGGLGs~VA~~La~~-GV----g~ItlVD~D~ 372 (664)
T TIGR01381 339 LKVLLLGAGTLGCNVARCLIGW-GV----RHITFVDNGK 372 (664)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCE
Confidence 6899999999999999999998 83 5788998764
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.1 Score=55.81 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=62.1
Q ss_pred CCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 42 ~~mkIaIIGa----GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
.+.+|+|||+ |.+|..+...|.+. |+ . .+|+.++.+.+. +.
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~-gf-~--g~v~~Vnp~~~~-----------------------------i~-- 50 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEG-GY-K--GKIYPVNPKAGE-----------------------------IL-- 50 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhC-CC-C--CcEEEECCCCCc-----------------------------cC--
Confidence 5678999999 88999999999877 61 1 245444433211 11
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
.+.+..++++.-...|+++++||+....++++++... . -..++.++
T Consensus 51 -----------------------------G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~l~e~~~~-g----v~~~vi~s 96 (447)
T TIGR02717 51 -----------------------------GVKAYPSVLEIPDPVDLAVIVVPAKYVPQVVEECGEK-G----VKGAVVIT 96 (447)
T ss_pred -----------------------------CccccCCHHHCCCCCCEEEEecCHHHHHHHHHHHHhc-C----CCEEEEEC
Confidence 1223344445445679999999999999999998753 2 13466688
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
.|+..
T Consensus 97 ~gf~e 101 (447)
T TIGR02717 97 AGFKE 101 (447)
T ss_pred CCccc
Confidence 88864
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.21 Score=51.69 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=27.0
Q ss_pred CeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHH
Q 012349 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 147 ~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~ 181 (465)
.+.+..+.++.+.++|+||.|+|+....+..+...
T Consensus 65 ~i~V~~~~~el~~~vDVVIdaT~~~~~~e~a~~~~ 99 (341)
T PRK04207 65 GIPVAGTIEDLLEKADIVVDATPGGVGAKNKELYE 99 (341)
T ss_pred ceEEcCChhHhhccCCEEEECCCchhhHHHHHHHH
Confidence 35566777777788999999999988777766544
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.21 Score=48.65 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=30.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~--~V~l~~r~~ 82 (465)
..+||.|+|+|.+|.++|..|.+. |. . +|++++|+.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~-G~----~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAA-GA----KPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHc-Cc----CcceEEEEeCCC
Confidence 346999999999999999999987 72 3 799999984
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.54 Score=48.04 Aligned_cols=238 Identities=16% Similarity=0.178 Sum_probs=133.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++.++.++|+|....-+|.-+..+ | +..+-+++|....- +++.+.++.+- ..++.+-. ..
T Consensus 3 ~m~~vLllGtGpvaIQlAv~l~~h-~----d~~lg~~~r~s~rs-----e~l~qala~~~---------ql~l~~q~-ea 62 (431)
T COG4408 3 NMLPVLLLGTGPVAIQLAVDLSAH-G----DARLGLYNRPSTRS-----ERLKQALALTP---------QLYLQGQG-EA 62 (431)
T ss_pred cccceeEeecCcHHHHHHHHHHhc-c----CceeeccCCCCchh-----HHHHHHHhcCC---------eEEEEecc-HH
Confidence 567899999999999999999888 6 26788999876543 34444454331 23333210 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHH-hhhccCCCCEEEEeeccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR-YWKERITVPVIISLAKGV 200 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~-~l~~~~~~~ivIs~~kGi 200 (465)
...+. ..+.+ -....|++++..+.+-+|+|||.+...+++++|.- .++. .+..++||-+ +
T Consensus 63 -hr~le------g~~~i---------d~~~kd~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~-vk~viLiSpt--f 123 (431)
T COG4408 63 -HRQLE------GSVTI---------DCYIKDLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQ-VKSVILISPT--F 123 (431)
T ss_pred -HHhhc------Cceeh---------hHHHhhHHHhhchhheEEEEeecHHHHHHHhcCCHhHhcc-ccEEEEeccc--c
Confidence 00000 00000 11346788888999999999999999999999843 3332 2123444443 3
Q ss_pred cccccccccCCCHHHHHHhHhCCCC-----------ccEEEEeCCchhhhhhccCceEEEEe---CChhHHHHHHHHHcC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPI-----------ENILYLGGPNIASEIYNKEYANARIC---GAEKWRKPLAKFLRR 266 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~-----------~~i~vlsGP~~a~ev~~g~~t~~~~~---~~~~~~~~l~~ll~~ 266 (465)
+.. ..++..+.+ +|... .++.--.-|+++---+-.+- +..+ ++...++.+..+|..
T Consensus 124 Gsn-------~lv~~~mnk-~~~daeViS~SsY~~dTk~id~~~p~~alTkavKkr--iYlgs~~~ns~~~e~l~~v~aq 193 (431)
T COG4408 124 GSN-------LLVQNLMNK-AGRDAEVISLSSYYADTKYIDAEQPNRALTKAVKKR--IYLGSQHGNSGSAEMLTAVLAQ 193 (431)
T ss_pred ccc-------HHHHHHHhh-hCCCceEEEeehhcccceeecccCcchHHHHHHhHh--eeeccCCCCChHHHHHHHHHHh
Confidence 322 122233322 23211 01111123555543332221 2222 245678899999999
Q ss_pred CCCeEEecCChHHHHHHHH--------HHHHHHHHHHhh--hccc-----C-CCcchHH--HHHHHHHHHHHHHHHHhCC
Q 012349 267 PHFTVWDNGDLVTHEVMGG--------LKNVYAIGAGMV--AALT-----N-ESATSKS--VYFAHCTSEMVFITHLLAE 328 (465)
Q Consensus 267 ~g~~v~~s~Di~gve~~ga--------lKNviAia~Gi~--~gl~-----~-g~~n~~a--~li~~~~~E~~~l~~a~G~ 328 (465)
.|+.+.+.+.....|-.+. +.|=.++.+=+. ..-+ + .++-+-+ .-|+..-.|+.++..++|.
T Consensus 194 ~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~v 273 (431)
T COG4408 194 HGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGV 273 (431)
T ss_pred cCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999888776433 344444433221 0011 1 1222221 2355667788999999987
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.091 Score=55.28 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..||+|||+|..|+.++..|+.. |. ..++++|.+.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~-Gv----g~l~lvD~D~ 72 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAA-GI----GRIGIVDFDV 72 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCE
Confidence 36899999999999999999999 83 5799998875
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.11 Score=56.92 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=34.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.-+|.|+|+|.+|..++..|.++ | ++|.+++.|++++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g-----~~vvvId~d~~~~~~ 455 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-G-----IPLVVIETSRTRVDE 455 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 35799999999999999999988 7 899999999887664
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.26 Score=49.68 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=48.4
Q ss_pred CCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+|-++-.|-.-.-=+.-|++.-.-......+|+|+|||..+.+++..|++. |. .++++++|+.++.++
T Consensus 98 ~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-g~----~~i~V~NRt~~ra~~ 165 (283)
T COG0169 98 DGKLRGYNTDGIGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-GA----KRITVVNRTRERAEE 165 (283)
T ss_pred CCEEEEEcCCHHHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 687777676555544455543211122346899999999999999999998 72 589999999876553
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.33 Score=50.69 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..||+|+|+|..|+.++..|++. |. .+++++|++.
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~-Gv----g~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAA-GV----GTLGIVDHDV 169 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 36899999999999999999998 83 4799999874
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.046 Score=57.12 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|.+|.++|..|++. | ++|++++++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g-----~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-G-----YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 5899999999999999999998 7 8999999875
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.23 Score=49.34 Aligned_cols=149 Identities=19% Similarity=0.195 Sum_probs=86.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
++|||+|.|+ |.||..+...+.+. . +.+ +-.++|.+.... -+..+ .+-+.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~-~----~~~L~aa~~~~~~~~~----------g~d~g-----------e~~g~-- 52 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEA-P----DLELVAAFDRPGSLSL----------GSDAG-----------ELAGL-- 52 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcC-C----CceEEEEEecCCcccc----------ccchh-----------hhccc--
Confidence 3689999999 99999999999876 2 133 334555542110 00000 01111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+ .-.+.+++|+..+..++|++|=.+-+..+.+.++....+ +..+|.-|.|
T Consensus 53 --~----------------------~~gv~v~~~~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~------~~~lVIGTTG 102 (266)
T COG0289 53 --G----------------------LLGVPVTDDLLLVKADADVLIDFTTPEATLENLEFALEH------GKPLVIGTTG 102 (266)
T ss_pred --c----------------------ccCceeecchhhcccCCCEEEECCCchhhHHHHHHHHHc------CCCeEEECCC
Confidence 0 013456677777788999999888777776666655432 2345566779
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEe
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
++.+. . +.+++..- .+.++..|||+--+.-- ...+++..+.|. ++.+.+
T Consensus 103 f~~e~-----~----~~l~~~a~----~v~vv~a~NfSiGvnll----------~~l~~~aak~l~--~~DiEI 151 (266)
T COG0289 103 FTEEQ-----L----EKLREAAE----KVPVVIAPNFSLGVNLL----------FKLAEQAAKVLD--DYDIEI 151 (266)
T ss_pred CCHHH-----H----HHHHHHHh----hCCEEEeccchHHHHHH----------HHHHHHHHHhcC--CCCEEe
Confidence 98762 1 33443321 13467788887532210 234567777776 555543
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.33 Score=48.86 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=47.7
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+|.++-.|-.-.-=+.-|+... .....+++.|+|+|..|.+++..|++. |. .++++++|+.++++.
T Consensus 100 ~~g~l~G~NTD~~Gf~~~L~~~~--~~~~~k~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~ka~~ 166 (283)
T PRK14027 100 ATGHTTGHNTDVSGFGRGMEEGL--PNAKLDSVVQVGAGGVGNAVAYALVTH-GV----QKLQVADLDTSRAQA 166 (283)
T ss_pred CCCcEEEEcCCHHHHHHHHHhcC--cCcCCCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEcCCHHHHHH
Confidence 47777777765555444454311 122346899999999999999999987 62 589999999875543
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.67 Score=45.33 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|+|+|.+|+.++..|++. |. .+++++|.+.
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~-GV----g~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARS-GV----GKLTLIDFDV 45 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCE
Confidence 5899999999999999999999 83 5899998875
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.35 Score=47.39 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=29.6
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||.|+|+|+.|+.++..|+.. |. .+++++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~-Gv----g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-GF----GQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 689999999999999999998 83 5799999875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.059 Score=50.82 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=33.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|||+|||| |..|+.|+.-..+. | |+|+-+.|++.++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-G-----HeVTAivRn~~K~~ 38 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-G-----HEVTAIVRNASKLA 38 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-C-----CeeEEEEeChHhcc
Confidence 79999997 99999999999988 7 99999999987543
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.14 Score=53.86 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||.|||+|..|+.+|..|+.. |. .+++++|.+.
T Consensus 43 ~~VlviG~GGlGs~va~~La~~-Gv----g~i~lvD~D~ 76 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAA-GV----GTLGIVEFDV 76 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCE
Confidence 6899999999999999999998 83 5799998875
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.064 Score=55.99 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|+|+|||+|.+|.+.|..|++. | ++|.+++++.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~-g-----~~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQA-G-----HEVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEeCCC
Confidence 6899999999999999999998 7 8999999975
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.17 Score=52.26 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=39.5
Q ss_pred hHHHhHHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 25 LEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
+-+-++.-+.+++. .-..++|.|+|| |.||+.++..|+.+.| ..++++++|+++.+
T Consensus 138 l~~~V~la~~~lg~-~l~~k~VLVtGAtG~IGs~lar~L~~~~g----v~~lilv~R~~~rl 194 (340)
T PRK14982 138 ICRQVEQNAPRLGI-DLSKATVAVVGATGDIGSAVCRWLDAKTG----VAELLLVARQQERL 194 (340)
T ss_pred HHHHHHHhHHHhcc-CcCCCEEEEEccChHHHHHHHHHHHhhCC----CCEEEEEcCCHHHH
Confidence 34445555666663 234478999999 8999999999975413 15799999986543
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.45 Score=48.04 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.||.|+|+|.+|+.+|..|+.. |. ..++++|.+.-
T Consensus 20 s~VLIvG~gGLG~EiaKnLala-GV----g~itI~D~d~v 54 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILA-GV----KSVTLHDTKPC 54 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHc-CC----CeEEEEcCCcc
Confidence 5899999999999999999999 83 58999998753
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.17 Score=56.22 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=34.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.++|.|+|.|.+|..++..|.+. | +++++++.|+++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~ 438 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-K-----MRITVLERDISAVNL 438 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence 46899999999999999999988 6 899999999987664
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.32 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.5
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
.+||+|+|+|.+|..++..|.++
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHh
Confidence 47999999999999999998754
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.12 Score=52.31 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=31.0
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||.|.|+ |.+|+.++..|.++ | ++|+..+|+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~-g-----~~V~~l~R~~~ 35 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE-G-----YQVRCLVRNLR 35 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEEcChH
Confidence 69999996 99999999999988 7 89999999864
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.25 Score=50.47 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.9
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
...++|++|+|+|...-.++.+++.. . +..||.++.-+
T Consensus 47 ~~~~~DvvFlalp~~~s~~~~~~~~~---~---g~~VIDlSadf 84 (313)
T PRK11863 47 LLNAADVAILCLPDDAAREAVALIDN---P---ATRVIDASTAH 84 (313)
T ss_pred hhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECChhh
Confidence 34678999999999987777777643 2 56788777443
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.19 Score=50.64 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=28.0
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
-++|+|||.|. +|..+|..|... | ..|+++.++
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~-g-----atVtv~~s~ 191 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQK-N-----ASVTILHSR 191 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 37999999988 999999999987 6 788877653
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.086 Score=54.17 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=31.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|+|||+|.-|.++|..|+++ | ++|+++.+++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ-G-----HEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 6899999999999999999998 8 89999998874
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.22 Score=42.86 Aligned_cols=47 Identities=26% Similarity=0.363 Sum_probs=32.9
Q ss_pred EecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 150 VVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 150 ~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++++++.+. +.|+||-|+++....+.+.++ ++. +..||++.||...
T Consensus 47 ~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~---L~~---G~~VVt~nk~ala 95 (117)
T PF03447_consen 47 FTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA---LER---GKHVVTANKGALA 95 (117)
T ss_dssp EESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH---HHT---TCEEEES-HHHHH
T ss_pred ccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH---HHC---CCeEEEECHHHhh
Confidence 5678888777 899999999988777665554 444 5679999998544
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.28 Score=46.94 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=29.3
Q ss_pred EEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 46 IVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 46 IaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|+|+ |..|..++..|.+. + ++|++..|+..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~-~-----~~V~~l~R~~~ 33 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA-G-----FSVRALVRDPS 33 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-T-----GCEEEEESSSH
T ss_pred CEEECCccHHHHHHHHHHHhC-C-----CCcEEEEeccc
Confidence 789997 99999999999987 6 89999999973
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.34 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.3
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
++||+|+|+|.+|..++..|.++
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~ 25 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEEN 25 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHh
Confidence 47999999999999999888654
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.12 Score=53.63 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+++|+|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA-G-----WDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 457999999999999999999998 7 89999998764
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.37 Score=49.67 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=27.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|+||+|+|+ |.-|.-|...|+.+ - ..++.+++.++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H-p----~ve~~~~ss~~ 37 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH-P----DVELILISSRE 37 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC-C----CeEEEEeechh
Confidence 4689999997 99999999999977 2 24666665544
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.43 Score=40.41 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...+|.|||+|.+|..=+..|.+. | .+|++++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~-g-----A~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA-G-----AKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC-T-----BEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEECCch
Confidence 446899999999999999999888 7 8999999874
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.62 Score=48.23 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=27.3
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++||+|+| +|.+|..+...|.+. . ..++..+.+++
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p----~~el~~~~~s~ 38 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-P----WFEVTALAASE 38 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-C----CceEEEEEcCh
Confidence 47999998 799999999999866 3 14777765554
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.22 Score=56.44 Aligned_cols=52 Identities=27% Similarity=0.263 Sum_probs=39.5
Q ss_pred HHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|.+.=+.++|..++. ..||+|+|+| +|+..|..|+.. |.+ .+++|+|.+.
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~Lara-Gvv---G~l~lvD~D~ 141 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAE-GLC---GELRLADFDT 141 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHc-cCC---CeEEEEcCCE
Confidence 46777666666655444 3689999999 999999999998 721 3788998875
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.52 Score=48.17 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=31.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
||.|+|+|++|+.++..|+.. |. .+++++|.+.-...
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-Gv----g~ItIvD~D~Ve~s 37 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-GF----GEIHIIDLDTIDLS 37 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-cC----CeEEEEcCCCcchh
Confidence 689999999999999999998 83 58999998754333
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.13 Score=52.86 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=32.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++++|+|||+|.-|.++|..|++. | ++|+++.++++
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g-----~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-G-----IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 457899999999999999999998 7 89999998764
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.13 Score=53.30 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+++|+|||+|..|.++|..|++. | ++|+++.+++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g-----~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-G-----IKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEeeCcc
Confidence 47999999999999999999998 7 89999999864
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.12 Score=53.62 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=32.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|++|+|+|+|.-|.++|..|++. | ++|+++.+.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRH-G-----YSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEcCCCC
Confidence 57899999999999999999998 7 89999998765
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.15 Score=51.08 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=29.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.+|+|||+|--|.++|..|+++ | ++|+++.+++..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-G-----IDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-T-----CEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-c-----cccccchhcccc
Confidence 4799999999999999999999 8 899999998653
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.36 Score=53.92 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=35.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
..+|.|+|.|.+|..++..|.++ | .++++++.|+++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g-----~~vvvID~d~~~v~~ 438 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-G-----VKMTVLDHDPDHIET 438 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-C-----CCEEEEECCHHHHHH
Confidence 46899999999999999999988 6 899999999987765
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.88 Score=47.22 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=28.6
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+.+.|++|+|+|+..-.++...+.. . +..||.++.-+
T Consensus 65 ~~~~~Divf~a~~~~~s~~~~~~~~~---~---G~~VID~Ss~f 102 (347)
T PRK06728 65 SFEGVDIAFFSAGGEVSRQFVNQAVS---S---GAIVIDNTSEY 102 (347)
T ss_pred HhcCCCEEEECCChHHHHHHHHHHHH---C---CCEEEECchhh
Confidence 35789999999999987777776543 2 57788877554
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.76 Score=47.63 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=29.1
Q ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 156 eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+++.++|+||+|+|+....++..++.. . +..||.++.-+
T Consensus 65 ~~~~~~D~vf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~f 103 (344)
T PLN02383 65 DSFDGVDIALFSAGGSISKKFGPIAVD---K---GAVVVDNSSAF 103 (344)
T ss_pred HHHcCCCEEEECCCcHHHHHHHHHHHh---C---CCEEEECCchh
Confidence 446889999999999988877776543 2 56788877544
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.34 Score=49.08 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.7
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||.|||+|..|+.++..|+.. |. .+++++|.+.-
T Consensus 1 kVlVVGaGGlG~eilknLal~-Gv----g~I~IvD~D~V 34 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-GF----RNIHVIDMDTI 34 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCCEe
Confidence 689999999999999999998 83 57899988753
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.16 Score=52.78 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+.+|+|||+|..|.++|..|++. | ++|.++++.+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~-G-----~~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA-G-----LSVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEeCCC
Confidence 446899999999999999999998 7 8999999875
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.16 Score=52.77 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|+|||+|..|.++|..|++. | ++|+++.+.++
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY-G-----HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC-C-----CceEEEeCCCC
Confidence 5899999999999999999998 8 89999998764
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.86 Score=47.00 Aligned_cols=37 Identities=32% Similarity=0.336 Sum_probs=26.5
Q ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 156 eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
+...++|+||+|+|+....++.+.+.. . +..+|.++.
T Consensus 69 ~~~~~~DvVf~a~p~~~s~~~~~~~~~---~---G~~VIDlsg 105 (341)
T TIGR00978 69 VASKDVDIVFSALPSEVAEEVEPKLAE---A---GKPVFSNAS 105 (341)
T ss_pred HHhccCCEEEEeCCHHHHHHHHHHHHH---C---CCEEEECCh
Confidence 346789999999999988877765543 2 455666653
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.46 Score=38.72 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=29.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
..++++|+|+|.+|..++..+.+. + ..+|.+|+|
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~-~----~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADE-G----GKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-C----CCEEEEEcC
Confidence 347899999999999999999987 4 268999988
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.9 Score=46.94 Aligned_cols=97 Identities=13% Similarity=0.067 Sum_probs=59.3
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+.+||+|||| |..|..+...|++. . + |..++..+..+.. +.+ +..+.+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~-~-h-P~~~l~~laS~~s-aG~-----------------------~~~~~~---- 51 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAER-Q-F-PVGELYALASEES-AGE-----------------------TLRFGG---- 51 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcC-C-C-CceEEEEEEccCc-CCc-----------------------eEEECC----
Confidence 4589999998 99999999999984 1 1 1146666644321 110 000111
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~e-al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
..+.+. ++++ ...++|++|+|+|+..-.++.+++.. . +..||.++.-
T Consensus 52 -------------------------~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~~---~---g~~VIDlS~~ 99 (336)
T PRK08040 52 -------------------------KSVTVQ-DAAEFDWSQAQLAFFVAGREASAAYAEEATN---A---GCLVIDSSGL 99 (336)
T ss_pred -------------------------cceEEE-eCchhhccCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECChH
Confidence 012332 2222 23689999999999877777776643 2 5678887754
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
+-
T Consensus 100 fR 101 (336)
T PRK08040 100 FA 101 (336)
T ss_pred hc
Confidence 43
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.42 Score=48.24 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.3
Q ss_pred CceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEE
Q 012349 43 PLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIW 78 (465)
Q Consensus 43 ~mkIaIIGaGam-GsalA~~La~~~G~~~~~~~V~l~ 78 (465)
-++|+|||.|.. |..+|..|.+. | ..|+++
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~-~-----atVt~~ 188 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQA-G-----ATVTIC 188 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC-C-----CEEEEe
Confidence 368999999888 99999999877 5 678775
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.65 Score=47.90 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=31.1
Q ss_pred EEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 149 ~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.+.+|.++.+. +.|+|++|+|+....++...... . +.. |.+-|-+..
T Consensus 51 ~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~---a---Gkh-Vl~EKPla~ 99 (344)
T PRK10206 51 HFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRALE---A---GKN-VLVEKPFTP 99 (344)
T ss_pred cccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHH---c---CCc-EEEecCCcC
Confidence 34577888775 57999999999877766655443 2 223 345776654
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.22 Score=49.79 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.|+|||+|-.|.++|..|++. | ++|++++++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G-----~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-G-----HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-T-----SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeec
Confidence 489999999999999999998 8 899999998
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.19 Score=52.77 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|+|||+|--|.++|..|++. | ++|+++.+.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR-G-----IEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEcCCc
Confidence 6899999999999999999998 7 89999999764
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.7 Score=44.06 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=35.2
Q ss_pred EEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 149 KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 149 ~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
.+..+.+++-+. .|+.+++||...+.+++++.... . -..++.++.|+..+
T Consensus 52 ~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~~~-g----vk~avI~s~Gf~~~ 103 (291)
T PRK05678 52 PVFNTVAEAVEATGANASVIYVPPPFAADAILEAIDA-G----IDLIVCITEGIPVL 103 (291)
T ss_pred eccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHHHC-C----CCEEEEECCCCCHH
Confidence 344556565444 79999999999999999987652 1 13456678888643
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.19 Score=51.99 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|+|||+|..|.++|..|++. | .+|+++++++.
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~-G-----~~v~liE~~~~ 41 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARA-G-----ASVALVAPEPP 41 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcC-C-----CeEEEEeCCCC
Confidence 5799999999999999999998 7 89999998753
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.3 Score=42.46 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=30.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.++|.|||+|.+|..-+..|.+. | .+|++++.+.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~-g-----a~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA-G-----AQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CEEEEEcCCC
Confidence 36899999999999999999998 7 8999998764
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.65 Score=47.98 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=28.2
Q ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 156 eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+.+.++|++|+|+|+....++.+.+.. . +..||.++.-
T Consensus 57 ~~~~~~D~v~~a~g~~~s~~~a~~~~~---~---G~~VID~ss~ 94 (339)
T TIGR01296 57 ESFEGIDIALFSAGGSVSKEFAPKAAK---C---GAIVIDNTSA 94 (339)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHH---C---CCEEEECCHH
Confidence 346889999999999988888776543 3 4567776643
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.22 Score=51.88 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=31.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
....|+|||+|..|.++|..|++. | ++|+++++++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~-G-----~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARA-G-----VDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 446899999999999999999998 7 89999998753
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.2 Score=46.28 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=28.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~ 86 (465)
.+.||+|||+ .||...+..+.+. .. +.+ |-++++++++++
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~-~~---~~eLvaV~d~~~erA~ 42 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAA-PE---RFELAGILAQGSERSR 42 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhC-CC---CcEEEEEEcCCHHHHH
Confidence 3579999999 6899888888764 20 133 557888876544
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.73 Score=51.99 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=39.7
Q ss_pred hHHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-++|.+.=.++++..++. ..||+|+|+|.+|+.++..|+.. |. .+++++|.+.
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~-GV----G~l~LvD~D~ 77 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRT-GI----GRFHIADFDQ 77 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHh-CC----CeEEEEcCCE
Confidence 345666555565543333 36899999999999999999999 84 5788998875
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.27 Score=50.53 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++++|+|||+|-.|.+.|..|++. | .+|+++++++
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-G-----~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-G-----ADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-C-----CEEEEEecCc
Confidence 457899999999999999999999 8 7999998765
|
|
| >PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.61 Score=43.06 Aligned_cols=96 Identities=24% Similarity=0.338 Sum_probs=48.9
Q ss_pred HHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhh
Q 012349 30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIR 109 (465)
Q Consensus 30 ~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~ 109 (465)
++++.++........+|++.|||+=|.++...+.-. . ..-..++|.++.+
T Consensus 55 ~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~-~----~~I~~vvD~np~K------------------------- 104 (160)
T PF08484_consen 55 AELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLD-N----DLIDYVVDDNPLK------------------------- 104 (160)
T ss_dssp HHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT---T----TTS--EEES-GGG-------------------------
T ss_pred HHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCC-c----ceeEEEEeCChhh-------------------------
Confidence 344444433333447899999999999998887543 1 1234577777632
Q ss_pred cccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCcchHHHHHHHHHHhhhc
Q 012349 110 RCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKE 186 (465)
Q Consensus 110 n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIlaVps~~l~~vl~~l~~~l~~ 186 (465)
..+|+|+. .+ +|.. +++.. ...|+||+ .+..+..++.+++..+...
T Consensus 105 ~G~~~PGt-------~i--------------------pI~~---p~~l~~~~pd~viv-law~y~~EI~~~~~~~~~~ 151 (160)
T PF08484_consen 105 QGKYLPGT-------HI--------------------PIVS---PEELKERKPDYVIV-LAWNYKDEIIEKLREYLER 151 (160)
T ss_dssp TTEE-TTT-----------------------------EEEE---GGG--SS--SEEEE-S-GGGHHHHHHHTHHHHHT
T ss_pred cCcccCCC-------CC--------------------eECC---HHHHhhCCCCEEEE-cChhhHHHHHHHHHHHHhc
Confidence 12466653 11 1222 22222 34688777 6788999999999988765
|
; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.26 Score=51.43 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++|+|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-G-----LRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-C-----CEEEEEecCCc
Confidence 47899999999999999999998 8 89999998764
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.22 Score=51.91 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.+.|+|||+|..|.++|..|++. | ++|+|+.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G-----~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-G-----LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEccC
Confidence 46899999999999999999999 8 899999997
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.34 Score=37.97 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.6
Q ss_pred EECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 48 GVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 48 IIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||+|.-|.+.|..|++. | ++|+++.+++.
T Consensus 1 IiGaG~sGl~aA~~L~~~-g-----~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-G-----YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-T-----SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-C-----CcEEEEecCcc
Confidence 899999999999999998 7 89999998763
|
... |
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.71 Score=54.31 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=38.0
Q ss_pred HHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 27 ERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 27 ~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+|.+.-.+++|+..+. ..+|.|+|+|..|+-+|..|+.. |. ..++++|.+.-
T Consensus 5 ~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~la-GV----g~iti~D~d~v 59 (1008)
T TIGR01408 5 ALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLA-GV----KSVTLHDTEKC 59 (1008)
T ss_pred hhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHc-CC----CeEEEEeCCee
Confidence 3444444455543322 25899999999999999999999 84 58999998753
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.56 Score=47.31 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=28.5
Q ss_pred CCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
.-++|+|||+|. .|.+++..|.+. | ..|+++.|
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~-g-----atVtv~~~ 191 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNA-N-----ATVTICHS 191 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhC-C-----CEEEEEeC
Confidence 346899999998 999999999987 6 68888876
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.25 Score=51.74 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (465)
|||+|||+|--|.++|..|++. | + +|+++.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~-g-----~~~v~v~Er~~~ 35 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH-S-----HLNVQLFEAAPA 35 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-C-----CCCEEEEecCCc
Confidence 6899999999999999999988 6 5 8999999864
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.27 Score=50.39 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||+|.+|+++|..|++. | ++|++++++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~-g-----~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARR-G-----LRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccc
Confidence 3599999999999999999998 7 8999999875
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.94 E-value=1 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.2
Q ss_pred ceEEEECccHHHHHHHHHHHHh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~ 65 (465)
|||+|+|.|++|+.++..|.++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 5899999999999999999773
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.91 Score=46.34 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 156 eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
+.+.++|++|+|+|.....++.+.+.. . +..||.++.
T Consensus 45 ~~~~~~D~vFlalp~~~s~~~~~~~~~---~---g~~VIDlSa 81 (310)
T TIGR01851 45 KLLNAADVAILCLPDDAAREAVSLVDN---P---NTCIIDAST 81 (310)
T ss_pred HhhcCCCEEEECCCHHHHHHHHHHHHh---C---CCEEEECCh
Confidence 445789999999999987777776542 2 567877663
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.31 Score=50.87 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=31.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+.+|+|||+|..|.+.|..|++. | ++|+++.+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 36899999999999999999998 8 89999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.7 Score=54.32 Aligned_cols=57 Identities=23% Similarity=0.192 Sum_probs=43.4
Q ss_pred hHHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCC-CCeeEEEEecCc
Q 012349 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLR-DKVLIRIWRRPG 82 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~-~~~~V~l~~r~~ 82 (465)
..+|.|...+++|...+. ..||.|||+|+.|+-++..|+.. |.-. +...++++|.+.
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~-Gv~~~~~G~i~IvD~D~ 458 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALM-GVGTGKKGMITVTDPDL 458 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHh-CCCcCCCCeEEEECCCE
Confidence 468888888888765443 36899999999999999999998 7210 013788888775
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.64 Score=49.11 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++|.|||.|.+|.++|..|.+. | ++|+.+++++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~-G-----~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK-G-----VYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence 5899999999999999999988 7 78999998764
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.32 Score=49.96 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.|+|||+|.+|.+.|..|++. | .+|+++++..
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-g-----~~V~l~e~~~ 33 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-G-----KKTLLLEQFD 33 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence 589999999999999999998 7 7899998854
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.35 Score=51.50 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=31.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+++|+|||+|-.|+..|..|++. | .+|++++..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~-G-----l~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKR-G-----VPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEEccCc
Confidence 46899999999999999999998 8 89999986543
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.31 Score=50.46 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+.+|+|||+|..|.++|..|++. | ++|+++.+.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~-G-----~~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQK-G-----IKTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcC-C-----CeEEEecCCC
Confidence 35799999999999999999998 7 8999999763
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=90.33 E-value=1.7 Score=43.71 Aligned_cols=106 Identities=12% Similarity=0.169 Sum_probs=50.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+.||++||+|.+-.+.-...... |. +..|.-+|++++.++.. ++ .+++. .++
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~-~~---~~~v~~iD~d~~A~~~a--~~---lv~~~--------------~~L---- 172 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQH-GP---GARVHNIDIDPEANELA--RR---LVASD--------------LGL---- 172 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--H-TT-----EEEEEESSHHHHHHH--HH---HHH-----------------HH----
T ss_pred ccceEEEEcCCCcchHHHHHHHHh-CC---CCeEEEEeCCHHHHHHH--HH---HHhhc--------------ccc----
Confidence 457999999999988854444333 31 14688899998765531 11 12211 111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEE-ecCHH---HHhcCCCEEEEecCcc----hHHHHHHHHHHhhhccCCCCEE
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQ---EAVWDADIVINGLPST----ETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~dl~---eal~~aDiVIlaVps~----~l~~vl~~l~~~l~~~~~~~iv 193 (465)
.. .+.+ +.|.. ..+.++|+|++|--.. ...++++.|.+++++ ++.+
T Consensus 173 ~~-----------------------~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~---ga~l 226 (276)
T PF03059_consen 173 SK-----------------------RMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAP---GARL 226 (276)
T ss_dssp -S-----------------------SEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-T---TSEE
T ss_pred cC-----------------------CeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCC---CcEE
Confidence 00 1222 22221 2256789999998776 899999999999987 5644
Q ss_pred E-Eeeccc
Q 012349 194 I-SLAKGV 200 (465)
Q Consensus 194 I-s~~kGi 200 (465)
+ =-.+|+
T Consensus 227 ~~Rsa~Gl 234 (276)
T PF03059_consen 227 VVRSAHGL 234 (276)
T ss_dssp EEEE--GG
T ss_pred EEecchhh
Confidence 3 234454
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.37 Score=49.89 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=32.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+++|+|||+|.-|.+.|..|+++ | .+|+++.+.++
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-G-----HSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-C-----CcEEEEeCCCc
Confidence 346899999999999999999999 8 89999998875
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.86 Score=46.45 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=30.6
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
...+-||+|||.|-.|+--|....-- | .+|++.+++.+++
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~gl-g-----A~Vtild~n~~rl 204 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGL-G-----ADVTILDLNIDRL 204 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhcc-C-----CeeEEEecCHHHH
Confidence 33356999999999999977666533 4 7999999997543
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.6 Score=45.09 Aligned_cols=42 Identities=29% Similarity=0.268 Sum_probs=29.1
Q ss_pred CHHHHh--cCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 153 NLQEAV--WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 153 dl~eal--~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+.++.+ .++|+||-++.+....++..+. +.. +..||+..||.
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~---G~~VVtanK~~ 125 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKE---GKSVVTSNKPP 125 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHH---Hhh---CCcEEECCHHH
Confidence 455555 4789999999877665555544 344 46788899984
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.33 Score=50.20 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=31.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...+|+|||+|..|+++|..|++. | ++|+++++.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~-G-----~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH-G-----FSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 346899999999999999999998 7 8999999865
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.35 Score=50.48 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.||+|||+|.-|.++|..|++. | ++|+++.+.++
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G-----~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-G-----WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCc
Confidence 5899999999999999999998 7 89999998764
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.85 Score=53.07 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.||+|+|+|..|+.++..|+.. |. .+++|+|.+.-
T Consensus 333 srVlVvGlGGlGs~ia~~LAra-GV----G~I~L~D~D~V 367 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLART-GI----GNFNLADFDAY 367 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CC----CeEEEEcCCEe
Confidence 6899999999999999999999 84 57889888753
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=2 Score=45.42 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=28.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
+..|.|+|.|.+|..++..|.+. | .+|.+++.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~-g-----~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQR-G-----QAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHC-C-----CCEEEEECc
Confidence 34699999999999999999877 6 788888765
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.47 Score=53.01 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=38.5
Q ss_pred hhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.+..|.+.+..+.+........|+|||+|..|+++|..|++. | .+|.|+.++
T Consensus 52 ~~~~r~~~~~~~~~~~~~~~~DVvVIGGGi~Ga~~A~~lA~r-G-----l~V~LvE~~ 103 (627)
T PLN02464 52 SVPSRSAQESALIGATAAEPLDVLVVGGGATGAGVALDAATR-G-----LRVGLVERE 103 (627)
T ss_pred CCcChHHHHHHhhccccCCccCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEecc
Confidence 344555555554322223346899999999999999999999 8 789999886
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.52 Score=48.42 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=36.4
Q ss_pred HhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 32 ~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|.+-.++ ..++|+|||+|..|...|..|++. | ++|+++++.+.
T Consensus 8 ~~~~~~~~~-~~~~VvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~~ 52 (352)
T PRK12770 8 FMCKEKPPP-TGKKVAIIGAGPAGLAAAGYLACL-G-----YEVHVYDKLPE 52 (352)
T ss_pred hhcccCCCC-CCCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 556654433 357999999999999999999988 7 89999998754
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.45 Score=46.98 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=30.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCC----CC--CCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGY----LR--DKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~----~~--~~~~V~l~~r~~ 82 (465)
+..||.|||+|..|+.++..|++. |. +- .+.+++++|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-HHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-cccccccCCCCCCEEEEECCCE
Confidence 457999999999999999999986 41 00 012789998875
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.64 Score=46.45 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=36.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i 88 (465)
+++++.|-|| +.+|-.+|..||++ | ++|.|++|++++++++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~-g-----~~liLvaR~~~kL~~l 46 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR-G-----YNLILVARREDKLEAL 46 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCcHHHHHHH
Confidence 4568999997 89999999999999 8 9999999999877653
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=89.72 E-value=0.41 Score=50.25 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++|.|||+|.-|++.|..|++. | ++|.++++...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G-----~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-G-----IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 5899999999999999999998 8 89999998753
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=1.2 Score=44.94 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=26.2
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 43 ~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
-++|+|||-|. .|..+|..|.+. | ..|+++.+
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~-~-----atVtv~hs 191 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLA-G-----CTVTVCHR 191 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC-C-----CeEEEEEC
Confidence 36899999988 999999999877 5 67887743
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.2 Score=48.72 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=45.8
Q ss_pred CCeeEeecchhHHHhHHHhhhhcC--------CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 15 NGLIHHTNGSLEERLDELRRLMGK--------AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+|-++-.|-.-.--+.-|++.+.. .....+++.|+|+|.+|.+++..|++. | .+|++++|+.+.++
T Consensus 343 ~g~l~G~NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~-G-----~~V~i~nR~~e~a~ 416 (529)
T PLN02520 343 DGKLVGYNTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEK-G-----ARVVIANRTYERAK 416 (529)
T ss_pred CCEEEEEcccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 676776776555544445432210 011236899999999999999999998 7 68999999876544
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.64 E-value=1.9 Score=45.13 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=28.0
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCC--CEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~--~ivIs~~kGi 200 (465)
.+.++|++|+|+|+...+++..++.. . + .+||.++.-+
T Consensus 62 ~~~~~Divf~a~~~~~s~~~~~~~~~---a---G~~~~VID~Ss~f 101 (369)
T PRK06598 62 ALKKLDIIITCQGGDYTNEVYPKLRA---A---GWQGYWIDAASTL 101 (369)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHh---C---CCCeEEEECChHH
Confidence 35789999999999988877777643 2 3 4577777544
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.42 Score=49.58 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|..|.++|..|++. | ++|+++++.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQ-G-----RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEcCCC
Confidence 4899999999999999999998 8 8999999764
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.5 Score=50.67 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++.|+|||+|.-|++.|..|++. | .+|.++.+...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~-G-----~~VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKG-G-----IETFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 447899999999999999999998 8 89999998753
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=89.60 E-value=0.4 Score=49.12 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=30.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.|+|||+|.-|+++|..|++. | ++|+++.+++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-G-----LKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-C-----CEEEEEeCCCc
Confidence 389999999999999999998 8 89999999864
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.46 Score=49.46 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+|.|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G-----~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-G-----IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-C-----CCEEEEEcCCc
Confidence 36899999999999999999998 8 89999999863
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.49 Score=50.89 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++|+|||||.-|.+.|..|.+. | ++|+++.++..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G-----~~v~vfE~~~~ 44 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-G-----HTVVVFEREKQ 44 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-C-----CeEEEEecCCC
Confidence 47899999999999999999998 7 89999988753
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.43 Score=49.87 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|+|||+|..|.++|..|++. | ++|.++++.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~-G-----~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGS-G-----LRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhC-C-----CEEEEEeCCCC
Confidence 4799999999999999999998 8 89999999764
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.4 Score=53.83 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|+|||+|.+|+++|..|++. | .+|++++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-G-----~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-G-----WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5899999999999999999999 8 8999999874
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.36 E-value=1.5 Score=44.01 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=45.5
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|-+|-.|-.-.-=+.-|+.. +.. . ..++.|+|+|..+.+++..|++. |. .+|++++|+.++.+
T Consensus 96 ~~g~l~G~NTD~~Gf~~~L~~~-~~~-~-~~~vlilGaGGaarAi~~aL~~~-g~----~~i~i~nR~~~~a~ 160 (272)
T PRK12550 96 TDGHLKAYNTDYIAIAKLLASY-QVP-P-DLVVALRGSGGMAKAVAAALRDA-GF----TDGTIVARNEKTGK 160 (272)
T ss_pred eCCEEEEEecCHHHHHHHHHhc-CCC-C-CCeEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHH
Confidence 4676666665554444455432 332 1 24899999999999999999987 62 47999999986544
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.3 Score=45.56 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=33.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
..|+|+|-|| |.+|+.+...|..+ | |.|.-..|+++.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r-G-----Y~V~gtVR~~~~ 42 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR-G-----YTVRGTVRDPED 42 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC-C-----CEEEEEEcCcch
Confidence 5689999997 99999999999999 8 899999999874
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.5 Score=48.73 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=31.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+|+|||+|.-|.++|..|++. | .+|+++.+++.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQS-G-----LRVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 35799999999999999999998 7 89999998865
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=89.17 E-value=2.8 Score=37.85 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=25.1
Q ss_pred CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEe
Q 012349 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~ 196 (465)
|++++++.||+|+.+|....+ ++ ..++++ +++++.+
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~---i~--~~~ikp---Ga~Vidv 99 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK---VP--TEWIKP---GATVINC 99 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc---cC--HHHcCC---CCEEEEc
Confidence 556778999999999987643 22 345666 6777743
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.61 Score=50.64 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=32.7
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHH--hcCCCCCCeeEEEEecCch
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQD--SYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~--~~G~~~~~~~V~l~~r~~~ 83 (465)
.....+||+|||+|.-|.+.|..|++ . | ++|++|.+.+.
T Consensus 22 ~~~~~~~VaIVGaGPAGl~AA~~L~~~~~-g-----~~Vtv~E~~p~ 62 (491)
T PLN02852 22 STSEPLHVCVVGSGPAGFYTADKLLKAHD-G-----ARVDIIERLPT 62 (491)
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHhhCC-C-----CeEEEEecCCC
Confidence 34446799999999999999999986 4 5 89999999763
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.49 Score=48.50 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.|+|||+|.+|.+.|..|++. | ++|++++++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-G-----~~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-G-----LSVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 589999999999999999998 7 8999999865
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=89.03 E-value=2.1 Score=42.21 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=30.6
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 45 kIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
+|.|+|+ |.+|+.++..|.+. | ++|++.+|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g-----~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-S-----VPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-C-----CcEEEEeCCCcc
Confidence 5889998 99999999999988 7 899999999753
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.87 Score=48.96 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+||+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G-----~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-G-----VQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 347899999999999999999988 7 8999998875
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.66 E-value=0.72 Score=50.04 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=33.3
Q ss_pred hhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 33 ~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|-+... ..++||+|||+|.-|.+.|..|+...| ++|++|.+.+
T Consensus 30 ~~~~~~~-~~~krVAIVGaGPAGlyaA~~Ll~~~g-----~~VtlfEk~p 73 (506)
T PTZ00188 30 KCFFTNE-AKPFKVGIIGAGPSALYCCKHLLKHER-----VKVDIFEKLP 73 (506)
T ss_pred cccCCCC-CCCCEEEEECCcHHHHHHHHHHHHhcC-----CeEEEEecCC
Confidence 3445443 345799999999999999997654325 8999999875
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.49 Score=49.33 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||+|..|.++|..|++. | ++|+++.+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGS-G-----LEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcC-C-----CEEEEEcCCC
Confidence 3699999999999999999998 7 8999999875
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.72 Score=44.77 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=31.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
+|+|.|+|+ |.+|..++..|.++ | ++|+...|+++.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~ 53 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK-G-----FAVKAGVRDVDK 53 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEecCHHH
Confidence 579999996 99999999999988 7 899999998753
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=88.54 E-value=0.64 Score=50.72 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+|.|||+|..|+++|..|++. | ++|.++.++..
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~-G-----~~V~vlEr~~~ 77 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKD-G-----RRVHVIERDLR 77 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEECcCC
Confidence 35899999999999999999998 7 89999999753
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.64 Score=48.38 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=29.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||+|.+|+++|..|++.. ++++|++++++.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~----~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY----PGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC----CCCeEEEEeCCC
Confidence 57999999999999999999862 127999999875
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.52 Score=49.21 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.+|+|||+|..|.++|..|++. | ++|+++++.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~-G-----~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKES-D-----LRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CEEEEEcCC
Confidence 4799999999999999999998 8 899999985
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=88.20 E-value=6.5 Score=39.07 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=48.8
Q ss_pred ecCHHHHhc--CCCEEEEec--CcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCc
Q 012349 151 VTNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIE 226 (465)
Q Consensus 151 t~dl~eal~--~aDiVIlaV--ps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~ 226 (465)
..++.++++ ++|++|=.. |--+.+++++.+..+.+ +++|..++|-.+.. ..++.+.. +... .
T Consensus 95 ~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~~a------E~tpe~a~-~~t~---G 160 (254)
T cd00762 95 SGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINE----RPVIFALSNPTSKA------ECTAEEAY-TATE---G 160 (254)
T ss_pred cCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCC----CCEEEECCCcCCcc------ccCHHHHH-hhcC---C
Confidence 368899999 888776533 45688999999987765 46788888765532 23454533 3331 1
Q ss_pred cEEEEeCCchhhhhhccC
Q 012349 227 NILYLGGPNIASEIYNKE 244 (465)
Q Consensus 227 ~i~vlsGP~~a~ev~~g~ 244 (465)
+..+-+|-.|..-...|+
T Consensus 161 ~ai~AtGspf~pv~~~g~ 178 (254)
T cd00762 161 RAIFASGSPFHPVELNGG 178 (254)
T ss_pred CEEEEECCCCCCcccCCc
Confidence 234556655544323343
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.14 E-value=0.69 Score=50.28 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=30.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
...|.|||+|..|.++|..+++. | .+|.|+.++
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~r-G-----l~V~LvEk~ 38 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGR-G-----LSVLLCEQD 38 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEecC
Confidence 36799999999999999999999 8 789999986
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.68 Score=50.62 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
...+|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQ-G-----VPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence 345899999999999999999998 8 89999998864
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=88.01 E-value=2.6 Score=45.12 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCC-CCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLR-DKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~-~~~~V~l~~r~~ 82 (465)
||.|||+|+.|+-++..|+.. |.-. ++..++++|.+.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~ 38 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDN 38 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCC
Confidence 689999999999999999998 8311 113788998875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.99 E-value=2.3 Score=46.43 Aligned_cols=38 Identities=18% Similarity=0.377 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..|++|+|+|.+|...+..+..- | ..|+++++++++.+
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-G-----A~V~v~d~~~~rle 201 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKE 201 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 46999999999999988877766 6 67999999886544
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=0.62 Score=48.16 Aligned_cols=34 Identities=35% Similarity=0.432 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|.|||+|.-|.++|..|++. | ++|+++.+.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS-G-----LKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCc
Confidence 4799999999999999999998 8 89999998764
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=87.95 E-value=0.84 Score=46.75 Aligned_cols=44 Identities=23% Similarity=0.111 Sum_probs=36.7
Q ss_pred HHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 30 DELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 30 ~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|||..+.+ .+|||.|.|+ |-+|+.++..|.++ | ++|+.++|..
T Consensus 5 ~~~~~~~~~---~~~~vlVtGatGfiG~~lv~~L~~~-g-----~~V~~~d~~~ 49 (348)
T PRK15181 5 EELRTKLVL---APKRWLITGVAGFIGSGLLEELLFL-N-----QTVIGLDNFS 49 (348)
T ss_pred hhhhhcccc---cCCEEEEECCccHHHHHHHHHHHHC-C-----CEEEEEeCCC
Confidence 466766655 4589999996 99999999999998 7 8999999864
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.66 Score=52.19 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+.+|+|||+|--|.++|..|++. | ++|+++.|++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-G-----i~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-G-----FDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-C-----CeEEEEeccc
Confidence 347899999999999999999999 8 8999999975
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=87.78 E-value=0.83 Score=50.52 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+|.|||+|..|.++|..|++. | ++|.++.|+.
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~-G-----~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQ-G-----RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcccc
Confidence 46899999999999999999998 7 8999999975
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.76 E-value=0.71 Score=50.33 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+|+|||+|..|.++|..|++. | ++|+++.+.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~-G-----~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRR-G-----VDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 35899999999999999999999 8 89999998764
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.59 E-value=1.1 Score=43.13 Aligned_cols=45 Identities=16% Similarity=0.325 Sum_probs=35.8
Q ss_pred hhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 33 RRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 33 ~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
|.+++.. +.++|.|.|+ |.+|..++..|+++ | ++|.+.+|+++..
T Consensus 3 ~~~~~~~--~~~~vlItGa~g~iG~~~a~~L~~~-g-----~~V~~~~r~~~~~ 48 (264)
T PRK12829 3 IDLLKPL--DGLRVLVTGGASGIGRAIAEAFAEA-G-----ARVHVCDVSEAAL 48 (264)
T ss_pred hhHhhcc--CCCEEEEeCCCCcHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 3455443 3378999997 99999999999998 7 8999999987543
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=87.54 E-value=0.82 Score=49.13 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=31.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~-G-----~~V~vie~~~~ 177 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARA-G-----HKVTVFERADR 177 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEecCCC
Confidence 47999999999999999999998 7 89999998653
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=87.53 E-value=0.75 Score=50.44 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=27.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+||+|||||.-|.+.+..|.+. | .+|+++.++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-g-----~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-G-----LEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-T------EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHC-C-----CCCeEEecCCC
Confidence 6899999999999999999988 7 89999998765
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=0.77 Score=49.03 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..++|+|||+|..|.+.|..|++. | ++|+++++.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-g-----~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-G-----YDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEccCCC
Confidence 457999999999999999999998 7 89999998753
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=87.49 E-value=1.3 Score=45.83 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=43.2
Q ss_pred chhHHHhHHHhhhhcCC-------------------------CCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEE
Q 012349 23 GSLEERLDELRRLMGKA-------------------------EGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR 76 (465)
Q Consensus 23 ~~~~~~~~~~~~~~~~~-------------------------~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~ 76 (465)
-++|..++|||+...-. ....++|.|.|+ |.+|+.++..|+++ | ++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~VLVTGatGfIG~~lv~~L~~~-G-----~~V~ 81 (367)
T PLN02686 8 ESMEAEVEEFRAALLLSRGGDDDGWRGSRGGGKEANAGDAGADAEARLVCVTGGVSFLGLAIVDRLLRH-G-----YSVR 81 (367)
T ss_pred HhHHHHHHHHHHHHHhcccCCccccccccCccccccccccccCCCCCEEEEECCchHHHHHHHHHHHHC-C-----CEEE
Confidence 47788888998832111 233578999997 99999999999998 7 8999
Q ss_pred EEecCchh
Q 012349 77 IWRRPGRS 84 (465)
Q Consensus 77 l~~r~~~~ 84 (465)
++.|+.+.
T Consensus 82 ~~~r~~~~ 89 (367)
T PLN02686 82 IAVDTQED 89 (367)
T ss_pred EEeCCHHH
Confidence 88887643
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.41 E-value=2.5 Score=42.59 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=33.7
Q ss_pred hhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 33 RRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 33 ~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
++-+.....+..||+|+|| |.+|..++..|..+ -.+ .+..|||..
T Consensus 18 ~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~n-p~V---s~LaLYDi~ 63 (345)
T KOG1494|consen 18 KRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLN-PLV---SELALYDIA 63 (345)
T ss_pred cccccccccCcceEEEEecCCccCccHHHHHhcC-ccc---ceeeeeecc
Confidence 4456666777789999997 88999999988766 211 357788765
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.31 E-value=0.86 Score=51.19 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+||+|||+|..|.+.|..|++. | ++|+++++++.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G-----~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-G-----HDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 347999999999999999999998 7 89999998753
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=87.30 E-value=5.8 Score=40.09 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=34.3
Q ss_pred EEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 149 KVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 149 ~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.+..+.+++-+. .|+.+++||...+.+++++.... . -..+|.++.|+..
T Consensus 50 ~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~~~-G----vk~avIis~Gf~e 100 (286)
T TIGR01019 50 PVFDSVKEAVEETGANASVIFVPAPFAADAIFEAIDA-G----IELIVCITEGIPV 100 (286)
T ss_pred eccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEECCCCCH
Confidence 344555554443 69999999999999999987652 1 1345668888854
|
ATP citrate lyases appear to form an outgroup. |
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.30 E-value=0.81 Score=49.61 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...|+|||+|..|.++|..|++. | .+|.|+.+..
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~r-G-----~~V~LlEk~d 39 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGR-G-----LKVLLCEKDD 39 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 35799999999999999999999 8 7899999873
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.25 E-value=1.4 Score=49.43 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+||+|||+|..|.+.|..|++. | ++|+++++.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G-----~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-G-----VAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 347999999999999999999998 7 8999999865
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.18 E-value=1.4 Score=49.37 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+||+|||+|..|.+.|..|++. | ++|++|.+.+.
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G-----~~Vtv~e~~~~ 344 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-G-----VQVDVFDRHPE 344 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-C-----CcEEEEeCCCC
Confidence 57999999999999999999988 7 89999998763
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.13 E-value=4.2 Score=40.61 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=58.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+++||.|||+|--|+ +.-+.+. . .+|++++.+++.++..+ +|+|.+.+-+
T Consensus 72 ~pk~VLIiGGGDGg~--~REvLkh-~-----~~v~mVeID~~Vv~~~k----------------------~~lP~~~~~~ 121 (262)
T PRK00536 72 ELKEVLIVDGFDLEL--AHQLFKY-D-----THVDFVQADEKILDSFI----------------------SFFPHFHEVK 121 (262)
T ss_pred CCCeEEEEcCCchHH--HHHHHCc-C-----CeeEEEECCHHHHHHHH----------------------HHCHHHHHhh
Confidence 468999999998554 3444444 2 48999999998765311 2455432111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEe-cCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVING-LPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIla-Vps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+ +++++.....+.- +..|+||+= +++ ++..+.+++.|++ +- +++++.|
T Consensus 122 ~D----------------------pRv~l~~~~~~~~~~~fDVIIvDs~~~---~~fy~~~~~~L~~---~G-i~v~Qs~ 172 (262)
T PRK00536 122 NN----------------------KNFTHAKQLLDLDIKKYDLIICLQEPD---IHKIDGLKRMLKE---DG-VFISVAK 172 (262)
T ss_pred cC----------------------CCEEEeehhhhccCCcCCEEEEcCCCC---hHHHHHHHHhcCC---Cc-EEEECCC
Confidence 11 1344433333322 568999986 444 4555667777776 44 4567766
Q ss_pred c
Q 012349 200 V 200 (465)
Q Consensus 200 i 200 (465)
-
T Consensus 173 s 173 (262)
T PRK00536 173 H 173 (262)
T ss_pred C
Confidence 3
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.97 Score=43.14 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=31.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
||+.|.|+ |.+|.+++..|++. | ++|.+.+|+++.++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~-g-----~~v~~~~r~~~~~~ 38 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND-G-----HKVTLVGARRDDLE 38 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 58999987 89999999999998 7 89999999876443
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=87.03 E-value=3.9 Score=39.42 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=30.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..++|+|||+|..|..=+..|.+. | .+|++|+...
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~-g-----a~v~Vvs~~~ 45 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKA-G-----ADVTVVSPEF 45 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-C-----CEEEEEcCCc
Confidence 447999999999999999999988 7 7899998765
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=0.88 Score=49.97 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||+|..|+++|..|++. | .+|.|+.++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-G-----~~V~LlEk~d 39 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-G-----LRCILVERHD 39 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-C-----CeEEEEECCC
Confidence 5799999999999999999998 8 8999999854
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=87.01 E-value=0.88 Score=53.29 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=32.9
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
....+||+|||+|.-|.+.|..|++. | |+|+++++..
T Consensus 303 ~~~gkkVaVIGsGPAGLsaA~~Lar~-G-----~~VtVfE~~~ 339 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLINAYLLAVE-G-----FPVTVFEAFH 339 (944)
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeeCC
Confidence 34568999999999999999999998 8 9999998864
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=86.96 E-value=2.7 Score=44.90 Aligned_cols=50 Identities=20% Similarity=0.138 Sum_probs=36.4
Q ss_pred HhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 28 RLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 28 ~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|.|.--|+.|...+. ..+|+|||+|+.|+-++..|+.. |. ..++++|.+.
T Consensus 2 rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~-GI----g~~tIvD~~~ 54 (425)
T cd01493 2 KYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLP-GI----GSFTIVDGSK 54 (425)
T ss_pred cchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHc-CC----CeEEEECCCc
Confidence 344444455433222 36899999999999999999998 83 5799998764
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.93 E-value=6.9 Score=39.79 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=29.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+.+|+-||+|..|..-...++.. . ++..++-++.+++..+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~-~---p~~~~~giD~d~~ai~~ 164 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH-L---PTTSFHNFDIDPSANDV 164 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc-C---CCCEEEEEeCCHHHHHH
Confidence 668999999999877654444433 1 11468899999876553
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.91 E-value=1 Score=43.26 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=31.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|.|+ |.+|.+++..|++. | ++|.+++|+.+..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~-g-----~~v~~~~r~~~~~ 39 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR-G-----YRVLAACRKPDDV 39 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHh
Confidence 47999998 99999999999988 7 8899999987543
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.91 E-value=0.8 Score=49.30 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~-G-----~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA-G-----VKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 4799999999999999999998 8 89999998764
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=86.91 E-value=0.97 Score=47.15 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=28.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.|+|||+|.+|+++|..|++..|. .+|.+++++.
T Consensus 32 dvvIIGgGi~G~s~A~~L~~~~g~----~~V~vle~~~ 65 (407)
T TIGR01373 32 DVIIVGGGGHGLATAYYLAKEHGI----TNVAVLEKGW 65 (407)
T ss_pred CEEEECCcHHHHHHHHHHHHhcCC----CeEEEEEccc
Confidence 699999999999999999984151 3799999863
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=86.83 E-value=0.86 Score=44.49 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=29.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.|+|||+|..|.++|..|++. | .+|.++.++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~-g-----~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADK-G-----LRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 589999999999999999988 7 89999998864
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=86.76 E-value=0.75 Score=49.13 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=30.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+|+|||+|-.|+..|..|++. | .+|+++.+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G-----~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-G-----VPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-C-----CcEEEEecccc
Confidence 699999999999999999999 8 89999987654
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=86.73 E-value=2.6 Score=42.48 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=35.6
Q ss_pred cCHHHHhc--CCCEEEEec--CcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 152 TNLQEAVW--DADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 152 ~dl~eal~--~aDiVIlaV--ps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.++.++++ ++|++|=+. |--+.+++++.+..+.+ +.+|..++|-..
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~----~PIIFaLSNPt~ 144 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNE----RPIIFALSNPTS 144 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCC----CCEEEECCCcCC
Confidence 57889998 889877655 45688999999987765 478888887654
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=86.47 E-value=0.97 Score=49.32 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=32.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
...+|+|||+|..|.++|..|++. | .+|.++.+.++
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~-G-----~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQY-G-----VRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 346899999999999999999998 7 89999999864
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.41 E-value=3.7 Score=42.49 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=29.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|+|+|+|..|.. |..+|++.| .+|+.++|++++.+
T Consensus 168 ~~V~I~G~GGlGh~-avQ~Aka~g-----a~Via~~~~~~K~e 204 (339)
T COG1064 168 KWVAVVGAGGLGHM-AVQYAKAMG-----AEVIAITRSEEKLE 204 (339)
T ss_pred CEEEEECCcHHHHH-HHHHHHHcC-----CeEEEEeCChHHHH
Confidence 68999999988876 555555436 79999999987654
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.31 E-value=0.85 Score=46.87 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=29.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+.|+|||+|.-|+++|..|++. ++|.++++.++
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-------~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-------MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-------CCEEEEECCCc
Confidence 36899999999999999999876 68999998764
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.26 E-value=1 Score=43.18 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=31.1
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||+|.|.|+ |.+|.+++..|++. | ++|.+.+|+.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~-G-----~~v~~~~r~~~ 36 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP-G-----IAVLGVARSRH 36 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC-C-----CEEEEEecCcc
Confidence 478999997 99999999999998 7 88999998764
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.25 E-value=0.94 Score=47.41 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=31.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++.|+|||||.-|++.|..|+++ | .+|.++.+.++
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-G-----~~VlvlEk~~~ 37 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-G-----LDVLVLEKGSE 37 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-C-----CeEEEEecCCC
Confidence 46799999999999999999999 8 79999999764
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=1 Score=47.78 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=0.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||||+|||+|.-|...|..|.+. + ++++|+++++++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~-~---~~~~I~li~~~~ 36 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRL-D---KESDIIIFEKDR 36 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhh-C---CCCCEEEEECCC
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=86.16 E-value=12 Score=34.26 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.6
Q ss_pred ceEEEEC-c-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVG-A-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIG-a-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||++|| . +++..+++..+++- | .+|++.+...
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~-g-----~~~~~~~P~~ 37 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKF-G-----MEVVLIAPEG 37 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHT-T-----SEEEEESSGG
T ss_pred CEEEEECCCCChHHHHHHHHHHHc-C-----CEEEEECCCc
Confidence 6899999 4 79999999999887 7 6788887655
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=86.04 E-value=0.82 Score=49.06 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++|+|||||+-|.+-|..|.+. | ++|+++.|...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g-----~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-G-----HEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-C-----CCceEEEecCC
Confidence 47899999999999999999998 7 88988888764
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=1.2 Score=42.99 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=31.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
|+|.|+|+ |..|.+++..|++. | ++|.+.+|+++.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~ 37 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ-G-----HKVIATGRRQERL 37 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECCHHHH
Confidence 68999996 99999999999988 7 8999999987543
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=85.80 E-value=1 Score=47.19 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=29.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|+|||+|..|.++|..|++. | .+|.++.++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G-----~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-N-----KRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 5799999999999999999987 7 7899998754
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=85.78 E-value=1.3 Score=45.39 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=34.6
Q ss_pred cCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 37 GKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 37 ~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+...++|+|.|.|+ |.+|+.++..|.++ | ++|+..+|+.+
T Consensus 4 ~~~~~~~~~vlVTGatGfIG~~l~~~L~~~-G-----~~V~~~~r~~~ 45 (342)
T PLN02214 4 DVASPAGKTVCVTGAGGYIASWIVKILLER-G-----YTVKGTVRNPD 45 (342)
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEeCCch
Confidence 344455678999998 99999999999998 7 89999998764
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=85.78 E-value=1.2 Score=47.76 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..++|+|||+|.-|.+.|..|++. | ++|+++++.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G-----~~V~v~e~~~ 173 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-G-----YDVTIFEALH 173 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEecCC
Confidence 458999999999999999999998 7 8999998754
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.77 E-value=1.5 Score=42.29 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=32.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~-G-----~~V~~~~r~~~~~ 47 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQA-G-----AEVILNGRDPAKL 47 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHc-C-----CEEEEEeCCHHHH
Confidence 368999996 99999999999998 7 8999999987543
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=85.76 E-value=1 Score=44.24 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=29.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|+|||+|.-|.+.|..|++. | ++|++++++.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARA-N-----LKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence 699999999999999999988 7 8999999754
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.72 E-value=0.93 Score=48.91 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||+|+|+|--|.+-|..|+++ | ++|++|.++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-g-----~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-G-----YDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-C-----CceEEEeccC
Confidence 7999999999999999999999 8 9999998765
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.71 E-value=3.6 Score=40.07 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=28.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.++|.|||+|.+|..=+..|.+. | .+|++++..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~-g-----A~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKK-G-----CYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCC
Confidence 46899999999999988888887 7 789999865
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=85.63 E-value=1.1 Score=48.62 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=29.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...|+|||+|.||+++|..|++. + ++.+|.++.+..
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~-~---~g~~V~VlEk~~ 40 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKEL-E---PEWSITMFERLD 40 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHh-C---CCCeEEEEEcCC
Confidence 35799999999999999999985 2 126899999875
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.63 E-value=1 Score=48.59 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|+|||+|..|.++|..|++. | ++|+++++.++
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~-G-----i~v~viE~~~~ 37 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARR-G-----VSFRLIEKAPE 37 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 5799999999999999999999 8 89999999764
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.59 E-value=1.8 Score=41.42 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=31.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~-g-----~~vi~~~r~~~~~ 43 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE-G-----ASVVVADINAEGA 43 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 68999998 99999999999998 7 8999999986543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=85.49 E-value=1.2 Score=45.40 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=30.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||||.|.|+ |.+|+.++..|.++.| ++|+.++|+.+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~-----~~V~~~~r~~~ 37 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTD-----WEVYGMDMQTD 37 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCC-----CeEEEEeCcHH
Confidence 479999997 9999999999987513 78999988654
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.38 E-value=1.6 Score=41.70 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=32.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.++++.|.|+ |.+|..++..|++. | ++|.+.+|+++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~ 42 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA-G-----WDLALVARSQDA 42 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC-C-----CEEEEEeCCHHH
Confidence 4568999996 99999999999998 7 899999998754
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.32 E-value=1.4 Score=42.69 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=32.0
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|+|.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~-G-----~~V~~~~r~~~~~~ 38 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK-G-----ARVVISSRNEENLE 38 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 68999997 78999999999999 7 88999999876543
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=85.18 E-value=4.4 Score=42.38 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=28.5
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCC--CEEEEeecccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITV--PVIISLAKGVE 201 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~--~ivIs~~kGi~ 201 (465)
.+.+.|++|+|.++...+++...++.. + .++|+.+.-+-
T Consensus 61 ~~~~vDivffa~g~~~s~~~~p~~~~a------G~~~~VIDnSSa~R 101 (366)
T TIGR01745 61 ALKALDIIITCQGGDYTNEIYPKLRES------GWQGYWIDAASSLR 101 (366)
T ss_pred cccCCCEEEEcCCHHHHHHHHHHHHhC------CCCeEEEECChhhh
Confidence 467899999999998777777766542 4 56777775553
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=85.02 E-value=2.1 Score=46.64 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=42.2
Q ss_pred eeEeecchhHHHhHHHhhhhcC------CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012349 17 LIHHTNGSLEERLDELRRLMGK------AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (465)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~ 79 (465)
.+++-.-+.++-++.++...+. .+....+|+|||+|..|.+.|..+++. | ++|++++
T Consensus 180 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAGl~AA~~la~~-G-----~~v~li~ 242 (515)
T TIGR03140 180 EFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAAIYAARK-G-----LRTAMVA 242 (515)
T ss_pred EEEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEe
Confidence 3455556667777777655332 223457899999999999999999998 7 8898885
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=85.00 E-value=1 Score=46.38 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=29.4
Q ss_pred CceEEEECccHHHHHHHHHHHHh--cCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS--YGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~--~G~~~~~~~V~l~~r~ 81 (465)
+++|+|||+|..|.++|..|++. .| ++|+++++.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G-----~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGG-----LPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCC-----CEEEEEeCC
Confidence 46899999999999999999874 14 899999995
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.97 E-value=1.2 Score=47.86 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|++|.|||+|..|...|..+++. | ++|.++.++.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~-g-----~~v~~~e~~~ 34 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQL-G-----ADVTVIERDG 34 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEEccC
Confidence 46899999999999999999998 7 8999998753
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=84.91 E-value=2.1 Score=44.30 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=35.5
Q ss_pred HHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 31 ELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 31 ~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++...++.. ..+||.|||+|-||...+..|.++ |. .+|++..|...
T Consensus 164 ~~~~~~~~l--~~k~vLvIGaGem~~l~a~~L~~~-g~----~~i~v~nRt~~ 209 (338)
T PRK00676 164 QELRRRQKS--KKASLLFIGYSEINRKVAYYLQRQ-GY----SRITFCSRQQL 209 (338)
T ss_pred HHHHHhCCc--cCCEEEEEcccHHHHHHHHHHHHc-CC----CEEEEEcCCcc
Confidence 333445544 447999999999999999999998 72 47999988863
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=84.85 E-value=1.3 Score=47.33 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.++|+|||+|.-|.+.|..|++. | ++|+++++.+
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~-G-----~~V~vie~~~ 166 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKA-G-----HSVTVFEALH 166 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 47899999999999999999998 7 8999999864
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=84.83 E-value=2.7 Score=41.72 Aligned_cols=113 Identities=26% Similarity=0.275 Sum_probs=65.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhc---CCCC--CCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSY---GYLR--DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~---G~~~--~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
..||.|+|+|+-|.++|..|.... |.-. ...+++++|+..-..+. + +.+ +... ..|...
T Consensus 25 d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~-r-~~l----~~~~---------~~~a~~- 88 (255)
T PF03949_consen 25 DQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD-R-EDL----NPHK---------KPFARK- 88 (255)
T ss_dssp G-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT-T-SSH----SHHH---------HHHHBS-
T ss_pred HcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc-C-ccC----Chhh---------hhhhcc-
Confidence 369999999999999999987641 4100 00358888887532211 0 011 0000 001110
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCC--CEEEEe--cCcchHHHHHHHHHHhhhccCCCCEE
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA--DIVING--LPSTETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~a--DiVIla--Vps~~l~~vl~~l~~~l~~~~~~~iv 193 (465)
. .......++.|+++.+ |++|=+ +|--+.+++++.+.++.+ +.+|
T Consensus 89 --------------------~-------~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e----rPII 137 (255)
T PF03949_consen 89 --------------------T-------NPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE----RPII 137 (255)
T ss_dssp --------------------S-------STTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS----SEEE
T ss_pred --------------------C-------cccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC----CCEE
Confidence 0 0111236889999988 987765 466789999999998765 3677
Q ss_pred EEeeccccc
Q 012349 194 ISLAKGVEA 202 (465)
Q Consensus 194 Is~~kGi~~ 202 (465)
..++|-.+.
T Consensus 138 F~LSNPt~~ 146 (255)
T PF03949_consen 138 FPLSNPTPK 146 (255)
T ss_dssp EE-SSSCGG
T ss_pred EECCCCCCc
Confidence 788887653
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=84.71 E-value=1 Score=47.85 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=28.3
Q ss_pred eEEEECccHHHHHHHHHHHH----hcCCCCCCeeEEEEecC
Q 012349 45 RIVGVGAGAWGSVFTAMLQD----SYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~----~~G~~~~~~~V~l~~r~ 81 (465)
.|+|||+|..|.++|..|++ . | ++|.+++++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~-G-----~~v~viE~~ 36 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTK-D-----LKVLLLDAV 36 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccC-C-----CeEEEEeCC
Confidence 58999999999999999998 6 6 899999984
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=1.7 Score=42.75 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=32.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++|.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 5 k~vlItGasggiG~~la~~l~~~-G-----~~Vi~~~r~~~~~~ 42 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSD-G-----WRVFATCRKEEDVA 42 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 57999998 99999999999998 7 89999999876443
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.54 E-value=1.7 Score=42.04 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=31.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+++.|.|+ |.+|.+++..|++. | .+|.+++|+.+..+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 39 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE-G-----WRVGAYDINEAGLA 39 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC-C-----CeEEEEeCCHHHHH
Confidence 57999996 88999999999998 7 89999999876443
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=84.48 E-value=24 Score=38.02 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=27.9
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCC--eeEEEEecC
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIWRRP 81 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~--~~V~l~~r~ 81 (465)
.+.+|+|-|| |.+|.++...+|.. ..|-++ ..+.|++..
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G-~~fG~~~~v~L~LlDi~ 163 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASG-EVFGMEEEISIHLLDSP 163 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCC-cccCCCCeEEEEEEcCC
Confidence 3589999997 99999999999864 233222 346677773
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.45 E-value=3.5 Score=41.65 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=25.6
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012349 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWR 79 (465)
Q Consensus 43 ~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~ 79 (465)
-++|+|||-|. +|-.+|..|.+. | ..|+++.
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~-~-----atVtv~h 195 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNR-N-----ATVSVCH 195 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHC-C-----CEEEEEe
Confidence 36899999988 999999999877 5 6787764
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=84.42 E-value=1.3 Score=47.00 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=31.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...|.|||+|.-|++.|..|+++ | ++|.++.+.+
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~-G-----~~V~llEr~~ 38 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE-G-----AQVLVIERGN 38 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEcCC
Confidence 35799999999999999999999 8 8999999875
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.42 E-value=1.5 Score=41.88 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=32.5
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
||+|.|.|+ |.+|.+++..|+++ | ++|++.+|+++..+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~-G-----~~Vi~~~r~~~~~~ 39 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA-G-----ARLYLAARDVERLE 39 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc-C-----CEEEEEeCCHHHHH
Confidence 468999995 99999999999998 7 89999999876443
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=84.29 E-value=3.8 Score=37.83 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaG-amGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
..++|+|||-+ .+|..++..|.++ | ..|++...
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~-~-----atVt~~h~ 68 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNK-G-----ATVTICHS 68 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHT-T------EEEEE-T
T ss_pred CCCEEEEECCcCCCChHHHHHHHhC-C-----CeEEeccC
Confidence 45799999987 5999999999988 6 77887643
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.19 E-value=2.1 Score=40.59 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=31.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|+|+ |.+|..++..|++. | ++|.+.+|+++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g-----~~V~~~~r~~~~~ 43 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-G-----YKVAITARDQKEL 43 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-C-----CEEEEeeCCHHHH
Confidence 67999996 99999999999988 7 7899999987543
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=84.16 E-value=1.2 Score=49.90 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=32.0
Q ss_pred CceEEEECccHHHHHHHHHHHH-hcCCCCCCeeEEEEecCchh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~-~~G~~~~~~~V~l~~r~~~~ 84 (465)
.++|+|||||..|.++|..|++ . | .+|.++++.+..
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~-G-----i~v~IiE~~~~~ 68 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFP-D-----ITTRIVERKPGR 68 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCC-C-----CcEEEEEcCCCC
Confidence 5789999999999999999998 6 6 899999987653
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=84.07 E-value=1.3 Score=46.08 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=29.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.|+|||+|.-|++.|..|++. | .+|.++++.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-G-----~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-G-----IETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECC
Confidence 589999999999999999998 7 899999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.90 E-value=2.3 Score=40.45 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=32.4
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.++|.|.|+ |.+|..++..|++. | ++|.+.+|+++..+
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 45 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA-G-----ATVAFNDGLAAEAR 45 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc-C-----CEEEEEeCCHHHHH
Confidence 378999997 99999999999998 7 88999998876443
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=83.78 E-value=1.9 Score=40.69 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=31.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|.|+ |.+|..++..|++. | ++|.+++|+++..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~-g-----~~v~~~~r~~~~~ 42 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAAD-G-----AKVVIYDSNEEAA 42 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCChhHH
Confidence 68999997 99999999999988 7 8899999987543
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.68 E-value=2.4 Score=40.79 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=32.8
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 45 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA-G-----AAVAIADLNQDGAN 45 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC-C-----CeEEEEeCChHHHH
Confidence 467999998 99999999999998 7 89999999875443
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.60 E-value=11 Score=39.23 Aligned_cols=42 Identities=29% Similarity=0.429 Sum_probs=30.6
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhh
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSV 85 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~ 85 (465)
.++++-||++||+|-||+.+....+.-.| .+ |-+-+|+-+.+
T Consensus 13 a~G~PiRVGlIGAG~mG~~ivtQi~~m~G-----m~vvaisd~~~~~a 55 (438)
T COG4091 13 AEGKPIRVGLIGAGEMGTGIVTQIASMPG-----MEVVAISDRNLDAA 55 (438)
T ss_pred ccCCceEEEEecccccchHHHHHHhhcCC-----ceEEEEecccchHH
Confidence 34567899999999999999998886435 44 44556665433
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.44 E-value=2.4 Score=41.92 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|.|||+|.-|.+.|..+++. | .+|.++.++..
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~-G-----~~V~liEk~~~ 59 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKA-G-----LKVAVFERKLS 59 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CeEEEEecCCC
Confidence 4799999999999999999988 7 89999988753
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.37 E-value=2.4 Score=43.38 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=33.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..++|.|.|+ |.+|.+++..|++. | ++|.+++|+++.++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~-G-----~~Vvl~~R~~~~l~ 46 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARR-G-----AKVVLLARGEEGLE 46 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 3467999997 89999999999998 7 89999999876544
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.34 E-value=1.5 Score=46.01 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=34.5
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATA 90 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~ 90 (465)
-|-|||||..|+++|..|++. | ..|.++.|+-..-|+|-.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kd-G-----RrVhVIERDl~EPdRivG 86 (509)
T KOG1298|consen 47 DVIIVGAGVAGSALAYALAKD-G-----RRVHVIERDLSEPDRIVG 86 (509)
T ss_pred cEEEECCcchHHHHHHHHhhC-C-----cEEEEEecccccchHHHH
Confidence 488999999999999999999 7 899999998766666543
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=83.30 E-value=1.6 Score=40.49 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=25.1
Q ss_pred EEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchh
Q 012349 47 VGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRS 84 (465)
Q Consensus 47 aIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~ 84 (465)
+|||||.-|.+.|..|.+. | .+ |.+++++...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g-----~~~v~v~e~~~~~ 33 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-G-----IDPVVVLERNDRP 33 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T--------EEEEESSSSS
T ss_pred CEECcCHHHHHHHHHHHhC-C-----CCcEEEEeCCCCC
Confidence 5999999999999999998 7 66 9999998653
|
... |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=83.27 E-value=1.6 Score=49.94 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||+|||+|.-|.+.|..|++. | ++++|+++.+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~-~---~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLL-D---PAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHh-C---CCCeEEEEecCCC
Confidence 7999999999999999999886 2 1289999998864
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.25 E-value=1.2 Score=46.12 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=29.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|||+|||+|--|..-|..|++. |+|+++.-+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-------hdVTLfEA~~ 40 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-------HDVTLFEADR 40 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-------cceEEEeccc
Confidence 468999999999999999999877 8999996553
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=83.25 E-value=1.6 Score=51.12 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
..+||+|||+|.-|.+.|..|++. | |+|++++..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-G-----h~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-G-----HNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-C-----CeEEEEccc
Confidence 457999999999999999999998 8 999999874
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=83.06 E-value=8.3 Score=42.90 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=28.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|+|+|.+|+.+...|+.. |. .++..++.+.
T Consensus 130 akVlVlG~Gg~~s~lv~sL~~s-G~----~~I~~vd~D~ 163 (637)
T TIGR03693 130 AKILAAGSGDFLTKLVRSLIDS-GF----PRFHAIVTDA 163 (637)
T ss_pred ccEEEEecCchHHHHHHHHHhc-CC----CcEEEEeccc
Confidence 6899999999999999999999 83 5676665554
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.05 E-value=2.2 Score=40.43 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=31.3
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
+++.|.| +|.+|.+++..|++. | .+|.+++|+++..
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~-G-----~~V~~~~r~~~~~ 38 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER-G-----WQVTATVRGPQQD 38 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC-C-----CEEEEEeCCCcch
Confidence 5788999 599999999999998 7 8999999987643
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=83.04 E-value=1.7 Score=45.88 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=31.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+.+|+|+|+|-.|.+.|..|.+. | .+|.++...++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~-G-----~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK-G-----IDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-C-----CeEEEEeeccc
Confidence 46899999999999999999999 8 89999988553
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=82.97 E-value=1.4 Score=45.29 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.|+|||+|..|+++|..|++. | +++|+++.+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G----~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-G----KIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-C----CceEEEEeCCCc
Confidence 389999999999999999988 5 168999998754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.96 E-value=2.6 Score=40.51 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=33.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..++|.|.|+ |.+|.+++..|++. | +.|.+++|+++..+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~-G-----~~v~~~~r~~~~~~ 49 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGA-G-----AHVLVNGRNAATLE 49 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc-C-----CeEEEEeCCHHHHH
Confidence 3468999997 88999999999998 7 89999999876443
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.90 E-value=2 Score=40.90 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=31.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|+|+ |.+|.+++..|++. | ++|++.+|+++..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~-G-----~~V~~~~r~~~~~ 42 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAE-G-----ARVVVTDRNEEAA 42 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 68999997 89999999999998 7 8899999997543
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=82.82 E-value=1.8 Score=43.66 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=29.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||.|+|+ |.+|..++..|+++ | ++|++++|..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~~~~ 34 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-G-----HDVVILDNLC 34 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 68999995 99999999999998 7 8999987653
|
|
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=82.78 E-value=5.1 Score=44.22 Aligned_cols=46 Identities=30% Similarity=0.354 Sum_probs=34.2
Q ss_pred cCHHHHhcC--CCEEEEec--CcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 152 TNLQEAVWD--ADIVINGL--PSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 152 ~dl~eal~~--aDiVIlaV--ps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.++.++++. +|++|=+. |--+.+++++.++.+.+ +.+|..++|-..
T Consensus 391 ~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~----rPIIFaLSNPt~ 440 (581)
T PLN03129 391 ASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNE----RPIIFALSNPTS 440 (581)
T ss_pred CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCC----CCEEEECCCCCC
Confidence 678899888 78776544 45688899999887755 467778887654
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.77 E-value=1.5 Score=47.39 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=31.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|.|||+|..|.++|..|++. | .+|+++++.+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~-G-----~~v~vlEr~~~ 37 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALA-G-----VDVAIVERRPN 37 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 4799999999999999999999 8 89999998764
|
|
| >COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=82.77 E-value=5.9 Score=38.87 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.||.|+|+|..|+..+..|+.. |. -++++++.+.-.+.
T Consensus 31 s~vlvvG~GglG~~~~~~la~a-Gv----g~l~i~D~d~v~~s 68 (254)
T COG0476 31 SRVLVVGAGGLGSPAAKYLALA-GV----GKLTIVDFDTVELS 68 (254)
T ss_pred CCEEEEecChhHHHHHHHHHHc-CC----CeEEEEcCCccccc
Confidence 5899999999999999999998 73 46888888764443
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.68 E-value=2.1 Score=39.99 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=31.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|++.|+|+..+|.+++..|++. | ++|.+.+|+++..+
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~-G-----~~V~v~~R~~~~~~ 37 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEK-G-----FHVSVIARREVKLE 37 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-c-----CEEEEEECCHHHHH
Confidence 6899999878889999999998 7 89999999875433
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.68 E-value=1.5 Score=45.65 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=29.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||+|||+|--|.+-|..|++. | ++|+++.++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G-----~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-G-----HEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEeCC
Confidence 689999999999999999998 7 8999998765
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.65 E-value=1.6 Score=47.31 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|.|||+|..|.++|..|++. | .+|.++++.+.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~-G-----i~V~llEr~~~ 39 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLC-G-----LNTVIVDKSDG 39 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeCCCc
Confidence 5799999999999999999998 8 89999998864
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=82.57 E-value=1.6 Score=45.21 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=30.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|.|||+|.-|.++|..|++. | ++.+|+++++.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~-g---~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA-A---PHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC-C---CCCEEEEEeCCCc
Confidence 4699999999999999999987 4 1268999999764
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=82.54 E-value=2.7 Score=38.64 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+.||+|+|+|..|..-+..+..- | ++|+.++.+.+..+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-G-----a~v~~~d~~~~~~~ 57 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-G-----AEVVVPDERPERLR 57 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T------EEEEEESSHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-C-----CEEEeccCCHHHHH
Confidence 468999999999999987777766 7 89999998876444
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.53 E-value=2.5 Score=40.81 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=31.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++|.|+|+ |.+|.+++..|++. | ++|.+.+|++...
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~-G-----~~v~~~~r~~~~~ 44 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAE-G-----ATVVVGDIDPEAG 44 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHc-C-----CEEEEEeCCHHHH
Confidence 68999998 99999999999998 7 8999999986543
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.52 E-value=2.9 Score=42.28 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=25.8
Q ss_pred CceEEEECcc-HHHHHHHHHHHHhcCCCCCCeeEEEE
Q 012349 43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVLIRIW 78 (465)
Q Consensus 43 ~mkIaIIGaG-amGsalA~~La~~~G~~~~~~~V~l~ 78 (465)
-++|+|||.| .+|..+|..|.+. | ..|++.
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~-g-----AtVtv~ 187 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNA-G-----ASVSVC 187 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CEEEEE
Confidence 3799999999 8999999999887 6 678776
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=82.50 E-value=1.3 Score=43.63 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=42.9
Q ss_pred hHHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 25 LEERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.++|+....+|+|...-. ..+|+|+|.|.+|+..+..|++. |. .+++|+|-+.-.+.
T Consensus 9 ~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRs-Gi----g~itlID~D~v~vT 68 (263)
T COG1179 9 YRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARS-GI----GRITLIDMDDVCVT 68 (263)
T ss_pred HHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHc-CC----CeEEEEeccccccc
Confidence 466777777777653222 25799999999999999999999 83 57899988764443
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=1.8 Score=46.00 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.++|.|+|+|..|.++|..|++. | ++|++++++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~-G-----~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL-G-----AKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCc
Confidence 47899999999999999999999 8 8999999975
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=82.49 E-value=2.1 Score=39.38 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=28.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|+|||+|.-|.+.|..|++. | .+|.+++..+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~-----~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-G-----AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T-----SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-C-----CeEEEEeccc
Confidence 689999999999999999987 6 8999996654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=82.48 E-value=15 Score=36.70 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=33.9
Q ss_pred CCeeEeecchhHHHhH-HHhhhhcCCCCC-CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhh
Q 012349 15 NGLIHHTNGSLEERLD-ELRRLMGKAEGD-PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRA 88 (465)
Q Consensus 15 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i 88 (465)
-|+......+||+--. .+..+..+.... -++|.-||+| ||+.. ..+++++| .+|+.++.++++.+.+
T Consensus 33 ~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcG-wG~~~-~~~a~~~g-----~~v~gitlS~~Q~~~a 101 (273)
T PF02353_consen 33 CAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCG-WGGLA-IYAAERYG-----CHVTGITLSEEQAEYA 101 (273)
T ss_dssp ----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-T-TSHHH-HHHHHHH-------EEEEEES-HHHHHHH
T ss_pred CeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHH-HHHHHHcC-----cEEEEEECCHHHHHHH
Confidence 3555556667776322 233334443333 2799999999 77664 44555535 6899999888877653
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.48 E-value=2 Score=46.70 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=29.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...|+|||+|.+|+++|..|++..+ ..+|.++.+..
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~----~~~V~VlEk~~ 80 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTN----LKKIALIERRS 80 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCC----CCEEEEEecCc
Confidence 3589999999999999999998512 14899999864
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.47 E-value=2.4 Score=41.02 Aligned_cols=37 Identities=16% Similarity=0.348 Sum_probs=31.6
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
+++|.|.| +|.+|.+++..|+++ | .+|.+.+|+.+..
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~-G-----~~v~~~~r~~~~~ 39 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ-G-----ATLGLVARRTDAL 39 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHH
Confidence 36899998 589999999999998 7 8999999987543
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.47 E-value=2.5 Score=42.17 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=32.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++|.|.|+ |.+|.++|..|+++ | ++|.+.+|+.+..+
T Consensus 41 k~vlItGasggIG~~la~~La~~-G-----~~Vi~~~R~~~~l~ 78 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR-G-----ATVVAVARREDLLD 78 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 67999997 99999999999998 7 89999999876544
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=82.46 E-value=1.7 Score=46.97 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|+|||+|..|...|..|++. | ++|+++++.+
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~-g-----~~V~v~e~~~ 176 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRA-G-----HTVTVFERED 176 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 7999999999999999999988 7 8999998765
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.37 E-value=1.7 Score=46.39 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=29.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||+|||+|.-|.+.|..+++. | .+|.+++++.
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~-g-----~~V~lie~~~ 33 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQN-G-----KNVTLIDEAD 33 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CcEEEEECCc
Confidence 6999999999999999999988 7 7899999863
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=82.36 E-value=2 Score=44.60 Aligned_cols=34 Identities=29% Similarity=0.227 Sum_probs=30.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.|||.|.|+ |.+|+.++..|.+. | ++|+.++|..
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~-G-----~~V~~v~r~~ 55 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAE-G-----HYIIASDWKK 55 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhC-C-----CEEEEEEecc
Confidence 489999998 99999999999988 7 8999999864
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=82.31 E-value=1.7 Score=43.27 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=30.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||.|.|+ |.+|..++..|++. | ++|++++|+++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 35 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ-G-----EEVRVLVRPTS 35 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC-C-----CEEEEEEecCc
Confidence 58999996 99999999999998 7 89999999865
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=82.19 E-value=1.7 Score=46.35 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=30.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++++|+|||+|--|.+.|..|+++ | ++|+++..++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~-g-----~~v~v~E~~~ 37 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKR-G-----YPVTVLEADP 37 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 446899999999999999999998 7 8999998765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 465 | ||||
| 1wpq_A | 349 | Ternary Complex Of Glycerol 3-Phosphate Dehydrogena | 1e-11 | ||
| 1x0x_A | 354 | Co-Structure Of Homo Sapiens Glycerol-3-Phosphate D | 3e-11 | ||
| 2pla_A | 349 | Crystal Structure Of Human Glycerol-3-Phosphate Deh | 1e-10 | ||
| 1x0v_A | 354 | Crystal Structure Of Homo Sapien Glycerol-3-Phospha | 3e-10 | ||
| 1yj8_A | 375 | Initial Structural Analysis Of Plasmodium Falciparu | 8e-10 | ||
| 4fgw_A | 391 | Structure Of Glycerol-3-phosphate Dehydrogenase, Gp | 3e-07 | ||
| 1txg_A | 335 | Structure Of Glycerol-3-Phosphate Dehydrogenase Fro | 1e-05 | ||
| 1z82_A | 335 | Crystal Structure Of Glycerol-3-Phosphate Dehydroge | 5e-05 | ||
| 3k96_A | 356 | 2.1 Angstrom Resolution Crystal Structure Of Glycer | 1e-04 | ||
| 1evy_A | 366 | Crystal Structure Of Leishmania Mexicana Glycerol-3 | 2e-04 |
| >pdb|1WPQ|A Chain A, Ternary Complex Of Glycerol 3-Phosphate Dehydrogenase 1 With Nad And Dihydroxyactone Length = 349 | Back alignment and structure |
|
| >pdb|1X0X|A Chain A, Co-Structure Of Homo Sapiens Glycerol-3-Phosphate Dehydrogenase 1 Complex With Nad Length = 354 | Back alignment and structure |
|
| >pdb|2PLA|A Chain A, Crystal Structure Of Human Glycerol-3-Phosphate Dehydrogenase 1-Like Protein Length = 349 | Back alignment and structure |
|
| >pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate Dehydrogenase 1 Length = 354 | Back alignment and structure |
|
| >pdb|1YJ8|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Glycerol-3- Phosphate Dehydrogenase Length = 375 | Back alignment and structure |
|
| >pdb|4FGW|A Chain A, Structure Of Glycerol-3-phosphate Dehydrogenase, Gpd1, From Sacharomyces Cerevisiae Length = 391 | Back alignment and structure |
|
| >pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From Archaeoglobus Fulgidus Length = 335 | Back alignment and structure |
|
| >pdb|1Z82|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Tm0378) From Thermotoga Maritima At 2.00 A Resolution Length = 335 | Back alignment and structure |
|
| >pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella Burnetii Length = 356 | Back alignment and structure |
|
| >pdb|1EVY|A Chain A, Crystal Structure Of Leishmania Mexicana Glycerol-3-phosphate Dehydrogenase Length = 366 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} Length = 375 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 9e-34
Identities = 83/422 (19%), Positives = 146/422 (34%), Gaps = 89/422 (21%)
Query: 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIW-RRPGRSVDRA 88
R L K + PL+I +G+G W S + ++ + ++V R+W R
Sbjct: 11 RNLFDKLKDGPLKISILGSGNWASAISKVVGTNAKNNYLFENEV--RMWIRDE-----FV 63
Query: 89 TAEHLFEVINS-REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCP 147
E + ++IN+ E+ KY L L +
Sbjct: 64 NGERMVDIINNKHENT-----------KY----LKGVPLPHN------------------ 90
Query: 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERIT-VPVIISLAKGVEAELEA 206
+ ++L + DAD++I +P + V I +I ISL KG +
Sbjct: 91 IVAHSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQ 150
Query: 207 VPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265
+ + I+ +P L G NIA ++ + ++ A I + +
Sbjct: 151 MKLC---SNYISDFLNIPC---SALSGANIAMDVAMENFSEATIGGNDKDSLVIWQRVFD 204
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL---TNESATSKSVYFAHCT---SEM 319
P+F + + + E+ G LKN+ + G L TN + A +EM
Sbjct: 205 LPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKS-------AIIRNGINEM 257
Query: 320 V-FITHLLAEEPEK----LAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIK--G 372
+ F + E G AD + L GRNA E K +
Sbjct: 258 ILFGKVFFQKFNENILLESCG--FADIITSFLAGRNAKCSAEFIKSTPKKTWEELENEIL 315
Query: 373 KGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAI 431
KG +QG +K Y ++ + +++ P+ +L+KI E P +
Sbjct: 316 KGQKLQGTVTLKYVYHMIKEKNMT-------------NEFPLFTVLHKISFENEDPSSLL 362
Query: 432 LE 433
Sbjct: 363 KT 364
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Length = 354 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 87/416 (20%), Positives = 153/416 (36%), Gaps = 87/416 (20%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLIRIW-RRPGRSVDRATAEHLFEVINS- 99
++ VG+G WGS ++ + + + +W + L E+IN+
Sbjct: 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEE-----DIGGKKLTEIINTQ 62
Query: 100 REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW 159
E+V KY L L + + V ++ +A
Sbjct: 63 HENV-----------KY----LPGHKLPPN------------------VVAVPDVVQAAE 89
Query: 160 DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINR 219
DADI+I +P ++ +++ + K ISL KGV+ + I +++I
Sbjct: 90 DADILIFVVPHQFIGKICDQLKGHLKAN---ATGISLIKGVDEGPNGLKLI---SEVIGE 143
Query: 220 ATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLV 278
G+P+ L G NIASE+ ++++ I C + L + ++ P+F + ++
Sbjct: 144 RLGIPM---SVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVD 200
Query: 279 THEVMGGLKNVYAIGAGMVAAL---TNESATSKSVYFAHCT---SEMV-FITHLLAEEPE 331
T E+ G LKNV A+GAG L N A A EM+ F +
Sbjct: 201 TVEICGALKNVVAVGAGFCDGLGFGDNTKA-------AVIRLGLMEMIAFAKLFCSGPVS 253
Query: 332 K-----LAGPLLADTYVTLLKGRNAWYGQELAKGRLTLD-LGDSIKGKGMIQGISAVKAF 385
G +AD T GRN + A+ +++ L + +QG +
Sbjct: 254 SATFLESCG--VADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETAREL 311
Query: 386 YELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEAL-RDETM 440
Y +L L V+ P+ +YK+ + + I E M
Sbjct: 312 YSILQHKGL-------------VDKFPLFMAVYKVCYEGQPVGEFIHCLQNHPEHM 354
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Length = 335 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 1e-26
Identities = 74/412 (17%), Positives = 137/412 (33%), Gaps = 106/412 (25%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+ +GAGA GS + L D+ G +V RIW G D + I++
Sbjct: 2 IVSILGAGAMGSALSVPLVDN-GN---EV--RIW---GTEFDTEILKS----ISAG---- 44
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
R R + + L++ + +A++V
Sbjct: 45 REHPR---LG--------------------------VKLNGVEIFWPEQLEKCLENAEVV 75
Query: 165 INGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
+ G+ + V I Y K+ I+ ++KG+ ++T + + R
Sbjct: 76 LLGVSTDGVLPVMSRILPYLKD----QYIVLISKGLIDFDN---SVLTVPEAVWRLKHDL 128
Query: 225 IENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283
E + + GP IA E+ + +E + + +F V D++ E+
Sbjct: 129 RERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTTDIIGTEIT 188
Query: 284 GGLKNVYAIGAGMVAAL----TNESATSKSVYFAHCTSEMVFITHLLAE----------E 329
LKNVY+I + E + +K V T + E +
Sbjct: 189 SALKNVYSIAIAWIRGYESRKNVEMSNAKG----------VIATRAINEMAELIEILGGD 238
Query: 330 PEKLAGPLLA---DTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQ-----GISA 381
E G L+ D T GRN G+ L KG ++D ++++ G
Sbjct: 239 RETAFG--LSGFGDLIATFRGGRNGMLGELLGKGL-SID--EAMEELERRGVGVVEGYKT 293
Query: 382 VKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 433
+ Y L S+ + + +L +Y++L + + E
Sbjct: 294 AEKAYRLSSKIN--------------ADT-KLLDSIYRVLYEGLKVEEVLFE 330
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} Length = 356 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 83/439 (18%), Positives = 147/439 (33%), Gaps = 115/439 (26%)
Query: 18 IHHTNGSLEERLDELRRLMGKA---EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL 74
+HH + L ++ E I +GAG+WG+ +L G KV
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSNAMEPFKHPIAILGAGSWGTALALVLARK-GQ---KV- 55
Query: 75 IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKD 134
R+W VD AE +N+R YL +
Sbjct: 56 -RLWSYESDHVDEMQAEG----VNNR------------YLP-------NYPFPET----- 86
Query: 135 GFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVII 194
LK +L+ ++ ++ +PS EV + + I
Sbjct: 87 -------------LKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAK---TRIA 130
Query: 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGA 253
KG+ +++ + + + GP++A+E+ +
Sbjct: 131 WGTKGLAKGSR------LLHEVVATE--LGQVPMAVISGPSLATEVAANLPTAVSLASNN 182
Query: 254 EKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL---TNESATSKSV 310
++ K L + L F V+ N D++ E+ G +KN+ AI G+ L +N A
Sbjct: 183 SQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAA---- 238
Query: 311 YFAHCTSEMVFITHLLAE----------EPEKLAGPLLA---DTYVTL--LKGRNAWYGQ 355
IT L E + E L G LA D +T + RN +G
Sbjct: 239 ----------LITRGLTEMGRLVSVFGGKQETLTG--LAGLGDLVLTCTDNQSRNRRFGL 286
Query: 356 ELAKGRLTLDLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPIL 414
L +G ++ + G I+G+ + L + + +E+ P+
Sbjct: 287 ALGEGV-DKK--EAQQAIGQAIEGLYNTDQVHALAQKHA--------------IEM-PLT 328
Query: 415 KMLYKILIMRESPIQAILE 433
+++IL P QA+ E
Sbjct: 329 FQVHRILHEDLDPQQAVQE 347
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Length = 366 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 5e-18
Identities = 72/415 (17%), Positives = 135/415 (32%), Gaps = 116/415 (27%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+ V G+GA+G+ +L +V +W V + N
Sbjct: 17 KAVVFGSGAFGTALAMVLSKK-CR---EV--CVWHMNEEEVRLVNEKR----ENVL---- 62
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
+LK L ++ + +++++A A+I+
Sbjct: 63 --------FLK-------GVQLASN------------------ITFTSDVEKAYNGAEII 89
Query: 165 INGLPSTETKEVFEEISRYWKERITVP--VIISLAKGVEAELEAVPRIITPTQMINRATG 222
+ +P+ + FE+ ++ KG+E P ++I
Sbjct: 90 LFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLK-----FPAEIIGEF-- 142
Query: 223 VPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFL--RRPHFTVWDNGDLVT 279
+P + L GP+ A E+ + I + L + + F W D V
Sbjct: 143 LPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDTVG 202
Query: 280 HEVMGGLKNVYAIGAGMVAAL---TNESATSKSVYFAHCTSEMVFITHLLAE-------- 328
EV +KNV AIG+G+ L N A I L E
Sbjct: 203 CEVASAVKNVLAIGSGVANGLGMGLNARAA--------------LIMRGLLEIRDLTAAL 248
Query: 329 --EPEKLAGPLLA---DTYVT----LLKGRNAWYGQELAKGRLTLDLGDSIKGKGM-IQG 378
+ + G LA D +T L RN G++L KG ++ + + +G
Sbjct: 249 GGDGSAVFG--LAGLGDLQLTCSSEL--SRNFTVGKKLGKGL-PIE--EIQRTSKAVAEG 301
Query: 379 ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 433
++ L Q V++ P+ +Y+I+ +++P A+ +
Sbjct: 302 VATADPLMRLAKQLK--------------VKM-PLCHQIYEIVYKKKNPRDALAD 341
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Length = 335 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 5e-17
Identities = 78/415 (18%), Positives = 155/415 (37%), Gaps = 130/415 (31%)
Query: 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRED 102
+R +GAG+WG+VF ML ++ G +V +W R E + ++IN
Sbjct: 14 EMRFFVLGAGSWGTVFAQMLHEN-GE---EV--ILWAR--------RKEIV-DLINVS-- 56
Query: 103 VLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDAD 162
Y++ ++ + ++ +L E + D
Sbjct: 57 ------HTSPYVE--------------------------ESKI-TVRATNDL-EEIKKED 82
Query: 163 IVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222
I++ +P +E + + ++++L+KG+E + ++++ G
Sbjct: 83 ILVIAIPVQYIREHLLRL------PVKPSMVLNLSKGIEIKTGK-----RVSEIVEEILG 131
Query: 223 VPIENILYLGGPNIASEIYNKEYANAR-----ICGAEKWRKPLAKFLRRPHFTVWDNGDL 277
P L GP+ A E+ A+ + A + K L K + +F V+ D+
Sbjct: 132 CPY---AVLSGPSHAEEV-------AKKLPTAVTLAGENSKELQKRISTEYFRVYTCEDV 181
Query: 278 VTHEVMGGLKNVYAIGAGMVAAL---TNESATSKSVYFAHCTSEMVFITHLLAE------ 328
V E+ G LKNV AI AG++ N A T + E
Sbjct: 182 VGVEIAGALKNVIAIAAGILDGFGGWDNAKAA--------------LETRGIYEIARFGM 227
Query: 329 ----EPEKLAGPLLA---DTYVTL--LKGRNAWYGQELAKGRLTLDLGDSIKGKGM-IQG 378
+ + G LA D VT RN +G+ +A+G ++ ++G
Sbjct: 228 FFGADQKTFMG--LAGIGDLMVTCNSRYSRNRRFGELIARGF-NPL--KLLESSNQVVEG 282
Query: 379 ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 433
VKA ++ ++ +++ PI + +Y+++ + P+Q++ +
Sbjct: 283 AFTVKAVMKIAKENK--------------IDM-PISEEVYRVVYEGKPPLQSMRD 322
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-08
Identities = 62/506 (12%), Positives = 136/506 (26%), Gaps = 179/506 (35%)
Query: 2 VQTNEVVNDSLSSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFT-A 60
+ + E ++ + S ++ + RL +V F
Sbjct: 45 ILSKEEIDHIIMS-----------KDAVSGTLRLFWTLLSKQEEMV--------QKFVEE 85
Query: 61 MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120
+L+ +Y +L + E ++ R Y+E R
Sbjct: 86 VLRINYKFLMSPI-------------------------KTEQRQPSMMTR----MYIEQR 116
Query: 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDAD----IVINGLP----STE 172
DR + +++ + L+ L++A+ + ++I+G+ +
Sbjct: 117 --DRLYNDNQVFAKYN--------VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 173 TKEVFEEISR--------YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
+V +W ++L +P ++
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW---------LNLK-----------NCNSPETVLE-----M 201
Query: 225 IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT--------VWDNGD 276
++ +LY PN S + RI + L + L+ + V +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 277 ----------LVT------HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMV 320
L+T + + + LT + S
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLLKYLDCRP 315
Query: 321 FITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGIS 380
L E P ++++ + + G T D + + I
Sbjct: 316 Q---DLPREVLTTN-PRR----LSII-------AESIRDGLATWDNWKHVNCDKLTTII- 359
Query: 381 AVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKIL-IMRES---PIQAILEAL- 435
+SSL+VL P E + ++ L + S P +L +
Sbjct: 360 ----------ESSLNVLEPAE------------YRKMFDRLSVFPPSAHIPTI-LLSLIW 396
Query: 436 RDETMNDPRDRIEIAQTHVFYRPSLL 461
D +D + ++ SL+
Sbjct: 397 FDVIKSDVMV---VVNK--LHKYSLV 417
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Length = 359 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 4e-06
Identities = 40/315 (12%), Positives = 80/315 (25%), Gaps = 53/315 (16%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+G G G F A L G V W + +
Sbjct: 6 TYAVLGLGNGGHAFAAYLALK-GQ---SV--LAWDIDAQRIKEIQDRGAIIA-------- 51
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
+ P + +++ AV DAD++
Sbjct: 52 --------EGPGLA------------------------GTAHPDLLTSDIGLAVKDADVI 79
Query: 165 INGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
+ +P+ + I+ Y E + + G + + P I + +
Sbjct: 80 LIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGAPEVTIGETSSML 139
Query: 225 IENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTHEVM 283
G + I A + + L P + +N + +
Sbjct: 140 FTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVL--PQYVAVENVLHTSLTNV 197
Query: 284 GGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYV 343
+ + ++ A ES T Y T + + + E +A +
Sbjct: 198 NAVMHPLPT---LLNAARCESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLN-VP 253
Query: 344 TLLKGRNAWYGQELA 358
++ + YGQ A
Sbjct: 254 SVCEWYKESYGQSPA 268
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 5e-06
Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 42/235 (17%)
Query: 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDV 103
+++ G G + + G +V R+ +R
Sbjct: 3 VKVCVCGGGNGAHTLSGLAASRDGV---EV--RVLTLFADEAER---------------- 41
Query: 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADI 163
+ + V + G + + P + + + A+ AD+
Sbjct: 42 WTKALGADELTVIVNEKDGTQ----------------TEVKSRPKVITKDPEIAISGADV 85
Query: 164 VINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV 223
VI +P+ + F+ ++ Y ++ + V + G E + + + +
Sbjct: 86 VILTVPAFAHEGYFQAMAPYVQDSALI-VGLPSQAGFEFQCRDILGDKAAAVSMMSFETL 144
Query: 224 PIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR----RPHFTVWDN 274
P + G + A + I G K PL+ P F + +
Sbjct: 145 PWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKH 199
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* Length = 358 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 7/154 (4%)
Query: 148 LKVVTNLQEAVWDADIVINGLP-STETKEVFEEISRYWKERITVPVIISLAKGVEAELEA 206
LKV ++ +EAV ADIVI LP + ++ ++ + E V ++ A++
Sbjct: 129 LKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK 188
Query: 207 VPRIITPTQMINRATGVP-IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265
VP ++ +Y+ + E NK Y +I + ++ P
Sbjct: 189 DLGREDLNITSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANL--- 245
Query: 266 RPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAA 299
V D VT V GL ++ A
Sbjct: 246 --IGPVCDMCSAVTATVYAGLLAYRDAVTKILGA 277
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 100.0 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 100.0 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 100.0 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 100.0 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 100.0 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 100.0 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 100.0 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.98 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.98 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.97 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.96 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.96 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.95 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.93 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.93 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.93 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.92 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.89 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.86 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.84 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.81 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.79 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.79 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.78 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.77 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.77 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.77 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.76 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.76 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.75 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.74 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.73 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.72 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.72 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.72 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.72 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.72 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.71 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.71 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.7 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.7 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.69 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.68 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.67 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.67 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.66 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.66 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.66 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.66 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.66 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.65 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.64 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.63 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.63 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.62 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.62 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.61 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.61 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.58 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.57 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.55 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.53 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.52 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.5 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.5 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.48 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.48 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.41 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.41 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.41 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.4 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.39 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.38 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.37 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.37 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.34 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.33 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.98 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.28 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.22 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.19 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.19 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.18 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.17 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.15 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.11 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.07 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.95 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.94 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.9 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.89 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.88 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.82 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.76 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.74 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.68 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.63 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.63 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.61 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.56 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.56 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.5 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.42 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.41 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.4 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.39 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.39 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.38 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.36 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.36 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.31 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.29 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.28 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.28 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.27 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.21 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.19 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.18 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.18 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.18 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.18 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.17 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.16 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.16 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.15 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.11 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.11 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.1 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.09 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.06 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.04 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 97.99 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.97 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.97 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.97 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.96 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 97.94 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.93 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 97.93 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.88 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.87 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.87 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 97.87 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.86 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 97.86 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 97.85 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 97.83 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.83 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.83 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 97.81 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.81 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.81 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 97.8 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 97.79 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 97.79 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.78 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.77 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 97.77 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 97.75 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.74 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.74 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 97.72 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 97.71 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.7 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 97.68 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.67 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.67 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.65 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 97.65 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.65 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.64 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 97.64 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.64 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.63 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 97.6 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.6 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 97.59 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 97.58 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.58 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.57 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 97.57 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.57 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.56 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.54 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.54 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.52 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.52 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.52 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.51 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 97.51 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.5 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.48 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.48 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 97.48 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 97.47 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.46 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.45 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.44 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 97.43 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 97.42 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.42 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.39 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.35 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.35 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.35 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.35 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.32 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.31 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.31 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.29 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.29 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.28 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.27 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.25 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.24 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.22 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.22 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 97.2 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.16 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.16 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.15 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.11 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.11 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.11 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.1 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.09 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.08 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.06 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.05 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.05 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.04 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.03 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.02 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.99 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.97 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 96.96 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 96.95 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.92 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 96.89 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.88 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.88 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.87 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.83 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.81 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.79 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.76 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.73 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 96.72 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.71 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 96.7 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 96.64 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.63 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 96.63 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 96.61 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 96.55 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 96.48 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.48 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 96.44 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 96.44 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 96.43 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 96.41 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 96.41 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.41 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 96.4 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 96.38 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.37 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.35 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.33 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 96.3 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.29 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.28 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.26 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 96.25 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 96.24 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 96.23 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.22 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 96.21 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.21 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.2 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 96.18 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.17 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.17 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 96.16 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.16 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.09 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 96.09 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.07 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 96.04 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 96.03 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 96.0 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 95.99 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 95.95 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 95.93 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 95.87 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.83 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.8 | |
| 3h2z_A | 382 | Mannitol-1-phosphate 5-dehydrogenase; PSI- protein | 95.79 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 95.76 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.68 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.67 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 95.66 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 95.65 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.61 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 95.6 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.59 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 95.58 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.57 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 95.53 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 95.5 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.5 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.47 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 95.45 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 95.42 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.38 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 95.37 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 95.31 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.22 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.13 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.11 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.04 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.04 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.02 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 94.92 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 94.91 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 94.82 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 94.79 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 94.73 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 94.61 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 94.57 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 94.41 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 94.41 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 94.27 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 94.27 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 94.24 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 94.22 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 94.14 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 94.12 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 94.06 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 94.02 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 93.98 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 93.97 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 93.91 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 93.82 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 93.81 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 93.79 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 93.74 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 93.67 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 93.67 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 93.66 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 93.66 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 93.58 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 93.57 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 93.56 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 93.54 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 93.54 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 93.53 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 93.53 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 93.52 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 93.52 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 93.51 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 93.5 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 93.49 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 93.46 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 93.43 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 93.29 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.13 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 93.09 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 93.01 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 92.99 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 92.86 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 92.86 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 92.76 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 92.71 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 92.63 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 92.49 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 92.46 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 92.37 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 92.35 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 92.3 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 92.29 | |
| 2nvu_B | 805 | Maltose binding protein/NEDD8-activating enzyme E1 | 92.25 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 92.17 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 92.15 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 92.14 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 92.09 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 92.08 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 92.07 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 92.05 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 91.99 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 91.98 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 91.97 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 91.81 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 91.78 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 91.7 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 91.69 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 91.63 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 91.62 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 91.6 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 91.6 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 91.55 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 91.5 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 91.5 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 91.36 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 91.35 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 91.32 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 91.32 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 91.26 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 91.25 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 91.13 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 91.08 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 91.07 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 91.02 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 90.99 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 90.99 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 90.98 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 90.96 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 90.94 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 90.91 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 90.84 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 90.84 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 90.8 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 90.77 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 90.73 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 90.7 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 90.68 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 90.65 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 90.54 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 90.36 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 90.34 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 90.34 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 90.23 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 90.22 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 90.16 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 90.15 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 90.1 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 90.03 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 89.93 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 89.92 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 89.83 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 89.81 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 89.81 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 89.72 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 89.65 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 89.63 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 89.58 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 89.45 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 89.08 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 89.08 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 89.08 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 88.97 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 88.89 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 88.88 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 88.83 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 88.81 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 88.8 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 88.78 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 88.74 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 88.72 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 88.66 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 88.47 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 88.47 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 88.37 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 88.33 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 88.32 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 88.3 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 88.3 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 88.25 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 88.24 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 88.21 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 88.21 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 88.18 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 88.14 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 88.09 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 88.02 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 87.99 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 87.95 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 87.94 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 87.93 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 87.92 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 87.81 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 87.55 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 87.54 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 87.54 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 87.46 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 87.38 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 87.34 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 87.27 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 87.24 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 87.23 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 87.22 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 87.21 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 87.21 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 87.17 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 87.12 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 87.06 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 87.05 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 86.91 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 86.85 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 86.8 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 86.74 |
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-68 Score=550.73 Aligned_cols=340 Identities=21% Similarity=0.290 Sum_probs=285.6
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCC-C--CCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGY-L--RDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~-~--~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
.++.||+|||+|+||||||..|+++ |. . ...++|++|.|+++... +.+.+.|++.+ +|++|||++
T Consensus 32 ~~p~KI~ViGaGsWGTALA~~la~n-g~~~~~~~~~~V~lw~r~~e~~~----~~~~e~in~~~-------~N~~YLpgv 99 (391)
T 4fgw_A 32 EKPFKVTVIGSGNWGTTIAKVVAEN-CKGYPEVFAPIVQMWVFEEEING----EKLTEIINTRH-------QNVKYLPGI 99 (391)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHH-HHHCTTTEEEEEEEECCCCBSSS----CBHHHHHTTTC-------CBTTTBTTC
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHc-CCCccccCCceEEEEEcchHhhh----HHHHHHHHhcC-------cCcccCCCC
Confidence 3467999999999999999999998 50 0 00025999999986432 34566677765 599999976
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
.|| .++.+++|++++++++|+||++||+++++++++++++++++ +.++|+++
T Consensus 100 -------~Lp------------------~~i~~t~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~---~~~iv~~~ 151 (391)
T 4fgw_A 100 -------TLP------------------DNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDS---HVRAISCL 151 (391)
T ss_dssp -------CCC------------------SSEEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCT---TCEEEECC
T ss_pred -------cCC------------------CCcEEeCCHHHHHhcCCEEEEECChhhhHHHHHHhccccCC---CceeEEec
Confidence 232 26899999999999999999999999999999999999887 78999999
Q ss_pred ccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeC-C---------hhHHHHHHHHHcCC
Q 012349 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-A---------EKWRKPLAKFLRRP 267 (465)
Q Consensus 198 kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~-~---------~~~~~~l~~ll~~~ 267 (465)
||++..+. ..+++++++.+.++. ++++++|||||.|++.+.|+.+++++ + +...+.++++|+++
T Consensus 152 KGie~~~~---~~~~~se~i~e~~~~---~~~vLsGPs~A~EVa~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~ 225 (391)
T 4fgw_A 152 KGFEVGAK---GVQLLSSYITEELGI---QCGALSGANIATEVAQEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRP 225 (391)
T ss_dssp CSCEEETT---EEECHHHHHHHHHCC---EEEEEECSCCHHHHHTTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBT
T ss_pred cccccccc---cchhHHHHHHHHhCc---cceeccCCchHHHhhcCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCC
Confidence 99987631 347899999998873 57899999999999999999887643 2 12468899999999
Q ss_pred CCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHh---CCCcchhccC-chhhhhh
Q 012349 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLL---AEEPEKLAGP-LLADTYV 343 (465)
Q Consensus 268 g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~---G~~~~t~~g~-glgDl~~ 343 (465)
+|++|.++|++|+|+|||+|||||||+||++|+++| +|++|+||++|++||.+|+.++ |.++.||.|+ |+|||++
T Consensus 226 ~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G-~NakAALitrGl~Em~rlg~al~~~g~~~tt~~glaGlGDLi~ 304 (391)
T 4fgw_A 226 YFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWG-NNASAAIQRVGLGEIIRFGQMFFPESREETYYQESAGVADLIT 304 (391)
T ss_dssp TEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHSTTTHHHHHH
T ss_pred CEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHHHHHHhcccCCceeecCCCcccceeE
Confidence 999999999999999999999999999999999997 7999999999999999999999 4456678887 9999999
Q ss_pred cccCchhHHHHHHHhc-CCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 344 TLLKGRNAWYGQELAK-GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 344 T~~~sRN~~~G~~l~~-g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
||+.||||+||+.|++ |++.+++++++.+++++||+.|+++++++++++|+. .+ |||+++||+|||
T Consensus 305 Tc~sSRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~ta~~v~~l~~~~~v~------------~e-mPI~~~vy~IL~ 371 (391)
T 4fgw_A 305 TCAGGRNVKVARLMATSGKDAWECEKELLNGQSAQGLITCKEVHEWLETCGSV------------ED-FPLFEAVYQIVY 371 (391)
T ss_dssp HHHSSHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHTCS------------TT-CHHHHHHHHHHH
T ss_pred EecCCccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHHHHHHHHHHHHHcCCC------------CC-CCHHHHHHHHHh
Confidence 9988999999999996 899988888776667999999999999999999952 25 899999999999
Q ss_pred cCCCHHHHHHHHHhcccC
Q 012349 423 MRESPIQAILEALRDETM 440 (465)
Q Consensus 423 ~~~~~~~~~~~ll~~~~~ 440 (465)
++.+|.+....++++..+
T Consensus 372 ~~~~~~~~~~~l~~~~~~ 389 (391)
T 4fgw_A 372 NNYPMKNLPDMIEELDLH 389 (391)
T ss_dssp SCCCSTTHHHHHCC----
T ss_pred CCCCHHHHHHHHHhcccC
Confidence 998776655444443433
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-62 Score=498.29 Aligned_cols=325 Identities=22% Similarity=0.328 Sum_probs=289.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++ +.+ .|+.|+|+.
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~-G-----~~V~l~~r~~~~~~~i~---------~~~-------~~~~~l~g~---- 81 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARK-G-----QKVRLWSYESDHVDEMQ---------AEG-------VNNRYLPNY---- 81 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSCHHHHHHHH---------HHS-------SBTTTBTTC----
T ss_pred cCCeEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHH---------HcC-------CCcccCCCC----
Confidence 358999999999999999999999 7 99999999987766533 222 366777764
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.+| .++.+++|+++++.++|+||++||+++++++++++.+++++ ++++|+++||++
T Consensus 82 ---~l~------------------~~i~~t~d~~ea~~~aDvVilaVp~~~~~~vl~~i~~~l~~---~~ivvs~~kGi~ 137 (356)
T 3k96_A 82 ---PFP------------------ETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDA---KTRIAWGTKGLA 137 (356)
T ss_dssp ---CCC------------------TTEEEESCHHHHHTTCCEEEECCCHHHHHHHHHHHGGGCCT---TCEEEECCCSCB
T ss_pred ---ccC------------------CCeEEECCHHHHHhcCCEEEECCCHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 121 25788999999999999999999999999999999999887 789999999999
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEE-eCChhHHHHHHHHHcCCCCeEEecCChHHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWDNGDLVTH 280 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~-~~~~~~~~~l~~ll~~~g~~v~~s~Di~gv 280 (465)
++ + .++++++++.+|. .++++++||+|+.|++.+.++.+++ +.+++.++.++++|++.+|++|+++|++|+
T Consensus 138 ~~-----t-~~~se~i~~~l~~--~~~~vlsgP~~a~ev~~g~pt~~via~~~~~~~~~v~~lf~~~~~rv~~~~Di~g~ 209 (356)
T 3k96_A 138 KG-----S-RLLHEVVATELGQ--VPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGV 209 (356)
T ss_dssp TT-----T-BCHHHHHHHHHCS--CCEEEEESSCCHHHHHTTCCEEEEEEESCHHHHHHHHHHHCCSSEEEEEESCHHHH
T ss_pred cC-----c-cCHHHHHHHHcCC--CCEEEEECccHHHHHHcCCCeEEEEecCCHHHHHHHHHHhCCCCeeEEEeCCHHHH
Confidence 86 5 7899999999873 4678999999999999999887765 457788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHHH
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQEL 357 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l 357 (465)
||+|++||++|+++|+++|++++ +|+++++++++++||.++++++|++++||+|+ |+|||++||+ .||||+||..|
T Consensus 210 e~~galkNviaia~G~~~gl~~g-~N~~aal~~~~l~E~~~l~~a~G~~~~t~~gl~g~gDl~~tc~s~~sRN~~~G~~l 288 (356)
T 3k96_A 210 ELCGSVKNILAIATGISDGLKLG-SNARAALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLVLTCTDNQSRNRRFGLAL 288 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHhCCChHhhcccchhhHHHHhccCCCCccHHHHHHH
Confidence 99999999999999999999997 78899999999999999999999999999997 9999999996 59999999999
Q ss_pred hcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhc
Q 012349 358 AKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRD 437 (465)
Q Consensus 358 ~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~~ 437 (465)
++|++++++++++ ++++||++|+++++++++++|+ + +||+++||+||+++.+|.+++..||.|
T Consensus 289 ~~g~~~~~~~~~~--~~~~eG~~t~~~~~~la~~~~v--------------~-~Pi~~~v~~il~~~~~~~~~~~~l~~r 351 (356)
T 3k96_A 289 GEGVDKKEAQQAI--GQAIEGLYNTDQVHALAQKHAI--------------E-MPLTFQVHRILHEDLDPQQAVQELLER 351 (356)
T ss_dssp HHTCCHHHHHHHH--CSCCSHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHSCCCHHHHHHHHHSC
T ss_pred HCCCCHHHHHHHc--CCccchHHHHHHHHHHHHHcCC--------------C-CcHHHHHHHHHhCCCCHHHHHHHHHcC
Confidence 9999998887766 4689999999999999999994 7 899999999999999999999999999
Q ss_pred ccCCC
Q 012349 438 ETMND 442 (465)
Q Consensus 438 ~~~~~ 442 (465)
+.|.|
T Consensus 352 ~~~~e 356 (356)
T 3k96_A 352 SPKAE 356 (356)
T ss_dssp C----
T ss_pred CCCCC
Confidence 98865
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=377.37 Aligned_cols=344 Identities=23% Similarity=0.333 Sum_probs=281.8
Q ss_pred HhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCC--CeeEEEEecCch-----hhhhhhhhhhHHHHhchhhhH
Q 012349 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGR-----SVDRATAEHLFEVINSREDVL 104 (465)
Q Consensus 32 ~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~--~~~V~l~~r~~~-----~~~~i~~~~l~~~i~~~~~~~ 104 (465)
.|+||.....++|||+|||+|+||+++|..|+++ |...+ .++|++|+|+++ .++. +++.+
T Consensus 10 ~~~~~~~~~~~~~kI~iIGaG~mG~alA~~L~~~-G~~~~~~~~~V~~~~r~~~~~~~~~~~~---------l~~~~--- 76 (375)
T 1yj8_A 10 YRNLFDKLKDGPLKISILGSGNWASAISKVVGTN-AKNNYLFENEVRMWIRDEFVNGERMVDI---------INNKH--- 76 (375)
T ss_dssp CCSHHHHHHHSCBCEEEECCSHHHHHHHHHHHHH-HHHCTTBCSCEEEECCSCC---CCHHHH---------HHHHC---
T ss_pred HHHHHhcCccCCCEEEEECcCHHHHHHHHHHHHc-CCccCCCCCeEEEEECChhhhhHHHHHH---------HHhcC---
Confidence 3555554444568999999999999999999988 41000 068999999987 4443 22221
Q ss_pred HhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHH--
Q 012349 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR-- 182 (465)
Q Consensus 105 ~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~-- 182 (465)
.+..|+++. .++ .++.+++|+++++.++|+||+|||+++++++++++.+
T Consensus 77 ----~~~~~~~~~-------~~~------------------~~i~~~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~ 127 (375)
T 1yj8_A 77 ----ENTKYLKGV-------PLP------------------HNIVAHSDLASVINDADLLIFIVPCQYLESVLASIKESE 127 (375)
T ss_dssp ----BCTTTSTTC-------BCC------------------TTEEEESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC--
T ss_pred ----cccccCCcc-------cCc------------------CCeEEECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhh
Confidence 244455432 111 2577888988888999999999999999999999998
Q ss_pred --hhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHH
Q 012349 183 --YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKP 259 (465)
Q Consensus 183 --~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~ 259 (465)
++++ ++++|+++||+++.. .+...+++.+.+.++ .++.+++||+++.++..+.++.++++ .+++..+.
T Consensus 128 ~~~l~~---~~ivvs~~~Gi~~~~---~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~ 198 (375)
T 1yj8_A 128 SIKIAS---HAKAISLTKGFIVKK---NQMKLCSNYISDFLN---IPCSALSGANIAMDVAMENFSEATIGGNDKDSLVI 198 (375)
T ss_dssp -CCCCT---TCEEEECCCSCEEET---TEEECHHHHHHHHSS---SCEEEEECSCCHHHHHTTCCEEEEEECSCHHHHHH
T ss_pred hccCCC---CCEEEEeCCccccCC---ccccCHHHHHHHHcC---CCEEEEeCCchHHHHHhCCCeEEEEecCCHHHHHH
Confidence 8876 789999999998730 024567888887765 34678999999999998887766654 46677899
Q ss_pred HHHHHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHh--CCCcchhccC-
Q 012349 260 LAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLL--AEEPEKLAGP- 336 (465)
Q Consensus 260 l~~ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~--G~~~~t~~g~- 336 (465)
++++|++.+|+++.++|+.+++|++++||++++++|++++++++ +|...++++++++|+..+++++ |.+++++.++
T Consensus 199 v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~-~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~ 277 (375)
T 1yj8_A 199 WQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLP-TNSKSAIIRNGINEMILFGKVFFQKFNENILLESC 277 (375)
T ss_dssp HHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHSSCCCGGGGGSTT
T ss_pred HHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccc
Confidence 99999999999999999999999999999999999999999997 5677789999999999999999 5889999885
Q ss_pred chhhhhhcccCchhHHHHHHHhc-C--CChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcH
Q 012349 337 LLADTYVTLLKGRNAWYGQELAK-G--RLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPI 413 (465)
Q Consensus 337 glgDl~~T~~~sRN~~~G~~l~~-g--~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi 413 (465)
|+||++.||..|||+++|..+++ | .+++++++++.+++..||..++++++++++++|+. .+ +|+
T Consensus 278 g~~dl~~t~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~~a~~~gv~------------~~-~P~ 344 (375)
T 1yj8_A 278 GFADIITSFLAGRNAKCSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKEKNMT------------NE-FPL 344 (375)
T ss_dssp THHHHHHHHSSSSHHHHHHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCG------------GG-CHH
T ss_pred cccceeEeeeCCccHHHHHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHHHHHHhCCC------------CC-CCH
Confidence 89999999988999999999998 8 67777766554567899999999999999999940 06 899
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhcccC
Q 012349 414 LKMLYKILIMRESPIQAILEALRDETM 440 (465)
Q Consensus 414 ~~~vy~il~~~~~~~~~~~~ll~~~~~ 440 (465)
++++|++++++.+|.+++..||.++.+
T Consensus 345 ~~~v~~~~~~~~~~~~~~~~l~~~~~~ 371 (375)
T 1yj8_A 345 FTVLHKISFENEDPSSLLKTFMNNKIN 371 (375)
T ss_dssp HHHHHHHHHSCCCTTHHHHHHSSCCCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHcCcHh
Confidence 999999999999999999999987553
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=348.73 Aligned_cols=332 Identities=22% Similarity=0.313 Sum_probs=273.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCC--CeeEEEEecCch-----hhhhhhhhhhHHHHhchhhhHHhhhhcccccc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPGR-----SVDRATAEHLFEVINSREDVLRRLIRRCAYLK 115 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~--~~~V~l~~r~~~-----~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~ 115 (465)
+|||+|||+|+||+++|..|+++ |...+ +++|++|+|+++ .++. +++.+ .+..|++
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~-g~~~~~~~~~V~~~~r~~~~~~~~~~~~---------l~~~~-------~~~~~~~ 70 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGN-AAQLAQFDPRVTMWVFEEDIGGKKLTEI---------INTQH-------ENVKYLP 70 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH-HHHCTTEEEEEEEECCCCBSSSSBHHHH---------HHHHS-------CCTTTST
T ss_pred CCeEEEECCCHHHHHHHHHHHhc-CCcccCCCCeEEEEEcChhhhhhHHHHH---------HHhcC-------cccccCC
Confidence 47999999999999999999988 41000 068999999987 4433 22211 1223333
Q ss_pred hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEE
Q 012349 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (465)
Q Consensus 116 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs 195 (465)
+. .++ .++.+++|+++++.++|+||+|||++.++++++++.+++++ +++||+
T Consensus 71 ~~-------~~~------------------~~~~~~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~---~~ivv~ 122 (354)
T 1x0v_A 71 GH-------KLP------------------PNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKA---NATGIS 122 (354)
T ss_dssp TC-------CCC------------------TTEEEESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCT---TCEEEE
T ss_pred cc-------cCc------------------cCeEEEcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCC---CCEEEE
Confidence 21 110 14677889988889999999999999999999999998876 789999
Q ss_pred eeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCCCCeEEec
Q 012349 196 LAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDN 274 (465)
Q Consensus 196 ~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~~s 274 (465)
++||+..+. .+...+++.+.+.+| .+.++++||+++.++..+.++.++++ .+++..+.++++|+..+++++.+
T Consensus 123 ~~~Gi~~~~---~~~~~l~~~l~~~~~---~~~~v~~gp~~a~~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~ 196 (354)
T 1x0v_A 123 LIKGVDEGP---NGLKLISEVIGERLG---IPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVV 196 (354)
T ss_dssp CCCCBCSSS---SSCCBHHHHHHHHHT---CCEEEEECSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHCBTTEEEEEE
T ss_pred ECCccCCCC---CccccHHHHHHHHcC---CCEEEEECCCcHHHHHhcCCceEEEEECCHHHHHHHHHHhCCCCEEEEEc
Confidence 999998510 034567788887776 24678999999999988887665554 45677899999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCC---CcchhccC-chhhhhhcccCchh
Q 012349 275 GDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAE---EPEKLAGP-LLADTYVTLLKGRN 350 (465)
Q Consensus 275 ~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~---~~~t~~g~-glgDl~~T~~~sRN 350 (465)
+|+.+++|++++||++++++|++.+++++ +|...++++++++|+..+++++|. +++++.++ |++|++.||..|||
T Consensus 197 ~di~~~~~~k~~~N~~~~~~g~~~~~~~~-~n~~~~~~~~~~~E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~~~~ 275 (354)
T 1x0v_A 197 QEVDTVEICGALKNVVAVGAGFCDGLGFG-DNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRN 275 (354)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHHCHH
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHHhhccccc
Confidence 99999999999999999999999999997 567778999999999999999998 89999885 89999999988999
Q ss_pred HHHHHHHhc-CCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHH
Q 012349 351 AWYGQELAK-GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQ 429 (465)
Q Consensus 351 ~~~G~~l~~-g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~ 429 (465)
+++|..+++ |++++++.+++.+++..||..++..++++++++|++ .+ +|+++++|++++++++|.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~~~gv~------------~~-~P~~~~v~~~~~~~~~~~~ 342 (354)
T 1x0v_A 276 RKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLV------------DK-FPLFMAVYKVCYEGQPVGE 342 (354)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHTCG------------GG-SHHHHHHHHHHHSCCCGGG
T ss_pred HHHHHHHHhcCCCHHHHHHhhcCCcEeehHHHHHHHHHHHHHhCCC------------CC-CCHHHHHHHHHhCCCCHHH
Confidence 999999997 888777766554567899999999999999999930 16 8999999999999999999
Q ss_pred HHHHHHhccc
Q 012349 430 AILEALRDET 439 (465)
Q Consensus 430 ~~~~ll~~~~ 439 (465)
++.+||.++.
T Consensus 343 ~~~~l~~~~~ 352 (354)
T 1x0v_A 343 FIHCLQNHPE 352 (354)
T ss_dssp THHHHHTCCS
T ss_pred HHHHHHcCCC
Confidence 9999998753
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=344.99 Aligned_cols=319 Identities=24% Similarity=0.413 Sum_probs=262.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++|||+|||+|+||+++|..|+++ | ++|++|+|++++++.++. .+ .+. |+++..
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~-G-----~~V~~~~r~~~~~~~l~~---------~g-------~~~-~~~~~~--- 66 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHEN-G-----EEVILWARRKEIVDLINV---------SH-------TSP-YVEESK--- 66 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHH---------HS-------CBT-TBTTCC---
T ss_pred cCCcEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH---------hC-------Ccc-cCCCCe---
Confidence 468999999999999999999999 8 999999999877665322 11 122 443310
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+ ++.+++++++ ++++|+||+|||+++++++++++.+ + ++++|+++||++
T Consensus 67 -----------------------~-~~~~~~~~~~-~~~aDvVil~vk~~~~~~v~~~l~~---~---~~~vv~~~nGi~ 115 (335)
T 1z82_A 67 -----------------------I-TVRATNDLEE-IKKEDILVIAIPVQYIREHLLRLPV---K---PSMVLNLSKGIE 115 (335)
T ss_dssp -----------------------C-CSEEESCGGG-CCTTEEEEECSCGGGHHHHHTTCSS---C---CSEEEECCCCCC
T ss_pred -----------------------e-eEEEeCCHHH-hcCCCEEEEECCHHHHHHHHHHhCc---C---CCEEEEEeCCCC
Confidence 1 3567788888 8899999999999999999988766 3 689999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
++ +...+++.+.+.++ ....++.||+++.++..|.++.+++++.+ .+.++++|+..+++++.++|+.|++
T Consensus 116 ~~-----~~~~l~~~~~~~~~---~~~~~~~~P~~~~~~~~g~~~~~~~g~~~--~~~~~~ll~~~g~~~~~~~di~~~~ 185 (335)
T 1z82_A 116 IK-----TGKRVSEIVEEILG---CPYAVLSGPSHAEEVAKKLPTAVTLAGEN--SKELQKRISTEYFRVYTCEDVVGVE 185 (335)
T ss_dssp TT-----TCCCHHHHHHHHTC---CCEEEEESSCCHHHHHTTCCEEEEEEETT--HHHHHHHHCCSSEEEEEESCHHHHH
T ss_pred CC-----ccCcHHHHHHHHcC---CceEEEECCccHHHHhCCCceEEEEEehh--HHHHHHHhCCCCEEEEecCchHHHH
Confidence 76 35678888877664 34678999999999998887655555443 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHHHHHh
Q 012349 282 VMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYGQELA 358 (465)
Q Consensus 282 ~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G~~l~ 358 (465)
|++++||++++++|+..+++++ +|...+++..++.|+..+++++|.+++++.++ +++|++.||. .+||+++|+++.
T Consensus 186 ~~k~l~N~~~~~~g~~~g~~~~-~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~~~~~t~~s~~~~n~~~~~~~~ 264 (335)
T 1z82_A 186 IAGALKNVIAIAAGILDGFGGW-DNAKAALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIA 264 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHHHHHhCCChhhhcccccccceeeeccCccCcHHHHHHHHh
Confidence 9999999999999999999887 66777899999999999999999999998886 7999998884 699999999999
Q ss_pred cCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHHHhcc
Q 012349 359 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEALRDE 438 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~ll~~~ 438 (465)
+|++++++... .+.++||....+.++++++++|+ + +|+++++|++++++.+|.+++..||.++
T Consensus 265 ~g~~~~~~~~~--~g~~~e~~~~~~~v~~~a~~~gv--------------~-~P~~~~v~~~~~~~~~~~~~~~~l~~~~ 327 (335)
T 1z82_A 265 RGFNPLKLLES--SNQVVEGAFTVKAVMKIAKENKI--------------D-MPISEEVYRVVYEGKPPLQSMRDLMRRS 327 (335)
T ss_dssp HTCCHHHHHHT--CSSCCTHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHSCCCHHHHHHHHHC--
T ss_pred CCCCHHHHHHh--cCCeeeHHHHHHHHHHHHHHhCC--------------C-CcHHHHHHHHHhCCCCHHHHHHHHHcCC
Confidence 99887665532 24588999999999999999995 6 8999999999999999999999999999
Q ss_pred cCCCccc
Q 012349 439 TMNDPRD 445 (465)
Q Consensus 439 ~~~~~~~ 445 (465)
.+.|+++
T Consensus 328 ~~~~~~~ 334 (335)
T 1z82_A 328 LKDEFWA 334 (335)
T ss_dssp -------
T ss_pred ccccccc
Confidence 9988665
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=330.48 Aligned_cols=324 Identities=22% Similarity=0.358 Sum_probs=270.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
||+|||+|+||+++|..|+++ | ++|++|+|++++++.++. .+ .+..++++.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~-G-----~~V~~~~r~~~~~~~l~~---------~~-------~~~~~~~~~------- 67 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKK-C-----REVCVWHMNEEEVRLVNE---------KR-------ENVLFLKGV------- 67 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTT-E-----EEEEEECSCHHHHHHHHH---------HT-------BCTTTSTTC-------
T ss_pred eEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHH---------cC-------ccccccccc-------
Confidence 999999999999999999988 7 999999999876664322 11 123343331
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHH----HHHhhhccCCCCEEEEeeccc
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEE----ISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~----l~~~l~~~~~~~ivIs~~kGi 200 (465)
.++ .++.+++++++++.++|+||+|||++++++++++ +.+++++. +++||+++||+
T Consensus 68 ~~~------------------~~~~~~~~~~~~~~~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~--~~ivv~~~~gi 127 (366)
T 1evy_A 68 QLA------------------SNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK--QVPVLVCTKGI 127 (366)
T ss_dssp BCC------------------TTEEEESCHHHHHTTCSSEEECCCHHHHHHHHHHHCHHHHHHHHHH--TCCEEECCCSC
T ss_pred ccc------------------cceeeeCCHHHHHcCCCEEEECCChHHHHHHHHHhHHHHHHhcCcc--CCEEEEECCcC
Confidence 110 1467788998888999999999999999999999 99888640 26899999999
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCC--CCeEEecCCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRP--HFTVWDNGDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~--g~~v~~s~Di 277 (465)
.++ +...+++.+.+.+|. .+..++.||+++.++..+.++.+..+ .+++..+.++++|+.. +++++.++|+
T Consensus 128 ~~~-----~~~~~~~~l~~~~~~--~~~~v~~gp~~~~~~~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~g~~~~~~~di 200 (366)
T 1evy_A 128 ERS-----TLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWATTDT 200 (366)
T ss_dssp CTT-----TCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEESCH
T ss_pred CCc-----cccCHHHHHHHHCCC--CcEEEEeCCChHHHHHhCCceEEEEecCCHHHHHHHHHHhcCCCCeEEEEEcCCc
Confidence 876 356677877776653 35678999999999888877665554 4667789999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhHHHH
Q 012349 278 VTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNAWYG 354 (465)
Q Consensus 278 ~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~~~G 354 (465)
.+++|++++||++++++|++.+++++ +|...+++..++.|+..+++++|.+++++.++ +++|++.||. .+||+++|
T Consensus 201 ~~~~~~k~~~n~~~~~~~~~~~~~~~-~n~~~~~~~~~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 279 (366)
T 1evy_A 201 VGCEVASAVKNVLAIGSGVANGLGMG-LNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVG 279 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHHHhhccCC-ccHHHHHHHHHHHHHHHHHHHhCCCCccccccccchhheeeecCCCCchHHHH
Confidence 99999999999999999999999987 56677899999999999999999999888875 7899998884 67999999
Q ss_pred HHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHHHHH
Q 012349 355 QELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILEA 434 (465)
Q Consensus 355 ~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~~~l 434 (465)
+++.+|++.++++.. .+..+||...+..++++++++|+ + +|+++++|++++++.+|.+++..|
T Consensus 280 ~~~~~g~~~~~~~~~--~~~~~e~~~~~~~v~~~a~~~gv--------------~-~P~~~~v~~~~~~~~~~~~~~~~l 342 (366)
T 1evy_A 280 KKLGKGLPIEEIQRT--SKAVAEGVATADPLMRLAKQLKV--------------K-MPLCHQIYEIVYKKKNPRDALADL 342 (366)
T ss_dssp HHHHTTCCHHHHHC-----CCCHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHhCCCCHHHHHHH--cCCeeehHHHHHHHHHHHHHhCC--------------C-CcHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999887655422 23478999999999999999995 6 899999999999999999999999
Q ss_pred HhcccCCC
Q 012349 435 LRDETMND 442 (465)
Q Consensus 435 l~~~~~~~ 442 (465)
|.++.+.|
T Consensus 343 ~~~~~~~~ 350 (366)
T 1evy_A 343 LSCGLQDE 350 (366)
T ss_dssp GGGCSCCC
T ss_pred HcCCcccc
Confidence 99999887
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=292.79 Aligned_cols=318 Identities=21% Similarity=0.333 Sum_probs=252.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec--CchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r--~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
|||+|||+|+||+++|..|+++ | ++|++|+| +++.++.+ ++.+ .+..+ +.
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~---------~~~~-------~~~~~--g~---- 52 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN-G-----NEVRIWGTEFDTEILKSI---------SAGR-------EHPRL--GV---- 52 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH-C-----CEEEEECCGGGHHHHHHH---------HTTC-------CBTTT--TB----
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEEccCCHHHHHHH---------HHhC-------cCccc--Cc----
Confidence 6999999999999999999999 7 89999999 77655542 2211 00111 10
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEec--CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVT--NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~--dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
. +.++.+++ ++.+++.++|+||+|||++.++++++++.+ +++ +++||+++||
T Consensus 53 ---~-------------------~~~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~i~~-l~~---~~~vv~~~ng 106 (335)
T 1txg_A 53 ---K-------------------LNGVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILP-YLK---DQYIVLISKG 106 (335)
T ss_dssp ---C-------------------CCSEEEECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTT-TCC---SCEEEECCCS
T ss_pred ---c-------------------ccceEEecHHhHHHHHhcCCEEEEcCChHHHHHHHHHHhc-CCC---CCEEEEEcCc
Confidence 0 01345666 787888999999999999999999999998 876 6889999999
Q ss_pred c---cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeC-ChhHHHHHHHHHcCCCCeEEecC
Q 012349 200 V---EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG-AEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 200 i---~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~-~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
+ .+. +...+++.+.+.+|.. .+.+++.||+++.+++.+.++.+++++ +++..+.++++|+..+++++..+
T Consensus 107 ~~~~~~~-----~~~~l~~~~~~~~g~~-~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~ 180 (335)
T 1txg_A 107 LIDFDNS-----VLTVPEAVWRLKHDLR-ERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT 180 (335)
T ss_dssp EEEETTE-----EEEHHHHHHTTSTTCG-GGEEEEESSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEES
T ss_pred CccCCCC-----cCccHHHHHHHhcCCC-CcEEEEECCCcHHHHHccCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEecC
Confidence 9 543 1233445454433321 246789999999998887766555544 56778999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcccCCC----cchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhcccCchh
Q 012349 276 DLVTHEVMGGLKNVYAIGAGMVAALTNES----ATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRN 350 (465)
Q Consensus 276 Di~gve~~galKNviAia~Gi~~gl~~g~----~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN 350 (465)
|+.+.+|+|+++|++++++|++.+++++. +|....++..+++|+..+++++|.+++++.++ +++|++.+|..+||
T Consensus 181 di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 260 (335)
T 1txg_A 181 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRGGRN 260 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTCHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcchhhcccchhheeeccccCcc
Confidence 99999999999999999999998887650 34456889999999999999999999988875 89999999977999
Q ss_pred HHHHHHHhcCCChhhHhHhhcC-C-cccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHH
Q 012349 351 AWYGQELAKGRLTLDLGDSIKG-K-GMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPI 428 (465)
Q Consensus 351 ~~~G~~l~~g~~~~~~~~~~~~-~-~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~ 428 (465)
+++|..++.|.+..+....+.+ + ...|+......++++++++|+ + +|+++++|++++++.+|.
T Consensus 261 ~~~~~~~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv--------------~-~P~~~~~~~~~~~~~~~~ 325 (335)
T 1txg_A 261 GMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINA--------------D-TKLLDSIYRVLYEGLKVE 325 (335)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHhCCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCC--------------C-CcHHHHHHHHHhCCCCHH
Confidence 9999999988765332221110 1 468999999999999999994 7 899999999999999999
Q ss_pred HHHHHHHh
Q 012349 429 QAILEALR 436 (465)
Q Consensus 429 ~~~~~ll~ 436 (465)
+++..||.
T Consensus 326 ~~~~~l~~ 333 (335)
T 1txg_A 326 EVLFELAT 333 (335)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99999885
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-31 Score=266.86 Aligned_cols=282 Identities=15% Similarity=0.143 Sum_probs=205.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|+||+++|..|+++ | ++|++| +++++++.++.+++ +.. .++.
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~-G-----~~V~l~-~~~~~~~~i~~~g~----------------~~~-~~~~---- 69 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARA-G-----HEVILI-ARPQHVQAIEATGL----------------RLE-TQSF---- 69 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHT-T-----CEEEEE-CCHHHHHHHHHHCE----------------EEE-CSSC----
T ss_pred cCCcEEEECcCHHHHHHHHHHHHC-C-----CeEEEE-EcHhHHHHHHhCCe----------------EEE-cCCC----
Confidence 568999999999999999999998 7 999999 88777665433221 111 1111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.++ .++.+++++++ +.++|+||+|||+++++++++++.+++++ +++||+++||++
T Consensus 70 ---~~~------------------~~~~~~~~~~~-~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~~~nGi~ 124 (318)
T 3hwr_A 70 ---DEQ------------------VKVSASSDPSA-VQGADLVLFCVKSTDTQSAALAMKPALAK---SALVLSLQNGVE 124 (318)
T ss_dssp ---EEE------------------ECCEEESCGGG-GTTCSEEEECCCGGGHHHHHHHHTTTSCT---TCEEEEECSSSS
T ss_pred ---cEE------------------EeeeeeCCHHH-cCCCCEEEEEcccccHHHHHHHHHHhcCC---CCEEEEeCCCCC
Confidence 111 14667788765 68999999999999999999999999887 789999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCC-----CccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 202 AELEAVPRIITPTQMINRATGVP-----IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~-----~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
.. +.+.+.++.+ ....++++||+++.+++.|.++ ++. .+.++.++++|++.+|++++++|
T Consensus 125 ~~-----------~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~---ig~-~~~~~~l~~~l~~~~~~~~~~~D 189 (318)
T 3hwr_A 125 NA-----------DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELV---IEP-TSHGANLAAIFAAAGVPVETSDN 189 (318)
T ss_dssp HH-----------HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEE---ECC-CTTTHHHHHHHHHTTCCEEECSC
T ss_pred cH-----------HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEE---EcC-CHHHHHHHHHHHhCCCCcEechH
Confidence 75 4566666411 1123678999999999887543 333 45678899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCC---cchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhc-c-cCchhH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNES---ATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVT-L-LKGRNA 351 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~---~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T-~-~~sRN~ 351 (465)
+.+.+|+|+++|+..++.+++.+..+|. +.....+++++++|+..++++.|.+.... +-|.+.. + ..+.|+
T Consensus 190 i~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~----~~~~~~~~~~~~~~~~ 265 (318)
T 3hwr_A 190 VRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVKLPDD----VALAIRRIAETMPRQS 265 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCCCCTT----HHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCCCChH----HHHHHHHHHHhcCCCC
Confidence 9999999999999999999998887652 11234799999999999999999864321 1111111 1 011121
Q ss_pred -HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 352 -WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 352 -~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
++-+++.+|+.+ .+|-+.. .++++++++|+ + +|+++++|+++..
T Consensus 266 sSM~qD~~~gr~t-----------Eid~i~G--~vv~~a~~~gv--------------~-tP~~~~l~~ll~~ 310 (318)
T 3hwr_A 266 SSTAQDLARGKRS-----------EIDHLNG--LIVRRGDALGI--------------P-VPANRVLHALVRL 310 (318)
T ss_dssp CHHHHHHHTTCCC-----------SGGGTHH--HHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred cHHHHHHHcCChh-----------HHHHHHH--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 233444444322 3444444 79999999995 6 8999999999974
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=268.11 Aligned_cols=285 Identities=18% Similarity=0.133 Sum_probs=208.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ | ++|++|+|++ .+.+ ++.+ ..+.+. .+
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~-g-----~~V~~~~r~~--~~~i---------~~~g----------~~~~~~---~g 51 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRS-G-----EDVHFLLRRD--YEAI---------AGNG----------LKVFSI---NG 51 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHT-S-----CCEEEECSTT--HHHH---------HHTC----------EEEEET---TC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEEcCc--HHHH---------HhCC----------CEEEcC---CC
Confidence 37999999999999999999998 7 8999999986 2432 2211 011110 01
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+..+ .++.++++.++ +.++|+||+|||+++++++++++++++.+ +++||+++||++.
T Consensus 52 ~~~~-------------------~~~~~~~~~~~-~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~l~nGi~~ 108 (312)
T 3hn2_A 52 DFTL-------------------PHVKGYRAPEE-IGPMDLVLVGLKTFANSRYEELIRPLVEE---GTQILTLQNGLGN 108 (312)
T ss_dssp CEEE-------------------SCCCEESCHHH-HCCCSEEEECCCGGGGGGHHHHHGGGCCT---TCEEEECCSSSSH
T ss_pred eEEE-------------------eeceeecCHHH-cCCCCEEEEecCCCCcHHHHHHHHhhcCC---CCEEEEecCCCCc
Confidence 1111 13556778765 68999999999999999999999999987 7899999999986
Q ss_pred cccccccCCCHHHHHHhHhCCCC------ccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCCCCeEEecC
Q 012349 203 ELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~------~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
. +.+++.++... ...+.+.||+++.+.+.+...+.... .+++.++.++++|++.+|+++.++
T Consensus 109 ~-----------~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~ 177 (312)
T 3hn2_A 109 E-----------EALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPRDTGRIEELAAMFRQAGVDCRTTD 177 (312)
T ss_dssp H-----------HHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCCCSHHHHHHHHHHHHTTCCEEECS
T ss_pred H-----------HHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCCccHHHHHHHHHHHhCCCCcEECh
Confidence 5 56777776321 01235678999988765543222221 245678999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcccCCC---cchHHHHHHHHHHHHHHHHHHhC--CCcchhccCchhhhhhccc--Cc
Q 012349 276 DLVTHEVMGGLKNVYAIGAGMVAALTNES---ATSKSVYFAHCTSEMVFITHLLA--EEPEKLAGPLLADTYVTLL--KG 348 (465)
Q Consensus 276 Di~gve~~galKNviAia~Gi~~gl~~g~---~n~~a~li~~~~~E~~~l~~a~G--~~~~t~~g~glgDl~~T~~--~s 348 (465)
|+.+++|.|+++|+..++.+++.+..+|. ++..+.++++++.|+.++++++| .+... .+.|.+.++. .+
T Consensus 178 di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~----~~~~~~~~~~~~~~ 253 (312)
T 3hn2_A 178 DLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLATFIAD----GYVDDMLEFTDAMG 253 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCSSCCCT----THHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCccCCCH----HHHHHHHHHHhcCC
Confidence 99999999999999988888888877652 34456899999999999999999 75431 3456555552 34
Q ss_pred hhH-HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 349 RNA-WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 349 RN~-~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
+|+ ++-+++.+|+ ..|.-.....++++++++|+ + +|+++++|++++.
T Consensus 254 ~~~sSM~qD~~~gr-------------~tEid~i~G~vv~~a~~~gv--------------~-~P~~~~l~~ll~~ 301 (312)
T 3hn2_A 254 EYKPSMEIDREEGR-------------PLEIAAIFRTPLAYGAREGI--------------A-MPRVEMLATLLEQ 301 (312)
T ss_dssp SCCCHHHHHHHTTC-------------CCCHHHHTHHHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred CCCchHHHHHHhCC-------------CccHHHHhhHHHHHHHHhCC--------------C-CCHHHHHHHHHHH
Confidence 454 3444444443 34444455589999999995 7 8999999999975
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=259.93 Aligned_cols=281 Identities=16% Similarity=0.193 Sum_probs=200.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ | ++|++|+|++ .+.++.+++ . .+..+.+
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~-g-----~~V~~~~r~~--~~~i~~~Gl-------~-------~~~~~~g------- 52 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKT-G-----HCVSVVSRSD--YETVKAKGI-------R-------IRSATLG------- 52 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHT-T-----CEEEEECSTT--HHHHHHHCE-------E-------EEETTTC-------
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEeCCh--HHHHHhCCc-------E-------EeecCCC-------
Confidence 38999999999999999999998 7 8999999986 243322111 0 0111111
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+..+ .++.++++++++.+++|+||+|||+++++++++++++++++ +++||+++||++.
T Consensus 53 ~~~~-------------------~~~~~~~~~~~~~~~~DlVilavK~~~~~~~l~~l~~~l~~---~t~Iv~~~nGi~~ 110 (320)
T 3i83_A 53 DYTF-------------------RPAAVVRSAAELETKPDCTLLCIKVVEGADRVGLLRDAVAP---DTGIVLISNGIDI 110 (320)
T ss_dssp CEEE-------------------CCSCEESCGGGCSSCCSEEEECCCCCTTCCHHHHHTTSCCT---TCEEEEECSSSSC
T ss_pred cEEE-------------------eeeeeECCHHHcCCCCCEEEEecCCCChHHHHHHHHhhcCC---CCEEEEeCCCCCh
Confidence 1111 13556788877656899999999999999999999999887 7899999999987
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchh-------hhhhccCceEEEEe----CChhHHHHHHHHHcCCCCeE
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIA-------SEIYNKEYANARIC----GAEKWRKPLAKFLRRPHFTV 271 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a-------~ev~~g~~t~~~~~----~~~~~~~~l~~ll~~~g~~v 271 (465)
. +.+++.++.. + +++||++. .++....+..+.++ .+++.++.++++|++.+|++
T Consensus 111 ~-----------~~l~~~~~~~--~--vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~~~~~~~~~~l~~~l~~~~~~~ 175 (320)
T 3i83_A 111 E-----------PEVAAAFPDN--E--VISGLAFIGVTRTAPGEIWHQAYGRLMLGNYPGGVSERVKTLAAAFEEAGIDG 175 (320)
T ss_dssp S-----------HHHHHHSTTS--C--EEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHHHTTSCE
T ss_pred H-----------HHHHHHCCCC--c--EEEEEEEeceEEcCCCEEEECCCCEEEEecCCCCccHHHHHHHHHHHhCCCCc
Confidence 6 5788888642 2 45666655 33333333334443 24567899999999999999
Q ss_pred EecCChHHHHHHHHHHHH----HHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhccc-
Q 012349 272 WDNGDLVTHEVMGGLKNV----YAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL- 346 (465)
Q Consensus 272 ~~s~Di~gve~~galKNv----iAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~- 346 (465)
+.++|+.+++|+|+++|+ +++++|+..|..+. +.. +.++++++.|+..+++++|.+... .+.|.+.++.
T Consensus 176 ~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~-~~~-~~l~~~~~~E~~~va~a~G~~l~~----~~~~~~~~~~~ 249 (320)
T 3i83_A 176 IATENITTARWQKCVWNAAFNPLSVLSGGLDTLDIL-STQ-EGFVRAIMQEIRAVAAANGHPLPE----DIVEKNVASTY 249 (320)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHH-HHC-HHHHHHHHHHHHHHHHHTTCCCCT----THHHHHHHHHH
T ss_pred eECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHh-CcH-HHHHHHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHh
Confidence 999999999999999976 55666665555443 223 689999999999999999997542 3445444441
Q ss_pred -CchhH-HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 347 -KGRNA-WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 347 -~sRN~-~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
.++|+ ++-+++.+|+ ..|.-.....++++++++|+ + +|+++++|+++..
T Consensus 250 ~~~~~~sSM~qD~~~gr-------------~tEid~i~G~vv~~a~~~gv--------------~-~P~~~~l~~~l~~ 300 (320)
T 3i83_A 250 KMPPYKTSMLVDFEAGQ-------------PMETEVILGNAVRAGRRTRV--------------A-IPHLESVYALMKL 300 (320)
T ss_dssp HSCCCCCHHHHHHHHTC-------------CCCHHHHTHHHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHhCC-------------CchHHHHccHHHHHHHHhCC--------------C-CCHHHHHHHHHHH
Confidence 23333 2333333333 34444455589999999995 7 8999999999974
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=254.51 Aligned_cols=295 Identities=14% Similarity=0.087 Sum_probs=205.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ | ++|++|+|+ +.++.++ +.+. +.. .++.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~-g-----~~V~~~~r~-~~~~~~~---------~~g~-------~~~-~~~~----- 53 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALA-G-----EAINVLARG-ATLQALQ---------TAGL-------RLT-EDGA----- 53 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHT-T-----CCEEEECCH-HHHHHHH---------HTCE-------EEE-ETTE-----
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEEECh-HHHHHHH---------HCCC-------EEe-cCCC-----
Confidence 48999999999999999999998 7 899999996 4444422 2110 100 0110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++ .++.+++++++ +.++|+||+|||+++++++++++.+++++ +++||+++||++.
T Consensus 54 --~~~------------------~~~~~~~~~~~-~~~~D~Vilavk~~~~~~~~~~l~~~l~~---~~~iv~~~nGi~~ 109 (335)
T 3ghy_A 54 --THT------------------LPVRATHDAAA-LGEQDVVIVAVKAPALESVAAGIAPLIGP---GTCVVVAMNGVPW 109 (335)
T ss_dssp --EEE------------------ECCEEESCHHH-HCCCSEEEECCCHHHHHHHHGGGSSSCCT---TCEEEECCSSSCT
T ss_pred --eEE------------------EeeeEECCHHH-cCCCCEEEEeCCchhHHHHHHHHHhhCCC---CCEEEEECCCCcc
Confidence 010 14667888876 68999999999999999999999999877 7899999999851
Q ss_pred ccc---ccccCCC-----HHHHHHhHhCCCCccE--------EEEeCCchhhhhhccCceEEEE-eCChhHHHHHHHHHc
Q 012349 203 ELE---AVPRIIT-----PTQMINRATGVPIENI--------LYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLR 265 (465)
Q Consensus 203 ~~~---~~~~~~~-----~se~I~e~lg~~~~~i--------~vlsGP~~a~ev~~g~~t~~~~-~~~~~~~~~l~~ll~ 265 (465)
... +..+.++ ..+.+.+.++. .++ +.+.||+++.+...+...+... +.+++.++.++++|+
T Consensus 110 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~~--~~v~~gv~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~ 187 (335)
T 3ghy_A 110 WFFDRPGPLQGQRLQAVDPHGRIAQAIPT--RHVLGCVVHLTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFG 187 (335)
T ss_dssp TTTCSSSTTTTCCCTTTCTTSHHHHHSCG--GGEEEEEECCCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHH
T ss_pred ccccccccccccccccCCcHHHHHHhcCc--ccEEEEEEEEEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHH
Confidence 100 0001111 23467777763 222 5688999998877664322211 123567899999999
Q ss_pred CCCCeEEecCChHHHHHHHH----HHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhh
Q 012349 266 RPHFTVWDNGDLVTHEVMGG----LKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADT 341 (465)
Q Consensus 266 ~~g~~v~~s~Di~gve~~ga----lKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl 341 (465)
+.+|+++.++|+.+..|.+. .+|++++++|+..|..++ ++..+++++++++|+.++++++|.++... + |.
T Consensus 188 ~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~-~~~~~~l~~~~~~E~~~va~a~G~~~~~~----~-~~ 261 (335)
T 3ghy_A 188 RAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILD-DPLVSAFCLAVMAEAKAIGARIGCPIEQS----G-EA 261 (335)
T ss_dssp HTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHH-SHHHHHHHHHHHHHHHHHHHTTTCCCCSC----H-HH
T ss_pred hCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhc-ChHHHHHHHHHHHHHHHHHHHcCCCCCcc----H-HH
Confidence 99999999999999988664 489999999999998775 34556899999999999999999976432 1 21
Q ss_pred hhcccCchhHHHHHHHhcCCChhhHhHhhcCCc-ccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHH
Q 012349 342 YVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKG-MIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKI 420 (465)
Q Consensus 342 ~~T~~~sRN~~~G~~l~~g~~~~~~~~~~~~~~-~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~i 420 (465)
..+ +....+..+++ +.+++..++ ..|.-.....++++++++|+ + +|+++++|++
T Consensus 262 ~~~--------~~~~~~~~~sS--M~qD~~~gr~~tEid~i~G~vv~~a~~~gv--------------~-~P~~~~l~~l 316 (335)
T 3ghy_A 262 RSA--------VTRQLGAFKTS--MLQDAEAGRGPLEIDALVASVREIGLHVGV--------------P-TPQIDTLLGL 316 (335)
T ss_dssp HHH--------HHHTTCSCCCT--TTC-----CCCCCHHHHTHHHHHHHHHHTC--------------C-CHHHHHHHHH
T ss_pred HHH--------HHhccCCCCcH--HHHHHHcCCCCchHHHHhhHHHHHHHHhCC--------------C-CCHHHHHHHH
Confidence 111 11112222221 222233334 45555566699999999995 7 8999999999
Q ss_pred Hhc
Q 012349 421 LIM 423 (465)
Q Consensus 421 l~~ 423 (465)
++.
T Consensus 317 i~~ 319 (335)
T 3ghy_A 317 VRL 319 (335)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=241.80 Aligned_cols=273 Identities=12% Similarity=0.093 Sum_probs=188.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ | ++|++|+|+++.++. ... + +.
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~----------~~~---------~-----g~----- 46 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQS-L-----PHTTLIGRHAKTITY----------YTV---------P-----HA----- 46 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHH-C-----TTCEEEESSCEEEEE----------ESS---------T-----TS-----
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEEeccCcEEE----------Eec---------C-----Ce-----
Confidence 47999999999999999999999 7 899999999754321 000 0 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
. +..++.+..+++ .++|+||+|||+++++++++++++++++ +++||+++||++
T Consensus 47 ---~--------------------~~~~~~~~~~~~~~~~D~vilavk~~~~~~~l~~l~~~l~~---~~~iv~~~nGi~ 100 (294)
T 3g17_A 47 ---P--------------------AQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVIPHLTYLAHE---DTLIILAQNGYG 100 (294)
T ss_dssp ---C--------------------CEEEEEEEGGGCCSCEEEEEECSCGGGHHHHGGGHHHHEEE---EEEEEECCSSCC
T ss_pred ---e--------------------ccceecCchHhcCCCCCEEEEeCCccCHHHHHHHHHHhhCC---CCEEEEeccCcc
Confidence 0 112223334444 7899999999999999999999999887 689999999998
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
..+ . .+. .+.++......+.+.||+++. .. +..+.+ .+.+.++.++++|++.+|+++.++|+.+++
T Consensus 101 ~~~-----~-~~~---~~v~~g~~~~~a~~~~pg~v~-~~---~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~di~~~~ 166 (294)
T 3g17_A 101 QLE-----H-IPF---KNVCQAVVYISGQKKGDVVTH-FR---DYQLRI-QDNALTRQFRDLVQDSQIDIVLEANIQQAI 166 (294)
T ss_dssp CGG-----G-CCC---SCEEECEEEEEEEEETTEEEE-EE---EEEEEE-ECSHHHHHHHHHTTTSSCEEEEESSHHHHH
T ss_pred cHh-----h-CCC---CcEEEEEEEEEEEEcCCCEEE-EC---CCEEec-CccHHHHHHHHHHHhCCCceEEChHHHHHH
Confidence 862 0 000 011110011235788999983 22 222233 345678999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHhhhcccCC---CcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcc--cCchhH-HHH
Q 012349 282 VMGGLKNV-YAIGAGMVAALTNE---SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTL--LKGRNA-WYG 354 (465)
Q Consensus 282 ~~galKNv-iAia~Gi~~gl~~g---~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~--~~sRN~-~~G 354 (465)
|+|+++|+ ++ .+++ .+..+| .++....+++++++|+.+++++.|.+...- .+.+.+..+ ..+.|+ ++-
T Consensus 167 w~Kl~~N~~in-l~al-~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~---~~~~~~~~~~~~~~~~~sSM~ 241 (294)
T 3g17_A 167 WYKLLVNLGIN-SITA-LGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQ---TVDTIMTIYQGYPDEMGTSMY 241 (294)
T ss_dssp HHHHHHHHHHH-HHHH-HHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHH---HHHHHHHHHHTSCTTCCCHHH
T ss_pred HHHHHHHHHHH-HHHH-HCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhhcCCCCCCcHH
Confidence 99999999 44 4443 333332 134556899999999999999999875321 122322221 123333 455
Q ss_pred HHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 355 QELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 355 ~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
+++.+|+.+ .+|.+.. .++++++++|+ + +|+++++|+++..
T Consensus 242 qD~~~gr~t-----------Eid~i~G--~vv~~a~~~gv--------------~-~P~~~~l~~ll~~ 282 (294)
T 3g17_A 242 YDIVHQQPL-----------EVEAIQG--FIYRRAREHNL--------------D-TPYLDTIYSFLRA 282 (294)
T ss_dssp HHHHTTCCC-----------SGGGTHH--HHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred HHHHcCCCc-----------cHHHhhh--HHHHHHHHhCC--------------C-CChHHHHHHHHHH
Confidence 555555432 3555444 79999999995 6 8999999999974
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-27 Score=232.37 Aligned_cols=288 Identities=15% Similarity=0.116 Sum_probs=207.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||+|||+|+||+++|..|+++ | ++|++|+|++++++.++.+++ +..+.++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~r~~~~~~~~~~~g~----------------~~~~~~~------ 54 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG-G-----NDVTLIDQWPAHIEAIRKNGL----------------IADFNGE------ 54 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHCE----------------EEEETTE------
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHHHHhCCE----------------EEEeCCC------
Confidence 58999999999999999999998 7 899999999876665322110 0001100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecC--HHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTN--LQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~d--l~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.++ .++.++++ ..+++.++|+||+|||++.++++++++.+++++ +++|++++||+
T Consensus 55 --~~~------------------~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~---~~~iv~~~~g~ 111 (316)
T 2ew2_A 55 --EVV------------------ANLPIFSPEEIDHQNEQVDLIIALTKAQQLDAMFKAIQPMITE---KTYVLCLLNGL 111 (316)
T ss_dssp --EEE------------------ECCCEECGGGCCTTSCCCSEEEECSCHHHHHHHHHHHGGGCCT---TCEEEECCSSS
T ss_pred --eeE------------------ecceeecchhhcccCCCCCEEEEEeccccHHHHHHHHHHhcCC---CCEEEEecCCC
Confidence 000 02333332 112234899999999999999999999998876 68999999998
Q ss_pred cccccccccCCCHHHHHHhHhCCCC------ccEEEEeCCchhhhhhccCceEEEE-eCChhHHHHHHHHHcCCCCeEEe
Q 012349 201 EAELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARI-CGAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~------~~i~vlsGP~~a~ev~~g~~t~~~~-~~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
... +.+.+.++... ...+.++||+++.+...|.+..... +.+++..+.++++|+..|++++.
T Consensus 112 ~~~-----------~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~ 180 (316)
T 2ew2_A 112 GHE-----------DVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPSGKKFALEVVDVFQKAGLNPSY 180 (316)
T ss_dssp CTH-----------HHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred CcH-----------HHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCCCccHHHHHHHHHHHhCCCCcEE
Confidence 753 34555554210 0012478999988877776554332 33567789999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHhhhcccCCC--cchHH-HHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhccc--C-
Q 012349 274 NGDLVTHEVMGGLKNVYAIGAGMVAALTNES--ATSKS-VYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL--K- 347 (465)
Q Consensus 274 s~Di~gve~~galKNviAia~Gi~~gl~~g~--~n~~a-~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~--~- 347 (465)
.+|+.+.+|.|+++|++..+.+.+.|...+. .+..+ .++..++.|+..+++++|.++... .+.|++.+|. .
T Consensus 181 ~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G~~~~~~---~~~~~~~~~~~~~~ 257 (316)
T 2ew2_A 181 SSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIYLDQA---EVYTHIVQTYDPNG 257 (316)
T ss_dssp CTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTTCCCCHH---HHHHHHHHTTCTTT
T ss_pred chhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcCCCCChH---HHHHHHHHHhcccc
Confidence 9999999999999999888877777764220 12222 788999999999999999976321 4678887764 3
Q ss_pred -chhHH-HHHHH-hcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 348 -GRNAW-YGQEL-AKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 348 -sRN~~-~G~~l-~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
+||+. +.+++ .+|+. .|.......++++++++|+ + +|+++++|++++.
T Consensus 258 ~~~~~~sm~~d~~~~g~~-------------~E~~~~~~~~~~~a~~~gv--------------~-~P~~~~~~~~~~~ 308 (316)
T 2ew2_A 258 IGLHYPSMYQDLIKNHRL-------------TEIDYINGAVWRKGQKYNV--------------A-TPFCAMLTQLVHG 308 (316)
T ss_dssp TTTSCCHHHHHHTTTCCC-------------CSGGGTHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHcCCc-------------chHHHHhhHHHHHHHHhCC--------------C-CCHHHHHHHHHHH
Confidence 67764 66666 55543 3455566789999999995 6 8999999999974
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-26 Score=225.82 Aligned_cols=291 Identities=13% Similarity=0.077 Sum_probs=195.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCC-eeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDK-VLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~-~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
++|||+|||+|+||+++|..|+++ +....+ ++|++|+| +++++.++.+ .+. ......+.
T Consensus 7 ~~m~I~iiG~G~mG~~~a~~L~~~-~~~~~g~~~V~~~~r-~~~~~~l~~~--------~g~-------~~~~~~~~--- 66 (317)
T 2qyt_A 7 QPIKIAVFGLGGVGGYYGAMLALR-AAATDGLLEVSWIAR-GAHLEAIRAA--------GGL-------RVVTPSRD--- 66 (317)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHH-HHHTTSSEEEEEECC-HHHHHHHHHH--------TSE-------EEECSSCE---
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-ccccCCCCCEEEEEc-HHHHHHHHhc--------CCe-------EEEeCCCC---
Confidence 348999999999999999999876 100102 78999999 6555543220 110 00000000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.. . .++.++++.+ ++.++|+||+|||++.++++++++.+++++ +++||+++||+
T Consensus 67 ----~~------------~------~~~~~~~~~~-~~~~~D~vil~vk~~~~~~v~~~i~~~l~~---~~~iv~~~nG~ 120 (317)
T 2qyt_A 67 ----FL------------A------RPTCVTDNPA-EVGTVDYILFCTKDYDMERGVAEIRPMIGQ---NTKILPLLNGA 120 (317)
T ss_dssp ----EE------------E------CCSEEESCHH-HHCCEEEEEECCSSSCHHHHHHHHGGGEEE---EEEEEECSCSS
T ss_pred ----eE------------E------ecceEecCcc-ccCCCCEEEEecCcccHHHHHHHHHhhcCC---CCEEEEccCCC
Confidence 00 0 1345667764 478999999999999999999999998876 67899999998
Q ss_pred cccccccccCCCHHHHHHhHhCCCC------ccEEEEeCCchhhhhhccCceEEEEeC-----ChhHHHHHHHHHcCCCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICG-----AEKWRKPLAKFLRRPHF 269 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~------~~i~vlsGP~~a~ev~~g~~t~~~~~~-----~~~~~~~l~~ll~~~g~ 269 (465)
... +.+.+.++... ...+.++||+++.+...+.. .+++. +.+.. .++++|+..++
T Consensus 121 ~~~-----------~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~--~~ig~~~~~~~~~~~-~~~~ll~~~g~ 186 (317)
T 2qyt_A 121 DIA-----------ERMRTYLPDTVVWKGCVYISARKSAPGLITLEADREL--FYFGSGLPEQTDDEV-RLAELLTAAGI 186 (317)
T ss_dssp SHH-----------HHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEE--EEEECCSSSCCHHHH-HHHHHHHHTTC
T ss_pred CcH-----------HHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCce--EEEcCCCCCCcCHHH-HHHHHHHHCCC
Confidence 764 45666665321 11246678888766555532 22322 24556 89999999999
Q ss_pred eEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcc-hHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhccc--
Q 012349 270 TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESAT-SKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL-- 346 (465)
Q Consensus 270 ~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n-~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~-- 346 (465)
++++.+|+.+.+|.|+++|++..+.+++.|.++|..- ....++.+++.|+..+++++|.++++. .+.|++.+|.
T Consensus 187 ~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v~~a~G~~~~~~---~~~~~~~~~~~~ 263 (317)
T 2qyt_A 187 RAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAELFRAKYGQVPDD---VVQQLLDKQRKM 263 (317)
T ss_dssp CEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCSS---HHHHHHHHHHHC
T ss_pred CCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChH---HHHHHHHHHhcc
Confidence 9999999999999999999999998888888764210 123688899999999999999987543 4677777753
Q ss_pred CchhHH-HHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 347 KGRNAW-YGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 347 ~sRN~~-~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
.++|+. +.+++.+|+.. |.......++++++++|+ + +|+++.+|++++.
T Consensus 264 ~~~~~~sm~~d~~~g~~~-------------E~~~~~g~~~~~a~~~gv--------------~-~P~~~~~~~~~~~ 313 (317)
T 2qyt_A 264 PPESTSSMHSDFLQGGST-------------EVETLTGYVVREAEALRV--------------D-LPMYKRMYRELVS 313 (317)
T ss_dssp ---------------------------------CTTTHHHHHHHHHTTC--------------C-CHHHHHHHHTTCC
T ss_pred CCCCCChHHHHHHcCCcc-------------CHHHHhhHHHHHHHHcCC--------------C-CCHHHHHHHHHHH
Confidence 566654 54555544432 222335589999999995 7 8999999999874
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-25 Score=219.67 Aligned_cols=282 Identities=15% Similarity=0.071 Sum_probs=189.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+ + | ++|++|+|++++++.++.+++ +.. .++.
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~-g-----~~V~~~~r~~~~~~~l~~~G~----------------~~~-~~~~----- 52 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-L-Y-----HDVTVVTRRQEQAAAIQSEGI----------------RLY-KGGE----- 52 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-T-T-----SEEEEECSCHHHHHHHHHHCE----------------EEE-ETTE-----
T ss_pred CCEEEEECCCHHHHHHHHHHh-c-C-----CceEEEECCHHHHHHHHhCCc----------------eEe-cCCC-----
Confidence 489999999999999999999 8 7 899999999876665332221 000 0100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
..+ ..+..+. ++..++|+||+|||+++++++++.++++ .+ ++ ||+++||++.
T Consensus 53 --~~~------------------~~~~~~~---~~~~~~D~vilavK~~~~~~~l~~l~~~-~~---~~-ivs~~nGi~~ 104 (307)
T 3ego_A 53 --EFR------------------ADCSADT---SINSDFDLLVVTVKQHQLQSVFSSLERI-GK---TN-ILFLQNGMGH 104 (307)
T ss_dssp --EEE------------------ECCEEES---SCCSCCSEEEECCCGGGHHHHHHHTTSS-CC---CE-EEECCSSSHH
T ss_pred --eec------------------ccccccc---cccCCCCEEEEEeCHHHHHHHHHHhhcC-CC---Ce-EEEecCCccH
Confidence 000 0122222 2457899999999999999999999875 43 56 9999999987
Q ss_pred cccccccCCCHHHHHHhHhCCCC------ccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 203 ELEAVPRIITPTQMINRATGVPI------ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~------~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
. +.+++.+|... ...+.+.+|++..+.+.|...+....+..+..+.+.+.|+..++++++++|
T Consensus 105 ~-----------e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~l~~~l~~ag~~~~~~~d 173 (307)
T 3ego_A 105 I-----------HDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDDAEPDRLNILFQHNHSDFPIYYETD 173 (307)
T ss_dssp H-----------HHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTTCCGGGGTTTTSSCCTTSCEEECSC
T ss_pred H-----------HHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCCCcHHHHHHHHHhhhCCCCcEechh
Confidence 5 56777766421 112567789988877766544333333345667788899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCC---cchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcccCchhHHH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNES---ATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWY 353 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~---~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~ 353 (465)
+.+..|.|++.|+...+.+.+.+..+|. +.....+++..+.|+..++++.+ ++.+ +..+ ..+
T Consensus 174 i~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~~--~~~~----~~~~---------~~~ 238 (307)
T 3ego_A 174 WYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLEN--EEKA----WERV---------QAV 238 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCSC--HHHH----HHHH---------HHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhccC--hHHH----HHHH---------HHH
Confidence 9999999999999877777777777652 11223789999999999986431 2111 1011 111
Q ss_pred HHHHhcCCChhhHhHhhcCCc-ccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCC
Q 012349 354 GQELAKGRLTLDLGDSIKGKG-MIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRE 425 (465)
Q Consensus 354 G~~l~~g~~~~~~~~~~~~~~-~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~ 425 (465)
....+..++ +...+..+++. .+|-+.. .++++++++|+ + +|+++++|+++..-+
T Consensus 239 ~~~~~~~~s-SM~qD~~~gr~tEid~i~G--~vv~~a~~~gv--------------~-tP~~~~l~~li~~~e 293 (307)
T 3ego_A 239 CGQTKENRS-SMLVDVIGGRQTEADAIIG--YLLKEASLQGL--------------D-AVHLEFLYGSIKALE 293 (307)
T ss_dssp HHHTTTCCC-HHHHHHHHTCCCSHHHHHH--HHHHHHHHTTC--------------C-CHHHHHHHHHHHHTC
T ss_pred HHhcCCCCc-hHHHHHHcCCcccHHHhhh--HHHHHHHHcCC--------------C-CcHHHHHHHHHHHHH
Confidence 111122222 11111112222 3455444 89999999995 6 899999999997543
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=212.00 Aligned_cols=280 Identities=11% Similarity=0.093 Sum_probs=194.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.++ ..+ ..+ .
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~r~~~~~~~l~---------~~~------------~~~------~ 47 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ-G-----HEVQGWLRVPQPYCSVN---------LVE------------TDG------S 47 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSEEEEE---------EEC------------TTS------C
T ss_pred CeEEEECcCHHHHHHHHHHHhC-C-----CCEEEEEcCccceeeEE---------EEc------------CCC------c
Confidence 6999999999999999999998 7 89999999986544311 100 000 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
.++ ..+. .++. +++.++|+||+|||++.++++++++.+++++ +++|++++||+...
T Consensus 48 -~~~------------------~~~~-~~~~-~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~---~~~vv~~~~g~~~~ 103 (291)
T 1ks9_A 48 -IFN------------------ESLT-ANDP-DFLATSDLLLVTLKAWQVSDAVKSLASTLPV---TTPILLIHNGMGTI 103 (291)
T ss_dssp -EEE------------------EEEE-ESCH-HHHHTCSEEEECSCGGGHHHHHHHHHTTSCT---TSCEEEECSSSCTT
T ss_pred -eee------------------eeee-ecCc-cccCCCCEEEEEecHHhHHHHHHHHHhhCCC---CCEEEEecCCCCcH
Confidence 000 0122 2444 5678999999999999999999999998876 68899999999653
Q ss_pred ccccccCCCHHHHHHhHhCC--C--CccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 204 LEAVPRIITPTQMINRATGV--P--IENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~--~--~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
+.+.+.++. . ....+.+.|| .+.+...|.......+.+++..+.++++|+..++++++.+|+.+
T Consensus 104 -----------~~l~~~~~~~~~g~~~~~~~~~~p-~~~~~~~g~~~i~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~ 171 (291)
T 1ks9_A 104 -----------EELQNIQQPLLMGTTTHAARRDGN-VIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRA 171 (291)
T ss_dssp -----------GGGTTCCSCEEEEEECCEEEEETT-EEEEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCEEECTTHHH
T ss_pred -----------HHHHHhcCCeEEEEEeEccEEcCC-EEEEecccceEEccCCCCcchHHHHHHHHHhcCCCCeecHHHHH
Confidence 223343331 0 0113468899 67677777533222233455678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcc--hhccCchhhhhhcccCchhHHHHHHH
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPE--KLAGPLLADTYVTLLKGRNAWYGQEL 357 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~--t~~g~glgDl~~T~~~sRN~~~G~~l 357 (465)
..|.+.+.|..-.+...+.+..+|.-.....++..++.|+..+++++|.++. .+. ..+.|++.+|...+.+.+ +++
T Consensus 172 ~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~-~~~~~~~~~~~~~~ssm~-~d~ 249 (291)
T 1ks9_A 172 ELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLR-DYVMQVIDATAENISSML-QDI 249 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHH-HHHHHHHHHTTTCCCHHH-HHH
T ss_pred HHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCCCCChHH-HHH
Confidence 9999998887665555555544331111236889999999999999999752 221 146777776642233333 667
Q ss_pred hcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 358 AKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 358 ~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
.+|+.. |+ ..+.| .++++++++|+ + +|+++++|+++.
T Consensus 250 ~~g~~~-e~-------~~~~g-----~~~~~a~~~gv--------------~-~P~~~~~~~~~~ 286 (291)
T 1ks9_A 250 RALRHT-EI-------DYING-----FLLRRARAHGI--------------A-VPENTRLFEMVK 286 (291)
T ss_dssp HTTCCC-SG-------GGTHH-----HHHHHHHHHTC--------------C-CHHHHHHHHHHH
T ss_pred HcCCcc-HH-------HHHHH-----HHHHHHHHhCC--------------C-CCHHHHHHHHHH
Confidence 777654 21 13455 59999999995 7 899999999986
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-25 Score=227.07 Aligned_cols=297 Identities=11% Similarity=0.137 Sum_probs=191.5
Q ss_pred CceEEEECccHHHHHHHHHHHH-hcCCCCCCeeEEEEe---cCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQD-SYGYLRDKVLIRIWR---RPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~-~~G~~~~~~~V~l~~---r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
+|||+|||+|+||+++|..|++ + | ++|++|+ |+++.++. .+++.+. .-+..+.++..
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~-G-----~~V~~~~~~~r~~~~~~~--------~~~~~g~-----~~~~~~~~~~~ 62 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRD-G-----VEVRVLTLFADEAERWTK--------ALGADEL-----TVIVNEKDGTQ 62 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTST-T-----EEEEEECCSTTHHHHHHH--------HHTTSCE-----EEEEECSSSCE
T ss_pred CceEEEECCCHHHHHHHHHHHhCC-C-----CEEEEEeCCCCcHHHHHH--------HHhhccc-----eeeeecCCCcc
Confidence 4899999999999999999987 6 6 9999999 66554443 1222110 00000111100
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeE-EecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEe-
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLK-VVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL- 196 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~-~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~- 196 (465)
..++ ..+. +++|+++++.++|+||+|||++.++++++++.+++++ +++|+++
T Consensus 63 -----~~~~------------------~~~~~~~~~~~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~---~~ivv~~~ 116 (404)
T 3c7a_A 63 -----TEVK------------------SRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQD---SALIVGLP 116 (404)
T ss_dssp -----EEEE------------------ECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCT---TCEEEETT
T ss_pred -----ceee------------------ccceEEeCCHHHHhCCCCEEEEeCchHHHHHHHHHHHhhCCC---CcEEEEcC
Confidence 0000 0233 6788988889999999999999999999999999876 6888884
Q ss_pred -eccccccccccccCCCHHHHHHhH-----h-CCCCcc-EEEEeCCchhhhhhccCc--eEEEE-e--C-ChhHHHHHHH
Q 012349 197 -AKGVEAELEAVPRIITPTQMINRA-----T-GVPIEN-ILYLGGPNIASEIYNKEY--ANARI-C--G-AEKWRKPLAK 262 (465)
Q Consensus 197 -~kGi~~~~~~~~~~~~~se~I~e~-----l-g~~~~~-i~vlsGP~~a~ev~~g~~--t~~~~-~--~-~~~~~~~l~~ 262 (465)
++|++... .+.+.+. + +....+ .+.+.||+++.++..+.. ..... + . .+..++.+++
T Consensus 117 ~~~G~~~~~---------~~~l~~~~~~~v~~~~~~~~~~~~~~gpg~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 187 (404)
T 3c7a_A 117 SQAGFEFQC---------RDILGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQML 187 (404)
T ss_dssp CCTTHHHHH---------HHHHGGGGGTSEEEEESSCSEEEEEEETTTEEEEEEECSEEEEEEECCSSCCSCHHHHHHHH
T ss_pred CCccHHHHH---------HHHHHhcCCCeEEEEecCchHhhcccCCCcEEEEEEECceEEEEEccCCcchHHHHHHHHHH
Confidence 56644320 1233322 1 100122 367799998776654431 11222 2 1 2234455555
Q ss_pred HHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcc------c------CCC--cchHHHHHHHHHHHHHHHHHHh--
Q 012349 263 FLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAAL------T------NES--ATSKSVYFAHCTSEMVFITHLL-- 326 (465)
Q Consensus 263 ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl------~------~g~--~n~~a~li~~~~~E~~~l~~a~-- 326 (465)
++.+++ +..++|+++++|++ |+++++.+++.+. . +++ ....+.+++++++|+.++++++
T Consensus 188 ~~~~~~--~~~~~di~~~~l~~---N~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~E~~~va~a~~~ 262 (404)
T 3c7a_A 188 HGAEPV--FRLAKHFLEMLIMS---YSFVHPAILFGRWGSWDGKPVPEAPLFYQGIDQATADMLTACSNECKDVANAIMA 262 (404)
T ss_dssp HCSSSE--EEECSCHHHHHHTT---CTTHHHHHHHHHHTTCCSCCBSSCCBSGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCc--eeEcCCEeeeeecC---CceeccHHHHHHHHhhhcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 554332 55799999999985 7777766666322 1 222 1245689999999999999999
Q ss_pred ---CCCcchhccCchhhhhhcccCchhHHHHHHHhcCCChhhHhHh---------------------hcCCcccchHH-H
Q 012349 327 ---AEEPEKLAGPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDS---------------------IKGKGMIQGIS-A 381 (465)
Q Consensus 327 ---G~~~~t~~g~glgDl~~T~~~sRN~~~G~~l~~g~~~~~~~~~---------------------~~~~~~vEG~~-t 381 (465)
|.++.++ .+++|++.+|+.. .++++.+..++.+. ++.+...||+. +
T Consensus 263 ~~~G~~~~~~--~~~~d~~~~~~~~-------~~~~~~s~~~~~~~~~~~~d~~~P~~~te~~~~~d~~~r~~~Edv~~~ 333 (404)
T 3c7a_A 263 ACPGNDLSDV--KDIYQWYLEYYHE-------DIQDDHDLYHAITTNKSYKGLVHPVKAVDGGVAPDFGNRYLTEDIPMG 333 (404)
T ss_dssp HSTTCCCTTC--CCHHHHHHHHSTT-------TBSCCSSHHHHHHTBGGGTTCBCCEEEETTEEEECCCSSTTTTTTTTT
T ss_pred hcCCCCcccC--CCHHHHHHHhCCC-------ccCChhhHHHHHHhhhhhccCCCCCCCcCCCccCCccccccccccccc
Confidence 9987665 3588999888422 12222222221111 12344789886 8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 382 VKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 382 ~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
+..++++++++|+ + +|++++||++++
T Consensus 334 ~~~v~~la~~~gV--------------~-tP~~~~l~~l~~ 359 (404)
T 3c7a_A 334 MIVFKGVAIAAGV--------------A-IPSNDKLIMWAQ 359 (404)
T ss_dssp HHHHHHHHHHHTC--------------C-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCC--------------C-CchHHHHHHHHH
Confidence 8999999999995 7 899999999986
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=213.50 Aligned_cols=278 Identities=13% Similarity=0.074 Sum_probs=195.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+.|||+|||+|+||+.+|..|+++ | ++|++|++++++++.++ +++ ++.|.+++.
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~-G-----~~V~~~d~~~~~v~~l~---------~~~--------~~i~e~gl~--- 60 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI-G-----HDVFCLDVDQAKIDILN---------NGG--------VPIHEPGLK--- 60 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHH---------TTC--------CSSCCTTHH---
T ss_pred CCceEEEECcCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHHH---------CCC--------CCcCCCCHH---
Confidence 458999999999999999999999 8 99999999998777633 321 344555431
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------chHHHHHHHHHHhhhccCCCC
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------TETKEVFEEISRYWKERITVP 191 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------~~l~~vl~~l~~~l~~~~~~~ 191 (465)
|++.+... ..++.+++|+++++.+||+||+|||+ +++++++++|.+++++ ++
T Consensus 61 --------~~l~~~~~-------~~~l~~ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~---~~ 122 (478)
T 2y0c_A 61 --------EVIARNRS-------AGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTG---FK 122 (478)
T ss_dssp --------HHHHHHHH-------TTCEEEECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS---CE
T ss_pred --------HHHHHhcc-------cCCEEEECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCC---CC
Confidence 11111000 01578999998889999999999998 8999999999999886 67
Q ss_pred EEEEeeccccccccccccCCCHHHHHHhHhCCCC--ccEEEEeCCchhhhhhc----cCceEEEEeCC-h----hHHHHH
Q 012349 192 VIISLAKGVEAELEAVPRIITPTQMINRATGVPI--ENILYLGGPNIASEIYN----KEYANARICGA-E----KWRKPL 260 (465)
Q Consensus 192 ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~--~~i~vlsGP~~a~ev~~----g~~t~~~~~~~-~----~~~~~l 260 (465)
+||..+ |+++. +...+++.+.+.++... ..+.+.++|.++.+... +.+..++++.+ + +..+.+
T Consensus 123 iVV~~S-Tv~~g-----t~~~l~~~l~~~~~~g~~~~~~~v~~~Pe~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~ 196 (478)
T 2y0c_A 123 VIVDKS-TVPVG-----TAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELM 196 (478)
T ss_dssp EEEECS-CCCTT-----HHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHH
T ss_pred EEEEeC-CcCCC-----chHHHHHHHHHHhcCCCCCccEEEEEChhhhcccceeeccCCCCEEEEEECCCcccHHHHHHH
Confidence 776665 87665 23345566665432111 24678999999988664 44555566554 4 567889
Q ss_pred HHHHcCCCC---eEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCc
Q 012349 261 AKFLRRPHF---TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPL 337 (465)
Q Consensus 261 ~~ll~~~g~---~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~g 337 (465)
+++|+. .+ .++...|+.+.||.|.+-|. . .++...+++|+..+++++|++++++.. +
T Consensus 197 ~~l~~~-~~~~~~~~~~~di~~ae~~Kl~~N~-----------------~-~a~~ia~~nE~~~la~~~Gid~~~v~~-~ 256 (478)
T 2y0c_A 197 KKLYAP-FNRNHERTLYMDVRSAEFTKYAANA-----------------M-LATRISFMNELANLADRFGADIEAVRR-G 256 (478)
T ss_dssp HHHTGG-GGSSSCCEEEECHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHHTTCCHHHHHH-H
T ss_pred HHHHHH-HhccCCeEEcCCHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHHhCCCHHHHHH-H
Confidence 999985 55 38889999999999888875 1 245678899999999999999877643 2
Q ss_pred hhhhhhcc--cCchhHHHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHH
Q 012349 338 LADTYVTL--LKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILK 415 (465)
Q Consensus 338 lgDl~~T~--~~sRN~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~ 415 (465)
++ +- ...++++.|..++.+.. ....+.+.++++++|+ + +|+++
T Consensus 257 i~----~~~rig~~~~~pG~g~gg~c~----------------~kD~~~l~~~A~~~gv--------------~-~pl~~ 301 (478)
T 2y0c_A 257 IG----SDPRIGYHFLYAGCGYGGSCF----------------PKDVEALIRTADEHGQ--------------S-LQILK 301 (478)
T ss_dssp HH----TSTTTCSTTCCCSSCCCSSSH----------------HHHHHHHHHHHHHTTC--------------C-CHHHH
T ss_pred Hh----cCCccCcccCCCCcccccCcC----------------HHHHHHHHHHHHHcCC--------------C-cHHHH
Confidence 22 10 01123333322211111 1235678999999994 6 89999
Q ss_pred HHHHHHhcC
Q 012349 416 MLYKILIMR 424 (465)
Q Consensus 416 ~vy~il~~~ 424 (465)
+++++....
T Consensus 302 ~v~~in~~~ 310 (478)
T 2y0c_A 302 AVSSVNATQ 310 (478)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999854
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=197.87 Aligned_cols=222 Identities=16% Similarity=0.113 Sum_probs=169.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
.+|+|||+|+||+++|..|+++ | |+|++|++++++++.+ +++ +++.|+|++.
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~-G-----~~V~~~D~~~~kv~~l---------~~g--------~~~~~epgl~----- 60 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDF-G-----HEVVCVDKDARKIELL---------HQN--------VMPIYEPGLD----- 60 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHHHH---------TTT--------CCSSCCTTHH-----
T ss_pred eEEEEEcCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHH---------hcC--------CCCccCCCHH-----
Confidence 5899999999999999999999 8 9999999999887763 332 3677777653
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-----------hHHHHHHHHHHhhhccCCCCE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-----------~l~~vl~~l~~~l~~~~~~~i 192 (465)
|++.+... ..++.+|+|+++++++||+||+|||.. +++++++.+.+++++ +++
T Consensus 61 ------~~~~~~~~-------~g~l~~ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~---g~i 124 (446)
T 4a7p_A 61 ------ALVASNVK-------AGRLSFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTK---PSV 124 (446)
T ss_dssp ------HHHHHHHH-------TTCEEEESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCS---CCE
T ss_pred ------HHHHhhcc-------cCCEEEECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCC---CCE
Confidence 22211000 025789999999999999999998754 599999999999886 677
Q ss_pred EEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc----cCceEEEEeCC-hhHHHHHHHHHcCC
Q 012349 193 IISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGA-EKWRKPLAKFLRRP 267 (465)
Q Consensus 193 vIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~-~~~~~~l~~ll~~~ 267 (465)
||..+ ++++. +.+.+++.+.+..+. ..+.+++||+++.+... +.++.++++++ ++..+.++.+|+..
T Consensus 125 VV~~S-Tv~pg-----tt~~l~~~l~e~~~~--~d~~v~~~Pe~a~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~ 196 (446)
T 4a7p_A 125 IVTKS-TVPVG-----TGDEVERIIAEVAPN--SGAKVVSNPEFLREGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPL 196 (446)
T ss_dssp EEECS-CCCTT-----HHHHHHHHHHHHSTT--SCCEEEECCCCCCTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSC
T ss_pred EEEeC-CCCch-----HHHHHHHHHHHhCCC--CCceEEeCcccccccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHH
Confidence 77766 78776 345566777665432 35789999999998764 55666677664 67788999999864
Q ss_pred CCe---EEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 268 HFT---VWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 268 g~~---v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
.-. ++...|+.+.|++|...|. ..++...+++|+..+|+++|++++++.+
T Consensus 197 ~~~~~~~~~~~d~~~aE~~Kl~~N~------------------~~a~~ia~~nE~~~l~~~~GiD~~~v~~ 249 (446)
T 4a7p_A 197 SLNQSAPVLFTGRRTSELIKYAANA------------------FLAVKITFINEIADLCEQVGADVQEVSR 249 (446)
T ss_dssp C-----CEEEECHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hcCCCeEEEeCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 322 4788899999998766663 2345678899999999999999988754
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=194.43 Aligned_cols=224 Identities=14% Similarity=0.103 Sum_probs=165.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|++++++++.+ +++ .++.|.+++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~-G-----~~V~~~D~~~~~v~~l---------~~g--------~~~i~e~gl~----- 54 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL-G-----ANVRCIDTDRNKIEQL---------NSG--------TIPIYEPGLE----- 54 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHH---------HHT--------CSCCCSTTHH-----
T ss_pred CEEEEECcCHHHHHHHHHHHhc-C-----CEEEEEECCHHHHHHH---------HcC--------CCcccCCCHH-----
Confidence 7999999999999999999999 8 9999999999877653 222 2445555432
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCCCEE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~~iv 193 (465)
|++.+... ..++.+++|++++++++|+||+|||+. +++++++++.+++++ +++|
T Consensus 55 ------~~l~~~~~-------~~~l~~t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~---g~iV 118 (450)
T 3gg2_A 55 ------KMIARNVK-------AGRLRFGTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSR---YILI 118 (450)
T ss_dssp ------HHHHHHHH-------TTSEEEESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCS---CEEE
T ss_pred ------HHHHhhcc-------cCcEEEECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCC---CCEE
Confidence 11110000 025788999999999999999999987 899999999999876 6777
Q ss_pred EEeeccccccccccccCCCHHHHHHhHhCCC--CccEEEEeCCchhhhhhc----cCceEEEEeC-ChhHHHHHHHHHcC
Q 012349 194 ISLAKGVEAELEAVPRIITPTQMINRATGVP--IENILYLGGPNIASEIYN----KEYANARICG-AEKWRKPLAKFLRR 266 (465)
Q Consensus 194 Is~~kGi~~~~~~~~~~~~~se~I~e~lg~~--~~~i~vlsGP~~a~ev~~----g~~t~~~~~~-~~~~~~~l~~ll~~ 266 (465)
|..+ ++.+. +.+.+++.+.+..+.. ...+.+.+||+++.+... ..++.+++++ +++..+.++.+|+.
T Consensus 119 V~~S-Tv~pg-----t~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~ 192 (450)
T 3gg2_A 119 VTKS-TVPVG-----SYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKP 192 (450)
T ss_dssp EECS-CCCTT-----HHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTT
T ss_pred EEee-eCCCc-----chHHHHHHHHHhccccCcCcceeEEechhhhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHH
Confidence 7666 57665 3344566666543211 134789999999998665 4555566664 56778999999985
Q ss_pred CCC--eEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhcc
Q 012349 267 PHF--TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAG 335 (465)
Q Consensus 267 ~g~--~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g 335 (465)
.+- ..+...|+.+.|+.|..-| +..++...+++|+..+|+++|++++++.+
T Consensus 193 ~~~~~~~~~~~d~~~aE~~Kl~~N------------------~~~a~~ia~~nE~~~l~~~~Gid~~~v~~ 245 (450)
T 3gg2_A 193 MLLNNFRVLFMDIASAEMTKYAAN------------------AMLATRISFMNDVANLCERVGADVSMVRL 245 (450)
T ss_dssp TCCSCCCEEEECHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HhcCCCeEEecCHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 432 1567889999999765555 33356778999999999999999988765
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=185.60 Aligned_cols=291 Identities=16% Similarity=0.097 Sum_probs=192.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|++++++++.++ +++ .+.+.+++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~-G-----~~V~~~d~~~~~~~~l~---------~~~--------~~i~e~~l~----- 52 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR-G-----HEVIGVDVSSTKIDLIN---------QGK--------SPIVEPGLE----- 52 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHH---------TTC--------CSSCCTTHH-----
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHh---------CCC--------CCcCCCCHH-----
Confidence 6999999999999999999998 8 89999999988776532 221 233333321
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch----------HHHHHHHHHHhhhccCCCCEE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------TKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~----------l~~vl~~l~~~l~~~~~~~iv 193 (465)
|++..+... ..+.+++|+++++.++|+||+|||... ++++++++.+++++...+++|
T Consensus 53 ------~~~~~~~~~-------g~l~~t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iV 119 (436)
T 1mv8_A 53 ------ALLQQGRQT-------GRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTV 119 (436)
T ss_dssp ------HHHHHHHHT-------TCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEE
T ss_pred ------HHHHhhccc-------CceEEeCCHHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEE
Confidence 111110000 147788999888999999999999765 999999999988640002566
Q ss_pred EEeeccccccccccccCCCHHHHHHhHhCCCC-ccEEEEeCCchhhhhhc----cCceEEEEeC-ChhHHHHHHHHHcCC
Q 012349 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPI-ENILYLGGPNIASEIYN----KEYANARICG-AEKWRKPLAKFLRRP 267 (465)
Q Consensus 194 Is~~kGi~~~~~~~~~~~~~se~I~e~lg~~~-~~i~vlsGP~~a~ev~~----g~~t~~~~~~-~~~~~~~l~~ll~~~ 267 (465)
|..+ ++.+.+ +...+.+.+.+..+... ..+.+.++|.++.+... ..+..++++. +++..+.++++|+..
T Consensus 120 V~~S-tv~~g~----t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~ 194 (436)
T 1mv8_A 120 VVRS-TVLPGT----VNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYREL 194 (436)
T ss_dssp EECS-CCCTTH----HHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTS
T ss_pred EEeC-CcCCCc----hHHHHHHHHHHhcCcccCCcEEEEECcccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhcc
Confidence 6543 444431 12345555655434221 23467889998876443 2233345554 466778899999998
Q ss_pred CCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcc--
Q 012349 268 HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTL-- 345 (465)
Q Consensus 268 g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~-- 345 (465)
+.+++. .|+...||.|.+-|.+ + ++....++|+..+++++|.+++++.. .+.+.
T Consensus 195 ~~~v~~-~~~~~ae~~Kl~~N~~-----------------~-a~~ia~~nE~~~l~~~~Gid~~~v~~-----~~~~~~r 250 (436)
T 1mv8_A 195 DAPIIR-KTVEVAEMIKYTCNVW-----------------H-AAKVTFANEIGNIAKAVGVDGREVMD-----VICQDHK 250 (436)
T ss_dssp SSCEEE-EEHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHTTSCHHHHHH-----HHTTCTT
T ss_pred CCCEEc-CCHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHhCCCHHHHHH-----HhcCCCC
Confidence 888777 8899999998877741 1 34457899999999999999876643 11111
Q ss_pred cC--chhHHHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 346 LK--GRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 346 ~~--sRN~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
.. +|+++.|..++.+-... ....+.++++++|+ + +|++++++++-
T Consensus 251 ~~~~~~~~~pg~g~gg~~~~k----------------D~~~l~~~a~~~g~--------------~-~pl~~~v~~in-- 297 (436)
T 1mv8_A 251 LNLSRYYMRPGFAFGGSCLPK----------------DVRALTYRASQLDV--------------E-HPMLGSLMRSN-- 297 (436)
T ss_dssp TTTSSTTCSCCSCCCSSSHHH----------------HHHHHHHHHHHTTC--------------C-CTTGGGHHHHH--
T ss_pred CCCcccCCCCcccccCcCcHh----------------hHHHHHHHHHHcCC--------------C-cHHHHHHHHHH--
Confidence 12 45554443222111111 14578899999994 6 89999999993
Q ss_pred CCCHHHHHHHHHhc
Q 012349 424 RESPIQAILEALRD 437 (465)
Q Consensus 424 ~~~~~~~~~~ll~~ 437 (465)
...|...+..++..
T Consensus 298 ~~~~~~~~~~~~~~ 311 (436)
T 1mv8_A 298 SNQVQKAFDLITSH 311 (436)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred hHhHHHHHHHHHHh
Confidence 34666666666654
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-18 Score=172.67 Aligned_cols=292 Identities=14% Similarity=0.116 Sum_probs=171.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ | ++|++|+|++++++.++. .+ ..++.+.. ++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~-g-----~~V~~~~r~~~~~~~~~~---------~~---------~~~~~~~~--~~ 57 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALK-G-----QSVLAWDIDAQRIKEIQD---------RG---------AIIAEGPG--LA 57 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH---------HT---------SEEEESSS--CC
T ss_pred cCeEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHHHh---------cC---------CeEEeccc--cc
Confidence 48999999999999999999998 7 899999999876654221 10 01121100 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
. ...+ .+++++++++.++|+||+|||++..+++++++.+++++ +++||++ +|+.
T Consensus 58 ~---------------------~~~~~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~l~~~l~~---~~~vv~~-~~~~ 112 (359)
T 1bg6_A 58 G---------------------TAHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISE---GQLIILN-PGAT 112 (359)
T ss_dssp E---------------------EECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TCEEEES-SCCS
T ss_pred c---------------------ccccceecCCHHHHHhcCCEEEEeCCchHHHHHHHHHHHhCCC---CCEEEEc-CCCc
Confidence 0 0023 36788888889999999999999999999999998876 6778877 5643
Q ss_pred ccccccccCCCHHHHHHhH-------hCCCCccEE-EEeCCchhhhhh-ccCceEEEEe-C-ChhHHHHHHHHHcCCCCe
Q 012349 202 AELEAVPRIITPTQMINRA-------TGVPIENIL-YLGGPNIASEIY-NKEYANARIC-G-AEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~-------lg~~~~~i~-vlsGP~~a~ev~-~g~~t~~~~~-~-~~~~~~~l~~ll~~~g~~ 270 (465)
... .. +.+.+.+. ++....+++ .+.||+++.... .+........ + +++..+.++++|.. +
T Consensus 113 ~~~-----~~-~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~--~- 183 (359)
T 1bg6_A 113 GGA-----LE-FRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACLPAAKAGWALEQIGSVLPQ--Y- 183 (359)
T ss_dssp SHH-----HH-HHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSCEEEEEESGGGHHHHHHHHTTTCTT--E-
T ss_pred hHH-----HH-HHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecceEEEeccccccHHHHHHHHHHhhh--c-
Confidence 221 11 22333331 100012333 357888766443 2332222222 2 33356778888853 3
Q ss_pred EEecCChHHHHHHHHHHHHHHH--------HHHhhh----cccCCC--cchHHHHHHHHHHHHHHHHHHhCCCcchhccC
Q 012349 271 VWDNGDLVTHEVMGGLKNVYAI--------GAGMVA----ALTNES--ATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP 336 (465)
Q Consensus 271 v~~s~Di~gve~~galKNviAi--------a~Gi~~----gl~~g~--~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~ 336 (465)
..++|+ |++++||+.++ .+|... .+.++. .+..+.++.+++.|+..+++++|.+++++...
T Consensus 184 -~~~~di----~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~ 258 (359)
T 1bg6_A 184 -VAVENV----LHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEW 258 (359)
T ss_dssp -EECSCH----HHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHH
T ss_pred -EEcCCh----HhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHH
Confidence 356786 78888886555 233321 111110 12245789999999999999999987655331
Q ss_pred chhhhhhcccCchhHHHHHHHhcCCChhhHhHhhcCCcccchHHH-------HHHHHHHHHHcCCCCCCCCCCCCCCccc
Q 012349 337 LLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISA-------VKAFYELLSQSSLSVLHPEENKPVATVE 409 (465)
Q Consensus 337 glgDl~~T~~~sRN~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t-------~~~v~~la~~~~~~~~~~~~~~~~~~v~ 409 (465)
+......+ ..|. ....+ .+ + +.+.+.....+++.+. ...+.++++++|+ +
T Consensus 259 -~~~~~~~~--~~~l---~~~~~-~~-s-m~~d~~~~~e~~~~~~~~D~~~~~g~~~~~a~~~gv--------------~ 315 (359)
T 1bg6_A 259 -YKESYGQS--PATI---YEAVQ-GN-P-AYRGIAGPINLNTRYFFEDVSTGLVPLSELGRAVNV--------------P 315 (359)
T ss_dssp -C---------CCSH---HHHHH-TC-G-GGTTCBCCSSSCCHHHHHHHHTTHHHHHHHHHHTTC--------------C
T ss_pred -HHHHhCCC--cccH---HHHHh-cc-h-hhcCCCCCCCCCccceecCcCccHHHHHHHHHHcCC--------------C
Confidence 10000000 1110 00000 01 0 1111111123555432 2479999999995 7
Q ss_pred CCcHHHHHHHHHhc
Q 012349 410 LCPILKMLYKILIM 423 (465)
Q Consensus 410 ~~Pi~~~vy~il~~ 423 (465)
+|+++++|+++..
T Consensus 316 -~P~~~~l~~~~~~ 328 (359)
T 1bg6_A 316 -TPLIDAVLDLISS 328 (359)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHH
Confidence 8999999999863
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-18 Score=169.32 Aligned_cols=259 Identities=12% Similarity=0.041 Sum_probs=174.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||+|||+|+||+++|..|+++ | ++|++|+|+++.++.+. +.
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~~---------~~---------------------- 43 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA-G-----FDVTVWNRNPAKCAPLV---------AL---------------------- 43 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH-T-----CCEEEECSSGGGGHHHH---------HH----------------------
T ss_pred CCeEEEEccCHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHH---------HC----------------------
Confidence 47999999999999999999999 8 89999999987655311 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH---HHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl---~~l~~~l~~~~~~~ivIs~~k 198 (465)
++..+++++++++++|+||++||+. .+++++ +.+.+.+.+ ++++|.++.
T Consensus 44 ------------------------g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~---g~~vv~~st 96 (287)
T 3pdu_A 44 ------------------------GARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGG---GRGYIDMST 96 (287)
T ss_dssp ------------------------TCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCT---TCEEEECSC
T ss_pred ------------------------CCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccC---CCEEEECCC
Confidence 2345678888899999999999985 888988 778877765 677887775
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhh--hhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~e--v~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+ .+.+ ...+.+.+.+ .| +.++.+|.+... ...+..+ ++++++++..+.++++|+..+.+++...|
T Consensus 97 ~-~~~~-----~~~~~~~~~~-~g-----~~~~~~pv~g~~~~a~~g~l~-~~~gg~~~~~~~~~~ll~~~g~~~~~~g~ 163 (287)
T 3pdu_A 97 V-DDET-----STAIGAAVTA-RG-----GRFLEAPVSGTKKPAEDGTLI-ILAAGDQSLFTDAGPAFAALGKKCLHLGE 163 (287)
T ss_dssp C-CHHH-----HHHHHHHHHH-TT-----CEEEECCEECCHHHHHHTCEE-EEEEECHHHHHHTHHHHHHHEEEEEECSS
T ss_pred C-CHHH-----HHHHHHHHHH-cC-----CEEEECCccCCHHHHhcCCEE-EEEeCCHHHHHHHHHHHHHhCCCEEEcCC
Confidence 4 3321 1122222322 12 123334433222 1234332 34566778889999999988888888777
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhcccCchhHHHHH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQ 355 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~ 355 (465)
.-..++.+.+-|. ....+..+++|+..++++.|.+++++... +.+. ..+...+|+ +.
T Consensus 164 ~g~~~~~Kl~~N~------------------~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~--~~s~~~~~~--~~ 221 (287)
T 3pdu_A 164 VGQGARMKLVVNM------------------IMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGA--MANPMFKGK--GQ 221 (287)
T ss_dssp TTHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST--TCCHHHHHH--HH
T ss_pred CChHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc--ccChHHHhh--cc
Confidence 6555666555553 22345678899999999999999887652 2211 111123343 45
Q ss_pred HHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 356 ELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 356 ~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
.+.++... .+...-.+....+.+.+++++.|+ + +|+++.+++++.
T Consensus 222 ~~~~~~~~-------~~~~~~~~~kd~~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 266 (287)
T 3pdu_A 222 MLLSGEFP-------TSFPLKHMQKDLRLAVELGDRLGQ--------------P-LHGAATANESFK 266 (287)
T ss_dssp HHHHTCCC-------CSSBHHHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHH
T ss_pred ccccCCCC-------CCCcHHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 55544211 111234777888999999999995 6 899999998875
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-18 Score=166.48 Aligned_cols=260 Identities=11% Similarity=0.037 Sum_probs=174.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||+++|..|+++ | ++|++|+|+++.++.+ .+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~---------~~------------------------ 42 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA-G-----CSVTIWNRSPEKAEEL---------AA------------------------ 42 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSGGGGHHH---------HH------------------------
T ss_pred CEEEEEeecHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHH---------HH------------------------
Confidence 7999999999999999999998 7 9999999998765431 10
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHH---HHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF---EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl---~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.++..++++++++.++|+||+||| ++.+++++ +++.+.+++ ++++|.++ +
T Consensus 43 ----------------------~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vi~~s-t 96 (287)
T 3pef_A 43 ----------------------LGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGE---GRGYVDMS-T 96 (287)
T ss_dssp ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECS-C
T ss_pred ----------------------CCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCC---CCEEEeCC-C
Confidence 024566788898999999999999 57899999 888888876 67777765 4
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
+.+.+ ...+.+.+.+ .|.......+..+|..+. .+... ++++++++..+.++.+|+..+.+++...+.-.
T Consensus 97 ~~~~~-----~~~~~~~~~~-~g~~~~~~pv~g~~~~a~---~g~l~-~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~ 166 (287)
T 3pef_A 97 VDPAT-----SQRIGVAVVA-KGGRFLEAPVSGSKKPAE---DGTLI-ILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGK 166 (287)
T ss_dssp CCHHH-----HHHHHHHHHH-TTCEEEECCEECCHHHHH---HTCEE-EEEEECHHHHHHHHHHHHHHEEEEEECSSTTH
T ss_pred CCHHH-----HHHHHHHHHH-hCCEEEECCCcCCHHHHh---cCCEE-EEEeCCHHHHHHHHHHHHHhCCCeEEeCCCCH
Confidence 44431 1222233322 221100112344454442 33322 34566778889999999988888888777655
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhcccCchhHHHHHHHh
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQELA 358 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~~l~ 358 (465)
.++.+.+-|.+ ...+..+++|+..++++.|.+++++... +.+. ..+...+|+ +..+.
T Consensus 167 ~~~~Kl~~N~~------------------~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~--~~s~~~~~~--~~~~~ 224 (287)
T 3pef_A 167 GAEMKLVVNMV------------------MGGMMACFCEGLALGEKAGLATDAILDVIGAGA--MANPMFALK--GGLIR 224 (287)
T ss_dssp HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST--TCCHHHHHH--HHHHH
T ss_pred HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc--cccHHHHHH--hhhhh
Confidence 66666555532 1234567899999999999999887652 2211 111123333 55555
Q ss_pred cCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 359 KGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
++... .+-..-.+....+.+.+++++.|+ + +|+++.+++++.
T Consensus 225 ~~~~~-------~~~~~~~~~kd~~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 266 (287)
T 3pef_A 225 DRNFA-------PAFPLKHMQKDLRLAVALGDRVGQ--------------P-LVASAAANELFK 266 (287)
T ss_dssp TTCCC-------CSSBHHHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHH
T ss_pred cCCCC-------CCCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 44211 011234667778899999999994 6 899999998875
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=164.17 Aligned_cols=258 Identities=14% Similarity=0.098 Sum_probs=169.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|.||++++..|++. | ++|.+|+|+++.++.+ .+.
T Consensus 5 ~m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~---------~~~---------------------- 47 (299)
T 1vpd_A 5 TMKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVSDRNPEAIADV---------IAA---------------------- 47 (299)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHH---------HHT----------------------
T ss_pred cceEEEECchHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHH---------HHC----------------------
Confidence 37999999999999999999988 7 8999999987654431 100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHH---HHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF---EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl---~~l~~~l~~~~~~~ivIs~~k 198 (465)
++..++++++++.++|+||+||| ++.++.++ +++.+.+++ +++||++++
T Consensus 48 ------------------------g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~---~~~vv~~s~ 100 (299)
T 1vpd_A 48 ------------------------GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVLIDMSS 100 (299)
T ss_dssp ------------------------TCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECSC
T ss_pred ------------------------CCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCC---CCEEEECCC
Confidence 23345677788889999999999 66788888 678887776 688999998
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhh--ccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~--~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
|..... +.+.+.++.. .+.++..|-+..... .+.. .++.+++++..+.++++|+..|+++++.+|
T Consensus 101 ~~~~~~----------~~l~~~~~~~--g~~~~~~pv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~g~~~~~~~~ 167 (299)
T 1vpd_A 101 IAPLAS----------REISDALKAK--GVEMLDAPVSGGEPKAIDGTL-SVMVGGDKAIFDKYYDLMKAMAGSVVHTGD 167 (299)
T ss_dssp CCHHHH----------HHHHHHHHTT--TCEEEECCEESHHHHHHHTCE-EEEEESCHHHHHHHHHHHHTTEEEEEEEES
T ss_pred CCHHHH----------HHHHHHHHHc--CCeEEEecCCCCHhHHhcCCE-EEEeCCCHHHHHHHHHHHHHHcCCeEEeCC
Confidence 875321 2344444321 112233333222111 2222 234466777889999999999999998888
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhcccCchhHHHHH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQ 355 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~ 355 (465)
.-...|.+.+-|. ...++..++.|+..++++.|.+++++..+ +.++. .+...+++ +.
T Consensus 168 ~~~~~~~Kl~~n~------------------~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~--~s~~~~~~--~~ 225 (299)
T 1vpd_A 168 IGAGNVTKLANQV------------------IVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLA--GSTVLDAK--AP 225 (299)
T ss_dssp TTHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTT--CCHHHHHH--HH
T ss_pred cCHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC--CCHHHHHh--hh
Confidence 7666676665553 23567789999999999999998876542 21111 00000111 11
Q ss_pred HHhcCCChhhHhHhhcCCcccchH-HHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 356 ELAKGRLTLDLGDSIKGKGMIQGI-SAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 356 ~l~~g~~~~~~~~~~~~~~~vEG~-~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
.+-++. ...+..++.. ...+.++++++++|+ + +|+++++|+++.
T Consensus 226 ~~l~~~--------~~~g~~~~~~~kd~~~~~~~a~~~gv--------------~-~p~~~~~~~~~~ 270 (299)
T 1vpd_A 226 MVMDRN--------FKPGFRIDLHIKDLANALDTSHGVGA--------------Q-LPLTAAVMEMMQ 270 (299)
T ss_dssp HHHTTC--------CCCSSBHHHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHH
T ss_pred HhhcCC--------CCCCCChHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 111111 0111233333 356789999999995 6 899999999886
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=170.03 Aligned_cols=207 Identities=12% Similarity=0.072 Sum_probs=151.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.+ .+. +.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~---------~~~---------------g~------ 44 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR-G-----HYLIGVSRQQSTCEKA---------VER---------------QL------ 44 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHH---------HHT---------------TS------
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH---------HhC---------------CC------
Confidence 6999999999999999999988 7 8999999988654431 110 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
...++++++++ .++|+||+|||++.+.++++++.+++++ +++|++++ ++...
T Consensus 45 -----------------------~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~~~~~---~~~vv~~~-~~~~~ 96 (279)
T 2f1k_A 45 -----------------------VDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIPHLSP---TAIVTDVA-SVKTA 96 (279)
T ss_dssp -----------------------CSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEECC-SCCHH
T ss_pred -----------------------CccccCCHHHh-CCCCEEEEECCHHHHHHHHHHHHhhCCC---CCEEEECC-CCcHH
Confidence 11245677777 8999999999999999999999988876 67888873 33322
Q ss_pred ccccccCCCHHHHHHhHhCC--CCccEE--EEeCCchhh-hhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 204 LEAVPRIITPTQMINRATGV--PIENIL--YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~--~~~~i~--vlsGP~~a~-ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
. . +.+.+.+.. +.+++. +.+||+++. ++..+.++.++.. .+++..+.++++|+..|++++..+|
T Consensus 97 ~--------~-~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~ 167 (279)
T 2f1k_A 97 I--------A-EPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTP 167 (279)
T ss_dssp H--------H-HHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred H--------H-HHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 0 1 223333321 012222 445788776 4566666555543 3567789999999999999999999
Q ss_pred hHHHHHHHHHHHH-HHHHHHhhhcccCCC----cchHHHHHHHHHHHHHHHH
Q 012349 277 LVTHEVMGGLKNV-YAIGAGMVAALTNES----ATSKSVYFAHCTSEMVFIT 323 (465)
Q Consensus 277 i~gve~~galKNv-iAia~Gi~~gl~~g~----~n~~a~li~~~~~E~~~l~ 323 (465)
....+|+++++|. ..+++++++++..++ .+....++++++.|+.+++
T Consensus 168 ~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~ 219 (279)
T 2f1k_A 168 ADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGFRDTSRVG 219 (279)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHHHHHHTGG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcccchhccc
Confidence 9999999999995 888889998876533 2455678889999987765
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=164.89 Aligned_cols=258 Identities=12% Similarity=0.091 Sum_probs=164.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|++. | ++|++|+|+++.++.+ .+.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~---------~~~---------------------- 72 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKM-G-----HTVTVWNRTAEKCDLF---------IQE---------------------- 72 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSGGGGHHH---------HHT----------------------
T ss_pred CCeEEEEcccHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHH---------HHc----------------------
Confidence 48999999999999999999988 7 8999999998654431 100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHHHHH---HhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFEEIS---RYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~~l~---~~l~~~~~~~ivIs~~k 198 (465)
++..++++.+++.++|+||+||| ++.+++++..+. +.+.+ +++||++++
T Consensus 73 ------------------------g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~---~~~vv~~s~ 125 (316)
T 2uyy_A 73 ------------------------GARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRP---GKCYVDMST 125 (316)
T ss_dssp ------------------------TCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCT---TCEEEECSC
T ss_pred ------------------------CCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCC---CCEEEECCC
Confidence 12345677788889999999999 788999887654 55555 678888887
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhh--hhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~e--v~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+-... .+.+.+.++.. .+.++.+|.+..+ ...+... .+++++++..+.++++|+..|++++...|
T Consensus 126 ~~~~~----------~~~l~~~~~~~--~~~~v~~p~~g~~~~~~~g~~~-~~~~g~~~~~~~v~~ll~~~g~~~~~~~~ 192 (316)
T 2uyy_A 126 VDADT----------VTELAQVIVSR--GGRFLEAPVSGNQQLSNDGMLV-ILAAGDRGLYEDCSSCFQAMGKTSFFLGE 192 (316)
T ss_dssp CCHHH----------HHHHHHHHHHT--TCEEEECCEESCHHHHHHTCEE-EEEEECHHHHHHTHHHHHHHEEEEEECSS
T ss_pred CCHHH----------HHHHHHHHHHc--CCEEEEcCccCChhHHhhCCEE-EEeCCCHHHHHHHHHHHHHhcCCEEEeCC
Confidence 53221 12233433211 1234555654322 2334322 33455677788999999999999988878
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhcccCchhHHHHH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQ 355 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~ 355 (465)
+....|.+.+.|. ..+. +..++.|+..++++.|.+++++... ..++.- +...++. ..
T Consensus 193 ~~~~~~~K~~~n~---~~~~---------------~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~--s~~~~~~--~~ 250 (316)
T 2uyy_A 193 VGNAAKMMLIVNM---VQGS---------------FMATIAEGLTLAQVTGQSQQTLLDILNQGQLA--SIFLDQK--CQ 250 (316)
T ss_dssp TTHHHHHHHHHHH---HHHH---------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTC--CHHHHHH--HH
T ss_pred CCHHHHHHHHHHH---HHHH---------------HHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCC--CHHHHHh--hH
Confidence 6545555444443 2221 4577899999999999998776542 111100 0000111 11
Q ss_pred HHhcCCChhhHhHhhcCCcccch-HHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 356 ELAKGRLTLDLGDSIKGKGMIQG-ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 356 ~l~~g~~~~~~~~~~~~~~~vEG-~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
.+-++. ...+.++|. ......+.+++++.|+ + +|+++++|+++.
T Consensus 251 ~~l~~~--------~~~g~~~~~~~kd~~~~~~~a~~~gv--------------~-~p~~~~v~~~~~ 295 (316)
T 2uyy_A 251 NILQGN--------FKPDFYLKYIQKDLRLAIALGDAVNH--------------P-TPMAAAANEVYK 295 (316)
T ss_dssp HHHHTC--------CCCSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred HhhcCC--------CCCCCcHHHHHHHHHHHHHHHHHhCC--------------C-ChHHHHHHHHHH
Confidence 111110 111223444 5566789999999995 6 899999999986
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=185.17 Aligned_cols=283 Identities=13% Similarity=0.040 Sum_probs=181.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||++||..|+++ | ++|++|+|++++++.++ +. .++
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~-G-----~~V~v~~r~~~~~~~l~---------~~-------------~~~------ 60 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESR-G-----YTVSIFNRSREKTEEVI---------AE-------------NPG------ 60 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSHHHHHHHH---------HH-------------STT------
T ss_pred CCeEEEEccHHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHH---------hh-------------CCC------
Confidence 47899999999999999999998 7 89999999987665421 10 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~---aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
.++..++++++++.+ +|+||++||+ +.++++++++.+++++ +++||+++|
T Consensus 61 -----------------------~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~---g~iIId~s~ 114 (480)
T 2zyd_A 61 -----------------------KKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDK---GDIIIDGGN 114 (480)
T ss_dssp -----------------------SCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHHHHHHGGGCCT---TCEEEECSC
T ss_pred -----------------------CCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHHhhcCC---CCEEEECCC
Confidence 035567888888776 9999999999 6899999999998876 689999999
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
|....+ ..+.+.+.+ .|.......+..||..+. .|. + ++++++++..+.++.+|+..+.++. |
T Consensus 115 g~~~~t------~~l~~~l~~-~g~~~v~~pv~gg~~~a~---~g~-~-i~~gg~~~~~~~v~~ll~~~g~~~~---d-- 177 (480)
T 2zyd_A 115 TFFQDT------IRRNRELSA-EGFNFIGTGVSGGEEGAL---KGP-S-IMPGGQKEAYELVAPILTKIAAVAE---D-- 177 (480)
T ss_dssp CCHHHH------HHHHHHHHH-TTCEEEEEEEESHHHHHH---HCC-E-EEEESCHHHHHHHHHHHHHHSCBCT---T--
T ss_pred CCHHHH------HHHHHHHHH-CCCCeeCCccccCHhHHh---cCC-e-EEecCCHHHHHHHHHHHHHHhcccc---C--
Confidence 986542 112233332 121101122333444432 343 3 5567778888999999987665410 1
Q ss_pred H---HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHH-hCCCcchhccC------c-hhhhhhccc-
Q 012349 279 T---HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLAGP------L-LADTYVTLL- 346 (465)
Q Consensus 279 g---ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a-~G~~~~t~~g~------g-lgDl~~T~~- 346 (465)
| +++.|. .|....+++. .|....++.+++.|+..++++ +|.+++++.++ | ++|++++|+
T Consensus 178 Ge~~v~~~g~--------~G~g~~~Kl~-~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~ 248 (480)
T 2zyd_A 178 GEPCVTYIGA--------DGAGHYVKMV-HNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITK 248 (480)
T ss_dssp SCBSBCCCBS--------TTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHH
T ss_pred CCceEEEECC--------ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 1 111111 1222333332 344456788999999999999 79998887652 4 788888885
Q ss_pred -CchhHHHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHH--HHHHhc
Q 012349 347 -KGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKML--YKILIM 423 (465)
Q Consensus 347 -~sRN~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~v--y~il~~ 423 (465)
..||+.+ ..+...+.+.+. .++..+| +.+.++++++|+ + +|++... ++++..
T Consensus 249 ~~l~~~d~----~~~~~v~~i~D~--~~~k~tG----~~~~~~A~~~gv--------------~-~Pi~~~av~ar~~s~ 303 (480)
T 2zyd_A 249 DIFTKKDE----DGNYLVDVILDE--AANKGTG----KWTSQSALDLGE--------------P-LSLITESVFARYISS 303 (480)
T ss_dssp HHHHCBCT----TSSBGGGGBCCC--CCCCSCT----THHHHHHHHHTC--------------C-CHHHHHHHHHHHHHT
T ss_pred HHHhcCCC----CCcchHHHHHHH--hcCchHH----HHHHHHHHHcCC--------------C-CchHHHHHHHHhhhc
Confidence 2334333 223333222211 1223455 356788999994 6 8999984 777776
Q ss_pred CCCHHHHHHHHHh
Q 012349 424 RESPIQAILEALR 436 (465)
Q Consensus 424 ~~~~~~~~~~ll~ 436 (465)
.++.......++.
T Consensus 304 ~k~~R~~~~~~~~ 316 (480)
T 2zyd_A 304 LKDQRVAASKVLS 316 (480)
T ss_dssp CHHHHHHHHTTCC
T ss_pred chhhhHHhhcccC
Confidence 5554444444443
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=164.63 Aligned_cols=265 Identities=13% Similarity=0.086 Sum_probs=173.6
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
.+..+|||+|||+|.||+++|..|+++ | ++|++|+|+++.++.+ .+
T Consensus 17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~l---------~~------------------- 62 (310)
T 3doj_A 17 RGSHMMEVGFLGLGIMGKAMSMNLLKN-G-----FKVTVWNRTLSKCDEL---------VE------------------- 62 (310)
T ss_dssp -CCCSCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSGGGGHHH---------HH-------------------
T ss_pred ccccCCEEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHH---------HH-------------------
Confidence 344678999999999999999999998 8 8999999998765431 10
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH---HHHHHhhhccCCCCEEE
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF---EEISRYWKERITVPVII 194 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl---~~l~~~l~~~~~~~ivI 194 (465)
.++..++++++++.++|+||+|||. ..+++++ +.+.+.+.+ +++||
T Consensus 63 ---------------------------~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---g~~vv 112 (310)
T 3doj_A 63 ---------------------------HGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICE---GKGYI 112 (310)
T ss_dssp ---------------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCT---TCEEE
T ss_pred ---------------------------CCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCC---CCEEE
Confidence 0244567888889999999999986 5888888 778777766 67777
Q ss_pred EeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEec
Q 012349 195 SLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN 274 (465)
Q Consensus 195 s~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s 274 (465)
.++ ++.+.+ ...+.+.+.+ .|.......+..+|..+. .+..+ ++++++++..+.++.+|+..+.+++..
T Consensus 113 ~~s-t~~~~~-----~~~~~~~~~~-~g~~~v~~pv~g~~~~a~---~g~l~-i~~gg~~~~~~~~~~ll~~~g~~~~~~ 181 (310)
T 3doj_A 113 DMS-TVDAET-----SLKINEAITG-KGGRFVEGPVSGSKKPAE---DGQLI-ILAAGDKALFEESIPAFDVLGKRSFYL 181 (310)
T ss_dssp ECS-CCCHHH-----HHHHHHHHHH-TTCEEEECCEECCHHHHH---HTCEE-EEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_pred ECC-CCCHHH-----HHHHHHHHHH-cCCEEEeCCCCCChhHHh---cCCeE-EEEcCCHHHHHHHHHHHHHhCCCEEEe
Confidence 766 444331 1222233322 121100011333444332 34332 345667788899999999888888888
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhcccCchhHHH
Q 012349 275 GDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWY 353 (465)
Q Consensus 275 ~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~ 353 (465)
.+.-..++.+.+-|.+ ...+..+++|+..++++.|.+++++... +.+ ...+...+| .
T Consensus 182 g~~g~a~~~Kl~~N~~------------------~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~--~~~s~~~~~--~ 239 (310)
T 3doj_A 182 GQVGNGAKMKLIVNMI------------------MGSMMNAFSEGLVLADKSGLSSDTLLDILDLG--AMTNPMFKG--K 239 (310)
T ss_dssp SSTTHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHS--TTCCHHHHH--H
T ss_pred CCcCHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc--ccccHHHHH--H
Confidence 7765566666555532 1234467899999999999999887542 111 000011222 2
Q ss_pred HHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 354 GQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 354 G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
|..+.++.-. .+-..-.+....+.+.+++++.|+ + +|+++.+++++.
T Consensus 240 ~~~~~~~~~~-------~~f~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 286 (310)
T 3doj_A 240 GPSMNKSSYP-------PAFPLKHQQKDMRLALALGDENAV--------------S-MPVAAAANEAFK 286 (310)
T ss_dssp HHHHHTTCCC-------CSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred hhhhhcCCCC-------CCccHHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 4445443210 011234677788899999999995 6 899999999885
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=175.91 Aligned_cols=281 Identities=12% Similarity=0.070 Sum_probs=177.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|+|++++++.++. ..+ +. +. +
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~~--------~~g--------~~---~~-----~- 50 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK-G-----FKVAVFNRTYSKSEEFMK--------ANA--------SA---PF-----A- 50 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHH--------HTT--------TS---TT-----G-
T ss_pred CEEEEEChHHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHH--------hcC--------CC---CC-----C-
Confidence 7899999999999999999998 8 899999999876654221 101 00 10 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~---~aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.++..++++++++. ++|+||++||+. .++++++++.+++++ +++||++++|
T Consensus 51 ----------------------~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~---g~iIId~sng 105 (478)
T 1pgj_A 51 ----------------------GNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEK---GDILVDTGNA 105 (478)
T ss_dssp ----------------------GGEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCT---TCEEEECCCC
T ss_pred ----------------------CCeEEECCHHHHHhcccCCCEEEEecCChHHHHHHHHHHHhhCCC---CCEEEECCCC
Confidence 02556778888776 499999999995 899999999998876 6889999999
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCcc---EEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCe------
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIEN---ILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT------ 270 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~---i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~------ 270 (465)
....+ +.+.+.+...... ..+..||..+ ..|. + ++++++++..+.++++|+..+.+
T Consensus 106 ~~~~~----------~~l~~~l~~~g~~~v~~pv~gg~~~a---~~g~-~-i~~gg~~~~~~~v~~ll~~~g~~~~dg~~ 170 (478)
T 1pgj_A 106 HFKDQ----------GRRAQQLEAAGLRFLGMGISGGEEGA---RKGP-A-FFPGGTLSVWEEIRPIVEAAAAKADDGRP 170 (478)
T ss_dssp CHHHH----------HHHHHHHHTTTCEEEEEEEESHHHHH---HHCC-E-EEEEECHHHHHHHHHHHHHHSCBCTTSCB
T ss_pred ChHHH----------HHHHHHHHHCCCeEEEeeccCCHHHH---hcCC-e-EeccCCHHHHHHHHHHHHHhcccccCCCe
Confidence 86541 2233333211111 1233334322 2333 3 44566777788999999876655
Q ss_pred -EEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-c----hhhhhhc
Q 012349 271 -VWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-L----LADTYVT 344 (465)
Q Consensus 271 -v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-g----lgDl~~T 344 (465)
+....+. |....+++. .|....++.+++.|+..+++++|.+++++.+. . -|++ +
T Consensus 171 ~v~~~g~~-----------------G~g~~~Kl~-~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~--~ 230 (478)
T 1pgj_A 171 CVTMNGSG-----------------GAGSCVKMY-HNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFL--K 230 (478)
T ss_dssp SCCCCCST-----------------THHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTT--C
T ss_pred eEEEeCCc-----------------hHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCc--C
Confidence 2222221 111112222 23334567899999999999999998776542 1 1111 1
Q ss_pred ccCchhHHHHHHHh----cCCC-hhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHH-HH
Q 012349 345 LLKGRNAWYGQELA----KGRL-TLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKM-LY 418 (465)
Q Consensus 345 ~~~sRN~~~G~~l~----~g~~-~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~-vy 418 (465)
.+..+++. ..+. .|.. .+.+.+.. ++ .| |.+.++++++++|+ + +|+++. ||
T Consensus 231 s~l~~~~~--~~l~~~d~~G~~~ld~i~D~~--~~--kg--tg~~~~~~A~~~Gv--------------~-~Pi~~~av~ 287 (478)
T 1pgj_A 231 SYMLDISI--AAARAKDKDGSYLTEHVMDRI--GS--KG--TGLWSAQEALEIGV--------------P-APSLNMAVV 287 (478)
T ss_dssp BHHHHHHH--HHHHCBCTTSSBGGGGBCCCC--CC--CS--HHHHHHHHHHHHTC--------------C-CHHHHHHHH
T ss_pred chHHHhhc--hhhhcCCCCChhHHHHHHHHh--cC--cc--HHHHHHHHHHHhCC--------------C-ChHHHHHHH
Confidence 11233332 2232 2321 11111100 01 12 55789999999994 7 899998 76
Q ss_pred -HHHhcCCCHHHHHHHHHhcc
Q 012349 419 -KILIMRESPIQAILEALRDE 438 (465)
Q Consensus 419 -~il~~~~~~~~~~~~ll~~~ 438 (465)
++++..+++.+++.++|.-+
T Consensus 288 ~r~ls~~~~~r~~~~~~l~~~ 308 (478)
T 1pgj_A 288 SRQFTMYKTERQANASNAPGI 308 (478)
T ss_dssp HHHHHHTHHHHHHHHHHSTTT
T ss_pred HHHHhCCCCHHHHHHHhcCCC
Confidence 99999999999999988655
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-17 Score=161.55 Aligned_cols=263 Identities=10% Similarity=0.022 Sum_probs=168.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.+ .+. +
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~~---------~~~---------------g----- 50 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRA-G-----LSTWGADLNPQACANL---------LAE---------------G----- 50 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHH---------HHT---------------T-----
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHH---------HHc---------------C-----
Confidence 458999999999999999999998 8 8999999998765531 110 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH---HHHHHhhhccCCCCEEEEee
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF---EEISRYWKERITVPVIISLA 197 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl---~~l~~~l~~~~~~~ivIs~~ 197 (465)
...++++++++++++|+||+|||+. .+++++ +.+.+.+++ +++||.++
T Consensus 51 -------------------------~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~---g~ivv~~s 102 (303)
T 3g0o_A 51 -------------------------ACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKP---GSAVMVSS 102 (303)
T ss_dssp -------------------------CSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCT---TCEEEECS
T ss_pred -------------------------CccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCC---CCEEEecC
Confidence 0112567778889999999999984 788887 778887776 67887776
Q ss_pred ccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC-
Q 012349 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD- 276 (465)
Q Consensus 198 kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D- 276 (465)
+. .+.+ ...+.+.+.+ .|.......+..+|..+. .+.. .++++++++..+.++++|+..+.+++...+
T Consensus 103 t~-~~~~-----~~~~~~~~~~-~g~~~~~~pv~g~~~~a~---~g~l-~~~~gg~~~~~~~~~~ll~~~g~~~~~~~~~ 171 (303)
T 3g0o_A 103 TI-SSAD-----AQEIAAALTA-LNLNMLDAPVSGGAVKAA---QGEM-TVMASGSEAAFTRLKPVLDAVASNVYRISDT 171 (303)
T ss_dssp CC-CHHH-----HHHHHHHHHT-TTCEEEECCEESCHHHHH---TTCE-EEEEECCHHHHHHHHHHHHHHEEEEEEEESS
T ss_pred CC-CHHH-----HHHHHHHHHH-cCCeEEeCCCCCChhhhh---cCCe-EEEeCCCHHHHHHHHHHHHHHCCCEEECCCC
Confidence 43 3321 1112222222 121000011233333332 3332 234567788889999999988888776666
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhcccCchhHHHHH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQ 355 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~ 355 (465)
+-..+|.+.+-|.+ ..++..+++|+..++++.|.+++++... +.+ ...+...+|+ +.
T Consensus 172 ~g~a~~~Kl~~N~~------------------~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~--~~~s~~~~~~--~~ 229 (303)
T 3g0o_A 172 PGAGSTVKIIHQLL------------------AGVHIAAAAEAMALAARAGIPLDVMYDVVTHA--AGNSWMFENR--MQ 229 (303)
T ss_dssp TTHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTS--TTCCHHHHHH--HH
T ss_pred CcHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc--ccCCHHHHhh--hH
Confidence 65567766655532 2344577999999999999999887542 111 0111123333 33
Q ss_pred HHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 356 ELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 356 ~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
.+.++.-. .+...-......+.+.+++++.|+ + +|+++.+++++.
T Consensus 230 ~~~~~~~~-------~~~~~~~~~kD~~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 274 (303)
T 3g0o_A 230 HVVDGDYT-------PRSAVDIFVKDLGLVADTAKALRF--------------P-LPLASTALNMFT 274 (303)
T ss_dssp HHHTTCCC-------CSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred HHhcCCCC-------CCCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 34333210 011123566777789999999995 6 899999999885
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5e-17 Score=172.36 Aligned_cols=277 Identities=12% Similarity=0.029 Sum_probs=173.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|.+|+|++++++.++ ++. .++
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~---------~~~------------~~g------- 48 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFL---------ANE------------AKG------- 48 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHH---------HTT------------TTT-------
T ss_pred CeEEEEChHHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHH---------hcc------------ccC-------
Confidence 7899999999999999999998 7 89999999987665421 100 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHh---cCCCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV---WDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal---~~aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.++..++++++++ +++|+||++||+. .++++++++.+++++ +++||++++|
T Consensus 49 ----------------------~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~l~~~l~~---g~iII~~s~~ 103 (482)
T 2pgd_A 49 ----------------------TKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDI---GDIIIDGGNS 103 (482)
T ss_dssp ----------------------SSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCT---TCEEEECSCC
T ss_pred ----------------------CCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHHHHHHHHhhcCC---CCEEEECCCC
Confidence 0345677888876 4899999999995 899999999998876 6889999999
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
....+ ..+.+.+.+ .| +.++.+|....+...+..+.++.+++++..+.++++|+..+.++. +|..+
T Consensus 104 ~~~~~------~~l~~~l~~-~g-----~~~v~~pv~g~~~~a~~g~~i~~gg~~e~~~~v~~ll~~~g~~v~--d~~~~ 169 (482)
T 2pgd_A 104 EYRDT------MRRCRDLKD-KG-----ILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVG--TGEPC 169 (482)
T ss_dssp CHHHH------HHHHHHHHH-TT-----CEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHHSCBCT--TSCBS
T ss_pred CHHHH------HHHHHHHHH-cC-----CeEeCCCCCCChhhhccCCeEEeCCCHHHHHHHHHHHHHhhhhcc--CCCcc
Confidence 86542 111232322 12 223445554443332222234556677788999999998887751 22222
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHh-CCCcchhccC-c---hhhhhhcccCchhHHHH
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLL-AEEPEKLAGP-L---LADTYVTLLKGRNAWYG 354 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~-G~~~~t~~g~-g---lgDl~~T~~~sRN~~~G 354 (465)
+.+.+. .|....+++. .|....++.+++.|+..++++. |.+++++.++ + .|+ .+++..||+.
T Consensus 170 ~~~~g~--------~g~g~~~Kl~-~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~--~~S~l~~~~~-- 236 (482)
T 2pgd_A 170 CDWVGD--------DGAGHFVKMV-HNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTE--LDSFLIEITA-- 236 (482)
T ss_dssp CCCCEE--------TTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTT--TCBHHHHHHH--
T ss_pred eEEECC--------CcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCC--cCchHHHHHh--
Confidence 222111 1222223332 3344467789999999999998 9998876542 1 122 2223445553
Q ss_pred HHHhcCC-Ch-hhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHH-HHHHHHhcC
Q 012349 355 QELAKGR-LT-LDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILK-MLYKILIMR 424 (465)
Q Consensus 355 ~~l~~g~-~~-~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~-~vy~il~~~ 424 (465)
..+.++. +. ..+.. +. .......+.+.++++++++|+ + +|++. .+|+.+...
T Consensus 237 ~~l~~~d~~~~~~ld~-i~--d~~~~k~t~~~~~~~A~~~Gv--------------~-~P~i~~av~~~~~s~ 291 (482)
T 2pgd_A 237 SILKFQDADGKHLLPK-IR--DSAGQKGTGKWTAISALEYGV--------------P-VTLIGEAVFARCLSS 291 (482)
T ss_dssp HHHHCBCTTSSBSGGG-SC--CCCCCCSHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHHHH
T ss_pred HHhhccCCCCCeeecc-cc--cccccccHHHHHHHHHHHcCC--------------C-cchHHHHHHHHhhhh
Confidence 2333321 10 01111 10 122334566788999999994 7 89995 799988643
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=157.91 Aligned_cols=259 Identities=12% Similarity=0.063 Sum_probs=166.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+||||+|||+|+||+++|..|++. | ++|++|+ +++.++.+ .+.
T Consensus 2 ~~m~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~-~~~~~~~~---------~~~--------------------- 44 (295)
T 1yb4_A 2 NAMKLGFIGLGIMGSPMAINLARA-G-----HQLHVTT-IGPVADEL---------LSL--------------------- 44 (295)
T ss_dssp --CEEEECCCSTTHHHHHHHHHHT-T-----CEEEECC-SSCCCHHH---------HTT---------------------
T ss_pred CCCEEEEEccCHHHHHHHHHHHhC-C-----CEEEEEc-CHHHHHHH---------HHc---------------------
Confidence 458999999999999999999988 7 8999999 77654431 100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-HHHHHH---HHHHhhhccCCCCEEEEee
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFE---EISRYWKERITVPVIISLA 197 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-l~~vl~---~l~~~l~~~~~~~ivIs~~ 197 (465)
++..++++++++.++|+||+|||... ++.++. ++.+.+++ +++||+++
T Consensus 45 -------------------------g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vv~~s 96 (295)
T 1yb4_A 45 -------------------------GAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQ---GKTIVDMS 96 (295)
T ss_dssp -------------------------TCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCT---TEEEEECS
T ss_pred -------------------------CCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCC---CCEEEECC
Confidence 12234567788889999999997665 888887 77777765 67888898
Q ss_pred ccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhh--hhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecC
Q 012349 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 198 kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~e--v~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
+|.... .+.+.+.++.. .+.++..|..... ...+..+ ++++++++..+.++++|+..+++++...
T Consensus 97 ~~~~~~----------~~~l~~~~~~~--g~~~~~~p~~~~~~~a~~g~~~-~~~~~~~~~~~~~~~ll~~~g~~~~~~~ 163 (295)
T 1yb4_A 97 SISPIE----------TKRFAQRVNEM--GADYLDAPVSGGEIGAREGTLS-IMVGGEQKVFDRVKPLFDILGKNITLVG 163 (295)
T ss_dssp CCCHHH----------HHHHHHHHHTT--TEEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCHHH----------HHHHHHHHHHc--CCeEEEccCCCCHHHHHcCCeE-EEECCCHHHHHHHHHHHHHhcCCEEEeC
Confidence 874322 12343433221 1222333333211 1134433 3456677788999999999999888877
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhcccCchhHHHH
Q 012349 276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYG 354 (465)
Q Consensus 276 Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G 354 (465)
|.-...|.+.+-|.+ ..++..++.|+..++++.|.+++++... ..++ .++...+| ..+
T Consensus 164 ~~~~~~~~Kl~~n~~------------------~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~--~~s~~~~~-~~~ 222 (295)
T 1yb4_A 164 GNGDGQTCKVANQII------------------VALNIEAVSEALVFASKAGADPVRVRQALMGGF--ASSRILEV-HGE 222 (295)
T ss_dssp STTHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSS--SCBHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCC--CCCHHHHH-hhH
Confidence 766666777666642 2456678999999999999988776542 1111 11111222 222
Q ss_pred HHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 355 QELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 355 ~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
..+.+..+ .+..+-.....+..+.++++++|+ + +|+++++++++.
T Consensus 223 ~~~~~~~~--------~g~~~~~~~kd~~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 267 (295)
T 1yb4_A 223 RMINRTFE--------PGFKIALHQKDLNLALQSAKALAL--------------N-LPNTATCQELFN 267 (295)
T ss_dssp HHHTTCCC--------CSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred HHhcCCCC--------CCCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 22222111 111122334566789999999995 6 899999999886
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=158.21 Aligned_cols=276 Identities=12% Similarity=0.110 Sum_probs=164.9
Q ss_pred chhHHHhHHHhhhhc-CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchh
Q 012349 23 GSLEERLDELRRLMG-KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSRE 101 (465)
Q Consensus 23 ~~~~~~~~~~~~~~~-~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~ 101 (465)
+....+-.-+.+.|. +....+|||+|||+|.||+++|..|+++ | ++|++|+|+++.++++ .+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~a~~l~~~-G-----~~V~~~dr~~~~~~~l---------~~-- 72 (320)
T 4dll_A 10 GVDLGTENLYFQSMTVESDPYARKITFLGTGSMGLPMARRLCEA-G-----YALQVWNRTPARAASL---------AA-- 72 (320)
T ss_dssp -------------------CCCSEEEEECCTTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHH---------HT--
T ss_pred cccccccccceechhhccccCCCEEEEECccHHHHHHHHHHHhC-C-----CeEEEEcCCHHHHHHH---------HH--
Confidence 444444443444433 2344568999999999999999999998 8 8999999998755431 10
Q ss_pred hhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH--
Q 012349 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-- 178 (465)
Q Consensus 102 ~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-- 178 (465)
.++..+++++++++++|+||++||. ..+++++.
T Consensus 73 --------------------------------------------~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~ 108 (320)
T 4dll_A 73 --------------------------------------------LGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ 108 (320)
T ss_dssp --------------------------------------------TTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred --------------------------------------------CCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence 0245678888999999999999995 68888887
Q ss_pred HHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhh--ccCceEEEEeCChhH
Q 012349 179 EISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIY--NKEYANARICGAEKW 256 (465)
Q Consensus 179 ~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~--~g~~t~~~~~~~~~~ 256 (465)
.+.+.+.+ +++||.++.+- +.+ ...+.+.+.+ .| +.++..|-+..+.. .+..+ ++++++++.
T Consensus 109 ~~~~~l~~---~~~vi~~st~~-~~~-----~~~~~~~~~~-~g-----~~~~~~pv~g~~~~a~~g~l~-i~~gg~~~~ 172 (320)
T 4dll_A 109 GVAAAMKP---GSLFLDMASIT-PRE-----ARDHAARLGA-LG-----IAHLDTPVSGGTVGAEQGTLV-IMAGGKPAD 172 (320)
T ss_dssp CHHHHCCT---TCEEEECSCCC-HHH-----HHHHHHHHHH-TT-----CEEEECCEECHHHHHHHTCEE-EEEESCHHH
T ss_pred hHHhhCCC---CCEEEecCCCC-HHH-----HHHHHHHHHH-cC-----CEEEeCCCcCCHhHHhcCCee-EEeCCCHHH
Confidence 77777766 67787776543 321 1112222222 12 12334444433221 34332 456777888
Q ss_pred HHHHHHHHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC
Q 012349 257 RKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP 336 (465)
Q Consensus 257 ~~~l~~ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~ 336 (465)
.+.++.+|+.. .+++...+.-..++.+.+-|.+ ......+++|+..++++.|.+++++..
T Consensus 173 ~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~------------------~~~~~~~~~Ea~~l~~~~G~d~~~~~~- 232 (320)
T 4dll_A 173 FERSLPLLKVF-GRATHVGPHGSGQLTKLANQMI------------------VGITIGAVAEALLFATKGGADMAKVKE- 232 (320)
T ss_dssp HHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHTSCCHHHHHH-
T ss_pred HHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHcCCCHHHHHH-
Confidence 88899999877 6777666654455555444421 134456799999999999999887754
Q ss_pred chhhhhhccc-CchhH-HHHHHHhcCC-ChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcH
Q 012349 337 LLADTYVTLL-KGRNA-WYGQELAKGR-LTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPI 413 (465)
Q Consensus 337 glgDl~~T~~-~sRN~-~~G~~l~~g~-~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi 413 (465)
++.... .|+-. ..+..+-++. .. +-..--.....+.+.+++++.|+ + +|+
T Consensus 233 ----~~~~~~~~s~~~~~~~~~~l~~~~~~--------gf~~~~~~KDl~~~~~~a~~~g~--------------~-~p~ 285 (320)
T 4dll_A 233 ----AITGGFADSRVLQLHGQRMVERDFAP--------RARLSIQLKDMRNALATAQEIGF--------------D-API 285 (320)
T ss_dssp ----HHTTSTTCBHHHHTHHHHHHTTCCCC--------SSBHHHHHHHHHHHHHHHHHTTC--------------C-CHH
T ss_pred ----HHHcccccCHHHHHhhhhhccCCCCC--------cccHHHHHHHHHHHHHHHHHcCC--------------C-ChH
Confidence 111111 11110 1222332221 10 00112345566689999999995 6 899
Q ss_pred HHHHHHHHh
Q 012349 414 LKMLYKILI 422 (465)
Q Consensus 414 ~~~vy~il~ 422 (465)
++.+.+++.
T Consensus 286 ~~~~~~~~~ 294 (320)
T 4dll_A 286 TGLFEQLYA 294 (320)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888875
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-17 Score=158.84 Aligned_cols=252 Identities=14% Similarity=0.083 Sum_probs=159.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ | ++|++|+|+++.++.+ .+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~---------~~------------------------ 41 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH-G-----YPLIIYDVFPDACKEF---------QD------------------------ 41 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT-T-----CCEEEECSSTHHHHHH---------HT------------------------
T ss_pred CeEEEEeccHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHH---------HH------------------------
Confidence 6899999999999999999988 7 8999999998654431 10
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHHHHH---HhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFEEIS---RYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~~l~---~~l~~~~~~~ivIs~~kG 199 (465)
..+.+++++++++.++|+||+||| ++.+++++.++. +.+++ ++++|+ ++|
T Consensus 42 ----------------------~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~~~l~~---~~~vv~-~s~ 95 (296)
T 2gf2_A 42 ----------------------AGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKK---GSLLID-SST 95 (296)
T ss_dssp ----------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGGGTCCT---TCEEEE-CSC
T ss_pred ----------------------cCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHHhcCCC---CCEEEE-CCC
Confidence 023456778888889999999995 668899888754 34454 678888 889
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
+.+++ ...+.+.+.+ .+.......+..||.++. .+.. .+..+.+++..+.++++|+..|++++...+.-.
T Consensus 96 ~~~~~-----~~~~~~~~~~-~g~~~~~~p~~~g~~~a~---~~~~-~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~g~ 165 (296)
T 2gf2_A 96 IDPAV-----SKELAKEVEK-MGAVFMDAPVSGGVGAAR---SGNL-TFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGT 165 (296)
T ss_dssp CCHHH-----HHHHHHHHHH-TTCEEEECCEESHHHHHH---HTCE-EEEEESCGGGHHHHHHHHTTTEEEEEEEESTTH
T ss_pred CCHHH-----HHHHHHHHHH-cCCEEEEcCCCCChhHHh---cCcE-EEEeCCCHHHHHHHHHHHHHHcCCeEEeCCccH
Confidence 87752 1112222322 121000001233333222 2332 234566778889999999999998876554211
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhh---hhhccc---------
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLAD---TYVTLL--------- 346 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgD---l~~T~~--------- 346 (465)
..+.+ +. +|....++..++.|+..+++++|.+++++..+ ..++ ..+++.
T Consensus 166 ~~~~k-----------------l~-~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 227 (296)
T 2gf2_A 166 GQAAK-----------------IC-NNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDG 227 (296)
T ss_dssp HHHHH-----------------HH-HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSS
T ss_pred HHHHH-----------------HH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCccccccc
Confidence 12221 21 23333566788999999999999998776542 1111 111110
Q ss_pred --CchhHHHHHHHhcCCChhhHhHhhcCCcccc-hHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 347 --KGRNAWYGQELAKGRLTLDLGDSIKGKGMIQ-GISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 347 --~sRN~~~G~~l~~g~~~~~~~~~~~~~~~vE-G~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
.+|++. .+..++ ....++.++++++++|+ + +|+++++|+++.
T Consensus 228 s~~~~~~~-------------------~g~~~~~~~kd~~~~~~~a~~~gv--------------~-~p~~~~~~~~~~ 272 (296)
T 2gf2_A 228 VPSANNYQ-------------------GGFGTTLMAKDLGLAQDSATSTKS--------------P-ILLGSLAHQIYR 272 (296)
T ss_dssp SGGGGTTC-------------------SSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred chhccCCC-------------------CCCchHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 112211 111222 35567789999999995 6 899999999886
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.72 E-value=7e-16 Score=155.00 Aligned_cols=252 Identities=11% Similarity=0.013 Sum_probs=166.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|.||+++|..|+++ |. ++|++|+|+++..++.. +..+. +..
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~-G~----~~V~~~dr~~~~~~~~~-----~~~~~--------------~~~------ 73 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGR-NA----ARLAAYDLRFNDPAASG-----ALRAR--------------AAE------ 73 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-TC----SEEEEECGGGGCTTTHH-----HHHHH--------------HHH------
T ss_pred CCeEEEECccHHHHHHHHHHHHc-CC----CeEEEEeCCCccccchH-----HHHHH--------------HHH------
Confidence 48999999999999999999988 51 78999999974322210 00100 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEec-CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVT-NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~-dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
..+ ++ ++.++++++|+||+|||++...+.++.+.+.+++ +++||+++ ++.
T Consensus 74 -----------------------~g~--~~~s~~e~~~~aDvVi~avp~~~~~~~~~~i~~~l~~---~~ivv~~s-t~~ 124 (317)
T 4ezb_A 74 -----------------------LGV--EPLDDVAGIACADVVLSLVVGAATKAVAASAAPHLSD---EAVFIDLN-SVG 124 (317)
T ss_dssp -----------------------TTC--EEESSGGGGGGCSEEEECCCGGGHHHHHHHHGGGCCT---TCEEEECC-SCC
T ss_pred -----------------------CCC--CCCCHHHHHhcCCEEEEecCCHHHHHHHHHHHhhcCC---CCEEEECC-CCC
Confidence 023 34 6778889999999999999988888999888876 67888776 555
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC-hHHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD-LVTH 280 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D-i~gv 280 (465)
+.+ ...+.+.+.+ .|.... -+-++||..+. .+.++ ++++++++ +.++.+|+..+.+++...+ +-..
T Consensus 125 p~~-----~~~~~~~l~~-~g~~~~-d~pv~g~~~a~---~g~l~-i~vgg~~~--~~~~~ll~~~g~~v~~~g~~~g~a 191 (317)
T 4ezb_A 125 PDT-----KALAAGAIAT-GKGSFV-EGAVMARVPPY---AEKVP-ILVAGRRA--VEVAERLNALGMNLEAVGETPGQA 191 (317)
T ss_dssp HHH-----HHHHHHHHHT-SSCEEE-EEEECSCSTTT---GGGSE-EEEESTTH--HHHHHHHHTTTCEEEEEESSTTHH
T ss_pred HHH-----HHHHHHHHHH-cCCeEE-eccCCCCchhh---cCCEE-EEEeCChH--HHHHHHHHHhCCCeEEeCCCcCHH
Confidence 542 2223333332 121101 13467886543 34444 44555544 8899999999988877776 6667
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC--ch-h-hhhhcc--cCchhHHHH
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP--LL-A-DTYVTL--LKGRNAWYG 354 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~--gl-g-Dl~~T~--~~sRN~~~G 354 (465)
++.|.+-|.+. .....+++|+..+++++|.+++.+..+ +. + ++...+ ..+|++..|
T Consensus 192 ~~~Kl~~N~~~------------------~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 253 (317)
T 4ezb_A 192 SSLKMIRSVMI------------------KGVEALLIEALSSAERAGVTERILDSVQETFPGLDWRDVADYYLSRTFEHG 253 (317)
T ss_dssp HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCccccHHHhhhhhhcCCCCCC
Confidence 77766666422 344577899999999999998765442 11 1 222222 245555555
Q ss_pred HHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHH
Q 012349 355 QELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKI 420 (465)
Q Consensus 355 ~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~i 420 (465)
..+ ....+.+.+++++.|+ + +|+++.++++
T Consensus 254 ~~~---------------------~KDl~~~~~~a~~~g~--------------~-~pl~~~~~~~ 283 (317)
T 4ezb_A 254 ARR---------------------VTEMTEAAETIESFGL--------------N-APMSRAACET 283 (317)
T ss_dssp HHH---------------------HHHHHHHHHHHHTTTC--------------C-CHHHHHHHHH
T ss_pred cch---------------------HHHHHHHHHHHHHcCC--------------C-ChHHHHHHHH
Confidence 443 2334578899999994 6 7999999988
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=157.15 Aligned_cols=252 Identities=13% Similarity=0.098 Sum_probs=165.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++|||+|||+|+||++++..|++. | ++|++|+|+++.++.+ .+
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~-g-----~~V~~~~~~~~~~~~~---------~~---------------------- 45 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKE-G-----VTVYAFDLMEANVAAV---------VA---------------------- 45 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHH---------HT----------------------
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHH---------HH----------------------
Confidence 358999999999999999999988 7 8999999987654421 10
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHHH---HHHHhhhccCCCCEEEEee
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVFE---EISRYWKERITVPVIISLA 197 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl~---~l~~~l~~~~~~~ivIs~~ 197 (465)
.++..++++++++.++|+||+||| +..++.++. ++.+.+++ +++||+++
T Consensus 46 ------------------------~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~---~~~vv~~~ 98 (301)
T 3cky_A 46 ------------------------QGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKA---GTVIVDMS 98 (301)
T ss_dssp ------------------------TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCT---TCEEEECC
T ss_pred ------------------------CCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCC---CCEEEECC
Confidence 023345677788889999999997 566888885 78887776 68999999
Q ss_pred ccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhh--hccCceEEEEeCChhHHHHHHHHHcCCCCeEEecC
Q 012349 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 198 kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev--~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
+|..... +.+.+.++... +.++..|....+. ..+..+ +.++++++..+.++++|+..+++++...
T Consensus 99 ~~~~~~~----------~~l~~~~~~~g--~~~~~~p~~~~~~~a~~g~~~-~~~~g~~~~~~~v~~ll~~~g~~~~~~~ 165 (301)
T 3cky_A 99 SVSPSST----------LKMAKVAAEKG--IDYVDAPVSGGTKGAEAGTLT-IMVGASEAVFEKIQPVLSVIGKDIYHVG 165 (301)
T ss_dssp CCCHHHH----------HHHHHHHHHTT--CEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCHHHH----------HHHHHHHHHcC--CeEEEccCCCCHHHHHcCCeE-EEECCCHHHHHHHHHHHHHhcCCEEEeC
Confidence 8874221 22333332111 1122334332221 124333 3345677788999999999999888776
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC---c-hhhhh--hcc---c
Q 012349 276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP---L-LADTY--VTL---L 346 (465)
Q Consensus 276 Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~---g-lgDl~--~T~---~ 346 (465)
+.-...|.+.+-|. ...++..++.|+..++++.|.+++++... + .++.. .++ .
T Consensus 166 ~~g~~~~~Kl~~N~------------------~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (301)
T 3cky_A 166 DTGAGDAVKIVNNL------------------LLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFI 227 (301)
T ss_dssp STTHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCC
T ss_pred CCCHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhh
Confidence 65555666665552 22456788999999999999988766431 1 11111 011 1
Q ss_pred CchhHHHHHHHhcCCChhhHhHhhcCCcccch-HHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 347 KGRNAWYGQELAKGRLTLDLGDSIKGKGMIQG-ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 347 ~sRN~~~G~~l~~g~~~~~~~~~~~~~~~vEG-~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
.+||+.. +.+++. ......++++++++|+ + +|+++++|+++.
T Consensus 228 l~~~~~~-------------------g~~~~~~~kd~~~~~~~a~~~gv--------------~-~p~~~~~~~~~~ 270 (301)
T 3cky_A 228 MSGDFAG-------------------GFAMDLQHKDLGLALEAGKEGNV--------------P-LPMTAMATQIFE 270 (301)
T ss_dssp CTCCCSS-------------------SSBHHHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHH
T ss_pred hcCCCCC-------------------CccHHHHHHHHHHHHHHHHHhCC--------------C-ChHHHHHHHHHH
Confidence 1222211 112222 2344688999999995 6 899999999886
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-16 Score=166.18 Aligned_cols=224 Identities=11% Similarity=0.052 Sum_probs=160.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCch----hhhhhhhhhhHHHHhchhhhHHhhhhccc--cc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR----SVDRATAEHLFEVINSREDVLRRLIRRCA--YL 114 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~----~~~~i~~~~l~~~i~~~~~~~~~~~~n~~--~l 114 (465)
.+|||+|||+|+||+.+|..|+++.| + +|++|+++++ +++.+ +++. ++. |.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G-----~~~V~~~D~~~~~~~~kv~~l---------~~g~--------~~i~~~e 74 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPC-----FEKVLGFQRNSKSSGYKIEML---------NRGE--------SPLKGEE 74 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTT-----CCEEEEECCCCTTTTTHHHHH---------TTTC--------CCSSCCG
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CCeEEEEECChhHhHHHHHHH---------HhcC--------CCccccC
Confidence 45899999999999999999998624 8 9999999998 77653 3321 233 44
Q ss_pred chhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch------------HHHHHHHHHH
Q 012349 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE------------TKEVFEEISR 182 (465)
Q Consensus 115 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~------------l~~vl~~l~~ 182 (465)
+++. +++.++.. ..++.+|+| .+++.+||+||+|||+.. +.++++.|.+
T Consensus 75 ~gl~-----------~l~~~~~~-------~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~ 135 (478)
T 3g79_A 75 PGLE-----------ELIGKVVK-------AGKFECTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGK 135 (478)
T ss_dssp GGHH-----------HHHHHHHH-------TTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHH
T ss_pred CCHH-----------HHHHhhcc-------cCCeEEeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHh
Confidence 4432 12211000 025788898 578899999999999763 7788899999
Q ss_pred hhhccCCCCEEEEeeccccccccccccCCCHHHH-HHhHhCCC-CccEEEEeCCchhhhhhc----cCceEEEEeCChhH
Q 012349 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQM-INRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKW 256 (465)
Q Consensus 183 ~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~-I~e~lg~~-~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~~~~ 256 (465)
++++ +++|| ..+++++. +.+.+.+. +++..|.. ...+.++++|.++.+... ..+..++.+.+++.
T Consensus 136 ~l~~---g~iVV-~~STv~pg-----tt~~v~~~ile~~~g~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~ 206 (478)
T 3g79_A 136 YLKP---GMLVV-LESTITPG-----TTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEAS 206 (478)
T ss_dssp HCCT---TCEEE-ECSCCCTT-----TTTTHHHHHHHHHHCCCBTTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHH
T ss_pred hcCC---CcEEE-EeCCCChH-----HHHHHHHHHHHHhcCCCcCCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHH
Confidence 8886 56655 55588887 45667653 43555532 134678999999887553 12344566778888
Q ss_pred HHHHHHHHcCC-CCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 257 RKPLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 257 ~~~l~~ll~~~-g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
.+.++.+|+.. +..++...|+...|+.|.+.|.+- +.-...++|+..+|+++|.++..+
T Consensus 207 ~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~------------------a~~Ia~~nE~~~l~e~~GiD~~~v 266 (478)
T 3g79_A 207 TKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFR------------------DLQIAAINQLALYCEAMGINVYDV 266 (478)
T ss_dssp HHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 89999999987 677888899999999998888521 122356889999999999877654
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=153.06 Aligned_cols=256 Identities=15% Similarity=0.135 Sum_probs=161.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||+|||+|+||+++|..|++ | ++|++|+|+++.++.+. +. +
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~--g-----~~V~~~~~~~~~~~~~~---------~~---------------g------ 43 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR--R-----FPTLVWNRTFEKALRHQ---------EE---------------F------ 43 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT--T-----SCEEEECSSTHHHHHHH---------HH---------------H------
T ss_pred CCeEEEEcccHHHHHHHHHHhC--C-----CeEEEEeCCHHHHHHHH---------HC---------------C------
Confidence 4799999999999999999986 5 89999999987554311 10 1
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-HHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+..++ +.+++.++|+||+|||+.. ++++++++.+.+++ ++++++++++-.
T Consensus 44 -------------------------~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~l~~---~~~vv~~s~~~~ 94 (289)
T 2cvz_A 44 -------------------------GSEAV-PLERVAEARVIFTCLPTTREVYEVAEALYPYLRE---GTYWVDATSGEP 94 (289)
T ss_dssp -------------------------CCEEC-CGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCT---TEEEEECSCCCH
T ss_pred -------------------------CcccC-HHHHHhCCCEEEEeCCChHHHHHHHHHHHhhCCC---CCEEEECCCCCH
Confidence 11122 4566788999999999775 89999988887776 678887776532
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchh--hhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIA--SEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a--~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
.. .+.+.+.++.. .+.++..|... .....+..+ +..+++++..+.++++| ..+++++..+|...
T Consensus 95 ~~----------~~~l~~~~~~~--g~~~~~~p~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ll-~~g~~~~~~~~~~~ 160 (289)
T 2cvz_A 95 EA----------SRRLAERLREK--GVTYLDAPVSGGTSGAEAGTLT-VMLGGPEEAVERVRPFL-AYAKKVVHVGPVGA 160 (289)
T ss_dssp HH----------HHHHHHHHHTT--TEEEEECCEESHHHHHHHTCEE-EEEESCHHHHHHHGGGC-TTEEEEEEEESTTH
T ss_pred HH----------HHHHHHHHHHc--CCEEEEecCCCChhHHhhCCeE-EEECCCHHHHHHHHHHH-hhcCCeEEcCCCcH
Confidence 21 12344444321 12233345432 222244433 33466777889999999 99998877777655
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhcccCchhHHHHHHHh
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNAWYGQELA 358 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~~~G~~l~ 358 (465)
..|.+..-|. ...++..++.|+..++++.|.+++++... ..++.- +...+++..+..+.
T Consensus 161 ~~~~k~~~n~------------------~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~--s~~~~~~~~~~~l~ 220 (289)
T 2cvz_A 161 GHAVKAINNA------------------LLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGR--SNATENLIPQRVLT 220 (289)
T ss_dssp HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTC--BHHHHHTHHHHTTT
T ss_pred HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCC--CHHHHHhccchhhc
Confidence 6665554443 23567789999999999999998776542 111110 00011111001111
Q ss_pred cCCChhhHhHhhcCCcccch-HHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 359 KGRLTLDLGDSIKGKGMIQG-ISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~vEG-~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
+.. ..+.+++. ....+.++++++++|+ + +|+++++|+++.
T Consensus 221 ~~~---------~~g~~~~~~~kd~~~~~~~a~~~gv--------------~-~p~~~~v~~~~~ 261 (289)
T 2cvz_A 221 RAF---------PKTFALGLLVKDLGIAMGVLDGEKA--------------P-SPLLRLAREVYE 261 (289)
T ss_dssp SCC---------CCSSBHHHHHHHHHHHHHHHTTTCC--------------C-CHHHHHHHHHHH
T ss_pred CCC---------CCCcChHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHH
Confidence 111 11123332 2345689999999995 6 899999999986
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=158.32 Aligned_cols=261 Identities=12% Similarity=0.055 Sum_probs=164.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|.||+.+|..|+++ | ++|++|+|+++.++.++ +
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~~~---------~----------------------- 56 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEW-P-----GGVTVYDIRIEAMTPLA---------E----------------------- 56 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTS-T-----TCEEEECSSTTTSHHHH---------H-----------------------
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHHHH---------H-----------------------
Confidence 47999999999999999999998 7 89999999987655311 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.++.++++++++++ +|+||+|||. +.++++++.+.+.+++ +++||.++.+ .
T Consensus 57 -----------------------~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~~l~~---g~ivv~~st~-~ 108 (296)
T 3qha_A 57 -----------------------AGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAGHAKP---GTVIAIHSTI-S 108 (296)
T ss_dssp -----------------------TTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHTTCCT---TCEEEECSCC-C
T ss_pred -----------------------CCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHHhcCC---CCEEEEeCCC-C
Confidence 02456788889888 9999999995 6889999999888876 6778777643 3
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhh--hccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEI--YNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT 279 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev--~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g 279 (465)
+.+ . +.+.+.+... .+.++..|-+.... ..+..+ ++++++++..++++++|+..+.+++...+.-.
T Consensus 109 ~~~-----~----~~~~~~~~~~--g~~~~~~pv~g~~~~a~~g~l~-~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~ 176 (296)
T 3qha_A 109 DTT-----A----VELARDLKAR--DIHIVDAPVSGGAAAAARGELA-TMVGADREVYERIKPAFKHWAAVVIHAGEPGA 176 (296)
T ss_dssp HHH-----H----HHHHHHHGGG--TCEEEECCEESCHHHHHHTCEE-EEEECCHHHHHHHHHHHHHHEEEEEEEESTTH
T ss_pred HHH-----H----HHHHHHHHHc--CCEEEeCCCcCCHHHHhcCCcc-EEecCCHHHHHHHHHHHHHHcCCeEEcCChhH
Confidence 321 1 2233322110 11223333322211 134332 45567788889999999988888877777544
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc----CchhHHHH
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL----KGRNAWYG 354 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~----~sRN~~~G 354 (465)
.++.|.+-|. ....+..+++|+..+++++|.+++++.++ ...|.+.++. ..| +
T Consensus 177 a~~~Kl~~N~------------------~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~----~ 234 (296)
T 3qha_A 177 GTRMKLARNM------------------LTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD----N 234 (296)
T ss_dssp HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS----S
T ss_pred HHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh----c
Confidence 5555554443 22445677899999999999999888321 1122222211 111 1
Q ss_pred HHHhcCCChh-hHhHhhcCCcc-cchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 355 QELAKGRLTL-DLGDSIKGKGM-IQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 355 ~~l~~g~~~~-~~~~~~~~~~~-vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
..+.++.... .+.. .. --.......+.+++++.|+ + +|+++.+++++..
T Consensus 235 ~~~~~~~~~~f~~~~-----~~~~~~~KD~~~~~~~a~~~g~--------------~-~p~~~~~~~~~~~ 285 (296)
T 3qha_A 235 MKDLEPDNFLYQPFL-----HTRGLGEKDLSLALALGEAVSV--------------D-LPLARLAYEGLAA 285 (296)
T ss_dssp CSCCCTTSTTHHHHH-----HHHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHH
T ss_pred hhhhhcCCCCCchhh-----hhhHHHHHHHHHHHHHHHHcCC--------------C-ChHHHHHHHHHHH
Confidence 1111110000 0000 00 1123445678899999994 6 8999999998853
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=147.76 Aligned_cols=174 Identities=14% Similarity=0.179 Sum_probs=131.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|+||+++|..|+++ | ++|++|+|+++
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~-g-----~~V~~~~~~~~-------------------------------------- 53 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIA-G-----HEVTYYGSKDQ-------------------------------------- 53 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECTTCC--------------------------------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHH--------------------------------------
Confidence 357999999999999999999998 7 89999977531
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+++++|+||+|||++.++++++++.++++ +++++++++|++
T Consensus 54 -----------------------------------~~~~aD~vi~av~~~~~~~v~~~l~~~~~----~~~vi~~~~g~~ 94 (209)
T 2raf_A 54 -----------------------------------ATTLGEIVIMAVPYPALAALAKQYATQLK----GKIVVDITNPLN 94 (209)
T ss_dssp -----------------------------------CSSCCSEEEECSCHHHHHHHHHHTHHHHT----TSEEEECCCCBC
T ss_pred -----------------------------------HhccCCEEEEcCCcHHHHHHHHHHHHhcC----CCEEEEECCCCC
Confidence 23568999999999999999999988776 478999999997
Q ss_pred -ccccc--cccCCCHHHHHHhHhCCCCccEE----EEeCCchhhhhhcc-CceEEEEe-CChhHHHHHHHHHcCCCCeEE
Q 012349 202 -AELEA--VPRIITPTQMINRATGVPIENIL----YLGGPNIASEIYNK-EYANARIC-GAEKWRKPLAKFLRRPHFTVW 272 (465)
Q Consensus 202 -~~~~~--~~~~~~~se~I~e~lg~~~~~i~----vlsGP~~a~ev~~g-~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~ 272 (465)
.+... .++...+++.+++.++. .++. .++||+++.+...+ .++.+.++ .+++..+.++++|+..|++++
T Consensus 95 ~~~~~~l~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~~~~~~~~v~~ll~~~G~~~~ 172 (209)
T 2raf_A 95 FDTWDDLVVPADSSAAQELQQQLPD--SQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDSAKQRFTRALADSPLEVK 172 (209)
T ss_dssp TTTSSSBSSCTTCCHHHHHHHHCTT--SEEEECSTTSCHHHHHHSEETTTEECEEEEEESCHHHHHHHHHHTTTSSCEEE
T ss_pred ccccccccCCCCCcHHHHHHHHCCC--CcEEEeeecccHhhccccccCCCCCceeEEcCCCHHHHHHHHHHHHHcCCceE
Confidence 22000 00234567888887752 2221 12389999877655 33333444 455778999999999999999
Q ss_pred ecCChHHHHHHHHHHHHHHHHHHhhhcccCC
Q 012349 273 DNGDLVTHEVMGGLKNVYAIGAGMVAALTNE 303 (465)
Q Consensus 273 ~s~Di~gve~~galKNviAia~Gi~~gl~~g 303 (465)
..+|+ +.+.++||+.++.+|+..+.++|
T Consensus 173 ~~~~i---~~a~~~K~i~~l~~~~~~~~g~g 200 (209)
T 2raf_A 173 DAGKL---KRARELEAMGFMQMTLAASEQIG 200 (209)
T ss_dssp EEESG---GGHHHHHHHHHHHHHHHHTTSSC
T ss_pred eCCCH---hHHHHhcchHHHHHHHHHHcCCC
Confidence 98884 45888999999999999988876
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-16 Score=162.72 Aligned_cols=226 Identities=14% Similarity=0.101 Sum_probs=154.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++|||+|||+|+||+.+|..|+++ | ++++|++|++++++++.++ +++ .+.+.+++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~-g---~g~~V~~~D~~~~~v~~l~---------~g~--------~~i~e~gl~--- 63 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHK-C---PHITVTVVDMNTAKIAEWN---------SDK--------LPIYEPGLD--- 63 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHH-C---TTSEEEEECSCHHHHHHHT---------SSS--------CSSCCTTHH---
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEEECCHHHHHHHH---------CCC--------CCcCCCCHH---
Confidence 358999999999999999999987 3 1279999999998776533 221 222333221
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc---------------hHHHHHHHHHHhhhc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST---------------ETKEVFEEISRYWKE 186 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~---------------~l~~vl~~l~~~l~~ 186 (465)
|++..+. ..++.+++|+.+++.++|+||+|||+. ++.++++.|.+++++
T Consensus 64 --------~~~~~~~--------~~~l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~ 127 (481)
T 2o3j_A 64 --------EIVFAAR--------GRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGG 127 (481)
T ss_dssp --------HHHHHHB--------TTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCS
T ss_pred --------HHHHHhh--------cCCEEEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCC
Confidence 1111100 014778899888889999999998764 389999999998886
Q ss_pred cCCCCEEEEeeccccccccccccCCCHHHHHHhHhCC-CCccEEEEeCCchhhhhhc----cCceEEEEeCCh-----hH
Q 012349 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGV-PIENILYLGGPNIASEIYN----KEYANARICGAE-----KW 256 (465)
Q Consensus 187 ~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~-~~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~~-----~~ 256 (465)
+++||..+ ++.+.+ ...+.+.+.+..+. ....+.+.++|.++.+... ..+..+++++.+ +.
T Consensus 128 ---g~iVV~~S-Tv~~gt-----~~~l~~~l~~~~~~~~~~d~~v~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a 198 (481)
T 2o3j_A 128 ---PKIVVEKS-TVPVKA-----AESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQA 198 (481)
T ss_dssp ---CEEEEECS-CCCTTH-----HHHHHHHHHHHTC----CCEEEEECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHH
T ss_pred ---CCEEEECC-CCCCCH-----HHHHHHHHHHhhCcCcCCceEEEeCcccccccchhhcccCCCEEEEEecCchhhHHH
Confidence 56666444 555542 22344555442221 1123568899998876542 223334554432 45
Q ss_pred HHHHHHHHcCCCC-eEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhc
Q 012349 257 RKPLAKFLRRPHF-TVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 334 (465)
Q Consensus 257 ~~~l~~ll~~~g~-~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~ 334 (465)
.+.++++|+..+. .++...|+...||.|.+-|.+ + ++....++|+..+++++|.+++++.
T Consensus 199 ~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~-----------------~-a~~ia~~nE~~~la~~~Gid~~~v~ 259 (481)
T 2o3j_A 199 VAELVRIYENWVPRNRIITTNTWSSELSKLVANAF-----------------L-AQRISSINSISAVCEATGAEISEVA 259 (481)
T ss_dssp HHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 6889999998874 778888999999999888862 2 4556789999999999999876654
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-15 Score=148.58 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=119.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||++++..|+++ | +.+ .+|++|+|+++.++++ .+. |
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~-g-~~~-~~V~v~dr~~~~~~~l---------~~~------------~--------- 49 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIAN-G-YDP-NRICVTNRSLDKLDFF---------KEK------------C--------- 49 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHT-T-CCG-GGEEEECSSSHHHHHH---------HHT------------T---------
T ss_pred CCEEEEEcccHHHHHHHHHHHHC-C-CCC-CeEEEEeCCHHHHHHH---------HHH------------c---------
Confidence 47999999999999999999998 7 110 2899999998755431 100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh-hhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~-l~~~~~~~ivIs~~kGi~ 201 (465)
++.++++..+++.++|+||+|||++.++++++++.++ +++ +++|||+++|+.
T Consensus 50 ------------------------gi~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~l~~---~~iiiS~~agi~ 102 (280)
T 3tri_A 50 ------------------------GVHTTQDNRQGALNADVVVLAVKPHQIKMVCEELKDILSET---KILVISLAVGVT 102 (280)
T ss_dssp ------------------------CCEEESCHHHHHSSCSEEEECSCGGGHHHHHHHHHHHHHTT---TCEEEECCTTCC
T ss_pred ------------------------CCEEeCChHHHHhcCCeEEEEeCHHHHHHHHHHHHhhccCC---CeEEEEecCCCC
Confidence 3456778888899999999999999999999999998 876 679999999997
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEe
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
.+ .+++.++.+ .+ .+...||++..+..+... ++.+ .+++..+.++++|+..|..+++
T Consensus 103 ~~------------~l~~~l~~~-~~-vvr~mPn~p~~v~~g~~~-l~~~~~~~~~~~~~v~~l~~~iG~~~~v 161 (280)
T 3tri_A 103 TP------------LIEKWLGKA-SR-IVRAMPNTPSSVRAGATG-LFANETVDKDQKNLAESIMRAVGLVIWV 161 (280)
T ss_dssp HH------------HHHHHHTCC-SS-EEEEECCGGGGGTCEEEE-EECCTTSCHHHHHHHHHHHGGGEEEEEC
T ss_pred HH------------HHHHHcCCC-Ce-EEEEecCChHHhcCccEE-EEeCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 64 467777642 23 467889999888776422 2222 2567889999999999976665
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-16 Score=163.86 Aligned_cols=278 Identities=11% Similarity=0.024 Sum_probs=175.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ | ++|.+|+|+++.++.+. +. .++
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~-G-----~~V~v~dr~~~~~~~l~---------~~-------------~~~------ 50 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESR-G-----YTVAIYNRTTSKTEEVF---------KE-------------HQD------ 50 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHH---------HH-------------TTT------
T ss_pred CCcEEEEeeHHHHHHHHHHHHhC-C-----CEEEEEcCCHHHHHHHH---------Hh-------------CcC------
Confidence 37899999999999999999998 7 89999999987655421 10 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~---aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
.++..++++++++.. +|+||++||+ +.++++++++.+++++ +++||++++
T Consensus 51 -----------------------~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~vl~~l~~~l~~---g~iiId~s~ 104 (474)
T 2iz1_A 51 -----------------------KNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDI---GDILIDGGN 104 (474)
T ss_dssp -----------------------SCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHHHHHHGGGCCT---TCEEEECSC
T ss_pred -----------------------CCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHHHHHHHhhCCC---CCEEEECCC
Confidence 035567788887766 9999999999 5899999999998876 688999999
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhh--hhccCceEEEEeCChhHHHHHHHHHcCCCCe------
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--IYNKEYANARICGAEKWRKPLAKFLRRPHFT------ 270 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~e--v~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~------ 270 (465)
|....+ +.+.+.+... .+.++.+|....+ ...|. + ++.+++++..+.++.+|+..+.+
T Consensus 105 ~~~~~~----------~~l~~~l~~~--g~~~v~~pv~gg~~~a~~g~-~-i~~gg~~~~~~~v~~ll~~~g~~~~~dge 170 (474)
T 2iz1_A 105 THFPDT----------MRRNAELADS--GINFIGTGVSGGEKGALLGP-S-MMPGGQKEAYDLVAPIFEQIAAKAPQDGK 170 (474)
T ss_dssp CCHHHH----------HHHHHHTTTS--SCEEEEEEECSHHHHHHHCC-C-EEEEECHHHHHHHHHHHHHHSCBCTTTCC
T ss_pred CCHHHH----------HHHHHHHHHC--CCeEECCCCCCChhhhccCC-e-EEecCCHHHHHHHHHHHHHHhcccccCCC
Confidence 976531 2344444321 1223334443222 22343 3 34566777888899999876655
Q ss_pred --EEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHH-hCCCcchhccC------c-hhh
Q 012349 271 --VWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLAGP------L-LAD 340 (465)
Q Consensus 271 --v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a-~G~~~~t~~g~------g-lgD 340 (465)
+....+.-...|.+..-| ....++.+++.|+..++++ +|.+++++.++ | +++
T Consensus 171 ~~~~~~g~~g~g~~~Kl~~N------------------~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s 232 (474)
T 2iz1_A 171 PCVAYMGANGAGHYVKMVHN------------------GIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDS 232 (474)
T ss_dssp BSBCCCBSTTHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCB
T ss_pred ceEEEECCccHHHHHHHHHh------------------HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccc
Confidence 223333211223333333 2335677899999999999 89988776541 3 566
Q ss_pred hhhccc----CchhHHHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHH
Q 012349 341 TYVTLL----KGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKM 416 (465)
Q Consensus 341 l~~T~~----~sRN~~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~ 416 (465)
+..+|+ .+||+..|. ...+.+.+. .++.-.| +.+.++++++|+ + +|++..
T Consensus 233 ~l~~~~~~~l~~~d~~~g~-----~~vd~i~D~--~~~k~tG----~~~~~~A~~~gv--------------~-~P~~~~ 286 (474)
T 2iz1_A 233 YLIEITKEVLKRKDDEGEG-----YIVDKILDK--AGNKGTG----KWTSESALDLGV--------------P-LPLITE 286 (474)
T ss_dssp HHHHHHHHHTTCBCSSSSS-----BGGGGBCSC--CCCCSHH----HHHHHHHHHHTC--------------C-CHHHHH
T ss_pred cHHHhhhhHhhcCCCCCCh-----hHHHHHHHh--hcccchH----HHHHHHHHHcCC--------------C-CchHHH
Confidence 666663 456664331 112111110 0112233 467788999994 6 799988
Q ss_pred H--HHHHhcCCCHHHHHHHHHhcc
Q 012349 417 L--YKILIMRESPIQAILEALRDE 438 (465)
Q Consensus 417 v--y~il~~~~~~~~~~~~ll~~~ 438 (465)
. ++++...++.......++..+
T Consensus 287 av~ar~~s~~k~~r~~~~~~~~g~ 310 (474)
T 2iz1_A 287 SVFARYISTYKDERVKASKVLSGP 310 (474)
T ss_dssp HHHHHHHHHCHHHHHHHHHHCCCC
T ss_pred HHHHHHhhhhhhhhHHhhhccCCC
Confidence 4 777776544444444444433
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-15 Score=148.81 Aligned_cols=255 Identities=9% Similarity=0.042 Sum_probs=158.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCc--hhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG--RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~--~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
.+|||+|||+|.||+++|..|+++ | + +|++|+|++ +..+. +.+
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~-G-----~~~V~~~dr~~~~~~~~~---------~~~------------------- 68 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQA-G-----AIDMAAYDAASAESWRPR---------AEE------------------- 68 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHH-S-----CCEEEEECSSCHHHHHHH---------HHH-------------------
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-C-----CCeEEEEcCCCCHHHHHH---------HHH-------------------
Confidence 468999999999999999999999 8 8 999999973 32221 100
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
.++..+++++++++++|+||+|||++...++++++.+.+++ +++||.++
T Consensus 69 ---------------------------~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~l~~~l~~---~~ivvd~s- 117 (312)
T 3qsg_A 69 ---------------------------LGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQAGPHLCE---GALYADFT- 117 (312)
T ss_dssp ---------------------------TTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHHHGGGCCT---TCEEEECC-
T ss_pred ---------------------------CCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHhhHhhcCC---CCEEEEcC-
Confidence 02456678888899999999999999988899999988876 67777666
Q ss_pred cccccccccccCCCHHHHHHhHh-CCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCC-
Q 012349 199 GVEAELEAVPRIITPTQMINRAT-GVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGD- 276 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~l-g~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~D- 276 (465)
++.+.+ ...+.+.+.+.. |..... +-++||..+. .+..+ ++++++++ +.++.+|+..+.++++..+
T Consensus 118 t~~~~~-----~~~~~~~~~~~~~g~~~vd-~pv~g~~~~~---~g~l~-i~vgg~~~--~~~~~ll~~~g~~~~~~g~~ 185 (312)
T 3qsg_A 118 SCSPAV-----KRAIGDVISRHRPSAQYAA-VAVMSAVKPH---GHRVP-LVVDGDGA--RRFQAAFTLYGCRIEVLDGE 185 (312)
T ss_dssp CCCHHH-----HHHHHHHHHHHCTTCEEEE-EEECSCSTTT---GGGSE-EEEESTTH--HHHHHHHHTTTCEEEECCSS
T ss_pred CCCHHH-----HHHHHHHHHhhcCCCeEEe-ccccCCchhh---cCCEE-EEecCChH--HHHHHHHHHhCCCeEEcCCC
Confidence 444431 122233333321 321111 2356654443 34433 34555544 8899999999999888776
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcccCchhH-HHHH
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNA-WYGQ 355 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~-~~G~ 355 (465)
+-..++.+.+-|.+. .....++.|+..+++++|.+++.+.. +.....|+.+ .++.
T Consensus 186 ~g~a~~~Kl~~n~~~------------------~~~~~~~~Ea~~la~~~Gld~~~~~~------l~~~~~~~~~~~~~~ 241 (312)
T 3qsg_A 186 VGGAALLKMCRSAVL------------------KGLEALFLEALAAAEKMGLADRVLAS------LDASFPEHHLRDLAL 241 (312)
T ss_dssp TTHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHTTTCHHHHHHH------HHHHSGGGTHHHHHH
T ss_pred CCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCHHHHHH------HHhcCCchhHHHhhh
Confidence 655666666555321 22335678989999999998743321 1111112211 1121
Q ss_pred HHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 356 ELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 356 ~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
.+..+. ..- +..+ ....+.+.+++++.|+ + +|+++.+++++.
T Consensus 242 ~~~~~~----~~~----g~~~--~KDl~~~~~~a~~~g~--------------~-~pl~~~~~~~~~ 283 (312)
T 3qsg_A 242 YLVERN----LEH----ADRR--AHELGEVAATLCSVGV--------------E-PLVAEAGYRRLT 283 (312)
T ss_dssp HHHHHH----HHH----HHHH--HHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred HhhcCC----CCc----ccch--HHHHHHHHHHHHHcCC--------------C-cHHHHHHHHHHH
Confidence 111100 000 0001 2444578889999995 6 799999988775
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=150.98 Aligned_cols=164 Identities=14% Similarity=0.137 Sum_probs=121.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch--hhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~--~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+|||+|||+|+||++||..|+++ |... .++|++|+|+++ .++. +++.
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~-G~~~-~~~V~v~~r~~~~~~~~~---------l~~~-------------------- 70 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAA-GVLA-AHKIMASSPDMDLATVSA---------LRKM-------------------- 70 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHT-TSSC-GGGEEEECSCTTSHHHHH---------HHHH--------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCCC-cceEEEECCCccHHHHHH---------HHHc--------------------
Confidence 47999999999999999999988 6322 168999999874 3332 1100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
++.++++..+++.++|+||+|||++.++++++++.+.+.+ +++||++++|+
T Consensus 71 --------------------------G~~~~~~~~e~~~~aDvVilav~~~~~~~vl~~l~~~l~~---~~ivvs~s~gi 121 (322)
T 2izz_A 71 --------------------------GVKLTPHNKETVQHSDVLFLAVKPHIIPFILDEIGADIED---RHIVVSCAAGV 121 (322)
T ss_dssp --------------------------TCEEESCHHHHHHHCSEEEECSCGGGHHHHHHHHGGGCCT---TCEEEECCTTC
T ss_pred --------------------------CCEEeCChHHHhccCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEeCCCC
Confidence 2345667778888999999999999999999999988876 68999999999
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCC---hhHHHHHHHHHcCCCCeEEecCCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGA---EKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~---~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
..+. +.+.+.+.++. . ..+...|+++.++..+. + +..+++ ++..+.++++|+..|+++++.+|+
T Consensus 122 ~~~~--------l~~~l~~~~~~--~-~vv~~~p~~p~~~~~g~-~-v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~ 188 (322)
T 2izz_A 122 TISS--------IEKKLSAFRPA--P-RVIRCMTNTPVVVREGA-T-VYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDL 188 (322)
T ss_dssp CHHH--------HHHHHHTTSSC--C-EEEEEECCGGGGGTCEE-E-EEEECTTCCHHHHHHHHHHHHTTEEEEECCGGG
T ss_pred CHHH--------HHHHHhhcCCC--C-eEEEEeCCcHHHHcCCe-E-EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHH
Confidence 7641 23334333321 2 35678899998887664 2 233333 577889999999999999888776
Q ss_pred HH
Q 012349 278 VT 279 (465)
Q Consensus 278 ~g 279 (465)
..
T Consensus 189 ~~ 190 (322)
T 2izz_A 189 ID 190 (322)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-15 Score=144.62 Aligned_cols=161 Identities=17% Similarity=0.099 Sum_probs=118.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||++++..|+++ |.+.+ .+|++|+|++++++++ .+. .
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~-g~~~~-~~V~~~~r~~~~~~~~---------~~~----------------~----- 49 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINK-NIVSS-NQIICSDLNTANLKNA---------SEK----------------Y----- 49 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-TSSCG-GGEEEECSCHHHHHHH---------HHH----------------H-----
T ss_pred CCeEEEECccHHHHHHHHHHHhC-CCCCC-CeEEEEeCCHHHHHHH---------HHH----------------h-----
Confidence 47999999999999999999998 71111 2899999998755431 100 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
++..++++++++.++|+||+|||++.++++++++.+++++ ++++||+++|+..
T Consensus 50 ------------------------g~~~~~~~~e~~~~aDvVilav~~~~~~~v~~~l~~~l~~---~~~vvs~~~gi~~ 102 (247)
T 3gt0_A 50 ------------------------GLTTTTDNNEVAKNADILILSIKPDLYASIINEIKEIIKN---DAIIVTIAAGKSI 102 (247)
T ss_dssp ------------------------CCEECSCHHHHHHHCSEEEECSCTTTHHHHC---CCSSCT---TCEEEECSCCSCH
T ss_pred ------------------------CCEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHHHhhcCC---CCEEEEecCCCCH
Confidence 2345678888889999999999999999999999988876 6789999999876
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
+ .+++.++.. . ..+...|+++..+..|.. .++.+ .+++..+.++++|+..|..+++.++.
T Consensus 103 ~------------~l~~~~~~~-~-~~v~~~p~~p~~~~~g~~-~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~e~~ 164 (247)
T 3gt0_A 103 E------------STENAFNKK-V-KVVRVMPNTPALVGEGMS-ALCPNEMVTEKDLEDVLNIFNSFGQTEIVSEKL 164 (247)
T ss_dssp H------------HHHHHHCSC-C-EEEEEECCGGGGGTCEEE-EEEECTTCCHHHHHHHHHHHGGGEEEEECCGGG
T ss_pred H------------HHHHHhCCC-C-cEEEEeCChHHHHcCceE-EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHH
Confidence 4 466767532 2 246678999887776642 22332 46678899999999999877776554
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-15 Score=143.02 Aligned_cols=239 Identities=13% Similarity=0.145 Sum_probs=148.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec--CchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r--~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
|||+|||+|+||+++|..|+++ | ++|++|+| +++.++. +.+.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~-g-----~~V~~~~~~~~~~~~~~---------~~~~--------------------- 44 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR-G-----VEVVTSLEGRSPSTIER---------ARTV--------------------- 44 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-T-----CEEEECCTTCCHHHHHH---------HHHH---------------------
T ss_pred CeEEEEechHHHHHHHHHHHHC-C-----CeEEEeCCccCHHHHHH---------HHHC---------------------
Confidence 6999999999999999999998 7 89999987 3332221 1000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
++. +++++++.++|+||+|||++.....+.++.+.++ + +++++ +++.
T Consensus 45 -------------------------g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~~~----~-~vi~~-s~~~ 91 (264)
T 1i36_A 45 -------------------------GVT--ETSEEDVYSCPVVISAVTPGVALGAARRAGRHVR----G-IYVDI-NNIS 91 (264)
T ss_dssp -------------------------TCE--ECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTCC----S-EEEEC-SCCC
T ss_pred -------------------------CCc--CCHHHHHhcCCEEEEECCCHHHHHHHHHHHHhcC----c-EEEEc-cCCC
Confidence 122 4566778899999999999865555666666543 4 56655 4665
Q ss_pred ccccccccCCCHHHHHHhHhCCCC-ccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecC-ChHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPI-ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG-DLVT 279 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~-~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~-Di~g 279 (465)
+.+ .+.+.+.++... ....+..+|..+. .+.+ +++++++. +.+++ |+..|.+++... ++-.
T Consensus 92 ~~~---------~~~l~~~~~~~g~~~~~v~~~~~~~~---~g~~--~~~~g~~~--~~~~~-l~~~g~~~~~~~~~~g~ 154 (264)
T 1i36_A 92 PET---------VRMASSLIEKGGFVDAAIMGSVRRKG---ADIR--IIASGRDA--EEFMK-LNRYGLNIEVRGREPGD 154 (264)
T ss_dssp HHH---------HHHHHHHCSSSEEEEEEECSCHHHHG---GGCE--EEEESTTH--HHHHG-GGGGTCEEEECSSSTTH
T ss_pred HHH---------HHHHHHHHhhCCeeeeeeeCCccccc---cCCe--EEecCCcH--HHhhh-HHHcCCeeEECCCCcCH
Confidence 431 134566664311 0122344444333 3443 34455443 78888 999998865544 4555
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC--chh-hhhhccc--CchhHHHH
Q 012349 280 HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP--LLA-DTYVTLL--KGRNAWYG 354 (465)
Q Consensus 280 ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~--glg-Dl~~T~~--~sRN~~~G 354 (465)
..|.+..-|.+. ..+..++.|+..+++++|.+++.+..+ ..| ++..++. .+||+..|
T Consensus 155 ~~~~kl~~n~~~------------------~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 216 (264)
T 1i36_A 155 ASAIKMLRSSYT------------------KGVSALLWETLTAAHRLGLEEDVLEMLEYTEGNDFRESAISRLKSSCIHA 216 (264)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSCSSTHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHhcCccHHHHHHHHhcCCCCcc
Confidence 667665555432 245678999999999999987533211 111 2222211 12222211
Q ss_pred HHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 355 QELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 355 ~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
. + ++...+.+.++++++ + + +|+++++|+++..
T Consensus 217 ~-------------------~--~~~~~~~~~~~a~~~-v--------------~-~p~~~~v~~~~~~ 248 (264)
T 1i36_A 217 R-------------------R--RYEEMKEVQDMLAEV-I--------------D-PVMPTCIIRIFDK 248 (264)
T ss_dssp H-------------------H--HHHHHHHHHHHHHTT-S--------------C-CSHHHHHHHHHHH
T ss_pred h-------------------h--hHHHHHHHHHHHHHh-c--------------C-chHHHHHHHHHHH
Confidence 1 1 456667788999998 8 5 7999999999874
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=156.69 Aligned_cols=210 Identities=14% Similarity=0.070 Sum_probs=146.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+.+|..|++ | ++|++|+|++++++.++. ++ .+.+-++..
T Consensus 1 MkI~VIG~G~vG~~~A~~La~--G-----~~V~~~d~~~~~~~~l~~---------~~--------~~i~e~~l~----- 51 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL--Q-----NEVTIVDILPSKVDKINN---------GL--------SPIQDEYIE----- 51 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT--T-----SEEEEECSCHHHHHHHHT---------TC--------CSSCCHHHH-----
T ss_pred CEEEEECCCHHHHHHHHHHhC--C-----CEEEEEECCHHHHHHHHc---------CC--------CCcCCCCHH-----
Confidence 699999999999999999986 5 899999999887765332 21 011111110
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-----------hHHHHHHHHHHhhhccCCCCE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITVPV 192 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-----------~l~~vl~~l~~~l~~~~~~~i 192 (465)
++++.. ..++.+++++.+++.++|+||+|||+. +++++++.+.+ +.+ +++
T Consensus 52 ------~~~~~~---------~~~l~~t~~~~~~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~---~~i 112 (402)
T 1dlj_A 52 ------YYLKSK---------QLSIKATLDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNS---HAT 112 (402)
T ss_dssp ------HHHHHS---------CCCEEEESCHHHHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCS---SCE
T ss_pred ------HHHHhc---------cCcEEEeCCHHHHhcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCC---CCE
Confidence 111110 014678889888889999999999987 69999999998 776 677
Q ss_pred EEE-eeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc----cCceEEEEeCCh-------hHHHHH
Q 012349 193 IIS-LAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAE-------KWRKPL 260 (465)
Q Consensus 193 vIs-~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~~-------~~~~~l 260 (465)
||. .+++.... +.+.+.++.. .+.++|.+..+... ..+..+++++.+ +.++.+
T Consensus 113 VV~~ST~~~g~~-----------~~l~~~~~~~----~v~~~Pe~~~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~ 177 (402)
T 1dlj_A 113 LIIKSTIPIGFI-----------TEMRQKFQTD----RIIFSPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKF 177 (402)
T ss_dssp EEECSCCCTTHH-----------HHHHHHTTCS----CEEECCCCCCTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred EEEeCCCCccHH-----------HHHHHHhCCC----eEEECCccccCcchhhcccCCCEEEEeCCCcccchhHHHHHHH
Confidence 665 56555432 4566666532 35688887765431 112335555544 667889
Q ss_pred HHHHcCCCCe---EEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhc
Q 012349 261 AKFLRRPHFT---VWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 334 (465)
Q Consensus 261 ~~ll~~~g~~---v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~ 334 (465)
.++|...+++ ++...|+...||.|.+.|.+ + ++....++|+..+|+++|.++..+.
T Consensus 178 ~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~-----------------~-a~~ia~~nE~~~l~~~~Gid~~~v~ 236 (402)
T 1dlj_A 178 ALLLKSAAKKNNVPVLIMGASEAEAVKLFANTY-----------------L-ALRVAYFNELDTYAESRKLNSHMII 236 (402)
T ss_dssp HHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhhhccCCceEEecChHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999765654 56778999999999999964 1 2334678999999999999876554
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-15 Score=144.45 Aligned_cols=250 Identities=14% Similarity=0.146 Sum_probs=156.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+++ |. ++|++|+|+++.++.+ .+. +
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~-g~----~~v~~~~r~~~~~~~~---------~~~------------~---------- 44 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ-GG----YRIYIANRGAEKRERL---------EKE------------L---------- 44 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CS----CEEEEECSSHHHHHHH---------HHH------------T----------
T ss_pred CEEEEECchHHHHHHHHHHHHC-CC----CeEEEECCCHHHHHHH---------HHh------------c----------
Confidence 6999999999999999999988 51 6899999998655431 100 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
++.+++++.+++ ++|+||+|||++.++++++++.+ + +++|+++++|+.++
T Consensus 45 -----------------------g~~~~~~~~~~~-~~D~vi~~v~~~~~~~v~~~l~~--~----~~ivv~~~~g~~~~ 94 (263)
T 1yqg_A 45 -----------------------GVETSATLPELH-SDDVLILAVKPQDMEAACKNIRT--N----GALVLSVAAGLSVG 94 (263)
T ss_dssp -----------------------CCEEESSCCCCC-TTSEEEECSCHHHHHHHHTTCCC--T----TCEEEECCTTCCHH
T ss_pred -----------------------CCEEeCCHHHHh-cCCEEEEEeCchhHHHHHHHhcc--C----CCEEEEecCCCCHH
Confidence 123445555667 89999999999999999887765 2 47899999998763
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEec-CChHHH
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN-GDLVTH 280 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~s-~Di~gv 280 (465)
.+++.++.. .++ +...|+++..+..|... +..+. +++..+.++++|+..|+++++. +|
T Consensus 95 ------------~l~~~~~~~-~~~-v~~~~~~~~~~~~g~~~-i~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~---- 155 (263)
T 1yqg_A 95 ------------TLSRYLGGT-RRI-VRVMPNTPGKIGLGVSG-MYAEAEVSETDRRIADRIMKSVGLTVWLDDEE---- 155 (263)
T ss_dssp ------------HHHHHTTSC-CCE-EEEECCGGGGGTCEEEE-EECCTTSCHHHHHHHHHHHHTTEEEEECSSTT----
T ss_pred ------------HHHHHcCCC-CcE-EEEcCCHHHHHcCceEE-EEcCCCCCHHHHHHHHHHHHhCCCEEEeCChh----
Confidence 466666532 233 33479988877776532 23333 5677899999999999988777 65
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcccCchhHHHHHHHh-c
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLKGRNAWYGQELA-K 359 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~~sRN~~~G~~l~-~ 359 (465)
.+.++.|+. | .+ +.. ...+..++.|+ +.+.|.+++++..+ .... . ...++.+. .
T Consensus 156 ----~~~~~~al~-g------~~-~~~-~~~~~~~l~e~---~~~~G~~~~~~~~~-----~~~~--~--~~~~~~~~~~ 210 (263)
T 1yqg_A 156 ----KMHGITGIS-G------SG-PAY-VFYLLDALQNA---AIRQGFDMAEARAL-----SLAT--F--KGAVALAEQT 210 (263)
T ss_dssp ----HHHHHHHHT-T------SH-HHH-HHHHHHHHHHH---HHHTTCCHHHHHHH-----HHHH--H--HHHHHHHHHH
T ss_pred ----hccHHHHHH-c------cH-HHH-HHHHHHHHHHH---HHHcCCCHHHHHHH-----HHHH--H--HHHHHHHHhc
Confidence 222222321 1 11 111 13344555554 77888887665431 1110 0 00111111 3
Q ss_pred CCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 360 GRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 360 g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
|.+...+.+.. +-.|..+...+..+ ++.| ++ .|+.+++++.+..
T Consensus 211 ~~~~~~~~~~~----~~~~~~~~~~l~~l-~~~~--------------~~-~~~~~a~~~~~~~ 254 (263)
T 1yqg_A 211 GEDFEKLQKNV----TSKGGTTHEAVEAF-RRHR--------------VA-EAISEGVCACVRR 254 (263)
T ss_dssp CCCHHHHHHHT----CCTTSHHHHHHHHH-HHTT--------------HH-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHhc----CCCChhHHHHHHHH-HHCC--------------HH-HHHHHHHHHHHHH
Confidence 43332222221 23455554455444 7777 46 6999999998864
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=159.73 Aligned_cols=286 Identities=12% Similarity=0.015 Sum_probs=170.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..+|+|||+|+||++||..|+++ | ++|++|+|+++++++++. .. .++
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~-G-----~~V~v~dr~~~~~~~l~~--------~~-------------~~~------ 56 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADH-G-----FTVCAYNRTQSKVDHFLA--------NE-------------AKG------ 56 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSHHHHHHHH--------TT-------------TTT------
T ss_pred CCCEEEEeeHHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHc--------cc-------------ccC------
Confidence 36899999999999999999999 8 899999999986654211 00 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC---CCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD---ADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~---aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
.++..++++++++.. +|+||++||+ +.++++++++.+++++ +++||++++
T Consensus 57 -----------------------~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~---g~iIId~s~ 110 (497)
T 2p4q_A 57 -----------------------KSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEK---GDIIIDGGN 110 (497)
T ss_dssp -----------------------SSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHHHHHHHGGGCCT---TCEEEECSC
T ss_pred -----------------------CCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHHHHHHHHHhCCC---CCEEEECCC
Confidence 034556788887776 9999999999 5999999999998876 689999999
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
|....+ ..+.+.+.+ .|.......+..||..+. .|. .++++++++..+.++.+|+..+.++ |
T Consensus 111 ~~~~~~------~~l~~~l~~-~g~~~v~~pVsgg~~~a~---~G~--~im~gg~~e~~~~v~~ll~~~g~~~----d-- 172 (497)
T 2p4q_A 111 SHFPDS------NRRYEELKK-KGILFVGSGVSGGEEGAR---YGP--SLMPGGSEEAWPHIKNIFQSISAKS----D-- 172 (497)
T ss_dssp CCHHHH------HHHHHHHHH-TTCEEEEEEEESHHHHHH---HCC--EEEEEECGGGHHHHHHHHHHHSCEE----T--
T ss_pred CChhHH------HHHHHHHHH-cCCceeCCCcccChhHhh---cCC--eEEecCCHHHHHHHHHHHHHhcCcc----C--
Confidence 876531 112222322 232111123344454443 343 3455677888899999998766652 1
Q ss_pred H---HHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHH-hCCCcchhccC-c---hhhhhhcccCchh
Q 012349 279 T---HEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLAGP-L---LADTYVTLLKGRN 350 (465)
Q Consensus 279 g---ve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a-~G~~~~t~~g~-g---lgDl~~T~~~sRN 350 (465)
| +.+.|. .|....+++. .|.....+.+++.|+..++++ +|.+++++.++ . -|+ .+++..+|
T Consensus 173 Ge~~v~~vg~--------~G~g~~~Kl~-~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~--~~S~l~~~ 241 (497)
T 2p4q_A 173 GEPCCEWVGP--------AGAGHYVKMV-HNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGV--LDSFLVEI 241 (497)
T ss_dssp TEESCCCCEE--------TTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTT--TCBHHHHH
T ss_pred CCCceEEECC--------ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCc--cccHHHHH
Confidence 1 111111 1222222332 333445677999999999999 79998877542 1 122 23334555
Q ss_pred HHHHHHHhcCCCh--hhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHH-H-HHHHhcCCC
Q 012349 351 AWYGQELAKGRLT--LDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKM-L-YKILIMRES 426 (465)
Q Consensus 351 ~~~G~~l~~g~~~--~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~-v-y~il~~~~~ 426 (465)
+ +..+.++.-. ..+. .+.....--| |.+.+.+.++++|+ + +|++.. + .+++...++
T Consensus 242 ~--~~~l~~~d~~~~~~vd-~i~D~~~~Kg--tG~~~~~~A~~~Gv--------------~-~P~~~~av~ar~~s~~k~ 301 (497)
T 2p4q_A 242 T--RDILKFDDVDGKPLVE-KIMDTAGQKG--TGKWTAINALDLGM--------------P-VTLIGEAVFARCLSALKN 301 (497)
T ss_dssp H--HHHHTCBCTTSSBGGG-GSCCCCCCCS--HHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHHHHCHH
T ss_pred H--HHHHhcCCCCCccHHH-HHHHhhccch--HHHHHHHHHHHcCC--------------C-CchHHHHHHHHHhhcchh
Confidence 4 3445543210 0011 0100000011 33457788999994 6 799887 3 455554433
Q ss_pred HHHHHHHHHh
Q 012349 427 PIQAILEALR 436 (465)
Q Consensus 427 ~~~~~~~ll~ 436 (465)
.......++.
T Consensus 302 ~r~~~~~~~~ 311 (497)
T 2p4q_A 302 ERIRASKVLP 311 (497)
T ss_dssp HHHHHHHHCC
T ss_pred hHHHHhhhcC
Confidence 3333333444
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-15 Score=156.08 Aligned_cols=217 Identities=15% Similarity=0.087 Sum_probs=151.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
.|.+|||+|+||..+|..|+++ | |+|++|++++++++.+ ++++ ++.|.|+++
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~-G-----~~V~~~D~~~~kv~~L---------~~g~--------~pi~epgl~----- 63 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKH-G-----VDVLGVDINQQTIDKL---------QNGQ--------ISIEEPGLQ----- 63 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHH---------HTTC--------CSSCCTTHH-----
T ss_pred CccEEEeeCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHH---------HCCC--------CCcCCCCHH-----
Confidence 4899999999999999999999 8 9999999999888763 3332 456666542
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch------------HHHHHHHHHHhhhccCCCC
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE------------TKEVFEEISRYWKERITVP 191 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~------------l~~vl~~l~~~l~~~~~~~ 191 (465)
|++.+.... .++.+|+|+ ++||+||+|||+.. +.++++.+.+++++ ++
T Consensus 64 ------~ll~~~~~~-------g~l~~ttd~----~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~---g~ 123 (431)
T 3ojo_A 64 ------EVYEEVLSS-------GKLKVSTTP----EASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKK---GN 123 (431)
T ss_dssp ------HHHHHHHHT-------TCEEEESSC----CCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCT---TE
T ss_pred ------HHHHhhccc-------CceEEeCch----hhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCC---CC
Confidence 222211000 257888874 47999999999764 78888999998876 56
Q ss_pred EEEEeeccccccccccccCCCHHHHHHhHhCCC-CccEEEEeCCchhhhhhc----cCceEEEEeCChhHHHHHHHHHcC
Q 012349 192 VIISLAKGVEAELEAVPRIITPTQMINRATGVP-IENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRR 266 (465)
Q Consensus 192 ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~-~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~~~~~~~l~~ll~~ 266 (465)
+|| ...++++.+ .+.+++.+.+..|.. ...+.++++|.+..+... ..++.++.+.+++..+.++.+|+.
T Consensus 124 iVV-~~STV~pgt-----t~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~ 197 (431)
T 3ojo_A 124 TII-VESTIAPKT-----MDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRT 197 (431)
T ss_dssp EEE-ECSCCCTTH-----HHHTHHHHHHTTTCCBTTTEEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTT
T ss_pred EEE-EecCCChhH-----HHHHHHHHHHHcCCCcCCCeEEEECCCcCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHH
Confidence 555 555888763 333444444434421 134789999998776542 124456667778888999999987
Q ss_pred CCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcch
Q 012349 267 PHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEK 332 (465)
Q Consensus 267 ~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t 332 (465)
.+-......|+...|+.|.+-|.+ + +.-...++|+..+|+++|+++..
T Consensus 198 ~~~~~~~~~~~~~AE~~Kl~~N~~-----------------~-a~~Ia~~nE~~~l~e~~GiD~~~ 245 (431)
T 3ojo_A 198 FVQGEMIETDARTAEMSKLMENTY-----------------R-DVNIALANELTKICNNLNINVLD 245 (431)
T ss_dssp TCCSCEEEEEHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HhCCcEEeCCHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHcCCCHHH
Confidence 665455557888888888877742 1 12235678888999988886543
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-16 Score=152.41 Aligned_cols=180 Identities=16% Similarity=0.091 Sum_probs=120.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~--~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
||||+|||+|+||+++|..|+++ | + +|++|+|+++.++.+ .+. +.
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~-g-----~~~~V~~~d~~~~~~~~~---------~~~---------------g~--- 47 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS-G-----FKGKIYGYDINPESISKA---------VDL---------------GI--- 47 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT-T-----CCSEEEEECSCHHHHHHH---------HHT---------------TS---
T ss_pred CcEEEEEecCHHHHHHHHHHHhc-C-----CCcEEEEEeCCHHHHHHH---------HHC---------------CC---
Confidence 47999999999999999999988 7 6 899999987654421 100 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~-~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
....++++++++. ++|+||+|||++.+.++++++.+++++ +++|+.++++
T Consensus 48 --------------------------~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~~l~~---~~iv~~~~~~ 98 (281)
T 2g5c_A 48 --------------------------IDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE---DATVTDQGSV 98 (281)
T ss_dssp --------------------------CSEEESCGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCT---TCEEEECCSC
T ss_pred --------------------------cccccCCHHHHhcCCCCEEEEcCCHHHHHHHHHHHHhhCCC---CcEEEECCCC
Confidence 0123566777788 999999999999999999999988876 5666665533
Q ss_pred ccccccccccCCCHHHHHHhHhCC---CCccEE--EEeCCchhh-hhhccCceEEEE--eCChhHHHHHHHHHcCCCCeE
Q 012349 200 VEAELEAVPRIITPTQMINRATGV---PIENIL--YLGGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTV 271 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~---~~~~i~--vlsGP~~a~-ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v 271 (465)
... ..+.+.+.++. +.+++. ..+||+++. ++..+.++.++. +.+++..+.++++|+..|+++
T Consensus 99 -~~~---------~~~~l~~~l~~~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~ 168 (281)
T 2g5c_A 99 -KGK---------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVV 168 (281)
T ss_dssp -CTH---------HHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEE
T ss_pred -cHH---------HHHHHHHhccccceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEE
Confidence 221 11233443321 112221 345777765 445666554433 346677899999999999999
Q ss_pred EecCChHH---HHHHHHHHHHHHHHH
Q 012349 272 WDNGDLVT---HEVMGGLKNVYAIGA 294 (465)
Q Consensus 272 ~~s~Di~g---ve~~galKNviAia~ 294 (465)
+..++... +.+++.+.|.++++.
T Consensus 169 ~~~~~~~~d~~~~~~~~~~~~~a~~~ 194 (281)
T 2g5c_A 169 EYMSPELHDYVFGVVSHLPHAVAFAL 194 (281)
T ss_dssp EECCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887766 444555566544433
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-14 Score=137.91 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=115.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ |.+.+ ++|++|+|+++. .
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~-g~~~~-~~v~~~~~~~~~------------------------------~------- 44 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANA-NIIKK-ENLFYYGPSKKN------------------------------T------- 44 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHH-TSSCG-GGEEEECSSCCS------------------------------S-------
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCCCC-CeEEEEeCCccc------------------------------C-------
Confidence 47999999999999999999988 62211 589999998641 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.+.+++++.+++.++|+||+|||++.++++++++.++++ ++.+|+.++|+..
T Consensus 45 ------------------------g~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l~~~l~----~~~vv~~~~gi~~ 96 (262)
T 2rcy_A 45 ------------------------TLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNIKPYLS----SKLLISICGGLNI 96 (262)
T ss_dssp ------------------------SSEECSCHHHHHHHCSEEEECSCTTTHHHHHHHSGGGCT----TCEEEECCSSCCH
T ss_pred ------------------------ceEEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHHHHhcC----CCEEEEECCCCCH
Confidence 123456677778899999999999999999999998874 5789999999976
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
+ .+++.++.. .+ .+..+|+++.....| ++.+..+. +++..+.++++|+..|..++..+|.
T Consensus 97 ~------------~l~~~~~~~-~~-~v~~~p~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~ll~~~G~~~~~~~~~ 158 (262)
T 2rcy_A 97 G------------KLEEMVGSE-NK-IVWVMPNTPCLVGEG-SFIYCSNKNVNSTDKKYVNDIFNSCGIIHEIKEKD 158 (262)
T ss_dssp H------------HHHHHHCTT-SE-EEEEECCGGGGGTCE-EEEEEECTTCCHHHHHHHHHHHHTSEEEEECCGGG
T ss_pred H------------HHHHHhCCC-Cc-EEEECCChHHHHcCC-eEEEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHH
Confidence 4 466666532 13 356789999888777 44333332 5677899999999999755555554
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-15 Score=140.50 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=122.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEE-EecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l-~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+||||+|||+|+||+++|..|+++ | ++|++ |+|+++.++++. +. +
T Consensus 22 ~mmkI~IIG~G~mG~~la~~l~~~-g-----~~V~~v~~r~~~~~~~l~---------~~-------------~------ 67 (220)
T 4huj_A 22 SMTTYAIIGAGAIGSALAERFTAA-Q-----IPAIIANSRGPASLSSVT---------DR-------------F------ 67 (220)
T ss_dssp GSCCEEEEECHHHHHHHHHHHHHT-T-----CCEEEECTTCGGGGHHHH---------HH-------------H------
T ss_pred cCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCCHHHHHHHH---------HH-------------h------
Confidence 358999999999999999999998 7 89999 999987655311 10 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
++..+.+..+++.++|+||+|||++.++++++++.+ ++ +++||+++||+
T Consensus 68 --------------------------g~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~-~~----~~ivi~~~~g~ 116 (220)
T 4huj_A 68 --------------------------GASVKAVELKDALQADVVILAVPYDSIADIVTQVSD-WG----GQIVVDASNAI 116 (220)
T ss_dssp --------------------------TTTEEECCHHHHTTSSEEEEESCGGGHHHHHTTCSC-CT----TCEEEECCCCB
T ss_pred --------------------------CCCcccChHHHHhcCCEEEEeCChHHHHHHHHHhhc-cC----CCEEEEcCCCC
Confidence 011222334557899999999999999999999877 43 57999999999
Q ss_pred ccccccc--ccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc-cC-----ceEEEE-eCChhHHHHHHHHHcCCCCeE
Q 012349 201 EAELEAV--PRIITPTQMINRATGVPIENILYLGGPNIASEIYN-KE-----YANARI-CGAEKWRKPLAKFLRRPHFTV 271 (465)
Q Consensus 201 ~~~~~~~--~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~-g~-----~t~~~~-~~~~~~~~~l~~ll~~~g~~v 271 (465)
+...... .+....++.+++.++. .+ .+...|++...+.. +. +..+.+ +.+++..+.++++|+..|+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~l~~--~~-vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~~~~~~~~v~~l~~~~G~~~ 193 (220)
T 4huj_A 117 DFPAFKPRDLGGRLSTEIVSELVPG--AK-VVKAFNTLPAAVLAADPDKGTGSRVLFLSGNHSDANRQVAELISSLGFAP 193 (220)
T ss_dssp CTTTCCBCCCTTCCHHHHHHHHSTT--CE-EEEESCSSCHHHHTSCSBCSSCEEEEEEEESCHHHHHHHHHHHHHTTCEE
T ss_pred CcccccccccCCCcHHHHHHHHCCC--CC-EEECCCCCCHHHhhhCcccCCCCeeEEEeCCCHHHHHHHHHHHHHhCCCe
Confidence 6110000 0234567888888862 23 46777887776554 22 232333 456778899999999999999
Q ss_pred EecCChHHH
Q 012349 272 WDNGDLVTH 280 (465)
Q Consensus 272 ~~s~Di~gv 280 (465)
+...++...
T Consensus 194 ~~~G~l~~a 202 (220)
T 4huj_A 194 VDLGTLAAS 202 (220)
T ss_dssp EECCSHHHH
T ss_pred EeeCChhhc
Confidence 999887544
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=154.02 Aligned_cols=225 Identities=14% Similarity=0.116 Sum_probs=150.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|+||+.+|..|+++ | ++++|++|+|++++++.+ ++++ .+.+.+++.
T Consensus 4 ~~mkI~VIG~G~mG~~lA~~La~~-g---~G~~V~~~d~~~~~~~~l---------~~g~--------~~i~e~~l~--- 59 (467)
T 2q3e_A 4 EIKKICCIGAGYVGGPTCSVIAHM-C---PEIRVTVVDVNESRINAW---------NSPT--------LPIYEPGLK--- 59 (467)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHH-C---TTSEEEEECSCHHHHHHH---------TSSS--------CSSCCTTHH---
T ss_pred CccEEEEECCCHHHHHHHHHHHhc-C---CCCEEEEEECCHHHHHHH---------hCCC--------CCcCCCCHH---
Confidence 358999999999999999999987 4 128999999998877653 2221 233333321
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch---------------HHHHHHHHHHhhhc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE---------------TKEVFEEISRYWKE 186 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~---------------l~~vl~~l~~~l~~ 186 (465)
+++..+. ..++.+++|+++++.++|+||+|||... +.++++++.+++++
T Consensus 60 --------~~~~~~~--------~~~~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~ 123 (467)
T 2q3e_A 60 --------EVVESCR--------GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNG 123 (467)
T ss_dssp --------HHHHHHB--------TTTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCS
T ss_pred --------HHHHHhh--------cCCEEEECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCC
Confidence 1111100 0147788999888999999999998543 67888899888776
Q ss_pred cCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc----cCceEEEEeC-----ChhHH
Q 012349 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICG-----AEKWR 257 (465)
Q Consensus 187 ~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~----g~~t~~~~~~-----~~~~~ 257 (465)
+++||..+ .+.+.+ ...+.+.+.+. +.....+.+.++|.++.+... ..+..+++++ +++..
T Consensus 124 ---g~iVV~~S-Tv~~g~-----~~~l~~~l~~~-~~~~~d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~ 193 (467)
T 2q3e_A 124 ---YKIVTEKS-TVPVRA-----AESIRRIFDAN-TKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAV 193 (467)
T ss_dssp ---EEEEEECS-CCCTTH-----HHHHHHHHHHT-CCTTCEEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHH
T ss_pred ---CCEEEECC-cCCchH-----HHHHHHHHHHh-CCCCCCeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHH
Confidence 56666544 344431 12233444432 211124567899998875432 1233344554 45667
Q ss_pred HHHHHHHcCC-CCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhc
Q 012349 258 KPLAKFLRRP-HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 334 (465)
Q Consensus 258 ~~l~~ll~~~-g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~ 334 (465)
+.++++|+.. +..+....|+...||.|.+-|.+ + ++....++|+..+++++|++++++.
T Consensus 194 ~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~-----------------~-a~~ia~~nE~~~l~~~~Gid~~~v~ 253 (467)
T 2q3e_A 194 QALCAVYEHWVPREKILTTNTWSSELSKLAANAF-----------------L-AQRISSINSISALCEATGADVEEVA 253 (467)
T ss_dssp HHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 8999999987 65667777888889998888853 1 3456788999999999999876554
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=150.53 Aligned_cols=211 Identities=16% Similarity=0.153 Sum_probs=146.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|+||+.+|..|++ | ++|++|++++++++.+ +++ .++.+.++++
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~--G-----~~V~~~D~~~~~v~~l---------~~g--------~~~i~e~~l~--- 87 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ--N-----HEVVALDIVQAKVDML---------NQK--------ISPIVDKEIQ--- 87 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT--T-----SEEEEECSCHHHHHHH---------HTT--------CCSSCCHHHH---
T ss_pred CCCEEEEECcCHHHHHHHHHHHc--C-----CeEEEEecCHHHhhHH---------hcc--------CCccccccHH---
Confidence 45899999999999999999985 5 8999999999877753 322 1344555432
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-----------hHHHHHHHHHHhhhccCCC
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-----------ETKEVFEEISRYWKERITV 190 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-----------~l~~vl~~l~~~l~~~~~~ 190 (465)
|+++.+ ..++.+++|+++++++||+||+|||+. +++++++.+.+ +++ +
T Consensus 88 --------~ll~~~---------~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~---g 146 (432)
T 3pid_A 88 --------EYLAEK---------PLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INP---N 146 (432)
T ss_dssp --------HHHHHS---------CCCEEEESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCT---T
T ss_pred --------HHHhhc---------cCCeEEEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCC---C
Confidence 222211 015789999999999999999999986 68999999998 776 6
Q ss_pred CEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc----cCceEEEEeCChhHHHHHHHHHcC
Q 012349 191 PVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN----KEYANARICGAEKWRKPLAKFLRR 266 (465)
Q Consensus 191 ~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~----g~~t~~~~~~~~~~~~~l~~ll~~ 266 (465)
++|| ...++.+.+ ++.+.+.++.. .+.+.|.+..+... -.+..++++++++.++++..+|..
T Consensus 147 ~iVV-~~STv~pgt---------t~~l~~~l~~~----~v~~sPe~~~~G~A~~~~l~p~rIvvG~~~~~~~~~~~ll~~ 212 (432)
T 3pid_A 147 AVMI-IKSTIPVGF---------TRDIKERLGID----NVIFSPEFLREGRALYDNLHPSRIVIGERSARAERFADLLKE 212 (432)
T ss_dssp SEEE-ECSCCCTTH---------HHHHHHHHTCC----CEEECCCCCCTTSHHHHHHSCSCEEESSCSHHHHHHHHHHHH
T ss_pred cEEE-EeCCCChHH---------HHHHHHHHhhc----cEeecCccCCcchhhhcccCCceEEecCCHHHHHHHHHHHHh
Confidence 7665 444676652 24455555421 34568888766442 123446777777788888888875
Q ss_pred C----CCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchh
Q 012349 267 P----HFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKL 333 (465)
Q Consensus 267 ~----g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~ 333 (465)
. +.++.. .|+...|+.|.+-|.+ + ++-...++|+..+|+++|.++..+
T Consensus 213 ~~~~~~~~v~~-~~~~~AE~~Kl~~N~~-----------------~-a~~Ia~~nEl~~lae~~GiD~~~v 264 (432)
T 3pid_A 213 GAIKQDIPTLF-TDSTEAEAIKLFANTY-----------------L-ALRVAYFNELDSYAESQGLNSKQI 264 (432)
T ss_dssp HCSSSSCCEEE-CCHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhccCCCeEEe-cCccHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 2 223444 5788788887776642 1 234467889999999999876544
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-15 Score=158.33 Aligned_cols=274 Identities=13% Similarity=0.074 Sum_probs=167.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|.||+++|..|+++ | ++|++|+|+++.++.+. +.+ ..+
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~-G-----~~V~v~dr~~~~~~~l~---------~~g------------~~g----- 50 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFL---------ANE------------AKG----- 50 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHH---------HTT------------TTT-----
T ss_pred CCCEEEEEChhHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHH---------hcc------------cCC-----
Confidence 458999999999999999999999 8 89999999997665421 110 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~---~aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
.++..+++++++++ ++|+||++||+ +.++++++++.+++++ +++||.++
T Consensus 51 ------------------------~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~l~~~L~~---g~iIId~s 103 (484)
T 4gwg_A 51 ------------------------TKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDT---GDIIIDGG 103 (484)
T ss_dssp ------------------------SSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHHHHHHHGGGCCT---TCEEEECS
T ss_pred ------------------------CceeccCCHHHHHhhccCCCEEEEecCChHHHHHHHHHHHHhcCC---CCEEEEcC
Confidence 13445677888766 59999999999 4899999999999877 78999999
Q ss_pred ccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 198 kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
++....+ ....+.+.+ .|.......+..||..+. .|. .++++++++..+.++.+|+..+-++ .+|.
T Consensus 104 t~~~~~t------~~~~~~l~~-~Gi~fvd~pVsGg~~gA~---~G~--~im~GG~~ea~~~v~pll~~ig~~v--~~~~ 169 (484)
T 4gwg_A 104 NSEYRDT------TRRCRDLKA-KGILFVGSGVSGGEEGAR---YGP--SLMPGGNKEAWPHIKTIFQGIAAKV--GTGE 169 (484)
T ss_dssp CCCHHHH------HHHHHHHHH-TTCEEEEEEEESHHHHHH---HCC--EEEEEECGGGHHHHHHHHHHHSCBC--TTSC
T ss_pred CCCchHH------HHHHHHHHh-hccccccCCccCCHHHHh---cCC--eeecCCCHHHHHHHHHHHHHhcCcc--cCCC
Confidence 8875432 112222322 232111223444455443 343 3566777888889999998655443 1222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHH-hCCCcchhccC-c---hhhhhhcccCchhHH
Q 012349 278 VTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHL-LAEEPEKLAGP-L---LADTYVTLLKGRNAW 352 (465)
Q Consensus 278 ~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a-~G~~~~t~~g~-g---lgDl~~T~~~sRN~~ 352 (465)
.++.++|. .|....+++. .|.....+.+++.|+..+++. +|.+++++.+. . -|+ ..++..+|+.
T Consensus 170 ~~~~~~G~--------~Gag~~vKmv-~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~--~~S~l~e~~~ 238 (484)
T 4gwg_A 170 PCCDWVGD--------EGAGHFVKMV-HNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTE--LDSFLIEITA 238 (484)
T ss_dssp BSBCCCEE--------TTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTT--TCBHHHHHHH
T ss_pred ceEEEECC--------ccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCC--ccchHHHHHH
Confidence 22222110 1111222222 233334566889999999999 99998776441 0 111 1222344543
Q ss_pred HHHHHhc----CC-ChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCc-HHHHHHHHHh
Q 012349 353 YGQELAK----GR-LTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCP-ILKMLYKILI 422 (465)
Q Consensus 353 ~G~~l~~----g~-~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~P-i~~~vy~il~ 422 (465)
..|.+ |. .++.+.+. .++.-||.-|+.. +.++| ++ +| |..+||.-+.
T Consensus 239 --~~l~~~D~~g~~~ld~i~d~--~~~kgtG~wt~~~----A~~~g--------------vp-~p~i~~av~~R~~ 291 (484)
T 4gwg_A 239 --NILKFQDTDGKHLLPKIRDS--AGQKGTGKWTAIS----ALEYG--------------VP-VTLIGEAVFARCL 291 (484)
T ss_dssp --HHHHCBCTTSSBSGGGSCCC--CCSSCTTHHHHHH----HHHHT--------------CC-CHHHHHHHHHHHH
T ss_pred --HHHhcCCccCCccHHHHhcc--ccCcchHHHHHHH----HHHcC--------------CC-chHHHHHHHHHHH
Confidence 34442 22 23333322 2346799888666 34777 47 79 6777876554
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-14 Score=139.16 Aligned_cols=192 Identities=12% Similarity=0.121 Sum_probs=120.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh--hhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS--VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~--~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
..|||+|||+|+||+++|..|+++ | ++|++|+|+++. .+....+ ++ +.. +..+.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~-G-----~~V~~~~r~~~~~~~~~~~~~-----~~-----------~~~-~~~~~- 73 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADL-G-----HEVTIGTRDPKATLARAEPDA-----MG-----------APP-FSQWL- 73 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHTCC-----------------------CC-HHHHG-
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCChhhhhhhhhhhh-----hc-----------chh-hhHHH-
Confidence 458999999999999999999998 7 899999999864 1110000 00 000 00000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHH-HHhhhccCCCCEEEEeec
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEI-SRYWKERITVPVIISLAK 198 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l-~~~l~~~~~~~ivIs~~k 198 (465)
. .+ ... .++++.++++++|+||+|||++...+++.++ .+.+ + +++||+++|
T Consensus 74 --~--~~-------------------~~~-~~~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~---g~ivi~~s~ 125 (245)
T 3dtt_A 74 --P--EH-------------------PHV-HLAAFADVAAGAELVVNATEGASSIAALTAAGAENL-A---GKILVDIAN 125 (245)
T ss_dssp --G--GS-------------------TTC-EEEEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-T---TSEEEECCC
T ss_pred --h--hc-------------------Cce-eccCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-C---CCEEEECCC
Confidence 0 00 012 3466778889999999999999999999998 7777 4 689999998
Q ss_pred cccccc-----cccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccC------ceEEEEe-CChhHHHHHHHHHcC
Q 012349 199 GVEAEL-----EAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKE------YANARIC-GAEKWRKPLAKFLRR 266 (465)
Q Consensus 199 Gi~~~~-----~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~------~t~~~~~-~~~~~~~~l~~ll~~ 266 (465)
|+.... ....+...+++.+++.++. .+ .+...|+....+..+. +..++++ .+++..+.++.+|+.
T Consensus 126 ~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~--~~-vv~~~~~~~a~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~ 202 (245)
T 3dtt_A 126 PLDFSHGMPPTLNPVNTDSLGEQIQRTFPE--AK-VVKTLNTMNASLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKS 202 (245)
T ss_dssp CEECTTCSSCEESSCSSCCHHHHHHHHSTT--SE-EEECSTTSCHHHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCcCCccccccCCCCccHHHHHHHHCCC--Ce-EEEeecccCHHHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHH
Confidence 763210 0001345778889888863 23 3344444444333221 2223444 457788999999999
Q ss_pred CCCe-EEecCChHHHHHHHHHHH
Q 012349 267 PHFT-VWDNGDLVTHEVMGGLKN 288 (465)
Q Consensus 267 ~g~~-v~~s~Di~gve~~galKN 288 (465)
.+++ ++...++-.....+.+-|
T Consensus 203 ~g~~~~~~~G~~g~a~~~k~~~~ 225 (245)
T 3dtt_A 203 LGHQDVIDLGDITTARGAEMLLP 225 (245)
T ss_dssp TTCCCEEEEESGGGHHHHHTTHH
T ss_pred cCCCceeccCcHHHHHHhhhhHH
Confidence 9985 455555533333333334
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.7e-14 Score=138.62 Aligned_cols=259 Identities=16% Similarity=0.174 Sum_probs=154.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||.|.||..+|..|+++ | |+|++|+|+++++++ +..
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~--------------------------l~~------- 46 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA-G-----YELVVWNRTASKAEP--------------------------LTK------- 46 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEC-------CT--------------------------TTT-------
T ss_pred CcEEEEecHHHHHHHHHHHHHC-C-----CeEEEEeCCHHHHHH--------------------------HHH-------
Confidence 5899999999999999999999 8 999999999875543 110
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeecccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
......+++.++++++|+||+++|.. ..++++ ..+.+.+.+ ++++|.++. +.
T Consensus 47 ----------------------~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~---~~iiid~sT-~~ 100 (297)
T 4gbj_A 47 ----------------------LGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGK---DGVHVSMST-IS 100 (297)
T ss_dssp ----------------------TTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCT---TCEEEECSC-CC
T ss_pred ----------------------cCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCC---CeEEEECCC-CC
Confidence 03456678888999999999999975 445544 456666665 677776664 34
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHH-H
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVT-H 280 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~g-v 280 (465)
+++ .+.+.+.+.+ .|.......+..||..+. .|..+ ++++++.+..++++.+|+..+-++++..+..| -
T Consensus 101 p~~-----~~~~~~~~~~-~g~~~ldapVsGg~~~a~---~g~l~-im~gG~~~~~~~~~~~l~~~g~~i~~~g~~~G~g 170 (297)
T 4gbj_A 101 PET-----SRQLAQVHEW-YGAHYVGAPIFARPEAVR---AKVGN-ICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAA 170 (297)
T ss_dssp HHH-----HHHHHHHHHH-TTCEEEECCEECCHHHHH---HTCCE-EEEEECHHHHHHHHHHHHTTCSEEEECCSCTTHH
T ss_pred hHH-----HHHHHHHHHh-cCCceecCCcCCCccccc---cccce-eecccchhHHHHHHHHHHHhhCCeEEecCCccHH
Confidence 431 1122222222 221111112334443333 34433 45677888889999999999988877665434 3
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhccc-Cchh-HHHHHHHh
Q 012349 281 EVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL-KGRN-AWYGQELA 358 (465)
Q Consensus 281 e~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~-~sRN-~~~G~~l~ 358 (465)
+..|.+-|. .......++.|...++++.|.+++++.. .+.+.. .|.- ..++..+.
T Consensus 171 ~~~Kl~~N~------------------~~~~~~~~~aEa~~la~~~Gld~~~~~~-----~l~~~~~~s~~~~~~~~~~~ 227 (297)
T 4gbj_A 171 NVIKLAGNF------------------MIACSLEMMGEAFTMAEKNGISRQSIYE-----MLTSTLFAAPIFQNYGKLVA 227 (297)
T ss_dssp HHHHHHHHH------------------HHHHHHHHHHHHHHHHHHTTCCHHHHHH-----HHHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------HHHHHHHHHHHHHHHHHHcCCCHHHHHH-----HHHhhcccCchhhccCcccc
Confidence 333333332 1123456788999999999999987753 222221 1111 12333333
Q ss_pred cCCChhhHhHhhcCCccc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 359 KGRLTLDLGDSIKGKGMI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 359 ~g~~~~~~~~~~~~~~~v-EG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
.+.-. ..+-.+ -.......+.+++++.|+ + +|+...+++++.
T Consensus 228 ~~~~~-------p~~f~~~l~~KDl~l~~~~A~~~g~--------------~-~p~~~~~~~~~~ 270 (297)
T 4gbj_A 228 SNTYE-------PVAFRFPLGLKDINLTLQTASDVNA--------------P-MPFADIIRNRFI 270 (297)
T ss_dssp HTCCC-------SCSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred CCCCC-------CccchhHHHHHHHHHHHHHHHHhCC--------------C-ChHHHHHHHHHH
Confidence 32210 000011 234556678899999994 6 899999888764
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-13 Score=131.95 Aligned_cols=256 Identities=13% Similarity=0.090 Sum_probs=155.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|.||+++|..|+++ | ++|++|+|+++.++++ .+.
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~~-G-----~~V~~~dr~~~~~~~~---------~~~--------------------- 51 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLKQ-G-----KRVAIWNRSPGKAAAL---------VAA--------------------- 51 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHH---------HHH---------------------
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHH---------HHC---------------------
Confidence 458999999999999999999998 7 8999999998755431 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHH--HHHHhhhccCCCCEEEEeec
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE--EISRYWKERITVPVIISLAK 198 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~--~l~~~l~~~~~~~ivIs~~k 198 (465)
++..+++++++++++|+||++||.. .+++++. .+.+. .+ ++++|.++.
T Consensus 52 -------------------------g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~~-~~---g~ivid~st 102 (306)
T 3l6d_A 52 -------------------------GAHLCESVKAALSASPATIFVLLDNHATHEVLGMPGVARA-LA---HRTIVDYTT 102 (306)
T ss_dssp -------------------------TCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHHHH-TT---TCEEEECCC
T ss_pred -------------------------CCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcccchhhc-cC---CCEEEECCC
Confidence 2345678888899999999999976 5888886 66554 33 577777764
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEec--CC
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN--GD 276 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s--~D 276 (465)
+ .+.+ ...+.+.+.+ .|.......+..+|..+ ..+.. .++++++++..++++.+|+..+-+++.. .+
T Consensus 103 ~-~~~~-----~~~l~~~~~~-~g~~~vdapv~g~~~~~---~~~~~-~i~~gg~~~~~~~~~~ll~~lg~~~~~~~~g~ 171 (306)
T 3l6d_A 103 N-AQDE-----GLALQGLVNQ-AGGHYVKGMIVAYPRNV---GHRES-HSIHTGDREAFEQHRALLEGLAGHTVFLPWDE 171 (306)
T ss_dssp C-CTTH-----HHHHHHHHHH-TTCEEEEEEEESCGGGT---TCTTC-EEEEEECHHHHHHHHHHHHTTCSEEEECCHHH
T ss_pred C-CHHH-----HHHHHHHHHH-cCCeEEecccccCcccc---cCCce-EEEEcCCHHHHHHHHHHHHHhcCCEEEecCCC
Confidence 3 3331 1122222222 22111111222233222 22222 3455677888899999999885566655 33
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhcccC-chhH---H
Q 012349 277 LVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLLK-GRNA---W 352 (465)
Q Consensus 277 i~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~~-sRN~---~ 352 (465)
-.|. +.++|++++ ....++.|+..++++.|.+++++.. ++..... .++. .
T Consensus 172 ~~g~--g~~~k~~~~-------------------~~~~~~~Ea~~la~~~Gld~~~~~~-----~~~~~~~~~~s~~~~~ 225 (306)
T 3l6d_A 172 ALAF--ATVLHAHAF-------------------AAMVTFFEAVGAGDRFGLPVSKTAR-----LLLETSRFFVADALEE 225 (306)
T ss_dssp HHHH--HHHHHHHHH-------------------HHHHHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred CccH--HHHHHHHHH-------------------HHHHHHHHHHHHHHHcCCCHHHHHH-----HHHHhhhhcccHHHHH
Confidence 2222 334441110 1235788999999999999887743 2222110 1111 1
Q ss_pred HHHHHhcCCChhhHhHhhcCCc-cc-chHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHh
Q 012349 353 YGQELAKGRLTLDLGDSIKGKG-MI-QGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILI 422 (465)
Q Consensus 353 ~G~~l~~g~~~~~~~~~~~~~~-~v-EG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~ 422 (465)
++..+.++. ..... ++ -.....+.+.+.+++.|+ + +|+.+.+.+++.
T Consensus 226 ~~~~~~~~~--------~~~~~~~~~~~~KDl~~~~~~a~~~g~--------------~-~p~~~~~~~~~~ 274 (306)
T 3l6d_A 226 AVRRLETQD--------FKGDQARLDVHADAFAHIAQSLHAQGV--------------W-TPVFDAVCQVVQ 274 (306)
T ss_dssp HHHHHHHTC--------CCTTSSBHHHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHH
T ss_pred HHHHHhcCC--------CCCCcccHHHHHHHHHHHHHHHHHcCC--------------C-chHHHHHHHHHH
Confidence 233333221 11111 22 234566788999999994 6 799999988875
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-13 Score=140.73 Aligned_cols=239 Identities=14% Similarity=0.091 Sum_probs=151.1
Q ss_pred cCCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhh
Q 012349 13 SSNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEH 92 (465)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~ 92 (465)
||.-+-|||+|-+- ....|.+|+|||+|.+|..+|..||+. | |+|+.+|.++++++.
T Consensus 3 ~~~~~~~~~~~~~p------------~~~~m~~IaViGlGYVGLp~A~~~A~~-G-----~~V~g~Did~~kV~~----- 59 (444)
T 3vtf_A 3 SSHHHHHHSSGLVP------------RGSHMASLSVLGLGYVGVVHAVGFALL-G-----HRVVGYDVNPSIVER----- 59 (444)
T ss_dssp ----------CCCC------------TTCCCCEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCHHHHHH-----
T ss_pred cccccccccCCcCC------------CCCCCCEEEEEccCHHHHHHHHHHHhC-C-----CcEEEEECCHHHHHH-----
Confidence 66677888888653 112456999999999999999999999 8 999999999988876
Q ss_pred hHHHHhchhhhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc--
Q 012349 93 LFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-- 170 (465)
Q Consensus 93 l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-- 170 (465)
+|++. .+.+.|+++ |++.+.... .++.+|+|.++++.++|++|+|||.
T Consensus 60 ----ln~G~--------~pi~Epgl~-----------ell~~~~~~-------g~l~~tt~~~~ai~~ad~~~I~VpTP~ 109 (444)
T 3vtf_A 60 ----LRAGR--------PHIYEPGLE-----------EALGRALSS-------GRLSFAESAEEAVAATDATFIAVGTPP 109 (444)
T ss_dssp ----HHTTC--------CSSCCTTHH-----------HHHHHHHHT-------TCEEECSSHHHHHHTSSEEEECCCCCB
T ss_pred ----HHCCC--------CCCCCCCHH-----------HHHHHHHHc-------CCeeEEcCHHHHHhcCCceEEEecCCC
Confidence 44432 344545432 333322111 2588999999999999999999975
Q ss_pred --------chHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCC-HHHHHHhHhCCCCccEEEEeCCchhhhhh
Q 012349 171 --------TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIIT-PTQMINRATGVPIENILYLGGPNIASEIY 241 (465)
Q Consensus 171 --------~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~-~se~I~e~lg~~~~~i~vlsGP~~a~ev~ 241 (465)
.++.++++.|.+++++..++++|| .-..+.+. +.+. ....+.+..+ ...+.+.+.|.+..+..
T Consensus 110 ~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV-~eSTVppG-----tte~~~~~~l~~~~~--~~~f~v~~~PErl~eG~ 181 (444)
T 3vtf_A 110 APDGSADLRYVEAAARAVGRGIRAKGRWHLVV-VKSTVPPG-----TTEGLVARAVAEEAG--GVKFSVASNPEFLREGS 181 (444)
T ss_dssp CTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEE-ECSCCCTT-----TTTTHHHHHHHTTTT--TCCCEEEECCCCCCTTS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEE-EeCCCCCc-----hHHHHHHHHHHHhCC--CCCceeecCcccccCCc
Confidence 268899999999886421134443 43345554 2332 2234444333 23467889999988644
Q ss_pred c----cCceEEEEeC-ChhHHHHHHHHHcCCCCeEEecCChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHH
Q 012349 242 N----KEYANARICG-AEKWRKPLAKFLRRPHFTVWDNGDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCT 316 (465)
Q Consensus 242 ~----g~~t~~~~~~-~~~~~~~l~~ll~~~g~~v~~s~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~ 316 (465)
. ..+..++++. ++...+.++++++...-.+ +..|+...|+.|.+-|.+ ++. =...+
T Consensus 182 a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~-~~~~~~~AE~~Kl~eN~~-----------------rav-nIa~~ 242 (444)
T 3vtf_A 182 ALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPK-LVMKPREAELVKYASNVF-----------------LAL-KISFA 242 (444)
T ss_dssp HHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCE-EEECHHHHHHHHHHHHHH-----------------HHH-HHHHH
T ss_pred cccccccCCcEEEcCCCHHHHHHHHHHHhccCCCE-EEechhHHHHHHHHHHHH-----------------HHH-HHHHH
Confidence 2 1233445554 4556677888887654443 456888899988877742 221 22457
Q ss_pred HHHHHHHHHhCCCcc
Q 012349 317 SEMVFITHLLAEEPE 331 (465)
Q Consensus 317 ~E~~~l~~a~G~~~~ 331 (465)
+|+..+|+.+|++..
T Consensus 243 NEla~ice~~GiDv~ 257 (444)
T 3vtf_A 243 NEVGLLAKRLGVDTY 257 (444)
T ss_dssp HHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 899999999988643
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-14 Score=139.19 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=131.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.|+||++||.|.||..||..|.++ | |+|++|+|+++.++.+ ..
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~-G-----~~v~v~dr~~~~~~~l--------------------------~~----- 44 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKA-G-----YLLNVFDLVQSAVDGL--------------------------VA----- 44 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHH--------------------------HH-----
T ss_pred CcCEEEEeeehHHHHHHHHHHHhC-C-----CeEEEEcCCHHHHHHH--------------------------HH-----
Confidence 467999999999999999999999 8 9999999998765431 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHH---HHHhhhccCCCCEEEEee
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLA 197 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~---l~~~l~~~~~~~ivIs~~ 197 (465)
......+++.++++.+|+||+|+|.. .+++++.. +.+.+.+ ++++|.++
T Consensus 45 ------------------------~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~---g~iiId~s 97 (300)
T 3obb_A 45 ------------------------AGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAP---GTLVLECS 97 (300)
T ss_dssp ------------------------TTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC----CEEEECS
T ss_pred ------------------------cCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCC---CCEEEECC
Confidence 02345678899999999999999964 67777755 3444444 67787776
Q ss_pred ccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 198 kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
.. .+++ .+.+.+.+.+ .|.......|..||.-|. .|..+ ++++++++..++++.+|+.-+-++++..+.
T Consensus 98 T~-~p~~-----~~~~a~~~~~-~G~~~lDaPVsGg~~~A~---~G~L~-imvGG~~~~~~~~~p~l~~~g~~i~~~G~~ 166 (300)
T 3obb_A 98 TI-APTS-----ARKIHAAARE-RGLAMLDAPVSGGTAGAA---AGTLT-FMVGGDAEALEKARPLFEAMGRNIFHAGPD 166 (300)
T ss_dssp CC-CHHH-----HHHHHHHHHT-TTCEEEECCEESCHHHHH---HTCEE-EEEESCHHHHHHHHHHHHHHEEEEEEEEST
T ss_pred CC-CHHH-----HHHHHHHHHH-cCCEEEecCCCCCHHHHH---hCCEE-EEEeCCHHHHHHHHHHHHHhCCCEEEeCCc
Confidence 43 3331 1112222222 121111112445554444 45544 456888888899999999888777777665
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhc
Q 012349 278 VTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLA 334 (465)
Q Consensus 278 ~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~ 334 (465)
=.-...|.+-|.+ ......++.|...++++.|.+++.+.
T Consensus 167 G~g~~~Kl~~N~l------------------~~~~~~a~aEa~~la~~~Gld~~~~~ 205 (300)
T 3obb_A 167 GAGQVAKVCNNQL------------------LAVLMIGTAEAMALGVANGLEAKVLA 205 (300)
T ss_dssp THHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3233344444421 12334678899999999999988764
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-13 Score=135.83 Aligned_cols=150 Identities=13% Similarity=0.136 Sum_probs=104.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|.||..+|..|+++ | ++|++|+|+++.++.+ .+.
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~-G-----~~V~v~dr~~~~~~~l---------~~~---------------------- 64 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKG-G-----HECVVYDLNVNAVQAL---------ERE---------------------- 64 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHH---------HTT----------------------
T ss_pred CCEEEEECchHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHHHH---------HHC----------------------
Confidence 48999999999999999999999 8 8999999998755431 110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCC---CEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDA---DIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~a---DiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
++..++++++++.++ |+||++||+..++++++.+.+.+++ +++||.++++
T Consensus 65 ------------------------g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl~~l~~~l~~---g~iiId~st~ 117 (358)
T 4e21_A 65 ------------------------GIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSMLQRMTPLLAA---NDIVIDGGNS 117 (358)
T ss_dssp ------------------------TCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHHHHHGGGCCT---TCEEEECSSC
T ss_pred ------------------------CCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHhhCCC---CCEEEeCCCC
Confidence 123456778888888 9999999999999999999998876 6888888876
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPH 268 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g 268 (465)
....+ ..+.+.+.+ .|.......+..||..+. .|. .++++++++..+.++.+|+..+
T Consensus 118 ~~~~~------~~~~~~l~~-~g~~~vdapVsGg~~~a~---~G~--~im~GG~~~a~~~~~~ll~~lg 174 (358)
T 4e21_A 118 HYQDD------IRRADQMRA-QGITYVDVGTSGGIFGLE---RGY--CLMIGGEKQAVERLDPVFRTLA 174 (358)
T ss_dssp CHHHH------HHHHHHHHT-TTCEEEEEEEECGGGHHH---HCC--EEEEESCHHHHHHTHHHHHHHS
T ss_pred ChHHH------HHHHHHHHH-CCCEEEeCCCCCCHHHHh---cCC--eeeecCCHHHHHHHHHHHHHhc
Confidence 54321 111122222 121111234556665554 343 3567778877788888887655
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-13 Score=131.06 Aligned_cols=157 Identities=14% Similarity=0.110 Sum_probs=108.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+|||+|||+|.||+++|..|++. | ++ |.+|+|+++.++++ .+. +
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~-g-----~~~v~~~~~~~~~~~~~---------~~~-------------~------- 54 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRK-G-----FRIVQVYSRTEESAREL---------AQK-------------V------- 54 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSHHHHHHH---------HHH-------------T-------
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC-C-----CeEEEEEeCCHHHHHHH---------HHH-------------c-------
Confidence 47999999999999999999998 7 77 99999998654431 100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
++.+++++++++.++|+||+|||++.++++++++.+.+++ +++++++++|++
T Consensus 55 -------------------------g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~---~~ivv~~s~~~~ 106 (266)
T 3d1l_A 55 -------------------------EAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQGIVEGKRE---EALMVHTAGSIP 106 (266)
T ss_dssp -------------------------TCEEESCGGGSCSCCSEEEECCCHHHHHHHHHHHHTTCCT---TCEEEECCTTSC
T ss_pred -------------------------CCceeCCHHHHhcCCCEEEEecCHHHHHHHHHHHHhhcCC---CcEEEECCCCCc
Confidence 2345667777788999999999999999999999888766 689999999987
Q ss_pred ccccccccCCCHHHHHHhHhCCCC--ccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 202 AELEAVPRIITPTQMINRATGVPI--ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~--~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
.+. +.+.++.+. ++...++|+... ...+ ...+..+.+++..+.++++|+..|++++..++.
T Consensus 107 ~~~------------l~~~~~~~~~~~~~~~~~g~~~~--~~~~-~~~~v~~~~~~~~~~~~~l~~~~g~~~~~~~~~ 169 (266)
T 3d1l_A 107 MNV------------WEGHVPHYGVFYPMQTFSKQREV--DFKE-IPFFIEASSTEDAAFLKAIASTLSNRVYDADSE 169 (266)
T ss_dssp GGG------------STTTCSSEEEEEECCCC---CCC--CCTT-CCEEEEESSHHHHHHHHHHHHTTCSCEEECCHH
T ss_pred hHH------------HHHHHHhccCcCCceecCCCchh--hcCC-CeEEEecCCHHHHHHHHHHHHhcCCcEEEeCHH
Confidence 651 333332110 011112232221 1222 222233567778899999999999888877764
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.9e-12 Score=120.88 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=108.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++|||+|||+|.||.+++..|.+. | ++|.+|+|+++.++.+ .+. +
T Consensus 2 ~~m~i~iiG~G~mG~~~a~~l~~~-g-----~~v~~~~~~~~~~~~~---------~~~-------------~------- 46 (259)
T 2ahr_A 2 NAMKIGIIGVGKMASAIIKGLKQT-P-----HELIISGSSLERSKEI---------AEQ-------------L------- 46 (259)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTS-S-----CEEEEECSSHHHHHHH---------HHH-------------H-------
T ss_pred CccEEEEECCCHHHHHHHHHHHhC-C-----CeEEEECCCHHHHHHH---------HHH-------------c-------
Confidence 458999999999999999999987 7 8999999998654431 100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
++..++++++++.++|+||+|||++.+++++..+. + +++++++++|+.
T Consensus 47 -------------------------g~~~~~~~~~~~~~~D~Vi~~v~~~~~~~v~~~l~----~---~~~vv~~~~~~~ 94 (259)
T 2ahr_A 47 -------------------------ALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLH----F---KQPIISMAAGIS 94 (259)
T ss_dssp -------------------------TCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTSC----C---CSCEEECCTTCC
T ss_pred -------------------------CCEeeCCHHHHHhcCCEEEEEeCcHhHHHHHHHhc----c---CCEEEEeCCCCC
Confidence 12234667788889999999999999988887653 3 568889988887
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEecC
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
.+ .+++.++.. .++ +...|+++..+..|. ..++.+. +++..+.++++|+..|..++..+
T Consensus 95 ~~------------~l~~~~~~~-~~~-v~~~p~~~~~~~~g~-~~i~~~~~~~~~~~~~~~~ll~~~G~~~~~~~ 155 (259)
T 2ahr_A 95 LQ------------RLATFVGQD-LPL-LRIMPNMNAQILQSS-TALTGNALVSQELQARVRDLTDSFGSTFDISE 155 (259)
T ss_dssp HH------------HHHHHHCTT-SCE-EEEECCGGGGGTCEE-EEEEECTTCCHHHHHHHHHHHHTTEEEEECCG
T ss_pred HH------------HHHHhcCCC-CCE-EEEcCCchHHHcCce-EEEEcCCCCCHHHHHHHHHHHHhCCCEEEecH
Confidence 64 356666532 233 457899988877763 3333443 56778999999999884344433
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-12 Score=126.96 Aligned_cols=184 Identities=11% Similarity=0.139 Sum_probs=112.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++||+|||+|.||++||..|+++ | ++|++|+++++.+++... .+.+.++.. .+.. .+.... |
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~-G-----~~V~~~d~~~~~~~~~~~-~i~~~l~~~-------~~~g-~~~~~~---~ 76 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT-G-----HTVVLVDQTEDILAKSKK-GIEESLRKV-------AKKK-FAENPK---A 76 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH-HHHHHHHHH-------HHTT-SSSCHH---H
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHH-HHHHHHHHH-------HHcC-CCCccc---c
Confidence 57899999999999999999998 8 899999999887665321 111000000 0000 000000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. .+..++. ..++.+++|+++++.+||+||+|||.+. .+++++++.+++++ +++++|.++|+
T Consensus 77 ~-~~~~~~~-------------~~~i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~---~~iv~s~ts~i 139 (302)
T 1f0y_A 77 G-DEFVEKT-------------LSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAE---HTIFASNTSSL 139 (302)
T ss_dssp H-HHHHHHH-------------HHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCT---TCEEEECCSSS
T ss_pred c-hhhHHHH-------------HhceEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCC---CeEEEECCCCC
Confidence 0 0000000 0146788999888999999999999864 67888999888876 68888899888
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
+.. .+.+.++.+ .++ +-..|..+..+ +....++.+ .+++..+.+.++|+..|..+....|.
T Consensus 140 ~~~------------~l~~~~~~~-~~~-~g~h~~~P~~~--~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~ 202 (302)
T 1f0y_A 140 QIT------------SIANATTRQ-DRF-AGLHFFNPVPV--MKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDT 202 (302)
T ss_dssp CHH------------HHHTTSSCG-GGE-EEEEECSSTTT--CCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CHH------------HHHHhcCCc-ccE-EEEecCCCccc--CceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCc
Confidence 754 244444432 222 22223322222 222222223 26677889999999888776665553
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-12 Score=127.29 Aligned_cols=164 Identities=16% Similarity=0.101 Sum_probs=109.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|+||+++|..|+++ |. +++|++|+|+++.++.+ .+. +.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~-g~---~~~V~~~d~~~~~~~~~---------~~~---------------g~----- 52 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD-HP---HYKIVGYNRSDRSRDIA---------LER---------------GI----- 52 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-CT---TSEEEEECSSHHHHHHH---------HHT---------------TS-----
T ss_pred cceEEEEeeCHHHHHHHHHHHhC-CC---CcEEEEEcCCHHHHHHH---------HHc---------------CC-----
Confidence 58999999999999999999987 51 26899999987654421 100 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHh-hhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRY-WKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~-l~~~~~~~ivIs~~kGi~ 201 (465)
....++++++++.++|+||+|||++..+++++++.++ +++ +++|++++++-
T Consensus 53 ------------------------~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~~~l~~---~~ivi~~~~~~- 104 (290)
T 3b1f_A 53 ------------------------VDEATADFKVFAALADVIILAVPIKKTIDFIKILADLDLKE---DVIITDAGSTK- 104 (290)
T ss_dssp ------------------------CSEEESCTTTTGGGCSEEEECSCHHHHHHHHHHHHTSCCCT---TCEEECCCSCH-
T ss_pred ------------------------cccccCCHHHhhcCCCEEEEcCCHHHHHHHHHHHHhcCCCC---CCEEEECCCCc-
Confidence 0134566667788999999999999999999999888 776 67776555332
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEE--------EEeCCchhh-hhhccCceEEEEe--CChhHHHHHHHHHcCCCCe
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENIL--------YLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~--------vlsGP~~a~-ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~ 270 (465)
.. ..+.+.+.++....++. ..+||+.+. ++..+.++.++.. .+++..+.++++|+..|++
T Consensus 105 ~~---------~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~ 175 (290)
T 3b1f_A 105 YE---------IVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHAR 175 (290)
T ss_dssp HH---------HHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCE
T ss_pred hH---------HHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCE
Confidence 21 11345555542111111 123666554 4556655444442 4567789999999999999
Q ss_pred EEecCC
Q 012349 271 VWDNGD 276 (465)
Q Consensus 271 v~~s~D 276 (465)
++..++
T Consensus 176 ~~~~~~ 181 (290)
T 3b1f_A 176 YVEIDA 181 (290)
T ss_dssp EEECCH
T ss_pred EEEcCH
Confidence 877664
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-12 Score=118.25 Aligned_cols=185 Identities=12% Similarity=0.170 Sum_probs=120.9
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+||| +|.||++++..|++. | ++|++|+|+++..+.+..+ + + .+++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~-g-----~~V~~~~r~~~~~~~~~~~-----~---~----------~~~~~------ 50 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL-G-----HEIVVGSRREEKAEAKAAE-----Y---R----------RIAGD------ 50 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT-T-----CEEEEEESSHHHHHHHHHH-----H---H----------HHHSS------
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHHHHH-----h---c----------ccccc------
Confidence 6899999 999999999999988 7 8999999997655432110 0 0 01110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
..+. .++++++++++|+||+++|++.++++++++.+.++ +++++++++|+..
T Consensus 51 -----------------------~~~~-~~~~~~~~~~~D~Vi~~~~~~~~~~~~~~l~~~~~----~~~vi~~~~g~~~ 102 (212)
T 1jay_A 51 -----------------------ASIT-GMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILR----EKIVVSPLVPVSR 102 (212)
T ss_dssp -----------------------CCEE-EEEHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHT----TSEEEECCCCEEC
T ss_pred -----------------------CCCC-hhhHHHHHhcCCEEEEeCChhhHHHHHHHHHHHcC----CCEEEEcCCCcCc
Confidence 0233 35677778899999999999999999999888774 5799999999985
Q ss_pred ccccc--ccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc-----cCceEEEEeCChhHHHHHHHHHcCC-CCeEEec
Q 012349 203 ELEAV--PRIITPTQMINRATGVPIENILYLGGPNIASEIYN-----KEYANARICGAEKWRKPLAKFLRRP-HFTVWDN 274 (465)
Q Consensus 203 ~~~~~--~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~-----g~~t~~~~~~~~~~~~~l~~ll~~~-g~~v~~s 274 (465)
++... .......+.+++.++. .+ .+...|+....... +..+.++.+.+++..+.++++|+.. |+.+...
T Consensus 103 ~~~~~~~~~g~~~~~~l~~~~~~--~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~l~~~~~G~~~~~~ 179 (212)
T 1jay_A 103 GAKGFTYSSERSAAEIVAEVLES--EK-VVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDA 179 (212)
T ss_dssp CTTCCEECCSSCHHHHHHHHHTC--SC-EEECCTTCCHHHHHCTTCCCCEEEEEEESCHHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCC--Ce-EEEEccchHHHHhhCcCCCCCccEEEECCcHHHHHHHHHHHHHcCCCCceec
Confidence 31000 0011224567777752 23 23444444333222 2233222233467789999999999 9988777
Q ss_pred CChHHHHHHHHHHHH
Q 012349 275 GDLVTHEVMGGLKNV 289 (465)
Q Consensus 275 ~Di~gve~~galKNv 289 (465)
.++....|.+.+-|.
T Consensus 180 ~~~~~a~~~k~~~~~ 194 (212)
T 1jay_A 180 GPLSNSRLVESLTPL 194 (212)
T ss_dssp ESGGGHHHHHTHHHH
T ss_pred cchhHHHHhcchHHH
Confidence 776555665554443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=122.92 Aligned_cols=165 Identities=11% Similarity=0.122 Sum_probs=113.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+|||+|||+|.||++++..|++. | ++|++|+|+++..+.+ .+ .
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~-g-----~~V~~~~r~~~~~~~~---------~~---------------~------- 70 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGS-G-----FKVVVGSRNPKRTARL---------FP---------------S------- 70 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSHHHHHHH---------SB---------------T-------
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHH---------HH---------------c-------
Confidence 47999999999999999999988 7 8999999987643321 00 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
++..+ +.++++.++|+||+|+|++.++++++ +.+.+ + +++++++++|+..
T Consensus 71 ------------------------g~~~~-~~~~~~~~~DvVi~av~~~~~~~v~~-l~~~~-~---~~~vv~~s~g~~~ 120 (215)
T 2vns_A 71 ------------------------AAQVT-FQEEAVSSPEVIFVAVFREHYSSLCS-LSDQL-A---GKILVDVSNPTEQ 120 (215)
T ss_dssp ------------------------TSEEE-EHHHHTTSCSEEEECSCGGGSGGGGG-GHHHH-T---TCEEEECCCCCHH
T ss_pred ------------------------CCcee-cHHHHHhCCCEEEECCChHHHHHHHH-HHHhc-C---CCEEEEeCCCccc
Confidence 12333 66778899999999999988888776 76665 4 6899999999876
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEE----EeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILY----LGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~v----lsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
.... ......+++.+.++. .++.. ++++.++..+..+.......+.+++..+.++++|+..|++++...++.
T Consensus 121 ~~l~--~~~~~~~~l~~~l~~--~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~g~~~ 196 (215)
T 2vns_A 121 EHLQ--HRESNAEYLASLFPT--CTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGSLA 196 (215)
T ss_dssp HHHH--CSSCHHHHHHHHCTT--SEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHHHHHHTTCEEEECCSGG
T ss_pred cccc--ccccHHHHHHHHCCC--CeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHHHHHHHHcCCceEeecchh
Confidence 4210 113455777777752 23211 122222222323433333445677888999999999999999888863
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=127.37 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=108.9
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+|||+|||+ |+||+++|..|+++ | ++|++|+|+++.++.+ .+. +
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~-g-----~~V~~~~r~~~~~~~~---------~~~---------------g----- 55 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS-A-----HHLAAIEIAPEGRDRL---------QGM---------------G----- 55 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS-S-----SEEEEECCSHHHHHHH---------HHT---------------T-----
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHHHH---------Hhc---------------C-----
Confidence 579999999 99999999999988 7 8999999987654431 100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+..+ +..+++.++|+||+|||++.++++++++.+.+++ +++|+++++|++
T Consensus 56 --------------------------~~~~-~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~l~~---~~ivv~~s~~~~ 105 (286)
T 3c24_A 56 --------------------------IPLT-DGDGWIDEADVVVLALPDNIIEKVAEDIVPRVRP---GTIVLILDAAAP 105 (286)
T ss_dssp --------------------------CCCC-CSSGGGGTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEESCSHHH
T ss_pred --------------------------CCcC-CHHHHhcCCCEEEEcCCchHHHHHHHHHHHhCCC---CCEEEECCCCch
Confidence 1111 3446678999999999999999999999988876 688999998875
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhh--------hhccCce------EE-E-EeCChhHHHHHHHHHc
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASE--------IYNKEYA------NA-R-ICGAEKWRKPLAKFLR 265 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~e--------v~~g~~t------~~-~-~~~~~~~~~~l~~ll~ 265 (465)
.. .+.+..+ ..+ .+...|+++.+ +..|.++ .+ . .+.+++..+.++++|+
T Consensus 106 ~~------------~l~~~~~--~~~-~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~~l~~ 170 (286)
T 3c24_A 106 YA------------GVMPERA--DIT-YFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICE 170 (286)
T ss_dssp HH------------TCSCCCT--TSE-EEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHHHHHHHH
T ss_pred hH------------HHHhhhC--CCe-EEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHHHHHHHHHH
Confidence 43 1222111 112 34477877655 5666422 12 2 2456778899999999
Q ss_pred CCCC---eEEecC
Q 012349 266 RPHF---TVWDNG 275 (465)
Q Consensus 266 ~~g~---~v~~s~ 275 (465)
..|. +++..+
T Consensus 171 ~~G~~~~~~~~v~ 183 (286)
T 3c24_A 171 TMWSPVTRTHRVT 183 (286)
T ss_dssp HHTCSEEEEEECC
T ss_pred HhcCCcceEEEeC
Confidence 9998 666554
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-11 Score=123.84 Aligned_cols=162 Identities=16% Similarity=0.123 Sum_probs=108.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~--~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
.+|||+|||+|.||+++|..|.+. | + +|++|+|+++.++.. .+. +.
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~-G-----~~~~V~~~dr~~~~~~~a---------~~~---------------G~-- 79 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRS-G-----FKGKIYGYDINPESISKA---------VDL---------------GI-- 79 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHT-T-----CCSEEEEECSCHHHHHHH---------HHT---------------TS--
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-C-----CCCEEEEEECCHHHHHHH---------HHC---------------CC--
Confidence 358999999999999999999998 7 6 899999998654421 000 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHH-HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE-AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~e-al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
....++++++ ++.++|+||+|||++.+.++++++.+++++ +++|++++
T Consensus 80 ---------------------------~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~---~~iv~d~~- 128 (314)
T 3ggo_A 80 ---------------------------IDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE---DATVTDQG- 128 (314)
T ss_dssp ---------------------------CSEEESCTTGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCT---TCEEEECC-
T ss_pred ---------------------------cchhcCCHHHHhhccCCEEEEeCCHHHHHHHHHHHhhccCC---CcEEEECC-
Confidence 0134567777 789999999999999999999999998876 67777665
Q ss_pred cccccccccccCCCHHHHHHhHhCCC---CccE--EEEeCCchhh-hhhccCceEEEEe--CChhHHHHHHHHHcCCCCe
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVP---IENI--LYLGGPNIAS-EIYNKEYANARIC--GAEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~---~~~i--~vlsGP~~a~-ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~ 270 (465)
++... +.+.+.+.++.. .+|+ ...+||..+. ++..|.+..++.. .+++..+.++++|+..|.+
T Consensus 129 Svk~~---------~~~~~~~~l~~~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~ 199 (314)
T 3ggo_A 129 SVKGK---------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGV 199 (314)
T ss_dssp SCCTH---------HHHHHHHHHGGGEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCE
T ss_pred CCcHH---------HHHHHHHhcCCCEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCE
Confidence 32211 123344433211 1121 1223454444 2345655443332 3567889999999999988
Q ss_pred EEecC
Q 012349 271 VWDNG 275 (465)
Q Consensus 271 v~~s~ 275 (465)
++..+
T Consensus 200 v~~~~ 204 (314)
T 3ggo_A 200 VEYMS 204 (314)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 76654
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-11 Score=121.98 Aligned_cols=154 Identities=21% Similarity=0.201 Sum_probs=102.9
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++||+||| +|+||+++|..|++. | ++|++|+|+++.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~-G-----~~V~~~~~~~~~------------------------------------- 57 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRAS-G-----YPISILDREDWA------------------------------------- 57 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT-T-----CCEEEECTTCGG-------------------------------------
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhC-C-----CeEEEEECCccc-------------------------------------
Confidence 46899999 999999999999988 7 899999876520
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+..+++.++|+||+|||++.+.++++++.+++++ +++|+.+ .|+.
T Consensus 58 -------------------------------~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~---~~iv~~~-~svk 102 (298)
T 2pv7_A 58 -------------------------------VAESILANADVVIVSVPINLTLETIERLKPYLTE---NMLLADL-TSVK 102 (298)
T ss_dssp -------------------------------GHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TSEEEEC-CSCC
T ss_pred -------------------------------CHHHHhcCCCEEEEeCCHHHHHHHHHHHHhhcCC---CcEEEEC-CCCC
Confidence 1234567899999999999999999999988876 5655444 4543
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCChHHHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDLVTHE 281 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di~gve 281 (465)
.. ..+.+.+..+....+..-+.||.. +...+.++.++.+.+++..+.++++|+..|++++..++....+
T Consensus 103 ~~---------~~~~~~~~~~~~~v~~hP~~g~~~--~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~~d~ 171 (298)
T 2pv7_A 103 RE---------PLAKMLEVHTGAVLGLHPMFGADI--ASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQTNATEHDH 171 (298)
T ss_dssp HH---------HHHHHHHHCSSEEEEEEECSCTTC--SCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEEEECCHHHHHH
T ss_pred cH---------HHHHHHHhcCCCEEeeCCCCCCCc--hhhcCCeEEEecCCCHHHHHHHHHHHHHcCCEEEECCHHHHHH
Confidence 32 112333333311000011345543 2334554434433466778899999999999988776544444
Q ss_pred HHHH
Q 012349 282 VMGG 285 (465)
Q Consensus 282 ~~ga 285 (465)
+.+.
T Consensus 172 ~~a~ 175 (298)
T 2pv7_A 172 NMTY 175 (298)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-11 Score=119.66 Aligned_cols=182 Identities=14% Similarity=0.156 Sum_probs=115.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++||+|||+|.||+++|..|+.+ | ++|++|+++++.+++... .++... ..+.+... .+.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~-G-----~~V~l~d~~~~~~~~~~~-----~i~~~~---------~~~~~~g~-~~~ 62 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH-G-----FAVTAYDINTDALDAAKK-----RFEGLA---------AVYEKEVA-GAA 62 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHHHHH-----HHHHHH---------HHHHHHST-TCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCHHHHHHHHH-----HHHHHH---------HHHHHhcc-cCC
Confidence 47999999999999999999999 8 899999999887665322 111110 00110000 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.... ++. ...+..++|+++++.++|+||+|||++ ..+++++++.+++++ ++++++.+.++
T Consensus 63 ~~~~--~~~-------------~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~---~~il~s~tS~~ 124 (283)
T 4e12_A 63 DGAA--QKA-------------LGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPA---KTIFATNSSTL 124 (283)
T ss_dssp TTHH--HHH-------------HHHCEEESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred HHHH--HHH-------------HcCeEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCC---CcEEEECCCCC
Confidence 0000 000 013567899988899999999999998 889999999998887 78888888887
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEec-CCh
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDN-GDL 277 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s-~Di 277 (465)
... .+.+.++.+ .++. -..|..+. ..+....++.+ .+++..+.++++++..+...... .|.
T Consensus 125 ~~~------------~la~~~~~~-~~~i-g~h~~~p~--~~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~ 188 (283)
T 4e12_A 125 LPS------------DLVGYTGRG-DKFL-ALHFANHV--WVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEK 188 (283)
T ss_dssp CHH------------HHHHHHSCG-GGEE-EEEECSST--TTSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCC
T ss_pred CHH------------HHHhhcCCC-cceE-EEccCCCc--ccCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 543 345555433 2321 11222221 22233333333 25677889999999888776655 564
Q ss_pred HH
Q 012349 278 VT 279 (465)
Q Consensus 278 ~g 279 (465)
-|
T Consensus 189 ~g 190 (283)
T 4e12_A 189 AG 190 (283)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-11 Score=127.13 Aligned_cols=177 Identities=10% Similarity=0.064 Sum_probs=113.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++||+|||+|.||+.||..|+++ | ++|++|+++++.....-.+.+....+.+ .+.....
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~a-G-----~~V~l~D~~~e~a~~~i~~~l~~~~~~G------------~l~~~~~--- 112 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLA-G-----IETFLVVRNEQRCKQELEVMYAREKSFK------------RLNDKRI--- 112 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHHHHHHHHHHTT------------SCCHHHH---
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECcHHHHHHHHHHHHHHHHHcC------------CCCHHHH---
Confidence 47999999999999999999999 8 9999999998732210011111111111 1110000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+ .+ +.++++++|++ ++.+||+||+|||.+ ..+++++++.+++++ +++++|.+.++
T Consensus 113 ~-~~------------------~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~---~aIlasnTSsl 169 (460)
T 3k6j_A 113 E-KI------------------NANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKS---TCIFGTNTSSL 169 (460)
T ss_dssp H-HH------------------HTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCSSS
T ss_pred H-HH------------------hcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CCEEEecCCCh
Confidence 0 00 12578889985 689999999999975 567889999999887 78888888777
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
... .+.+.+..+ .++.. .-|-.+.. ......++.+ .+++..+.+.++++..|..+....|.-
T Consensus 170 ~i~------------~ia~~~~~p-~r~iG-~HffnPv~--~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~p 233 (460)
T 3k6j_A 170 DLN------------EISSVLRDP-SNLVG-IHFFNPAN--VIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCK 233 (460)
T ss_dssp CHH------------HHHTTSSSG-GGEEE-EECCSSTT--TCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCC
T ss_pred hHH------------HHHHhccCC-cceEE-EEecchhh--hCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 653 355555433 22221 11211221 2222333333 367788999999999998888778865
Q ss_pred H
Q 012349 279 T 279 (465)
Q Consensus 279 g 279 (465)
|
T Consensus 234 G 234 (460)
T 3k6j_A 234 S 234 (460)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-13 Score=128.63 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=108.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.|||+|||+|+||+++|..|.+. | ++|++|+|+++ .+. +..
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~-G-----~~V~~~~r~~~-~~~--------------------------~~~------ 59 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQC-G-----YSVVFGSRNPQ-VSS--------------------------LLP------ 59 (201)
Confidence 37899999999999999999988 7 89999999864 221 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
..+.++ ++.++++++|+||++||++.+++++ ++.+.. + +++||++++|+..
T Consensus 60 -----------------------~g~~~~-~~~~~~~~aDvVilav~~~~~~~v~-~l~~~~-~---~~ivI~~~~G~~~ 110 (201)
T 2yjz_A 60 -----------------------RGAEVL-CYSEAASRSDVIVLAVHREHYDFLA-ELADSL-K---GRVLIDVSNNQKM 110 (201)
Confidence 012223 4556778899999999999998887 565543 3 5789999999963
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhc-cCc----eEEEEeCChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYN-KEY----ANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~-g~~----t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
... ...-.+.+.+.++. . ..+...|+++..... |.. +.++.+.+++..+.++++|+..|++++...++
T Consensus 111 ~~~----~~~~~~~l~~~~~~--~-~vvra~~n~~a~~~~~g~l~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~G~l 183 (201)
T 2yjz_A 111 NQY----PESNAEYLAQLVPG--A-HVVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLGLTPLDQGSL 183 (201)
Confidence 100 00011445555542 1 245677887776554 331 22334445667788999999999988777665
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-12 Score=127.65 Aligned_cols=178 Identities=13% Similarity=0.042 Sum_probs=98.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+|||+|||+|+||++++..|+++ ++| .+|+|+++.++++ ... +
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~~~~~~~~---------~~~-------------~------- 45 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRSIDRARNL---------AEV-------------Y------- 45 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----------CCCEECSSHHHHHHH---------HHH-------------T-------
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHH---------HHH-------------c-------
Confidence 47999999999999999988754 577 5999987654431 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+. .+++++++++++|+||+|||++.+.++++++. .+ +++||+++.++.
T Consensus 46 -------------------------g~-~~~~~~~~~~~~DvVilav~~~~~~~v~~~l~---~~---~~ivi~~s~~~~ 93 (276)
T 2i76_A 46 -------------------------GG-KAATLEKHPELNGVVFVIVPDRYIKTVANHLN---LG---DAVLVHCSGFLS 93 (276)
T ss_dssp -------------------------CC-CCCSSCCCCC---CEEECSCTTTHHHHHTTTC---CS---SCCEEECCSSSC
T ss_pred -------------------------CC-ccCCHHHHHhcCCEEEEeCChHHHHHHHHHhc---cC---CCEEEECCCCCc
Confidence 11 23444555678999999999999999988775 33 578888886765
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecC--ChHH
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNG--DLVT 279 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~--Di~g 279 (465)
.+ .+++......+++..++||....+...+.+. .++.+++..+.++++|+..|.+++... |...
T Consensus 94 ~~------------~l~~~~~~~~~p~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~ 159 (276)
T 2i76_A 94 SE------------IFKKSGRASIHPNFSFSSLEKALEMKDQIVF--GLEGDERGLPIVKKIAEEISGKYFVIPSEKKKA 159 (276)
T ss_dssp GG------------GGCSSSEEEEEECSCC--CTTGGGCGGGCCE--EECCCTTTHHHHHHHHHHHCSCEEECCGGGHHH
T ss_pred HH------------HHHHhhccccchhhhcCCCchhHHHhCCCeE--EEEeChHHHHHHHHHHHHhCCCEEEECHHHHHH
Confidence 43 1222111001122234554443333334322 334455557778888887775544433 2211
Q ss_pred -----HHHHHHHHHHHHHHHHhhhcccC
Q 012349 280 -----HEVMGGLKNVYAIGAGMVAALTN 302 (465)
Q Consensus 280 -----ve~~galKNviAia~Gi~~gl~~ 302 (465)
.-.+..+.++++.+..+....++
T Consensus 160 ~~~~~~l~~n~~~~~~~~a~~~~~~~Gl 187 (276)
T 2i76_A 160 YHLAAVIASNFPVALAYLSKRIYTLLGL 187 (276)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22233455666666666655554
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=122.87 Aligned_cols=180 Identities=15% Similarity=0.139 Sum_probs=115.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||++||..|+++ | ++|++|+++++.+++... .+...+++.. +.. .+....
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a-G-----~~V~l~D~~~e~l~~~~~-~i~~~l~~~~-------~~g-~~~~~~---- 65 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH-G-----HQVLLYDISAEALTRAID-GIHARLNSRV-------TRG-KLTAET---- 65 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHHHH-HHHHHHHTTT-------TTT-SSCHHH----
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHH-HHHHHHHHHH-------HcC-CCCHHH----
Confidence 47999999999999999999998 8 899999999987765322 1111111100 000 010000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+++ +.+++.++|++ ++++||+||+|||++ ..+++++++.+++++ +++++|.+.++
T Consensus 66 -----~~~~-------------~~~i~~~~~~~-~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~---~~IlasntSti 123 (483)
T 3mog_A 66 -----CERT-------------LKRLIPVTDIH-ALAAADLVIEAASERLEVKKALFAQLAEVCPP---QTLLTTNTSSI 123 (483)
T ss_dssp -----HHHH-------------HHTEEEECCGG-GGGGCSEEEECCCCCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred -----HHHH-------------HhceeEeCCHH-HhcCCCEEEEcCCCcHHHHHHHHHHHHHhhcc---CcEEEecCCCC
Confidence 0000 02577888885 689999999999987 567899999998887 78888888888
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
... .+.+.+..+ .++ +-..|..+..+. ....++.+ .+++..+.+.++++..|..+....|.-
T Consensus 124 ~i~------------~ia~~~~~p-~~~-ig~hf~~Pa~v~--~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~ 187 (483)
T 3mog_A 124 SIT------------AIAAEIKNP-ERV-AGLHFFNPAPVM--KLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTP 187 (483)
T ss_dssp CHH------------HHTTTSSSG-GGE-EEEEECSSTTTC--CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CHH------------HHHHHccCc-cce-EEeeecChhhhC--CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 654 355545432 222 122233322322 22333333 266788999999999888777666764
Q ss_pred H
Q 012349 279 T 279 (465)
Q Consensus 279 g 279 (465)
|
T Consensus 188 G 188 (483)
T 3mog_A 188 G 188 (483)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-10 Score=127.00 Aligned_cols=178 Identities=15% Similarity=0.169 Sum_probs=112.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++||+|||+|.||+.||..|+++ | ++|++|+++++.+++.... +.+.+.+.. +. .+++...
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a-G-----~~V~l~D~~~~~~~~~~~~-i~~~l~~~~-------~~-G~~~~~~---- 372 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS-N-----YPVILKEVNEKFLEAGIGR-VKANLQSRV-------RK-GSMSQEK---- 372 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSHHHHHHHHHH-HHHHHHHTT-------C-----CTTH----
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHHH-HHHHHHHHH-------hc-CCCCHHH----
Confidence 57899999999999999999998 8 9999999999876653211 111111000 00 0111000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +..+..++.++|+ +++.+||+||+|||.+. .++++.++.+++++ ++++++.++++
T Consensus 373 ---~---------------~~~~~~i~~~~d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~---~~IlasntStl 430 (725)
T 2wtb_A 373 ---F---------------EKTMSLLKGSLDY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQ---HCILASNTSTI 430 (725)
T ss_dssp ---H---------------HHTTTSEEEESSS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred ---H---------------HHHhcceEEeCCH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCC---CcEEEeCCCCC
Confidence 0 0001257788888 57899999999999875 67888999998887 78888888887
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEE--EEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~--vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
+.. + +.+.+..+ .++. ....|.. ......++.+ .+++..+.+..+++..|..+.+..|
T Consensus 431 ~i~-----------~-la~~~~~p-~~~iG~hf~~P~~-----~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d 492 (725)
T 2wtb_A 431 DLN-----------K-IGERTKSQ-DRIVGAHFFSPAH-----IMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGN 492 (725)
T ss_dssp CHH-----------H-HTTTCSCT-TTEEEEEECSSTT-----TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CHH-----------H-HHHHhcCC-CCEEEecCCCCcc-----cCceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECC
Confidence 654 2 44444322 1221 1122321 1122223333 2667788999999988887777667
Q ss_pred hHH
Q 012349 277 LVT 279 (465)
Q Consensus 277 i~g 279 (465)
..|
T Consensus 493 ~~G 495 (725)
T 2wtb_A 493 CTG 495 (725)
T ss_dssp STT
T ss_pred Ccc
Confidence 544
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-10 Score=117.02 Aligned_cols=181 Identities=17% Similarity=0.191 Sum_probs=118.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|.+. | ++|++|+|+++.... ....
T Consensus 17 ~~I~IIG~G~mG~alA~~L~~~-G-----~~V~~~~~~~~~~~~--------~a~~------------------------ 58 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLKDS-G-----VDVTVGLRSGSATVA--------KAEA------------------------ 58 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECCTTCHHHH--------HHHH------------------------
T ss_pred CEEEEECchHHHHHHHHHHHHC-c-----CEEEEEECChHHHHH--------HHHH------------------------
Confidence 6899999999999999999988 7 889999998643111 0000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHH-HHHHhhhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.++.++ ++++++.++|+||+|||++...++++ ++.+++++ +++|+++ +|+..
T Consensus 59 ----------------------~G~~~~-~~~e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~---~~ivi~~-~gv~~ 111 (338)
T 1np3_A 59 ----------------------HGLKVA-DVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKK---GATLAFA-HGFSI 111 (338)
T ss_dssp ----------------------TTCEEE-CHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCT---TCEEEES-CCHHH
T ss_pred ----------------------CCCEEc-cHHHHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCC---CCEEEEc-CCchh
Confidence 023344 77788899999999999999999998 99988876 6777755 67543
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEE--EEeCCchhh-hhh---ccCceEEEEe--CChhHHHHHHHHHcCCCC-e--E
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIAS-EIY---NKEYANARIC--GAEKWRKPLAKFLRRPHF-T--V 271 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~--vlsGP~~a~-ev~---~g~~t~~~~~--~~~~~~~~l~~ll~~~g~-~--v 271 (465)
. +.+........+. .-+||+++. ++. .|.+..++.. .+.+..+.+.++++..|. + +
T Consensus 112 ~-------------~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv 178 (338)
T 1np3_A 112 H-------------YNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTGI 178 (338)
T ss_dssp H-------------TTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHHTTHHHHCE
T ss_pred H-------------HHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHHHHHHcCCCccce
Confidence 1 1121111111111 125676653 333 3776654542 345566778888888787 4 4
Q ss_pred Eec-------CChHHHH--HHHHHHHHHHHHHHhhhcccC
Q 012349 272 WDN-------GDLVTHE--VMGGLKNVYAIGAGMVAALTN 302 (465)
Q Consensus 272 ~~s-------~Di~gve--~~galKNviAia~Gi~~gl~~ 302 (465)
... .|..+.. +||.+.++++.+...+...++
T Consensus 179 ~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl 218 (338)
T 1np3_A 179 IETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGY 218 (338)
T ss_dssp EECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTC
T ss_pred EeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCC
Confidence 333 2344433 688899998887755544444
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.5e-10 Score=114.85 Aligned_cols=182 Identities=14% Similarity=0.142 Sum_probs=117.0
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
....||+|||+|.||+.||..++.+ | ++|++|+++++.+++... .+...+... .+.. .++.
T Consensus 4 p~~~~VaViGaG~MG~giA~~~a~~-G-----~~V~l~D~~~~~l~~~~~-~i~~~l~~~-------~~~g-~~~~---- 64 (319)
T 3ado_A 4 PAAGDVLIVGSGLVGRSWAMLFASG-G-----FRVKLYDIEPRQITGALE-NIRKEMKSL-------QQSG-SLKG---- 64 (319)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHHHH-HHHHHHHHH-------HHTT-CCCS----
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHH-HHHHHHHHH-------HHcC-CCCC----
Confidence 3457999999999999999999999 8 899999999887664221 111111110 0000 0110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
.+..++. +..+..++|+++++.+||+||.|||.. ..++++.+|.+++++ ++++.|.|.
T Consensus 65 ----~~~~~~~-------------l~~i~~~~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~---~aIlaSNTS 124 (319)
T 3ado_A 65 ----SLSAEEQ-------------LSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDD---RVVLSSSSS 124 (319)
T ss_dssp ----SSCHHHH-------------HHTEEEECCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCS---SSEEEECCS
T ss_pred ----ccCHHHH-------------HhhcccccchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhh---cceeehhhh
Confidence 0000000 125788999999999999999999976 678999999999987 799989998
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeE-Ee
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTV-WD 273 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v-~~ 273 (465)
|+... + |.+.+..| .++... ..|-+.. ....++.+ .+++..+.+.+++...|... .+
T Consensus 125 sl~is-----------~-ia~~~~~p-~r~ig~HffNP~~~m-----~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v 186 (319)
T 3ado_A 125 CLLPS-----------K-LFTGLAHV-KQCIVAHPVNPPYYI-----PLVELVPHPETSPATVDRTHALMRKIGQSPVRV 186 (319)
T ss_dssp SCCHH-----------H-HHTTCTTG-GGEEEEEECSSTTTC-----CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred hccch-----------h-hhhhccCC-CcEEEecCCCCcccc-----chHHhcCCCCCcHHHHHHHHHHHHHhCCccCCc
Confidence 88764 3 55555443 343322 2232221 12223333 35677888889998888665 46
Q ss_pred cCChHH
Q 012349 274 NGDLVT 279 (465)
Q Consensus 274 s~Di~g 279 (465)
..|.-|
T Consensus 187 ~kd~pG 192 (319)
T 3ado_A 187 LKEIDG 192 (319)
T ss_dssp SSCCTT
T ss_pred CCCCCC
Confidence 667654
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-10 Score=111.40 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=103.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||+|.||+.||..|+ + | ++|++|+++++.+++.... +...
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a-G-----~~V~v~d~~~~~~~~~~~~----------------------l~~~------ 57 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S-K-----HEVVLQDVSEKALEAAREQ----------------------IPEE------ 57 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T-T-----SEEEEECSCHHHHHHHHHH----------------------SCGG------
T ss_pred CeEEEEeeCHHHHHHHHHHH-c-C-----CEEEEEECCHHHHHHHHHH----------------------HHHH------
Confidence 79999999999999999999 8 8 8999999998766542110 1100
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
. +..++.++|+++ +.+||+||.|+|... ...++.++.++ + ++++++.+.++.
T Consensus 58 -~-------------------~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~l~~~l~~~--~---~~IlasntSti~ 111 (293)
T 1zej_A 58 -L-------------------LSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVEVLREVERL--T---NAPLCSNTSVIS 111 (293)
T ss_dssp -G-------------------GGGEEEESSCTT-GGGCSEEEECCCSCHHHHHHHHHHHHTT--C---CSCEEECCSSSC
T ss_pred -H-------------------hCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHHHHHHHhcC--C---CCEEEEECCCcC
Confidence 0 014667788865 799999999999875 56677888776 4 677777776665
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEE-EEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENIL-YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~-vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
+. .+.+.+..+..-+. -...|. ..+....++.+ .+++..+++..+++..|-.+....|.
T Consensus 112 ~~------------~~a~~~~~~~r~~G~Hf~~Pv-----~~~~lveiv~g~~t~~~~~~~~~~l~~~lGk~~v~v~d~ 173 (293)
T 1zej_A 112 VD------------DIAERLDSPSRFLGVHWMNPP-----HVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQ 173 (293)
T ss_dssp HH------------HHHTTSSCGGGEEEEEECSST-----TTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HH------------HHHHHhhcccceEeEEecCcc-----ccCCEEEEECCCCCCHHHHHHHHHHHHHcCCeEEEeccc
Confidence 53 24443432211111 112232 22333333344 36788899999999888877666664
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-10 Score=125.43 Aligned_cols=181 Identities=12% Similarity=0.117 Sum_probs=111.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..+||+|||+|.||+.||..|+++ | ++|++|+++++.+++... .+.+.+++.. +. -.+....
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~a-G-----~~V~l~D~~~~~~~~~~~-~i~~~l~~~~-------~~-G~~~~~~--- 374 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASK-G-----TPILMKDINEHGIEQGLA-EAAKLLVGRV-------DK-GRMTPAK--- 374 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHH-HHHHHHHHHH-------TT-TSSCHHH---
T ss_pred cCCEEEEECCChhhHHHHHHHHhC-C-----CEEEEEECCHHHHHHHHH-HHHHHHHHHH-------hc-CCCCHHH---
Confidence 357899999999999999999999 8 899999999877654211 0111111000 00 0011000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--HHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE--TKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~--l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+++ +..+++++|+ +++.+||+||+|||.+. .++++.++.+++++ +++++|.+.+
T Consensus 375 ------~~~~-------------~~~i~~~~d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~---~~IlasntSt 431 (715)
T 1wdk_A 375 ------MAEV-------------LNGIRPTLSY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVRE---DAILASNTST 431 (715)
T ss_dssp ------HHHH-------------HHHEEEESSS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCSS
T ss_pred ------HHHH-------------hcCeEEECCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CeEEEeCCCC
Confidence 0000 0136778888 67899999999999764 67888999988876 7888888888
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
++.. .+.+.+..+ .++... -|-.+.. ......++.+. +++..+.+.++++..|..+.+..|.
T Consensus 432 l~i~------------~la~~~~~~-~~~ig~-hf~~P~~--~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~ 495 (715)
T 1wdk_A 432 ISIS------------LLAKALKRP-ENFVGM-HFFNPVH--MMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDC 495 (715)
T ss_dssp SCHH------------HHGGGCSCG-GGEEEE-ECCSSTT--TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCHH------------HHHHHhcCc-cceEEE-EccCCcc--cCceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCC
Confidence 7654 244544432 222111 1111111 12223333332 6778899999999888877776675
Q ss_pred HH
Q 012349 278 VT 279 (465)
Q Consensus 278 ~g 279 (465)
.|
T Consensus 496 ~G 497 (715)
T 1wdk_A 496 PG 497 (715)
T ss_dssp TT
T ss_pred CC
Confidence 44
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-09 Score=113.80 Aligned_cols=176 Identities=12% Similarity=0.100 Sum_probs=109.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++||+|||+|.||+.||..|+++ | ++|++|+++++.++..... +...+.. ++.. +.+.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~-G-----~~V~l~D~~~~~~~~~~~~-i~~~l~~-------------~~~~--g~~~ 94 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV-G-----ISVVAVESDPKQLDAAKKI-ITFTLEK-------------EASR--AHQN 94 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSHHHHHHHHHH-HHHHHHH-------------HHHH--HHHT
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHHH-HHHHHHH-------------HHHc--CCCC
Confidence 57899999999999999999998 8 8999999998776653221 0000000 0000 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.... ......+++|+ +++.+||+||+|||.+ ..+++++++.+++++ ++++++.++++
T Consensus 95 ~~~~-----------------~~~~~~i~~~~-~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~---~~ii~snTs~~ 153 (463)
T 1zcj_A 95 GQAS-----------------AKPKLRFSSST-KELSTVDLVVEAVFEDMNLKKKVFAELSALCKP---GAFLCTNTSAL 153 (463)
T ss_dssp TCCC-----------------CCCCEEEESCG-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred HHHH-----------------HHHHhhhcCCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCC---CeEEEeCCCCc
Confidence 0000 00123457788 5689999999999986 367889999998877 78888878776
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEE--EEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENIL--YLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~--vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
... .+.+.+..+ .++. ....|.. ......++.+ .+++..+.+..+++..|..+.+..|
T Consensus 154 ~~~------------~la~~~~~~-~~~ig~hf~~P~~-----~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~ 215 (463)
T 1zcj_A 154 NVD------------DIASSTDRP-QLVIGTHFFSPAH-----VMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGN 215 (463)
T ss_dssp CHH------------HHHTTSSCG-GGEEEEEECSSTT-----TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCC
T ss_pred CHH------------HHHHHhcCC-cceEEeecCCCcc-----cceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECC
Confidence 543 355544432 2221 1123321 1222333332 4677788889998888877777667
Q ss_pred hHH
Q 012349 277 LVT 279 (465)
Q Consensus 277 i~g 279 (465)
..|
T Consensus 216 ~~g 218 (463)
T 1zcj_A 216 CYG 218 (463)
T ss_dssp STT
T ss_pred Ccc
Confidence 544
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-10 Score=114.48 Aligned_cols=159 Identities=9% Similarity=0.068 Sum_probs=101.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..+||+|||+|.||++||..|.++ | ++|++|+|+++.++.. .+.
T Consensus 7 ~~~kIgIIG~G~mG~slA~~L~~~-G-----~~V~~~dr~~~~~~~a---------~~~--------------------- 50 (341)
T 3ktd_A 7 ISRPVCILGLGLIGGSLLRDLHAA-N-----HSVFGYNRSRSGAKSA---------VDE--------------------- 50 (341)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSCHHHHHHH---------HHT---------------------
T ss_pred CCCEEEEEeecHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHHH---------HHc---------------------
Confidence 357999999999999999999998 7 8999999998654421 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc----CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW----DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~----~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
++..++++++++. ++|+||+|||++.+.++++++.++ ++ +++|+.++
T Consensus 51 -------------------------G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl~~l~~~-~~---~~iv~Dv~ 101 (341)
T 3ktd_A 51 -------------------------GFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLDAVHTH-AP---NNGFTDVV 101 (341)
T ss_dssp -------------------------TCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHHHHHHHH-CT---TCCEEECC
T ss_pred -------------------------CCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHHHHHHcc-CC---CCEEEEcC
Confidence 1234566666554 579999999999999999999886 54 56665443
Q ss_pred ccccccccccccCCCHHHHHHhHhCC----CCccEE--EEeCCchhh-hhhccCceEEEEe--CChh--------HHHHH
Q 012349 198 KGVEAELEAVPRIITPTQMINRATGV----PIENIL--YLGGPNIAS-EIYNKEYANARIC--GAEK--------WRKPL 260 (465)
Q Consensus 198 kGi~~~~~~~~~~~~~se~I~e~lg~----~~~~i~--vlsGP~~a~-ev~~g~~t~~~~~--~~~~--------~~~~l 260 (465)
++... +.+.+.+.+.. +.+|+. ..+||..+. ++..|.+..++.. .+++ ..+.+
T Consensus 102 -Svk~~---------i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v 171 (341)
T 3ktd_A 102 -SVKTA---------VYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDV 171 (341)
T ss_dssp -SCSHH---------HHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHH
T ss_pred -CCChH---------HHHHHHHhCCCCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHHHHH
Confidence 33221 11233332210 012211 124444433 3455655544332 2345 67899
Q ss_pred HHHHcCCCCeEEecC
Q 012349 261 AKFLRRPHFTVWDNG 275 (465)
Q Consensus 261 ~~ll~~~g~~v~~s~ 275 (465)
+++|+..|.+++..+
T Consensus 172 ~~l~~~~Ga~v~~~~ 186 (341)
T 3ktd_A 172 VQMALAVGAEVVPSR 186 (341)
T ss_dssp HHHHHHTTCEEEECC
T ss_pred HHHHHHcCCEEEEeC
Confidence 999999997776543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-09 Score=105.91 Aligned_cols=107 Identities=17% Similarity=0.287 Sum_probs=74.1
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhhhhhhhhhhHHHHh-chhhhHHhhhhcccccchh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVIN-SREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~--~V~l~~r~~~~~~~i~~~~l~~~i~-~~~~~~~~~~~n~~~l~~~ 117 (465)
.++|||+|||+|+||+++|..|+.+ | + +|++|++++++++.. .++ .++ . .+..
T Consensus 5 ~~~mkI~IiGaG~vG~~~a~~l~~~-g-----~~~~V~l~d~~~~~~~~~-------~~~~~~~--------~-~~~~-- 60 (319)
T 1lld_A 5 VKPTKLAVIGAGAVGSTLAFAAAQR-G-----IAREIVLEDIAKERVEAE-------VLDMQHG--------S-SFYP-- 60 (319)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECSSHHHHHHH-------HHHHHHT--------G-GGST--
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-C-----CCCEEEEEeCChhHHHHH-------HHHHHhh--------h-hhcC--
Confidence 3468999999999999999999998 7 6 999999987554310 011 000 0 0100
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchH----------------HHHHHHHH
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET----------------KEVFEEIS 181 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l----------------~~vl~~l~ 181 (465)
. ..+..+++. +++.++|+||++++.... +++++++.
T Consensus 61 -----~----------------------~~v~~~~~~-~~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~ 112 (319)
T 1lld_A 61 -----T----------------------VSIDGSDDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLV 112 (319)
T ss_dssp -----T----------------------CEEEEESCG-GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----C----------------------eEEEeCCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 134455565 468899999999965443 37888888
Q ss_pred HhhhccCCCCEEEEeecccccc
Q 012349 182 RYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 182 ~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
++ .+ +++|++++||++..
T Consensus 113 ~~-~~---~~~vi~~~Np~~~~ 130 (319)
T 1lld_A 113 KV-AP---NAIYMLITNPVDIA 130 (319)
T ss_dssp HH-CT---TSEEEECCSSHHHH
T ss_pred Hh-CC---CceEEEecCchHHH
Confidence 75 44 68899999999765
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=7.5e-09 Score=104.49 Aligned_cols=106 Identities=12% Similarity=0.173 Sum_probs=75.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+|||+|||+|.||+++|..|+.+ | + +|.+|+++++.++.... . +... + .++.
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~-g-----~~~V~L~D~~~~~~~~~~~-~----l~~~---------~-~~~~------ 61 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALR-E-----LADVVLYDVVKGMPEGKAL-D----LSHV---------T-SVVD------ 61 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSSSHHHHHHH-H----HHHH---------H-HHTT------
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECChhHHHHHHH-H----HHhh---------h-hccC------
Confidence 58999999999999999999998 7 6 89999999876653110 0 1100 0 0111
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Ccc-------------------hHHHHHHHH
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST-------------------ETKEVFEEI 180 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps~-------------------~l~~vl~~l 180 (465)
. ...+.+|+|+++++++||+||+++ |.. .++++++++
T Consensus 62 ----~------------------~~~i~~t~d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i 119 (331)
T 1pzg_A 62 ----T------------------NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNI 119 (331)
T ss_dssp ----C------------------CCCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHH
T ss_pred ----C------------------CCEEEEeCCHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 025778899988899999999998 532 167788888
Q ss_pred HHhhhccCCCCEEEEeecccc
Q 012349 181 SRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 181 ~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.++.+ +.+++..+|-.+
T Consensus 120 ~~~~p----~a~vi~~tNP~~ 136 (331)
T 1pzg_A 120 KKYCP----KTFIIVVTNPLD 136 (331)
T ss_dssp HHHCT----TCEEEECCSSHH
T ss_pred HHHCC----CcEEEEEcCchH
Confidence 87763 577777776543
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=102.37 Aligned_cols=107 Identities=10% Similarity=0.174 Sum_probs=76.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
++|||+|||+|+||+++|..|+.+ | + +|++|+++++.++... ++-.+ .+. +..
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~-g-----~~~V~l~D~~~~~~~~~~-------~~l~~-------~~~-~~~----- 56 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKD-N-----LADVVLFDIAEGIPQGKA-------LDITH-------SMV-MFG----- 56 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSSSSHHHHHH-------HHHHH-------HHH-HHT-----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CceEEEEeCCchHHHHHH-------HHHHh-------hhh-hcC-----
Confidence 358999999999999999999999 7 6 8999999987655311 00000 000 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--------------C--cchHHHHHHHHHHhh
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--------------P--STETKEVFEEISRYW 184 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--------------p--s~~l~~vl~~l~~~l 184 (465)
. ...+..++|. +++++||+||+++ | ...++++++++.++.
T Consensus 57 -----~------------------~~~i~~t~d~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~ 112 (317)
T 2ewd_A 57 -----S------------------TSKVIGTDDY-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC 112 (317)
T ss_dssp -----C------------------CCCEEEESCG-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC
T ss_pred -----C------------------CcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC
Confidence 0 0146777888 6789999999999 3 235788888888875
Q ss_pred hccCCCCEEEEeeccccc
Q 012349 185 KERITVPVIISLAKGVEA 202 (465)
Q Consensus 185 ~~~~~~~ivIs~~kGi~~ 202 (465)
+ +++++.++|....
T Consensus 113 ~----~~iii~~sNp~~~ 126 (317)
T 2ewd_A 113 P----NAFVICITNPLDV 126 (317)
T ss_dssp T----TSEEEECCSSHHH
T ss_pred C----CcEEEEeCChHHH
Confidence 4 5888899987654
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-08 Score=106.79 Aligned_cols=154 Identities=14% Similarity=0.078 Sum_probs=103.2
Q ss_pred ceEEEECccHHHHHHHHHHHHh-----cCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDS-----YGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~-----~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
+||+|||.|+||.++|..|.++ .| ++|+++.++.....+ .... .+
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G-----~~ViVg~r~~sks~e--------~A~e---------------~G-- 104 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSD-----IVVKIGLRKGSKSFD--------EARA---------------AG-- 104 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCC-----CEEEEEECTTCSCHH--------HHHH---------------TT--
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCC-----CEEEEEeCCchhhHH--------HHHH---------------CC--
Confidence 6999999999999999999875 14 688877765432110 0000 00
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
+.. ......++.+++++||+||++||.+...+++++|.+++++ +++ |+++.
T Consensus 105 -----------------~~v--------~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~---GaI-Ls~Aa 155 (525)
T 3fr7_A 105 -----------------FTE--------ESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKP---NSI-LGLSH 155 (525)
T ss_dssp -----------------CCT--------TTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCT---TCE-EEESS
T ss_pred -----------------CEE--------ecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCC---CCe-EEEeC
Confidence 000 0001246778899999999999999888999999999987 565 78999
Q ss_pred cccccccccccCCCHHHHHHh---HhCCCCccEEEEeCCchhhhh-------h-----ccCceEEEEeC--ChhHHHHHH
Q 012349 199 GVEAELEAVPRIITPTQMINR---ATGVPIENILYLGGPNIASEI-------Y-----NKEYANARICG--AEKWRKPLA 261 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e---~lg~~~~~i~vlsGP~~a~ev-------~-----~g~~t~~~~~~--~~~~~~~l~ 261 (465)
|+... .+++ .++. .--+++.+||.+..+ + .|.++.+.+.. +.+..+.+.
T Consensus 156 Gf~I~------------~le~~~i~~p~--dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~al 221 (525)
T 3fr7_A 156 GFLLG------------HLQSAGLDFPK--NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVAL 221 (525)
T ss_dssp SHHHH------------HHHHTTCCCCT--TSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHH
T ss_pred CCCHH------------HHhhhcccCCC--CCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHH
Confidence 98764 3443 2322 113678899888776 3 56665555433 335667777
Q ss_pred HHHcCCCCe
Q 012349 262 KFLRRPHFT 270 (465)
Q Consensus 262 ~ll~~~g~~ 270 (465)
.+|...|..
T Consensus 222 ala~aiG~~ 230 (525)
T 3fr7_A 222 GWSVALGSP 230 (525)
T ss_dssp HHHHHTTCS
T ss_pred HHHHHCCCC
Confidence 788877754
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-08 Score=101.24 Aligned_cols=106 Identities=18% Similarity=0.167 Sum_probs=74.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||||+|||+|+||+++|..|+.+ |. .++|++|+++++.++.+.. -+.. . + .+++
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~-g~---~~~V~l~d~~~~~~~~~~~-----~l~~-~--------~-~~~~------- 54 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ-GV---ADDYVFIDANEAKVKADQI-----DFQD-A--------M-ANLE------- 54 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-TC---CSEEEEECSSHHHHHHHHH-----HHHH-H--------G-GGSS-------
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CC---CCEEEEEcCCHHHHHHHHH-----HHHh-h--------h-hhcC-------
Confidence 37999999999999999999998 63 1689999999876553211 0110 0 0 0110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEE-ecCHHHHhcCCCEEEEecCcch--------------------HHHHHHHHH
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQEAVWDADIVINGLPSTE--------------------TKEVFEEIS 181 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~dl~eal~~aDiVIlaVps~~--------------------l~~vl~~l~ 181 (465)
..+.+ ++|+ +++.++|+||+++|+.. ++++++++.
T Consensus 55 -----------------------~~~~~~~~d~-~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~ 110 (309)
T 1hyh_A 55 -----------------------AHGNIVINDW-AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLK 110 (309)
T ss_dssp -----------------------SCCEEEESCG-GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCeEEEeCCH-HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 02333 5677 67899999999999866 477888887
Q ss_pred HhhhccCCCCEEEEeeccccc
Q 012349 182 RYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 182 ~~l~~~~~~~ivIs~~kGi~~ 202 (465)
++.+ +++++.++|+++.
T Consensus 111 ~~~~----~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 111 ESGF----HGVLVVISNPVDV 127 (309)
T ss_dssp HTTC----CSEEEECSSSHHH
T ss_pred HHCC----CcEEEEEcCcHHH
Confidence 7653 5778889998865
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-08 Score=99.80 Aligned_cols=106 Identities=17% Similarity=0.229 Sum_probs=74.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
++|||+|||+|.||+++|..|+.+ | + +|.+|+++++.++.... . +... +. ++.
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~-g-----~~~V~L~Di~~~~l~~~~~-~----l~~~---------~~-~~~----- 66 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQK-D-----LGDVYMFDIIEGVPQGKAL-D----LNHC---------MA-LIG----- 66 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSTTHHHHHHH-H----HHHH---------HH-HHT-----
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECCHHHHHHHHH-H----HHhH---------hh-ccC-----
Confidence 347999999999999999999998 7 6 89999999876653110 0 1110 00 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------chHHHHHHHHHHhh
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYW 184 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps--------------~~l~~vl~~l~~~l 184 (465)
. ...+..++|. +++.+||+||+++ |. ..++++++++.++.
T Consensus 67 --~---------------------~~~i~~t~d~-~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~ 122 (328)
T 2hjr_A 67 --S---------------------PAKIFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC 122 (328)
T ss_dssp --C---------------------CCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC
T ss_pred --C---------------------CCEEEECCCH-HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC
Confidence 0 0257788898 7899999999998 43 23677788888776
Q ss_pred hccCCCCEEEEeecccc
Q 012349 185 KERITVPVIISLAKGVE 201 (465)
Q Consensus 185 ~~~~~~~ivIs~~kGi~ 201 (465)
+ +.+++.++|-++
T Consensus 123 p----~a~viv~tNP~~ 135 (328)
T 2hjr_A 123 P----NAFVICITNPLD 135 (328)
T ss_dssp T----TCEEEECCSSHH
T ss_pred C----CeEEEEecCchH
Confidence 3 577777777543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=4.9e-08 Score=97.83 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=72.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~--~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
|||+|||+|+||+++|..|+.+ | + +|.+|+++++.++.+.. .+... .+ ++.
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~-g-----~~~~V~l~D~~~~~~~~~~~-----~l~~~---------~~-~~~------ 53 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK-G-----FAREMVLIDVDKKRAEGDAL-----DLIHG---------TP-FTR------ 53 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-T-----CCSEEEEECSSHHHHHHHHH-----HHHHH---------GG-GSC------
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CCCeEEEEeCChHHHHHHHH-----HHHhh---------hh-hcC------
Confidence 6999999999999999999998 7 6 89999999865543111 01100 00 110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch----------------HHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~----------------l~~vl~~l~~~l~ 185 (465)
. ..+.. +|. ++++++|+||+++|... ++++++++.++.+
T Consensus 54 -~----------------------~~i~~-~d~-~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~ 108 (319)
T 1a5z_A 54 -R----------------------ANIYA-GDY-ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP 108 (319)
T ss_dssp -C----------------------CEEEE-CCG-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred -C----------------------cEEEe-CCH-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 0 12444 354 56899999999999643 5777788877753
Q ss_pred ccCCCCEEEEeeccccc
Q 012349 186 ERITVPVIISLAKGVEA 202 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~~ 202 (465)
++++|.++|++..
T Consensus 109 ----~~~ii~~tNp~~~ 121 (319)
T 1a5z_A 109 ----DSIVIVVTNPVDV 121 (319)
T ss_dssp ----TCEEEECSSSHHH
T ss_pred ----CeEEEEeCCcHHH
Confidence 5788889998765
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.8e-07 Score=102.24 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=115.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|||+|.||+.||..++.+ | ++|++++++++.+++... .+...++.... . .....
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~a-G-----~~V~l~D~~~~~l~~~~~-~i~~~l~~~~~-------~-~~~~~------ 374 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARV-G-----ISVVAVESDPKQLDAAKK-IITFTLEKEAS-------R-AHQNG------ 374 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSHHHHHHHHH-HHHHHHHHHHH-------H-HHTTT------
T ss_pred ccEEEEEcccHHHHHHHHHHHhC-C-----CchhcccchHhhhhhHHH-HHHHHHHHHHH-------h-ccccc------
Confidence 36999999999999999999998 8 899999999987765321 11111211100 0 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. +.....+..+++.++ +.+||+||.||+.. ..++++++|.+++++ ++++.|.|.++
T Consensus 375 ~------------------~~~~~~~~~~~~~~~-l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~---~aIlASNTSsl 432 (742)
T 3zwc_A 375 Q------------------ASAKPKLRFSSSTKE-LSTVDLVVEAVFEDMNLKKKVFAELSALCKP---GAFLCTNTSAL 432 (742)
T ss_dssp C------------------CCCCCCEEEESCGGG-GGSCSEEEECCCSCHHHHHHHHHHHHHHSCT---TCEEEECCSSS
T ss_pred h------------------hhhhhhhcccCcHHH-HhhCCEEEEeccccHHHHHHHHHHHhhcCCC---CceEEecCCcC
Confidence 0 001135778888754 89999999999976 688899999999988 79888888888
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCChH
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGDLV 278 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~Di~ 278 (465)
... + |.+.+..| .+++.+ .|...+-.-....++.+ .+++..+.+.++....|....+..|.-
T Consensus 433 ~i~-----------~-ia~~~~~p-~r~ig~---HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~p 496 (742)
T 3zwc_A 433 NVD-----------D-IASSTDRP-QLVIGT---HFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCY 496 (742)
T ss_dssp CHH-----------H-HHTTSSCG-GGEEEE---ECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEECCCST
T ss_pred ChH-----------H-HHhhcCCc-cccccc---cccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCcccCCCC
Confidence 764 3 55555543 343322 11111111112233332 356777888888888887777777755
Q ss_pred H
Q 012349 279 T 279 (465)
Q Consensus 279 g 279 (465)
|
T Consensus 497 G 497 (742)
T 3zwc_A 497 G 497 (742)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=94.32 Aligned_cols=107 Identities=17% Similarity=0.110 Sum_probs=71.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|+.+ +. +++|.+|+++++.++.+.. -+... .+.. ..
T Consensus 1 mkI~VIGaG~vG~~la~~la~~-~~---g~~V~l~D~~~~~~~~~~~-----~l~~~-------------~~~~----~~ 54 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEK-QL---ARELVLLDVVEGIPQGKAL-----DMYES-------------GPVG----LF 54 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TC---CSEEEEECSSSSHHHHHHH-----HHHTT-------------HHHH----TC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CC---CCEEEEEeCChhHHHHHHH-----hHHhh-------------hhcc----cC
Confidence 6999999999999999999985 31 2899999999876553110 01100 0000 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHhhhcc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKER 187 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~l~~~ 187 (465)
...+.+++|.++ +++||+||+++|.. .++++++.+.++.+
T Consensus 55 ---------------------~~~i~~t~d~~~-l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~-- 110 (310)
T 1guz_A 55 ---------------------DTKVTGSNDYAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-- 110 (310)
T ss_dssp ---------------------CCEEEEESCGGG-GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred ---------------------CcEEEECCCHHH-HCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 014667788866 89999999999753 13566666666643
Q ss_pred CCCCEEEEeeccccc
Q 012349 188 ITVPVIISLAKGVEA 202 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~ 202 (465)
+..++.++|.+..
T Consensus 111 --~~~viv~tNP~~~ 123 (310)
T 1guz_A 111 --NPIIIVVSNPLDI 123 (310)
T ss_dssp --SCEEEECCSSHHH
T ss_pred --CcEEEEEcCchHH
Confidence 5777888887654
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=91.03 Aligned_cols=130 Identities=9% Similarity=0.052 Sum_probs=87.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.+|||+|||+|.||++||..|.++ | ++|+.|++.+
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~-G-----~~V~~~~~~~--------------------------------------- 39 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSV-G-----HYVTVLHAPE--------------------------------------- 39 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHT-T-----CEEEECSSGG---------------------------------------
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEecCHH---------------------------------------
Confidence 458999999999999999999998 7 8999887631
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+ +.++| |+|||.+.+.++++++.+++++ +++|+.++-.+.
T Consensus 40 ----------------------------------~-~~~aD--ilavP~~ai~~vl~~l~~~l~~---g~ivvd~sgs~~ 79 (232)
T 3dfu_A 40 ----------------------------------D-IRDFE--LVVIDAHGVEGYVEKLSAFARR---GQMFLHTSLTHG 79 (232)
T ss_dssp ----------------------------------G-GGGCS--EEEECSSCHHHHHHHHHTTCCT---TCEEEECCSSCC
T ss_pred ----------------------------------H-hccCC--EEEEcHHHHHHHHHHHHHhcCC---CCEEEEECCcCH
Confidence 0 23578 9999999999999999988876 678887763332
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEecCCh
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s~Di 277 (465)
.+ +++....... .+ +-.-|-+ +.+ .+....+++..+.++++++..|-+++..++-
T Consensus 80 ~~------------vl~~~~~~g~-~f-vg~HPm~------g~~-~~i~a~d~~a~~~l~~L~~~lG~~vv~~~~~ 134 (232)
T 3dfu_A 80 IT------------VMDPLETSGG-IV-MSAHPIG------QDR-WVASALDELGETIVGLLVGELGGSIVEIADD 134 (232)
T ss_dssp GG------------GGHHHHHTTC-EE-EEEEEEE------TTE-EEEEESSHHHHHHHHHHHHHTTCEECCCCGG
T ss_pred HH------------HHHHHHhCCC-cE-EEeeeCC------CCc-eeeeCCCHHHHHHHHHHHHHhCCEEEEeCHH
Confidence 22 2333221111 11 1112332 222 2222345667888999999989887776553
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-07 Score=92.31 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=73.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+|||+|||+|.||+++|..|+.+ | + +|.+|+++++.++... ..++.. +...
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~-g-----~~~v~L~Di~~~~l~~~~-----~~l~~~-------------~~~~--- 55 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQK-N-----LGDVVLFDIVKNMPHGKA-----LDTSHT-------------NVMA--- 55 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHHHHH-----HHHHTH-------------HHHH---
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeCCHHHHHHHH-----HHHHhh-------------hhhc---
Confidence 357999999999999999999998 7 5 7999999987655311 011110 0000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Ccc-------------------hHHHHHHH
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST-------------------ETKEVFEE 179 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps~-------------------~l~~vl~~ 179 (465)
+. ...+..++|. +++++||+||+++ |.. .+++++++
T Consensus 56 -~~---------------------~~~i~~t~d~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~ 112 (322)
T 1t2d_A 56 -YS---------------------NCKVSGSNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGH 112 (322)
T ss_dssp -TC---------------------CCCEEEECCG-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHH
T ss_pred -CC---------------------CcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 00 0157777888 7899999999998 531 36777788
Q ss_pred HHHhhhccCCCCEEEEeecccc
Q 012349 180 ISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 180 l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+.++.+ +.+++.++|-.+
T Consensus 113 i~~~~p----~a~iiv~tNP~~ 130 (322)
T 1t2d_A 113 IKKNCP----NAFIIVVTNPVD 130 (322)
T ss_dssp HHHHCT----TSEEEECSSSHH
T ss_pred HHHHCC----CeEEEEecCChH
Confidence 877763 577777777543
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-07 Score=92.41 Aligned_cols=107 Identities=10% Similarity=0.006 Sum_probs=69.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||+++|..|+.+ |.. .+|.+|+++++.++.. .++-.+ .++ +++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~-~~~---~~v~L~D~~~~~~~g~-------~~dl~~-------~~~-~~~-------- 53 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN-LDV---DEIALVDIAEDLAVGE-------AMDLAH-------AAA-GID-------- 53 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-SCC---SEEEEECSSHHHHHHH-------HHHHHH-------HHH-TTT--------
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCC---CeEEEEECChHHHHHH-------HHHHHh-------hhh-hcC--------
Confidence 7999999999999999999998 721 2899999998765421 011111 011 111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHhhhcc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKER 187 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~l~~~ 187 (465)
.+ ..+.+++| .+++++||+||++.... .++++.+.+.++. +
T Consensus 54 --~~------------------~~i~~t~d-~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p- 110 (294)
T 1oju_A 54 --KY------------------PKIVGGAD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-P- 110 (294)
T ss_dssp --CC------------------CEEEEESC-GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-T-
T ss_pred --CC------------------CEEEEeCC-HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-C-
Confidence 00 14667778 67899999999987432 1344445555542 2
Q ss_pred CCCCEEEEeeccccc
Q 012349 188 ITVPVIISLAKGVEA 202 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~ 202 (465)
+.+++.++|-++.
T Consensus 111 --~a~iivvsNPvd~ 123 (294)
T 1oju_A 111 --ESKILVVTNPMDV 123 (294)
T ss_dssp --TCEEEECSSSHHH
T ss_pred --CeEEEEeCCcchH
Confidence 6788888876543
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-07 Score=92.97 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=68.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~--~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
|||+|||+|.||+++|..|+.+ | + +|.+|+++++.++.. ...-.+ ..+ +++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~-g-----~~~eV~L~D~~~~~~~~~-------~~~l~~-------~~~-~~~------ 53 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR-G-----SCSELVLVDRDEDRAQAE-------AEDIAH-------AAP-VSH------ 53 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECSSHHHHHHH-------HHHHTT-------SCC-TTS------
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CCCEEEEEeCCHHHHHHH-------HHhhhh-------hhh-hcC------
Confidence 6999999999999999999988 7 6 899999997644320 010000 000 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~l~ 185 (465)
. ..+.. ++. +++++||+||++++.. .++++++++.++.
T Consensus 54 -~----------------------~~i~~-~~~-~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~- 107 (304)
T 2v6b_A 54 -G----------------------TRVWH-GGH-SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA- 107 (304)
T ss_dssp -C----------------------CEEEE-ECG-GGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-
T ss_pred -C----------------------eEEEE-CCH-HHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-
Confidence 0 12333 454 5789999999999543 3477788888774
Q ss_pred ccCCCCEEEEeeccccc
Q 012349 186 ERITVPVIISLAKGVEA 202 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~~ 202 (465)
+ +++++.++|+++.
T Consensus 108 p---~~~vi~~tNP~~~ 121 (304)
T 2v6b_A 108 P---DAVLLVTSNPVDL 121 (304)
T ss_dssp S---SSEEEECSSSHHH
T ss_pred C---CeEEEEecCchHH
Confidence 4 6788888998764
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-07 Score=98.74 Aligned_cols=111 Identities=15% Similarity=0.243 Sum_probs=75.9
Q ss_pred CceEEEECccHH-HHHHHHHHHHhc-CCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAW-GSVFTAMLQDSY-GYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGam-GsalA~~La~~~-G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+|||+|||+|+| |+++|..|+.+. + +. +++|.||++++++++.++. + .. .+++..
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~-l~-~~eV~L~Di~~e~~~~~~~--~---~~-------------~~l~~~--- 84 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEE-FP-IRKLKLYDNDKERQDRIAG--A---CD-------------VFIREK--- 84 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTT-SC-EEEEEEECSCHHHHHHHHH--H---HH-------------HHHHHH---
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCC-CC-CCEEEEEeCCHHHHHHHHH--H---HH-------------HHhccC---
Confidence 469999999999 777887787651 1 10 2789999999987664211 0 00 122321
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch----------------------------
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE---------------------------- 172 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~---------------------------- 172 (465)
.++ ..+.+++|+++++++||+||+++|+..
T Consensus 85 ----~~~------------------~~I~~t~D~~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~ 142 (472)
T 1u8x_X 85 ----APD------------------IEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIA 142 (472)
T ss_dssp ----CTT------------------SEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHH
T ss_pred ----CCC------------------CEEEEECCHHHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHH
Confidence 010 257788999889999999999999843
Q ss_pred --------HHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 173 --------TKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 173 --------l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+.++++++.++.+ +++++..+|-++.
T Consensus 143 ~~~rni~i~~~i~~~i~~~~P----~A~ii~~TNPvdi 176 (472)
T 1u8x_X 143 YGMRSIGGVLEILDYMEKYSP----DAWMLNYSNPAAI 176 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT----TCEEEECCSCHHH
T ss_pred HHhhhHHHHHHHHHHHHHHCC----CeEEEEeCCcHHH
Confidence 4456666666654 6889999987753
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.6e-07 Score=95.75 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=56.8
Q ss_pred CceEEEECccH--HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGA--WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGa--mGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+|||+|||+|+ ||+++|..|+...+ + ++++|.||+++++.++.++.. .. .+++..
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~-l-~~~eV~L~Di~~e~l~~~~~~-----~~-------------~~l~~~--- 59 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPG-L-SGSTVTLMDIDEERLDAILTI-----AK-------------KYVEEV--- 59 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGG-G-TTCEEEEECSCHHHHHHHHHH-----HH-------------HHHHHT---
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCc-C-CCCEEEEEeCCHHHHHHHHHH-----HH-------------HHhccC---
Confidence 47999999999 57888888874311 0 017999999999876642211 10 122211
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps 170 (465)
..+ ..+++++|+.+++++||+||+++|+
T Consensus 60 ----~~~------------------~~I~~ttD~~eal~dAD~VIiaagv 87 (480)
T 1obb_A 60 ----GAD------------------LKFEKTMNLDDVIIDADFVINTAMV 87 (480)
T ss_dssp ----TCC------------------CEEEEESCHHHHHTTCSEEEECCCT
T ss_pred ----CCC------------------cEEEEECCHHHHhCCCCEEEECCCc
Confidence 000 2578889998889999999999986
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.7e-07 Score=91.45 Aligned_cols=94 Identities=18% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...++|+|||+|.||.++|..+... | .+|.+|+|+++..+
T Consensus 162 l~g~~vgIIG~G~iG~~vA~~l~~~-G-----~~V~~~dr~~~~~~---------------------------------- 201 (333)
T 3ba1_A 162 FSGKRVGIIGLGRIGLAVAERAEAF-D-----CPISYFSRSKKPNT---------------------------------- 201 (333)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSCCTTC----------------------------------
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCchhcc----------------------------------
Confidence 3457999999999999999999877 7 89999998763110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~k 198 (465)
......+++++++++|+|++++|.. .++.++ ++..+.+++ ++++|+++.
T Consensus 202 --------------------------g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~---gailIn~sr 252 (333)
T 3ba1_A 202 --------------------------NYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGP---KGVLINIGR 252 (333)
T ss_dssp --------------------------CSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCT---TCEEEECSC
T ss_pred --------------------------CceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCC---CCEEEECCC
Confidence 1123467888889999999999975 566666 344455666 688999998
Q ss_pred ccccc
Q 012349 199 GVEAE 203 (465)
Q Consensus 199 Gi~~~ 203 (465)
|-...
T Consensus 253 G~~vd 257 (333)
T 3ba1_A 253 GPHVD 257 (333)
T ss_dssp GGGBC
T ss_pred CchhC
Confidence 86554
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.6e-06 Score=85.69 Aligned_cols=105 Identities=13% Similarity=0.160 Sum_probs=70.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+|||+|||+|.||+++|..|+.+ | + +|.+|+++++.++.... + ++.. +. ++.
T Consensus 7 ~~kI~viGaG~vG~~~a~~l~~~-~-----~~~v~L~Di~~~~~~g~~~----d-l~~~---------~~-~~~------ 59 (324)
T 3gvi_A 7 RNKIALIGSGMIGGTLAHLAGLK-E-----LGDVVLFDIAEGTPQGKGL----D-IAES---------SP-VDG------ 59 (324)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHHHHHH----H-HHHH---------HH-HHT------
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeCCchhHHHHHH----H-Hhch---------hh-hcC------
Confidence 47999999999999999999988 7 6 89999999876542110 0 1110 00 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~l~ 185 (465)
.+ ..+.+++|. +++++||+||++.... .++++.+.+..+.
T Consensus 60 ----~~------------------~~v~~t~d~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~- 115 (324)
T 3gvi_A 60 ----FD------------------AKFTGANDY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA- 115 (324)
T ss_dssp ----CC------------------CCEEEESSG-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----CC------------------CEEEEeCCH-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-
Confidence 00 146677887 6899999999997421 2455556665554
Q ss_pred ccCCCCEEEEeecccc
Q 012349 186 ERITVPVIISLAKGVE 201 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~ 201 (465)
+ +.+++.++|-++
T Consensus 116 p---~a~iivvtNPvd 128 (324)
T 3gvi_A 116 P---EAFVICITNPLD 128 (324)
T ss_dssp T---TCEEEECCSSHH
T ss_pred C---CeEEEecCCCcH
Confidence 3 578888888654
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.2e-07 Score=92.70 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=75.5
Q ss_pred CceEEEECccH--HHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGA--WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGa--mGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.|||+|||+|+ ||++++..|+.. ..+ . .+|.||+++++.+++++. +. .++...
T Consensus 5 ~~KIaVIGaGs~g~g~~la~~l~~~-~~~-~-geV~L~Di~~e~le~~~~------~~-------------~~l~~~--- 59 (450)
T 3fef_A 5 QIKIAYIGGGSQGWARSLMSDLSID-ERM-S-GTVALYDLDFEAAQKNEV------IG-------------NHSGNG--- 59 (450)
T ss_dssp CEEEEEETTTCSSHHHHHHHHHHHC-SSC-C-EEEEEECSSHHHHHHHHH------HH-------------TTSTTS---
T ss_pred CCEEEEECCChhHhHHHHHHHHHhc-ccc-C-CeEEEEeCCHHHHHHHHH------HH-------------HHHhcc---
Confidence 47999999999 789999999874 212 1 389999999876654211 10 011110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-----------------------------
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------------------- 171 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------------------- 171 (465)
. .++++|+|+++|+++||+||++++..
T Consensus 60 ----~--------------------~~I~~TtD~~eAl~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GG 115 (450)
T 3fef_A 60 ----R--------------------WRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGG 115 (450)
T ss_dssp ----C--------------------EEEEEESSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHH
T ss_pred ----C--------------------CeEEEECCHHHHhcCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCch
Confidence 0 15788999999999999999999742
Q ss_pred ---------hHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 172 ---------ETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 172 ---------~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.+.++++++..+.+ +.++|..+|-++.
T Consensus 116 i~~alr~~~i~~~i~~~i~~~~p----~a~~i~~tNPvdi 151 (450)
T 3fef_A 116 IIRGLRAVPIFAEIARAIRDYAP----ESWVINYTNPMSV 151 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT----TSEEEECCSSHHH
T ss_pred hhcccccHHHHHHHHHHHHHHCC----CeEEEEecCchHH
Confidence 15566666666543 6889999987654
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.5e-06 Score=85.06 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=68.6
Q ss_pred hcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccc
Q 012349 36 MGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK 115 (465)
Q Consensus 36 ~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~ 115 (465)
-++....++||+|||+|.||+++|..++.+ |.+ .+|.|+|++++ ... +. .++. ...
T Consensus 7 ~~~~~~~~~kV~ViGaG~vG~~~a~~l~~~-g~~---~ev~L~Di~~~-~~g---~a-~dl~---------------~~~ 62 (303)
T 2i6t_A 7 ANHENKTVNKITVVGGGELGIACTLAISAK-GIA---DRLVLLDLSEG-TKG---AT-MDLE---------------IFN 62 (303)
T ss_dssp -------CCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECCC---------CH-HHHH---------------HHT
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEcCCcc-hHH---HH-HHHh---------------hhc
Confidence 344444568999999999999999999988 721 28999999875 221 00 0000 000
Q ss_pred hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc---------------chHHHHHHHH
Q 012349 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS---------------TETKEVFEEI 180 (465)
Q Consensus 116 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps---------------~~l~~vl~~l 180 (465)
. ..++.++|+ +++++||+||+++-. ..++++++++
T Consensus 63 -------~----------------------~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i 112 (303)
T 2i6t_A 63 -------L----------------------PNVEISKDL-SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPAL 112 (303)
T ss_dssp -------C----------------------TTEEEESCG-GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred -------C----------------------CCeEEeCCH-HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 146677888 679999999999721 1367777888
Q ss_pred HHhhhccCCCCEEEEeecccc
Q 012349 181 SRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 181 ~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.++. + +.+++.++|-++
T Consensus 113 ~~~~-p---~a~iiv~sNP~~ 129 (303)
T 2i6t_A 113 GHYS-Q---HSVLLVASQPVE 129 (303)
T ss_dssp HHHT-T---TCEEEECSSSHH
T ss_pred HHhC-C---CeEEEEcCChHH
Confidence 7776 3 578878888554
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-06 Score=85.44 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=68.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+|||+|||+|.||+.+|..|+.. | + +|.+++++++.++... .+ +... ....
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~-g-----~~~v~L~Di~~~~~~g~~----~d-l~~~-------------~~~~---- 53 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAK-E-----LGDIVLLDIVEGVPQGKA----LD-LYEA-------------SPIE---- 53 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEECSSSSHHHHHH----HH-HHTT-------------HHHH----
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CCeEEEEeCCccHHHHHH----Hh-HHHh-------------Hhhc----
Confidence 37999999999999999999988 7 4 7999999986554210 00 1110 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~l~ 185 (465)
.. ...+..++|. +++++||+||+++... .++++++.+.++.
T Consensus 54 ~~---------------------~~~i~~t~d~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~- 110 (309)
T 1ur5_A 54 GF---------------------DVRVTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS- 110 (309)
T ss_dssp TC---------------------CCCEEEESCG-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-
T ss_pred CC---------------------CeEEEECCCH-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 00 0146777888 6799999999998332 2345556666554
Q ss_pred ccCCCCEEEEeecccc
Q 012349 186 ERITVPVIISLAKGVE 201 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~ 201 (465)
+ +.+++..+|-++
T Consensus 111 p---~a~vi~~tNPv~ 123 (309)
T 1ur5_A 111 P---NAVIIMVNNPLD 123 (309)
T ss_dssp T---TCEEEECCSSHH
T ss_pred C---CeEEEEcCCchH
Confidence 3 577777787554
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=91.77 Aligned_cols=111 Identities=13% Similarity=0.154 Sum_probs=75.8
Q ss_pred CceEEEECccHH-HHHHHHHHHHh-cCCCCCCeeEEEEecCc--hhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 43 PLRIVGVGAGAW-GSVFTAMLQDS-YGYLRDKVLIRIWRRPG--RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 43 ~mkIaIIGaGam-GsalA~~La~~-~G~~~~~~~V~l~~r~~--~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
.|||+|||+|+| |.+++..|+.+ .+ +. .++|.||++++ ++++.++. + .. .+++..
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~-l~-~~ev~L~Di~~~~e~~~~~~~--~----~~------------~~~~~~- 65 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHE-LP-VGELWLVDIPEGKEKLEIVGA--L----AK------------RMVEKA- 65 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTT-CC-EEEEEEECCGGGHHHHHHHHH--H----HH------------HHHHHT-
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCC-CC-CCEEEEEEcCCChHHHHHHHH--H----HH------------HHHhhc-
Confidence 589999999999 88888888872 12 10 27899999998 76654221 0 00 122211
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch--------------------------
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-------------------------- 172 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-------------------------- 172 (465)
..+ ..+.+++|..+++++||+||+++++..
T Consensus 66 ------~~~------------------~~i~~t~D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~gg 121 (450)
T 1s6y_A 66 ------GVP------------------IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGG 121 (450)
T ss_dssp ------TCC------------------CEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHH
T ss_pred ------CCC------------------cEEEEeCCHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccch
Confidence 010 147778899889999999999999743
Q ss_pred ----------HHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 173 ----------TKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 173 ----------l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+.++++++.++.+ +++++..+|-++.
T Consensus 122 i~~~~rni~i~~~i~~~i~~~~P----~a~ii~~tNPvdi 157 (450)
T 1s6y_A 122 LFKGLRTIPVILDIIRDMEELCP----DAWLINFTNPAGM 157 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT----TCEEEECSSSHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHCC----CeEEEEeCCcHHH
Confidence 4455666666554 6889999987753
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-06 Score=74.38 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=66.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.++|+|+|+|.||..++..|.+. | ++|++++++++.++.++. ..+ ...+.+
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~-g-----~~V~vid~~~~~~~~~~~--------~~g---------~~~~~~------ 69 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSS-G-----HSVVVVDKNEYAFHRLNS--------EFS---------GFTVVG------ 69 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCGGGGGGSCT--------TCC---------SEEEES------
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHh--------cCC---------CcEEEe------
Confidence 37899999999999999999988 7 899999999875543110 000 000000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~ea-l~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+ . .. ...+.++ +.++|+||+++|+......+..+.+.+.+ ...++..+++..
T Consensus 70 d--~-------------------~~---~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~---~~~iv~~~~~~~ 122 (155)
T 2g1u_A 70 D--A-------------------AE---FETLKECGMEKADMVFAFTNDDSTNFFISMNARYMFN---VENVIARVYDPE 122 (155)
T ss_dssp C--T-------------------TS---HHHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHHTSC---CSEEEEECSSGG
T ss_pred c--C-------------------CC---HHHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHHHCC---CCeEEEEECCHH
Confidence 0 0 00 0112222 56899999999998776666665554333 456777777765
Q ss_pred c
Q 012349 202 A 202 (465)
Q Consensus 202 ~ 202 (465)
.
T Consensus 123 ~ 123 (155)
T 2g1u_A 123 K 123 (155)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-06 Score=84.32 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=69.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
..+++||+|||+|.+|+++|..++.+ |.. .+|.++|++++.++.. . .++... . .++.
T Consensus 3 ~~~~~kI~IIGaG~vG~sla~~l~~~-~~~---~ev~l~Di~~~~~~~~-~---~dl~~~----------~-~~~~---- 59 (316)
T 1ldn_A 3 NNGGARVVVIGAGFVGASYVFALMNQ-GIA---DEIVLIDANESKAIGD-A---MDFNHG----------K-VFAP---- 59 (316)
T ss_dssp TTTSCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHHH-H---HHHHHH----------T-TSSS----
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEeCCcchHHHH-H---hhHHHH----------h-hhcC----
Confidence 34568999999999999999999887 632 4899999987633320 0 011100 0 0010
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHh
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRY 183 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~ 183 (465)
.+.+++++..+++++||+||++++.. .+.++++.+.++
T Consensus 60 --------------------------~~~~i~~~~~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~ 113 (316)
T 1ldn_A 60 --------------------------KPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS 113 (316)
T ss_dssp --------------------------SCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCeEEEcCcHHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH
Confidence 02334444456799999999997643 245566666666
Q ss_pred hhccCCCCEEEEeecccc
Q 012349 184 WKERITVPVIISLAKGVE 201 (465)
Q Consensus 184 l~~~~~~~ivIs~~kGi~ 201 (465)
.+ +.+++..+|-++
T Consensus 114 ~p----~a~~iv~tNPv~ 127 (316)
T 1ldn_A 114 GF----QGLFLVATNPVD 127 (316)
T ss_dssp TC----CSEEEECSSSHH
T ss_pred CC----CCEEEEeCCchH
Confidence 43 567777787654
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=8.3e-07 Score=89.56 Aligned_cols=97 Identities=20% Similarity=0.289 Sum_probs=72.0
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...|+|+|||+|.||.++|..++.. | ++|.+|+|+++. +. ... .
T Consensus 148 l~g~~vgIIG~G~iG~~iA~~l~~~-G-----~~V~~~d~~~~~-~~---------~~~--------------~------ 191 (334)
T 2dbq_A 148 VYGKTIGIIGLGRIGQAIAKRAKGF-N-----MRILYYSRTRKE-EV---------ERE--------------L------ 191 (334)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCH-HH---------HHH--------------H------
T ss_pred CCCCEEEEEccCHHHHHHHHHHHhC-C-----CEEEEECCCcch-hh---------Hhh--------------c------
Confidence 3458999999999999999999987 7 899999998753 21 000 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-HHHHH-HHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-l~~vl-~~l~~~l~~~~~~~ivIs~~k 198 (465)
++.. .++++++.++|+|++++|... ++.++ +++.+.+++ ++++|++++
T Consensus 192 --------------------------g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~---~ailIn~sr 241 (334)
T 2dbq_A 192 --------------------------NAEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKK---TAILINIAR 241 (334)
T ss_dssp --------------------------CCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TCEEEECSC
T ss_pred --------------------------Cccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCC---CcEEEECCC
Confidence 1223 467788899999999999875 55555 355566776 688999998
Q ss_pred ccccc
Q 012349 199 GVEAE 203 (465)
Q Consensus 199 Gi~~~ 203 (465)
|-...
T Consensus 242 g~~v~ 246 (334)
T 2dbq_A 242 GKVVD 246 (334)
T ss_dssp GGGBC
T ss_pred CcccC
Confidence 85543
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-06 Score=86.70 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=63.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..++|+|||.|.||.++|..+... | .+|..|+|++... .
T Consensus 170 ~gktiGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~----------------------------~------- 208 (340)
T 4dgs_A 170 KGKRIGVLGLGQIGRALASRAEAF-G-----MSVRYWNRSTLSG----------------------------V------- 208 (340)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCTT----------------------------S-------
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCcccc----------------------------c-------
Confidence 348999999999999999999876 7 8999999876310 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
......+++++++.||+|++++| ...++.++ ++..+.+++ ++++|.++.|
T Consensus 209 -------------------------~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~---gailIN~aRG 260 (340)
T 4dgs_A 209 -------------------------DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGP---EGIVVNVARG 260 (340)
T ss_dssp -------------------------CCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTT---TCEEEECSCC
T ss_pred -------------------------CceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCC---CCEEEECCCC
Confidence 12234678888999999999999 45666666 455566676 6899999888
Q ss_pred c
Q 012349 200 V 200 (465)
Q Consensus 200 i 200 (465)
=
T Consensus 261 ~ 261 (340)
T 4dgs_A 261 N 261 (340)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=4.4e-06 Score=83.70 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=65.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++|||+|||+|++|++++..|+.. |.+ .+|.++|.++++++.. ..-+... ..++
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~-~~~---~ev~L~Di~~~~~~g~-----~~dl~~~----------~~~~------- 59 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALR-QTA---NELVLIDVFKEKAIGE-----AMDINHG----------LPFM------- 59 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHT-TCS---SEEEEECCC---CCHH-----HHHHTTS----------CCCT-------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChHHHHHH-----HHHHHHh----------HHhc-------
Confidence 458999999999999999999988 621 2899999997654420 0001100 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch----------------HHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~----------------l~~vl~~l~~~l~ 185 (465)
.+++++.+..+++++||+||++++... ++++++.+.++.
T Consensus 60 ------------------------~~~~i~~~~~~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~- 114 (318)
T 1y6j_A 60 ------------------------GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY- 114 (318)
T ss_dssp ------------------------TCEEEC--CGGGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ------------------------CCeEEEECCHHHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-
Confidence 123333233567999999999986532 567777777763
Q ss_pred ccCCCCEEEEeecccc
Q 012349 186 ERITVPVIISLAKGVE 201 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~ 201 (465)
+ +.+++..+|-++
T Consensus 115 p---~a~viv~tNPv~ 127 (318)
T 1y6j_A 115 N---HGVILVVSNPVD 127 (318)
T ss_dssp C---SCEEEECSSSHH
T ss_pred C---CcEEEEecCcHH
Confidence 3 567777777554
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.6e-07 Score=88.91 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=68.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..|+|+|||+|.||.++|..++.. | ++|.+|+|+.+..+. ... .
T Consensus 154 ~g~~vgIIG~G~iG~~iA~~l~~~-G-----~~V~~~d~~~~~~~~---------~~~--------------~------- 197 (330)
T 2gcg_A 154 TQSTVGIIGLGRIGQAIARRLKPF-G-----VQRFLYTGRQPRPEE---------AAE--------------F------- 197 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHHGGG-T-----CCEEEEESSSCCHHH---------HHT--------------T-------
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcchhH---------HHh--------------c-------
Confidence 357999999999999999999877 7 899999998653321 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+..+ ++++++.++|+|++++|.. .++.++ +++.+.+++ ++++|+++.|
T Consensus 198 -------------------------g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~---gailIn~srg 248 (330)
T 2gcg_A 198 -------------------------QAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKE---TAVFINISRG 248 (330)
T ss_dssp -------------------------TCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCT---TCEEEECSCG
T ss_pred -------------------------CceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCC---CcEEEECCCC
Confidence 12333 7778889999999999975 445555 345556665 6888888887
Q ss_pred c
Q 012349 200 V 200 (465)
Q Consensus 200 i 200 (465)
-
T Consensus 249 ~ 249 (330)
T 2gcg_A 249 D 249 (330)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.7e-06 Score=72.97 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=33.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.|+|+|+|+|.+|..++..|.+. | ++|++++++++.++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~-g-----~~v~~~d~~~~~~~ 41 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEK-G-----HDIVLIDIDKDICK 41 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHH
Confidence 37999999999999999999988 7 89999999876544
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.9e-06 Score=85.46 Aligned_cols=92 Identities=12% Similarity=0.162 Sum_probs=69.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.||..+|..+... | .+|..|+|+++..+
T Consensus 121 ~g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~----------------------------------- 159 (290)
T 3gvx_A 121 YGKALGILGYGGIGRRVAHLAKAF-G-----MRVIAYTRSSVDQN----------------------------------- 159 (290)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSCCCTT-----------------------------------
T ss_pred ecchheeeccCchhHHHHHHHHhh-C-----cEEEEEeccccccc-----------------------------------
Confidence 347999999999999999999987 7 89999998763211
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.....++++++++.+|+|++++|. ..++.++ ++..+.+++ ++++|.++.|
T Consensus 160 -------------------------~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~aRG 211 (290)
T 3gvx_A 160 -------------------------VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARK---NLTIVNVARA 211 (290)
T ss_dssp -------------------------CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCT---TCEEEECSCG
T ss_pred -------------------------cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhc---CceEEEeehh
Confidence 122345788889999999999994 4555544 445555666 7899998877
Q ss_pred ccc
Q 012349 200 VEA 202 (465)
Q Consensus 200 i~~ 202 (465)
-..
T Consensus 212 ~~v 214 (290)
T 3gvx_A 212 DVV 214 (290)
T ss_dssp GGB
T ss_pred ccc
Confidence 443
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-05 Score=79.97 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=34.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+.|||+|||+|++|++++..|+.. +.+ .++.|+|+++++++
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~~~~ 44 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQ-GIA---EEFVIVDVVKDRTK 44 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHcC-CCC---CEEEEEeCCchHHH
Confidence 348999999999999999999988 632 38999999876544
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-05 Score=79.81 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=68.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+|||+|||+|.||+++|..|+.+ | . +|.+|+++++.++.. ..-++.. ..+.
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~-~-----~~~v~l~Di~~~~~~g~-----a~dL~~~-----------~~~~------ 56 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIK-Q-----LGDVVLFDIAQGMPNGK-----ALDLLQT-----------CPIE------ 56 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSSSSHHHHH-----HHHHHTT-----------HHHH------
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CceEEEEeCChHHHHHH-----HHHHHhh-----------hhhc------
Confidence 47999999999999999999988 6 4 899999998755421 0001110 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~l~ 185 (465)
+. + ..+..++|. +++++||+||++.... .++++.+.+..+.+
T Consensus 57 ~~---------------~------~~v~~t~d~-~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p 114 (321)
T 3p7m_A 57 GV---------------D------FKVRGTNDY-KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCP 114 (321)
T ss_dssp TC---------------C------CCEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CC---------------C------cEEEEcCCH-HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCC
Confidence 00 0 145666775 6799999999997321 24555566666543
Q ss_pred ccCCCCEEEEeecccc
Q 012349 186 ERITVPVIISLAKGVE 201 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~ 201 (465)
+.+++.++|-++
T Consensus 115 ----~a~vivvtNPvd 126 (321)
T 3p7m_A 115 ----NAFVICITNPLD 126 (321)
T ss_dssp ----TCEEEECCSSHH
T ss_pred ----CcEEEEecCchH
Confidence 577887887654
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=79.88 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=31.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~ 82 (465)
++||+|||+|.||+++|..++.+ | + +|.+|++++
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~-g-----~~~v~l~D~~~ 42 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQK-E-----LADVVLVDIPQ 42 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEeccc
Confidence 47999999999999999999988 7 7 999999983
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=79.82 Aligned_cols=104 Identities=21% Similarity=0.232 Sum_probs=70.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
||+|||+|.+|+++|..++.+ |. .+|.|+|++++.++.. . .+ +... ... . +.
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~-~l----~el~L~Di~~~~~~g~-~---~d-l~~~-----------~~~--~----~~- 52 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR-GY----DDLLLIARTPGKPQGE-A---LD-LAHA-----------AAE--L----GV- 52 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-TC----SCEEEECSSTTHHHHH-H---HH-HHHH-----------HHH--H----TC-
T ss_pred CEEEECcCHHHHHHHHHHHhC-CC----CEEEEEcCChhhHHHH-H---HH-HHHh-----------hhh--c----CC-
Confidence 799999999999999999988 62 2799999998655421 0 00 1100 000 0 00
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch----------------HHHHHHHHHHhhhccC
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISRYWKERI 188 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~----------------l~~vl~~l~~~l~~~~ 188 (465)
...+..++|. +++++||+||++.+... ++++++++.++.+
T Consensus 53 --------------------~~~i~~t~d~-~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p--- 108 (308)
T 2d4a_B 53 --------------------DIRISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAK--- 108 (308)
T ss_dssp --------------------CCCEEEESCG-GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCT---
T ss_pred --------------------CeEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence 0146677787 67999999999975433 7777777777753
Q ss_pred CCCEEEEeecccc
Q 012349 189 TVPVIISLAKGVE 201 (465)
Q Consensus 189 ~~~ivIs~~kGi~ 201 (465)
+.+++.++|-++
T Consensus 109 -~a~iiv~tNPv~ 120 (308)
T 2d4a_B 109 -DAIVVITTNPVD 120 (308)
T ss_dssp -TCEEEECCSSHH
T ss_pred -CeEEEEeCCchH
Confidence 567777888554
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=80.54 Aligned_cols=109 Identities=19% Similarity=0.231 Sum_probs=69.5
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
...+.|||+|||+|++|++++..|+.. +.+ .++.|+|++++.++... .+ +... .+.
T Consensus 5 ~~~~~~KI~IiGaG~vG~~la~~l~~~-~~~---~el~L~Di~~~~~~g~~----~d-l~~~-------------~~~-- 60 (326)
T 2zqz_A 5 TDKDHQKVILVGDGAVGSSYAYAMVLQ-GIA---QEIGIVDIFKDKTKGDA----ID-LSNA-------------LPF-- 60 (326)
T ss_dssp -CCCCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHHHHH----HH-HHTT-------------GGG--
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHcC-CCC---CEEEEEeCCchHhHHHH----HH-HHHH-------------HHh--
Confidence 445668999999999999999999988 632 38999999876544210 00 1100 010
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch----------------HHHHHHHHHH
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE----------------TKEVFEEISR 182 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~----------------l~~vl~~l~~ 182 (465)
..+++++.+..+++++||+||++.+... ++++.+.+.+
T Consensus 61 --------------------------~~~~~i~~~~~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~ 114 (326)
T 2zqz_A 61 --------------------------TSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD 114 (326)
T ss_dssp --------------------------SCCCEEEECCGGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------cCCeEEEECCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0133444455678999999999985432 4445555555
Q ss_pred hhhccCCCCEEEEeecccc
Q 012349 183 YWKERITVPVIISLAKGVE 201 (465)
Q Consensus 183 ~l~~~~~~~ivIs~~kGi~ 201 (465)
+. + +.+++.++|-++
T Consensus 115 ~~-p---~a~iiv~tNPv~ 129 (326)
T 2zqz_A 115 SG-F---NGIFLVAANPVD 129 (326)
T ss_dssp HT-C---CSEEEECSSSHH
T ss_pred HC-C---CeEEEEeCCcHH
Confidence 53 3 577777887664
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.4e-05 Score=80.46 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=34.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|||+|||+|.||+++|..|+.. |.+ .+|.+++++++.++
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~-~~~---~~l~l~D~~~~k~~ 44 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQ-GIT---DELVVIDVNKEKAM 44 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCC---ceEEEEecchHHHH
Confidence 458999999999999999999988 732 38999999876544
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=80.40 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=34.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++|||+|||+|++|++++..|+.+ |.+ .+|.+++++++.++
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~-~~~---~ei~L~Di~~~~~~ 45 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQ-SIV---DELVIIDLDTEKVR 45 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-CSC---SEEEEECSCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChhHhh
Confidence 458999999999999999999988 632 48999999876443
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.16 E-value=2e-06 Score=86.83 Aligned_cols=97 Identities=22% Similarity=0.324 Sum_probs=71.5
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+...++|+|||+|.||.++|..+... | ++|.+|+|+++. +. ... .
T Consensus 143 ~l~g~~vgIIG~G~iG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~---------~~~--------------~----- 187 (333)
T 2d0i_A 143 SLYGKKVGILGMGAIGKAIARRLIPF-G-----VKLYYWSRHRKV-NV---------EKE--------------L----- 187 (333)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCH-HH---------HHH--------------H-----
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcch-hh---------hhh--------------c-----
Confidence 34458999999999999999999877 7 899999998753 11 000 0
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHH-HHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~-~l~~~l~~~~~~~ivIs~~ 197 (465)
.+.. .++++++.++|+|++++|.. .++.++. ++.+.+++ + ++|.++
T Consensus 188 ---------------------------g~~~-~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~---g-ilin~s 235 (333)
T 2d0i_A 188 ---------------------------KARY-MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEG---K-YLVNIG 235 (333)
T ss_dssp ---------------------------TEEE-CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBT---C-EEEECS
T ss_pred ---------------------------Ccee-cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCC---C-EEEECC
Confidence 1223 36778889999999999987 6666664 34556676 7 888999
Q ss_pred cccccc
Q 012349 198 KGVEAE 203 (465)
Q Consensus 198 kGi~~~ 203 (465)
+|-..+
T Consensus 236 rg~~vd 241 (333)
T 2d0i_A 236 RGALVD 241 (333)
T ss_dssp CGGGBC
T ss_pred CCcccC
Confidence 886554
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3e-06 Score=82.93 Aligned_cols=120 Identities=21% Similarity=0.230 Sum_probs=76.7
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHL 93 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l 93 (465)
.+|-+..+|-...--+.-|++. +. +...++|+|||+|.||.+++..|.+. | .+|++|+|+++.++.+
T Consensus 102 ~~g~~~g~nTd~~G~~~~l~~~-~~-~~~~~~v~iiGaG~~g~aia~~L~~~-g-----~~V~v~~r~~~~~~~l----- 168 (275)
T 2hk9_A 102 ENGKAYGYNTDWIGFLKSLKSL-IP-EVKEKSILVLGAGGASRAVIYALVKE-G-----AKVFLWNRTKEKAIKL----- 168 (275)
T ss_dssp ETTEEEEECCHHHHHHHHHHHH-CT-TGGGSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSHHHHHHH-----
T ss_pred eCCEEEeecCCHHHHHHHHHHh-CC-CcCCCEEEEECchHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHHH-----
Confidence 4565566665544444444432 21 22347999999999999999999998 7 7899999987644321
Q ss_pred HHHHhchhhhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchH
Q 012349 94 FEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET 173 (465)
Q Consensus 94 ~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l 173 (465)
.+ .+ ++.+.+++.+++.++|+||.|||....
T Consensus 169 ----~~-------------~~--------------------------------g~~~~~~~~~~~~~aDiVi~atp~~~~ 199 (275)
T 2hk9_A 169 ----AQ-------------KF--------------------------------PLEVVNSPEEVIDKVQVIVNTTSVGLK 199 (275)
T ss_dssp ----TT-------------TS--------------------------------CEEECSCGGGTGGGCSEEEECSSTTSS
T ss_pred ----HH-------------Hc--------------------------------CCeeehhHHhhhcCCCEEEEeCCCCCC
Confidence 00 00 233344666778899999999998754
Q ss_pred HHHHHHH-HHhhhccCCCCEEEEeec
Q 012349 174 KEVFEEI-SRYWKERITVPVIISLAK 198 (465)
Q Consensus 174 ~~vl~~l-~~~l~~~~~~~ivIs~~k 198 (465)
.++...+ .+.+++ +++++.+.-
T Consensus 200 ~~~~~~i~~~~l~~---g~~viDv~~ 222 (275)
T 2hk9_A 200 DEDPEIFNYDLIKK---DHVVVDIIY 222 (275)
T ss_dssp TTCCCSSCGGGCCT---TSEEEESSS
T ss_pred CCCCCCCCHHHcCC---CCEEEEcCC
Confidence 3211112 234554 577777765
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-05 Score=79.18 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=33.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|||+|||+|.||+++|..|+.+ |.+ .+|.+++++++.++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~-~~~---~el~l~D~~~~k~~ 39 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ-DVA---KEVVMVDIKDGMPQ 39 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCS---SEEEEECSSTTHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCchHHHH
Confidence 7999999999999999999988 632 38999999986544
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.6e-05 Score=80.01 Aligned_cols=107 Identities=8% Similarity=-0.044 Sum_probs=71.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..+||+|||+|.||+++|..++.+ |.+ ++|.+++++++.++.... + ++.. . .+..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~-g~~---~ev~L~Di~~~~~~g~a~----D-L~~~---------~-~~~~------ 74 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMK-DLA---DEVALVDVMEDKLKGEMM----D-LEHG---------S-LFLH------ 74 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHH-CCC---SEEEEECSCHHHHHHHHH----H-HHHH---------G-GGSC------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCC---CeEEEEECCHHHHHHHHH----H-hhhh---------h-hccc------
Confidence 358999999999999999999998 732 389999998765442100 0 1100 0 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------chHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------------~~l~~vl~~l~~~l~ 185 (465)
...+..++|+++ +++||+||++... ..++++.+++.++.
T Consensus 75 -----------------------~~~i~~t~d~~~-~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~- 129 (330)
T 3ldh_A 75 -----------------------TAKIVSGKDYSV-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS- 129 (330)
T ss_dssp -----------------------CSEEEEESSSCS-CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-
T ss_pred -----------------------CCeEEEcCCHHH-hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-
Confidence 024666788865 8999999998632 13566667777763
Q ss_pred ccCCCCEEEEeecccc
Q 012349 186 ERITVPVIISLAKGVE 201 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~ 201 (465)
+ +.+++.++|-++
T Consensus 130 P---~a~ilvvtNPvd 142 (330)
T 3ldh_A 130 P---DCLKELHPELGT 142 (330)
T ss_dssp T---TCEEEECSSSHH
T ss_pred C---CceEEeCCCccH
Confidence 3 678888887654
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.10 E-value=3.8e-06 Score=85.21 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=68.5
Q ss_pred CCCceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La-~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
...++|+|||.|.||.++|..+. .. | .+|..|+|+++..+. ... +
T Consensus 161 l~g~~vgIIG~G~IG~~vA~~l~~~~-G-----~~V~~~d~~~~~~~~---------~~~--------------~----- 206 (348)
T 2w2k_A 161 PRGHVLGAVGLGAIQKEIARKAVHGL-G-----MKLVYYDVAPADAET---------EKA--------------L----- 206 (348)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTT-C-----CEEEEECSSCCCHHH---------HHH--------------H-----
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHhc-C-----CEEEEECCCCcchhh---------Hhh--------------c-----
Confidence 34579999999999999999998 66 7 899999998753321 000 0
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~ 197 (465)
++...++++++++++|+|++++|.. .++.++ +++.+.+++ ++++|.++
T Consensus 207 ---------------------------g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~---gailin~s 256 (348)
T 2w2k_A 207 ---------------------------GAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP---GSRIVNTA 256 (348)
T ss_dssp ---------------------------TCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCT---TEEEEECS
T ss_pred ---------------------------CcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCC---CCEEEECC
Confidence 1223357778889999999999975 455555 344456665 67888887
Q ss_pred cc
Q 012349 198 KG 199 (465)
Q Consensus 198 kG 199 (465)
.|
T Consensus 257 rg 258 (348)
T 2w2k_A 257 RG 258 (348)
T ss_dssp CG
T ss_pred CC
Confidence 77
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.4e-05 Score=78.71 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=35.2
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
....|||+|||+|.+|+++|..|+.. |.+ .++.+++++++.++
T Consensus 6 ~~~~~kV~ViGaG~vG~~~a~~l~~~-~~~---~el~l~D~~~~k~~ 48 (326)
T 3vku_A 6 DKDHQKVILVGDGAVGSSYAYAMVLQ-GIA---QEIGIVDIFKDKTK 48 (326)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSCHHHHH
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhC-CCC---CeEEEEeCChHHHH
Confidence 34568999999999999999999988 732 38999999876544
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-05 Score=75.79 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=67.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||.|+|+|.+|..+|..|.+. | ++|++++++++.++.+.. ..+ ..... ++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~-g-----~~v~vid~~~~~~~~l~~--------~~~---------~~~i~------gd 51 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR-K-----YGVVIINKDRELCEEFAK--------KLK---------ATIIH------GD 51 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHHHHH--------HSS---------SEEEE------SC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHHHHHH--------HcC---------CeEEE------cC
Confidence 7899999999999999999988 7 899999999876553110 000 00010 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~ea-l~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
..-...++++ +.++|+||++++.+.....+..+...+.+ ...+++.++.-..
T Consensus 52 ------------------------~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~---~~~iia~~~~~~~ 104 (218)
T 3l4b_C 52 ------------------------GSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFG---VKRVVSLVNDPGN 104 (218)
T ss_dssp ------------------------TTSHHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSC---CCEEEECCCSGGG
T ss_pred ------------------------CCCHHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcC---CCeEEEEEeCcch
Confidence 0000123333 67899999999999887777666654333 3567776665543
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.04 E-value=4.8e-06 Score=83.43 Aligned_cols=94 Identities=23% Similarity=0.373 Sum_probs=68.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++|+|||.|.||.++|..+... | .+|..|+|+++..+. ..
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------- 179 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAW-G-----FPLRCWSRSRKSWPG--------------------------VE------- 179 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTT-T-----CCEEEEESSCCCCTT--------------------------CE-------
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEEcCCchhhhh--------------------------hh-------
Confidence 47999999999999999999876 7 899999998642210 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
......+++++++.+|+|++++| ...++.++ ++....+++ ++++|.++.|=
T Consensus 180 ------------------------~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRG~ 232 (315)
T 3pp8_A 180 ------------------------SYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPD---GAYVLNLARGV 232 (315)
T ss_dssp ------------------------EEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCT---TEEEEECSCGG
T ss_pred ------------------------hhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCC---CCEEEECCCCh
Confidence 00012467788999999999999 44666665 444555666 68899888874
Q ss_pred cc
Q 012349 201 EA 202 (465)
Q Consensus 201 ~~ 202 (465)
..
T Consensus 233 ~v 234 (315)
T 3pp8_A 233 HV 234 (315)
T ss_dssp GB
T ss_pred hh
Confidence 33
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=8.3e-06 Score=81.32 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=64.0
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...++|+|||+|.||.+++..|++..| .++|.+|+|+++.++++ .+. +.
T Consensus 133 ~~~~~igiIG~G~~g~~~a~~l~~~~g----~~~V~v~dr~~~~~~~l---------~~~-------------~~----- 181 (312)
T 2i99_A 133 PSSEVLCILGAGVQAYSHYEIFTEQFS----FKEVRIWNRTKENAEKF---------ADT-------------VQ----- 181 (312)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHHCC----CSEEEEECSSHHHHHHH---------HHH-------------SS-----
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHhCC----CcEEEEEcCCHHHHHHH---------HHH-------------hh-----
Confidence 356899999999999999999987523 14899999998755431 000 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
..+...++++++++++|+||+|||+. ..++.. +++++ +++|+++.
T Consensus 182 -------------------------~~~~~~~~~~e~v~~aDiVi~atp~~--~~v~~~--~~l~~---g~~vi~~g 226 (312)
T 2i99_A 182 -------------------------GEVRVCSSVQEAVAGADVIITVTLAT--EPILFG--EWVKP---GAHINAVG 226 (312)
T ss_dssp -------------------------SCCEECSSHHHHHTTCSEEEECCCCS--SCCBCG--GGSCT---TCEEEECC
T ss_pred -------------------------CCeEEeCCHHHHHhcCCEEEEEeCCC--CcccCH--HHcCC---CcEEEeCC
Confidence 01345678888899999999999963 333322 45555 56666653
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.97 E-value=3.4e-05 Score=76.92 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=33.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|||+|||+|++|++++..|+.+ +.+ .++.|+|+++++++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~k~~ 39 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL-GVA---REVVLVDLDRKLAQ 39 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCC---CEEEEEeCChhHHH
Confidence 7999999999999999999987 532 58999999876544
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-05 Score=68.90 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=34.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+++|.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~-g-----~~V~~id~~~~~~~~ 44 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAA-G-----KKVLAVDKSKEKIEL 44 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHH
Confidence 356899999999999999999998 7 899999999876553
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.9e-05 Score=65.61 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=34.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++|+|+|+|+|.||.+++..|.+. | .++|++++|+++..+
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~-g----~~~v~~~~r~~~~~~ 43 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTS-S----NYSVTVADHDLAALA 43 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHC-S----SEEEEEEESCHHHHH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhC-C----CceEEEEeCCHHHHH
Confidence 357999999999999999999988 5 278999999886544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.96 E-value=7.2e-05 Score=65.23 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=36.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+....+|.|+|+|.||..+|..|.+. | ++|++++++++.++.
T Consensus 4 ~~~~~~viIiG~G~~G~~la~~L~~~-g-----~~v~vid~~~~~~~~ 45 (140)
T 3fwz_A 4 VDICNHALLVGYGRVGSLLGEKLLAS-D-----IPLVVIETSRTRVDE 45 (140)
T ss_dssp CCCCSCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCHHHHHH
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 34457899999999999999999988 7 899999999876654
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=97.94 E-value=1.2e-05 Score=81.81 Aligned_cols=97 Identities=25% Similarity=0.293 Sum_probs=68.8
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
..-++|+|||.|.||..+|..+... | .+|..|+|++...+. ....
T Consensus 162 l~gktvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~~~--- 206 (351)
T 3jtm_A 162 LEGKTIGTVGAGRIGKLLLQRLKPF-G-----CNLLYHDRLQMAPEL--------------------------EKET--- 206 (351)
T ss_dssp STTCEEEEECCSHHHHHHHHHHGGG-C-----CEEEEECSSCCCHHH--------------------------HHHH---
T ss_pred ccCCEEeEEEeCHHHHHHHHHHHHC-C-----CEEEEeCCCccCHHH--------------------------HHhC---
Confidence 3457999999999999999999876 7 889999987632221 0000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~k 198 (465)
++....+++++++.+|+|++++|.. .++.++ ++....+++ ++++|.++.
T Consensus 207 --------------------------g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aR 257 (351)
T 3jtm_A 207 --------------------------GAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK---GVLIVNNAR 257 (351)
T ss_dssp --------------------------CCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCT---TEEEEECSC
T ss_pred --------------------------CCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCC---CCEEEECcC
Confidence 2334467889999999999999953 444444 334445665 688988887
Q ss_pred ccc
Q 012349 199 GVE 201 (465)
Q Consensus 199 Gi~ 201 (465)
|=.
T Consensus 258 G~~ 260 (351)
T 3jtm_A 258 GAI 260 (351)
T ss_dssp GGG
T ss_pred chh
Confidence 743
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.7e-06 Score=71.68 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=32.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+||+|||+|.||.+++..|... | ++|++|+|+++..+
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~-g-----~~v~v~~r~~~~~~ 58 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYP-Q-----YKVTVAGRNIDHVR 58 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTT-T-----CEEEEEESCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEcCCHHHHH
Confidence 46999999999999999999877 6 67999999986544
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.1e-05 Score=86.35 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=71.9
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...++|+|||.|.||.++|..|... | .+|..|+++... +. ... +
T Consensus 140 l~g~~vgIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~---------a~~--------------~------ 183 (529)
T 1ygy_A 140 IFGKTVGVVGLGRIGQLVAQRIAAF-G-----AYVVAYDPYVSP-AR---------AAQ--------------L------ 183 (529)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCH-HH---------HHH--------------H------
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEECCCCCh-hH---------HHh--------------c------
Confidence 3458999999999999999999877 7 899999987631 11 000 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHH-HHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE-ISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~-l~~~l~~~~~~~ivIs~~k 198 (465)
.+... +++++++.||+|++++|.. .++.++.+ +.+.+++ +++++.+++
T Consensus 184 --------------------------g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~---g~ilin~ar 233 (529)
T 1ygy_A 184 --------------------------GIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKP---GVIIVNAAR 233 (529)
T ss_dssp --------------------------TCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSC
T ss_pred --------------------------CcEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCC---CCEEEECCC
Confidence 12222 6778889999999999987 77777755 6566776 688999998
Q ss_pred ccccc
Q 012349 199 GVEAE 203 (465)
Q Consensus 199 Gi~~~ 203 (465)
|-...
T Consensus 234 g~iv~ 238 (529)
T 1ygy_A 234 GGLVD 238 (529)
T ss_dssp TTSBC
T ss_pred Cchhh
Confidence 85443
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.88 E-value=5.6e-05 Score=76.18 Aligned_cols=108 Identities=10% Similarity=0.080 Sum_probs=70.2
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...+||+|||+|.||+++|..|+.+ |.. .+|.|++++++.++.... | ++.. . .+ +
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~-~~~---~el~L~Di~~~~~~g~a~----D-L~~~---------~-~~-~----- 71 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMK-DLA---DELALVDVIEDKLKGEMM----D-LQHG---------S-LF-L----- 71 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSCHHHHHHHHH----H-HHHT---------G-GG-C-----
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-CCC---ceEEEEeCChHHHHHHHH----h-hhhh---------h-hc-c-----
Confidence 4568999999999999999999988 621 389999998765442100 0 1100 0 00 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--c--------------chHHHHHHHHHHhh
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISRYW 184 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp--s--------------~~l~~vl~~l~~~l 184 (465)
. ...+..++|.+ ++++||+||++.- . ..++++.+.+.++.
T Consensus 72 --~---------------------~~~i~~~~d~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~ 127 (331)
T 4aj2_A 72 --K---------------------TPKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYS 127 (331)
T ss_dssp --S---------------------CCEEEECSSGG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC
T ss_pred --C---------------------CCeEEEcCCHH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHC
Confidence 0 01345567776 5899999999862 2 13556666666663
Q ss_pred hccCCCCEEEEeecccc
Q 012349 185 KERITVPVIISLAKGVE 201 (465)
Q Consensus 185 ~~~~~~~ivIs~~kGi~ 201 (465)
+ +.+++.++|-++
T Consensus 128 p----~a~vlvvtNPvd 140 (331)
T 4aj2_A 128 P----QCKLLIVSNPVD 140 (331)
T ss_dssp T----TCEEEECSSSHH
T ss_pred C----CeEEEEecChHH
Confidence 3 578888888654
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.3e-05 Score=79.57 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=33.1
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
-+++.|||+|+|||.+|..++..|++. ++|++++++.+.+++
T Consensus 12 ~~g~~mkilvlGaG~vG~~~~~~L~~~-------~~v~~~~~~~~~~~~ 53 (365)
T 3abi_A 12 IEGRHMKVLILGAGNIGRAIAWDLKDE-------FDVYIGDVNNENLEK 53 (365)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESCHHHHHH
T ss_pred ccCCccEEEEECCCHHHHHHHHHHhcC-------CCeEEEEcCHHHHHH
Confidence 456679999999999999999999765 789999998765543
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00011 Score=72.74 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=68.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.+|+++|..|+.+ +.. .++.|+|.+++.++- +.+ | ++.. ..+++ .
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~-~~~---~el~L~Di~~~~~~G---~a~-D-L~h~----------~~~~~-------~ 54 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN-LDV---DEIALVDIAEDLAVG---EAM-D-LAHA----------AAGID-------K 54 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-SCC---SEEEEECSSHHHHHH---HHH-H-HHHH----------HGGGT-------C
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEeCCCCcchh---hhh-h-hhcc----------cccCC-------C
Confidence 8999999999999999999988 643 479999998754331 110 0 1100 00111 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Ccc--------------hHHHHHHHHHHhhhcc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYWKER 187 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps~--------------~l~~vl~~l~~~l~~~ 187 (465)
+ ..+..++|.+ ++++||+||++- |.. -++++.+++.++.+
T Consensus 55 ---------------~------~~i~~~~d~~-~~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p-- 110 (294)
T 2x0j_A 55 ---------------Y------PKIVGGADYS-LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-- 110 (294)
T ss_dssp ---------------C------CEEEEESCGG-GGTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTST--
T ss_pred ---------------C------CeEecCCCHH-HhCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 0 1345566774 589999999976 221 24555556655543
Q ss_pred CCCCEEEEeeccccc
Q 012349 188 ITVPVIISLAKGVEA 202 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~ 202 (465)
+.+++.++|-++.
T Consensus 111 --~aivlvvsNPvd~ 123 (294)
T 2x0j_A 111 --ESKILVVTNPMDV 123 (294)
T ss_dssp --TCEEEECSSSHHH
T ss_pred --ceEEEEecCcchh
Confidence 5788889987754
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.6e-05 Score=79.85 Aligned_cols=94 Identities=21% Similarity=0.357 Sum_probs=67.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.||..+|..+... | .+|..|+|+++..+. +.
T Consensus 136 ~gktvGIiGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------ 177 (324)
T 3evt_A 136 TGQQLLIYGTGQIGQSLAAKASAL-G-----MHVIGVNTTGHPADH--------------------------FH------ 177 (324)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSCCCCTT--------------------------CS------
T ss_pred cCCeEEEECcCHHHHHHHHHHHhC-C-----CEEEEECCCcchhHh--------------------------Hh------
Confidence 347999999999999999999877 7 899999998642210 10
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
......+++++++.||+|++++|. ..++.++ ++....+++ ++++|.++.|
T Consensus 178 -------------------------~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~---gailIN~aRG 229 (324)
T 3evt_A 178 -------------------------ETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQ---QPMLINIGRG 229 (324)
T ss_dssp -------------------------EEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCS---CCEEEECSCG
T ss_pred -------------------------hccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCC---CCEEEEcCCC
Confidence 011234667888999999999994 4555544 334445665 6889988877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 230 ~~ 231 (324)
T 3evt_A 230 PA 231 (324)
T ss_dssp GG
T ss_pred hh
Confidence 43
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=7.1e-05 Score=75.32 Aligned_cols=83 Identities=22% Similarity=0.165 Sum_probs=59.7
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHh-cCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDS-YGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~-~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
..+++||+|||+|.||..++..+.+. .+ .++ .+++++++.+++. .+. +
T Consensus 10 ~~~~~rvgiiG~G~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~---------~~~-------------~--- 59 (354)
T 3q2i_A 10 TDRKIRFALVGCGRIANNHFGALEKHADR-----AELIDVCDIDPAALKAA---------VER-------------T--- 59 (354)
T ss_dssp CSSCEEEEEECCSTTHHHHHHHHHHTTTT-----EEEEEEECSSHHHHHHH---------HHH-------------H---
T ss_pred CCCcceEEEEcCcHHHHHHHHHHHhCCCC-----eEEEEEEcCCHHHHHHH---------HHH-------------c---
Confidence 34568999999999999999988865 23 564 4888887654321 000 0
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHH
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~ 181 (465)
++.+.+|+++.+. +.|+|++|+|+....+++....
T Consensus 60 -----------------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al 96 (354)
T 3q2i_A 60 -----------------------------GARGHASLTDMLAQTDADIVILTTPSGLHPTQSIECS 96 (354)
T ss_dssp -----------------------------CCEEESCHHHHHHHCCCSEEEECSCGGGHHHHHHHHH
T ss_pred -----------------------------CCceeCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHH
Confidence 2356688888776 7899999999998777766544
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.1e-05 Score=79.74 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=68.3
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+...++|+|||.|.||.++|..+... | .+|..|+++.+... .. ..
T Consensus 165 ~l~g~tvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~-----------~~-------------~~----- 209 (347)
T 1mx3_A 165 RIRGETLGIIGLGRVGQAVALRAKAF-G-----FNVLFYDPYLSDGV-----------ER-------------AL----- 209 (347)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCTTH-----------HH-------------HH-----
T ss_pred CCCCCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCCcchhh-----------Hh-------------hc-----
Confidence 44558999999999999999999876 7 89999998753210 00 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~ 197 (465)
++....+++++++.+|+|++++|.. .++.++ ++..+.+++ ++++|.++
T Consensus 210 ---------------------------g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~a 259 (347)
T 1mx3_A 210 ---------------------------GLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQ---GAFLVNTA 259 (347)
T ss_dssp ---------------------------TCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCT---TEEEEECS
T ss_pred ---------------------------CCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCC---CCEEEECC
Confidence 1223346788889999999999964 555555 344445665 67888888
Q ss_pred ccc
Q 012349 198 KGV 200 (465)
Q Consensus 198 kGi 200 (465)
.|=
T Consensus 260 rg~ 262 (347)
T 1mx3_A 260 RGG 262 (347)
T ss_dssp CTT
T ss_pred CCh
Confidence 773
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=2e-05 Score=78.93 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=67.4
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec-CchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR-PGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r-~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
...++|+|||.|.||.++|..+... | .+|..|+| +++.... ...
T Consensus 144 l~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~~~---------------------------~~~-- 188 (320)
T 1gdh_A 144 LDNKTLGIYGFGSIGQALAKRAQGF-D-----MDIDYFDTHRASSSDE---------------------------ASY-- 188 (320)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHHHH---------------------------HHH--
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCCcChhhh---------------------------hhc--
Confidence 3447999999999999999999876 7 89999999 7642100 000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~ 197 (465)
++...+++++++..+|+|++++|.. .++.++ +...+.+++ ++++|.++
T Consensus 189 ---------------------------g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~---gailIn~a 238 (320)
T 1gdh_A 189 ---------------------------QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQ---GAIVVNTA 238 (320)
T ss_dssp ---------------------------TCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCT---TEEEEECS
T ss_pred ---------------------------CcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCC---CcEEEECC
Confidence 1223346788889999999999964 455555 334455665 67888888
Q ss_pred cc
Q 012349 198 KG 199 (465)
Q Consensus 198 kG 199 (465)
.|
T Consensus 239 rg 240 (320)
T 1gdh_A 239 RG 240 (320)
T ss_dssp CG
T ss_pred CC
Confidence 77
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.3e-05 Score=78.30 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=65.8
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...++|+|||.|.||..+|..+... | .+|..|+|+++.... .. .
T Consensus 140 l~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~~----------~~--------------~------ 183 (313)
T 2ekl_A 140 LAGKTIGIVGFGRIGTKVGIIANAM-G-----MKVLAYDILDIREKA----------EK--------------I------ 183 (313)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHHH----------HH--------------T------
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCCcchhHH----------Hh--------------c------
Confidence 3458999999999999999999877 7 899999998752110 00 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-HHHHH-HHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-l~~vl-~~l~~~l~~~~~~~ivIs~~k 198 (465)
++.. .+++++++.+|+|++++|... ++.++ +...+.+++ ++++|.++-
T Consensus 184 --------------------------g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~---ga~lIn~ar 233 (313)
T 2ekl_A 184 --------------------------NAKA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKD---NVIIVNTSR 233 (313)
T ss_dssp --------------------------TCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCT---TEEEEESSC
T ss_pred --------------------------Ccee-cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCC---CCEEEECCC
Confidence 1222 367788899999999999643 44444 334445565 678888877
Q ss_pred c
Q 012349 199 G 199 (465)
Q Consensus 199 G 199 (465)
|
T Consensus 234 g 234 (313)
T 2ekl_A 234 A 234 (313)
T ss_dssp G
T ss_pred C
Confidence 6
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00011 Score=74.29 Aligned_cols=105 Identities=17% Similarity=0.249 Sum_probs=68.4
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+|||+|||+ |.+|+++|..++.. |.. ++|.++|+++++++.... | ++. ..+ +
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~-g~~---~evvLiDi~~~k~~g~a~----D-L~~-----------~~~-~------ 60 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMM-RLT---PNLCLYDPFAVGLEGVAE----E-IRH-----------CGF-E------ 60 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHT-TCC---SCEEEECSCHHHHHHHHH----H-HHH-----------HCC-T------
T ss_pred CCEEEEECCCChHHHHHHHHHHhc-CCC---CEEEEEeCCchhHHHHHH----h-hhh-----------CcC-C------
Confidence 579999998 99999999999887 631 489999998764432100 0 100 001 1
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc--------------chHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS--------------TETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps--------------~~l~~vl~~l~~~l~ 185 (465)
..++.+++|..+++++||+||++. |. ..++++.+.+.++.+
T Consensus 61 -----------------------~~~i~~t~d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p 117 (343)
T 3fi9_A 61 -----------------------GLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCP 117 (343)
T ss_dssp -----------------------TCCCEEESCHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred -----------------------CCceEEcCCHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 014677889988899999999986 22 124455555555543
Q ss_pred ccCCCCE-EEEeecccc
Q 012349 186 ERITVPV-IISLAKGVE 201 (465)
Q Consensus 186 ~~~~~~i-vIs~~kGi~ 201 (465)
+.+ ++.++|-++
T Consensus 118 ----~a~~vlvvsNPvd 130 (343)
T 3fi9_A 118 ----DCKHVIIIFNPAD 130 (343)
T ss_dssp ----TCCEEEECSSSHH
T ss_pred ----CcEEEEEecCchH
Confidence 464 777887654
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.3e-05 Score=66.33 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=33.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+++|.|+|+|.+|..++..|.+. | ++|++++++++.++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~-g-----~~v~~~d~~~~~~~ 43 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRM-G-----HEVLAVDINEEKVN 43 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESCHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 45799999999999999999988 7 88999999876543
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=97.81 E-value=2.5e-05 Score=80.45 Aligned_cols=97 Identities=20% Similarity=0.186 Sum_probs=68.7
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+...++|+|||.|.||.++|..+... | .+|..|+|+....+. ....
T Consensus 188 ~l~gktvGIIGlG~IG~~vA~~l~a~-G-----~~V~~~d~~~~~~~~--------------------------~~~~-- 233 (393)
T 2nac_A 188 DLEAMHVGTVAAGRIGLAVLRRLAPF-D-----VHLHYTDRHRLPESV--------------------------EKEL-- 233 (393)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCCHHH--------------------------HHHH--
T ss_pred cCCCCEEEEEeECHHHHHHHHHHHhC-C-----CEEEEEcCCccchhh--------------------------Hhhc--
Confidence 34457999999999999999999876 7 899999987632211 0000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~ 197 (465)
++....++++.++.+|+|++++|.. .++.++ ++....+++ ++++|.++
T Consensus 234 ---------------------------G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~a 283 (393)
T 2nac_A 234 ---------------------------NLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR---GAYIVNTA 283 (393)
T ss_dssp ---------------------------TCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCT---TEEEEECS
T ss_pred ---------------------------CceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCC---CCEEEECC
Confidence 1233356788899999999999953 555555 344455665 68888888
Q ss_pred ccc
Q 012349 198 KGV 200 (465)
Q Consensus 198 kGi 200 (465)
.|=
T Consensus 284 RG~ 286 (393)
T 2nac_A 284 RGK 286 (393)
T ss_dssp CGG
T ss_pred Cch
Confidence 773
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=5.4e-05 Score=66.62 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=54.2
Q ss_pred CCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 42 ~~mkIaIIGa----GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
.+.+|+|||+ |.||..++..|.+. | ++|+-++++.+. +.
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~-G-----~~V~~vnp~~~~-----------------------------i~-- 55 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSK-G-----FEVLPVNPNYDE-----------------------------IE-- 55 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CEEEEECTTCSE-----------------------------ET--
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHC-C-----CEEEEeCCCCCe-----------------------------EC--
Confidence 4579999999 99999999999888 7 664444433210 11
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHH
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~ 182 (465)
++.+..+++++.+.+|+++++||+....++++++..
T Consensus 56 -----------------------------G~~~~~s~~el~~~vDlvii~vp~~~v~~v~~~~~~ 91 (138)
T 1y81_A 56 -----------------------------GLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVE 91 (138)
T ss_dssp -----------------------------TEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred -----------------------------CeeecCCHHHhCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence 123334555655678999999999999999988765
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.8e-05 Score=74.11 Aligned_cols=126 Identities=13% Similarity=0.167 Sum_probs=77.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
||||+|+|+|.||..++..+.+. + +++. +++++.+. ..
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~-~-----~eLva~~d~~~~~----------------------------~~------- 41 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK-G-----HEIVGVIENTPKA----------------------------TT------- 41 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEECSSCC------------------------------C-------
T ss_pred ceEEEEECcCHHHHHHHHHHHhC-C-----CEEEEEEecCccc----------------------------cC-------
Confidence 58999999999999999999887 5 4433 35554320 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
++.+++|+++.+ ++|+||-++.+..+.+.++ +.. +..+|+.+.|+.
T Consensus 42 -------------------------gv~v~~dl~~l~-~~DVvIDft~p~a~~~~~~-----l~~---g~~vVigTTG~s 87 (243)
T 3qy9_A 42 -------------------------PYQQYQHIADVK-GADVAIDFSNPNLLFPLLD-----EDF---HLPLVVATTGEK 87 (243)
T ss_dssp -------------------------CSCBCSCTTTCT-TCSEEEECSCHHHHHHHHT-----SCC---CCCEEECCCSSH
T ss_pred -------------------------CCceeCCHHHHh-CCCEEEEeCChHHHHHHHH-----Hhc---CCceEeCCCCCC
Confidence 123456676666 8999996666655555544 333 455677788986
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcC
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRR 266 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~ 266 (465)
.+. .+.+.+... .+.++..|||..-+.-= .+.++.+++.|..
T Consensus 88 ~e~---------~~~l~~aa~----~~~v~~a~N~S~Gv~l~----------~~~~~~aa~~l~~ 129 (243)
T 3qy9_A 88 EKL---------LNKLDELSQ----NMPVFFSANMSYGVHAL----------TKILAAAVPLLDD 129 (243)
T ss_dssp HHH---------HHHHHHHTT----TSEEEECSSCCHHHHHH----------HHHHHHHHHHTTT
T ss_pred HHH---------HHHHHHHHh----cCCEEEECCccHHHHHH----------HHHHHHHHHhcCC
Confidence 541 133444332 24568899997632210 1345666677754
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=97.80 E-value=2.5e-05 Score=79.71 Aligned_cols=96 Identities=23% Similarity=0.242 Sum_probs=68.1
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
+...++|+|||.|.||.++|..+... | .+ |..|+|+....+. ...
T Consensus 161 ~l~g~tvgIIG~G~IG~~vA~~l~~~-G-----~~~V~~~d~~~~~~~~--------------------------~~~-- 206 (364)
T 2j6i_A 161 DIEGKTIATIGAGRIGYRVLERLVPF-N-----PKELLYYDYQALPKDA--------------------------EEK-- 206 (364)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHGGG-C-----CSEEEEECSSCCCHHH--------------------------HHH--
T ss_pred cCCCCEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECCCccchhH--------------------------HHh--
Confidence 34457999999999999999999876 7 76 9999987643221 000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEe
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISL 196 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~ 196 (465)
.++....++++++..+|+|++++|.. .++.++ +...+.+++ ++++|.+
T Consensus 207 ---------------------------~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---ga~lIn~ 256 (364)
T 2j6i_A 207 ---------------------------VGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK---GAWLVNT 256 (364)
T ss_dssp ---------------------------TTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEEC
T ss_pred ---------------------------cCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCC---CCEEEEC
Confidence 02233457888889999999999975 455544 334455665 6788888
Q ss_pred ecc
Q 012349 197 AKG 199 (465)
Q Consensus 197 ~kG 199 (465)
+.|
T Consensus 257 arG 259 (364)
T 2j6i_A 257 ARG 259 (364)
T ss_dssp SCG
T ss_pred CCC
Confidence 877
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.79 E-value=3.7e-05 Score=77.88 Aligned_cols=93 Identities=19% Similarity=0.182 Sum_probs=66.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++|+|||.|.||..+|..+... | .+|..|+|+....+. ..
T Consensus 173 gktvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------- 213 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRARGF-G-----LAIHYHNRTRLSHAL--------------------------EE------- 213 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHHH--------------------------HT-------
T ss_pred CCEEEEEEeChhHHHHHHHHHHC-C-----CEEEEECCCCcchhh--------------------------hc-------
Confidence 47999999999999999999866 6 899999997632110 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
......+++++++.||+|++++|. ..++.++ ++....+++ ++++|.++.|=
T Consensus 214 ------------------------g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~---gailIN~aRG~ 266 (345)
T 4g2n_A 214 ------------------------GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPE---GAVVINISRGD 266 (345)
T ss_dssp ------------------------TCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCT---TEEEEECSCGG
T ss_pred ------------------------CCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCC---CcEEEECCCCc
Confidence 122345788889999999999994 4444444 334445565 68898888774
Q ss_pred c
Q 012349 201 E 201 (465)
Q Consensus 201 ~ 201 (465)
.
T Consensus 267 ~ 267 (345)
T 4g2n_A 267 L 267 (345)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=1.9e-05 Score=78.67 Aligned_cols=89 Identities=18% Similarity=0.298 Sum_probs=66.0
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...++|+|||.|.||..+|..+... | ++|..|+|+.+ +. +.
T Consensus 122 l~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~dr~~~--~~----------------------------~~--- 162 (303)
T 1qp8_A 122 IQGEKVAVLGLGEIGTRVGKILAAL-G-----AQVRGFSRTPK--EG----------------------------PW--- 162 (303)
T ss_dssp CTTCEEEEESCSTHHHHHHHHHHHT-T-----CEEEEECSSCC--CS----------------------------SS---
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcc--cc----------------------------Cc---
Confidence 3458999999999999999999877 7 89999998763 10 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHH-HHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~-~l~~~l~~~~~~~ivIs~~k 198 (465)
....+++++++.+|+|++++|.. .++.++. +..+.+++ ++++|.++.
T Consensus 163 ----------------------------~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~---gailin~sr 211 (303)
T 1qp8_A 163 ----------------------------RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAE---DAVFVNVGR 211 (303)
T ss_dssp ----------------------------CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSC
T ss_pred ----------------------------ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCC---CCEEEECCC
Confidence 01235667889999999999976 4666653 45556666 688888887
Q ss_pred c
Q 012349 199 G 199 (465)
Q Consensus 199 G 199 (465)
|
T Consensus 212 g 212 (303)
T 1qp8_A 212 A 212 (303)
T ss_dssp G
T ss_pred C
Confidence 6
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.4e-05 Score=69.42 Aligned_cols=83 Identities=17% Similarity=0.026 Sum_probs=56.8
Q ss_pred HHhhhhcCCCCCCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh-hhhhhhhhHHHHhchhhhHH
Q 012349 31 ELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV-DRATAEHLFEVINSREDVLR 105 (465)
Q Consensus 31 ~~~~~~~~~~~~~mkIaIIGa----GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~-~~i~~~~l~~~i~~~~~~~~ 105 (465)
+++.++.. +.+|+|||+ |.||..++..|.+. | ++|+.++++. . ++
T Consensus 5 ~l~~ll~~----p~~IavIGas~~~g~~G~~~~~~L~~~-G-----~~v~~vnp~~--~g~~------------------ 54 (145)
T 2duw_A 5 DIAGILTS----TRTIALVGASDKPDRPSYRVMKYLLDQ-G-----YHVIPVSPKV--AGKT------------------ 54 (145)
T ss_dssp SHHHHHHH----CCCEEEESCCSCTTSHHHHHHHHHHHH-T-----CCEEEECSSS--TTSE------------------
T ss_pred HHHHHHhC----CCEEEEECcCCCCCChHHHHHHHHHHC-C-----CEEEEeCCcc--cccc------------------
Confidence 35555621 468999999 89999999999988 7 6654444432 1 10
Q ss_pred hhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHH
Q 012349 106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 106 ~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~ 182 (465)
+. ++.+..++++....+|+++++||+....++++++..
T Consensus 55 --------i~-------------------------------G~~~~~sl~el~~~~Dlvii~vp~~~v~~v~~~~~~ 92 (145)
T 2duw_A 55 --------LL-------------------------------GQQGYATLADVPEKVDMVDVFRNSEAAWGVAQEAIA 92 (145)
T ss_dssp --------ET-------------------------------TEECCSSTTTCSSCCSEEECCSCSTHHHHHHHHHHH
T ss_pred --------cC-------------------------------CeeccCCHHHcCCCCCEEEEEeCHHHHHHHHHHHHH
Confidence 11 122333444545578999999999999999988766
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=6.3e-05 Score=71.30 Aligned_cols=96 Identities=14% Similarity=0.296 Sum_probs=62.6
Q ss_pred hHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHH--HHHhcCCCCCCe-eEEEEecCchhhhhhhhhhhHHHHhchh
Q 012349 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAM--LQDSYGYLRDKV-LIRIWRRPGRSVDRATAEHLFEVINSRE 101 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~--La~~~G~~~~~~-~V~l~~r~~~~~~~i~~~~l~~~i~~~~ 101 (465)
.++-++++++.++.. ..++|+|||+|++|.+++.. +... | . -|-++|.+++.+.+
T Consensus 69 v~~L~~~~~~~lg~~--~~~rV~IIGAG~~G~~La~~~~~~~~-g-----~~iVg~~D~dp~k~g~-------------- 126 (215)
T 2vt3_A 69 VDYLLSFFRKTLDQD--EMTDVILIGVGNLGTAFLHYNFTKNN-N-----TKISMAFDINESKIGT-------------- 126 (215)
T ss_dssp HHHHHHHHHHHHHHC-----CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTTC--------------
T ss_pred hHHHHHHHHHHhCcC--CCCEEEEEccCHHHHHHHHHHhcccC-C-----cEEEEEEeCCHHHHHh--------------
Confidence 345566677777664 34789999999999999994 3233 4 4 35678888753321
Q ss_pred hhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHH
Q 012349 102 DVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 102 ~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~ 181 (465)
...++ ++...+++++.+++.|++++|+|+....++++.+.
T Consensus 127 -----------~i~gv-----------------------------~V~~~~dl~eli~~~D~ViIAvPs~~~~ei~~~l~ 166 (215)
T 2vt3_A 127 -----------EVGGV-----------------------------PVYNLDDLEQHVKDESVAILTVPAVAAQSITDRLV 166 (215)
T ss_dssp -----------EETTE-----------------------------EEEEGGGHHHHCSSCCEEEECSCHHHHHHHHHHHH
T ss_pred -----------HhcCC-----------------------------eeechhhHHHHHHhCCEEEEecCchhHHHHHHHHH
Confidence 11111 23345778887766699999999988888888775
Q ss_pred H
Q 012349 182 R 182 (465)
Q Consensus 182 ~ 182 (465)
.
T Consensus 167 ~ 167 (215)
T 2vt3_A 167 A 167 (215)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.9e-05 Score=76.39 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=66.1
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...++|+|||.|.||..+|..+... | .+|..|+|+++. +. ... .
T Consensus 140 l~g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~-~~---------~~~--------------~------ 183 (307)
T 1wwk_A 140 LEGKTIGIIGFGRIGYQVAKIANAL-G-----MNILLYDPYPNE-ER---------AKE--------------V------ 183 (307)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCH-HH---------HHH--------------T------
T ss_pred cCCceEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCCCh-hh---------Hhh--------------c------
Confidence 3447999999999999999999877 7 899999998752 11 000 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-HHHHH-HHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-TKEVF-EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-l~~vl-~~l~~~l~~~~~~~ivIs~~k 198 (465)
++.. .+++++++.+|+|++++|... ++.++ ++..+.+++ ++++|.++-
T Consensus 184 --------------------------g~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lin~ar 233 (307)
T 1wwk_A 184 --------------------------NGKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKK---TAILINTSR 233 (307)
T ss_dssp --------------------------TCEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCT---TCEEEECSC
T ss_pred --------------------------Cccc-cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCC---CeEEEECCC
Confidence 1222 367788889999999999643 44444 334445665 688888877
Q ss_pred c
Q 012349 199 G 199 (465)
Q Consensus 199 G 199 (465)
|
T Consensus 234 g 234 (307)
T 1wwk_A 234 G 234 (307)
T ss_dssp G
T ss_pred C
Confidence 6
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.4e-05 Score=78.37 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=67.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.||..+|..+... | .+|..|+|+... +. ...
T Consensus 159 ~g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~-~~--------------------------~~~----- 200 (352)
T 3gg9_A 159 KGQTLGIFGYGKIGQLVAGYGRAF-G-----MNVLVWGRENSK-ER--------------------------ARA----- 200 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSHHHH-HH--------------------------HHH-----
T ss_pred CCCEEEEEeECHHHHHHHHHHHhC-C-----CEEEEECCCCCH-HH--------------------------HHh-----
Confidence 347999999999999999999877 7 899999987421 10 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.++....+++++++.+|+|++++|.. .++.++ ++..+.+++ ++++|.++.|
T Consensus 201 ------------------------~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRg 253 (352)
T 3gg9_A 201 ------------------------DGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKP---TALFVNTSRA 253 (352)
T ss_dssp ------------------------TTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSCG
T ss_pred ------------------------cCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCC---CcEEEECCCc
Confidence 02334467888899999999999943 444443 234445565 6889988877
Q ss_pred cc
Q 012349 200 VE 201 (465)
Q Consensus 200 i~ 201 (465)
=.
T Consensus 254 ~~ 255 (352)
T 3gg9_A 254 EL 255 (352)
T ss_dssp GG
T ss_pred hh
Confidence 43
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00013 Score=69.24 Aligned_cols=81 Identities=23% Similarity=0.358 Sum_probs=58.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+|.||..++..|.+. | ++| .+|++++. .+
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~-g-----~~lv~v~d~~~~-~~------------------------------------ 37 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN-G-----FEIAAILDVRGE-HE------------------------------------ 37 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEECSSCC-CT------------------------------------
T ss_pred CEEEEECCCHHHHHHHHHHhcC-C-----CEEEEEEecCcc-hh------------------------------------
Confidence 6999999999999999999866 6 776 68887741 10
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
. ..+|+++.+ .++|+|++|+|++...+++... +.. +..+++...+
T Consensus 38 ------------------------~--~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~---l~~---G~~vv~~~~~ 83 (236)
T 2dc1_A 38 ------------------------K--MVRGIDEFLQREMDVAVEAASQQAVKDYAEKI---LKA---GIDLIVLSTG 83 (236)
T ss_dssp ------------------------T--EESSHHHHTTSCCSEEEECSCHHHHHHHHHHH---HHT---TCEEEESCGG
T ss_pred ------------------------h--hcCCHHHHhcCCCCEEEECCCHHHHHHHHHHH---HHC---CCcEEEECcc
Confidence 1 235666766 6899999999988777766543 344 4566666544
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=73.35 Aligned_cols=82 Identities=21% Similarity=0.198 Sum_probs=59.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+++||+|||+|.||..++..|.+. . +.++. +++++++.++.. .. .+
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~---------a~-------------~~------ 49 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAAN-P----DLELVVIADPFIEGAQRL---------AE-------------AN------ 49 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHH---------HH-------------TT------
T ss_pred CceEEEEECCcHHHHHHHHHHHhC-C----CcEEEEEECCCHHHHHHH---------HH-------------Hc------
Confidence 358999999999999999998875 2 25655 788887644320 00 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHH
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~ 182 (465)
+....+|+++.+. ++|+|++|+|+....+++.....
T Consensus 50 --------------------------g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~ 87 (344)
T 3euw_A 50 --------------------------GAEAVASPDEVFARDDIDGIVIGSPTSTHVDLITRAVE 87 (344)
T ss_dssp --------------------------TCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHHHHHH
T ss_pred --------------------------CCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHHHHHH
Confidence 2345688888887 78999999999988777766543
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=4.6e-05 Score=78.80 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=67.7
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+..-++|+|||.|.||..+|..+... | .+|..|+|+.... ..
T Consensus 142 el~gktlGiIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~---- 183 (404)
T 1sc6_A 142 EARGKKLGIIGYGHIGTQLGILAESL-G-----MYVYFYDIENKLP----------------------------LG---- 183 (404)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCC----------------------------CT----
T ss_pred ccCCCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEEcCCchhc----------------------------cC----
Confidence 34457999999999999999999876 7 8999999865210 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~ 197 (465)
.+....+++++++.||+|++++|.. .++.++ ++....+++ ++++|.++
T Consensus 184 ---------------------------~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---ga~lIN~a 233 (404)
T 1sc6_A 184 ---------------------------NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP---GSLLINAS 233 (404)
T ss_dssp ---------------------------TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCT---TEEEEECS
T ss_pred ---------------------------CceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCC---CeEEEECC
Confidence 1233457888899999999999965 455554 334445665 68888888
Q ss_pred ccc
Q 012349 198 KGV 200 (465)
Q Consensus 198 kGi 200 (465)
.|=
T Consensus 234 Rg~ 236 (404)
T 1sc6_A 234 RGT 236 (404)
T ss_dssp CSS
T ss_pred CCh
Confidence 773
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=97.71 E-value=2e-05 Score=79.21 Aligned_cols=94 Identities=18% Similarity=0.288 Sum_probs=66.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++|+|||.|.||..+|..+... | .+|..|+|++...+. ..
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~dr~~~~~~~--------------------------~~------- 180 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKHF-G-----MKVLGVSRSGRERAG--------------------------FD------- 180 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCCTT--------------------------CS-------
T ss_pred cceEEEEEECHHHHHHHHHHHhC-C-----CEEEEEcCChHHhhh--------------------------hh-------
Confidence 47999999999999999999877 7 899999987632110 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
......+++++++.||+|++++|. ..++.++ ++....+++ ++++|.++.|=
T Consensus 181 ------------------------~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~---gailIN~aRG~ 233 (324)
T 3hg7_A 181 ------------------------QVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKP---GAILFNVGRGN 233 (324)
T ss_dssp ------------------------EEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCT---TCEEEECSCGG
T ss_pred ------------------------cccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCC---CcEEEECCCch
Confidence 011135678889999999999994 3445444 223334555 68999988874
Q ss_pred cc
Q 012349 201 EA 202 (465)
Q Consensus 201 ~~ 202 (465)
..
T Consensus 234 ~v 235 (324)
T 3hg7_A 234 AI 235 (324)
T ss_dssp GB
T ss_pred hh
Confidence 33
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00018 Score=71.59 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=57.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++||+|||+|.||..++..|.+..+ .++. +++++++.++++ .+. +
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~---------~~~------------~-------- 48 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNAD-----ARLVAVADAFPAAAEAI---------AGA------------Y-------- 48 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTT-----EEEEEEECSSHHHHHHH---------HHH------------T--------
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCC-----cEEEEEECCCHHHHHHH---------HHH------------h--------
Confidence 5799999999999999999987523 5655 788887644321 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHH
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~ 181 (465)
++. .+|+++.+. +.|+|++|+|+....+++....
T Consensus 49 -------------------------~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al 84 (331)
T 4hkt_A 49 -------------------------GCE-VRTIDAIEAAADIDAVVICTPTDTHADLIERFA 84 (331)
T ss_dssp -------------------------TCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred -------------------------CCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHH
Confidence 233 577888776 7899999999988877776654
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.6e-05 Score=78.37 Aligned_cols=93 Identities=23% Similarity=0.299 Sum_probs=65.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.||..+|..+... | .+|..|++++... ..
T Consensus 155 ~gktvGIIGlG~IG~~vA~~l~~~-G-----~~V~~yd~~~~~~----------------------------~~------ 194 (416)
T 3k5p_A 155 RGKTLGIVGYGNIGSQVGNLAESL-G-----MTVRYYDTSDKLQ----------------------------YG------ 194 (416)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECTTCCCC----------------------------BT------
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCcchhc----------------------------cc------
Confidence 347999999999999999998876 7 8999999875210 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
......+++++++.||+|++++|.. .++.++ ++....+++ ++++|.++-|
T Consensus 195 -------------------------~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~---gailIN~aRG 246 (416)
T 3k5p_A 195 -------------------------NVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKK---GAFLINNARG 246 (416)
T ss_dssp -------------------------TBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCT---TEEEEECSCT
T ss_pred -------------------------CcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCC---CcEEEECCCC
Confidence 1223467888899999999999963 454444 233344565 6889988877
Q ss_pred ccc
Q 012349 200 VEA 202 (465)
Q Consensus 200 i~~ 202 (465)
=..
T Consensus 247 ~vv 249 (416)
T 3k5p_A 247 SDV 249 (416)
T ss_dssp TSB
T ss_pred hhh
Confidence 433
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00012 Score=72.15 Aligned_cols=94 Identities=9% Similarity=0.094 Sum_probs=63.1
Q ss_pred CceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
++||+|||+|.||.. ++..|.+..+ .++. +++++++.+++. .+. .
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~---------a~~-------------~------ 52 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSER-----FEFVGAFTPNKVKREKI---------CSD-------------Y------ 52 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSS-----SEEEEEECSCHHHHHHH---------HHH-------------H------
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCC-----eEEEEEECCCHHHHHHH---------HHH-------------c------
Confidence 479999999999996 8887876412 4555 889987654431 100 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
++...+|+++.+.+.|+|++|+|+....+++..... . +..| .+-|-+
T Consensus 53 --------------------------~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~~al~---~---gk~v-l~EKP~ 99 (308)
T 3uuw_A 53 --------------------------RIMPFDSIESLAKKCDCIFLHSSTETHYEIIKILLN---L---GVHV-YVDKPL 99 (308)
T ss_dssp --------------------------TCCBCSCHHHHHTTCSEEEECCCGGGHHHHHHHHHH---T---TCEE-EECSSS
T ss_pred --------------------------CCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHHHHHH---C---CCcE-EEcCCC
Confidence 111257788888899999999999988877766543 3 3333 466655
Q ss_pred cc
Q 012349 201 EA 202 (465)
Q Consensus 201 ~~ 202 (465)
..
T Consensus 100 ~~ 101 (308)
T 3uuw_A 100 AS 101 (308)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00018 Score=72.00 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=63.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++||+|||+|.||..++..|.+..+ .++. +++++++.+++. .+. ..
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~--------~~~--------------~~------ 48 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDD-----AILYAISDVREDRLREM--------KEK--------------LG------ 48 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTT-----EEEEEEECSCHHHHHHH--------HHH--------------HT------
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCC-----cEEEEEECCCHHHHHHH--------HHH--------------hC------
Confidence 4799999999999999998876412 5554 788887644321 000 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
-..+.+|+++.+. ++|+|++|+|+....+++..... . +..|+ +-|-
T Consensus 49 -------------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---~---gk~v~-~EKP 96 (344)
T 3ezy_A 49 -------------------------VEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVIACAK---A---KKHVF-CEKP 96 (344)
T ss_dssp -------------------------CSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---T---TCEEE-EESC
T ss_pred -------------------------CCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHh---c---CCeEE-EECC
Confidence 0135678888777 78999999999987777665543 2 33343 6665
Q ss_pred ccc
Q 012349 200 VEA 202 (465)
Q Consensus 200 i~~ 202 (465)
+..
T Consensus 97 ~~~ 99 (344)
T 3ezy_A 97 LSL 99 (344)
T ss_dssp SCS
T ss_pred CCC
Confidence 443
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.65 E-value=3.9e-05 Score=76.59 Aligned_cols=87 Identities=23% Similarity=0.274 Sum_probs=64.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..++|+|||.|.||..+|..+... | .+|..|+|+.+..+
T Consensus 143 ~g~~vgIIG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~~----------------------------------- 181 (311)
T 2cuk_A 143 QGLTLGLVGMGRIGQAVAKRALAF-G-----MRVVYHARTPKPLP----------------------------------- 181 (311)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSSS-----------------------------------
T ss_pred CCCEEEEEEECHHHHHHHHHHHHC-C-----CEEEEECCCCcccc-----------------------------------
Confidence 447999999999999999999877 7 89999998763100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHH-HHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~-~l~~~l~~~~~~~ivIs~~kG 199 (465)
+. ..+++++++.+|+|++++|.. .++.++. +....+++ ++++|.++.|
T Consensus 182 --------------------------~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lin~srg 231 (311)
T 2cuk_A 182 --------------------------YP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKR---GAILLNTARG 231 (311)
T ss_dssp --------------------------SC-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCT---TCEEEECSCG
T ss_pred --------------------------cc-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCC---CcEEEECCCC
Confidence 00 135667788999999999976 4665553 34445665 6888888876
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00021 Score=70.54 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=89.4
Q ss_pred EeecchhHHHhHHHhhhhcCCCCCCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHH
Q 012349 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEV 96 (465)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~ 96 (465)
||.-|.||.. +.| . +++||+|+| +|.||..++..+.+..+ .+ |-+++++.....-
T Consensus 6 ~~~~~~~~~~-----~~m--~--~~irV~V~Ga~GrMGr~i~~~v~~~~~-----~eLvg~vd~~~~~~~G--------- 62 (288)
T 3ijp_A 6 HHHMGTLEAQ-----TQG--P--GSMRLTVVGANGRMGRELITAIQRRKD-----VELCAVLVRKGSSFVD--------- 62 (288)
T ss_dssp ------------------------CEEEEESSTTSHHHHHHHHHHHTCSS-----EEEEEEBCCTTCTTTT---------
T ss_pred ccccchhhhh-----hhc--c--CCeEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCCccccc---------
Confidence 5667887753 222 2 568999999 89999999999876522 44 4455665321000
Q ss_pred HhchhhhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHH
Q 012349 97 INSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEV 176 (465)
Q Consensus 97 i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~v 176 (465)
. ..-.+.++ + ..++.+++|+++++.++|+||-++++....+.
T Consensus 63 --~----------d~gel~G~----~----------------------~~gv~v~~dl~~ll~~aDVvIDFT~p~a~~~~ 104 (288)
T 3ijp_A 63 --K----------DASILIGS----D----------------------FLGVRITDDPESAFSNTEGILDFSQPQASVLY 104 (288)
T ss_dssp --S----------BGGGGTTC----S----------------------CCSCBCBSCHHHHTTSCSEEEECSCHHHHHHH
T ss_pred --c----------chHHhhcc----C----------------------cCCceeeCCHHHHhcCCCEEEEcCCHHHHHHH
Confidence 0 00001110 0 01456788999988999999999987776655
Q ss_pred HHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhH
Q 012349 177 FEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKW 256 (465)
Q Consensus 177 l~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~ 256 (465)
+.... .. +..+|+.+.|+..+. -+.|.+... .+.++..|||..-+.-= .+.
T Consensus 105 ~~~~l---~~---Gv~vViGTTG~~~e~---------~~~L~~aa~----~~~~~~a~N~SiGv~ll----------~~l 155 (288)
T 3ijp_A 105 ANYAA---QK---SLIHIIGTTGFSKTE---------EAQIADFAK----YTTIVKSGNMSLGVNLL----------ANL 155 (288)
T ss_dssp HHHHH---HH---TCEEEECCCCCCHHH---------HHHHHHHHT----TSEEEECSCCCHHHHHH----------HHH
T ss_pred HHHHH---Hc---CCCEEEECCCCCHHH---------HHHHHHHhC----cCCEEEECCCcHHHHHH----------HHH
Confidence 55543 33 456777777886541 133555442 24578899997633210 134
Q ss_pred HHHHHHHHcCCCCeEEe
Q 012349 257 RKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 257 ~~~l~~ll~~~g~~v~~ 273 (465)
++...+.|. .++.+.+
T Consensus 156 ~~~aa~~l~-~~~dieI 171 (288)
T 3ijp_A 156 VKRAAKALD-DDFDIEI 171 (288)
T ss_dssp HHHHHHHSC-TTSEEEE
T ss_pred HHHHHHhcC-CCCCEEE
Confidence 566677775 3555554
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00025 Score=74.81 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=49.4
Q ss_pred ceEEEECccHHHHHH--HHHHHHhcCCCC-CCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 44 LRIVGVGAGAWGSVF--TAMLQDSYGYLR-DKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 44 mkIaIIGaGamGsal--A~~La~~~G~~~-~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
|||+|||+|+.|.+. ...++.. ..+. ...+|.|+|.++++++.... ..+.- .+..
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~-~~l~~~~~ei~L~Di~~~rl~~~~~-----~~~~~-------------~~~~--- 58 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQT-DELSREDTHIYLMDVHERRLNASYI-----LARKY-------------VEEL--- 58 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTC-TTTCSTTCEEEEECSCHHHHHHHHH-----HHHHH-------------HHHH---
T ss_pred CEEEEECCCchhhHHHHHHHHHhh-HhcCCCCCEEEEECCCHHHHHHHHH-----HHHHH-------------HHHc---
Confidence 799999999987553 2334433 2221 11479999999876553110 01110 0100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL 168 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV 168 (465)
+. . ..+..|+|.++|+++||+||+++
T Consensus 59 -~~-~--------------------~~i~~t~d~~eAl~gAD~Vi~~~ 84 (477)
T 3u95_A 59 -NS-P--------------------VKVVKTESLDEAIEGADFIINTA 84 (477)
T ss_dssp -TC-C--------------------CEEEEESCHHHHHTTCSEEEECC
T ss_pred -CC-C--------------------eEEEEeCCHHHHhCCCCEEEECc
Confidence 00 0 14778999999999999999986
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=9.5e-05 Score=71.45 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=43.6
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..|-...+|-...--+.-|++. +. +... +|+|||+|.||.+++..|.+. | .+|++|+|+.+.++
T Consensus 90 ~~g~~~g~ntd~~g~~~~l~~~-~~-~l~~-~v~iiG~G~~g~~~a~~l~~~-g-----~~v~v~~r~~~~~~ 153 (263)
T 2d5c_A 90 VEGRLFGFNTDAPGFLEALKAG-GI-PLKG-PALVLGAGGAGRAVAFALREA-G-----LEVWVWNRTPQRAL 153 (263)
T ss_dssp ETTEEEEECCHHHHHHHHHHHT-TC-CCCS-CEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHH
T ss_pred cCCeEEEeCCCHHHHHHHHHHh-CC-CCCC-eEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 3455555565443333334332 21 2234 899999999999999999988 7 68999999876443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00014 Score=65.85 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=33.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.++|.|+|+|.+|..+|..|.+..| ++|++++++++.++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g-----~~V~vid~~~~~~~~ 78 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYG-----KISLGIEIREEAAQQ 78 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHC-----SCEEEEESCHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccC-----CeEEEEECCHHHHHH
Confidence 4689999999999999999976414 899999999875543
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00026 Score=70.90 Aligned_cols=96 Identities=19% Similarity=0.156 Sum_probs=63.7
Q ss_pred CceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La-~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
++||+|||+|.||..++..+. +..+ .++. +++++++.+++. .+. +
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~-----~~l~av~d~~~~~~~~~---------~~~------------~------- 48 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSG-----AEIVAVTDVNQEAAQKV---------VEQ------------Y------- 48 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSS-----EEEEEEECSSHHHHHHH---------HHH------------T-------
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCC-----cEEEEEEcCCHHHHHHH---------HHH------------h-------
Confidence 479999999999999999998 4312 5544 788887644321 000 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
+ + ...+.+|+++.+.+ .|+|++|+|+....+++.... .. +..| .+-|
T Consensus 49 -g---~--------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~~---Gk~v-l~EK 97 (344)
T 3mz0_A 49 -Q---L--------------------NATVYPNDDSLLADENVDAVLVTSWGPAHESSVLKAI---KA---QKYV-FCEK 97 (344)
T ss_dssp -T---C--------------------CCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEE-EECS
T ss_pred -C---C--------------------CCeeeCCHHHHhcCCCCCEEEECCCchhHHHHHHHHH---HC---CCcE-EEcC
Confidence 0 0 13467888888765 899999999998877776554 33 3333 3566
Q ss_pred cccc
Q 012349 199 GVEA 202 (465)
Q Consensus 199 Gi~~ 202 (465)
-+..
T Consensus 98 P~a~ 101 (344)
T 3mz0_A 98 PLAT 101 (344)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 5543
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00011 Score=74.16 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=66.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...++|+|||.|.||..+|..+... | .+|..|+|+.... . ....
T Consensus 163 l~g~tvgIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~-~--------------------------~~~~--- 206 (335)
T 2g76_A 163 LNGKTLGILGLGRIGREVATRMQSF-G-----MKTIGYDPIISPE-V--------------------------SASF--- 206 (335)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSSCHH-H--------------------------HHHT---
T ss_pred CCcCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCCcchh-h--------------------------hhhc---
Confidence 3457999999999999999999866 6 8999999876421 0 0000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~k 198 (465)
.+.. .+++++++.+|+|++++|.. .++.++ ++..+.+++ ++++|.++-
T Consensus 207 --------------------------g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~ar 256 (335)
T 2g76_A 207 --------------------------GVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKK---GVRVVNCAR 256 (335)
T ss_dssp --------------------------TCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCT---TEEEEECSC
T ss_pred --------------------------Ccee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCC---CcEEEECCC
Confidence 1222 36788899999999999975 455555 345555665 678888776
Q ss_pred c
Q 012349 199 G 199 (465)
Q Consensus 199 G 199 (465)
|
T Consensus 257 g 257 (335)
T 2g76_A 257 G 257 (335)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00012 Score=72.96 Aligned_cols=81 Identities=15% Similarity=0.086 Sum_probs=57.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+++||+|||+|.||..++..|.+. . +.+|. +++++++.+++. .+. +
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~--------~~~-------------~------- 50 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRES-A----QAEVRGIASRRLENAQKM--------AKE-------------L------- 50 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHS-S----SEEEEEEBCSSSHHHHHH--------HHH-------------T-------
T ss_pred CeEEEEEECchHHHHHHHHHHHhC-C----CcEEEEEEeCCHHHHHHH--------HHH-------------c-------
Confidence 458999999999999999999875 2 25655 788887654321 000 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCcchHHHHHHHHH
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~ 181 (465)
++ .+.+|+++.+. ++|+|++|+|+....+++....
T Consensus 51 --------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al 88 (330)
T 3e9m_A 51 --------------------------AIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAKLAL 88 (330)
T ss_dssp --------------------------TCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHHHHHH
T ss_pred --------------------------CCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHHHHH
Confidence 11 23577888776 7899999999998877766544
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=9.3e-05 Score=74.92 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=64.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++|+|||.|.||..+|..+... | .+|..|+|+.+. . ...
T Consensus 148 gktvgIiGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~-~---------------------------~~~------ 187 (343)
T 2yq5_A 148 NLTVGLIGVGHIGSAVAEIFSAM-G-----AKVIAYDVAYNP-E---------------------------FEP------ 187 (343)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCG-G---------------------------GTT------
T ss_pred CCeEEEEecCHHHHHHHHHHhhC-C-----CEEEEECCChhh-h---------------------------hhc------
Confidence 37999999999999999999876 7 899999998641 0 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.... .+++++++.||+|++++|. ..++.++ ++....+++ ++++|.++-|=
T Consensus 188 ------------------------~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~---gailIN~aRg~ 239 (343)
T 2yq5_A 188 ------------------------FLTY-TDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKK---SAYLINCARGE 239 (343)
T ss_dssp ------------------------TCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TCEEEECSCGG
T ss_pred ------------------------cccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCC---CcEEEECCCCh
Confidence 1122 3788889999999999995 2333333 233344565 68899888774
Q ss_pred c
Q 012349 201 E 201 (465)
Q Consensus 201 ~ 201 (465)
.
T Consensus 240 ~ 240 (343)
T 2yq5_A 240 L 240 (343)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=6.2e-05 Score=75.82 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=63.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.++|+|||.|.||.++|..+... | .+|..|+|+.+.. ... .
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~-----------~~~-------------~--------- 186 (333)
T 1j4a_A 146 DQVVGVVGTGHIGQVFMQIMEGF-G-----AKVITYDIFRNPE-----------LEK-------------K--------- 186 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHH-----------HHH-------------T---------
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEECCCcchh-----------HHh-------------h---------
Confidence 37999999999999999999877 7 8999999986421 000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+....++++++..+|+|++++|.. .++.++ +.....+++ ++++|.++-|
T Consensus 187 -------------------------~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~---ga~lIn~arg 237 (333)
T 1j4a_A 187 -------------------------GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ---DVVIVNVSRG 237 (333)
T ss_dssp -------------------------TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCT---TEEEEECSCG
T ss_pred -------------------------CeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCC---CcEEEECCCC
Confidence 001235778888999999999954 355444 233445565 6788888776
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00017 Score=71.87 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=66.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+ |.+|++++..|+.. |. .++|.++++++. +. ...-+.. ... +
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~-~~---~~ev~L~Di~~~--~~-----~a~dL~~-------------~~~------~ 50 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS-PL---VSRLTLYDIAHT--PG-----VAADLSH-------------IET------R 50 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC-TT---CSEEEEEESSSH--HH-----HHHHHTT-------------SSS------S
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CC---CcEEEEEeCCcc--HH-----HHHHHhc-------------cCc------C
Confidence 79999998 99999999999977 53 168999999872 11 0000100 000 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEE---ecCHHHHhcCCCEEEEecC--c--------------chHHHHHHHHHHh
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKV---VTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISRY 183 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~---t~dl~eal~~aDiVIlaVp--s--------------~~l~~vl~~l~~~ 183 (465)
..+.. ++|++++++++|+||++.. . ..++++++.+.++
T Consensus 51 -----------------------~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~ 107 (314)
T 1mld_A 51 -----------------------ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH 107 (314)
T ss_dssp -----------------------CEEEEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------ceEEEecCCCCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 02444 3678888999999999873 2 2366666777666
Q ss_pred hhccCCCCEEEEeecccc
Q 012349 184 WKERITVPVIISLAKGVE 201 (465)
Q Consensus 184 l~~~~~~~ivIs~~kGi~ 201 (465)
.+ +.+++.++|-++
T Consensus 108 ~p----~a~viv~sNPv~ 121 (314)
T 1mld_A 108 CP----DAMICIISNPVN 121 (314)
T ss_dssp CT----TSEEEECSSCHH
T ss_pred CC----CeEEEEECCCcc
Confidence 53 567777787654
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00034 Score=70.60 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=64.6
Q ss_pred CCceEEEECccHHHHHHHHHHH-HhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La-~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+++||+|||+|.||..++..+. +..+ .++. +++++++.+++. .+. +
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~---------a~~------------~------ 69 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVSG-----VEVVAVCDIVAGRAQAA---------LDK------------Y------ 69 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCTT-----EEEEEEECSSTTHHHHH---------HHH------------H------
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCCC-----cEEEEEEeCCHHHHHHH---------HHH------------h------
Confidence 3579999999999999999998 3312 5644 889988654421 000 0
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
+ + .....+|+++.+. +.|+|++|+|+....+++..... . +..| .+-
T Consensus 70 --g---~--------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---a---Gk~V-l~E 117 (357)
T 3ec7_A 70 --A---I--------------------EAKDYNDYHDLINDKDVEVVIITASNEAHADVAVAALN---A---NKYV-FCE 117 (357)
T ss_dssp --T---C--------------------CCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---T---TCEE-EEE
T ss_pred --C---C--------------------CCeeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---C---CCCE-Eee
Confidence 0 0 1345678888776 48999999999988777766543 2 3333 466
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
|-+..
T Consensus 118 KPla~ 122 (357)
T 3ec7_A 118 KPLAV 122 (357)
T ss_dssp SSSCS
T ss_pred cCccC
Confidence 66543
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=5.5e-05 Score=76.13 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=66.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..++|+|||.|.||.++|..+... | .+|..|+|++...+. ....
T Consensus 144 ~g~tvGIIG~G~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~~~--------------------------~~~~---- 187 (330)
T 4e5n_A 144 DNATVGFLGMGAIGLAMADRLQGW-G-----ATLQYHEAKALDTQT--------------------------EQRL---- 187 (330)
T ss_dssp TTCEEEEECCSHHHHHHHHHTTTS-C-----CEEEEECSSCCCHHH--------------------------HHHH----
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCCCCcHhH--------------------------HHhc----
Confidence 347999999999999999998766 6 899999998632211 0000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+.. .+++++++.+|+|++++|.. .++.++ ++....+++ ++++|.++.|
T Consensus 188 -------------------------g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~---gailIN~arg 238 (330)
T 4e5n_A 188 -------------------------GLRQ-VACSELFASSDFILLALPLNADTLHLVNAELLALVRP---GALLVNPCRG 238 (330)
T ss_dssp -------------------------TEEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSCG
T ss_pred -------------------------Ccee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCC---CcEEEECCCC
Confidence 1222 36788889999999999953 444444 344555665 6888888877
Q ss_pred c
Q 012349 200 V 200 (465)
Q Consensus 200 i 200 (465)
=
T Consensus 239 ~ 239 (330)
T 4e5n_A 239 S 239 (330)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00028 Score=70.30 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=63.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+++||+|||+|.||..++..+.+. + +.+ |.+++++++.+++. ...
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~-~----~~~~~av~d~~~~~~~~~-------------------------a~~---- 49 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLA-G----NGEVVAVSSRTLESAQAF-------------------------ANK---- 49 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHH-C----SEEEEEEECSCSSTTCC----------------------------C----
T ss_pred CceEEEEEechHHHHHHHHHHHhC-C----CcEEEEEEcCCHHHHHHH-------------------------HHH----
Confidence 457999999999999999998876 3 144 44788887644320 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
+ ++ .+.+|.++.+. +.|+|++|+|+....+++.... .. +..| .+-
T Consensus 50 -----~--------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---Gk~V-l~E 97 (329)
T 3evn_A 50 -----Y--------------------HLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKAAL---LA---GKHV-LVE 97 (329)
T ss_dssp -----C--------------------CCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHHHHHH---HT---TCEE-EEE
T ss_pred -----c--------------------CCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHH---HC---CCeE-EEc
Confidence 0 11 25688888887 7899999999988777766543 33 3333 366
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
|-+..
T Consensus 98 KP~a~ 102 (329)
T 3evn_A 98 KPFTL 102 (329)
T ss_dssp SSCCS
T ss_pred cCCcC
Confidence 66543
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00029 Score=68.99 Aligned_cols=148 Identities=12% Similarity=0.092 Sum_probs=89.1
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
||||+|+| +|.||..++..+.+..+ .++. +++|+.....- . ....+-+.
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~-----~eLv~~~d~~~~~~~G-----------~----------d~gel~g~--- 57 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPD-----ATLVGALDRTGSPQLG-----------Q----------DAGAFLGK--- 57 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTT-----EEEEEEBCCTTCTTTT-----------S----------BTTTTTTC---
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEEecCccccc-----------c----------cHHHHhCC---
Confidence 58999999 89999999999887622 5543 45665421100 0 00000010
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
. .++.+++|+++++.++|+||-++++....+.++.... . +..+|+.+.|+
T Consensus 58 -----------------------~-~gv~v~~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~---~---G~~vVigTTG~ 107 (272)
T 4f3y_A 58 -----------------------Q-TGVALTDDIERVCAEADYLIDFTLPEGTLVHLDAALR---H---DVKLVIGTTGF 107 (272)
T ss_dssp -----------------------C-CSCBCBCCHHHHHHHCSEEEECSCHHHHHHHHHHHHH---H---TCEEEECCCCC
T ss_pred -----------------------C-CCceecCCHHHHhcCCCEEEEcCCHHHHHHHHHHHHH---c---CCCEEEECCCC
Confidence 0 1345678999888899999999998877766665543 3 45677777788
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEe
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
+.+. . +.|.+... ...++..|||.--+.-= .+.++..++.|. .++.+.+
T Consensus 108 s~~~--------~-~~L~~aa~----~~~vv~a~N~s~Gv~l~----------~~~~~~aa~~l~-~~~diei 156 (272)
T 4f3y_A 108 SEPQ--------K-AQLRAAGE----KIALVFSANMSVGVNVT----------MKLLEFAAKQFA-QGYDIEI 156 (272)
T ss_dssp CHHH--------H-HHHHHHTT----TSEEEECSCCCHHHHHH----------HHHHHHHHHHTS-SSCEEEE
T ss_pred CHHH--------H-HHHHHHhc----cCCEEEECCCCHHHHHH----------HHHHHHHHHhcC-cCCCEEE
Confidence 6541 1 33444432 24568899987633210 134566667775 3455544
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00046 Score=69.48 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=63.1
Q ss_pred CCceEEEECccHHHH-HHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGs-alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+++||+|||+|.||. .++..|.+. . +.+|. +++++++.+++. .+. +
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~--------a~~-------------~------ 73 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAE-P----LTEVTAIASRRWDRAKRF--------TER-------------F------ 73 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHC-T----TEEEEEEEESSHHHHHHH--------HHH-------------H------
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhC-C----CeEEEEEEcCCHHHHHHH--------HHH-------------c------
Confidence 357999999999998 788888765 2 25654 888887644321 000 0
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
++...+|+++.+. +.|+|++|+|.....+++..... . +..| .+-
T Consensus 74 ---------------------------g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---a---Gk~V-l~E 119 (350)
T 3rc1_A 74 ---------------------------GGEPVEGYPALLERDDVDAVYVPLPAVLHAEWIDRALR---A---GKHV-LAE 119 (350)
T ss_dssp ---------------------------CSEEEESHHHHHTCTTCSEEEECCCGGGHHHHHHHHHH---T---TCEE-EEE
T ss_pred ---------------------------CCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---C---CCcE-EEe
Confidence 1233478888775 58999999999988777766543 2 3333 466
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
|-+..
T Consensus 120 KP~a~ 124 (350)
T 3rc1_A 120 KPLTT 124 (350)
T ss_dssp SSSCS
T ss_pred CCCCC
Confidence 66544
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00028 Score=70.96 Aligned_cols=95 Identities=20% Similarity=0.366 Sum_probs=62.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+++||+|||+|.||..++..+.+. . +.+ |.+++++++.+++. .+. +
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~-~----~~~lvav~d~~~~~~~~~--------~~~-------------~------- 50 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKS-E----KLKLVTCYSRTEDKREKF--------GKR-------------Y------- 50 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTC-S----SEEEEEEECSSHHHHHHH--------HHH-------------H-------
T ss_pred CcceEEEEccCHHHHHHHHHHHhC-C----CcEEEEEECCCHHHHHHH--------HHH-------------c-------
Confidence 457999999999999999988764 2 256 44888887654321 000 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh--cCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV--WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal--~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
++...+|+++++ .+.|+|++|+|+....+++..... . +..| .+-|
T Consensus 51 --------------------------g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~---~---gk~v-l~EK 97 (354)
T 3db2_A 51 --------------------------NCAGDATMEALLAREDVEMVIITVPNDKHAEVIEQCAR---S---GKHI-YVEK 97 (354)
T ss_dssp --------------------------TCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHHHHHH---T---TCEE-EEES
T ss_pred --------------------------CCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---c---CCEE-EEcc
Confidence 111256778877 568999999999877776665433 2 3333 4666
Q ss_pred cccc
Q 012349 199 GVEA 202 (465)
Q Consensus 199 Gi~~ 202 (465)
-+..
T Consensus 98 P~~~ 101 (354)
T 3db2_A 98 PISV 101 (354)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 5543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00037 Score=61.37 Aligned_cols=105 Identities=6% Similarity=-0.002 Sum_probs=64.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc-hhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG-RSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~-~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++|.|+|+|.+|..++..|.+. | ++|+++++++ +..+.+. +....+ ...+.+
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~-g-----~~V~vid~~~~~~~~~~~-----~~~~~~----------~~~i~g------ 56 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR-G-----QNVTVISNLPEDDIKQLE-----QRLGDN----------ADVIPG------ 56 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCCHHHHHHHH-----HHHCTT----------CEEEES------
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCChHHHHHHH-----HhhcCC----------CeEEEc------
Confidence 5899999999999999999988 7 8999999974 4332211 000000 000100
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHH-hcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEA-VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~ea-l~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
+ ..-...+.++ +.++|+||++++.+.....+....+.+.+ ...++..+++-.
T Consensus 57 d------------------------~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~---~~~ii~~~~~~~ 109 (153)
T 1id1_A 57 D------------------------SNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSS---DVKTVLAVSDSK 109 (153)
T ss_dssp C------------------------TTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTS---SSCEEEECSSGG
T ss_pred C------------------------CCCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHHHHCC---CCEEEEEECCHH
Confidence 0 0000123344 78999999999998776666555554433 345666666554
Q ss_pred c
Q 012349 202 A 202 (465)
Q Consensus 202 ~ 202 (465)
.
T Consensus 110 ~ 110 (153)
T 1id1_A 110 N 110 (153)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00032 Score=61.95 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=65.0
Q ss_pred HHHhhhhcCCCCCCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHH
Q 012349 30 DELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLR 105 (465)
Q Consensus 30 ~~~~~~~~~~~~~~mkIaIIGa----GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~ 105 (465)
+.++++|.. +.+|+|||+ |.+|..++..|.+. | ++ +|..++.. +.
T Consensus 13 ~~l~~ll~~----p~~iaVVGas~~~g~~G~~~~~~l~~~-G-----~~--v~~Vnp~~-~~------------------ 61 (144)
T 2d59_A 13 EDIREILTR----YKKIALVGASPKPERDANIVMKYLLEH-G-----YD--VYPVNPKY-EE------------------ 61 (144)
T ss_dssp HHHHHHHHH----CCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CE--EEEECTTC-SE------------------
T ss_pred HHHHHHHcC----CCEEEEEccCCCCCchHHHHHHHHHHC-C-----CE--EEEECCCC-Ce------------------
Confidence 346666621 468999999 79999999999887 7 65 67766631 10
Q ss_pred hhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhh
Q 012349 106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185 (465)
Q Consensus 106 ~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~ 185 (465)
+. ++.+..++++.....|+++++||+....++++++...-.
T Consensus 62 --------i~-------------------------------G~~~y~sl~~l~~~vDlvvi~vp~~~~~~vv~~~~~~gi 102 (144)
T 2d59_A 62 --------VL-------------------------------GRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKKGA 102 (144)
T ss_dssp --------ET-------------------------------TEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHHTC
T ss_pred --------EC-------------------------------CeeccCCHHHcCCCCCEEEEEeCHHHHHHHHHHHHHcCC
Confidence 11 123334555555578999999999999999988765321
Q ss_pred ccCCCCEEEEeecccc
Q 012349 186 ERITVPVIISLAKGVE 201 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~ 201 (465)
+ .+.++.|..
T Consensus 103 ----~--~i~~~~g~~ 112 (144)
T 2d59_A 103 ----K--VVWFQYNTY 112 (144)
T ss_dssp ----S--EEEECTTCC
T ss_pred ----C--EEEECCCch
Confidence 2 234667765
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00035 Score=69.10 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=29.7
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~ 86 (465)
+++||+|||+|.||.. ++..+.+..+ .++. +++++++..+
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~-----~~lvav~d~~~~~~~ 45 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAAASD-----WTLQGAWSPTRAKAL 45 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHSCSS-----EEEEEEECSSCTTHH
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCC-----eEEEEEECCCHHHHH
Confidence 3589999999999996 8887765413 5655 8899886543
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=97.51 E-value=9e-05 Score=74.56 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=64.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.++|+|||.|.||..+|..+... | .+|..|+|+.+.. ...
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~~------ 185 (331)
T 1xdw_A 146 NCTVGVVGLGRIGRVAAQIFHGM-G-----ATVIGEDVFEIKG----------------------------IED------ 185 (331)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCS----------------------------CTT------
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCccHH----------------------------HHh------
Confidence 37999999999999999999876 7 8999999876311 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+. ..++++++..+|+|++++|.. .++.++ ++..+.+++ ++++|.++.|=
T Consensus 186 ------------------------~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~---ga~lin~srg~ 237 (331)
T 1xdw_A 186 ------------------------YCT-QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKD---GAILVNCARGQ 237 (331)
T ss_dssp ------------------------TCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCT---TEEEEECSCGG
T ss_pred ------------------------ccc-cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCC---CcEEEECCCcc
Confidence 011 236778889999999999964 444444 234445565 67888888773
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00029 Score=69.27 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
..++|+|||+|.+|.++|..+... | .+|++|+|+.+.
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~-G-----~~V~~~dr~~~~ 190 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAAL-G-----AKVKVGARESDL 190 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSHHH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEECCHHH
Confidence 457999999999999999999877 7 799999998753
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00015 Score=72.72 Aligned_cols=38 Identities=11% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++|||+|+| +|.+|.+++..|+.. |. .++|.+++++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~-g~---~~ev~l~Di~~~ 45 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMN-PL---VSVLHLYDVVNA 45 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHC-TT---EEEEEEEESSSH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhC-CC---CCEEEEEeCCCc
Confidence 568999999 799999999999876 52 168999998874
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=7.2e-05 Score=75.91 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=55.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+.++|+|||+|.||.+++..|....+ ..+|.+|+|++++.+++ .+.+.. .+++
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~----~~~V~V~~r~~~~a~~l-----a~~~~~--------------~~g~---- 180 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLG----IEEIVAYDTDPLATAKL-----IANLKE--------------YSGL---- 180 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSC----CCEEEEECSSHHHHHHH-----HHHHTT--------------CTTC----
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCC----CcEEEEEcCCHHHHHHH-----HHHHHh--------------ccCc----
Confidence 45799999999999999988765312 16899999998765531 111100 0010
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~ 171 (465)
.+...+++++++.++|+||.|||+.
T Consensus 181 -------------------------~~~~~~~~~eav~~aDiVi~aTps~ 205 (350)
T 1x7d_A 181 -------------------------TIRRASSVAEAVKGVDIITTVTADK 205 (350)
T ss_dssp -------------------------EEEECSSHHHHHTTCSEEEECCCCS
T ss_pred -------------------------eEEEeCCHHHHHhcCCEEEEeccCC
Confidence 2445678889999999999999986
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00023 Score=72.58 Aligned_cols=92 Identities=18% Similarity=0.172 Sum_probs=64.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++|+|||.|.||..+|..+... | .+|..|+++... +. ...
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~f-G-----~~V~~~d~~~~~-~~--------------------------~~~------ 216 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSGF-R-----ARIRVFDPWLPR-SM--------------------------LEE------ 216 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTTS-C-----CEEEEECSSSCH-HH--------------------------HHH------
T ss_pred CCEEEEecCCcccHHHHHhhhhC-C-----CEEEEECCCCCH-HH--------------------------Hhh------
Confidence 47999999999999999998755 6 899999987521 10 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
..+. ..+++++++.+|+|++++|.. .++.++ ++....+++ ++++|.++-|=
T Consensus 217 -----------------------~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~---gailIN~aRG~ 269 (365)
T 4hy3_A 217 -----------------------NGVE-PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRR---GAAFILLSRAD 269 (365)
T ss_dssp -----------------------TTCE-ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCT---TCEEEECSCGG
T ss_pred -----------------------cCee-eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCC---CcEEEECcCCc
Confidence 0122 247888899999999999954 555555 344455666 68899888773
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00013 Score=73.42 Aligned_cols=89 Identities=13% Similarity=0.180 Sum_probs=63.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.++|+|||.|.||..+|..+... | .+|..|+|+.... ...
T Consensus 145 g~~vgIiG~G~IG~~~A~~l~~~-G-----~~V~~~d~~~~~~----------------------------~~~------ 184 (333)
T 1dxy_A 145 QQTVGVMGTGHIGQVAIKLFKGF-G-----AKVIAYDPYPMKG----------------------------DHP------ 184 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSS----------------------------CCT------
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEECCCcchh----------------------------hHh------
Confidence 47999999999999999999876 7 8999999876310 000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.... .+++++++.+|+|++++|.. .++.++ ++....+++ ++++|.++-|
T Consensus 185 ------------------------~~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~---ga~lIn~srg 235 (333)
T 1dxy_A 185 ------------------------DFDY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP---GAIVINTARP 235 (333)
T ss_dssp ------------------------TCEE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCT---TEEEEECSCT
T ss_pred ------------------------cccc-CCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCC---CcEEEECCCC
Confidence 0112 36778889999999999964 344444 334445665 6788887766
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00029 Score=69.41 Aligned_cols=95 Identities=21% Similarity=0.255 Sum_probs=63.6
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+...++|+|||+|.+|.++|..+... | .+|++|+|+.+..+. +.+ + +.
T Consensus 154 ~l~g~~v~IiG~G~iG~~~a~~l~~~-G-----~~V~~~d~~~~~~~~---------~~~--------------~-g~-- 201 (300)
T 2rir_A 154 TIHGSQVAVLGLGRTGMTIARTFAAL-G-----ANVKVGARSSAHLAR---------ITE--------------M-GL-- 201 (300)
T ss_dssp CSTTSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHH---------HHH--------------T-TC--
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH---------HHH--------------C-CC--
Confidence 33458999999999999999999877 7 799999998753321 000 0 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
......++++.++.+|+|++++|...+.+ .....+++ +.++|.++-|
T Consensus 202 ---------------------------~~~~~~~l~~~l~~aDvVi~~~p~~~i~~---~~~~~mk~---g~~lin~a~g 248 (300)
T 2rir_A 202 ---------------------------VPFHTDELKEHVKDIDICINTIPSMILNQ---TVLSSMTP---KTLILDLASR 248 (300)
T ss_dssp ---------------------------EEEEGGGHHHHSTTCSEEEECCSSCCBCH---HHHTTSCT---TCEEEECSST
T ss_pred ---------------------------eEEchhhHHHHhhCCCEEEECCChhhhCH---HHHHhCCC---CCEEEEEeCC
Confidence 00012456777889999999999854322 22234555 5778877754
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00066 Score=67.66 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=56.0
Q ss_pred CCceEEEECccHHHHHHHHHHH-HhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQ-DSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La-~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+++||+|||+|.||..++..+. +..+ .+ |.+++++++.++.. .+ .+
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~-----~~~vav~d~~~~~~~~~---------a~-------------~~----- 54 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQG-----VKLVAACALDSNQLEWA---------KN-------------EL----- 54 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSS-----EEEEEEECSCHHHHHHH---------HH-------------TT-----
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCC-----cEEEEEecCCHHHHHHH---------HH-------------Hh-----
Confidence 4689999999999999999987 4313 55 56788887644320 00 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCcchHHHHHHHH
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l 180 (465)
++ .+.+|.++.+. ++|+|++|+|+....+++...
T Consensus 55 ---------------------------g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~a 91 (346)
T 3cea_A 55 ---------------------------GVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMTIYA 91 (346)
T ss_dssp ---------------------------CCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHHHHH
T ss_pred ---------------------------CCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHHHHH
Confidence 11 34577888775 689999999998777666654
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00036 Score=68.97 Aligned_cols=92 Identities=15% Similarity=0.276 Sum_probs=62.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+++||+|||+|.||..++..|.+. + +.+ |.+++++++.+++ +..
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~-~----~~~~v~v~d~~~~~~~~--------------------------~~~---- 53 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGL-P----GAALVRLASSNPDNLAL--------------------------VPP---- 53 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHC-T----TEEEEEEEESCHHHHTT--------------------------CCT----
T ss_pred CcceEEEECCcHHHHHHHHHHHhC-C----CcEEEEEEeCCHHHHHH--------------------------HHh----
Confidence 458999999999999999999875 2 155 5588888753321 100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
.+...+|.++++. ++|+|++|+|+....+++.... +. +..|+ +-|
T Consensus 54 --------------------------~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al---~~---Gk~v~-~eK 100 (315)
T 3c1a_A 54 --------------------------GCVIESDWRSVVSAPEVEAVIIATPPATHAEITLAAI---AS---GKAVL-VEK 100 (315)
T ss_dssp --------------------------TCEEESSTHHHHTCTTCCEEEEESCGGGHHHHHHHHH---HT---TCEEE-EES
T ss_pred --------------------------hCcccCCHHHHhhCCCCCEEEEeCChHHHHHHHHHHH---HC---CCcEE-EcC
Confidence 1234567777775 7899999999998877776543 33 34444 566
Q ss_pred ccc
Q 012349 199 GVE 201 (465)
Q Consensus 199 Gi~ 201 (465)
-+.
T Consensus 101 P~~ 103 (315)
T 3c1a_A 101 PLT 103 (315)
T ss_dssp SSC
T ss_pred CCc
Confidence 543
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00013 Score=74.79 Aligned_cols=92 Identities=23% Similarity=0.242 Sum_probs=63.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..++|+|||.|.||..+|..+... | .+|..|++..+... .
T Consensus 118 ~gktvGIIGlG~IG~~vA~~l~a~-G-----~~V~~~d~~~~~~~----------------------------~------ 157 (381)
T 3oet_A 118 RDRTIGIVGVGNVGSRLQTRLEAL-G-----IRTLLCDPPRAARG----------------------------D------ 157 (381)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECHHHHHTT----------------------------C------
T ss_pred CCCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEECCChHHhc----------------------------c------
Confidence 347999999999999999999877 7 89999987532100 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-h----HHHHH-HHHHHhhhccCCCCEEEE
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-E----TKEVF-EEISRYWKERITVPVIIS 195 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~----l~~vl-~~l~~~l~~~~~~~ivIs 195 (465)
.. ...+++++++.||+|++++|.. . ++.++ ++....+++ ++++|.
T Consensus 158 -------------------------~~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~---gailIN 208 (381)
T 3oet_A 158 -------------------------EG-DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKP---GAILIN 208 (381)
T ss_dssp -------------------------CS-CBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCT---TEEEEE
T ss_pred -------------------------Cc-ccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCC---CcEEEE
Confidence 00 1246788899999999999943 2 33333 233344555 688988
Q ss_pred eeccccc
Q 012349 196 LAKGVEA 202 (465)
Q Consensus 196 ~~kGi~~ 202 (465)
++-|=..
T Consensus 209 ~aRG~vv 215 (381)
T 3oet_A 209 ACRGPVV 215 (381)
T ss_dssp CSCGGGB
T ss_pred CCCCccc
Confidence 8877433
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.42 E-value=8.9e-05 Score=76.05 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...++|+|||.|.||..+|..|... | .+|..|+++.+.. . . +
T Consensus 114 l~g~tvGIIGlG~IG~~vA~~l~~~-G-----~~V~~~d~~~~~~-------------~--------------~-g---- 155 (380)
T 2o4c_A 114 LAERTYGVVGAGQVGGRLVEVLRGL-G-----WKVLVCDPPRQAR-------------E--------------P-D---- 155 (380)
T ss_dssp GGGCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECHHHHHH-------------S--------------T-T----
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHC-C-----CEEEEEcCChhhh-------------c--------------c-C----
Confidence 3457999999999999999999877 7 8999998764210 0 0 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch-----HHHHH-HHHHHhhhccCCCCEEE
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE-----TKEVF-EEISRYWKERITVPVII 194 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~-----l~~vl-~~l~~~l~~~~~~~ivI 194 (465)
.. ..+++++++.||+|++++|... ++.++ ++....+++ ++++|
T Consensus 156 ---------------------------~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~---gailI 204 (380)
T 2o4c_A 156 ---------------------------GE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRP---GTWLV 204 (380)
T ss_dssp ---------------------------SC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCT---TEEEE
T ss_pred ---------------------------cc-cCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCC---CcEEE
Confidence 00 1457788889999999999543 44444 334455665 67888
Q ss_pred Eeeccc
Q 012349 195 SLAKGV 200 (465)
Q Consensus 195 s~~kGi 200 (465)
.++.|=
T Consensus 205 N~sRG~ 210 (380)
T 2o4c_A 205 NASRGA 210 (380)
T ss_dssp ECSCGG
T ss_pred ECCCCc
Confidence 888773
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00056 Score=68.51 Aligned_cols=110 Identities=14% Similarity=0.159 Sum_probs=68.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecC----chhhhhhhhhhhHHHHhchhhhHHhhhhccccc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRP----GRSVDRATAEHLFEVINSREDVLRRLIRRCAYL 114 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~----~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l 114 (465)
++|||+|+|+ |.+|+.++..|+.. |.+. ...+|.+++++ ++.++. ...-+... ..
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~-~~~~~~~~~ev~l~Di~~~~~~~~~~g-----~~~dl~~~------------~~ 65 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANG-DMLGKDQPVILQLLEIPNEKAQKALQG-----VMMEIDDC------------AF 65 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTT-TTTCTTCCEEEEEECCSCHHHHHHHHH-----HHHHHHTT------------TC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhC-CCcCCCCCCEEEEEcCCCccccccchh-----hHHHHhhh------------cc
Confidence 4689999998 99999999999887 6321 01389999988 432221 00001100 00
Q ss_pred chhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHH
Q 012349 115 KYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFE 178 (465)
Q Consensus 115 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~ 178 (465)
+. ...+..+++..+++++||+||++.... .+.++++
T Consensus 66 ~~----------------------------~~~i~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~ 117 (329)
T 1b8p_A 66 PL----------------------------LAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGK 117 (329)
T ss_dssp TT----------------------------EEEEEEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cc----------------------------cCcEEEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00 013667789889999999999876311 2555666
Q ss_pred HHHHhhhccCCCCEEEEeeccc
Q 012349 179 EISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 179 ~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+..+..+ +.++|.++|-+
T Consensus 118 ~i~~~~~p---~a~ii~~SNPv 136 (329)
T 1b8p_A 118 AIDAVASR---NIKVLVVGNPA 136 (329)
T ss_dssp HHHHHSCT---TCEEEECSSSH
T ss_pred HHHHhcCC---CeEEEEccCch
Confidence 66665423 56788888744
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00021 Score=62.92 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=66.7
Q ss_pred HHHhhhhcCCCCCCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHH
Q 012349 30 DELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLR 105 (465)
Q Consensus 30 ~~~~~~~~~~~~~~mkIaIIGa----GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~ 105 (465)
+++++++. .+.+|+|||+ |.+|..++..|.+. | ++ +|..++.....
T Consensus 4 ~~l~~ll~----~p~~vaVvGas~~~g~~G~~~~~~l~~~-G-----~~--v~~vnp~~~~~------------------ 53 (140)
T 1iuk_A 4 QELRAYLS----QAKTIAVLGAHKDPSRPAHYVPRYLREQ-G-----YR--VLPVNPRFQGE------------------ 53 (140)
T ss_dssp HHHHHHHH----HCCEEEEETCCSSTTSHHHHHHHHHHHT-T-----CE--EEEECGGGTTS------------------
T ss_pred HHHHHHHc----CCCEEEEECCCCCCCChHHHHHHHHHHC-C-----CE--EEEeCCCcccC------------------
Confidence 45667771 2478999999 89999999999888 7 65 77777642110
Q ss_pred hhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhh
Q 012349 106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185 (465)
Q Consensus 106 ~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~ 185 (465)
.+. ++.+..+++++-...|+++++||+....++++++...--
T Consensus 54 -------~i~-------------------------------G~~~~~sl~el~~~vDlavi~vp~~~~~~v~~~~~~~gi 95 (140)
T 1iuk_A 54 -------ELF-------------------------------GEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLALRP 95 (140)
T ss_dssp -------EET-------------------------------TEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHHHCC
T ss_pred -------cCC-------------------------------CEEecCCHHHCCCCCCEEEEEeCHHHHHHHHHHHHHcCC
Confidence 011 233344555555578999999999999999988765321
Q ss_pred ccCCCCEEEEeeccccc
Q 012349 186 ERITVPVIISLAKGVEA 202 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~~ 202 (465)
+. + .++.|+..
T Consensus 96 ----~~-i-~~~~g~~~ 106 (140)
T 1iuk_A 96 ----GL-V-WLQSGIRH 106 (140)
T ss_dssp ----SC-E-EECTTCCC
T ss_pred ----CE-E-EEcCCcCH
Confidence 23 3 35667653
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0015 Score=66.12 Aligned_cols=130 Identities=19% Similarity=0.213 Sum_probs=70.2
Q ss_pred EeecchhHHHhHHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCC--eeEEEEecCchhhhhhhhhhhHH
Q 012349 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIWRRPGRSVDRATAEHLFE 95 (465)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~--~~V~l~~r~~~~~~~i~~~~l~~ 95 (465)
||.-|.++.+ -++.......||+|+|| |.+|.+++..|+.. ..+.++ .++.|+|.++.. +..+ ++.
T Consensus 6 ~~~~~~~~~~------~~~~~s~~~vKVaViGAaG~IG~~la~~la~~-~l~~~~~~~eL~L~Di~~~~-~~~~--Gva- 74 (345)
T 4h7p_A 6 HHHMGTLEAQ------TQGPGSMSAVKVAVTGAAGQIGYALVPLIARG-ALLGPTTPVELRLLDIEPAL-KALA--GVE- 74 (345)
T ss_dssp ----------------------CCCEEEEEESTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGH-HHHH--HHH-
T ss_pred cccccccccc------ccCCCCCCCCEEEEECcCcHHHHHHHHHHHhc-cccCCCCccEEEEECCCCcc-ccch--hhh-
Confidence 5556777765 23333334569999996 99999999999986 433221 379999987632 1111 110
Q ss_pred HHhchhhhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Ccc--
Q 012349 96 VINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST-- 171 (465)
Q Consensus 96 ~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps~-- 171 (465)
++-.+ . -.+ + ...+..++|..+++++||+||++- |-.
T Consensus 75 -~DL~~---------~-~~~----------~------------------~~~~~~~~~~~~a~~~advVvi~aG~prkpG 115 (345)
T 4h7p_A 75 -AELED---------C-AFP----------L------------------LDKVVVTADPRVAFDGVAIAIMCGAFPRKAG 115 (345)
T ss_dssp -HHHHH---------T-TCT----------T------------------EEEEEEESCHHHHTTTCSEEEECCCCCCCTT
T ss_pred -hhhhh---------c-Ccc----------C------------------CCcEEEcCChHHHhCCCCEEEECCCCCCCCC
Confidence 10000 0 001 0 014667889989999999999965 321
Q ss_pred ------------hHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 172 ------------ETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 172 ------------~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
-++++.+.|.++..+ +.+|+.++|-++
T Consensus 116 mtR~DLl~~Na~I~~~~~~~i~~~a~~---~~~vlvvsNPvd 154 (345)
T 4h7p_A 116 MERKDLLEMNARIFKEQGEAIAAVAAS---DCRVVVVGNPAN 154 (345)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCT---TCEEEECSSSHH
T ss_pred CCHHHHHHHhHHHHHHHHHHHHhhccC---ceEEEEeCCCcc
Confidence 355555666665444 567777887754
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00028 Score=70.00 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=29.8
Q ss_pred CceEEEECccHHHH-HHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGs-alA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++||+|||+|.||. +++..|.+..+ .+|.+++++++..+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~-----~~l~v~d~~~~~~~ 41 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPD-----IELVLCTRNPKVLG 41 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTT-----EEEEEECSCHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCC-----ceEEEEeCCHHHHH
Confidence 47999999999998 58888865412 66668999876544
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00086 Score=68.76 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=64.2
Q ss_pred Eeecch-hH-HHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCC----CCCCee-EEEEecCchhhhhhhhh
Q 012349 19 HHTNGS-LE-ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGY----LRDKVL-IRIWRRPGRSVDRATAE 91 (465)
Q Consensus 19 ~~~~~~-~~-~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~----~~~~~~-V~l~~r~~~~~~~i~~~ 91 (465)
||.+|+ |. |.|.. ..+.+++||+|||+|.||...+..+.+. +. +.++.+ |-+++++++.+++.
T Consensus 6 ~~~~~~~~~~~~~~~------~~Ms~klrvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~elvav~d~~~~~a~~~--- 75 (412)
T 4gqa_A 6 HHSSGVDLGTENLYF------QSMSARLNIGLIGSGFMGQAHADAYRRA-AMFYPDLPKRPHLYALADQDQAMAERH--- 75 (412)
T ss_dssp -------------------------CEEEEEEECCSHHHHHHHHHHHHH-HHHCTTSSSEEEEEEEECSSHHHHHHH---
T ss_pred ccccccccccccCcc------ccccccceEEEEcCcHHHHHHHHHHHhc-cccccccCCCeEEEEEEcCCHHHHHHH---
Confidence 677887 43 22322 2223568999999999999988888764 20 011134 44778887654431
Q ss_pred hhHHHHhchhhhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecC
Q 012349 92 HLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLP 169 (465)
Q Consensus 92 ~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVp 169 (465)
.+. ++ ...+.+|.++.+. +.|+|++|||
T Consensus 76 ------a~~-------------~~-------------------------------~~~~y~d~~~ll~~~~vD~V~I~tp 105 (412)
T 4gqa_A 76 ------AAK-------------LG-------------------------------AEKAYGDWRELVNDPQVDVVDITSP 105 (412)
T ss_dssp ------HHH-------------HT-------------------------------CSEEESSHHHHHHCTTCCEEEECSC
T ss_pred ------HHH-------------cC-------------------------------CCeEECCHHHHhcCCCCCEEEECCC
Confidence 000 00 1135678888775 5799999999
Q ss_pred cchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 170 STETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 170 s~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
.....+++..... . +.. |.+-|-+...
T Consensus 106 ~~~H~~~~~~al~---a---Gkh-Vl~EKP~a~~ 132 (412)
T 4gqa_A 106 NHLHYTMAMAAIA---A---GKH-VYCEKPLAVN 132 (412)
T ss_dssp GGGHHHHHHHHHH---T---TCE-EEEESCSCSS
T ss_pred cHHHHHHHHHHHH---c---CCC-eEeecCCcCC
Confidence 9887776665543 2 333 4477776543
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00078 Score=66.73 Aligned_cols=78 Identities=17% Similarity=0.085 Sum_probs=53.3
Q ss_pred ceEEEECccHHHHHH-HHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 44 LRIVGVGAGAWGSVF-TAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 44 mkIaIIGaGamGsal-A~~La~~~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
|||+|||+|.||..+ +..|.+. + .++ .+++++++..++. .+. +.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~-~-----~~~vav~d~~~~~~~~~---------~~~-------------~g------ 46 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT-G-----GEVVSMMSTSAERGAAY---------ATE-------------NG------ 46 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT-T-----CEEEEEECSCHHHHHHH---------HHH-------------TT------
T ss_pred CeEEEEcccHHHHHhhhHHhhcC-C-----CeEEEEECCCHHHHHHH---------HHH-------------cC------
Confidence 589999999999998 7777664 5 554 5889887644321 000 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHH
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEI 180 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l 180 (465)
...+.+|.++.+. ++|+|++|||+....+++...
T Consensus 47 -------------------------~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~a 82 (332)
T 2glx_A 47 -------------------------IGKSVTSVEELVGDPDVDAVYVSTTNELHREQTLAA 82 (332)
T ss_dssp -------------------------CSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHH
T ss_pred -------------------------CCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHH
Confidence 0013467777775 489999999998877776654
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0012 Score=65.35 Aligned_cols=36 Identities=14% Similarity=0.032 Sum_probs=29.9
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEec--Cch
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRR--PGR 83 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r--~~~ 83 (465)
|||+|+| +|.+|++++..|+.. |.. .++.++++ +++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~-~~~---~el~L~Di~~~~~ 39 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR-DIA---DEVVFVDIPDKED 39 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCC---SEEEEECCGGGHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC-CCC---CEEEEEcCCCChh
Confidence 7999999 999999999999887 621 36999998 554
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0007 Score=67.41 Aligned_cols=96 Identities=17% Similarity=0.102 Sum_probs=62.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++||+|||+|.||..++..+... +. .+.+ |.+++++++.+++. .+. +
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~-~~--~~~~l~av~d~~~~~a~~~---------a~~------------~-------- 49 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTL-PR--SEHQVVAVAARDLSRAKEF---------AQK------------H-------- 49 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTS-CT--TTEEEEEEECSSHHHHHHH---------HHH------------H--------
T ss_pred ccEEEEECchHHHHHHHHHHHhC-CC--CCeEEEEEEcCCHHHHHHH---------HHH------------c--------
Confidence 57999999999999999888654 20 0123 55788887644321 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCe-EEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPL-KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i-~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
++ .+.+|.++.+. +.|+|++|+|+....+++..... . +.. |.+-|
T Consensus 50 -------------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---~---Gkh-Vl~EK 97 (334)
T 3ohs_X 50 -------------------------DIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLA---A---GKA-VLCEK 97 (334)
T ss_dssp -------------------------TCSCEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHH---T---TCE-EEEES
T ss_pred -------------------------CCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHh---c---CCE-EEEEC
Confidence 01 24678888776 58999999999887776665443 2 333 34677
Q ss_pred cccc
Q 012349 199 GVEA 202 (465)
Q Consensus 199 Gi~~ 202 (465)
-+..
T Consensus 98 P~a~ 101 (334)
T 3ohs_X 98 PMGV 101 (334)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 6543
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00085 Score=67.74 Aligned_cols=96 Identities=16% Similarity=0.064 Sum_probs=62.7
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+++||+|||+|.||.. ++..|.+..+ .+|. +++++++.++... + .++
T Consensus 4 ~~~rigiIG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~~a---------~-------------~~~---- 52 (359)
T 3m2t_A 4 SLIKVGLVGIGAQMQENLLPSLLQMQD-----IRIVAACDSDLERARRVH---------R-------------FIS---- 52 (359)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTCTT-----EEEEEEECSSHHHHGGGG---------G-------------TSC----
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCC-----cEEEEEEcCCHHHHHHHH---------H-------------hcC----
Confidence 3579999999999984 7888865412 5654 8888876543210 0 010
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
...+.+|+++.+. +.|+|++|+|+....+++..... . +..| .+-
T Consensus 53 ---------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---a---GkhV-l~E 98 (359)
T 3m2t_A 53 ---------------------------DIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMS---K---GVNV-FVE 98 (359)
T ss_dssp ---------------------------SCCEESSHHHHHHHSCCSEEEECSCHHHHHHHHHHHHH---T---TCEE-EEC
T ss_pred ---------------------------CCcccCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---C---CCeE-EEE
Confidence 1335678888776 45999999999887777665443 3 3333 466
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
|-+..
T Consensus 99 KPla~ 103 (359)
T 3m2t_A 99 KPPCA 103 (359)
T ss_dssp SCSCS
T ss_pred CCCcC
Confidence 66544
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00091 Score=67.51 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=61.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++||+|||+|.||...+..+.+. . +.+| -+++++++..+. .+. .
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~-~----~~~l~av~d~~~~~~~~---------a~~---------------~------ 49 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAA-D----NLEVHGVFDILAEKREA---------AAQ---------------K------ 49 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-T----TEEEEEEECSSHHHHHH---------HHT---------------T------
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-C----CcEEEEEEcCCHHHHHH---------HHh---------------c------
Confidence 57999999999999999888765 2 2555 477887653321 000 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
++.+.+|.++.+. +.|+|++|+|+....+++..... . +..| .+-|-
T Consensus 50 -------------------------g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---a---GkhV-l~EKP 97 (359)
T 3e18_A 50 -------------------------GLKIYESYEAVLADEKVDAVLIATPNDSHKELAISALE---A---GKHV-VCEKP 97 (359)
T ss_dssp -------------------------TCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---T---TCEE-EEESS
T ss_pred -------------------------CCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---C---CCCE-EeeCC
Confidence 1234577888776 68999999999887777665443 2 3334 36666
Q ss_pred ccc
Q 012349 200 VEA 202 (465)
Q Consensus 200 i~~ 202 (465)
+..
T Consensus 98 ~a~ 100 (359)
T 3e18_A 98 VTM 100 (359)
T ss_dssp CCS
T ss_pred CcC
Confidence 543
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=66.75 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=63.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+++||+|||+|.||..++..|... . +.+ |.+++++++..+.. .+..+ ++
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~-~----~~~lv~v~d~~~~~~~~~--------a~~~~------------~~----- 54 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLA-P----NATISGVASRSLEKAKAF--------ATANN------------YP----- 54 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHH--------HHHTT------------CC-----
T ss_pred CceEEEEECchHHHHHHHHHHhhC-C----CcEEEEEEcCCHHHHHHH--------HHHhC------------CC-----
Confidence 468999999999999999988765 2 145 45788887543321 00000 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
....+.+|.++.+. +.|+|++|+|+....+++.... .. +..|+ +-|
T Consensus 55 -------------------------~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---Gk~V~-~EK 102 (362)
T 1ydw_A 55 -------------------------ESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAA---EK---GKHIL-LEK 102 (362)
T ss_dssp -------------------------TTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHH---TT---TCEEE-ECS
T ss_pred -------------------------CCCeeeCCHHHHhcCCCCCEEEEcCChHHHHHHHHHHH---HC---CCeEE-Eec
Confidence 01345678888775 5899999999998877766543 33 34444 466
Q ss_pred ccc
Q 012349 199 GVE 201 (465)
Q Consensus 199 Gi~ 201 (465)
-+.
T Consensus 103 P~a 105 (362)
T 1ydw_A 103 PVA 105 (362)
T ss_dssp SCS
T ss_pred CCc
Confidence 443
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00055 Score=66.27 Aligned_cols=36 Identities=28% Similarity=0.256 Sum_probs=32.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD 86 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~ 86 (465)
+|+|||+|.||.+++..|++. | . +|++++|+.++++
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~-G-----~~~I~v~nR~~~ka~ 146 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQM-G-----VKDIWVVNRTIERAK 146 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESCHHHHH
T ss_pred eEEEECcHHHHHHHHHHHHHc-C-----CCEEEEEeCCHHHHH
Confidence 899999999999999999988 7 5 8999999976544
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00061 Score=64.32 Aligned_cols=99 Identities=14% Similarity=0.239 Sum_probs=66.3
Q ss_pred hhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHH--HhcCCCCCCee-EEEEecCch-hhhhhhhhhhHHHHhc
Q 012349 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQ--DSYGYLRDKVL-IRIWRRPGR-SVDRATAEHLFEVINS 99 (465)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La--~~~G~~~~~~~-V~l~~r~~~-~~~~i~~~~l~~~i~~ 99 (465)
..++-+++++..+|.. ...+|+|+|+|+.|.+++..+. .. | .+ |-++|.+++ .+..
T Consensus 67 ~V~~L~~~i~~~Lg~~--~~~~V~IvGaG~lG~aLa~~~~~~~~-g-----~~iVg~~D~dp~~kiG~------------ 126 (212)
T 3keo_A 67 DVKKLMNFFAEILNDH--STTNVMLVGCGNIGRALLHYRFHDRN-K-----MQISMAFDLDSNDLVGK------------ 126 (212)
T ss_dssp EHHHHHHHHHHHTTTT--SCEEEEEECCSHHHHHHTTCCCCTTS-S-----EEEEEEEECTTSTTTTC------------
T ss_pred EHHHHHHHHHHHhCCC--CCCEEEEECcCHHHHHHHHhhhcccC-C-----eEEEEEEeCCchhccCc------------
Confidence 3566678888888765 4478999999999999988742 22 3 44 556777764 3210
Q ss_pred hhhhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHH
Q 012349 100 REDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVF 177 (465)
Q Consensus 100 ~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl 177 (465)
..+.++ ++...+++++.++ +.|.+|+|+|+....+++
T Consensus 127 ------------~~i~Gv-----------------------------pV~~~~dL~~~v~~~~Id~vIIAvPs~~aq~v~ 165 (212)
T 3keo_A 127 ------------TTEDGI-----------------------------PVYGISTINDHLIDSDIETAILTVPSTEAQEVA 165 (212)
T ss_dssp ------------BCTTCC-----------------------------BEEEGGGHHHHC-CCSCCEEEECSCGGGHHHHH
T ss_pred ------------eeECCe-----------------------------EEeCHHHHHHHHHHcCCCEEEEecCchhHHHHH
Confidence 011111 2333466766665 489999999999888888
Q ss_pred HHHHHh
Q 012349 178 EEISRY 183 (465)
Q Consensus 178 ~~l~~~ 183 (465)
+.+...
T Consensus 166 d~lv~~ 171 (212)
T 3keo_A 166 DILVKA 171 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887653
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00055 Score=68.32 Aligned_cols=93 Identities=20% Similarity=0.243 Sum_probs=60.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+.++|+|||+|.+|...+..|....+ ..+|.+|+|+ +.++ +.+.+... + ++
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~----~~~V~v~~r~--~a~~-----la~~l~~~-------------~-g~---- 170 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFA----LEAILVHDPY--ASPE-----ILERIGRR-------------C-GV---- 170 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECTT--CCHH-----HHHHHHHH-------------H-TS----
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCC----CcEEEEECCc--HHHH-----HHHHHHHh-------------c-CC----
Confidence 45799999999999999999986412 1689999999 3332 22112110 0 00
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEe
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISL 196 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~ 196 (465)
.+.+. ++++++.++|+||.|||+.. .++. ..++++ +++|+.+
T Consensus 171 -------------------------~~~~~-~~~eav~~aDIVi~aT~s~~--pvl~--~~~l~~---G~~V~~v 212 (313)
T 3hdj_A 171 -------------------------PARMA-APADIAAQADIVVTATRSTT--PLFA--GQALRA---GAFVGAI 212 (313)
T ss_dssp -------------------------CEEEC-CHHHHHHHCSEEEECCCCSS--CSSC--GGGCCT---TCEEEEC
T ss_pred -------------------------eEEEe-CHHHHHhhCCEEEEccCCCC--cccC--HHHcCC---CcEEEEC
Confidence 24455 89999999999999999852 2222 234555 5655444
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0011 Score=65.54 Aligned_cols=66 Identities=18% Similarity=0.110 Sum_probs=48.8
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~ 86 (465)
.+|-+..+|-...--+.-|+.. +......++|+|||+|.+|.+++..|++. | . +|++|+|+.++++
T Consensus 113 ~~g~l~g~nTd~~G~~~~l~~~-~~~~l~~~~vlVlGaGg~g~aia~~L~~~-G-----~~~V~v~nR~~~ka~ 179 (297)
T 2egg_A 113 NDGRLVGYNTDGLGYVQALEEE-MNITLDGKRILVIGAGGGARGIYFSLLST-A-----AERIDMANRTVEKAE 179 (297)
T ss_dssp ETTEEEEECCHHHHHHHHHHHH-TTCCCTTCEEEEECCSHHHHHHHHHHHTT-T-----CSEEEEECSSHHHHH
T ss_pred cCCeEeeccCCHHHHHHHHHHh-CCCCCCCCEEEEECcHHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHHH
Confidence 5676777777666555555543 20122347899999999999999999988 7 5 8999999986554
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0016 Score=64.99 Aligned_cols=96 Identities=16% Similarity=0.128 Sum_probs=61.6
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
.|+||+|||+|.||.. ++..+... . +.+|. +++++++.+++. .+. |
T Consensus 22 ~mirigiIG~G~ig~~~~~~~~~~~-~----~~~lvav~d~~~~~a~~~---------a~~------------~------ 69 (350)
T 4had_A 22 SMLRFGIISTAKIGRDNVVPAIQDA-E----NCVVTAIASRDLTRAREM---------ADR------------F------ 69 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHC-S----SEEEEEEECSSHHHHHHH---------HHH------------H------
T ss_pred CccEEEEEcChHHHHHHHHHHHHhC-C----CeEEEEEECCCHHHHHHH---------HHH------------c------
Confidence 5689999999999975 45566554 2 14544 788887654431 100 0
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
+ -..+.+|.++.+. +.|+|++|||+....+++..... . +.. |.+-
T Consensus 70 --g------------------------~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~---a---Gkh-Vl~E 116 (350)
T 4had_A 70 --S------------------------VPHAFGSYEEMLASDVIDAVYIPLPTSQHIEWSIKAAD---A---GKH-VVCE 116 (350)
T ss_dssp --T------------------------CSEEESSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHH---T---TCE-EEEC
T ss_pred --C------------------------CCeeeCCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHh---c---CCE-EEEe
Confidence 0 0135678888774 47999999999887777666543 2 233 3477
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
|-+..
T Consensus 117 KPla~ 121 (350)
T 4had_A 117 KPLAL 121 (350)
T ss_dssp SCCCS
T ss_pred CCccc
Confidence 77654
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00064 Score=64.12 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=64.3
Q ss_pred hHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhh
Q 012349 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDV 103 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~ 103 (465)
+++-++++++.++.. +.+||+|||+|.+|.+++..+....| .+ |-++|.+++....
T Consensus 64 v~~L~~~~~~~lg~~--~~~rV~IIGaG~~G~~la~~~~~~~g-----~~iVg~~D~dp~k~g~---------------- 120 (211)
T 2dt5_A 64 VPVLKRELRHILGLN--RKWGLCIVGMGRLGSALADYPGFGES-----FELRGFFDVDPEKVGR---------------- 120 (211)
T ss_dssp HHHHHHHHHHHHTTT--SCEEEEEECCSHHHHHHHHCSCCCSS-----EEEEEEEESCTTTTTC----------------
T ss_pred hHHHHHHHHHHhCcC--CCCEEEEECccHHHHHHHHhHhhcCC-----cEEEEEEeCCHHHHhh----------------
Confidence 455567777777764 34799999999999999885322102 44 5577777653221
Q ss_pred HHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc-CCCEEEEecCcchHHHHHHHHHH
Q 012349 104 LRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW-DADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 104 ~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~-~aDiVIlaVps~~l~~vl~~l~~ 182 (465)
...++ ++...+++++.++ +.|.|++|+|+....++.+.+..
T Consensus 121 ---------~i~gv-----------------------------~V~~~~dl~ell~~~ID~ViIA~Ps~~~~ei~~~l~~ 162 (211)
T 2dt5_A 121 ---------PVRGG-----------------------------VIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVA 162 (211)
T ss_dssp ---------EETTE-----------------------------EEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred ---------hhcCC-----------------------------eeecHHhHHHHHHcCCCEEEEeCCchhHHHHHHHHHH
Confidence 11111 2334567777665 58999999999988887777754
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0021 Score=66.79 Aligned_cols=206 Identities=19% Similarity=0.176 Sum_probs=116.7
Q ss_pred hhHHHhHHHhh--hhcCCCC-------CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhH
Q 012349 24 SLEERLDELRR--LMGKAEG-------DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLF 94 (465)
Q Consensus 24 ~~~~~~~~~~~--~~~~~~~-------~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~ 94 (465)
++.+.|++|.+ .|.+.+- +-+||+|||.|+-|.+-|.-|-++ | .+|++--|.....+.
T Consensus 9 ~~~~~~~~~~~c~~m~~~eF~~~~~~lkgK~IaVIGyGsQG~AqAlNLRDS-G-----v~V~Vglr~~s~~e~------- 75 (491)
T 3ulk_A 9 NLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVGCGAQGLNQGLNMRDS-G-----LDISYALRKEAIAEK------- 75 (491)
T ss_dssp CHHHHHHHHTCCEECCGGGGTTTTGGGTTSEEEEESCSHHHHHHHHHHHHT-T-----CEEEEEECHHHHHTT-------
T ss_pred cHHHHHHHhccceeccHHHhcchhHHHcCCEEEEeCCChHhHHHHhHHHhc-C-----CcEEEEeCCCCcccc-------
Confidence 46677877743 2322211 127999999999999999999999 8 788776664321110
Q ss_pred HHHhchhhhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHH
Q 012349 95 EVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETK 174 (465)
Q Consensus 95 ~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~ 174 (465)
. ..+-... .+ +..+ .+..+|++.||+|++.+|.....
T Consensus 76 ------~---------~S~~~A~---------------~~------------Gf~v-~~~~eA~~~ADvV~~L~PD~~q~ 112 (491)
T 3ulk_A 76 ------R---------ASWRKAT---------------EN------------GFKV-GTYEELIPQADLVINLTPDKQHS 112 (491)
T ss_dssp ------C---------HHHHHHH---------------HT------------TCEE-EEHHHHGGGCSEEEECSCGGGHH
T ss_pred ------c---------chHHHHH---------------HC------------CCEe-cCHHHHHHhCCEEEEeCChhhHH
Confidence 0 0000000 11 2333 34678999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccE--EEEeCCchhh--h--hhccCceEE
Q 012349 175 EVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENI--LYLGGPNIAS--E--IYNKEYANA 248 (465)
Q Consensus 175 ~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i--~vlsGP~~a~--e--v~~g~~t~~ 248 (465)
++.++|.|++++ +.. +..+-|+.... ....+.....+ +.=-||++.. + -+.|.|+.+
T Consensus 113 ~vy~~I~p~lk~---G~~-L~faHGFnI~~-------------~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~li 175 (491)
T 3ulk_A 113 DVVRTVQPLMKD---GAA-LGYSHGFNIVE-------------VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLI 175 (491)
T ss_dssp HHHHHHGGGSCT---TCE-EEESSCHHHHT-------------TCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHhhCCC---CCE-EEecCcccccc-------------cccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceEE
Confidence 999999999997 453 45777875320 11111111222 2225666643 2 234557766
Q ss_pred EEe--CCh-----hHHHHHHHHHcC--C-----CCeEEecCChHHHH--HHHHHHHHHHHHHHhhhcccC
Q 012349 249 RIC--GAE-----KWRKPLAKFLRR--P-----HFTVWDNGDLVTHE--VMGGLKNVYAIGAGMVAALTN 302 (465)
Q Consensus 249 ~~~--~~~-----~~~~~l~~ll~~--~-----g~~v~~s~Di~gve--~~galKNviAia~Gi~~gl~~ 302 (465)
.+- .|. +.+..++...-. . .|+-.+.+|+.|-+ |||.+.-.+-.+.-.+-..+|
T Consensus 176 AVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~eEtetDLfGEQaVLcGgl~~li~agFetLveaGy 245 (491)
T 3ulk_A 176 AVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGT 245 (491)
T ss_dssp EECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 552 221 233334444332 1 23444567888854 577655544333333444444
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0024 Score=63.69 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=29.6
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||+||| +|.+|.+++..|+.+.+ + ..++.++++++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~-~--~~el~L~Di~~ 37 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLP-S--GSELSLYDIAP 37 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSC-T--TEEEEEECSST
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-C--CceEEEEecCC
Confidence 7999999 89999999999987511 1 16899999986
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0028 Score=62.33 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=66.2
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+.+||+|+|+ |.||...+..+.+. | .+ .++..++..... ..
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~-g-----~~-~V~~V~p~~~g~-------------------------~~------ 47 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAY-G-----TK-MVGGVTPGKGGT-------------------------TH------ 47 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTTC-------------------------EE------
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC-C-----Ce-EEEEeCCCcccc-------------------------ee------
Confidence 4579999998 99999999999887 6 55 345555421100 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
.++.+..+++++.+ ++|+++++||+....+++++.... . -..+|.++.
T Consensus 48 -------------------------~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~~ea~~~-G----i~~iVi~t~ 97 (288)
T 2nu8_A 48 -------------------------LGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDA-G----IKLIITITE 97 (288)
T ss_dssp -------------------------TTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHHHHHT-T----CSEEEECCC
T ss_pred -------------------------CCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEECC
Confidence 03445677888777 899999999999999998887653 1 234566788
Q ss_pred ccccc
Q 012349 199 GVEAE 203 (465)
Q Consensus 199 Gi~~~ 203 (465)
|+..+
T Consensus 98 G~~~~ 102 (288)
T 2nu8_A 98 GIPTL 102 (288)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 88654
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0029 Score=62.16 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=47.0
Q ss_pred CCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhhh
Q 012349 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVDR 87 (465)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~~ 87 (465)
+|-++-.|-.-.--+.-|++... ....+++.|+|+|.+|.+++..|++. | . +|++++|+.+++++
T Consensus 101 ~g~l~G~NTD~~G~~~~l~~~~~--~l~~k~vlVlGaGG~g~aia~~L~~~-G-----~~~v~i~~R~~~~a~~ 166 (283)
T 3jyo_A 101 TGHTTGHNTDVSGFGRGMEEGLP--NAKLDSVVQVGAGGVGNAVAYALVTH-G-----VQKLQVADLDTSRAQA 166 (283)
T ss_dssp TSCEEEECHHHHHHHHHHHHHCT--TCCCSEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEECSSHHHHHH
T ss_pred CCeEEEecCCHHHHHHHHHHhCc--CcCCCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEECCHHHHHH
Confidence 56666667555444444544321 22447899999999999999999988 7 5 79999999876553
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0014 Score=65.44 Aligned_cols=42 Identities=7% Similarity=0.107 Sum_probs=34.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+.++|+|||+|.+|..++..|....+ ..+|.+|+|+++++++
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~----~~~V~v~~r~~~~a~~ 165 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFD----IGEVKAYDVREKAAKK 165 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECSSHHHHHH
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCC----ccEEEEECCCHHHHHH
Confidence 45799999999999999999987412 1689999999876553
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0021 Score=64.82 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=60.7
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+++||+|||+|.||.. .+..+....+ .+| -+++++++.+.+ .++
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~-------------------------~~~---- 49 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNPH-----FELYKIVERSKELSKE-------------------------RYP---- 49 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCTT-----EEEEEEECSSCCGGGT-------------------------TCT----
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCC-----eEEEEEEcCCHHHHHH-------------------------hCC----
Confidence 4579999999999997 5666655412 554 477887653210 011
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
...+.+|.++.+.+ .|+|++|+|+....+++..... . +..| .+-
T Consensus 50 ---------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---a---GkhV-l~E 95 (362)
T 3fhl_A 50 ---------------------------QASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAGMALE---A---GKNV-VVE 95 (362)
T ss_dssp ---------------------------TSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHHHHHH---T---TCEE-EEE
T ss_pred ---------------------------CCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---C---CCeE-EEe
Confidence 23456788888766 8999999999877776665443 2 3333 466
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
|-+..
T Consensus 96 KP~a~ 100 (362)
T 3fhl_A 96 KPFTS 100 (362)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 66544
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0015 Score=66.54 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=55.5
Q ss_pred CceEEEECcc-HHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaG-amGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
++||+|||+| .||..++..+.+. . +.+ |-+++++++.+++. .+. |
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~-~----~~~l~av~d~~~~~~~~~---------a~~------------~------- 48 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHH-P----DAQIVAACDPNEDVRERF---------GKE------------Y------- 48 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHC-T----TEEEEEEECSCHHHHHHH---------HHH------------H-------
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhC-C----CeEEEEEEeCCHHHHHHH---------HHH------------c-------
Confidence 5899999999 9999999988765 2 144 44788887644321 000 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHH
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~ 181 (465)
++.+.+|.++.+. +.|+|++++|+....+++....
T Consensus 49 --------------------------g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al 85 (387)
T 3moi_A 49 --------------------------GIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVVQAS 85 (387)
T ss_dssp --------------------------TCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHHHHH
T ss_pred --------------------------CCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHH
Confidence 1234678888775 4899999999987777666544
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0016 Score=63.76 Aligned_cols=150 Identities=19% Similarity=0.130 Sum_probs=85.8
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
++|||+|+|+ |.||..++..+....| +++. +++++++.... . ....+-++
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~-----~elva~~d~~~~~~~g-----------~----------d~~~~~g~-- 55 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEG-----VQLGAALEREGSSLLG-----------S----------DAGELAGA-- 55 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTT-----EECCCEECCTTCTTCS-----------C----------CTTCSSSS--
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCC-----CEEEEEEecCchhhhh-----------h----------hHHHHcCC--
Confidence 3589999998 9999999998875523 6766 66766532100 0 00000010
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+. ..+.+++|+++++.++|+||-++++....+.+.... .. +..+|+-+-|
T Consensus 56 --~~----------------------~~v~~~~dl~~~l~~~DvVIDft~p~~~~~~~~~a~---~~---G~~vVigTtG 105 (273)
T 1dih_A 56 --GK----------------------TGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCR---QH---GKGMVIGTTG 105 (273)
T ss_dssp --SC----------------------CSCCEESCSTTTTTSCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECCCC
T ss_pred --Cc----------------------CCceecCCHHHHhcCCCEEEEcCChHHHHHHHHHHH---hC---CCCEEEECCC
Confidence 00 134457788887888999996776665555555443 33 4456665558
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEe
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
+..+. .+.+.+.-. ...++..||+...+.. -.+.++...+.|. .++.+.+
T Consensus 106 ~~~e~---------~~~L~~~a~----~~~vv~a~N~siGvn~----------~~~l~~~aa~~~~-~~~diei 155 (273)
T 1dih_A 106 FDEAG---------KQAIRDAAA----DIAIVFAANFSVGVNV----------MLKLLEKAAKVMG-DYTDIEI 155 (273)
T ss_dssp CCHHH---------HHHHHHHTT----TSCEEECSCCCHHHHH----------HHHHHHHHHHHHT-TTSEEEE
T ss_pred CCHHH---------HHHHHHhcC----CCCEEEEecCcHHHHH----------HHHHHHHHHHhcC-CCCCEEE
Confidence 76541 133444322 1246778888764331 0234566777775 3555554
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0015 Score=65.39 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=32.7
Q ss_pred eEEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 148 LKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 148 i~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+.+.+|+++.+.+ .|+|++|+|+....+++.... .. +..| .+-|-+..
T Consensus 51 ~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al---~a---Gk~V-l~EKP~a~ 100 (345)
T 3f4l_A 51 IHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRAL---EA---GKNV-LVEKPFTP 100 (345)
T ss_dssp CEEESCTHHHHTCTTEEEEEECSCGGGHHHHHHHHH---HT---TCEE-EECSSSCS
T ss_pred CceECCHHHHhcCCCCCEEEEcCChHHHHHHHHHHH---Hc---CCcE-EEeCCCCC
Confidence 4567888888765 899999999987777666543 33 3334 46675543
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0027 Score=64.16 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=60.1
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+++||+|||+|.||.. .+..+.+..+ .+| -+++++++.+.+ ..+
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~-----~~l~av~d~~~~~~~~-------------------------~~~---- 51 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPG-----LNLAFVASRDEEKVKR-------------------------DLP---- 51 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTT-----EEEEEEECSCHHHHHH-------------------------HCT----
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCC-----eEEEEEEcCCHHHHHh-------------------------hCC----
Confidence 4589999999999986 5666654312 555 477887643210 011
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
...+.+|.++.+. +.|+|++|+|+....+++.... .. +..| .+-
T Consensus 52 ---------------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~~al---~a---Gk~V-l~E 97 (364)
T 3e82_A 52 ---------------------------DVTVIASPEAAVQHPDVDLVVIASPNATHAPLARLAL---NA---GKHV-VVD 97 (364)
T ss_dssp ---------------------------TSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHHHHH---HT---TCEE-EEC
T ss_pred ---------------------------CCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHH---HC---CCcE-EEe
Confidence 2346688888877 6899999999987777665543 33 3344 467
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
|-+..
T Consensus 98 KPla~ 102 (364)
T 3e82_A 98 KPFTL 102 (364)
T ss_dssp SCSCS
T ss_pred CCCcC
Confidence 75543
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0024 Score=66.16 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.1
Q ss_pred CeEEecCHHHHhcCCCEEEEec
Q 012349 147 PLKVVTNLQEAVWDADIVINGL 168 (465)
Q Consensus 147 ~i~~t~dl~eal~~aDiVIlaV 168 (465)
.+..++|..+++++||+||++.
T Consensus 60 ~v~~t~d~~~al~~AD~Viita 81 (417)
T 1up7_A 60 KVLISDTFEGAVVDAKYVIFQF 81 (417)
T ss_dssp EEEECSSHHHHHTTCSEEEECC
T ss_pred EEEEeCCHHHHhCCCCEEEEcC
Confidence 4667789888899999999998
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.002 Score=62.01 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|+|||+|.+|+.++..|++. |. .++++++++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~-Gv----~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASA-GV----GNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHc-CC----CeEEEEcCCC
Confidence 6899999999999999999999 82 4899999986
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0029 Score=63.39 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=60.4
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+++||+|||+|.||.. .+..+.+. . +.+| -+++++++.+++ ..+
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~-~----~~~l~av~d~~~~~~~~-------------------------~~~---- 51 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGT-P----GLELAGVSSSDASKVHA-------------------------DWP---- 51 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTS-T----TEEEEEEECSCHHHHHT-------------------------TCS----
T ss_pred CCceEEEECCCHHHHHHHHHHHhhC-C----CcEEEEEECCCHHHHHh-------------------------hCC----
Confidence 4589999999999996 66666654 2 2554 477887653210 011
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
...+.+|+++.+.+ .|+|++|+|+....+++..... . +..| .+-
T Consensus 52 ---------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---a---GkhV-~~E 97 (352)
T 3kux_A 52 ---------------------------AIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQSALA---A---GKHV-VVD 97 (352)
T ss_dssp ---------------------------SCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHHHHHH---T---TCEE-EEC
T ss_pred ---------------------------CCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---C---CCcE-EEE
Confidence 23456888888765 8999999999877776665433 3 3334 356
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
|-+..
T Consensus 98 KPla~ 102 (352)
T 3kux_A 98 KPFTV 102 (352)
T ss_dssp SSCCS
T ss_pred CCCcC
Confidence 66543
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0016 Score=65.09 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=57.8
Q ss_pred CceEEEECccHHHH-HHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGs-alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
++||+|||+|.||. ..+..+....+ .+ |-+++++++. .
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~-----~~lvav~d~~~~~------------------------------~----- 64 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNAN-----FKLVATASRHGTV------------------------------E----- 64 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTT-----EEEEEEECSSCCC------------------------------T-----
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCC-----eEEEEEEeCChhh------------------------------c-----
Confidence 57999999999998 67888876512 45 3456665421 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc---CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW---DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~---~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
++.+.+|.++.+. +.|+|++|+|+....+++..... . +..| .+-
T Consensus 65 --------------------------g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~al~---a---GkhV-l~E 111 (330)
T 4ew6_A 65 --------------------------GVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAYKALV---A---GKHV-FLE 111 (330)
T ss_dssp --------------------------TSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH---T---TCEE-EEC
T ss_pred --------------------------CCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHH---c---CCcE-EEe
Confidence 2334577777765 48999999998877776665543 2 3344 377
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
|-+..
T Consensus 112 KP~a~ 116 (330)
T 4ew6_A 112 KPPGA 116 (330)
T ss_dssp SSSCS
T ss_pred CCCCC
Confidence 76543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00097 Score=65.43 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=45.6
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~ 86 (465)
.+|-++-.|-.-.-=+.-|++.-. ....++|.|+|+|.+|.+++..|++. | . +|++++|+.++.+
T Consensus 90 ~~g~l~G~NTD~~G~~~~L~~~~~--~l~~k~vlvlGaGg~g~aia~~L~~~-G-----~~~v~v~~R~~~~a~ 155 (277)
T 3don_A 90 KDGKWIGYNTDGIGYVNGLKQIYE--GIEDAYILILGAGGASKGIANELYKI-V-----RPTLTVANRTMSRFN 155 (277)
T ss_dssp ETTEEEEECCHHHHHHHHHHHHST--TGGGCCEEEECCSHHHHHHHHHHHTT-C-----CSCCEEECSCGGGGT
T ss_pred cCCEEEEECChHHHHHHHHHHhCC--CcCCCEEEEECCcHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHHH
Confidence 366666666554444444444221 12346899999999999999999988 7 5 8999999986543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00088 Score=70.28 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=35.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+.|||.|+|+|.+|..+|..|... | |+|++++++++.+++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~-~-----~~v~vId~d~~~~~~ 41 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGE-N-----NDITIVDKDGDRLRE 41 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCST-T-----EEEEEEESCHHHHHH
T ss_pred CcCEEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 459999999999999999999887 6 999999999886654
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0023 Score=63.30 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=27.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~-l~~r~~~~ 84 (465)
+++||+|||+|.||..++..+.+..+ .++. +++++++.
T Consensus 8 ~~irv~IIG~G~iG~~~~~~l~~~~~-----~elvav~d~~~~~ 46 (304)
T 3bio_A 8 KKIRAAIVGYGNIGRYALQALREAPD-----FEIAGIVRRNPAE 46 (304)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTT-----EEEEEEECC----
T ss_pred CCCEEEEECChHHHHHHHHHHhcCCC-----CEEEEEEcCCHHH
Confidence 35899999999999999999887512 6665 78887653
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.004 Score=62.19 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=63.6
Q ss_pred CCCCCceEEEECcc-HHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccch
Q 012349 39 AEGDPLRIVGVGAG-AWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (465)
Q Consensus 39 ~~~~~mkIaIIGaG-amGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~ 116 (465)
...+++||+|||+| .||...+..+.+. + ++.+ |.+++++++.+++. .+. +.
T Consensus 14 ~~~~~irvgiIG~G~~~g~~~~~~l~~~-~---~~~~lvav~d~~~~~~~~~---------a~~-------------~~- 66 (340)
T 1zh8_A 14 KPLRKIRLGIVGCGIAARELHLPALKNL-S---HLFEITAVTSRTRSHAEEF---------AKM-------------VG- 66 (340)
T ss_dssp --CCCEEEEEECCSHHHHHTHHHHHHTT-T---TTEEEEEEECSSHHHHHHH---------HHH-------------HS-
T ss_pred CCCCceeEEEEecCHHHHHHHHHHHHhC-C---CceEEEEEEcCCHHHHHHH---------HHH-------------hC-
Confidence 34456899999999 8999988888754 1 1144 46888887654321 000 00
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEE
Q 012349 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVII 194 (465)
Q Consensus 117 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivI 194 (465)
...+.+|.++.+. +.|+|++|+|+....+++..... . +..|
T Consensus 67 ------------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---a---GkhV- 109 (340)
T 1zh8_A 67 ------------------------------NPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEKALR---K---GVHV- 109 (340)
T ss_dssp ------------------------------SCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHHH---T---TCEE-
T ss_pred ------------------------------CCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHH---C---CCcE-
Confidence 1145678888775 58999999999877776665433 3 3333
Q ss_pred Eeeccccc
Q 012349 195 SLAKGVEA 202 (465)
Q Consensus 195 s~~kGi~~ 202 (465)
.+-|-+..
T Consensus 110 l~EKPla~ 117 (340)
T 1zh8_A 110 ICEKPIST 117 (340)
T ss_dssp EEESSSSS
T ss_pred EEeCCCCC
Confidence 45676543
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0026 Score=64.06 Aligned_cols=93 Identities=24% Similarity=0.247 Sum_probs=59.8
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+++||+|||+|.||.. .+..+.+. . +.+| -+++++++.+.+ ..+
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~-~----~~~l~av~d~~~~~~~~-------------------------~~~---- 49 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVL-D----EYQISKIMTSRTEEVKR-------------------------DFP---- 49 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTC-T----TEEEEEEECSCHHHHHH-------------------------HCT----
T ss_pred CcceEEEEccCHHHHHHHHHHHhhC-C----CeEEEEEEcCCHHHHHh-------------------------hCC----
Confidence 4589999999999986 56666543 1 2554 477777642110 011
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
...+.+|+++.+. +.|+|++|+|+....+++..... . +..|+ +-
T Consensus 50 ---------------------------~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~---a---GkhVl-~E 95 (358)
T 3gdo_A 50 ---------------------------DAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMACIQ---A---GKHVV-ME 95 (358)
T ss_dssp ---------------------------TSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHHHHHH---T---TCEEE-EE
T ss_pred ---------------------------CCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHH---c---CCeEE-Ee
Confidence 2345678888876 68999999999877776665443 3 33443 57
Q ss_pred ccccc
Q 012349 198 KGVEA 202 (465)
Q Consensus 198 kGi~~ 202 (465)
|-+..
T Consensus 96 KPla~ 100 (358)
T 3gdo_A 96 KPMTA 100 (358)
T ss_dssp SSCCS
T ss_pred cCCcC
Confidence 76544
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.002 Score=66.86 Aligned_cols=86 Identities=10% Similarity=0.001 Sum_probs=55.6
Q ss_pred CCceEEEECccHHHH-HHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGs-alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+++||+|||+|.||. .++..|.+. + +.+ |.+++++++..+.+ .+..+ .+.
T Consensus 82 ~~irigiIG~G~~g~~~~~~~l~~~-~----~~~lvav~d~~~~~~~~~--------a~~~g------------~~~--- 133 (433)
T 1h6d_A 82 RRFGYAIVGLGKYALNQILPGFAGC-Q----HSRIEALVSGNAEKAKIV--------AAEYG------------VDP--- 133 (433)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTC-S----SEEEEEEECSCHHHHHHH--------HHHTT------------CCG---
T ss_pred CceEEEEECCcHHHHHHHHHHHhhC-C----CcEEEEEEcCCHHHHHHH--------HHHhC------------CCc---
Confidence 457999999999997 888888654 2 245 45888887644321 01000 000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHH
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~ 181 (465)
..+.+.+|.++.+. +.|+|++|+|+....+++....
T Consensus 134 --------------------------~~~~~~~~~~~ll~~~~vD~V~iatp~~~h~~~~~~al 171 (433)
T 1h6d_A 134 --------------------------RKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAF 171 (433)
T ss_dssp --------------------------GGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred --------------------------ccccccCCHHHHhcCCCCCEEEEcCCchhHHHHHHHHH
Confidence 01234566777665 6899999999988877776543
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0021 Score=64.05 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=28.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~ 83 (465)
++||+|||+|+||..++..+.+. + +.+ |.+++++++
T Consensus 3 ~irV~IiG~G~mG~~~~~~l~~~-~----~~elvav~d~~~~ 39 (320)
T 1f06_A 3 NIRVAIVGYGNLGRSVEKLIAKQ-P----DMDLVGIFSRRAT 39 (320)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTC-S----SEEEEEEEESSSC
T ss_pred CCEEEEEeecHHHHHHHHHHhcC-C----CCEEEEEEcCCHH
Confidence 57999999999999999988765 3 144 557887753
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.004 Score=61.86 Aligned_cols=81 Identities=10% Similarity=0.150 Sum_probs=54.3
Q ss_pred CCceEEEECccHHHH-HHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGs-alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+++||+|||+|.+|. .++..+... + .+ |.+++++++.++.+ .+. ++
T Consensus 3 ~~~rvgiiG~G~~~~~~~~~~l~~~-~-----~~lvav~d~~~~~~~~~---------a~~-------------~~---- 50 (336)
T 2p2s_A 3 KKIRFAAIGLAHNHIYDMCQQLIDA-G-----AELAGVFESDSDNRAKF---------TSL-------------FP---- 50 (336)
T ss_dssp -CCEEEEECCSSTHHHHHHHHHHHT-T-----CEEEEEECSCTTSCHHH---------HHH-------------ST----
T ss_pred CccEEEEECCChHHHHHhhhhhcCC-C-----cEEEEEeCCCHHHHHHH---------HHh-------------cC----
Confidence 357999999999996 566666544 4 56 56899988755431 100 11
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHH
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~ 181 (465)
...+.+|.++.+. +.|+|++|+|+....+++....
T Consensus 51 ---------------------------~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al 87 (336)
T 2p2s_A 51 ---------------------------SVPFAASAEQLITDASIDLIACAVIPCDRAELALRTL 87 (336)
T ss_dssp ---------------------------TCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred ---------------------------CCcccCCHHHHhhCCCCCEEEEeCChhhHHHHHHHHH
Confidence 1224567878775 5899999999987776665543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0068 Score=61.91 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=31.3
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++||+|+| +|.+|.+++..|+.. +.+....++.|++.+.+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~-~l~~e~~~l~L~d~d~~ 72 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGSE 72 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCG
T ss_pred CCCEEEEECCCChHHHHHHHHHHcC-CcCCCCceeEEEecCcc
Confidence 458999999 799999999999987 65532234777766544
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0024 Score=66.10 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=35.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.|+|.|+|+|.+|..++..|.+. | ++|++++++++.++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~-g-----~~vvvId~d~~~v~~ 42 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSS-G-----VKMVVLDHDPDHIET 42 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECCHHHHHH
Confidence 47899999999999999999988 7 899999999987664
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0037 Score=61.04 Aligned_cols=65 Identities=15% Similarity=0.321 Sum_probs=49.1
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|-++.+|-...--..-|++ .+.. ..++|.|||+|.+|.+++..|++. |. .+|++|+|+.++++
T Consensus 93 ~~g~l~g~NTD~~G~~~~l~~-~~~~--~~~~vlvlGaGgaarav~~~L~~~-G~----~~i~v~nRt~~ka~ 157 (271)
T 1npy_A 93 DNGFLRAYNTDYIAIVKLIEK-YHLN--KNAKVIVHGSGGMAKAVVAAFKNS-GF----EKLKIYARNVKTGQ 157 (271)
T ss_dssp ETTEEEEECHHHHHHHHHHHH-TTCC--TTSCEEEECSSTTHHHHHHHHHHT-TC----CCEEEECSCHHHHH
T ss_pred cCCEEEeecCCHHHHHHHHHH-hCCC--CCCEEEEECCcHHHHHHHHHHHHC-CC----CEEEEEeCCHHHHH
Confidence 477777888776666666655 2332 236899999999999999999988 71 37999999976544
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0016 Score=68.49 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=33.0
Q ss_pred EeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
||..|.++..+ .++||+|+|+|.+|.+++..|++. + +.+|++++|+.+.++
T Consensus 11 ~~~~~~~~~~l------------~~k~VlIiGAGgiG~aia~~L~~~-~----g~~V~v~~R~~~ka~ 61 (467)
T 2axq_A 11 HHSSGHIEGRH------------MGKNVLLLGSGFVAQPVIDTLAAN-D----DINVTVACRTLANAQ 61 (467)
T ss_dssp ------------------------CEEEEEECCSTTHHHHHHHHHTS-T----TEEEEEEESSHHHHH
T ss_pred cccCCccccCC------------CCCEEEEECChHHHHHHHHHHHhC-C----CCeEEEEECCHHHHH
Confidence 55666665443 236899999999999999999976 3 278999999976544
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0057 Score=59.36 Aligned_cols=65 Identities=17% Similarity=0.081 Sum_probs=46.7
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|-++-.|-.-.--+.-|++. +. ....++|.|+|+|.+|.+++..|++. | .+|++|+|+.++++
T Consensus 92 ~~g~l~g~NTD~~G~~~~L~~~-~~-~~~~~~vlvlGaGg~g~a~a~~L~~~-G-----~~v~v~~R~~~~a~ 156 (272)
T 1p77_A 92 DDGKLYADNTDGIGLVTDLQRL-NW-LRPNQHVLILGAGGATKGVLLPLLQA-Q-----QNIVLANRTFSKTK 156 (272)
T ss_dssp TTSCEEEECCHHHHHHHHHHHT-TC-CCTTCEEEEECCSHHHHTTHHHHHHT-T-----CEEEEEESSHHHHH
T ss_pred cCCEEEEecCCHHHHHHHHHHh-CC-CcCCCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 4565555555544444445542 22 22347899999999999999999998 7 89999999986554
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0024 Score=60.03 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=31.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.++|.|+|+|.+|..++..|.+. | + |++++++++.++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~-g-----~-v~vid~~~~~~~ 45 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGS-E-----V-FVLAEDENVRKK 45 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTS-E-----E-EEEESCGGGHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhC-C-----e-EEEEECCHHHHH
Confidence 46899999999999999999877 6 8 999999887554
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0074 Score=59.16 Aligned_cols=67 Identities=19% Similarity=0.089 Sum_probs=47.2
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+|-++-.|-.-.-=+.-|++. +. +...+++.|+|+|.+|.+++..|++. |. .+|++|+|+.+++++
T Consensus 99 ~~g~l~G~NTD~~G~~~~L~~~-~~-~l~~k~vlvlGaGg~g~aia~~L~~~-G~----~~v~v~~R~~~~a~~ 165 (281)
T 3o8q_A 99 DDGEILGDNTDGEGLVQDLLAQ-QV-LLKGATILLIGAGGAARGVLKPLLDQ-QP----ASITVTNRTFAKAEQ 165 (281)
T ss_dssp TTSCEEEECCHHHHHHHHHHHT-TC-CCTTCEEEEECCSHHHHHHHHHHHTT-CC----SEEEEEESSHHHHHH
T ss_pred CCCcEEEEecHHHHHHHHHHHh-CC-CccCCEEEEECchHHHHHHHHHHHhc-CC----CeEEEEECCHHHHHH
Confidence 4676666666554444445442 21 22447899999999999999999988 71 389999999875543
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.01 Score=61.62 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=56.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+++||+|||+|.||...+..+....+ .+ |.+++++++.+++. .+.+.+.+ ++
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~~~~~-----~~lvav~d~~~~~~~~~-----a~~~~~~g------------~~----- 71 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMARRDD-----VEIVAFADPDPYMVGRA-----QEILKKNG------------KK----- 71 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTT-----EEEEEEECSCHHHHHHH-----HHHHHHTT------------CC-----
T ss_pred CCceEEEEecCHHHHHHHHHHHhCCC-----cEEEEEEeCCHHHHHHH-----HHHHHhcC------------CC-----
Confidence 35799999999999998888875412 55 45888887654431 11010000 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEec----CHHHHhc--CCCEEEEecCcchHHHHHHHHH
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVT----NLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~----dl~eal~--~aDiVIlaVps~~l~~vl~~l~ 181 (465)
...+.+ |.++.+. +.|+|++|+|.....+++....
T Consensus 72 --------------------------~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~al 112 (444)
T 2ixa_A 72 --------------------------PAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAM 112 (444)
T ss_dssp --------------------------CCEEECSSTTTHHHHTTCTTCCEEEECCCGGGHHHHHHHHH
T ss_pred --------------------------CCceeccCCCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH
Confidence 123455 8888876 5899999999887766665543
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.011 Score=61.56 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=35.4
Q ss_pred hHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhh
Q 012349 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVD 86 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~ 86 (465)
|-.+|.+..... +++||+|||+|.||..++..+.+..+ .+ |-+++++++.++
T Consensus 10 l~~~l~~r~~~~-----k~IRVGIIGaG~iG~~~~~~l~~~~~-----veLvAV~D~~~era~ 62 (446)
T 3upl_A 10 LARDLAARAETG-----KPIRIGLIGAGEMGTDIVTQVARMQG-----IEVGALSARRLPNTF 62 (446)
T ss_dssp HHHHHHHHHHTT-----CCEEEEEECCSHHHHHHHHHHTTSSS-----EEEEEEECSSTHHHH
T ss_pred HHHHHHHHHhcC-----CceEEEEECChHHHHHHHHHHhhCCC-----cEEEEEEeCCHHHHH
Confidence 445554433322 46899999999999999988765412 44 557888876554
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0039 Score=64.78 Aligned_cols=106 Identities=13% Similarity=0.085 Sum_probs=69.1
Q ss_pred HHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHH
Q 012349 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLR 105 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~ 105 (465)
+.-+|.+++-.+.. -.-++|+|+|.|.+|..+|..|... | .+|++|++++..... .
T Consensus 195 ~slldgi~ratg~~-L~GktVgIiG~G~IG~~vA~~Lka~-G-----a~Viv~D~~p~~a~~-----------A------ 250 (436)
T 3h9u_A 195 ESLVDGIKRATDVM-IAGKTACVCGYGDVGKGCAAALRGF-G-----ARVVVTEVDPINALQ-----------A------ 250 (436)
T ss_dssp HHHHHHHHHHHCCC-CTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHH-----------H------
T ss_pred HHHHHHHHHhcCCc-ccCCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEECCChhhhHH-----------H------
Confidence 34456666655432 2347999999999999999999877 7 789999998642211 0
Q ss_pred hhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhh
Q 012349 106 RLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWK 185 (465)
Q Consensus 106 ~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~ 185 (465)
.. .+.. ..++++++..+|+|++++....+-. .+....++
T Consensus 251 --------~~------------------------------~G~~-~~sL~eal~~ADVVilt~gt~~iI~--~e~l~~MK 289 (436)
T 3h9u_A 251 --------AM------------------------------EGYQ-VLLVEDVVEEAHIFVTTTGNDDIIT--SEHFPRMR 289 (436)
T ss_dssp --------HH------------------------------TTCE-ECCHHHHTTTCSEEEECSSCSCSBC--TTTGGGCC
T ss_pred --------HH------------------------------hCCe-ecCHHHHHhhCCEEEECCCCcCccC--HHHHhhcC
Confidence 00 0122 2478899999999998776543311 12223345
Q ss_pred ccCCCCEEEEeecc
Q 012349 186 ERITVPVIISLAKG 199 (465)
Q Consensus 186 ~~~~~~ivIs~~kG 199 (465)
+ +.+++.+..|
T Consensus 290 ~---gAIVINvgRg 300 (436)
T 3h9u_A 290 D---DAIVCNIGHF 300 (436)
T ss_dssp T---TEEEEECSSS
T ss_pred C---CcEEEEeCCC
Confidence 5 6788888766
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0045 Score=63.74 Aligned_cols=98 Identities=15% Similarity=0.142 Sum_probs=60.7
Q ss_pred CCceEEEECccH---HHHHHHHHHHHhcCCCCCCeeEE--EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccch
Q 012349 42 DPLRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIR--IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKY 116 (465)
Q Consensus 42 ~~mkIaIIGaGa---mGsalA~~La~~~G~~~~~~~V~--l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~ 116 (465)
+++||+|||+|. ||...+..+... + +.++. +++++++.+++. -++.+ .+
T Consensus 36 ~~~rvgiiG~G~~~~ig~~h~~~~~~~-~----~~~lva~v~d~~~~~a~~~--------a~~~g------------~~- 89 (417)
T 3v5n_A 36 KRIRLGMVGGGSGAFIGAVHRIAARLD-D----HYELVAGALSSTPEKAEAS--------GRELG------------LD- 89 (417)
T ss_dssp CCEEEEEESCC--CHHHHHHHHHHHHT-S----CEEEEEEECCSSHHHHHHH--------HHHHT------------CC-
T ss_pred CcceEEEEcCCCchHHHHHHHHHHhhC-C----CcEEEEEEeCCCHHHHHHH--------HHHcC------------CC-
Confidence 347999999999 999888877665 3 14554 678887654421 00000 00
Q ss_pred hhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC-------CCEEEEecCcchHHHHHHHHHHhhhccCC
Q 012349 117 VEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD-------ADIVINGLPSTETKEVFEEISRYWKERIT 189 (465)
Q Consensus 117 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~-------aDiVIlaVps~~l~~vl~~l~~~l~~~~~ 189 (465)
...+.+|.++.+.+ .|+|++|+|.....+++.... ..
T Consensus 90 ------------------------------~~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al---~a--- 133 (417)
T 3v5n_A 90 ------------------------------PSRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFL---KR--- 133 (417)
T ss_dssp ------------------------------GGGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHH---TT---
T ss_pred ------------------------------cccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHH---hC---
Confidence 01245677777654 899999999987777666543 33
Q ss_pred CCEEEEeeccccc
Q 012349 190 VPVIISLAKGVEA 202 (465)
Q Consensus 190 ~~ivIs~~kGi~~ 202 (465)
+.. |.+-|-+..
T Consensus 134 Gkh-Vl~EKPla~ 145 (417)
T 3v5n_A 134 GIH-VICDKPLTS 145 (417)
T ss_dssp TCE-EEEESSSCS
T ss_pred CCe-EEEECCCcC
Confidence 333 447776544
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0076 Score=60.31 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=32.8
Q ss_pred eEEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 148 LKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 148 i~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+.+.+|+++.+.+ .|+|++|+|+....+++..... . +..|+ +-|-+..
T Consensus 51 ~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---a---Gk~Vl-~EKP~a~ 100 (349)
T 3i23_A 51 VNFTADLNELLTDPEIELITICTPAHTHYDLAKQAIL---A---GKSVI-VEKPFCD 100 (349)
T ss_dssp CEEESCTHHHHSCTTCCEEEECSCGGGHHHHHHHHHH---T---TCEEE-ECSCSCS
T ss_pred CeEECCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHH---c---CCEEE-EECCCcC
Confidence 4566888888765 8999999999877776665443 2 33343 5666543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0024 Score=65.40 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=33.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
..||+|||+|.+|...+..+... | .+|++|+++++..+.
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~l-G-----a~V~v~D~~~~~l~~ 222 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRL-G-----AKTTGYDVRPEVAEQ 222 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHH-T-----CEEEEECSSGGGHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 47999999999999999998877 7 789999999875543
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.007 Score=61.03 Aligned_cols=94 Identities=13% Similarity=0.083 Sum_probs=60.9
Q ss_pred CceEEEECccHHHH-HHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGs-alA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
++||+|||+|.+|. .++..+... + .+ |-+++++++.+++. .+. ++
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~-~-----~~lvav~d~~~~~a~~~---------a~~-------------~~----- 72 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRA-G-----ARLAGFHEKDDALAAEF---------SAV-------------YA----- 72 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHT-T-----CEEEEEECSCHHHHHHH---------HHH-------------SS-----
T ss_pred CcEEEEECcCHHHHHHHHHHhhcC-C-----cEEEEEEcCCHHHHHHH---------HHH-------------cC-----
Confidence 47999999999984 566666544 4 55 56888887654421 000 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
...+.+|.++.+.+ .|+|++|+|.....+++..... . +.. |.+-|
T Consensus 73 --------------------------~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~---a---Gkh-Vl~EK 119 (361)
T 3u3x_A 73 --------------------------DARRIATAEEILEDENIGLIVSAAVSSERAELAIRAMQ---H---GKD-VLVDK 119 (361)
T ss_dssp --------------------------SCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHHHHHH---T---TCE-EEEES
T ss_pred --------------------------CCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---C---CCe-EEEeC
Confidence 12356788888765 8999999999877776665443 2 333 34677
Q ss_pred cccc
Q 012349 199 GVEA 202 (465)
Q Consensus 199 Gi~~ 202 (465)
-+..
T Consensus 120 Pla~ 123 (361)
T 3u3x_A 120 PGMT 123 (361)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 6644
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.015 Score=57.38 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=62.6
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.|+||+|||+ |.||...+..+... + ..-|.+++++++... ..+ ..+
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~-~----~~lvav~d~~~~~~~----------~~~-------------~~~----- 48 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEV-G----GVLVASLDPATNVGL----------VDS-------------FFP----- 48 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHT-T----CEEEEEECSSCCCGG----------GGG-------------TCT-----
T ss_pred CceEEEEECCChHHHHHHHHHHHhC-C----CEEEEEEcCCHHHHH----------HHh-------------hCC-----
Confidence 4689999999 78999999999876 5 134668888775311 000 111
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh----------cCCCEEEEecCcchHHHHHHHHHHhhhccCCC
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV----------WDADIVINGLPSTETKEVFEEISRYWKERITV 190 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal----------~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~ 190 (465)
...+.+|.++.+ .+.|+|++|+|+....+++..... . +
T Consensus 49 --------------------------~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~---a---G 96 (312)
T 3o9z_A 49 --------------------------EAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALR---L---G 96 (312)
T ss_dssp --------------------------TCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHH---T---T
T ss_pred --------------------------CCceeCCHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHH---C---C
Confidence 234566777655 568999999999887777666543 2 3
Q ss_pred CEEEEeeccccc
Q 012349 191 PVIISLAKGVEA 202 (465)
Q Consensus 191 ~ivIs~~kGi~~ 202 (465)
..| .+-|-+..
T Consensus 97 khV-l~EKPla~ 107 (312)
T 3o9z_A 97 ANA-LSEKPLVL 107 (312)
T ss_dssp CEE-EECSSSCS
T ss_pred CeE-EEECCCCC
Confidence 334 47776654
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0053 Score=62.65 Aligned_cols=97 Identities=9% Similarity=0.034 Sum_probs=61.4
Q ss_pred CceEEEECccH---HHHHHHHHHHHhcCCCCCCeeEE--EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 43 PLRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIR--IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 43 ~mkIaIIGaGa---mGsalA~~La~~~G~~~~~~~V~--l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
++||+|||+|. ||...+..+... + +.++. +++++++..++. -++.+ .+
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~-~----~~~lva~v~d~~~~~a~~~--------a~~~g------------~~-- 64 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRD-N----TFVLVAGAFDIDPIRGSAF--------GEQLG------------VD-- 64 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGG-G----SEEEEEEECCSSHHHHHHH--------HHHTT------------CC--
T ss_pred cceEEEEcCCccchhHHHHHHHHhhC-C----CeEEEEEEeCCCHHHHHHH--------HHHhC------------CC--
Confidence 47999999999 999988887765 3 14554 578887654321 00000 00
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcC-------CCEEEEecCcchHHHHHHHHHHhhhccCCC
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD-------ADIVINGLPSTETKEVFEEISRYWKERITV 190 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~-------aDiVIlaVps~~l~~vl~~l~~~l~~~~~~ 190 (465)
...+.+|.++.+.+ .|+|++|+|.....+++..... . +
T Consensus 65 -----------------------------~~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~---a---G 109 (398)
T 3dty_A 65 -----------------------------SERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALE---A---G 109 (398)
T ss_dssp -----------------------------GGGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHH---T---T
T ss_pred -----------------------------cceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHH---C---C
Confidence 11245677777653 8999999999887777665543 2 3
Q ss_pred CEEEEeeccccc
Q 012349 191 PVIISLAKGVEA 202 (465)
Q Consensus 191 ~ivIs~~kGi~~ 202 (465)
..| .+-|-+..
T Consensus 110 khV-l~EKPla~ 120 (398)
T 3dty_A 110 LHV-VCEKPLCF 120 (398)
T ss_dssp CEE-EECSCSCS
T ss_pred CeE-EEeCCCcC
Confidence 333 45666544
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.018 Score=55.66 Aligned_cols=65 Identities=23% Similarity=0.190 Sum_probs=46.2
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|-++-.|-.-.--+.-|++. +. .-..+++.|+|+|.+|.+++..|++. | .+|++|+|+.+.++
T Consensus 92 ~~g~l~G~ntD~~G~~~~L~~~-~~-~l~~k~vlViGaGg~g~a~a~~L~~~-G-----~~V~v~~R~~~~~~ 156 (271)
T 1nyt_A 92 EDGRLLGDNTDGVGLLSDLERL-SF-IRPGLRILLIGAGGASRGVLLPLLSL-D-----CAVTITNRTVSRAE 156 (271)
T ss_dssp TTSCEEEECCHHHHHHHHHHHH-TC-CCTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHH
T ss_pred CCCeEEEeCCCHHHHHHHHHhc-Cc-CcCCCEEEEECCcHHHHHHHHHHHHc-C-----CEEEEEECCHHHHH
Confidence 4565566665544444445442 22 12346899999999999999999998 7 79999999976544
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0061 Score=64.22 Aligned_cols=92 Identities=16% Similarity=0.050 Sum_probs=62.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...++|+|||.|.+|..+|..+... | .+|++|+++...... ...
T Consensus 255 l~GktVgIIG~G~IG~~vA~~l~~~-G-----~~Viv~d~~~~~~~~-------------------------a~~----- 298 (479)
T 1v8b_A 255 ISGKIVVICGYGDVGKGCASSMKGL-G-----ARVYITEIDPICAIQ-------------------------AVM----- 298 (479)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCHHHHHH-------------------------HHT-----
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhC-c-----CEEEEEeCChhhHHH-------------------------HHH-----
Confidence 3457999999999999999999877 7 899999998743210 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
..+.+ .++++++..+|+|++++....+-. .+....+++ +++++.+.-|
T Consensus 299 -------------------------~g~~~-~~l~ell~~aDiVi~~~~t~~lI~--~~~l~~MK~---gailiNvgrg 346 (479)
T 1v8b_A 299 -------------------------EGFNV-VTLDEIVDKGDFFITCTGNVDVIK--LEHLLKMKN---NAVVGNIGHF 346 (479)
T ss_dssp -------------------------TTCEE-CCHHHHTTTCSEEEECCSSSSSBC--HHHHTTCCT---TCEEEECSST
T ss_pred -------------------------cCCEe-cCHHHHHhcCCEEEECCChhhhcC--HHHHhhcCC---CcEEEEeCCC
Confidence 01222 468888999999999975443211 122233555 6788887766
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0062 Score=64.43 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=32.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
..++|+|+|+|.+|..+|..+... | .+|++|++++..
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~-G-----a~Viv~d~~~~~ 309 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQ-G-----ARVSVTEIDPIN 309 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHH
T ss_pred CcCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCCHHH
Confidence 347899999999999999999876 7 789999998754
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.03 Score=55.52 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=66.1
Q ss_pred CCceEEEE-Cc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaII-Ga-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
++.+|+|| |+ |.+|...+..|.+. | ++ .+|.-++..... ..
T Consensus 12 ~~~siaVV~Gasg~~G~~~~~~l~~~-G-----~~-~v~~VnP~~~g~-------------------------~i----- 54 (305)
T 2fp4_A 12 DKNTKVICQGFTGKQGTFHSQQALEY-G-----TN-LVGGTTPGKGGK-------------------------TH----- 54 (305)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTTC-------------------------EE-----
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHC-C-----Cc-EEEEeCCCcCcc-------------------------eE-----
Confidence 34678888 98 99999999999887 7 66 455555531000 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
..+.+..+++++.+ +.|+++++||+....++++++... . -..++.++
T Consensus 55 --------------------------~G~~vy~sl~el~~~~~vD~avI~vP~~~~~~~~~e~i~~-G----i~~iv~~t 103 (305)
T 2fp4_A 55 --------------------------LGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDA-E----VPLVVCIT 103 (305)
T ss_dssp --------------------------TTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHT-T----CSEEEECC
T ss_pred --------------------------CCeeeechHHHhhhcCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEEC
Confidence 03445667777777 899999999999999999887653 1 13467788
Q ss_pred cccccc
Q 012349 198 KGVEAE 203 (465)
Q Consensus 198 kGi~~~ 203 (465)
.|+..+
T Consensus 104 ~G~~~~ 109 (305)
T 2fp4_A 104 EGIPQQ 109 (305)
T ss_dssp CCCCHH
T ss_pred CCCChH
Confidence 898654
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.02 Score=56.64 Aligned_cols=95 Identities=15% Similarity=0.033 Sum_probs=62.2
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.|+||+|||+ |.||...+..+... + ..-|-+++++++... ..+ ..+
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~-~----~~lvav~d~~~~~~~----------~~~-------------~~~----- 48 (318)
T 3oa2_A 2 HMKNFALIGAAGYIAPRHMRAIKDT-G----NCLVSAYDINDSVGI----------IDS-------------ISP----- 48 (318)
T ss_dssp -CCEEEEETTTSSSHHHHHHHHHHT-T----CEEEEEECSSCCCGG----------GGG-------------TCT-----
T ss_pred CceEEEEECCCcHHHHHHHHHHHhC-C----CEEEEEEcCCHHHHH----------HHh-------------hCC-----
Confidence 4689999999 78999999999876 5 134667888765311 000 011
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-----------cCCCEEEEecCcchHHHHHHHHHHhhhccCC
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-----------WDADIVINGLPSTETKEVFEEISRYWKERIT 189 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-----------~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~ 189 (465)
...+.+|.++.+ .+.|+|++|+|+....+++..... .
T Consensus 49 --------------------------~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H~~~~~~al~---a--- 96 (318)
T 3oa2_A 49 --------------------------QSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAAGLR---L--- 96 (318)
T ss_dssp --------------------------TCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCGGGHHHHHHHHHH---T---
T ss_pred --------------------------CCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCcHHHHHHHHHHHH---C---
Confidence 234566777654 568999999999887777666543 2
Q ss_pred CCEEEEeeccccc
Q 012349 190 VPVIISLAKGVEA 202 (465)
Q Consensus 190 ~~ivIs~~kGi~~ 202 (465)
+.. |.+-|-+..
T Consensus 97 Gkh-Vl~EKPla~ 108 (318)
T 3oa2_A 97 GCD-VICEKPLVP 108 (318)
T ss_dssp TCE-EEECSSCCS
T ss_pred CCe-EEEECCCcC
Confidence 333 347776544
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0039 Score=62.71 Aligned_cols=91 Identities=24% Similarity=0.248 Sum_probs=62.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.++|+|||.|.+|..+|..+..- | .+|..|++...... .. .
T Consensus 141 g~tvGIiG~G~IG~~va~~~~~f-g-----~~v~~~d~~~~~~~-----------~~---------------~------- 181 (334)
T 3kb6_A 141 RLTLGVIGTGRIGSRVAMYGLAF-G-----MKVLCYDVVKREDL-----------KE---------------K------- 181 (334)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHH-----------HH---------------T-------
T ss_pred CcEEEEECcchHHHHHHHhhccc-C-----ceeeecCCccchhh-----------hh---------------c-------
Confidence 36899999999999999998765 6 79999987653100 00 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
... ..++++.++.||+|++.+|-. .++.++ ++.-..+++ ++++|.++-|=
T Consensus 182 ------------------------~~~-~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~---~a~lIN~aRG~ 233 (334)
T 3kb6_A 182 ------------------------GCV-YTSLDELLKESDVISLHVPYTKETHHMINEERISLMKD---GVYLINTARGK 233 (334)
T ss_dssp ------------------------TCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCT---TEEEEECSCGG
T ss_pred ------------------------Cce-ecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCC---CeEEEecCccc
Confidence 122 246788899999999999943 444433 222234555 68899888873
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.011 Score=59.47 Aligned_cols=40 Identities=13% Similarity=0.309 Sum_probs=31.0
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCC--CeeEEEEecCc
Q 012349 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRD--KVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIG-aGamGsalA~~La~~~G~~~~--~~~V~l~~r~~ 82 (465)
.+|||+|+| +|.+|++++..|+.. |.+.. ..++.|+|+++
T Consensus 2 ~~~kV~V~GaaG~VG~~la~~L~~~-~~~~e~~~~~l~L~Di~~ 44 (333)
T 5mdh_A 2 EPIRVLVTGAAGQIAYSLLYSIGNG-SVFGKDQPIILVLLDITP 44 (333)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTT-TTTCTTCCEEEEEECCGG
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhC-CCccccCCCEEEEEeCCC
Confidence 468999999 799999999999987 64311 12489999875
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0067 Score=64.10 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=62.2
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...++|+|||.|.+|..+|..+..- | .+|++|++++..... . ..
T Consensus 275 L~GktVgIIG~G~IG~~vA~~l~~~-G-----~~V~v~d~~~~~~~~-----------a--------------~~----- 318 (494)
T 3d64_A 275 IAGKIAVVAGYGDVGKGCAQSLRGL-G-----ATVWVTEIDPICALQ-----------A--------------AM----- 318 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSCHHHHHH-----------H--------------HT-----
T ss_pred cCCCEEEEEccCHHHHHHHHHHHHC-C-----CEEEEEeCChHhHHH-----------H--------------HH-----
Confidence 3457999999999999999999866 6 899999998742110 0 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
..... .++++++..+|+|++++....+-. ++....+++ ++++|.+.-|
T Consensus 319 -------------------------~G~~~-~~l~ell~~aDiVi~~~~t~~lI~--~~~l~~MK~---gAilINvgrg 366 (494)
T 3d64_A 319 -------------------------EGYRV-VTMEYAADKADIFVTATGNYHVIN--HDHMKAMRH---NAIVCNIGHF 366 (494)
T ss_dssp -------------------------TTCEE-CCHHHHTTTCSEEEECSSSSCSBC--HHHHHHCCT---TEEEEECSSS
T ss_pred -------------------------cCCEe-CCHHHHHhcCCEEEECCCcccccC--HHHHhhCCC---CcEEEEcCCC
Confidence 01222 368888999999999985443210 223334455 6788887766
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.025 Score=55.97 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=28.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
|||+|+|+ |.+|+.++..|+.. |.+ .++.++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~-~~~---~el~L~Di 34 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKE-PFM---KDLVLIGR 34 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC-TTC---CEEEEEEC
T ss_pred CEEEEECCCChhHHHHHHHHHhC-CCC---CEEEEEcC
Confidence 69999999 99999999999877 521 36899998
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.023 Score=55.86 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=66.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+.+||+|+|+ |.||..++..+.+. | .+ .++..++.... ...
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~-g-----~~-~v~~VnP~~~g-------------------------~~i------ 47 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTY-G-----TK-IVAGVTPGKGG-------------------------MEV------ 47 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTT-------------------------CEE------
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHc-C-----Ce-EEEEECCCCCC-------------------------ceE------
Confidence 4479999998 99999999998887 7 55 34454442100 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
..+.+..+++++.+ ++|+++++||+....+++++.... . -..+|..+.
T Consensus 48 -------------------------~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~~~ea~~~-G----i~~vVi~t~ 97 (288)
T 1oi7_A 48 -------------------------LGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHA-G----IPLIVLITE 97 (288)
T ss_dssp -------------------------TTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHHHHHT-T----CSEEEECCS
T ss_pred -------------------------CCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHHHC-C----CCEEEEECC
Confidence 03456677888777 899999999999999999887653 1 133666788
Q ss_pred ccccc
Q 012349 199 GVEAE 203 (465)
Q Consensus 199 Gi~~~ 203 (465)
|+...
T Consensus 98 G~~~~ 102 (288)
T 1oi7_A 98 GIPTL 102 (288)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 98654
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0096 Score=58.08 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=45.8
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+|-++-.|-.-.-=+.-|++ .+ .+++.|||+|.+|.+++..|++. | .+|++++|+.+++++
T Consensus 95 ~~g~l~G~NTD~~Gf~~~L~~-~~-----~k~vlvlGaGGaaraia~~L~~~-G-----~~v~V~nRt~~ka~~ 156 (269)
T 3phh_A 95 ENDELVGYNTDALGFYLSLKQ-KN-----YQNALILGAGGSAKALACELKKQ-G-----LQVSVLNRSSRGLDF 156 (269)
T ss_dssp ETTEEEEECCHHHHHHHHCC---------CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCTTHHH
T ss_pred eCCEEEEecChHHHHHHHHHH-cC-----CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHHH
Confidence 366666667655444444443 12 47999999999999999999998 7 799999999876553
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0075 Score=61.99 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=32.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~ 85 (465)
..++|+|||+|.||.+++..+... | . +|++++|+.+.+
T Consensus 166 ~g~~VlIiGaG~iG~~~a~~l~~~-G-----~~~V~v~~r~~~ra 204 (404)
T 1gpj_A 166 HDKTVLVVGAGEMGKTVAKSLVDR-G-----VRAVLVANRTYERA 204 (404)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHH-C-----CSEEEEECSSHHHH
T ss_pred cCCEEEEEChHHHHHHHHHHHHHC-C-----CCEEEEEeCCHHHH
Confidence 347999999999999999999888 7 6 899999987643
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.017 Score=57.87 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=33.2
Q ss_pred EEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 149 ~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
.+.+|.++.+. +.|+|++|||+....+++..... . +.. |.+-|-+...
T Consensus 81 ~~y~d~~ell~~~~iDaV~IatP~~~H~~~a~~al~---a---Gkh-Vl~EKPla~~ 130 (393)
T 4fb5_A 81 KATADWRALIADPEVDVVSVTTPNQFHAEMAIAALE---A---GKH-VWCEKPMAPA 130 (393)
T ss_dssp EEESCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHH---T---TCE-EEECSCSCSS
T ss_pred eecCCHHHHhcCCCCcEEEECCChHHHHHHHHHHHh---c---CCe-EEEccCCccc
Confidence 35688888775 47999999999887777665543 2 233 4577776553
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.011 Score=58.12 Aligned_cols=64 Identities=17% Similarity=0.030 Sum_probs=44.9
Q ss_pred CCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhh
Q 012349 15 NGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD 86 (465)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~ 86 (465)
+|-++-.|-.-.-=+.-|++. + .+...+++.|+|+|.+|.+++..|++. | . +|++++|+.++++
T Consensus 96 ~g~l~G~NTD~~G~~~~L~~~-~-~~~~~k~vlvlGaGGaaraia~~L~~~-G-----~~~v~v~nRt~~ka~ 160 (282)
T 3fbt_A 96 REGISGFNTDYIGFGKMLSKF-R-VEIKNNICVVLGSGGAARAVLQYLKDN-F-----AKDIYVVTRNPEKTS 160 (282)
T ss_dssp SSCEEEECCHHHHHHHHHHHT-T-CCCTTSEEEEECSSTTHHHHHHHHHHT-T-----CSEEEEEESCHHHHH
T ss_pred CCEEEeeCCcHHHHHHHHHHc-C-CCccCCEEEEECCcHHHHHHHHHHHHc-C-----CCEEEEEeCCHHHHH
Confidence 566666665544333444432 2 122347899999999999999999988 7 5 8999999986544
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.012 Score=56.61 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|+|+|.+|+.++..|+.. |. .+++++|++.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~-Gv----g~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGA-GV----GTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-TC----SEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHc-CC----CeEEEEeCCC
Confidence 6899999999999999999998 83 5899998875
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.012 Score=50.65 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=60.2
Q ss_pred CCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 42 DPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 42 ~~mkIaIIGa----GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
.+++|+|||+ |.+|..+...|.+. | ++|+.+....+.+.
T Consensus 3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~-g-----~~V~pVnP~~~~i~------------------------------- 45 (122)
T 3ff4_A 3 AMKKTLILGATPETNRYAYLAAERLKSH-G-----HEFIPVGRKKGEVL------------------------------- 45 (122)
T ss_dssp CCCCEEEETCCSCTTSHHHHHHHHHHHH-T-----CCEEEESSSCSEET-------------------------------
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHC-C-----CeEEEECCCCCcCC-------------------------------
Confidence 5678999998 56899999999888 7 67776655432111
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
+..+..++.+.-. .|++++++|+..+.++++++... .. + .+.++
T Consensus 46 -----------------------------G~~~y~sl~dlp~-vDlavi~~p~~~v~~~v~e~~~~-g~---k--~v~~~ 89 (122)
T 3ff4_A 46 -----------------------------GKTIINERPVIEG-VDTVTLYINPQNQLSEYNYILSL-KP---K--RVIFN 89 (122)
T ss_dssp -----------------------------TEECBCSCCCCTT-CCEEEECSCHHHHGGGHHHHHHH-CC---S--EEEEC
T ss_pred -----------------------------CeeccCChHHCCC-CCEEEEEeCHHHHHHHHHHHHhc-CC---C--EEEEC
Confidence 1111222222223 79999999999999999998764 21 2 34588
Q ss_pred cccccc
Q 012349 198 KGVEAE 203 (465)
Q Consensus 198 kGi~~~ 203 (465)
.|+..+
T Consensus 90 ~G~~~~ 95 (122)
T 3ff4_A 90 PGTENE 95 (122)
T ss_dssp TTCCCH
T ss_pred CCCChH
Confidence 898654
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.033 Score=54.97 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=67.1
Q ss_pred cCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccc
Q 012349 37 GKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK 115 (465)
Q Consensus 37 ~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~ 115 (465)
...-....+|+|+|+ |.||..++..+.+. | .+ .++..++.... ...
T Consensus 7 ~~l~~~~~~vvV~Gasg~~G~~~~~~l~~~-g-----~~-~v~~VnP~~~g-------------------------~~i- 53 (297)
T 2yv2_A 7 AVLVDSETRVLVQGITGREGSFHAKAMLEY-G-----TK-VVAGVTPGKGG-------------------------SEV- 53 (297)
T ss_dssp --CCSTTCEEEEETTTSHHHHHHHHHHHHH-T-----CE-EEEEECTTCTT-------------------------CEE-
T ss_pred hHhhCCCCEEEEECCCCCHHHHHHHHHHhC-C-----Cc-EEEEeCCCCCC-------------------------ceE-
Confidence 333344578989998 99999999998887 7 55 45555542100 000
Q ss_pred hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--C-CCEEEEecCcchHHHHHHHHHHhhhccCCCCE
Q 012349 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--D-ADIVINGLPSTETKEVFEEISRYWKERITVPV 192 (465)
Q Consensus 116 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~-aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~i 192 (465)
..+.+..+++++.+ + +|+++++||+....+++++.... . -..
T Consensus 54 ------------------------------~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~~v~ea~~~-G----i~~ 98 (297)
T 2yv2_A 54 ------------------------------HGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVDA-G----IRL 98 (297)
T ss_dssp ------------------------------TTEEEESSHHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHT-T----CSE
T ss_pred ------------------------------CCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHHHHHHHHHC-C----CCE
Confidence 03456677877765 5 99999999999999999887653 1 133
Q ss_pred EEEeecccccc
Q 012349 193 IISLAKGVEAE 203 (465)
Q Consensus 193 vIs~~kGi~~~ 203 (465)
+|.++.|+..+
T Consensus 99 vVi~t~G~~~~ 109 (297)
T 2yv2_A 99 VVVITEGIPVH 109 (297)
T ss_dssp EEECCCCCCHH
T ss_pred EEEECCCCCHH
Confidence 66678898653
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.021 Score=59.59 Aligned_cols=49 Identities=18% Similarity=0.101 Sum_probs=38.0
Q ss_pred HhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 28 RLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 28 ~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
-+|.++|..+.. ..-++|+|+|.|.+|..+|..+..- | .+|+++++++.
T Consensus 233 lvdgI~Ratg~~-L~GKTVgVIG~G~IGr~vA~~lraf-G-----a~Viv~d~dp~ 281 (464)
T 3n58_A 233 LVDGIRRGTDVM-MAGKVAVVCGYGDVGKGSAQSLAGA-G-----ARVKVTEVDPI 281 (464)
T ss_dssp HHHHHHHHHCCC-CTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHH
T ss_pred HHHHHHHhcCCc-ccCCEEEEECcCHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence 456667666532 2346899999999999999998766 7 78999988764
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.011 Score=62.01 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=57.1
Q ss_pred CCceEEEECc----cHHHHHHHHHHHHh-cCCCCCCeeE-EEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccc
Q 012349 42 DPLRIVGVGA----GAWGSVFTAMLQDS-YGYLRDKVLI-RIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK 115 (465)
Q Consensus 42 ~~mkIaIIGa----GamGsalA~~La~~-~G~~~~~~~V-~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~ 115 (465)
+++||+|||+ |.||...+..|.+. .+ .+| .+++++++.++.. .+. +
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~-----~~lvav~d~~~~~a~~~--------a~~-------------~-- 89 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQ-----FQIVALYNPTLKSSLQT--------IEQ-------------L-- 89 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTT-----EEEEEEECSCHHHHHHH--------HHH-------------T--
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCC-----eEEEEEEeCCHHHHHHH--------HHH-------------c--
Confidence 4579999999 99999999988764 23 554 5888887644321 000 0
Q ss_pred hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHH
Q 012349 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 116 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~ 181 (465)
++ ....+.+|.++.+. +.|+|++|+|.....+++....
T Consensus 90 g~----------------------------~~~~~~~d~~ell~~~~vD~V~I~tp~~~H~~~~~~al 129 (479)
T 2nvw_A 90 QL----------------------------KHATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNIL 129 (479)
T ss_dssp TC----------------------------TTCEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHHHH
T ss_pred CC----------------------------CcceeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH
Confidence 00 02346788888775 6899999999887766665543
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.029 Score=56.50 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..||.|||+|..|+.+|..|+.. |. .+++++|++.
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~a-GV----g~ItlvD~D~ 68 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGT 68 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TC----CEEEEECCCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CC----CEEEEecCCE
Confidence 36899999999999999999998 83 5899998875
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.016 Score=61.75 Aligned_cols=54 Identities=28% Similarity=0.333 Sum_probs=35.2
Q ss_pred HHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+.+++|+..++..... ++|.|+|+|.+|..+|..|.+. | ++|.+++.+++.++
T Consensus 332 ~~~l~~~~~~~~~~~~~-~~viIiG~G~~G~~la~~L~~~-g-----~~v~vid~d~~~~~ 385 (565)
T 4gx0_A 332 KSQLAALEYLIGEAPED-ELIFIIGHGRIGCAAAAFLDRK-P-----VPFILIDRQESPVC 385 (565)
T ss_dssp ---------------CC-CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSCCSSC
T ss_pred HHHHHHHHHHhcCCCCC-CCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEECChHHHh
Confidence 35567788888765555 8999999999999999999988 7 99999999987654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0043 Score=63.23 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=33.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..++|+|+|+|.+|.+++..+... | .+|++|+++++..+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~-G-----a~V~~~d~~~~~l~ 205 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGM-G-----ATVTVLDINIDKLR 205 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHH
Confidence 457999999999999999999877 7 78999999876543
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.028 Score=54.79 Aligned_cols=67 Identities=19% Similarity=0.049 Sum_probs=47.1
Q ss_pred CCCeeEeecchhHHHhHH-HhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 14 SNGLIHHTNGSLEERLDE-LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+|-++-.|-.-.--+.- |++. +. +...+++.|+|+|.+|.+++..|++. |. .+|++++|+.+++++
T Consensus 92 ~~g~l~G~NTD~~G~~~~lL~~~-~~-~l~~k~~lvlGaGg~~~aia~~L~~~-G~----~~v~i~~R~~~~a~~ 159 (272)
T 3pwz_A 92 EDGRIVAENFDGIGLLRDIEENL-GE-PLRNRRVLLLGAGGAVRGALLPFLQA-GP----SELVIANRDMAKALA 159 (272)
T ss_dssp ETTEEEEECCHHHHHHHHHHTTS-CC-CCTTSEEEEECCSHHHHHHHHHHHHT-CC----SEEEEECSCHHHHHH
T ss_pred cCCeEEEecCCHHHHHHHHHHHc-CC-CccCCEEEEECccHHHHHHHHHHHHc-CC----CEEEEEeCCHHHHHH
Confidence 467677777665444443 4332 21 22347899999999999999999998 71 389999999875543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0094 Score=61.87 Aligned_cols=51 Identities=24% Similarity=0.206 Sum_probs=39.0
Q ss_pred HHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 26 EERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+.-++-++|-.+.. ..-++|+|+|+|.+|..+|..+... | .+|+++++++.
T Consensus 204 ~s~~~gi~rat~~~-L~GktV~ViG~G~IGk~vA~~Lra~-G-----a~Viv~D~dp~ 254 (435)
T 3gvp_A 204 ESILDGLKRTTDMM-FGGKQVVVCGYGEVGKGCCAALKAM-G-----SIVYVTEIDPI 254 (435)
T ss_dssp HHHHHHHHHHHCCC-CTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHH
T ss_pred HHHHHHHHHhhCce-ecCCEEEEEeeCHHHHHHHHHHHHC-C-----CEEEEEeCChh
Confidence 44566677765432 2336899999999999999999776 7 78999998864
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.017 Score=53.12 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=32.2
Q ss_pred Cce-EEEECc-cHHHHHHHHHHH-HhcCCCCCCeeEEEEecCch-hhh
Q 012349 43 PLR-IVGVGA-GAWGSVFTAMLQ-DSYGYLRDKVLIRIWRRPGR-SVD 86 (465)
Q Consensus 43 ~mk-IaIIGa-GamGsalA~~La-~~~G~~~~~~~V~l~~r~~~-~~~ 86 (465)
||| |.|.|+ |.+|.+++..|+ +. | ++|++++|+++ .++
T Consensus 4 mmk~vlVtGasg~iG~~~~~~l~~~~-g-----~~V~~~~r~~~~~~~ 45 (221)
T 3r6d_A 4 MYXYITILGAAGQIAQXLTATLLTYT-D-----MHITLYGRQLKTRIP 45 (221)
T ss_dssp SCSEEEEESTTSHHHHHHHHHHHHHC-C-----CEEEEEESSHHHHSC
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHhcC-C-----ceEEEEecCccccch
Confidence 455 999995 999999999999 67 7 89999999976 544
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.024 Score=57.14 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=41.0
Q ss_pred HHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|.|.-.+++|...+. ..+|+|+|+|..|+.++..|+.. |. ..++++|.+.
T Consensus 16 ~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~-Gv----g~itlvD~d~ 70 (346)
T 1y8q_A 16 AAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILA-GV----KGLTMLDHEQ 70 (346)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred HHHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEECCC
Confidence 45777767777654333 36899999999999999999999 83 5899998764
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0079 Score=62.37 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=57.4
Q ss_pred CCceEEEECc----cHHHHHHHHHHHHh-cCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccc
Q 012349 42 DPLRIVGVGA----GAWGSVFTAMLQDS-YGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLK 115 (465)
Q Consensus 42 ~~mkIaIIGa----GamGsalA~~La~~-~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~ 115 (465)
+++||+|||+ |.||...+..|.+. .+ .+ |.+++++++.++.+ .+. +
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~-----~~lvav~d~~~~~~~~~---------a~~------------~-- 70 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQ-----FQITALYSPKIETSIAT---------IQR------------L-- 70 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTT-----EEEEEEECSSHHHHHHH---------HHH------------T--
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCC-----eEEEEEEeCCHHHHHHH---------HHH------------c--
Confidence 3579999999 99999999988764 23 55 45888887644321 100 0
Q ss_pred hhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHH
Q 012349 116 YVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISR 182 (465)
Q Consensus 116 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~ 182 (465)
+. ..+.+.+|.++.+. +.|+|++|+|.....+++.....
T Consensus 71 g~----------------------------~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~ 111 (438)
T 3btv_A 71 KL----------------------------SNATAFPTLESFASSSTIDMIVIAIQVASHYEVVMPLLE 111 (438)
T ss_dssp TC----------------------------TTCEEESSHHHHHHCSSCSEEEECSCHHHHHHHHHHHHH
T ss_pred CC----------------------------CcceeeCCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 00 02346678888775 58999999998877666655443
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.029 Score=55.93 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=41.7
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCc
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~ 82 (465)
.+|-++-.|-.-.-=+.-|++. + .+...+++.|+|+|.+|.+++..|++. | . +|++++|++
T Consensus 127 ~~g~l~G~NTD~~Gf~~~L~~~-~-~~l~gk~~lVlGaGG~g~aia~~L~~~-G-----a~~V~i~nR~~ 188 (315)
T 3tnl_A 127 DDGVLTGHITDGTGYMRALKEA-G-HDIIGKKMTICGAGGAATAICIQAALD-G-----VKEISIFNRKD 188 (315)
T ss_dssp ETTEEEEECCHHHHHHHHHHHT-T-CCCTTSEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEECSS
T ss_pred cCCEEEEeCCCHHHHHHHHHHc-C-CCccCCEEEEECCChHHHHHHHHHHHC-C-----CCEEEEEECCC
Confidence 3565554554433333344431 1 122346899999999999999999988 7 5 899999993
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.041 Score=52.80 Aligned_cols=63 Identities=19% Similarity=0.075 Sum_probs=36.8
Q ss_pred CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhh
Q 012349 160 DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS 238 (465)
Q Consensus 160 ~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ 238 (465)
++|+||-++++..+.+.++.... . +..+|..+-|+..+. .+.+.+.... ...+.++..||+.-
T Consensus 45 ~~DvvIDfT~p~a~~~~~~~a~~---~---g~~~VigTTG~~~e~---------~~~l~~aa~~-~~~~~vv~a~N~si 107 (245)
T 1p9l_A 45 NTEVVIDFTHPDVVMGNLEFLID---N---GIHAVVGTTGFTAER---------FQQVESWLVA-KPNTSVLIAPNFAI 107 (245)
T ss_dssp TCCEEEECSCTTTHHHHHHHHHH---T---TCEEEECCCCCCHHH---------HHHHHHHHHT-STTCEEEECSCCCH
T ss_pred CCcEEEEccChHHHHHHHHHHHH---c---CCCEEEcCCCCCHHH---------HHHHHHHHHh-CCCCCEEEECCccH
Confidence 67999978887777766665443 2 345666666876541 1234443211 01235677888765
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0087 Score=61.72 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=33.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..||+|||+|.+|...+..+..- | .+|++|+++++..+
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~l-G-----a~V~v~D~~~~~l~ 227 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRL-G-----AVVSATDVRPAAKE 227 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSTTHHH
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 47999999999999999998776 7 79999999987544
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0071 Score=61.30 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=33.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..++|+|+|+|.+|.+++..+... | .+|++++|+++..+
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~-G-----a~V~~~d~~~~~~~ 203 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGM-G-----AQVTILDVNHKRLQ 203 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECCHHHHH
Confidence 358999999999999999999887 7 89999999876443
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.012 Score=59.51 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=31.0
Q ss_pred EecCHHHHhcC--CCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 150 VVTNLQEAVWD--ADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 150 ~t~dl~eal~~--aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
+++|+++.+.+ .|+|++|+|+....+++.... .. +..|+ +-|-+..
T Consensus 71 ~~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al---~~---Gk~V~-~EKP~a~ 118 (383)
T 3oqb_A 71 WTTDLDAALADKNDTMFFDAATTQARPGLLTQAI---NA---GKHVY-CEKPIAT 118 (383)
T ss_dssp EESCHHHHHHCSSCCEEEECSCSSSSHHHHHHHH---TT---TCEEE-ECSCSCS
T ss_pred ccCCHHHHhcCCCCCEEEECCCchHHHHHHHHHH---HC---CCeEE-EcCCCCC
Confidence 56788887755 899999999877666655543 33 34444 7776543
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.019 Score=57.49 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=27.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeE-EEEecCchh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLI-RIWRRPGRS 84 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V-~l~~r~~~~ 84 (465)
++||+|+|+|.+|..++..|.+. . +.++ .+.+++++.
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~-~----~~elvav~d~~~~~ 39 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQ-D----DMELIGITKTKPDF 39 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-T----TEEEEEEEESSCSH
T ss_pred CcEEEEEeEhHHHHHHHHHHhcC-C----CCEEEEEEcCCHHH
Confidence 46999999999999999998765 2 1444 456666543
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.027 Score=56.26 Aligned_cols=100 Identities=16% Similarity=0.098 Sum_probs=62.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCC--CCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGY--LRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~--~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.||+|||+|.||...+..+....+. +....+ |-+++++++.+++. .+. +
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~---------a~~-------------~------ 58 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAA---------AGK-------------L------ 58 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHH---------HHH-------------H------
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHH---------HHH-------------c------
Confidence 4899999999999888877654110 000123 45778887654431 100 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
+ -..+.+|.++.+. +.|+|++|||+....+++..... . +.. |.+-|
T Consensus 59 -g------------------------~~~~~~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~al~---a---Gkh-Vl~EK 106 (390)
T 4h3v_A 59 -G------------------------WSTTETDWRTLLERDDVQLVDVCTPGDSHAEIAIAALE---A---GKH-VLCEK 106 (390)
T ss_dssp -T------------------------CSEEESCHHHHTTCTTCSEEEECSCGGGHHHHHHHHHH---T---TCE-EEEES
T ss_pred -C------------------------CCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHH---c---CCC-ceeec
Confidence 0 0135678888775 47999999999887777665543 2 333 45777
Q ss_pred ccccc
Q 012349 199 GVEAE 203 (465)
Q Consensus 199 Gi~~~ 203 (465)
-+...
T Consensus 107 Pla~t 111 (390)
T 4h3v_A 107 PLANT 111 (390)
T ss_dssp SSCSS
T ss_pred Ccccc
Confidence 76553
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0093 Score=61.30 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=33.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
|+||+|+|+|.+|.+++..|++. |.+. .+|.+++|+.+.+++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~-g~~~--~~V~v~~r~~~~~~~ 42 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN-REVF--SHITLASRTLSKCQE 42 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC-TTTC--CEEEEEESCHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCCc--eEEEEEECCHHHHHH
Confidence 47999999999999999999987 5100 279999999876554
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.043 Score=54.03 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=66.5
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...+|+|+|+ |.||..++..+.+. | .+ .++..++.... ...
T Consensus 12 ~~~~v~V~Gasg~~G~~~~~~l~~~-g-----~~-~V~~VnP~~~g-------------------------~~i------ 53 (294)
T 2yv1_A 12 ENTKAIVQGITGRQGSFHTKKMLEC-G-----TK-IVGGVTPGKGG-------------------------QNV------ 53 (294)
T ss_dssp TTCCEEEETTTSHHHHHHHHHHHHT-T-----CC-EEEEECTTCTT-------------------------CEE------
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhC-C-----Ce-EEEEeCCCCCC-------------------------ceE------
Confidence 3467899998 99999999998877 6 55 55555553100 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
.++.+..+++++.+ ++|+++++||+....+++++.... . -..+|..+.
T Consensus 54 -------------------------~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~~v~ea~~~-G----i~~vVi~t~ 103 (294)
T 2yv1_A 54 -------------------------HGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAIDA-G----IELIVVITE 103 (294)
T ss_dssp -------------------------TTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHT-T----CSEEEECCS
T ss_pred -------------------------CCEeeeCCHHHHhhcCCCCEEEEccCHHHHHHHHHHHHHC-C----CCEEEEECC
Confidence 03456677888777 899999999999999999887653 1 234666788
Q ss_pred ccccc
Q 012349 199 GVEAE 203 (465)
Q Consensus 199 Gi~~~ 203 (465)
|+..+
T Consensus 104 G~~~~ 108 (294)
T 2yv1_A 104 HIPVH 108 (294)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 98654
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.029 Score=54.89 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.1
Q ss_pred CCceEEEECccHHHHHHHHHHHH
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQD 64 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~ 64 (465)
+++||+|||+|.||...+..+..
T Consensus 6 ~~~rvgiIG~G~iG~~~~~~l~~ 28 (294)
T 1lc0_A 6 GKFGVVVVGVGRAGSVRLRDLKD 28 (294)
T ss_dssp CSEEEEEECCSHHHHHHHHHHTS
T ss_pred CcceEEEEEEcHHHHHHHHHHhc
Confidence 46899999999999998888764
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.014 Score=57.91 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=32.2
Q ss_pred EEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 149 ~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.+.+|.++.+. +.|+|++|+|.....+++..... . +.. |.+-|-+..
T Consensus 54 ~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~---a---Gkh-Vl~EKPla~ 102 (337)
T 3ip3_A 54 KKYNNWWEMLEKEKPDILVINTVFSLNGKILLEALE---R---KIH-AFVEKPIAT 102 (337)
T ss_dssp EECSSHHHHHHHHCCSEEEECSSHHHHHHHHHHHHH---T---TCE-EEECSSSCS
T ss_pred cccCCHHHHhcCCCCCEEEEeCCcchHHHHHHHHHH---C---CCc-EEEeCCCCC
Confidence 45678888775 48999999999877766655443 2 333 347776654
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.034 Score=55.89 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=30.5
Q ss_pred CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+.++...++|+||+|+|...-.++.+.+. +. +..+|.++.-+
T Consensus 68 ~~~~~~~~~Dvvf~a~p~~~s~~~~~~~~---~~---g~~vIDlSa~f 109 (337)
T 3dr3_A 68 DISEFSPGVDVVFLATAHEVSHDLAPQFL---EA---GCVVFDLSGAF 109 (337)
T ss_dssp SGGGTCTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred CHHHHhcCCCEEEECCChHHHHHHHHHHH---HC---CCEEEEcCCcc
Confidence 44443378999999999988887777764 33 56788887544
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.053 Score=56.71 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=46.0
Q ss_pred HHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 27 ~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+.+++++..+++.+....+|.|+|+|.+|..+|..|.+. ++|.++.+++++++.
T Consensus 219 ~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~-------~~v~iIE~d~~r~~~ 272 (461)
T 4g65_A 219 NHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQT-------YSVKLIERNLQRAEK 272 (461)
T ss_dssp TTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESCHHHHHH
T ss_pred chHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhc-------CceEEEecCHHHHHH
Confidence 567788888888888889999999999999999998543 789999999876654
|
| >3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.009 Score=61.17 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=71.3
Q ss_pred ceEEEECccHHH-HHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamG-salA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
||+..+|+|++| +.++..|.++ | ++|++.++++..++.+|+++ .|.-.+. +
T Consensus 1 mkavhfGaGniGRGfig~~l~~~-g-----~~v~f~dv~~~~i~~Ln~~~-------------------~Y~V~~~---g 52 (382)
T 3h2z_A 1 MKALHFGAGNIGRGFIGKLLADA-G-----IQLTFADVNQVVLDALNARH-------------------SYQVHVV---G 52 (382)
T ss_dssp CEEEEECCSHHHHHTHHHHHHHT-T-----CEEEEEESCHHHHHHHHHHS-------------------EEEEEEE---S
T ss_pred CcEEEECCCccchhhHHHHHHHc-C-----CeEEEEeCCHHHHHHHhcCC-------------------CEEEEEc---c
Confidence 799999999999 4555666666 7 89999999998777654332 1221110 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEe-c---CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhcc----C-CCCEE
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVV-T---NLQEAVWDADIVINGLPSTETKEVFEEISRYWKER----I-TVPVI 193 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t-~---dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~----~-~~~iv 193 (465)
...- ... ..++++. + +.-+++.++|+|..++.+..++.+...|...+... . +.-.|
T Consensus 53 ~~~~--------~~~-------v~~v~ai~s~~~~~~~~i~~adlitT~vG~~~l~~i~~~l~~~L~~R~~~~~~~plti 117 (382)
T 3h2z_A 53 ETEQ--------VDT-------VSGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKGLVKRKEQGNESPLNI 117 (382)
T ss_dssp SSEE--------EEE-------EESCEEEETTSSHHHHHHTTCSEEEECCCHHHHHHTHHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCcc--------eEE-------EEEEEEEeCcHHHHHHHHcCCCEEEECCCcccHHHHHHHHHHHHHHHHHcCCCCCcEE
Confidence 0000 000 0133332 1 23345789999999999988888877776655321 1 12347
Q ss_pred EEeecccccc
Q 012349 194 ISLAKGVEAE 203 (465)
Q Consensus 194 Is~~kGi~~~ 203 (465)
+||-|-....
T Consensus 118 lsCeN~~~ng 127 (382)
T 3h2z_A 118 IACENMVRGT 127 (382)
T ss_dssp EECCSSTTHH
T ss_pred EECCCccchH
Confidence 8888776544
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0089 Score=60.92 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=46.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+.||+|||+| ||...+..+.+. . ++.+ |-++++++++.++. .+. |
T Consensus 6 ~~~rv~VvG~G-~g~~h~~a~~~~-~---~~~elvav~~~~~~~a~~~---------a~~------------~------- 52 (372)
T 4gmf_A 6 PKQRVLIVGAK-FGEMYLNAFMQP-P---EGLELVGLLAQGSARSREL---------AHA------------F------- 52 (372)
T ss_dssp -CEEEEEECST-TTHHHHHTTSSC-C---TTEEEEEEECCSSHHHHHH---------HHH------------T-------
T ss_pred CCCEEEEEehH-HHHHHHHHHHhC-C---CCeEEEEEECCCHHHHHHH---------HHH------------h-------
Confidence 45799999999 898777766543 1 1244 44788888654431 100 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchH
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTET 173 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l 173 (465)
++.+.+|.++.+.+.|+++++||+...
T Consensus 53 --------------------------gv~~~~~~~~l~~~~D~v~i~~p~~~h 79 (372)
T 4gmf_A 53 --------------------------GIPLYTSPEQITGMPDIACIVVRSTVA 79 (372)
T ss_dssp --------------------------TCCEESSGGGCCSCCSEEEECCC--CT
T ss_pred --------------------------CCCEECCHHHHhcCCCEEEEECCCccc
Confidence 223457788888889999999998654
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.026 Score=56.94 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=26.4
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
++||+|+| +|.+|..+...|.++ . ..+|..+.++
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~-p----~~ev~~i~~s 42 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADH-P----MFELTALAAS 42 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC-S----SEEEEEEEEC
T ss_pred cceEEEECcCCHHHHHHHHHHhcC-C----CCEEEEEEcc
Confidence 37999999 799999999999765 3 2577666543
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.018 Score=62.02 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..||+|||+|..|+.+|..|+.. |. .+++++|.+.
T Consensus 327 ~~kVLIVGaGGLGs~va~~La~a-GV----G~ItLvD~D~ 361 (598)
T 3vh1_A 327 NTKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGT 361 (598)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TC----CEEEEECCSB
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEECCCc
Confidence 36899999999999999999998 83 5899998774
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.024 Score=56.72 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.8
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
|+||+|||+|.||+.++..+.++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~ 24 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRK 24 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT
T ss_pred cEEEEEEeccHHHHHHHHHHHhh
Confidence 58999999999999999998764
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.028 Score=57.51 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=31.9
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.-...||+|+|+|++|.++|..|... |. .+|++++|+
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~-G~----~~I~v~Dr~ 225 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDL-GV----KNVVAVDRK 225 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEETT
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhC-CC----CeEEEEECC
Confidence 34457999999999999999999988 72 489999998
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.076 Score=52.76 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=43.0
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|-++-.|-.-.-=+.-|++. + .....+++.|+|+|.+|.+++..|++. |. .+|++++|+.
T Consensus 121 ~~g~l~G~NTD~~Gf~~~L~~~-~-~~l~gk~~lVlGAGGaaraia~~L~~~-G~----~~v~v~nRt~ 182 (312)
T 3t4e_A 121 DDGYLRGYNTDGTGHIRAIKES-G-FDMRGKTMVLLGAGGAATAIGAQAAIE-GI----KEIKLFNRKD 182 (312)
T ss_dssp ETTEEEEECHHHHHHHHHHHHT-T-CCCTTCEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEECSS
T ss_pred cCCEEEEeCCcHHHHHHHHHhc-C-CCcCCCEEEEECcCHHHHHHHHHHHHc-CC----CEEEEEECCC
Confidence 3666666665444333444432 2 222346899999999999999999988 71 3899999994
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.025 Score=57.45 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=37.9
Q ss_pred hhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 33 RRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 33 ~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+..+|..+-.-++|+|+|+|+||..+|..|.+. | .+|++++++.+.++
T Consensus 163 ~~~~G~~~L~GktV~V~G~G~VG~~~A~~L~~~-G-----akVvv~D~~~~~l~ 210 (364)
T 1leh_A 163 KEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTE-G-----AKLVVTDVNKAAVS 210 (364)
T ss_dssp HHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred HhhccccCCCcCEEEEECchHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 444564344558999999999999999999988 7 88999998875443
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.027 Score=52.60 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=32.6
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
+||+|.|.| +|.+|.+++..|++. | .++|++++|+++..
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~-G----~~~V~~~~R~~~~~ 61 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADK-Q----TIKQTLFARQPAKI 61 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTC-T----TEEEEEEESSGGGS
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhC-C----CceEEEEEcChhhh
Confidence 357899999 599999999999987 5 26899999987644
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.051 Score=54.58 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=25.8
Q ss_pred eEEecCHHHHhcCCCEEEEecCcchHHHHHHHHH
Q 012349 148 LKVVTNLQEAVWDADIVINGLPSTETKEVFEEIS 181 (465)
Q Consensus 148 i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~ 181 (465)
+.++.+.++...++|+||.|+|+....+..+...
T Consensus 65 v~v~~~~e~l~~~vDvV~~aTp~~~s~~~a~~~~ 98 (340)
T 1b7g_O 65 IPVAGTVEDLIKTSDIVVDTTPNGVGAQYKPIYL 98 (340)
T ss_dssp CCCCCCHHHHHHHCSEEEECCSTTHHHHHHHHHH
T ss_pred cccccCHhHhhcCCCEEEECCCCchhHHHHHHHH
Confidence 4455677776678999999999998877766544
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.085 Score=51.97 Aligned_cols=64 Identities=28% Similarity=0.373 Sum_probs=31.3
Q ss_pred cCCCeeEeecchhHHHhHHHhhhhcC-CCC---CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 13 SSNGLIHHTNGSLEERLDELRRLMGK-AEG---DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||.---||..|---.|.--||. +|. ..+ ...||.|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 3 ~~~~~~~~~~~~~y~r~i~L~~-~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~a-GV----G~i~lvD~D~ 70 (292)
T 3h8v_A 3 SSHHHHHHSSGLVPRGSMALKR-MGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRC-GI----GKLLLFDYDK 70 (292)
T ss_dssp ------------------------------CGGGGCEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred cccccccccCCCCchHhhcccc-cChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHc-CC----CEEEEECCCc
Confidence 3444456777766666555554 333 122 236899999999999999999999 83 5899998875
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.013 Score=60.26 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=32.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..+|+|+|+|.+|...+..+... | .+|++++++++..+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~-G-----a~V~v~D~~~~~~~ 209 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSL-G-----AIVRAFDTRPEVKE 209 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCGGGHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHHHH
Confidence 47999999999999999988776 7 78999999886544
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.042 Score=55.14 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.8
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
|+||+|+|+|.+|..++..|.++
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~ 23 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ 23 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS
T ss_pred CeEEEEEeECHHHHHHHHHHHcC
Confidence 47999999999999999999865
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.011 Score=58.86 Aligned_cols=34 Identities=24% Similarity=0.466 Sum_probs=31.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||+|||+|.-|.++|..|++. | ++|+++.+++.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~-G-----~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKH-G-----IKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 8999999999999999999999 8 89999998754
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.022 Score=54.04 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..++|.|||+|.+|..-+..|.+. | .+|++++++.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~-G-----A~VtVvap~~ 64 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQE-G-----AAITVVAPTV 64 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGG-C-----CCEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEECCCC
Confidence 447999999999999999999998 7 8999998764
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.063 Score=53.25 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=28.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~ 84 (465)
+++||+|||+|.+|..++..+.++.. +.+ |.+++++++.
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~~~~~----~~elvav~d~~~~~ 42 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVLRNAK----YLEMGAMVGIDAAS 42 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCS----SEEEEEEECSCTTC
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhCc----CeEEEEEEeCChhh
Confidence 35799999999999999999976311 133 4567777653
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.018 Score=60.01 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=33.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+++|.|+|+|.+|.+++..|++. | ++|++++|+.+.++
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~-G-----~~V~v~~R~~~~a~ 40 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDS-G-----IKVTVACRTLESAK 40 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTT-T-----CEEEEEESSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-c-----CEEEEEECCHHHHH
Confidence 36899999999999999999987 7 78999999876543
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.11 Score=52.51 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=31.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+|+|||+|..|+.++..|+.. |. .+++++|++.
T Consensus 118 ~~~VlvvG~GglGs~va~~La~a-Gv----g~i~lvD~D~ 152 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATS-GI----GEIILIDNDQ 152 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHH-TC----SEEEEEECCB
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CC----CeEEEECCCc
Confidence 36899999999999999999999 83 5899999875
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.041 Score=50.48 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=33.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.||||.|.|+ |.+|.+++..|.+. | ++|++.+|+++..
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~ 41 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNR-G-----FEVTAVVRHPEKI 41 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTT-T-----CEEEEECSCGGGC
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHC-C-----CEEEEEEcCcccc
Confidence 3589999995 99999999999998 7 8999999987643
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.069 Score=57.66 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=31.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..||+|||+|..|+.+|..|+.. |. .+++++|.+.
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~a-GV----G~ItLvD~D~ 360 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAW-GV----RKITFVDNGT 360 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TC----CEEEEECCCB
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CC----CEEEEEcCCC
Confidence 36899999999999999999998 83 5899999875
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.021 Score=54.52 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=34.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
++|||.|.|+|.+|+.++..|.++ | ++|+..+|++...+
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~~ 42 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQ-G-----WRIIGTSRNPDQME 42 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGG-T-----CEEEEEESCGGGHH
T ss_pred CcCcEEEECCcHHHHHHHHHHHHC-C-----CEEEEEEcChhhhh
Confidence 458999999999999999999998 7 89999999876443
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.018 Score=51.83 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||||.-|.+.|..|+++ | ++|+++++++
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~-G-----~~V~v~Ek~~ 35 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAA-G-----HQVHLFDKSR 35 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCC
Confidence 3599999999999999999999 8 8999999865
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.018 Score=57.05 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.++|.|+|+|.+|..++..|.+. | + |++++++++.++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~-g-----~-v~vid~~~~~~~ 151 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGS-E-----V-FVLAEDENVRKK 151 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGS-C-----E-EEEESCGGGHHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhC-C-----c-EEEEeCChhhhh
Confidence 46899999999999999999887 6 8 999999886543
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.044 Score=50.85 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=33.8
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.|+|.|.|+ |.+|.+++..|++. | ++|++.+|+++..+
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~-G-----~~V~~~~R~~~~~~ 59 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNK-G-----HEPVAMVRNEEQGP 59 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSGGGHH
T ss_pred CCeEEEECCCChHHHHHHHHHHhC-C-----CeEEEEECChHHHH
Confidence 479999998 99999999999998 7 89999999986543
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.032 Score=56.84 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=32.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
...+|+|+|+|.+|.+.+..+... | .+|++++++++..+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~-G-----a~V~~~d~~~~~~~ 209 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRL-G-----AVVMATDVRAATKE 209 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 457999999999999999988776 7 67999999876543
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.046 Score=54.13 Aligned_cols=40 Identities=23% Similarity=0.417 Sum_probs=31.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCC--CCeeEEEEecCc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLR--DKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~--~~~~V~l~~r~~ 82 (465)
++|||+|+|+ |.+|+.++..|... |.+. ..++|.++++++
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~-g~~~~~~~~ev~l~D~~~ 45 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAG-EMLGKDQPVILQLLEIPQ 45 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTT-TTTCTTCCEEEEEECCGG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC-CCCCCCCCCEEEEEeCCC
Confidence 4589999997 99999999999987 6320 013899998864
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.02 Score=54.74 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=32.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+|||.|.|+|.+|+.++..|.+. | ++|+..+|+++
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 37 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQ-G-----HEVTGLRRSAQ 37 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECTTS
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCCcc
Confidence 47999999999999999999998 7 89999999865
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.087 Score=52.98 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=27.3
Q ss_pred hcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 158 l~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+.++|+||+|+|.....++++.+. .. +..+|+++.-+
T Consensus 66 ~~~vDvV~~a~g~~~s~~~a~~~~---~a---G~~VId~Sa~~ 102 (345)
T 2ozp_A 66 LEPADILVLALPHGVFAREFDRYS---AL---APVLVDLSADF 102 (345)
T ss_dssp CCCCSEEEECCCTTHHHHTHHHHH---TT---CSEEEECSSTT
T ss_pred hcCCCEEEEcCCcHHHHHHHHHHH---HC---CCEEEEcCccc
Confidence 578999999999998777766654 33 56788777533
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.057 Score=54.59 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=27.4
Q ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 156 eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+++.++|+||+|+|.....++++.+ . . +..+|.++.-+
T Consensus 76 ~~~~~~DvVf~alg~~~s~~~~~~~-~---~---G~~vIDlSa~~ 113 (352)
T 2nqt_A 76 AVLGGHDAVFLALPHGHSAVLAQQL-S---P---ETLIIDCGADF 113 (352)
T ss_dssp HHHTTCSEEEECCTTSCCHHHHHHS-C---T---TSEEEECSSTT
T ss_pred HHhcCCCEEEECCCCcchHHHHHHH-h---C---CCEEEEECCCc
Confidence 3467899999999998777666655 2 2 56788777544
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.087 Score=56.14 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=40.4
Q ss_pred HHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 27 ERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 27 ~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|.+.-.+++|...+. ..+|+|||+|..|+.++..|+.. |. ..++++|.+.
T Consensus 13 ~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~a-GV----g~itlvD~D~ 66 (531)
T 1tt5_A 13 QKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLP-GI----GSFTIIDGNQ 66 (531)
T ss_dssp HHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTT-TC----SEEEEECCCB
T ss_pred HHhhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHc-CC----CeEEEEeCCE
Confidence 4777666677654333 26899999999999999999998 83 5899999875
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.16 Score=52.70 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||.|||+|..|+.++..|+.. |. .+++++|.+.
T Consensus 41 ~~VlvvG~GGlGs~va~~La~a-Gv----g~i~ivD~D~ 74 (434)
T 1tt5_B 41 CKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDT 74 (434)
T ss_dssp CCEEEECSSTHHHHHHHHHHHT-TC----CCEEEEECCB
T ss_pred CEEEEECcCHHHHHHHHHHHHc-CC----CEEEEEcCCE
Confidence 5899999999999999999998 83 5799998875
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.048 Score=54.98 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=33.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..+|.|+|+|.+|.+.+..+... | .+|++++|++++++
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~-G-----a~V~v~dr~~~r~~ 204 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGL-G-----AQVQIFDINVERLS 204 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeCCHHHHH
Confidence 47999999999999999999887 7 78999999986554
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.051 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.8
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
++||+|||+|.+|+.++..+.++
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~ 25 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLER 25 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT
T ss_pred eeEEEEEcCCHHHHHHHHHHHhC
Confidence 47999999999999999998775
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.061 Score=54.44 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=25.6
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
+||+|+| .|.+|..+...|.+. . ..++..+...
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~-p----~~elvai~~~ 50 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH-P----HFQVTLMTAD 50 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC-S----SEEEEEEBCS
T ss_pred cEEEEECcCCHHHHHHHHHHHcC-C----CcEEEEEeCc
Confidence 6999999 799999999999876 3 2466655443
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.11 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.8
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
++||+|||+|.||+.++..|.++
T Consensus 4 ~irVgIiG~G~VG~~~~~~L~~~ 26 (325)
T 3ing_A 4 EIRIILMGTGNVGLNVLRIIDAS 26 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH
T ss_pred eEEEEEEcCcHHHHHHHHHHHhc
Confidence 47999999999999999999764
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.036 Score=56.90 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+++|+|||+|..|.++|..|++. | ++|+++++.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~-G-----~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQH-D-----VDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHT-T-----CEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHC-C-----CeEEEEcCCC
Confidence 36899999999999999999999 8 8999999875
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.051 Score=49.37 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
|||.|.|+ |.+|.+++..|++. | ++|++++|+++..
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~ 37 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR-G-----HEVTAIVRNAGKI 37 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCSHHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhC-C-----CEEEEEEcCchhh
Confidence 79999996 99999999999998 7 8999999998644
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.16 Score=50.66 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=20.7
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
++||+|||+|.||..++..+.++
T Consensus 6 ~irvgIiG~G~VG~~~~~~l~~~ 28 (331)
T 3c8m_A 6 TINLSIFGLGNVGLNLLRIIRSF 28 (331)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH
T ss_pred EEeEEEEecCHHHHHHHHHHHhC
Confidence 47999999999999999999765
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.054 Score=54.08 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=31.3
Q ss_pred CCCceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 41 GDPLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 41 ~~~mkIaIIGaGam-GsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
-...+++|||+|.+ |..+|..|... | ..|++.+|+..
T Consensus 175 l~gk~vvVIG~G~iVG~~~A~~L~~~-g-----AtVtv~nR~~~ 212 (320)
T 1edz_A 175 LYGKKCIVINRSEIVGRPLAALLAND-G-----ATVYSVDVNNI 212 (320)
T ss_dssp TTTCEEEEECCCTTTHHHHHHHHHTT-S-----CEEEEECSSEE
T ss_pred CCCCEEEEECCCcchHHHHHHHHHHC-C-----CEEEEEeCchH
Confidence 34579999999976 99999999987 6 78999998853
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.097 Score=53.46 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=29.0
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+.++|+||+|+|...-.++.+.+.. . +..+|.++.-+
T Consensus 90 ~~~~~Dvvf~alp~~~s~~~~~~~~~---~---G~~VIDlSa~f 127 (381)
T 3hsk_A 90 NFLECDVVFSGLDADVAGDIEKSFVE---A---GLAVVSNAKNY 127 (381)
T ss_dssp TGGGCSEEEECCCHHHHHHHHHHHHH---T---TCEEEECCSTT
T ss_pred hcccCCEEEECCChhHHHHHHHHHHh---C---CCEEEEcCCcc
Confidence 35789999999999988888777643 3 56788877544
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.083 Score=50.40 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=31.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|||.|.|+ |.+|.+++..|.+..| ++|++.+|+++...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g-----~~V~~~~R~~~~~~ 39 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHI-----DHFHIGVRNVEKVP 39 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTC-----TTEEEEESSGGGSC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCC-----CcEEEEECCHHHHH
Confidence 68999996 9999999999987523 89999999986443
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.18 Score=52.43 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=29.1
Q ss_pred EecCHHHHhc--CCCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 150 VVTNLQEAVW--DADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 150 ~t~dl~eal~--~aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.++|+++.+. +.|+|++++|+ ....+.+.+ .+.. +..|++.-|++
T Consensus 66 ~~~d~~ell~d~diDvVve~tp~~~~h~~~~~~---AL~a---GKhVvtenkal 113 (444)
T 3mtj_A 66 LTTNPFDVVDDPEIDIVVELIGGLEPARELVMQ---AIAN---GKHVVTANKHL 113 (444)
T ss_dssp EESCTHHHHTCTTCCEEEECCCSSTTHHHHHHH---HHHT---TCEEEECCHHH
T ss_pred ccCCHHHHhcCCCCCEEEEcCCCchHHHHHHHH---HHHc---CCEEEECCccc
Confidence 4677777775 47999999996 444444433 2333 56677776754
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.14 Score=53.86 Aligned_cols=53 Identities=19% Similarity=0.055 Sum_probs=41.3
Q ss_pred hHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
-+.-+|-+++..++. -.-++++|+|+|.+|.++|..|+.. | .+|.++++++..
T Consensus 248 ~~sl~dgi~r~tg~~-L~GKtVvVtGaGgIG~aiA~~Laa~-G-----A~Viv~D~~~~~ 300 (488)
T 3ond_A 248 RHSLPDGLMRATDVM-IAGKVAVVAGYGDVGKGCAAALKQA-G-----ARVIVTEIDPIC 300 (488)
T ss_dssp HHHHHHHHHHHHCCC-CTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHH
T ss_pred cHHHHHHHHHHcCCc-ccCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEcCCHHH
Confidence 344566777776652 2336899999999999999999988 8 799999998753
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.055 Score=57.94 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=38.0
Q ss_pred hHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 25 LEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...|-+.+.+|.. ....|+|||+|..|.++|..|++. | .+|.++.++.
T Consensus 18 ~~~r~~~~~~m~~----~~~DVvVIGgGi~G~~~A~~La~r-G-----~~V~LlE~~~ 65 (571)
T 2rgh_A 18 NKTRQDSIQKMQQ----EELDLLIIGGGITGAGVAVQAAAS-G-----IKTGLIEMQD 65 (571)
T ss_dssp HHHHHHHHHHHHH----SCBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred ccCHHHHHHhccc----CCCCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 4556666666542 236899999999999999999999 8 8999998754
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.074 Score=51.83 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=33.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.+|||.|.|+ |.+|++++..|.+. | ++|++.+|++...
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~~ 50 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAA-G-----HDLVLIHRPSSQI 50 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEECTTSCG
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEecChHhh
Confidence 3479999996 99999999999998 7 8999999987543
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.04 Score=55.20 Aligned_cols=59 Identities=20% Similarity=0.104 Sum_probs=40.5
Q ss_pred eeEeecchhHHHhHHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 17 LIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
-.+|++..-.-. +++++...|.. .+|+|.|.|+ |.+|..++..|.+. | ++|++.+|++.
T Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 64 (379)
T 2c5a_A 5 TTNGTDYGAYTY-KELEREQYWPS-ENLKISITGAGGFIASHIARRLKHE-G-----HYVIASDWKKN 64 (379)
T ss_dssp ----------CC-TTCCCCCSCTT-SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCC
T ss_pred ccCCcchhhhhH-HHHhccccccc-cCCeEEEECCccHHHHHHHHHHHHC-C-----CeEEEEECCCc
Confidence 345555444433 67777666654 5689999998 99999999999998 7 89999999864
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.061 Score=49.11 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=32.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
|||.|.|+ |.+|.+++..|++. | ++|++.+|+++..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~ 37 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR-G-----HEVLAVVRDPQKA 37 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC-C-----CEEEEEEeccccc
Confidence 78999998 99999999999998 7 8999999987643
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.061 Score=54.16 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=32.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..++|+|||+|..|.++|..|++. | .+|+++.+++.
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 60 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQN-G-----IDVSVYERDND 60 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 346899999999999999999998 7 89999998764
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.11 Score=50.25 Aligned_cols=46 Identities=17% Similarity=0.081 Sum_probs=32.1
Q ss_pred EEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 149 KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 149 ~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+++|+++.+.++|+|+.|.+++.+++...++ |.. +.-+++.+-|.
T Consensus 49 ~a~~d~d~lla~pD~VVe~A~~~av~e~~~~i---L~a---G~dvv~~S~ga 94 (253)
T 1j5p_A 49 VVRLDEFQVPSDVSTVVECASPEAVKEYSLQI---LKN---PVNYIIISTSA 94 (253)
T ss_dssp SEECSSCCCCTTCCEEEECSCHHHHHHHHHHH---TTS---SSEEEECCGGG
T ss_pred eeeCCHHHHhhCCCEEEECCCHHHHHHHHHHH---HHC---CCCEEEcChhh
Confidence 35677777677899999999888776654444 444 45677777663
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.11 Score=54.36 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=33.1
Q ss_pred cCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 152 TNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 152 ~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.++.++....|+++++||+....++++++... . -..++.++.|+.
T Consensus 56 ~sl~~lp~~~Dlavi~vp~~~~~~~v~e~~~~-G----i~~vv~~s~G~~ 100 (457)
T 2csu_A 56 KSVKDIPDEIDLAIIVVPKRFVKDTLIQCGEK-G----VKGVVIITAGFG 100 (457)
T ss_dssp SSTTSCSSCCSEEEECSCHHHHHHHHHHHHHH-T----CCEEEECCCSST
T ss_pred CCHHHcCCCCCEEEEecCHHHHHHHHHHHHHc-C----CCEEEEecCCCC
Confidence 33444445689999999999999999987654 1 135677888984
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.082 Score=51.24 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=31.3
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|+|.|.|+ |.+|.+++..|.+. | ++|++.+|++
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~ 38 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSF-S-----HPTFIYARPL 38 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHT-T-----CCEEEEECCC
T ss_pred cccEEEEEcCCchhHHHHHHHHHhC-C-----CcEEEEECCc
Confidence 3578999996 99999999999998 7 8999999986
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.065 Score=54.01 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..++|+|||+|..|.++|..|++. | ++|+++.+++.
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~-G-----~~V~v~E~~~~ 57 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQS-G-----IDCDVYEAVKE 57 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCCC
Confidence 347899999999999999999999 8 89999999764
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.069 Score=47.30 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++|+|||+|..|..+|..|++. | .+|+++++++.
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~-g-----~~v~lie~~~~ 35 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARA-G-----LKVLVLDGGRS 35 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECSCC
T ss_pred CeEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 5899999999999999999998 7 89999998763
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.08 Score=50.84 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=31.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+|+|.|+|+ |.+|.+++..|.+. | ++|++.+|+..
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~~ 39 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL-G-----HPTFLLVREST 39 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-C-----CCEEEEECCcc
Confidence 578999997 99999999999998 7 89999999853
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.051 Score=55.89 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+|+|||+|..|.+.|..|++. | .+|+++++++.
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~-G-----~~V~llEk~~~ 61 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKR-G-----RRVLVIDHARA 61 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 35899999999999999999998 7 89999998864
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.25 Score=49.60 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=25.9
Q ss_pred hcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 158 VWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 158 l~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
+.++|+||+|+|.....++.+... .. +..||+++.
T Consensus 75 ~~~vDvVf~atp~~~s~~~a~~~~---~a---G~~VId~s~ 109 (350)
T 2ep5_A 75 HKDVDVVLSALPNELAESIELELV---KN---GKIVVSNAS 109 (350)
T ss_dssp GTTCSEEEECCCHHHHHHHHHHHH---HT---TCEEEECSS
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HC---CCEEEECCc
Confidence 578999999999887777666554 33 456887764
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.15 Score=51.69 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=28.8
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+.++|+||+|+|...-.++.+.+. +. +..+|.++.-+
T Consensus 76 ~~~~vDvvf~a~p~~~s~~~a~~~~---~~---G~~vIDlSa~~ 113 (359)
T 4dpk_A 76 LMDDVDIIFSPLPQGAAGPVEEQFA---KE---GFPVISNSPDH 113 (359)
T ss_dssp GCTTCCEEEECCCTTTHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred HhcCCCEEEECCChHHHHHHHHHHH---HC---CCEEEEcCCCc
Confidence 3578999999999998888777664 33 56788777543
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.15 Score=51.69 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=28.8
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+.++|+||+|+|...-.++.+.+. +. +..+|.++.-+
T Consensus 76 ~~~~vDvvf~a~p~~~s~~~a~~~~---~~---G~~vIDlSa~~ 113 (359)
T 4dpl_A 76 LMDDVDIIFSPLPQGAAGPVEEQFA---KE---GFPVISNSPDH 113 (359)
T ss_dssp GCTTCCEEEECCCTTTHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred HhcCCCEEEECCChHHHHHHHHHHH---HC---CCEEEEcCCCc
Confidence 3578999999999998888777664 33 56788777543
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.15 Score=48.99 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=31.1
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|+|.|.|+ |.+|.+++..|.+. | ++|++.+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~ 38 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL-G-----HPTYVLFRPE 38 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCSC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 578999996 99999999999998 7 8999999985
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.67 Score=50.37 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|+.|+.++..|+.. |. ..++++|.+.
T Consensus 18 s~VlVVGaGGLGsevak~La~a-GV----G~ItlvD~D~ 51 (640)
T 1y8q_B 18 GRVLVVGAGGIGCELLKNLVLT-GF----SHIDLIDLDT 51 (640)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEECCB
T ss_pred CeEEEECcCHHHHHHHHHHHHc-CC----CeEEEecCCE
Confidence 5899999999999999999999 83 5899999875
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.22 Score=56.95 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=39.2
Q ss_pred HHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|.+.-.+++|...+. ..+|+|||+|..|+.+|..|+.. |. ..++++|.+.
T Consensus 7 ~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~a-GV----g~itlvD~D~ 61 (1015)
T 3cmm_A 7 ESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLA-GV----KSMTVFDPEP 61 (1015)
T ss_dssp HHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHH-CC----SEEEEECCSB
T ss_pred hHhccchHhhcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHc-CC----CeEEEecCCE
Confidence 45566545555543222 36899999999999999999999 83 5899999875
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.3 Score=49.10 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.7
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
|+||+|+|+|.+|..++..|..+
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~ 24 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQ 24 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHS
T ss_pred ceEEEEECCCHHHHHHHHHHHhC
Confidence 36999999999999999998765
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.065 Score=52.79 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=41.8
Q ss_pred Eeecchh--HHHhHHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 19 HHTNGSL--EERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 19 ~~~~~~~--~~~~~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||..||. +++...+.+.+.+ .+|+|.|.|+ |.+|.+++..|++. | ++|++.+|+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~---~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 62 (352)
T 1sb8_A 4 HHHHGSMGMMSRYEELRKELPA---QPKVWLITGVAGFIGSNLLETLLKL-D-----QKVVGLDNFAT 62 (352)
T ss_dssp --------CCCHHHHHHHHHHH---SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred cccccchHHHHHHHhhchhcCc---cCCeEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence 5556664 6777777777765 4589999998 99999999999998 7 89999999753
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.18 Score=51.17 Aligned_cols=38 Identities=16% Similarity=0.038 Sum_probs=28.4
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+.++|+||+|+|...-.+..+.+. +. +..+|.++.-+
T Consensus 61 ~~~~~Dvvf~a~~~~~s~~~a~~~~---~~---G~~vIDlSa~~ 98 (366)
T 3pwk_A 61 AFEGVDIALFSAGSSTSAKYAPYAV---KA---GVVVVDNTSYF 98 (366)
T ss_dssp TTTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred HhcCCCEEEECCChHhHHHHHHHHH---HC---CCEEEEcCCcc
Confidence 3678999999999888777777654 33 56788887544
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.06 Score=53.37 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=31.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...+|+|||+|..|.+.|..|++. | .+|++++++.
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~~-G-----~~V~llE~~~ 50 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAKE-N-----KNTALFESGT 50 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCC
Confidence 346899999999999999999998 8 8999999864
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.1 Score=50.06 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=31.3
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|+|.|.|+ |.+|.+++..|.+. | ++|++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA-G-----NPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH-T-----CCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 478999997 99999999999998 7 8999999986
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.081 Score=51.93 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=37.4
Q ss_pred HhHHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 28 RLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 28 ~~~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+++|....|.+ .+|+|.|.|+ |.+|+.++..|.+. | ++|++.+|+..
T Consensus 13 ~~~~~~~~~~~---~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 60 (351)
T 3ruf_A 13 RYEEITQQLIF---SPKTWLITGVAGFIGSNLLEKLLKL-N-----QVVIGLDNFST 60 (351)
T ss_dssp HHHHHHHHHHH---SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred HHhhHHhhCCC---CCCeEEEECCCcHHHHHHHHHHHHC-C-----CEEEEEeCCCC
Confidence 44555555544 4579999996 99999999999998 7 89999999764
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.19 Score=52.66 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=30.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+||.|||+|.+|++++..++++ ..+.. .+|++.+.+..
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~-~dv~~-~~I~vaD~~~~ 51 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEK-FDIKP-SQVTIIAAEGT 51 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHH-BCCCG-GGEEEEESSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhC-CCCce-eEEEEeccchh
Confidence 47899999999999999999998 32110 26888877654
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.092 Score=50.49 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=31.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||.|.|+ |-+|+.++..|.++ | |+|+..+|++.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~-G-----~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNAR-G-----HEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCC
Confidence 89999998 99999999999998 8 99999999864
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.073 Score=52.28 Aligned_cols=34 Identities=26% Similarity=0.558 Sum_probs=30.5
Q ss_pred CceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~---~~G~~~~~~~V~l~~r~~ 82 (465)
|++|+|||+|..|.+.|..|++ . | ++|++++++.
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~-G-----~~V~v~Ek~~ 37 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSG-P-----LYLAVWDKAD 37 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-C-C-----EEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccC-C-----ceEEEEECCC
Confidence 3689999999999999999999 7 7 8999998764
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.11 Score=51.29 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...|+|||+|.+|.+.|..|++. | .+|+++++..
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~-G-----~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARK-G-----YSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CEEEEEeccC
Confidence 46899999999999999999998 7 8999999753
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.086 Score=55.36 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=32.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..++|+|||+|..|.++|..|++. | .+|.++.+.+.
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~-G-----~~v~vlE~~~~ 45 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLA-G-----VEVVVLERLVE 45 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 346899999999999999999999 8 89999998764
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=92.86 E-value=0.2 Score=48.54 Aligned_cols=65 Identities=18% Similarity=0.048 Sum_probs=46.0
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+|-++.+|-...--+.-|++.- . +-..+++.|+|+|.+|.++|..|++. + +|++++|+.+.++.
T Consensus 101 ~~g~l~g~nTd~~G~~~~L~~~~-~-~l~~k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~ 165 (287)
T 1nvt_A 101 EDGKAIGYNTDGIGARMALEEEI-G-RVKDKNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEA 165 (287)
T ss_dssp ETTEEEEECCHHHHHHHHHHHHH-C-CCCSCEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHH
T ss_pred eCCEEEEecCCHHHHHHHHHHhC-C-CcCCCEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHH
Confidence 46766677766555555554421 1 12346899999999999999999876 4 89999998765543
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.15 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~ 65 (465)
+++||+|||+|.||+.++..+.+.
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~ 26 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAM 26 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHC
T ss_pred ceEEEEEEecCHHHHHHHHHHHhc
Confidence 458999999999999999999875
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.3 Score=48.86 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=25.4
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~ 79 (465)
+|||+|+| .|.+|..+...|.++ + | +..++..+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~-~-~-p~~elv~i~ 37 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQER-E-F-PVDELFLLA 37 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT-T-C-CEEEEEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcC-C-C-CCEEEEEEE
Confidence 58999999 899999999998876 2 1 114555554
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.11 Score=53.31 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.-...||+|+|+|+-|+++|..+... |. .+|+++|++.
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~-Ga----~~I~v~D~~G 222 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAA-GA----TKVTVVDKFG 222 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEETTE
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHc-CC----CeEEEEECCC
Confidence 44457999999999999999999987 82 3899999974
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.11 Score=52.56 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|+|+|||+|..|.+.|..|++. | ++|+++.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~-G-----~~V~vlE~~~ 33 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARN-G-----HEIIVLEKSA 33 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 6899999999999999999999 8 8999998865
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.1 Score=47.76 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=32.2
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
|||.|.| +|.+|.+++..|++. | ++|++.+|+++..
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~-g-----~~V~~~~R~~~~~ 37 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT-D-----YQIYAGARKVEQV 37 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS-S-----CEEEEEESSGGGS
T ss_pred CeEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCccch
Confidence 6999999 699999999999988 7 8999999997543
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.31 Score=48.23 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.++||.|||.|..|.+ +|..|.+. | ++|+++|+++
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~-G-----~~V~~~D~~~ 38 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEA-G-----FEVSGCDAKM 38 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhC-C-----CEEEEEcCCC
Confidence 4689999999999995 89999888 8 9999999875
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=92.35 E-value=0.18 Score=49.22 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=27.7
Q ss_pred CCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
.-++++|||.|. +|..+|..|... | ..|++..+
T Consensus 149 ~Gk~vvVvG~s~iVG~plA~lL~~~-g-----AtVtv~~~ 182 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRPLSMMLLNR-N-----YTVSVCHS 182 (276)
T ss_dssp CSCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECT
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHC-C-----CeEEEEeC
Confidence 347999999885 899999999988 6 78988854
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.1 Score=51.26 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=30.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
-|+|||+|.-|++.|..|+++ | ++|+++.+.++
T Consensus 6 DViIVGaGpaGl~~A~~La~~-G-----~~V~v~Er~~~ 38 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKY-G-----LKTLMIEKRPE 38 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 499999999999999999999 8 89999998753
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.16 Score=45.41 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=32.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
|+|.|.|+ |.+|.+++..|.+. | ++|++++|+++.
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~-g-----~~V~~~~r~~~~ 39 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA-G-----YEVTVLVRDSSR 39 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCGGG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC-C-----CeEEEEEeChhh
Confidence 79999998 99999999999998 7 899999998753
|
| >2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 | Back alignment and structure |
|---|
Probab=92.25 E-value=0.23 Score=55.31 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|||+|..|+.++..|++. |. .+++++|.+.
T Consensus 412 ~~vlvvG~GglG~~~~~~L~~~-Gv----g~i~l~D~d~ 445 (805)
T 2nvu_B 412 CKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDT 445 (805)
T ss_dssp CCEEEECCSSHHHHHHHHHHTT-TC----CEEEEEECCB
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CC----CcEEEECCCe
Confidence 5899999999999999999998 83 5899999875
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.14 Score=48.87 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=30.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
+++|+|||+|.-|.+.|..|++. | ++|++++++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~ 47 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARY-M-----LKTLVIGET 47 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred ccCEEEECccHHHHHHHHHHHHC-C-----CcEEEEecc
Confidence 46899999999999999999998 7 899999986
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.15 Score=51.27 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=31.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++|+|||+|..|.++|..|++. | .+|+++.+.+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDA-G-----VDVDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCCC
Confidence 46899999999999999999998 8 89999998764
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.13 Score=51.06 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.++|+|||+|..|.+.|..|++. | ++|++++++.
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~~-G-----~~V~vie~~~ 36 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAKQ-G-----VKTLLVDAFD 36 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCC
Confidence 35899999999999999999998 7 8999998864
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=92.09 E-value=0.13 Score=51.75 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|+|+|||+|..|.+.|..|+++ | ++|+++.++.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~-G-----~~V~vlE~~~ 33 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKA-G-----HEVEVFERLP 33 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CceEEEeCCC
Confidence 6899999999999999999999 8 8999998865
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.15 Score=48.22 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=30.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+.+|+|||+|.-|.+.|..|++. | ++|+++++++
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 35 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRA-R-----KNILLVDAGE 35 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCC
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 36899999999999999999998 7 8999999753
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=0.13 Score=51.27 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=34.1
Q ss_pred hHHHhHHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 25 LEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+--|-+-+.+.|......+|+|.|.|+ |.+|.+++..|.+. | .++|++++|+..
T Consensus 14 ~~~~~~~m~~~~~~~~~~~~~ilVtGatG~iG~~l~~~L~~~-g----~~~V~~~~r~~~ 68 (377)
T 2q1s_A 14 LVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLEL-G----VNQVHVVDNLLS 68 (377)
T ss_dssp ------------CCGGGTTCEEEEETTTSHHHHHHHHHHHHT-T----CSEEEEECCCTT
T ss_pred cccccccCCCCCChHHhCCCEEEEECCccHHHHHHHHHHHHc-C----CceEEEEECCCC
Confidence 444555565655544445689999996 99999999999988 5 168999998764
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.13 Score=50.11 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=30.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|..|.+.|..|++. | ++|+++++++
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~-G-----~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAG-G-----HEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEeCCC
Confidence 5899999999999999999998 8 8999999874
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.27 Score=48.16 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=27.2
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 43 ~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
-++++|||.|. +|..+|..|... | ..|++..+
T Consensus 160 Gk~vvVvGrs~iVG~p~A~lL~~~-g-----AtVtv~h~ 192 (285)
T 3p2o_A 160 GKDAVIIGASNIVGRPMATMLLNA-G-----ATVSVCHI 192 (285)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECT
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-C-----CeEEEEeC
Confidence 47999999887 699999999988 6 78888754
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=91.98 E-value=0.15 Score=53.94 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.1
Q ss_pred CCceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~---~~G~~~~~~~V~l~~r~~ 82 (465)
..++|+|||+|..|.+.|..|++ . | .+|+|+.+.+
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~-G-----~~V~liE~~~ 61 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQG-T-----ADITLLQAPD 61 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTT-S-----SEEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCC-C-----CcEEEEeCCC
Confidence 35689999999999999999999 7 6 8999999864
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.15 Score=51.65 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~ 82 (465)
...|+|||+|..|.+.|..|++. | . +|+++.++.
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~-G-----~~~V~vlE~~~ 40 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARR-G-----YTNVTVLDPYP 40 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-C-----CCcEEEEeCCC
Confidence 35799999999999999999999 8 7 899998865
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.46 Score=46.54 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=27.3
Q ss_pred CCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
.-++++|||.|. +|..+|..|... | ..|++..+
T Consensus 160 ~Gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs 193 (285)
T 3l07_A 160 EGAYAVVVGASNVVGKPVSQLLLNA-K-----ATVTTCHR 193 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECT
T ss_pred CCCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeC
Confidence 347899999887 799999999988 6 68887754
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.12 Score=49.92 Aligned_cols=35 Identities=9% Similarity=0.061 Sum_probs=31.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++++|+|||+|.-|.+.|..|++. | ++|+++++.+
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~vie~~~ 55 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARA-E-----IKPILYEGMM 55 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT-T-----CCCEEECCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEecCC
Confidence 457899999999999999999998 7 8999999854
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.12 Score=50.95 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|..|.+.|..|++. | .+|++++++.
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~-G-----~~V~vle~~~ 35 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRA-G-----LNVLMTDAHM 35 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 5799999999999999999999 8 8999999864
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.12 Score=53.51 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|++|+|||+|--|.+-|..|+++ | ++|+++.++.
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~-G-----~~V~VlEa~~ 34 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAA-G-----IPVLLLEQRD 34 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHT-T-----CCEEEECCC-
T ss_pred CCCEEEECCcHHHHHHHHHHHHC-C-----CcEEEEccCC
Confidence 57899999999999999999999 8 8999998764
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.27 Score=47.56 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=33.0
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+++.|+| +|.+|.+++..|++. | .+|++++|+.+..+
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~-G-----~~V~i~~R~~~~~~ 157 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGE-G-----AEVVLCGRKLDKAQ 157 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-c-----CEEEEEECCHHHHH
Confidence 36899999 899999999999998 7 78999999876544
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=0.16 Score=51.26 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~---~~G~~~~~~~V~l~~r~~~ 83 (465)
|++|+|||+|.-|.+.|..|++ . | ++|+++++++.
T Consensus 1 m~~VvIIGgG~aGl~aA~~L~~~~~~-g-----~~V~vie~~~~ 38 (409)
T 3h8l_A 1 MTKVLVLGGRFGALTAAYTLKRLVGS-K-----ADVKVINKSRF 38 (409)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHGG-G-----SEEEEEESSSE
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCC-C-----CeEEEEeCCCC
Confidence 4689999999999999999998 6 5 89999998763
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=91.60 E-value=0.41 Score=48.10 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=28.6
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+.++|+||+|+|....++..+.+. +. +..+|.++.-+
T Consensus 60 ~~~~~Dvvf~a~~~~~s~~~a~~~~---~~---G~~vID~Sa~~ 97 (344)
T 3tz6_A 60 DPSGLDIALFSAGSAMSKVQAPRFA---AA---GVTVIDNSSAW 97 (344)
T ss_dssp CCTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECSSTT
T ss_pred HhccCCEEEECCChHHHHHHHHHHH---hC---CCEEEECCCcc
Confidence 3578999999999988887777664 33 56788877543
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=91.60 E-value=0.22 Score=49.28 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=32.7
Q ss_pred EeecchhHHHhHHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 19 HHTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
||.-|.+++--..... -.+|||.|.|+ |.+|+.++..|.+..| ++|++++|+.+..
T Consensus 6 ~~~~~~~~~~~~~~~~------m~~~~vlVtGatG~iG~~l~~~L~~~~g-----~~V~~~~r~~~~~ 62 (372)
T 3slg_A 6 HHHMGTLEAQTQGPGS------MKAKKVLILGVNGFIGHHLSKRILETTD-----WEVFGMDMQTDRL 62 (372)
T ss_dssp -----------------------CCCEEEEESCSSHHHHHHHHHHHHHSS-----CEEEEEESCCTTT
T ss_pred cccccchhhhhcCCcc------cCCCEEEEECCCChHHHHHHHHHHhCCC-----CEEEEEeCChhhh
Confidence 4556666654333222 24579999995 9999999999988623 8999999987544
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=91.55 E-value=0.23 Score=49.09 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=28.2
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
-++++|||.|. +|..+|..|... | .+|++..+.
T Consensus 165 Gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~~~~ 198 (300)
T 4a26_A 165 GKRAVVLGRSNIVGAPVAALLMKE-N-----ATVTIVHSG 198 (300)
T ss_dssp TCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECTT
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-C-----CeEEEEeCC
Confidence 47999999877 799999999988 6 789988763
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.38 Score=47.45 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=27.8
Q ss_pred CCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
..++++|||+|. +|..+|..|... | ..|++..+
T Consensus 164 ~gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs 197 (301)
T 1a4i_A 164 AGRHAVVVGRSKIVGAPMHDLLLWN-N-----ATVTTCHS 197 (301)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHT-T-----CEEEEECT
T ss_pred CCCEEEEECCCchHHHHHHHHHHhC-C-----CeEEEEEC
Confidence 457999999996 799999999987 6 78888753
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.17 Score=51.88 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~--~V~l~~r~~ 82 (465)
..++|+|||+|..|.+.|..|++. | . +|+++.+++
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~-G-----~~~~V~v~E~~~ 41 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAE-K-----AFDQVTLFERRG 41 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTT-T-----CCSEEEEECSSS
T ss_pred CCCEEEEECccHHHHHHHHHHHhc-C-----CCCCeEEEecCC
Confidence 347899999999999999999998 7 6 899999875
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.36 E-value=0.17 Score=50.16 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+|+|||+|..|.+.|..|++. | ++|++++++.
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~-G-----~~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKR-G-----EEVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 35799999999999999999998 7 8999999864
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.14 Score=54.35 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=31.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+|+|||+|..|.++|..|++. | .+|+++++.+.
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~-G-----~~V~vlEr~~~ 60 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHR-Q-----VGHLVVEQTDG 60 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 35799999999999999999998 8 89999998764
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=91.32 E-value=0.45 Score=47.57 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=20.4
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~ 65 (465)
+|||+|+| .|.+|..+...|.++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~ 29 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDER 29 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC
Confidence 47999999 699999999999865
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.82 Score=38.73 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=26.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEE-EecC
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRP 81 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l-~~r~ 81 (465)
+..++.|+|+|..|..++..+.++.| ++|.. ++.+
T Consensus 3 ~~~~vlIiGaG~~g~~l~~~l~~~~g-----~~vvg~~d~~ 38 (141)
T 3nkl_A 3 AKKKVLIYGAGSAGLQLANMLRQGKE-----FHPIAFIDDD 38 (141)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHSSS-----EEEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-----cEEEEEEECC
Confidence 45689999999999999999976523 66554 4443
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=91.26 E-value=0.17 Score=50.57 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|+|||+|..|.++|..|++. | ++|+++.+.+.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~-G-----~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 4799999999999999999999 8 89999998764
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.25 E-value=0.16 Score=52.06 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~--~V~l~~r~~ 82 (465)
+++|+|||+|..|.+.|..|++. | + +|+++..++
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~-G-----~~~~V~vlEa~~ 37 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRA-P-----CPPKVVLVESSE 37 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTS-S-----SCCEEEEECSSS
T ss_pred CceEEEECCcHHHHHHHHHHHhC-C-----CCCcEEEEeCCC
Confidence 46899999999999999999998 7 7 999998754
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.13 E-value=0.23 Score=47.34 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=32.1
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..+
T Consensus 32 ~k~vlVTGasggIG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 70 (279)
T 1xg5_A 32 DRLALVTGASGGIGAAVARALVQQ-G-----LKVVGCARTVGNIE 70 (279)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEECChHHHH
Confidence 357889986 89999999999998 8 89999999876443
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.2 Score=49.84 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=31.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++|+|||+|..|.++|..|++. | .+|+++++++.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~-G-----~~v~viE~~~~ 45 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQN-G-----WDVRLHEKSSE 45 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEecCCC
Confidence 36899999999999999999998 7 89999998764
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=91.07 E-value=0.32 Score=47.72 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=27.8
Q ss_pred CCceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
..++++|||+|. +|..+|..|... | ..|++..+
T Consensus 158 ~gk~vvVIG~s~iVG~p~A~lL~~~-g-----AtVtv~hs 191 (288)
T 1b0a_A 158 FGLNAVVIGASNIVGRPMSMELLLA-G-----CTTTVTHR 191 (288)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHTT-T-----CEEEEECS
T ss_pred CCCEEEEECCChHHHHHHHHHHHHC-C-----CeEEEEeC
Confidence 457999999996 699999999987 6 78888754
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.02 E-value=0.41 Score=50.25 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=32.3
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+|||.|.|+ |.+|+.++..|.+. | ++|+..+|++.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~-G-----~~V~~l~R~~~ 182 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTG-G-----HEVIQLVRKEP 182 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESSSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCC
Confidence 789999995 99999999999998 7 89999999875
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=90.99 E-value=0.2 Score=48.53 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=30.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
+.+|+|||+|.-|.+.|..|++. | ++|++++++
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~ 40 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRA-Q-----LSTLILEKG 40 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred cCCEEEECCCHHHHHHHHHHHHc-C-----CcEEEEeCC
Confidence 35799999999999999999998 7 899999987
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=90.99 E-value=0.32 Score=48.69 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=21.0
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
++||+|+|+|.+|..++..+.++
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~ 25 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNS 25 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH
T ss_pred ceEEEEEccCHHHHHHHHHHHcC
Confidence 36999999999999999999876
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.34 Score=47.46 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=26.8
Q ss_pred CceEEEECccH-HHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 43 PLRIVGVGAGA-WGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 43 ~mkIaIIGaGa-mGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
-++++|||.|. .|..+|..|... | ..|++..+
T Consensus 161 Gk~vvVvGrs~iVG~plA~lL~~~-g-----AtVtv~hs 193 (286)
T 4a5o_A 161 GMDAVVVGASNIVGRPMALELLLG-G-----CTVTVTHR 193 (286)
T ss_dssp TCEEEEECTTSTTHHHHHHHHHHT-T-----CEEEEECT
T ss_pred CCEEEEECCCchhHHHHHHHHHHC-C-----CeEEEEeC
Confidence 47999999876 899999999988 6 78888744
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.96 E-value=0.44 Score=54.53 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=42.9
Q ss_pred HHHhHHHhhhhcCCCCC---CceEEEECccHHHHHHHHHHHHhcCC-CCCCeeEEEEecCc
Q 012349 26 EERLDELRRLMGKAEGD---PLRIVGVGAGAWGSVFTAMLQDSYGY-LRDKVLIRIWRRPG 82 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~---~mkIaIIGaGamGsalA~~La~~~G~-~~~~~~V~l~~r~~ 82 (465)
.+|.+...+++|...+. ..||+|||+|+.|+.++..|+.. |. ..++.+++++|.+.
T Consensus 405 ~~Ry~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~-Gv~~g~~G~i~lvD~D~ 464 (1015)
T 3cmm_A 405 NSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALL-GLGSGSDGYIVVTDNDS 464 (1015)
T ss_dssp SSTTHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHH-TTTCSTTCEEEEECCCB
T ss_pred hhhhhhHHHhcCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHc-CcCcCCCCeEEEEeCCE
Confidence 46888888888765443 36899999999999999999999 83 11113799999875
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=90.94 E-value=0.29 Score=51.29 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=32.6
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
....+|+|||+|..|.++|..|++. | .+|+++.+++.
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~-G-----~~V~liEk~~~ 126 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALL-G-----ARVVLVEKRIK 126 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCSS
T ss_pred cCCCCEEEECccHHHHHHHHHHHHC-C-----CeEEEEEeccc
Confidence 3457899999999999999999998 8 89999998753
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=0.2 Score=49.12 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCC-CCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYL-RDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~-~~~~~V~l~~r~~ 82 (465)
|+|+|||+|..|.+.|..|+++ |.- .++.+|++++++.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCC
Confidence 6899999999999999999998 400 0016899999874
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.2 Score=50.07 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||+|..|.+.|..|++. | .+|+++++..
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~-G-----~~V~vlE~~~ 37 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAER-G-----HRVLVLERHT 37 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 5799999999999999999999 8 8999999865
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=1.2 Score=44.92 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=29.2
Q ss_pred CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+.++ +.++|+||.|+|.....+..+.+.. .+. +.+||+++.-+
T Consensus 59 ~~~~-~~~~DvVf~a~g~~~s~~~a~~~~~---~G~-k~vVID~ss~~ 101 (367)
T 1t4b_A 59 DLEA-LKALDIIVTCQGGDYTNEIYPKLRE---SGW-QGYWIDAASSL 101 (367)
T ss_dssp CHHH-HHTCSEEEECSCHHHHHHHHHHHHH---TTC-CCEEEECSSTT
T ss_pred ChHH-hcCCCEEEECCCchhHHHHHHHHHH---CCC-CEEEEcCChhh
Confidence 4444 5789999999998888777776643 210 23788877443
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=90.80 E-value=1.4 Score=44.77 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=29.0
Q ss_pred CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+.+ .+.++|+||+|+|.....+..+.+.. .+. +..||+++.-
T Consensus 58 ~~~-~~~~~Dvvf~a~~~~~s~~~~~~~~~---~G~-k~~VID~ss~ 99 (370)
T 3pzr_A 58 DIE-SLKQLDAVITCQGGSYTEKVYPALRQ---AGW-KGYWIDAAST 99 (370)
T ss_dssp CHH-HHTTCSEEEECSCHHHHHHHHHHHHH---TTC-CCEEEECSST
T ss_pred Chh-HhccCCEEEECCChHHHHHHHHHHHH---CCC-CEEEEeCCch
Confidence 443 36899999999999888887776543 210 2478887743
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=0.32 Score=51.19 Aligned_cols=35 Identities=26% Similarity=0.160 Sum_probs=31.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..++|+|||+|.-|.+.|..|++. | ++|+++++++
T Consensus 42 ~~~dVvIIGgG~aGl~aA~~l~~~-G-----~~V~liE~~~ 76 (523)
T 1mo9_A 42 REYDAIFIGGGAAGRFGSAYLRAM-G-----GRQLIVDRWP 76 (523)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence 347899999999999999999998 7 8999999886
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.23 Score=50.14 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|+|||+|..|.+.|..|++. | ++|+++.+++.
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~-g-----~~v~v~E~~~~ 37 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEK-G-----HQVHIIDQRDH 37 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEEecCC
Confidence 7999999999999999999988 7 89999998753
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.18 Score=50.69 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|..|.+.|..|++. | .+|+++.+++
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~-G-----~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKS-G-----FKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 6899999999999999999998 7 8999999874
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.26 Score=48.24 Aligned_cols=36 Identities=28% Similarity=0.211 Sum_probs=31.6
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|+|.|.|+ |.+|..++..|.+. | ++|++.+|+..
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 62 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMD-G-----HEVTVVDNFFT 62 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHC-C-----CEEEEEeCCCc
Confidence 5689999998 99999999999998 7 89999998753
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.2 Score=52.23 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=29.5
Q ss_pred CceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~---~~G~~~~~~~V~l~~r~~ 82 (465)
+++|+|||+|..|.+.|..|++ . | .+|+|+.+.+
T Consensus 2 ~~dVvIVGgG~aGl~~A~~La~~~~~-G-----~~V~lvE~~~ 38 (511)
T 2weu_A 2 IRSVVIVGGGTAGWMTASYLKAAFDD-R-----IDVTLVESGN 38 (511)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHGG-G-----SEEEEEEC--
T ss_pred cceEEEECCCHHHHHHHHHHHhhcCC-C-----CEEEEEecCC
Confidence 3689999999999999999999 8 7 8999998864
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.36 E-value=0.22 Score=49.83 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=31.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++|+|||+|..|.++|..|++. | .+|+++++++.
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~-G-----~~V~viE~~~~ 40 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQ-G-----HRVVVVEQARR 40 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCCCC
Confidence 36899999999999999999998 7 89999998754
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=90.34 E-value=0.22 Score=51.25 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
...|+|||+|..|.+.|..|++. | .+|+++++.+.
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~-G-----~~V~llEk~~~ 60 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEE-G-----ANVLLLDKGNK 60 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 35799999999999999999998 7 89999998763
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.17 Score=53.20 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||+|..|.+.|..|+++ | ++|.++.+++
T Consensus 21 ~dv~iiG~G~~g~~~a~~l~~~-g-----~~v~~~e~~~ 53 (475)
T 3p1w_A 21 YDVIILGTGLKECILSGLLSHY-G-----KKILVLDRNP 53 (475)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeccC
Confidence 5899999999999999999999 8 8999999876
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=90.23 E-value=0.25 Score=51.75 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=32.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..++|+|||+|..|.++|..|++. | .+|+++++.+.
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~-G-----~~v~vlE~~~~ 46 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLG-G-----VDVMVLEQLPQ 46 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 447899999999999999999999 8 89999998764
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=90.22 E-value=0.26 Score=49.65 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~ 83 (465)
++|+|||+|..|.++|..|++. | .+ |+++.+++.
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~-G-----~~~v~v~E~~~~ 39 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQA-G-----IGKVTLLESSSE 39 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CSEEEEEESSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CCeEEEEECCCC
Confidence 6899999999999999999998 7 88 999998764
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.55 Score=49.67 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=45.4
Q ss_pred cccccccccCCCeeEeecchhHHHhHHHhhhhc-----------CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCe
Q 012349 5 NEVVNDSLSSNGLIHHTNGSLEERLDELRRLMG-----------KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV 73 (465)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~ 73 (465)
|-++++. .+|-.+.+|-...--..-++.-.. ...-..+++.|+|+|.+|.+++..|++. | .
T Consensus 317 Nti~~~~--~~gk~~g~nTD~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~aia~~L~~~-G-----~ 388 (523)
T 2o7s_A 317 NTILRRK--SDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEK-G-----A 388 (523)
T ss_dssp SEEEECT--TTCCEEEECCHHHHHHHHHHHHC-------------------CEEEECCSHHHHHHHHHHHHH-C-----C
T ss_pred eEEEEec--CCCeEEEEcCCHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHHHHHHHHHHHHC-C-----C
Confidence 4455432 366666666554433334433211 0111235799999999999999999999 8 7
Q ss_pred eEEEEecCchhhh
Q 012349 74 LIRIWRRPGRSVD 86 (465)
Q Consensus 74 ~V~l~~r~~~~~~ 86 (465)
+|++++|+.+.++
T Consensus 389 ~V~i~~R~~~~a~ 401 (523)
T 2o7s_A 389 KVVIANRTYERAL 401 (523)
T ss_dssp -CEEEESSHHHHH
T ss_pred EEEEEECCHHHHH
Confidence 8999999876544
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=90.15 E-value=0.23 Score=53.37 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|..|.+.|..|++. | .+|+++.+++
T Consensus 24 ~DVvIVGgG~AGl~aA~~Lar~-G-----~~V~LiEr~~ 56 (591)
T 3i3l_A 24 SKVAIIGGGPAGSVAGLTLHKL-G-----HDVTIYERSA 56 (591)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHcC-C-----CCEEEEcCCC
Confidence 6899999999999999999998 7 8999999873
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=90.10 E-value=0.68 Score=46.64 Aligned_cols=40 Identities=18% Similarity=0.354 Sum_probs=29.7
Q ss_pred CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
|.++...++|++|+|+|...-.++.+++ . +..||.++.-+
T Consensus 71 ~~~~~~~~~Dvvf~alp~~~s~~~~~~~-----~---g~~VIDlSsdf 110 (351)
T 1vkn_A 71 DPEKVSKNCDVLFTALPAGASYDLVREL-----K---GVKIIDLGADF 110 (351)
T ss_dssp CHHHHHHHCSEEEECCSTTHHHHHHTTC-----C---SCEEEESSSTT
T ss_pred CHHHhhcCCCEEEECCCcHHHHHHHHHh-----C---CCEEEECChhh
Confidence 4444347799999999999888777665 3 57888888554
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=90.03 E-value=0.28 Score=47.03 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=32.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++|+|.|.|+ |.+|+.++..|.+. | ++|++.+|+..
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 42 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVAS-G-----EEVTVLDDLRV 42 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT-T-----CCEEEECCCSS
T ss_pred CCCeEEEECCCChHHHHHHHHHHHC-C-----CEEEEEecCCc
Confidence 4589999998 99999999999998 7 89999999764
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=89.93 E-value=0.42 Score=46.39 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=32.8
Q ss_pred EeecchhHHHhHHHhhhhc-----------CCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 19 HHTNGSLEERLDELRRLMG-----------KAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
||.-|.||..+..-=+++- |.+-..++|.|.|+ |.+|.++|..|++. | .+|.+.+|+++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~l~~k~vlVTGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~ 79 (293)
T 3rih_A 6 HHHMGTLEAQTQGPGSMLVVESAEPAERKVMFDLSARSVLVTGGTKGIGRGIATVFARA-G-----ANVAVAARSPRELS 79 (293)
T ss_dssp ----------------------------CCTTCCTTCEEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESSGGGGH
T ss_pred ccccchhhhhhcCCceeeeecCCCCcccccccCCCCCEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 5666777766544222111 11112356778886 78999999999999 8 89999999986554
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=89.92 E-value=0.27 Score=46.75 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEE-EecC
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRI-WRRP 81 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l-~~r~ 81 (465)
.+++|+|||+|.-|.+.|..|++. | ++|++ ++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~li~e~~ 37 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRG-G-----LKNVVMFEKG 37 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHH-T-----CSCEEEECSS
T ss_pred CCceEEEECCCHHHHHHHHHHHHC-C-----CCeEEEEeCC
Confidence 457999999999999999999998 7 88999 8873
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=89.83 E-value=0.59 Score=48.32 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+||.|||.|..|.+.|..|.+. | ++|+++|+++.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~-G-----~~V~~~D~~~~ 43 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKL-G-----AIVTVNDGKPF 43 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHT-T-----CEEEEEESSCG
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC-C-----CEEEEEeCCcc
Confidence 347999999999999999999988 8 99999999763
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.28 Score=47.44 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+++|+|||+|.-|.+.|..|++. | ++|+++++++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 38 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGMR-G-----LSFRFVDPLP 38 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred cCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 46899999999999999999988 7 8999999875
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=89.81 E-value=0.21 Score=52.06 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=34.1
Q ss_pred EeecchhHHHhHH-Hhhhh--cCCCCCC-ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 19 HHTNGSLEERLDE-LRRLM--GKAEGDP-LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 19 ~~~~~~~~~~~~~-~~~~~--~~~~~~~-mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||..|+-+-+.-. +||.+ .|....| ++|+|||+|.-|.+.|..|++. |. ++.+|+++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~m~~~~m~~dvvIIGaG~aGl~aA~~l~~~-g~--~~~~V~lie~~~~ 72 (490)
T 2bc0_A 7 HHHHGMASMTGGQQMGRTLYDDDDKDRWGSKIVVVGANHAGTACIKTMLTN-YG--DANEIVVFDQNSN 72 (490)
T ss_dssp -----------CCCCSCCTTCCCCTTCCCCEEEEECCSHHHHHHHHHHHHH-HG--GGSEEEEECSSSC
T ss_pred ccccccccccchhhhccccccccchhccCCcEEEECCCHHHHHHHHHHHhc-CC--CCCeEEEEECCCC
Confidence 5667777766543 22221 1222223 6899999999999999999986 30 0168999998763
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=89.72 E-value=0.57 Score=48.35 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+++|+|||+|..|.+.|..|++. | ++|+++.++.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~-g-----~~v~vlE~~~ 66 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGA-G-----HQVTVLEASE 66 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHH-T-----CEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhC-C-----CeEEEEECCC
Confidence 357899999999999999999998 8 8999998764
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=89.65 E-value=0.28 Score=49.46 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++|+|||+|.-|.+.|..|++. | ++|+++.++.
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~-G-----~~V~vlE~~~ 34 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNA-G-----KKVLLLEGGE 34 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHc-C-----CeEEEEecCC
Confidence 6899999999999999999999 8 8999998754
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.32 Score=50.51 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=32.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..++|+|||+|.-|.+.|..|++. | ++|+++++.+.
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~-G-----~~V~v~e~~~~ 156 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAK-G-----YEVHVYDRYDR 156 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 457899999999999999999999 8 89999998753
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=89.58 E-value=0.28 Score=48.06 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~ 82 (465)
.++|+|||+|.-|.+.|..|++. | + +|+++++++
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~-g-----~~~v~lie~~~ 38 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDF-G-----ITDVIILEKGT 38 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCCEEEECSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHHc-C-----CCcEEEEecCC
Confidence 36899999999999999999998 7 7 899999875
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=89.45 E-value=1.3 Score=45.03 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=29.1
Q ss_pred CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+.+ .+.++|+||+|+|.....++++.+.. .+. +..||+++.-
T Consensus 62 ~~~-~~~~vDvvf~a~~~~~s~~~~~~~~~---~G~-k~~VID~ss~ 103 (377)
T 3uw3_A 62 SID-DLKKCDVIITCQGGDYTNDVFPKLRA---AGW-NGYWIDAASS 103 (377)
T ss_dssp CHH-HHHTCSEEEECSCHHHHHHHHHHHHH---TTC-CSEEEECSST
T ss_pred Chh-HhcCCCEEEECCChHHHHHHHHHHHH---CCC-CEEEEeCCcc
Confidence 443 36789999999999888887777643 210 1378888754
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.36 Score=50.80 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~---~~G~~~~~~~V~l~~r~~ 82 (465)
+.+|+|||+|..|.+.|..|++ . | .+|+|+.+.+
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~-G-----~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQ-Q-----ANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCS-S-----CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCC-C-----CEEEEECCCC
Confidence 4689999999999999999999 7 7 8999999854
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.54 Score=45.48 Aligned_cols=36 Identities=8% Similarity=-0.033 Sum_probs=31.2
Q ss_pred CceEEEECcc---HHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 43 PLRIVGVGAG---AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 43 ~mkIaIIGaG---amGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.+++.|.|++ .+|.++|..|++. | .+|.+.+|+++.
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~-G-----~~V~~~~r~~~~ 68 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQ-G-----AEVALTYLSETF 68 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHT-T-----CEEEEEESSGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHC-C-----CEEEEEeCChHH
Confidence 3578999986 8999999999999 8 899999998653
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.33 Score=47.40 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=30.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|+|.|.|+ |.+|++++..|.+. | ++|++++|++.
T Consensus 18 ~~~~vlVtGatG~iG~~l~~~L~~~-G-----~~V~~~~r~~~ 54 (347)
T 4id9_A 18 GSHMILVTGSAGRVGRAVVAALRTQ-G-----RTVRGFDLRPS 54 (347)
T ss_dssp ---CEEEETTTSHHHHHHHHHHHHT-T-----CCEEEEESSCC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhC-C-----CEEEEEeCCCC
Confidence 4589999998 99999999999998 7 89999999864
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.97 E-value=0.33 Score=50.44 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=30.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|.-|.+.|..|++. | ++|.++++++
T Consensus 26 ~dVvVIGgG~aGl~aA~~la~~-G-----~~V~liEk~~ 58 (491)
T 3urh_A 26 YDLIVIGSGPGGYVCAIKAAQL-G-----MKVAVVEKRS 58 (491)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHHC-C-----CeEEEEecCC
Confidence 4799999999999999999998 7 8999999754
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=88.89 E-value=0.45 Score=45.32 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=31.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+++.|.|+ |.+|.++|..|++. | ++|.+.+|+++..+
T Consensus 31 k~vlVTGas~GIG~aia~~l~~~-G-----~~Vi~~~r~~~~~~ 68 (281)
T 3ppi_A 31 ASAIVSGGAGGLGEATVRRLHAD-G-----LGVVIADLAAEKGK 68 (281)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHC-C-----CEEEEEeCChHHHH
Confidence 56888887 78999999999999 8 89999999876544
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=88.88 E-value=0.43 Score=45.93 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=31.0
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|||.|.|+ |.+|+.++..|.++ | ++|+..+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~ 36 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKND-G-----NTPIILTRSI 36 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEeCCC
Confidence 479999995 99999999999998 7 8999999984
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=88.83 E-value=0.3 Score=52.17 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|+|||+|..|.++|..|++. | .+|.++++.+.
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~-G-----~~V~VlEr~~~ 83 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAG-G-----VGALVLEKLVE 83 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHT-T-----CCEEEEBSCSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEcCCCC
Confidence 4699999999999999999999 8 89999998754
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=88.81 E-value=0.33 Score=46.57 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+.+|+|||+|.-|.+.|..|++. | ++|+++++++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 40 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMR-Q-----ASVKIIESLP 40 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred cceEEEECCCHHHHHHHHHHHHC-C-----CCEEEEEcCC
Confidence 35899999999999999999998 7 8999999875
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=88.78 E-value=0.34 Score=46.80 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|+|||+|.-|.+.|..|++. | ++|+++++++.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~-g-----~~v~vie~~~~ 37 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRS-G-----LSYVILDAEAS 37 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-S-----CCEEEECCSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEECCCC
Confidence 5899999999999999999998 7 89999998753
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=88.74 E-value=0.27 Score=51.63 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=31.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+++||+|||+|.-|...|..|.+. + ++|+|+++++.
T Consensus 41 ~KprVVIIGgG~AGl~~A~~L~~~-~-----~~VtLId~~~~ 76 (502)
T 4g6h_A 41 DKPNVLILGSGWGAISFLKHIDTK-K-----YNVSIISPRSY 76 (502)
T ss_dssp SSCEEEEECSSHHHHHHHHHSCTT-T-----CEEEEEESSSE
T ss_pred CCCCEEEECCcHHHHHHHHHhhhC-C-----CcEEEECCCCC
Confidence 457999999999999999999876 5 89999998753
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=88.72 E-value=0.41 Score=45.86 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
|||.|.|+ |.+|++++..|++. | ++|++.+|+++.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 36 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVEL-G-----YEVVVVDNLSSG 36 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECCCSSC
T ss_pred CEEEEECCCChHHHHHHHHHHhC-C-----CEEEEEeCCCCC
Confidence 68999998 99999999999998 7 899999997653
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=0.4 Score=50.94 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=39.2
Q ss_pred hhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 24 SLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
++.+-.+..++++.........|+|||+|..|.+.|..+++. | .+|.++.+.+
T Consensus 107 ~l~~a~~~~~~~~~~~~~~~~DVvVVGaG~aGl~aA~~la~~-G-----~~V~vlEk~~ 159 (571)
T 1y0p_A 107 ELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDS-G-----AKVILIEKEP 159 (571)
T ss_dssp GGGGGHHHHHHHHHSCCSEECSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred HHHHHHHHhhhhhccCCCCCCCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 344444455555543333346899999999999999999998 8 8999998865
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=88.47 E-value=0.28 Score=48.17 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=29.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.++|+|||+|..|.+.|..|+ . | .+|+++++++
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~-G-----~~V~vlE~~~ 41 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-A-H-----GRVVVLEREA 41 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-T-T-----SCEEEECSSS
T ss_pred cCCEEEECCcHHHHHHHHHHh-C-C-----CCEEEEECCC
Confidence 467999999999999999999 6 7 8999999874
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=88.47 E-value=0.4 Score=48.50 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=30.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCee--EEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL--IRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~--V~l~~r~~ 82 (465)
.+++|+|||+|.-|.+.|..|++. | ++ |+++++++
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~-g-----~~~~V~lie~~~ 44 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQN-G-----FEGRVLVIGREP 44 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHT-T-----CCSCEEEEESSS
T ss_pred CCCcEEEECChHHHHHHHHHHHcc-C-----cCCCEEEEecCC
Confidence 346899999999999999999998 7 55 99998865
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=0.23 Score=48.10 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=29.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
++|+|||+|..|.+.|..|++. | ++|+++++
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~-g-----~~v~lie~ 39 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARA-E-----LKPLLFEG 39 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCCEEECC
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEec
Confidence 6899999999999999999998 7 89999987
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=88.33 E-value=0.4 Score=50.34 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=30.5
Q ss_pred CceEEEECccHHHHHHHHHHHH------------hcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQD------------SYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~------------~~G~~~~~~~V~l~~r~~ 82 (465)
.++|+|||+|.-|.+.|..|++ . | .+|+|+.+++
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~-G-----~~V~liE~~~ 52 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSP-K-----LNITLIESPD 52 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSC-S-----CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCC-C-----CeEEEEeCCC
Confidence 4689999999999999999999 6 6 8999999854
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=88.32 E-value=0.67 Score=48.11 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=29.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEe----cC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWR----RP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~----r~ 81 (465)
..||+|+|+|..|.+++..|... |.- ..+|++++ |+
T Consensus 186 ~~rvlvlGAGgAg~aia~~L~~~-G~~--~~~I~vvd~~~~R~ 225 (439)
T 2dvm_A 186 EITLALFGAGAAGFATLRILTEA-GVK--PENVRVVELVNGKP 225 (439)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHT-TCC--GGGEEEEEEETTEE
T ss_pred CCEEEEECccHHHHHHHHHHHHc-CCC--cCeEEEEEccCCCc
Confidence 36899999999999999999988 710 02799999 87
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=88.30 E-value=0.47 Score=42.51 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++|||.|.|+ |.+|.+++..|+ . | ++|.+.+|+++
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~-g-----~~V~~~~r~~~ 37 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-K-K-----AEVITAGRHSG 37 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-T-T-----SEEEEEESSSS
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-C-C-----CeEEEEecCcc
Confidence 4579999996 899999999999 8 7 89999999863
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.30 E-value=0.46 Score=44.81 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=33.2
Q ss_pred CCceEEEECc-c-HHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGA-G-AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGa-G-amGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..++|.|.|+ | .+|.++|..|++. | ++|.+.+|+.+..+
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~-G-----~~V~~~~r~~~~~~ 61 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLE-G-----ADVVISDYHERRLG 61 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHC-C-----CEEEEecCCHHHHH
Confidence 3468999998 8 5999999999999 8 89999999976544
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=88.25 E-value=0.42 Score=46.90 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=31.0
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+|+|.|.|+ |.+|.+++..|.+. | ++|++.+|++
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~ 44 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDA-H-----RPTYILARPG 44 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHT-T-----CCEEEEECSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHC-C-----CCEEEEECCC
Confidence 478999998 99999999999998 7 8999999987
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=88.24 E-value=0.4 Score=45.79 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=29.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRP 81 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~ 81 (465)
++|+|||+|.-|.+.|..|++. | + +|.+++++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~-g-----~~~v~lie~~ 34 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRG-G-----VKNAVLFEKG 34 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CSSEEEECSS
T ss_pred ceEEEECccHHHHHHHHHHHHC-C-----CCcEEEEcCC
Confidence 5899999999999999999998 7 8 99999875
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=88.21 E-value=0.39 Score=46.38 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=30.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++|.|.|+ |.+|.+++..|.+. | ++|++.+|++.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~l~R~~~ 46 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL-G-----HPTYVFTRPNS 46 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT-T-----CCEEEEECTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHC-C-----CcEEEEECCCC
Confidence 58999996 99999999999998 7 89999999874
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.21 E-value=0.49 Score=45.66 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=30.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
||+|.|.|+ |.+|.+++..|.+. | ++|++.+|+..
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 36 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDE-G-----LSVVVVDNLQT 36 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC-C-----CEEEEEeCCCc
Confidence 479999986 99999999999998 7 89999998753
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=88.18 E-value=0.71 Score=43.54 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=33.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..+++.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~-G-----~~V~~~~r~~~~~~ 46 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEG-G-----AEVLLTGRNESNIA 46 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 3467889986 78999999999999 8 89999999976544
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=88.14 E-value=0.46 Score=47.38 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhc-CCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSY-GYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~-G~~~~~~~V~l~~r~~~ 83 (465)
|+|+|||+|..|.++|..|++.. | .+|+++.+++.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G-----~~V~v~E~~~~ 36 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPL-----WAIDIVEKNDE 36 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTT-----SEEEEECSSCT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCC-----CCEEEEECCCC
Confidence 58999999999999999999861 3 89999998764
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=88.09 E-value=0.57 Score=43.10 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=32.4
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCe--eEEEEecCchhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGRSV 85 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~--~V~l~~r~~~~~ 85 (465)
.|+|.|.|+ |.+|.+++..|++. | + +|++.+|+++..
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~-G-----~~~~V~~~~r~~~~~ 57 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQ-G-----LFSKVTLIGRRKLTF 57 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHH-T-----CCSEEEEEESSCCCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcC-C-----CCCEEEEEEcCCCCc
Confidence 368999995 99999999999999 7 7 999999987543
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=88.02 E-value=0.55 Score=43.32 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=30.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
++|.|.|+ |.+|.+++..|++. | ++|++.+|+++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 36 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARA-G-----HTVIGIDRGQA 36 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSSS
T ss_pred cEEEEeCCCcHHHHHHHHHHHhC-C-----CEEEEEeCChh
Confidence 57999997 99999999999998 7 89999999875
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=87.99 E-value=0.57 Score=48.18 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=30.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.++|+|||+|..|.+.|..|++. | ++|+++.++.
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~-g-----~~v~v~E~~~ 44 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKA-G-----YKVTVLEART 44 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeccC
Confidence 47899999999999999999998 7 8999998765
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.95 E-value=0.52 Score=45.59 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=31.8
Q ss_pred CCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 39 AEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 39 ~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
..+..|||.|.|+ |.+|.+++..|.+. | ++|++.+|++..
T Consensus 10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~~ 50 (335)
T 1rpn_A 10 HGSMTRSALVTGITGQDGAYLAKLLLEK-G-----YRVHGLVARRSS 50 (335)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCCSS
T ss_pred ccccCCeEEEECCCChHHHHHHHHHHHC-C-----CeEEEEeCCCcc
Confidence 4445689999997 99999999999998 7 899999998653
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=87.94 E-value=0.77 Score=46.59 Aligned_cols=34 Identities=35% Similarity=0.422 Sum_probs=31.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
..++|+|||+|.-|.+.|..|++. | ++|+++.++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~-G-----~~V~VlE~~ 76 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRA-G-----HDVTILEAN 76 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHT-S-----CEEEEECSC
T ss_pred CCceEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecc
Confidence 357999999999999999999998 7 899999877
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=0.43 Score=49.42 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=30.1
Q ss_pred ceEEEECccHHHHHHHHHHHH---hcCCCCCCee---EEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVL---IRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~---~~G~~~~~~~---V~l~~r~~ 82 (465)
++|+|||+|.-|.+.|..|++ . | .+ |+++++++
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~-G-----~~~~~V~v~E~~~ 41 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEK-G-----AEIPELVCFEKQA 41 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHT-T-----CCCCEEEEECSSS
T ss_pred CcEEEECccHHHHHHHHHHHhhhhc-C-----CCCCcEEEEEcCC
Confidence 689999999999999999998 7 7 77 99999875
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.92 E-value=0.8 Score=43.45 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=32.3
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..+
T Consensus 31 ~k~vlITGasggIG~~la~~L~~~-G-----~~V~~~~r~~~~~~ 69 (272)
T 1yb1_A 31 GEIVLITGAGHGIGRLTAYEFAKL-K-----SKLVLWDINKHGLE 69 (272)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-C-----CEEEEEEcCHHHHH
Confidence 367999986 89999999999999 8 89999999876443
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.81 E-value=0.49 Score=45.84 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=32.7
Q ss_pred CCCeeEeecchhHHHhHHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 14 SNGLIHHTNGSLEERLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|.---||..|.+....+ +|.+ ..+++.|.|+ |.+|.++|..|++. | ++|.+.+|+++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~----m~~l---~~k~vlVTGas~gIG~aia~~L~~~-G-----~~V~~~~r~~~~~~ 64 (297)
T 1xhl_A 4 SHHHHHHSSGLVPRGSH----MARF---SGKSVIITGSSNGIGRSAAVIFAKE-G-----AQVTITGRNEDRLE 64 (297)
T ss_dssp -----------------------CC---TTCEEEETTCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred ccccccccCCccccccc----ccCC---CCCEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 33344666666654433 2222 2357888886 78999999999999 8 89999999876543
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=87.55 E-value=2.8 Score=41.12 Aligned_cols=117 Identities=19% Similarity=0.203 Sum_probs=74.1
Q ss_pred CeEEecCHHHHhcCCCEEEEecCcch-HHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCC
Q 012349 147 PLKVVTNLQEAVWDADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPI 225 (465)
Q Consensus 147 ~i~~t~dl~eal~~aDiVIlaVps~~-l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~ 225 (465)
++++++|-.||++++|++|+-+|--. ...+++++.+++++ +.+|- .+=.+++- .+...+++ +++.
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpE---gAII~-nTCTipp~--------~ly~~le~-l~R~- 193 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPE---GAIVT-HACTIPTT--------KFAKIFKD-LGRE- 193 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCT---TCEEE-ECSSSCHH--------HHHHHHHH-TTCT-
T ss_pred CcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcC---CCEEe-cccCCCHH--------HHHHHHHH-hCcc-
Confidence 68899999999999999999999754 88999999999998 66543 33244432 12233443 5532
Q ss_pred ccEEEEeC-CchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEe-cCChHH
Q 012349 226 ENILYLGG-PNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD-NGDLVT 279 (465)
Q Consensus 226 ~~i~vlsG-P~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~-s~Di~g 279 (465)
.+.+.|. |.-.-+. .|+.....--.+++..+++.++-++.+-..|. ..|+++
T Consensus 194 -DvgIsS~HPaaVPgt-~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vPAdl~S 247 (358)
T 2b0j_A 194 -DLNITSYHPGCVPEM-KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPANLIG 247 (358)
T ss_dssp -TSEEEECBCSSCTTT-CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEEHHHHH
T ss_pred -cCCeeccCCCCCCCC-CCccccccccCCHHHHHHHHHHHHHhCCCeEecchhhcc
Confidence 2344433 4333222 45533222224677788888888776655554 456655
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=87.54 E-value=0.46 Score=48.49 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=31.3
Q ss_pred CceEEEECccHHHHHHHHHHHH---hcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQD---SYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~---~~G~~~~~~~V~l~~r~~~ 83 (465)
|++|+|||+|.-|.+.|..|++ . | ++|+++++++.
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~-g-----~~Vtlie~~~~ 41 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGS-G-----HEVTLISANDY 41 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGG-G-----SEEEEECSSSE
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCC-c-----CEEEEEeCCCC
Confidence 5789999999999999999998 5 5 89999998874
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=87.54 E-value=0.89 Score=44.39 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=26.3
Q ss_pred CCCceEEEECccHH-HHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 41 GDPLRIVGVGAGAW-GSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 41 ~~~mkIaIIGaGam-GsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
-..++++|||+|.+ |..+|..|... |. +..|++..+
T Consensus 156 l~gk~vvVvG~s~iVG~p~A~lL~~~-g~---~atVtv~h~ 192 (281)
T 2c2x_A 156 IAGAHVVVIGRGVTVGRPLGLLLTRR-SE---NATVTLCHT 192 (281)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHTST-TT---CCEEEEECT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHhcC-CC---CCEEEEEEC
Confidence 34579999999975 99999999765 20 157877643
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=87.46 E-value=0.43 Score=46.54 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=28.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|||.|.|+ |.+|++++..|.+. |. .+.|+..+|..
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~-g~---~~~v~~~~~~~ 60 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQS-YE---TYKIINFDALT 60 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHH-CT---TEEEEEEECCC
T ss_pred CCCeEEEECCccHHHHHHHHHHHhh-CC---CcEEEEEeccc
Confidence 4589999998 99999999999998 61 14566666553
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=87.38 E-value=0.85 Score=44.16 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=33.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..++|.|.|+ |.+|.++|..|++. | ++|.+.+|+++.++
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~-G-----~~V~~~~r~~~~~~ 69 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARR-G-----ARLVLSDVDQPALE 69 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 3467999997 78999999999999 8 89999999986544
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=0.41 Score=48.98 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=30.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-...++|+|||+|.-|.+.|..|++. | ++|+++.++.
T Consensus 13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~-g-----~~v~v~E~~~ 49 (478)
T 2ivd_A 13 RTTGMNVAVVGGGISGLAVAHHLRSR-G-----TDAVLLESSA 49 (478)
T ss_dssp ----CCEEEECCBHHHHHHHHHHHTT-T-----CCEEEECSSS
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-C-----CCEEEEEcCC
Confidence 33457899999999999999999998 7 8999998865
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=87.24 E-value=0.54 Score=46.14 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=30.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.++|+|||+|.-|.+.|..|++. | ++|+++++++
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~~ 47 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMN-N-----ISCRIIESMP 47 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCC
Confidence 36899999999999999999988 7 8999999865
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.23 E-value=0.65 Score=44.39 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=32.0
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.++|.|.|+ |.+|.+++..|++. | ++|.+.+|+++..+
T Consensus 29 ~k~vlVTGas~gIG~aia~~L~~~-G-----~~V~~~~r~~~~~~ 67 (276)
T 2b4q_A 29 GRIALVTGGSRGIGQMIAQGLLEA-G-----ARVFICARDAEACA 67 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC-C-----CEEEEEeCCHHHHH
Confidence 357889986 88999999999999 8 89999999876443
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=87.22 E-value=0.49 Score=51.55 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..|+|||+|..|.+.|..|++. | .+|+++.++.
T Consensus 265 ~DVvIIGgGiaGlsaA~~La~~-G-----~~V~vlEk~~ 297 (689)
T 3pvc_A 265 DDIAIIGGGIVSALTALALQRR-G-----AVVTLYCADA 297 (689)
T ss_dssp SSEEEECCSHHHHHHHHHHHTT-T-----CCEEEEESSS
T ss_pred CCEEEECCcHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 6899999999999999999999 8 8999999864
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=87.21 E-value=0.5 Score=45.39 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=28.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|+|.|.|+ |.+|.+++..|++. | ++|++.+|+..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 37 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQN-N-----WHAVGCGFRRA 37 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT-T-----CEEEEEC----
T ss_pred CeEEEECCCcHHHHHHHHHHHhC-C-----CeEEEEccCCC
Confidence 68999998 99999999999998 7 89999998653
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.21 E-value=0.44 Score=42.88 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=31.0
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCe--eEEEEecCch
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKV--LIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~--~V~l~~r~~~ 83 (465)
.|+|.|.| +|.+|.+++..|++. | + +|++.+|+++
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~-g-----~~~~V~~~~r~~~ 42 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSE-P-----TLAKVIAPARKAL 42 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHC-T-----TCCEEECCBSSCC
T ss_pred CceEEEECCCcHHHHHHHHHHHhC-C-----CCCeEEEEeCCCc
Confidence 47999999 599999999999998 7 6 8999999874
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=0.57 Score=47.43 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=26.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..++|++.|||+-|..++..+.-. . ..-..++|.++.
T Consensus 318 ~gk~v~~yGa~~~g~~l~~~~~~~-~----~~i~~~~D~~~~ 354 (416)
T 4e2x_A 318 EGRSVVGYGATAKSATVTNFCGIG-P----DLVHSVYDTTPD 354 (416)
T ss_dssp TTCCEEEECCCSHHHHHHHHHTCC-T----TTSCCEEESCGG
T ss_pred cCCeEEEEccccHHHHHHHhcCCC-c----ceeeEEEeCCcc
Confidence 346899999999999998887432 1 133557788774
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=87.12 E-value=0.65 Score=49.34 Aligned_cols=38 Identities=26% Similarity=0.203 Sum_probs=32.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+++|+|||+|.-|.+.|..|++. + ++++|+++++++.
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~-~---~g~~V~vie~~~~ 72 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRL-S---EEDEIIMVERGEY 72 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-C---SSSEEEEECSSSC
T ss_pred cCCCEEEECCcHHHHHHHHHHHhh-C---cCCCEEEEECCCC
Confidence 457999999999999999999987 3 1379999998764
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=87.06 E-value=0.59 Score=43.38 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=30.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|..|...|..|++. | .+|+++.++.
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~-g-----~~v~lie~~~ 36 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQK-G-----VRVGLLTQSL 36 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESCG
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEecCC
Confidence 5799999999999999999998 7 8999999874
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=87.05 E-value=0.38 Score=45.49 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=30.6
Q ss_pred ceEEEECc-cHHHHHHHHHHHHh-cCCCCCCeeEEEEecCchhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDS-YGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~-~G~~~~~~~V~l~~r~~~~~ 85 (465)
|+|.|.|+ |.+|++++..|.+. .| ++|++.+|+++..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-----~~V~~~~r~~~~~ 39 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-----SQIIAIVRNVEKA 39 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-----GGEEEEESCTTTT
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-----CeEEEEEcCHHHH
Confidence 57999997 99999999999864 13 8999999987543
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=86.91 E-value=0.67 Score=45.10 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=31.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+|+|.|.|+ |.+|.+++..|++. | ++|++.+|+..
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~-g-----~~V~~~~r~~~ 56 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLER-G-----DKVVGIDNFAT 56 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECCSS
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC-C-----CEEEEEECCCc
Confidence 479999995 99999999999998 7 89999999753
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=86.85 E-value=0.54 Score=49.31 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=31.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+|+|||+|..|.++|..|++. | .+|+++.+++.
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~~-G-----~~v~viEr~~~ 39 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLARQ-G-----VRVLVVERRPG 39 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSSSS
T ss_pred cCcEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 36899999999999999999998 8 89999998764
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=86.80 E-value=0.7 Score=44.79 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=31.6
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.|+|.|.| +|-+|+.++..|.+. | ++|++..|+.+.
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~-G-----~~V~~~~r~~~~ 45 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQK-G-----YAVNTTVRDPDN 45 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHT-T-----CEEEEEESCTTC
T ss_pred CCEEEEECCchHHHHHHHHHHHHC-C-----CEEEEEEcCcch
Confidence 57899999 599999999999998 7 899998887653
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=86.74 E-value=0.64 Score=44.71 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=29.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.+|+|||+|.-|.+.|..|++. | ++|++++++
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~-g-----~~v~lie~~ 48 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARS-G-----FSVAILDKA 48 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred CcEEEECcCHHHHHHHHHHHhC-C-----CcEEEEeCC
Confidence 5799999999999999999998 7 899999884
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 465 | ||||
| d1txga1 | 155 | a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydro | 6e-15 | |
| d1n1ea1 | 160 | a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydro | 5e-13 | |
| d1n1ea2 | 189 | c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen | 4e-06 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 3e-04 | |
| d1txga2 | 180 | c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen | 0.004 |
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 155 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 69.7 bits (170), Expect = 6e-15
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 22/165 (13%)
Query: 276 DLVTHEVMGGLKNVYAIGAGMVAAL----TNESATSKSVYFAHCTSEMVFITHLLAEEPE 331
D++ E+ LKNVY+I + E + +K V +EM + +L + E
Sbjct: 1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRE 60
Query: 332 KLAGPL-LADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIK--GKGMIQGISAVKAFYEL 388
G D T GRN G+ L KG + + ++ G G+++G + Y L
Sbjct: 61 TAFGLSGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRL 120
Query: 389 LSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE 433
S+ + +L +Y++L + + E
Sbjct: 121 SSKINADT---------------KLLDSIYRVLYEGLKVEEVLFE 150
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 160 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 64.6 bits (157), Expect = 5e-13
Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 21/172 (12%)
Query: 276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMV-FITHLLAEEPEKLA 334
D V EV +KNV AIG+G+ L +++ E+ L +
Sbjct: 2 DTVGCEVASAVKNVLAIGSGVANGL-GMGLNARAALIMRGLLEIRDLTAALGGDGSAVFG 60
Query: 335 GPLLADTYVTLLKGRNAWYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSL 394
L D +T + + G+ K + +G++ L Q +
Sbjct: 61 LAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKV 120
Query: 395 SVLHPEENKPVATVELCPILKMLYKILIMRESPIQAILE----ALRDETMND 442
+ P+ +Y+I+ +++P A+ + L+DE +
Sbjct: 121 KM---------------PLCHQIYEIVYKKKNPRDALADLLSCGLQDEGLPP 157
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Score = 45.2 bits (106), Expect = 4e-06
Identities = 32/235 (13%), Positives = 72/235 (30%), Gaps = 63/235 (26%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+ V G+GA+G+ +L +V +W E+ +
Sbjct: 9 KAVVFGSGAFGTALAMVLSKK----CREV--CVWHM-------------------NEEEV 43
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
R + + + +++ N+ T ++++A A+I+
Sbjct: 44 RLVNEKRENVLFLK--------------GVQLASNITFTS--------DVEKAYNGAEII 81
Query: 165 INGLPSTETKEVFEEISRYWKERITVP--VIISLAKGVEAELEAVPRIITPTQMINRATG 222
+ +P+ + FE+ ++ KG+E
Sbjct: 82 LFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERS-------TLKFPAEIIGEF 134
Query: 223 VPIENILYLGGPNIASEIYNKEYANARICG-----AEKWRKPLAKFLRRPHFTVW 272
+P + L GP+ A E+ + I A + ++ ++ R F W
Sbjct: 135 LPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRS--FVCW 187
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 40.0 bits (93), Expect = 3e-04
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 1/107 (0%)
Query: 101 EDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWD 160
++V+ + + R + + C++++ LKV ++ +EAV
Sbjct: 82 KEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEG 141
Query: 161 ADIVINGLPSTE-TKEVFEEISRYWKERITVPVIISLAKGVEAELEA 206
ADIVI LP ++ ++ + E V ++ A++
Sbjct: 142 ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK 188
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 36.2 bits (82), Expect = 0.004
Identities = 35/229 (15%), Positives = 72/229 (31%), Gaps = 54/229 (23%)
Query: 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVL 104
+ +GAGA GS + L D+ +RIW G D + +
Sbjct: 2 IVSILGAGAMGSALSVPLVDN------GNEVRIW---GTEFDTEILKSISAGRE------ 46
Query: 105 RRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIV 164
+ + L++ + +A++V
Sbjct: 47 -------------------------------HPRLGVKLNGVEIFWPEQLEKCLENAEVV 75
Query: 165 INGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVP 224
+ G+ + V I Y K++ I+ ++KG+ ++ ++T + + R
Sbjct: 76 LLGVSTDGVLPVMSRILPYLKDQY----IVLISKGL---IDFDNSVLTVPEAVWRLKHDL 128
Query: 225 IENILYLGGPNIASEIYNKEYANARICGA-EKWRKPLAKFLRRPHFTVW 272
E + + GP IA E+ + E + + +F V
Sbjct: 129 RERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVE 177
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 465 | |||
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 100.0 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 100.0 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.97 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.95 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.68 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.66 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.64 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.61 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.52 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 99.5 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.38 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.31 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.29 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.29 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.23 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.19 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.11 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.09 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 99.07 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.07 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.01 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.97 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.63 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.55 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.52 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.49 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.49 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.47 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.43 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.39 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.37 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.36 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.3 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.3 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.26 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.21 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.11 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.07 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 98.01 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.95 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.95 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.94 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.92 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.89 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.88 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.83 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.82 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.82 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.76 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.7 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.61 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.59 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.52 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.52 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.38 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.37 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.36 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.31 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.26 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.25 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.21 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.14 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.13 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.12 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 97.11 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 97.11 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.1 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 96.99 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 96.99 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 96.95 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 96.94 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 96.91 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 96.87 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.59 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.56 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.56 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.55 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.5 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.49 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.48 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.43 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.26 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.19 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.05 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.99 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.98 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.96 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.95 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.9 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 95.89 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.86 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 95.85 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.77 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 95.76 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 95.75 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.7 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.68 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 95.64 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.58 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.5 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.46 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.46 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.46 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 95.43 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 95.38 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.31 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.14 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 95.12 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.12 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 95.07 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.07 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.06 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.03 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.98 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 94.95 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 94.94 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.91 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.87 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.86 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.8 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.75 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 94.75 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.74 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.7 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.64 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 94.63 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 94.59 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 94.4 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 94.38 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 94.21 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.18 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 94.0 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.96 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.86 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 93.65 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 93.49 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 93.48 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 93.48 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.48 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.45 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.44 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.26 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.26 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.02 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 92.92 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.66 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 92.65 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.43 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.07 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.07 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 91.84 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 91.71 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 91.31 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 91.3 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.77 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 90.65 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.6 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 90.57 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 90.47 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 90.33 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 90.32 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 90.27 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 90.21 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 90.16 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 90.12 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 89.75 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 89.67 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 89.36 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 89.29 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 89.21 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 89.12 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 89.04 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 89.04 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 89.0 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.97 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 88.81 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 88.81 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 88.78 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 88.49 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 88.18 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 88.01 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 87.94 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 87.82 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 87.76 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 87.31 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.0 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.84 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 86.65 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 86.59 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 86.48 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 86.17 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 85.96 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 85.91 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 85.25 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 85.07 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 84.98 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 84.56 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 84.42 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 84.07 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 83.91 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 83.89 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 83.81 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 83.5 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 83.48 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 83.44 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 83.21 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 83.13 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 83.11 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.0 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 82.93 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 82.9 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 82.85 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 82.83 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 82.81 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 82.77 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 82.67 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 82.63 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 82.4 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 82.34 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 82.28 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 82.13 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.12 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 82.1 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 81.91 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 81.46 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 81.35 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 81.19 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 81.09 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 80.9 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 80.86 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 80.79 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 80.63 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 80.62 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 80.52 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 80.39 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 80.19 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 80.07 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 80.07 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 80.06 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 80.01 |
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=100.00 E-value=9.3e-36 Score=270.22 Aligned_cols=152 Identities=23% Similarity=0.321 Sum_probs=142.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhccc--CchhH
Q 012349 275 GDLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLL--KGRNA 351 (465)
Q Consensus 275 ~Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~--~sRN~ 351 (465)
+|++|+|+||++||||||++|+++|+++| +|++|++++++++||.++++++|++++|+.++ |+|||++||+ .||||
T Consensus 1 tD~~GvE~~galKNi~Aia~Gi~~gl~~g-~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~ 79 (160)
T d1n1ea1 1 TDTVGCEVASAVKNVLAIGSGVANGLGMG-LNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNF 79 (160)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHH
Confidence 69999999999999999999999999997 79999999999999999999999999999996 9999999996 79999
Q ss_pred HHHHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHHHHH
Q 012349 352 WYGQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPIQAI 431 (465)
Q Consensus 352 ~~G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~~~~ 431 (465)
+||+.+++|.+.+++++. .++++||+.|++.++++++++++ + +||+++||+||+++.+|.+++
T Consensus 80 ~~G~~l~~g~~~~e~~~~--~~~~vEG~~t~~~v~~l~~~~~i--------------~-~Pi~~~vy~Il~~~~~p~~~i 142 (160)
T d1n1ea1 80 TVGKKLGKGLPIEEIQRT--SKAVAEGVATADPLMRLAKQLKV--------------K-MPLCHQIYEIVYKKKNPRDAL 142 (160)
T ss_dssp HHHHHHHHTCCHHHHHHS--CCSCCHHHHHHHHHHHHHHHHTC--------------C-CHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHhccccHHHHHHh--ccchHHHHHHHHHHHHHHHHcCC--------------C-CcHHHHHHHHHhCcCCHHHHH
Confidence 999999999998887653 34689999999999999999994 6 899999999999999999999
Q ss_pred HHHHhcccCCCcc
Q 012349 432 LEALRDETMNDPR 444 (465)
Q Consensus 432 ~~ll~~~~~~~~~ 444 (465)
..||.++.+.|.-
T Consensus 143 ~~Lm~r~~k~E~~ 155 (160)
T d1n1ea1 143 ADLLSCGLQDEGL 155 (160)
T ss_dssp HHHTTSCSCBCCC
T ss_pred HHHHCCCCCCCCC
Confidence 9999999988753
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-35 Score=267.69 Aligned_cols=147 Identities=23% Similarity=0.367 Sum_probs=136.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcccCC----CcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhcccCchh
Q 012349 276 DLVTHEVMGGLKNVYAIGAGMVAALTNE----SATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRN 350 (465)
Q Consensus 276 Di~gve~~galKNviAia~Gi~~gl~~g----~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN 350 (465)
|++|+|+||++||||||++|+++|+++| ++|++|++++++++||.+|++++|++++|++++ |+|||++||+.|||
T Consensus 1 DviGvEi~galKNi~Aia~Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~sRN 80 (155)
T d1txga1 1 DIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRGGRN 80 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTCHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCCCCc
Confidence 8999999999999999999999999864 268999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHhcCCChhhHhHhhc--CCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhcCCCHH
Q 012349 351 AWYGQELAKGRLTLDLGDSIK--GKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIMRESPI 428 (465)
Q Consensus 351 ~~~G~~l~~g~~~~~~~~~~~--~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~~~~~~ 428 (465)
|+||+++++|.+++++.+++. ...++||+.|+++++++++++++ + +||+++||+||+++.+|.
T Consensus 81 ~~~G~~l~~G~~~~e~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i--------------~-~Pi~~~vy~Il~~~~~~~ 145 (155)
T d1txga1 81 GMLGELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINA--------------D-TKLLDSIYRVLYEGLKVE 145 (155)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTC--------------C-CHHHHHHHHHHHSCCCHH
T ss_pred cHHHHHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC--------------C-CcHHHHHHHHHhCcCCHH
Confidence 999999999999888776653 33479999999999999999994 6 899999999999999999
Q ss_pred HHHHHHHhc
Q 012349 429 QAILEALRD 437 (465)
Q Consensus 429 ~~~~~ll~~ 437 (465)
+++.+||.|
T Consensus 146 ~~i~~L~~R 154 (155)
T d1txga1 146 EVLFELATF 154 (155)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999999986
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.97 E-value=2.4e-31 Score=247.21 Aligned_cols=175 Identities=19% Similarity=0.347 Sum_probs=148.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|+||+|||+|+||+++|..|+++ | |+|++|+|+++.++.+ ++.+ +|++|+|++.
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~-g-----~~V~l~~r~~~~~~~i---------~~~~-------~n~~yl~~~~---- 60 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKK-C-----REVCVWHMNEEEVRLV---------NEKR-------ENVLFLKGVQ---- 60 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT-E-----EEEEEECSCHHHHHHH---------HHHT-------BCTTTSTTCB----
T ss_pred eceEEEECCCHHHHHHHHHHHHc-C-----CeEEEEEecHHHHHHH---------hhcc-------cccccccccc----
Confidence 46799999999999999999999 7 9999999999877764 3332 5888888752
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhh-----hccCCCCEEEEee
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYW-----KERITVPVIISLA 197 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l-----~~~~~~~ivIs~~ 197 (465)
+| .++.+++|+++++.++|+||+|||++.++++++++.+++ .+ +.++++++
T Consensus 61 ---l~------------------~~i~~t~~l~~a~~~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~---~~~ii~~t 116 (189)
T d1n1ea2 61 ---LA------------------SNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEK---QVPVLVCT 116 (189)
T ss_dssp ---CC------------------TTEEEESCHHHHHTTCSCEEECSCHHHHHHHHHHHCHHHHHHHHHH---TCCEEECC
T ss_pred ---cc------------------cccccchhhhhccCCCCEEEEcCcHHHHHHHHHHHHhhhhhhhccC---CcEEEEEE
Confidence 22 268999999999999999999999999999999998753 33 57899999
Q ss_pred ccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcC--CCCeEEec
Q 012349 198 KGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRR--PHFTVWDN 274 (465)
Q Consensus 198 kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~--~g~~v~~s 274 (465)
||++.+ +.+++++++.+.++. .++++++||+||.|+++|.|+.++++ .+.+.++.++++|++ ..||+|.+
T Consensus 117 KGie~~-----t~~~~seii~e~~~~--~~~~vlsGP~~A~Ev~~~~pt~~viAs~~~~~a~~i~~lfst~~~~frvy~S 189 (189)
T d1n1ea2 117 KGIERS-----TLKFPAEIIGEFLPS--PLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMSTGDRSFVCWAT 189 (189)
T ss_dssp CSCCTT-----TCCCHHHHHTTTSCG--GGEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHHHSCTTSSEEEEEE
T ss_pred CCCccC-----CccchhhHHHHHhcc--cceEEEecCCcHHHHHcCCCcEEEEEeCCHHHHHHHHHHhCCCCCCEEEecC
Confidence 999876 678999999998863 46899999999999999999988765 467889999999986 45999975
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=2.8e-28 Score=224.31 Aligned_cols=177 Identities=20% Similarity=0.253 Sum_probs=140.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch--hhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR--SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~--~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
|||+|||+|+||+++|..|+++ | ++|++|+|+.+ .++. +++++ +|+.+...
T Consensus 1 MkI~ViGaG~~GtalA~~la~~-g-----~~V~l~~r~~~~~~~~~---------i~~~~-------~~~~~~~~----- 53 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN-G-----NEVRIWGTEFDTEILKS---------ISAGR-------EHPRLGVK----- 53 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH-C-----CEEEEECCGGGHHHHHH---------HHTTC-------CBTTTTBC-----
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEEecccHHHHHH---------Hhhhh-------hhhhhcch-----
Confidence 8999999999999999999999 7 99999998543 2332 33332 24433221
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
++ ...+.+++|+++++.++|+||+|||++.++++++++.+++++ ..+++++||+.
T Consensus 54 ----~~-----------------~~~i~~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~~~l~~----~~ii~~tkg~~ 108 (180)
T d1txga2 54 ----LN-----------------GVEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYLKD----QYIVLISKGLI 108 (180)
T ss_dssp ----CC-----------------SEEEECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTTTCCS----CEEEECCCSEE
T ss_pred ----hc-----------------cccccccccHHHHHhccchhhcccchhhhHHHHHhhcccccc----ceecccccCcc
Confidence 10 014667899999999999999999999999999999999874 57888999986
Q ss_pred ccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe-CChhHHHHHHHHHcCCCCeEEecC
Q 012349 202 AELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC-GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~-~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
... ....++++++.+..+....++++++|||||.|++.++|+.++++ .+.+.++.++++|++.+|++|.++
T Consensus 109 ~~~---~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias~~~~~a~~i~~~f~~~~frvy~St 180 (180)
T d1txga2 109 DFD---NSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFETEYFGVEVTT 180 (180)
T ss_dssp EET---TEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEECSCHHHHHHHHHHHCBTTEEEEEES
T ss_pred ccc---cccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEEcCCHHHHHHHHHHHCCCCEEEEeCC
Confidence 542 13456889898877644456899999999999999999888765 466889999999999999999874
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.68 E-value=6.1e-17 Score=143.88 Aligned_cols=149 Identities=17% Similarity=0.144 Sum_probs=112.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||++|+..|.++ | ++|++|+|+.+..+.+ .+. +
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~-~-----~~i~v~~r~~~~~~~l---------~~~-------------~--------- 43 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT-P-----HELIISGSSLERSKEI---------AEQ-------------L--------- 43 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS-S-----CEEEEECSSHHHHHHH---------HHH-------------H---------
T ss_pred CEEEEEeccHHHHHHHHHHHhC-C-----CeEEEEcChHHhHHhh---------ccc-------------c---------
Confidence 8999999999999999999887 6 8999999997654431 110 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
++.++.+.+++++++|+||+|||++.++++++.+ .+ ++.++|++.|+..+
T Consensus 44 -----------------------g~~~~~~~~~~~~~~dvIilavkp~~~~~vl~~l----~~---~~~iis~~agi~~~ 93 (152)
T d2ahra2 44 -----------------------ALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPL----HF---KQPIISMAAGISLQ 93 (152)
T ss_dssp -----------------------TCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTS----CC---CSCEEECCTTCCHH
T ss_pred -----------------------ceeeechhhhhhhccceeeeecchHhHHHHhhhc----cc---ceeEecccccccHH
Confidence 1234567888899999999999999999887654 33 57899999998765
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeC--ChhHHHHHHHHHcCCCCeEEec
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICG--AEKWRKPLAKFLRRPHFTVWDN 274 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~--~~~~~~~l~~ll~~~g~~v~~s 274 (465)
.+++.++.. .+ .++.+||.+..+..+.. .+..+. +++..+.++++|+.-|..+++.
T Consensus 94 ------------~l~~~l~~~-~~-ivr~mPN~~~~v~~g~~-~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~ 151 (152)
T d2ahra2 94 ------------RLATFVGQD-LP-LLRIMPNMNAQILQSST-ALTGNALVSQELQARVRDLTDSFGSTFDIS 151 (152)
T ss_dssp ------------HHHHHHCTT-SC-EEEEECCGGGGGTCEEE-EEEECTTCCHHHHHHHHHHHHTTEEEEECC
T ss_pred ------------HHHhhhccc-cc-chhhccchhhhcCccce-EEEeCCCCCHHHHHHHHHHHHhCCCEEEec
Confidence 467777642 23 57889999998877642 223332 5678899999999988665543
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.66 E-value=1.7e-16 Score=140.67 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=111.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||++|+..|.++ | +++|.+|+|++++.+++. +. +
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~-~----~~~i~v~~r~~~~~~~l~---------~~------------~---------- 44 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ-G----GYRIYIANRGAEKRERLE---------KE------------L---------- 44 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-C----SCEEEEECSSHHHHHHHH---------HH------------T----------
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-C----CCcEEEEeCChhHHHHhh---------hh------------c----------
Confidence 8999999999999999999888 6 389999999987655321 10 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
++.++++.++ +.++|+||+|||++.+.++++++.+ . ++++||++.|+..+
T Consensus 45 -----------------------~~~~~~~~~~-v~~~Div~lavkP~~~~~v~~~l~~---~---~~~viS~~ag~~~~ 94 (152)
T d1yqga2 45 -----------------------GVETSATLPE-LHSDDVLILAVKPQDMEAACKNIRT---N---GALVLSVAAGLSVG 94 (152)
T ss_dssp -----------------------CCEEESSCCC-CCTTSEEEECSCHHHHHHHHTTCCC---T---TCEEEECCTTCCHH
T ss_pred -----------------------cccccccccc-ccccceEEEecCHHHHHHhHHHHhh---c---ccEEeecccCCCHH
Confidence 2344555544 6789999999999999999888753 2 57899999999764
Q ss_pred ccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEe
Q 012349 204 LEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
.+++.++.. . ..++.+||.+..+..|... ++.+ .+++..+.++++|+..|..+++
T Consensus 95 ------------~l~~~l~~~-~-~iir~mpn~p~~~~~g~t~-~~~~~~~~~~~~~~v~~l~~~~G~~~~v 151 (152)
T d1yqga2 95 ------------TLSRYLGGT-R-RIVRVMPNTPGKIGLGVSG-MYAEAEVSETDRRIADRIMKSVGLTVWL 151 (152)
T ss_dssp ------------HHHHHTTSC-C-CEEEEECCGGGGGTCEEEE-EECCTTSCHHHHHHHHHHHHTTEEEEEC
T ss_pred ------------HHHHHhCcC-c-ceEeecccchhHhcCCcEE-EEeCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence 477878632 2 3678999999998877532 3332 2467788899999998865553
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.4e-16 Score=141.30 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=106.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|+||+++|..|++. | |+|++|+|++++.+.++. . .....
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~-G-----~~V~~~~r~~~~~~~~~~---------~------------~~~~~------ 47 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ-G-----HEVQGWLRVPQPYCSVNL---------V------------ETDGS------ 47 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSEEEEEE---------E------------CTTSC------
T ss_pred CEEEEECcCHHHHHHHHHHHHC-C-----CceEEEEcCHHHhhhhcc---------c------------cCCcc------
Confidence 8999999999999999999999 8 999999999875543110 0 00000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
.. ......+..+++.++|+||++||+++++++++.+.+++.+ ++.|++++||+...
T Consensus 48 -~~--------------------~~~~~~~~~~~~~~~D~iii~vka~~~~~~~~~l~~~~~~---~~~Iv~~qNG~~~~ 103 (167)
T d1ks9a2 48 -IF--------------------NESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPV---TTPILLIHNGMGTI 103 (167)
T ss_dssp -EE--------------------EEEEEESCHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCT---TSCEEEECSSSCTT
T ss_pred -cc--------------------ccccccchhhhhcccceEEEeecccchHHHHHhhccccCc---ccEEeeccCcccHH
Confidence 00 1123334446678999999999999999999999999876 78899999999875
Q ss_pred ccccccCCCHHHHHHhHhCCCC----ccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEE
Q 012349 204 LEAVPRIITPTQMINRATGVPI----ENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~----~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (465)
+.+++. ..+. ...++...|+...+.+.|...........+..+.++++|+....++.
T Consensus 104 -----------~~l~~~-~~~v~~g~~~~~~~~~~~~i~~~~~g~t~ig~~~~~~~~~~~l~~~l~~a~~~~~ 164 (167)
T d1ks9a2 104 -----------EELQNI-QQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVLPDVA 164 (167)
T ss_dssp -----------GGGTTC-CSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCEE
T ss_pred -----------HHHhhc-CCcEEEEEeeEeEEecCCEEEEeCCcCEEEeeCCCcchhHHHHHHHHHhhCCCCc
Confidence 223331 1110 01233445556666666653322222233456778888987766654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.61 E-value=4.1e-15 Score=132.79 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=105.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.||++||..|.++ | ++|+.|+|+++.++++++ .+ .
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~-g-----~~V~~~d~~~~~~~~a~~---------~~------------~--------- 44 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR-G-----HYLIGVSRQQSTCEKAVE---------RQ------------L--------- 44 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH---------TT------------S---------
T ss_pred CEEEEEeecHHHHHHHHHHHHC-C-----CEEEEEECCchHHHHHHH---------hh------------c---------
Confidence 8999999999999999999998 7 999999999875553111 00 0
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
-..+.++. ++++++|+||+|||...++++++++.+++++ +++|++++ ++...
T Consensus 45 -----------------------~~~~~~~~-~~~~~~DiIilavp~~~~~~vl~~l~~~l~~---~~iv~~~~-s~~~~ 96 (165)
T d2f1ka2 45 -----------------------VDEAGQDL-SLLQTAKIIFLCTPIQLILPTLEKLIPHLSP---TAIVTDVA-SVKTA 96 (165)
T ss_dssp -----------------------CSEEESCG-GGGTTCSEEEECSCHHHHHHHHHHHGGGSCT---TCEEEECC-SCCHH
T ss_pred -----------------------cceeeeec-ccccccccccccCcHhhhhhhhhhhhhhccc---ccceeecc-ccchH
Confidence 01233444 5689999999999999999999999999887 67776654 33222
Q ss_pred ccccccCCCHHHHHHhHhCCC--CccE--EEEeCCchhh-hhhccCceEEEE--eCChhHHHHHHHHHcCCCCeEEe
Q 012349 204 LEAVPRIITPTQMINRATGVP--IENI--LYLGGPNIAS-EIYNKEYANARI--CGAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~--~~~i--~vlsGP~~a~-ev~~g~~t~~~~--~~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
....+.+..... .++. ...+||..+. +...+.+..++. ..+++..+.++++|+..|+++|.
T Consensus 97 ---------~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~ 164 (165)
T d2f1ka2 97 ---------IAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYL 164 (165)
T ss_dssp ---------HHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEE
T ss_pred ---------HHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCEEEe
Confidence 112233333210 0110 1234455443 233555544443 34677889999999999999885
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.52 E-value=2.2e-14 Score=128.91 Aligned_cols=109 Identities=21% Similarity=0.256 Sum_probs=83.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||+|+||+++|..|+++ | |+|++|+|+++.++.++. .+ .+..+.+...
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~-G-----~~V~~~~r~~~~~~~~~~---------~~-------~~~~~~~~~~----- 54 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK-G-----QSVLAWDIDAQRIKEIQD---------RG-------AIIAEGPGLA----- 54 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH---------HT-------SEEEESSSCC-----
T ss_pred CEEEEECccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHH---------cC-------CCchhhhhhh-----
Confidence 6999999999999999999999 8 999999999877665322 11 1223333210
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
.. ......++|++++++++|+||++||+++++++++++++++.+ +++| .+++|...
T Consensus 55 --~~-----------------~~~~~~~~~~~e~~~~aD~iii~v~~~~~~~~~~~i~~~l~~---~~~i-v~~~g~~~ 110 (184)
T d1bg6a2 55 --GT-----------------AHPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISE---GQLI-ILNPGATG 110 (184)
T ss_dssp --EE-----------------ECCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TCEE-EESSCCSS
T ss_pred --hh-----------------hhhhhhhhhhHhHhcCCCEEEEEEchhHHHHHHHHhhhccCC---CCEE-EEeCCCCc
Confidence 00 014567889999999999999999999999999999999987 6655 46777654
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.38 E-value=4.7e-13 Score=119.12 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=101.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||.|.||..+|..|+++ | ++|++|+|+++.++.+ .+.
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~-G-----~~V~~~d~~~~~~~~~---------~~~----------------------- 42 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA-G-----YSLVVSDRNPEAIADV---------IAA----------------------- 42 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHH---------HHT-----------------------
T ss_pred CEEEEEehhHHHHHHHHHHHHC-C-----CeEEEEeCCcchhHHH---------HHh-----------------------
Confidence 7999999999999999999999 8 9999999998654431 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC-cchHHHHH---HHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP-STETKEVF---EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp-s~~l~~vl---~~l~~~l~~~~~~~ivIs~~kG 199 (465)
......+++++++++|+||+||| +..+++++ +.+.+.+++ ++++|.++..
T Consensus 43 -----------------------~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~---g~iiid~sT~ 96 (161)
T d1vpda2 43 -----------------------GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKP---GTVLIDMSSI 96 (161)
T ss_dssp -----------------------TCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCT---TCEEEECSCC
T ss_pred -----------------------hhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCC---CCEEEECCCC
Confidence 23455778888999999999998 56777777 446666665 6788877643
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccE---EEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEe
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENI---LYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i---~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
.+++ +..+.+.+......+ .+..||..+. .|..+ ++++++++..++++.+|+.-+-++++
T Consensus 97 -~p~~---------~~~~~~~~~~~g~~~vdapv~gg~~~a~---~g~l~-~~~gG~~~~~~~~~~il~~~~~~i~~ 159 (161)
T d1vpda2 97 -APLA---------SREISDALKAKGVEMLDAPVSGGEPKAI---DGTLS-VMVGGDKAIFDKYYDLMKAMAGSVVH 159 (161)
T ss_dssp -CHHH---------HHHHHHHHHTTTCEEEECCEESHHHHHH---HTCEE-EEEESCHHHHHHHHHHHHTTEEEEEE
T ss_pred -CHHH---------HHHHHHHHHHcCCceecccccCChhHHh---cCCeE-EEEcCCHHHHHHHHHHHHHhcCceEE
Confidence 3331 122223221111111 2333343333 45433 45677888889999999887666543
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.31 E-value=3.5e-12 Score=113.60 Aligned_cols=155 Identities=14% Similarity=0.181 Sum_probs=101.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|+||+|||.|.||++||..|.++ | ++|.+|+|+++..+.+ ..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~-g-----~~v~~~d~~~~~~~~~---------~~----------------------- 42 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA-G-----YLLNVFDLVQSAVDGL---------VA----------------------- 42 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSSHHHHHHH---------HH-----------------------
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC-C-----CeEEEEECchhhhhhh---------hh-----------------------
Confidence 57999999999999999999999 8 9999999997644321 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHH---HHHhhhccCCCCEEEEeec
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEE---ISRYWKERITVPVIISLAK 198 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~---l~~~l~~~~~~~ivIs~~k 198 (465)
.......++.+++..+|+|++++|.. ..++++.. +.+.+.+ ++++|.++.
T Consensus 43 -----------------------~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l~~---g~iiid~st 96 (162)
T d3cuma2 43 -----------------------AGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAP---GTLVLECST 96 (162)
T ss_dssp -----------------------TTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHHSCT---TCEEEECSC
T ss_pred -----------------------hhccccchhhhhccccCeeeecccchhhHHHHHhccccccccCCC---CCEEEECCC
Confidence 01234567788899999999999965 55666554 4455554 677776664
Q ss_pred cccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEE
Q 012349 199 GVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVW 272 (465)
Q Consensus 199 Gi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~ 272 (465)
. .+++ .....+.+++ .|.......+..||..|. .|..+ ++++++++..++++.+|+.-+.+++
T Consensus 97 ~-~p~~-----~~~~~~~~~~-~gi~~~dapv~Gg~~~a~---~G~l~-~~~gG~~~~~~~~~~il~~~~~~v~ 159 (162)
T d3cuma2 97 I-APTS-----ARKIHAAARE-RGLAMLDAPVSGGTAGAA---AGTLT-FMVGGDAEALEKARPLFEAMGRNIF 159 (162)
T ss_dssp C-CHHH-----HHHHHHHHHH-TTCEEEECCEESCHHHHH---HTCEE-EEEESCHHHHHHHHHHHHHHEEEEE
T ss_pred C-CHHH-----HHHHHHHHHH-CCCcEEecccccCccccc---cCCeE-EEecCCHHHHHHHHHHHHHHcCccE
Confidence 4 3331 1122233322 222111223556665554 45433 4567788888999999987665554
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=3e-11 Score=110.71 Aligned_cols=181 Identities=14% Similarity=0.206 Sum_probs=117.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
.+||+|||+|.||+.||..++.+ | ++|++|+++++.+++... .+...+.... +. .......
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~-G-----~~V~l~D~~~~~l~~a~~-~i~~~l~~~~-------~~-~~~~~~~---- 64 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT-G-----HTVVLVDQTEDILAKSKK-GIEESLRKVA-------KK-KFAENPK---- 64 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHHH-HHHHHHHHHH-------HT-TSSSCHH----
T ss_pred eEEEEEECcCHHHHHHHHHHHhC-C-----CcEEEEECChHHHHHHHh-hHHHHHHHHH-------Hh-hhhccch----
Confidence 47999999999999999999999 8 999999999987765432 1222221110 00 0110000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
..++...+ .+.++..++|+.+++.++|+||.|+|.+ ..++++.+|.+++++ ++++.|.+.++
T Consensus 65 ----~~~~~~~~---------~l~~i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~---~~ilasnTS~l 128 (192)
T d1f0ya2 65 ----AGDEFVEK---------TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAE---HTIFASNTSSL 128 (192)
T ss_dssp ----HHHHHHHH---------HHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCT---TCEEEECCSSS
T ss_pred ----hhHHHHHH---------HHhhccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhccc---CceeeccCccc
Confidence 00000000 0125788999999999999999999985 688999999999987 78888888877
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecCC
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNGD 276 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~D 276 (465)
... + +.+.+..+ .++..+ ..|-+.. ....++.+ .+++..+.+.+++...|.......|
T Consensus 129 ~i~-----------~-la~~~~~p-~r~ig~HffnP~~~~-----~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 129 QIT-----------S-IANATTRQ-DRFAGLHFFNPVPVM-----KLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp CHH-----------H-HHTTSSCG-GGEEEEEECSSTTTC-----CEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred ccc-----------h-hhhhccCH-hHEEeeccccccCcc-----cEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 654 3 55555543 343322 2232221 11222222 3567788999999888887766666
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.29 E-value=4.7e-11 Score=109.89 Aligned_cols=180 Identities=17% Similarity=0.103 Sum_probs=114.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.+|.++|..||++ | ++|+.||.+++.++.++ ++. .+.+.+...
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~-g-----~~V~g~D~n~~~i~~ln---------~g~--------~p~~e~~~~----- 52 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR-G-----HEVIGVDVSSTKIDLIN---------QGK--------SPIVEPGLE----- 52 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHHHHH---------TTC--------CSSCCTTHH-----
T ss_pred CEEEEECCCHhHHHHHHHHHhC-C-----CcEEEEeCCHHHHHHhc---------ccC--------Ccccchhhh-----
Confidence 8999999999999999999999 8 99999999998777643 221 111222111
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------hHHHHHHHHHHhhhccCCCCEE
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------ETKEVFEEISRYWKERITVPVI 193 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------~l~~vl~~l~~~l~~~~~~~iv 193 (465)
|++...... ..+.+++|..+++.++|++|+|||.. .+.++++.+...++...++++|
T Consensus 53 ------~~l~~~~~~-------~~~~~~~~~~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~li 119 (202)
T d1mv8a2 53 ------ALLQQGRQT-------GRLSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTV 119 (202)
T ss_dssp ------HHHHHHHHT-------TCEEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEE
T ss_pred ------hhhhhhhcc-------cccccCCCHHHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcce
Confidence 111111000 25778999999999999999999863 4677777777665432124444
Q ss_pred EEeeccccccccccccCCCHHHHHHhHhCCCC-ccEEEEeCCchhhhhhc----cCceEEEEe-CChhHHHHHHHHHcCC
Q 012349 194 ISLAKGVEAELEAVPRIITPTQMINRATGVPI-ENILYLGGPNIASEIYN----KEYANARIC-GAEKWRKPLAKFLRRP 267 (465)
Q Consensus 194 Is~~kGi~~~~~~~~~~~~~se~I~e~lg~~~-~~i~vlsGP~~a~ev~~----g~~t~~~~~-~~~~~~~~l~~ll~~~ 267 (465)
| +...+.+.+ +......++.+..+... ..+.+.+.|.+..+... ..+...+++ .+++..+.++++|+.-
T Consensus 120 i-i~STv~pGt----t~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i 194 (202)
T d1mv8a2 120 V-VRSTVLPGT----VNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYREL 194 (202)
T ss_dssp E-ECSCCCTTH----HHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTS
T ss_pred e-eccccCCcc----hhhhhhhhhhccccccccccccchhhhhhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 4 333455542 22233344555444221 23668899999876442 223444555 4667788899999865
Q ss_pred CC
Q 012349 268 HF 269 (465)
Q Consensus 268 g~ 269 (465)
.-
T Consensus 195 ~~ 196 (202)
T d1mv8a2 195 DA 196 (202)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.23 E-value=5.1e-11 Score=105.93 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=99.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|+||+|||+|.||+++|..|.++ |. ..+|+.|+++++..+..+ +.+ ..
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~-g~---~~~I~~~D~~~~~~~~a~--------~~~-------------~~------- 48 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRS-GF---KGKIYGYDINPESISKAV--------DLG-------------II------- 48 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT-TC---CSEEEEECSCHHHHHHHH--------HTT-------------SC-------
T ss_pred CCEEEEEccCHHHHHHHHHHHhc-CC---CeEEEEEECChHHHHHHH--------Hhh-------------cc-------
Confidence 45799999999999999999988 62 146888888876544311 100 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHH-HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQ-EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~-eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
....++.. ....++|+||+|+|.+.+.++++++.+++++ +++++.++..-.
T Consensus 49 -------------------------~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~~l~~~~~~---~~ii~d~~s~k~ 100 (171)
T d2g5ca2 49 -------------------------DEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSE---DATVTDQGSVKG 100 (171)
T ss_dssp -------------------------SEEESCGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCT---TCEEEECCSCCT
T ss_pred -------------------------hhhhhhhhhhhccccccccccCCchhhhhhhhhhhccccc---cccccccccccH
Confidence 11223332 3345799999999999999999999999886 677776653222
Q ss_pred ccccccccCCCHHHHHHhHhCCC---CccEE--EEeCCchhhh-hhccCceEEEEe--CChhHHHHHHHHHcCCCCeEE
Q 012349 202 AELEAVPRIITPTQMINRATGVP---IENIL--YLGGPNIASE-IYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVW 272 (465)
Q Consensus 202 ~~~~~~~~~~~~se~I~e~lg~~---~~~i~--vlsGP~~a~e-v~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~ 272 (465)
. ..+.+.+.++.. .+|++ ..+||..+.+ +..|.+..++.. .+++..+.++++|+..|-++.
T Consensus 101 ~----------~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~ 169 (171)
T d2g5ca2 101 K----------LVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVE 169 (171)
T ss_dssp H----------HHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEE
T ss_pred H----------HHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 1 113344444321 12211 1234544432 345554433322 356678899999998887765
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.19 E-value=1.4e-10 Score=105.46 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=112.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..||+|||+|.||+.+|..++.+ | ++|++|+++++.+++... .+...+.+.. ......+..
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~-G-----~~V~l~D~~~~~l~~~~~-~i~~~l~~~~-------~~~~~~~~~---- 64 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASK-G-----TPILMKDINEHGIEQGLA-EAAKLLVGRV-------DKGRMTPAK---- 64 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHH-HHHHHHHHHH-------TTTSSCHHH----
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-C-----CeEEEEECCHHHHhhhhh-hhhhhHHhhh-------cccccchhh----
Confidence 457899999999999999999999 8 899999999887664321 1111111100 000111100
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc--hHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST--ETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~--~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.+.. +..+..+++.+ ++.++|+||.|+|.. ..++++.+|.+++++ ++++.|.+.+
T Consensus 65 ------~~~~-------------~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~lf~~l~~~~~~---~~IiaSnTS~ 121 (186)
T d1wdka3 65 ------MAEV-------------LNGIRPTLSYG-DFGNVDLVVEAVVENPKVKQAVLAEVENHVRE---DAILASNTST 121 (186)
T ss_dssp ------HHHH-------------HHHEEEESSST-TGGGCSEEEECCCSCHHHHHHHHHHHHTTSCT---TCEEEECCSS
T ss_pred ------hhhh-------------hceeecccccc-cccccceeeeeecchHHHHHHHHHHHHhhcCC---CeeEEecccc
Confidence 0000 12466777775 589999999999986 678899999999987 7899899988
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCccEEEE--eCCchhhhhhccCceEEEEe--CChhHHHHHHHHHcCCCCeEEecC
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIENILYL--GGPNIASEIYNKEYANARIC--GAEKWRKPLAKFLRRPHFTVWDNG 275 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~i~vl--sGP~~a~ev~~g~~t~~~~~--~~~~~~~~l~~ll~~~g~~v~~s~ 275 (465)
+... .+.+.+..| .++..+ ..|-+.. ....++.+ .+++..+.+.+++...|.......
T Consensus 122 l~i~------------~la~~~~~p-~r~~g~Hf~nP~~~~-----~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 183 (186)
T d1wdka3 122 ISIS------------LLAKALKRP-ENFVGMHFFNPVHMM-----PLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVN 183 (186)
T ss_dssp SCHH------------HHGGGCSCG-GGEEEEECCSSTTTC-----CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccHH------------HHHHhccCc-hheEeeccccCcccC-----CeEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 8764 355556543 343322 2222221 12223332 356778888888888887766655
Q ss_pred C
Q 012349 276 D 276 (465)
Q Consensus 276 D 276 (465)
|
T Consensus 184 d 184 (186)
T d1wdka3 184 D 184 (186)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.11 E-value=5.5e-10 Score=97.54 Aligned_cols=143 Identities=24% Similarity=0.264 Sum_probs=98.1
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 42 ~~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.++||+||| .|.||+.||..|.++ | ++|++|+|++...
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~-G-----~~V~~~d~~~~~~----------------------------------- 46 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRAS-G-----YPISILDREDWAV----------------------------------- 46 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTT-T-----CCEEEECTTCGGG-----------------------------------
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHc-C-----CCcEecccccccc-----------------------------------
Confidence 567999999 899999999999998 8 9999999876311
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.++.+.++|++++++|...+..++.++.+++++ +++++.++ ++
T Consensus 47 ---------------------------------~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~---~~iiiD~~-Sv 89 (152)
T d2pv7a2 47 ---------------------------------AESILANADVVIVSVPINLTLETIERLKPYLTE---NMLLADLT-SV 89 (152)
T ss_dssp ---------------------------------HHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCT---TSEEEECC-SC
T ss_pred ---------------------------------cchhhhhccccccccchhhheeeeecccccccC---CceEEEec-cc
Confidence 012356789999999999999999999998876 67777665 33
Q ss_pred cccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCeEEe
Q 012349 201 EAELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 201 ~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
... +.+.+.+..+.......-+.||..... .+.....+.+.+.+..+++.++|+..|-+++-
T Consensus 90 k~~---------~~~~~~~~~~~~~v~~hP~~Gp~~~~~--~g~~~v~~~g~~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 90 KRE---------PLAKMLEVHTGAVLGLHPMFGADIASM--AKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp CHH---------HHHHHHHHCSSEEEEEEECSCTTCSCC--TTCEEEEEEEECGGGTHHHHHHHHHTTCEEEE
T ss_pred CHH---------HHHHHHHHccCCEEEecccCCCccccc--CCcEEEEecCCCHHHHHHHHHHHHHhCCEEEe
Confidence 332 234455544321000113455544321 23332223355667789999999999988764
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.09 E-value=4.4e-10 Score=98.45 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=66.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||.|.||+++|..|.++ | ++|++|++++...... .. .+.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~-g-----~~v~~~~~~~~~~~~~--------~~----------------~~~------ 44 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR-G-----VEVVTSLEGRSPSTIE--------RA----------------RTV------ 44 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-T-----CEEEECCTTCCHHHHH--------HH----------------HHH------
T ss_pred CEEEEEcHHHHHHHHHHHHHHC-C-----CeEEEEcCchhHHHHH--------hh----------------hcc------
Confidence 8999999999999999999999 7 8999999877533220 00 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEee
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLA 197 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~ 197 (465)
.+ ..++++++.++|+||+|||.+...+++.++.+.+. +.+|.++
T Consensus 45 -----------------------~~--~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~~-----~~~id~s 88 (152)
T d1i36a2 45 -----------------------GV--TETSEEDVYSCPVVISAVTPGVALGAARRAGRHVR-----GIYVDIN 88 (152)
T ss_dssp -----------------------TC--EECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTCC-----SEEEECS
T ss_pred -----------------------cc--cccHHHHHhhcCeEEEEecCchHHHHHHhhcccCC-----ceeeccC
Confidence 12 34567889999999999999998888888877653 4566555
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.07 E-value=7.8e-10 Score=97.58 Aligned_cols=200 Identities=10% Similarity=0.041 Sum_probs=113.4
Q ss_pred ceEEEE-CccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGV-GAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaII-GaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|| |+|+||+++|..|+++ | |+|.+|+|++++++.+.. .++... +.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~-G-----~~V~l~~R~~e~~~~l~~-----~i~~~~-----------~~-------- 50 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL-G-----HEIVVGSRREEKAEAKAA-----EYRRIA-----------GD-------- 50 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT-T-----CEEEEEESSHHHHHHHHH-----HHHHHH-----------SS--------
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHHHHH-----HHHhcC-----------CC--------
Confidence 899999 7899999999999999 8 999999999987665322 122110 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
......+........+....+++.....+.+..+...... ............
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 102 (212)
T d1jaya_ 51 ------------------------ASITGMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILRE----KIVVSPLVPVSR 102 (212)
T ss_dssp ------------------------CCEEEEEHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHTT----SEEEECCCCEEC
T ss_pred ------------------------ceEEeeccccccchhhhhhhheeeeccchHHHHhhhhhcc----cccccccccccc
Confidence 1112233334455667888888877666665554443321 222222222211
Q ss_pred cccc--cccCCCHHHHHHhHhCCCCc--cEEEEeCCchhhhhhccCceEEEEeCChhHHHHH-HHHHcCCCCeEEecCCh
Q 012349 203 ELEA--VPRIITPTQMINRATGVPIE--NILYLGGPNIASEIYNKEYANARICGAEKWRKPL-AKFLRRPHFTVWDNGDL 277 (465)
Q Consensus 203 ~~~~--~~~~~~~se~I~e~lg~~~~--~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l-~~ll~~~g~~v~~s~Di 277 (465)
.... ..+.....+.....+..... .+.+.++|.+........+....++.++.....+ ..+.+..+|+.+. +
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~a~~~~~~~~~~~~g~~~~~---~ 179 (212)
T d1jaya_ 103 GAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLD---A 179 (212)
T ss_dssp CTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTTCCCCEEEEEEESCHHHHHHHHHHHHHSTTEEEEE---E
T ss_pred ccccccccccchhhhhhhhhhhhhcccccceeecHHHhcCcccccCccceEEeCCHHHHHHHHHHHhhCCCeEEEE---e
Confidence 1000 01234555666666643211 1112233333322223333333445555544444 4466678988763 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCC
Q 012349 278 VTHEVMGGLKNVYAIGAGMVAALTNES 304 (465)
Q Consensus 278 ~gve~~galKNviAia~Gi~~gl~~g~ 304 (465)
=+.+.++.++|+.++.+++..+.++|+
T Consensus 180 G~l~~a~~~e~~~~l~~~~~~~~~~g~ 206 (212)
T d1jaya_ 180 GPLSNSRLVESLTPLILNIMRFNGMGE 206 (212)
T ss_dssp ESGGGHHHHHTHHHHHHHHHHHHTCCC
T ss_pred ChHHHHHHHHhHHHHHHHHHHhCCCCC
Confidence 345668889999999999988777653
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=6.5e-12 Score=110.08 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=86.2
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCCc
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRT 125 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~ 125 (465)
|++||+|+||.+|+..|.+. + +.+.+|+|++++.+++ .+. ..
T Consensus 2 IgfIG~G~mg~~l~~~L~~~-~-----~~~~v~~R~~~~~~~l---------~~~-------------~~---------- 43 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR-Y-----EIGYILSRSIDRARNL---------AEV-------------YG---------- 43 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHH---------HHH-------------TC----------
T ss_pred EEEEeCcHHHHHHHHHHHhC-C-----CEEEEEeCChhhhcch---------hhc-------------cc----------
Confidence 78999999999999999765 3 4557999998765531 110 00
Q ss_pred ccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccccc
Q 012349 126 LHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELE 205 (465)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~ 205 (465)
.. ..+++++++.+|+||+|||++.+.++++++. .+ ++++++++.+.+.+
T Consensus 44 ----------------------~~-~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~---~~---~~ivi~~s~~~~~~-- 92 (153)
T d2i76a2 44 ----------------------GK-AATLEKHPELNGVVFVIVPDRYIKTVANHLN---LG---DAVLVHCSGFLSSE-- 92 (153)
T ss_dssp ----------------------CC-CCSSCCCCC---CEEECSCTTTHHHHHTTTC---CS---SCCEEECCSSSCGG--
T ss_pred ----------------------cc-ccchhhhhccCcEEEEeccchhhhHHHhhhc---cc---ceeeeecccchhhh--
Confidence 00 1234456788999999999999999988764 22 67899999887654
Q ss_pred ccccCCCHHHHHHhHhCCCCccEEEEeCCchhhh-hhccCceEEEEeCChhHHHHHHHHHcCCCCeEEec
Q 012349 206 AVPRIITPTQMINRATGVPIENILYLGGPNIASE-IYNKEYANARICGAEKWRKPLAKFLRRPHFTVWDN 274 (465)
Q Consensus 206 ~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~e-v~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~v~~s 274 (465)
.++.... ..+..+..|..... .+......+.++++++..+.++++|+..|.+++.-
T Consensus 93 ----------~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i 149 (153)
T d2i76a2 93 ----------IFKKSGR---ASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVI 149 (153)
T ss_dssp ----------GGCSSSE---EEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEEC
T ss_pred ----------hhhhhcc---ccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEe
Confidence 1222111 01111222222221 11111122345667788889999999878666543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.01 E-value=3.8e-10 Score=101.37 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=99.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
.+|+|||.|+||++||..|.++ | ++|++|+|++++++.+.+ ... +..+.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~-G-----~~V~v~dr~~~~~~~l~~--------~~~----------~~~~~------- 51 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH-G-----FVVCAFNRTVSKVDDFLA--------NEA----------KGTKV------- 51 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSTHHHHHHHH--------TTT----------TTSSC-------
T ss_pred CcEEEEeEhHHHHHHHHHHHHC-C-----CeEEEEcCCHHHHHHHHH--------hcc----------ccccc-------
Confidence 5899999999999999999999 8 999999999987664221 110 00000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
. ......++.+++.++|.+|+++|+ ..+.++++.+.+.+++ ++++|.++..-..
T Consensus 52 --~--------------------~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~v~~~l~~~~~~---g~iiid~sT~~~~ 106 (176)
T d2pgda2 52 --L--------------------GAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDI---GDIIIDGGNSEYR 106 (176)
T ss_dssp --E--------------------ECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHHHHHHHCCT---TCEEEECSCCCHH
T ss_pred --c--------------------chhhhhhhhhhhcccceEEEecCchHHHHHHHHHHHhcccc---CcEEEecCcchhH
Confidence 0 011124455678889999999986 5788899999988876 6778777644332
Q ss_pred cccccccCCCHHHHHHhHhCCCCccEEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCC
Q 012349 203 ELEAVPRIITPTQMINRATGVPIENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPH 268 (465)
Q Consensus 203 ~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g 268 (465)
. .....+.+.+ .+.......+..||.-|. .|. + ++++++++..++++.+|+.-+
T Consensus 107 ~------~~~~~~~~~~-~g~~~ldapvsGg~~~A~---~G~-~-~~~gG~~~~~~~~~~il~~~~ 160 (176)
T d2pgda2 107 D------TMRRCRDLKD-KGILFVGSGVSGGEDGAR---YGP-S-LMPGGNKEAWPHIKAIFQGIA 160 (176)
T ss_dssp H------HHHHHHHHHH-TTCEEEEEEEESHHHHHH---HCC-E-EEEEECTTTHHHHHHHHHHHS
T ss_pred H------HHHHHHHHHh-cCCceeccccccCccccc---CCc-E-EEcCCCHHHHHHHHHHHHHHh
Confidence 2 1122222322 232111234555565554 454 3 456777777788888887544
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.97 E-value=2e-09 Score=96.32 Aligned_cols=156 Identities=10% Similarity=0.127 Sum_probs=95.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||.|.||++||..|+++ | ++|.+|+|++++.+++.+ .+. +....+
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~-G-----~~V~~~dr~~~~~~~l~~--------~~~--------~~~~~~-------- 51 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK-G-----FKVAVFNRTYSKSEEFMK--------ANA--------SAPFAG-------- 51 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSHHHHHHHHH--------HTT--------TSTTGG--------
T ss_pred CEEEEEeehHHHHHHHHHHHHC-C-----CeEEEEECCHHHHHHHHH--------cCC--------cccccc--------
Confidence 8999999999999999999999 8 999999999887664221 111 000100
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCH---HHHhcCCCEEEEecCc-chHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNL---QEAVWDADIVINGLPS-TETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl---~eal~~aDiVIlaVps-~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+.....+. -..+..++.+++++++ ..+..++..+...+.+ +++++.+++.
T Consensus 52 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~iii~~st~ 105 (178)
T d1pgja2 52 -----------------------NLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEK---GDILVDTGNA 105 (178)
T ss_dssp -----------------------GEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCT---TCEEEECCCC
T ss_pred -----------------------chhhhhhhhHHHHhcccceEEEEeecCcchhhhhhhhhhhhccc---cceecccCcc
Confidence 12222222 2335667777777764 5777888888888876 6778777755
Q ss_pred ccccccccccCCCHHHHHHhHhCCCCcc---EEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHcCCCCe
Q 012349 200 VEAELEAVPRIITPTQMINRATGVPIEN---ILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRRPHFT 270 (465)
Q Consensus 200 i~~~~~~~~~~~~~se~I~e~lg~~~~~---i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~~~g~~ 270 (465)
.... +..+.+.+...... ..+..+|..|. .|. + ++++++++..++++.+|+.-+-+
T Consensus 106 ~~~~----------~~~~~~~l~~~~~~~ldapv~g~~~~a~---~g~-~-~mvgG~~~~~~~v~pil~~~~~~ 164 (178)
T d1pgja2 106 HFKD----------QGRRAQQLEAAGLRFLGMGISGGEEGAR---KGP-A-FFPGGTLSVWEEIRPIVEAAAAK 164 (178)
T ss_dssp CHHH----------HHHHHHHHHTTTCEEEEEEEESHHHHHH---HCC-E-EEEEECHHHHHHHHHHHHHHSCB
T ss_pred chhH----------HHHHHHHHhhcceeEecccccCCcchhc---CCc-E-EEeeCCHHHHHHHHHHHHHHhcc
Confidence 4332 12233333211111 12223333332 343 3 46778888888888888754433
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.63 E-value=1.2e-07 Score=85.80 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=58.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.+|..+|..|+ . | ++|+.||.+++.++.++ ++. .+.+-+++.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~-g-----~~V~g~Din~~~v~~l~---------~g~--------~p~~e~~l~----- 51 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-L-Q-----NEVTIVDILPSKVDKIN---------NGL--------SPIQDEYIE----- 51 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-T-T-----SEEEEECSCHHHHHHHH---------TTC--------CSSCCHHHH-----
T ss_pred CEEEEECCChhHHHHHHHHH-C-C-----CcEEEEECCHHHHHHHh---------hcc--------cccchhhHH-----
Confidence 89999999999999998886 5 6 89999999998777643 221 122222211
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~ 171 (465)
+++... ...+..+++...+..++|++++|||+.
T Consensus 52 ------~~~~~~---------~~~~~~~~~~~~~~~~~~ii~v~vpt~ 84 (196)
T d1dlja2 52 ------YYLKSK---------QLSIKATLDSKAAYKEAELVIIATPTN 84 (196)
T ss_dssp ------HHHHHS---------CCCEEEESCHHHHHHHCSEEEECCCCC
T ss_pred ------HHhhhh---------hhhhhccchhhhhhhccccccccCCcc
Confidence 111110 014566777777889999999999874
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.55 E-value=6.6e-07 Score=77.76 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=77.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+.|||+|||+|.+|+++|..|+.+ |.. .++.|+|++++.++. +.+ | ++. .....
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~-~~~---~elvL~D~~~~~~~g---~a~-D-l~~-----------a~~~~------ 57 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQ-GIA---EEFVIVDVVKDRTKG---DAL-D-LED-----------AQAFT------ 57 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHH---HHH-H-HHG-----------GGGGS------
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCC---cEEEEeecccchhHH---HHH-H-Hhc-----------ccccc------
Confidence 568999999999999999999998 632 589999998865432 100 0 110 00000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHhhh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWK 185 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~l~ 185 (465)
......+.|.++ +.+||+||++.... .++++.++|.++.+
T Consensus 58 -----------------------~~~~~~~~d~~~-~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p 113 (146)
T d1ez4a1 58 -----------------------APKKIYSGEYSD-CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGF 113 (146)
T ss_dssp -----------------------CCCEEEECCGGG-GTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTC
T ss_pred -----------------------CCceEeeccHHH-hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 012445677754 79999999987432 24455566665533
Q ss_pred ccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 186 ERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 186 ~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+++.++|-++. +...+++..|.|..+
T Consensus 114 ----~aivivvtNPvdv----------~t~~~~k~sg~p~~r 141 (146)
T d1ez4a1 114 ----DGIFLVAANPVDI----------LTYATWKFSGFPKER 141 (146)
T ss_dssp ----CSEEEECSSSHHH----------HHHHHHHHHCCCGGG
T ss_pred ----CcEEEEeCCccHH----------HHHHHHHHHCcCccc
Confidence 5788888876543 335667777755444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.52 E-value=6.7e-07 Score=77.84 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=80.0
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
.....||+|||+|.+|+++|..|+.+ |+. .++.|+|++++.++. +.+ | ++.. ..+..
T Consensus 3 ~~~~~KI~IiGaG~vG~~~a~~l~~~-~l~---~el~L~Di~~~~~~g---~a~-D-l~~~----------~~~~~---- 59 (148)
T d1ldna1 3 NNGGARVVVIGAGFVGASYVFALMNQ-GIA---DEIVLIDANESKAIG---DAM-D-FNHG----------KVFAP---- 59 (148)
T ss_dssp TTTSCEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHH---HHH-H-HHHH----------TTSSS----
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhc-CCC---ceEEEEeeccccccc---hhc-c-HhhC----------ccccC----
Confidence 34557999999999999999999998 642 479999998865432 110 0 1100 00000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEE-ecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHH
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKV-VTNLQEAVWDADIVINGLPST----------------ETKEVFEEISR 182 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~ 182 (465)
.+..+ +.|. +++.+||+||++.-.. .++++.++|.+
T Consensus 60 --------------------------~~~~~~~~d~-~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~ 112 (148)
T d1ldna1 60 --------------------------KPVDIWHGDY-DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMA 112 (148)
T ss_dssp --------------------------SCCEEEECCG-GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCeEEEECCH-HHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 12333 4455 5689999999976331 35666677776
Q ss_pred hhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 183 ~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+ +.+++.++|-++. +..++++..|.|.++
T Consensus 113 ~~p----~a~~ivvtNPvd~----------~t~~~~k~sg~p~~r 143 (148)
T d1ldna1 113 SGF----QGLFLVATNPVDI----------LTYATWKFSGLPHER 143 (148)
T ss_dssp HTC----CSEEEECSSSHHH----------HHHHHHHHHTCCGGG
T ss_pred hCC----CceEEEecCccHH----------HHHHHHHHHCcChhh
Confidence 654 5788888887654 335677777765445
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.49 E-value=1.1e-06 Score=77.04 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=81.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.+++||+|||+|.+|+.+|..++.+ +. .++.++|.+++.++.... | ++... .++.
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~-~~----~el~L~D~~~~~~~g~a~----D-l~~~~----------~~~~----- 59 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALR-EL----ADVVLYDVVKGMPEGKAL----D-LSHVT----------SVVD----- 59 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEECSSSSHHHHHHH----H-HHHHH----------HHTT-----
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CC----ceEEEEEeccccchhHHH----H-Hhhhc----------cccC-----
Confidence 3568999999999999999999888 63 479999998865542100 0 11000 0000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc------------c---------hHHHHHHH
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS------------T---------ETKEVFEE 179 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps------------~---------~l~~vl~~ 179 (465)
. + ..+..+++.+++++++|+|+++... . .+++++++
T Consensus 60 --~---------------~------~~~~~~~~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~ 116 (154)
T d1pzga1 60 --T---------------N------VSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQN 116 (154)
T ss_dssp --C---------------C------CCEEEECSHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHH
T ss_pred --C---------------e------eEEeccCchhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHH
Confidence 0 0 1356678888889999999997721 1 35666666
Q ss_pred HHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 180 ISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 180 l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.++.+ +.+++.++|-++.- ..++++..|.|.++
T Consensus 117 i~~~~p----~aiviivsNPvd~l----------t~~~~~~sg~p~~r 150 (154)
T d1pzga1 117 IKKYCP----KTFIIVVTNPLDCM----------VKVMCEASGVPTNM 150 (154)
T ss_dssp HHHHCT----TCEEEECCSSHHHH----------HHHHHHHHCCCGGG
T ss_pred HHhcCC----CcEEEEeCCcHHHH----------HHHHHHHhCcChhc
Confidence 666654 57888899877542 35667777755444
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.49 E-value=1.1e-06 Score=75.59 Aligned_cols=120 Identities=17% Similarity=0.225 Sum_probs=75.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.+|+++|..++.+ +.. .++.|+|++++.++. +.+ | ++.. ..+.+
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~-~l~---~el~L~Di~~~~~~g---~~~-D-l~~~----------~~~~~-------- 53 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMK-GFA---REMVLIDVDKKRAEG---DAL-D-LIHG----------TPFTR-------- 53 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHHH---HHH-H-HHHH----------GGGSC--------
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCC---CEEEEEecccccccc---hhc-c-cccc----------ccccc--------
Confidence 7999999999999999999988 642 489999999865442 111 0 0000 00000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-----c-----------hHHHHHHHHHHhhhcc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-----T-----------ETKEVFEEISRYWKER 187 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-----~-----------~l~~vl~~l~~~l~~~ 187 (465)
.....+.|. +++++||+|+++.-. + .++++++.|.++.+
T Consensus 54 ----------------------~~~~~~~~~-~~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p-- 108 (140)
T d1a5za1 54 ----------------------RANIYAGDY-ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-- 108 (140)
T ss_dssp ----------------------CCEEEECCG-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT--
T ss_pred ----------------------cccccCCcH-HHhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCC--
Confidence 012234454 568999999998622 1 25566666666654
Q ss_pred CCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+++.++|-++. +..++++..|.|..+
T Consensus 109 --~aivivvtNPvd~----------~t~~~~k~sg~p~~r 136 (140)
T d1a5za1 109 --DSIVIVVTNPVDV----------LTYFFLKESGMDPRK 136 (140)
T ss_dssp --TCEEEECSSSHHH----------HHHHHHHHHTCCTTT
T ss_pred --CcEEEEeCCcHHH----------HHHHHHHHHCcCccc
Confidence 5788888876653 335666766654444
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.47 E-value=3.4e-08 Score=93.10 Aligned_cols=198 Identities=17% Similarity=0.122 Sum_probs=118.2
Q ss_pred HHhHHHhhhhcCCCCCC-ceEEEECccH--HHHHHHH------HHHHhcCCCCCCeeEEEEecCchhh-hhhhh------
Q 012349 27 ERLDELRRLMGKAEGDP-LRIVGVGAGA--WGSVFTA------MLQDSYGYLRDKVLIRIWRRPGRSV-DRATA------ 90 (465)
Q Consensus 27 ~~~~~~~~~~~~~~~~~-mkIaIIGaGa--mGsalA~------~La~~~G~~~~~~~V~l~~r~~~~~-~~i~~------ 90 (465)
.|..+.....+.++..+ .++.++|+|. ||..++. .|++. | +.|++.+-+.+.+ +..+.
T Consensus 23 ~~~~~~~~~~~~~~~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~-g-----~~v~~~d~d~~~v~~~~~~g~~~i~ 96 (242)
T d2b0ja2 23 MRACEVAKEVGKPEIALTHSSITYGAELLHLVPDVKEVIVSDPCFAEE-P-----GLVVIDEFDPKEVMEAHLSGNPESI 96 (242)
T ss_dssp HHHHHHHHHHTCGGGGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSS-S-----EEEECCCSCHHHHHHHHHTTCGGGT
T ss_pred HHHHhhhccCCCCccceeeeeeeeeecHHhhhhchhhhhccchhhhhc-C-----CeEEEEeCCHHHHHHHHhcCCchhh
Confidence 45556666677777654 4588999997 7777777 47777 7 8999999886543 33221
Q ss_pred -hhhHHHHhchhhhHHhhhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC
Q 012349 91 -EHLFEVINSREDVLRRLIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP 169 (465)
Q Consensus 91 -~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp 169 (465)
.+|.+.+++.. ++.++..++.- + .+.|+ -..+++++|+.++++++|+||+|+|
T Consensus 97 ~p~l~~~v~~~~------~~~~~~~~~~~----~-~~~pE---------------e~Gv~v~~d~~Eav~~ADiII~~vP 150 (242)
T d2b0ja2 97 MPKIREVVKAKA------KELPKPPKACI----H-LVHPE---------------DVGLKVTSDDREAVEGADIVITWLP 150 (242)
T ss_dssp HHHHHHHHHHHH------HTSCCTTTEEE----E-SSCGG---------------GGTCEEESCHHHHHTTCSEEEECCT
T ss_pred cchHHHHHHHHH------HhccCCccchh----h-cCCHH---------------HCCCEEECCHHHHHhcCCeEEEeee
Confidence 12333333321 01111111100 0 01111 1258899999999999999999998
Q ss_pred c-chHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCc-hhhhhhccCceE
Q 012349 170 S-TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPN-IASEIYNKEYAN 247 (465)
Q Consensus 170 s-~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~-~a~ev~~g~~t~ 247 (465)
. +..++++++|.+++++ +++++.++. +... .+..+.+.+... .+.+++++. ...+ ..+. +.
T Consensus 151 ~~~~v~~Vi~~I~~~l~~---g~Iiid~ST-i~~~---------~~~~l~e~l~~k--gi~vi~~hp~a~pe-~~g~-~l 213 (242)
T d2b0ja2 151 KGNKQPDIIKKFADAIPE---GAIVTHACT-IPTT---------KFAKIFKDLGRE--DLNITSYHPGCVPE-MKGQ-VY 213 (242)
T ss_dssp TCTTHHHHHHHHGGGSCT---TCEEEECSS-SCHH---------HHHHHHHHTTCT--TSEEEECBCSSCTT-TCCC-EE
T ss_pred cHHHHHHHHHHHHhhCCC---CcEEEecCC-CcHH---------HHHHHHHhcccC--CCEEECCCccCcCc-cccc-eE
Confidence 5 5689999999999987 677766553 3322 123345555432 233444433 3332 2332 22
Q ss_pred EE-EeCChhHHHHHHHHHcCCCCeEEe
Q 012349 248 AR-ICGAEKWRKPLAKFLRRPHFTVWD 273 (465)
Q Consensus 248 ~~-~~~~~~~~~~l~~ll~~~g~~v~~ 273 (465)
+. ...+++..+.+.++|++.|-.++.
T Consensus 214 i~~~~aseE~iekv~elles~Gk~~~v 240 (242)
T d2b0ja2 214 IAEGYASEEAVNKLYEIGKIARGKAFK 240 (242)
T ss_dssp EEESSSCHHHHHHHHHHHHHHHSCEEE
T ss_pred EecCCCCHHHHHHHHHHHHHHCCCeEe
Confidence 22 235778889999999887765554
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.43 E-value=9.1e-08 Score=83.69 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=82.8
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcCC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGDR 124 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~~ 124 (465)
||+|||.|+||..||..|.++ | +. .+|+|+.++..+. ....
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~-g-----~~-~~~~~~~~~~~~~--------~~~~------------------------ 42 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARR-F-----PT-LVWNRTFEKALRH--------QEEF------------------------ 42 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTT-S-----CE-EEECSSTHHHHHH--------HHHH------------------------
T ss_pred eEEEEeHHHHHHHHHHHHHhC-C-----CE-EEEeCCHHHHHHH--------HHHc------------------------
Confidence 799999999999999999988 6 54 4788877543320 1000
Q ss_pred cccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 125 TLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
.. ..... +.+.++|++|+++|.. .+..+...+.+.+.+ ++++|.++. +.++
T Consensus 43 ----------------------~~-~~~~~-~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~~---~~~iid~sT-~~p~ 94 (156)
T d2cvza2 43 ----------------------GS-EAVPL-ERVAEARVIFTCLPTTREVYEVAEALYPYLRE---GTYWVDATS-GEPE 94 (156)
T ss_dssp ----------------------CC-EECCG-GGGGGCSEEEECCSSHHHHHHHHHHHTTTCCT---TEEEEECSC-CCHH
T ss_pred ----------------------CC-ccccc-ccccceeEEEecccchhhhhhhhccccccccc---ccccccccc-CCHH
Confidence 00 11222 3456799999999864 555566666666554 566665553 3332
Q ss_pred ccccccCCCHHHHHHhHhCCCCcc---EEEEeCCchhhhhhccCceEEEEeCChhHHHHHHHHHc
Q 012349 204 LEAVPRIITPTQMINRATGVPIEN---ILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLR 265 (465)
Q Consensus 204 ~~~~~~~~~~se~I~e~lg~~~~~---i~vlsGP~~a~ev~~g~~t~~~~~~~~~~~~~l~~ll~ 265 (465)
+ +..+.+.+...... ..+..||.-|. .|..+ ++++++++..++++.+|+
T Consensus 95 ~---------~~~~~~~~~~~gi~~ldapVsGg~~~A~---~G~L~-~~vgG~~~~~~~~~p~L~ 146 (156)
T d2cvza2 95 A---------SRRLAERLREKGVTYLDAPVSGGTSGAE---AGTLT-VMLGGPEEAVERVRPFLA 146 (156)
T ss_dssp H---------HHHHHHHHHTTTEEEEECCEESHHHHHH---HTCEE-EEEESCHHHHHHHGGGCT
T ss_pred H---------HHHHHHHHHHcCCeEEeccccCchhhhc---cCCEE-EEEeCCHHHHHHHHHHHH
Confidence 1 12233333211111 12334444343 56544 466888888888888883
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.39 E-value=1.7e-06 Score=74.78 Aligned_cols=122 Identities=12% Similarity=0.059 Sum_probs=76.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.+|+++|..++.+ |.+ .++.|+|++++.++. +. +.-.+ ..+.. +.
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~~~g---~a----lDl~~-----------~~~~~----~~ 54 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN-LDV---DEIALVDIAEDLAVG---EA----MDLAH-----------AAAGI----DK 54 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-SCC---SEEEEECSSHHHHHH---HH----HHHHH-----------HHHTT----TC
T ss_pred CEEEEECcCHHHHHHHHHHHhc-CcC---ceEEEEecccchhhH---HH----HHHhh-----------hcccc----CC
Confidence 8999999999999999999988 743 479999998865432 11 11000 00000 00
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc--c--------------hHHHHHHHHHHhhhcc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--T--------------ETKEVFEEISRYWKER 187 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps--~--------------~l~~vl~~l~~~l~~~ 187 (465)
+ ..+..++|.+ ++.++|+|+++.-. . .++++.+++.++.+
T Consensus 55 ---------------~------~~i~~~~d~~-~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p-- 110 (142)
T d1ojua1 55 ---------------Y------PKIVGGADYS-LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAP-- 110 (142)
T ss_dssp ---------------C------CEEEEESCGG-GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTST--
T ss_pred ---------------C------CccccCCCHH-HhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCC--
Confidence 0 1355667774 68999999997732 1 24444455554432
Q ss_pred CCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+++.++|-++. +..++++..|.|.++
T Consensus 111 --~aivivvtNPvD~----------~t~~~~k~sg~p~~r 138 (142)
T d1ojua1 111 --ESKILVVTNPMDV----------MTYIMWKESGKPRNE 138 (142)
T ss_dssp --TCEEEECSSSHHH----------HHHHHHHHSCCCTTS
T ss_pred --CcEEEEecCChHH----------HHHHHHHHHCCChhc
Confidence 5788889986543 234566666654444
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.37 E-value=3.2e-06 Score=73.28 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=33.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+||+|||+|.+|+++|..|+.. |.. .++.|++++++.++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~-~~~---~elvL~Di~~~~~~ 40 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ-GVA---DDYVFIDANEAKVK 40 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCC---SEEEEECSSHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhc-CCC---ceEEEEecccchhh
Confidence 6999999999999999999988 632 48999999886543
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.36 E-value=2.4e-06 Score=73.51 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=76.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
|||+|||+|.+|+++|..++.. |.. .++.|+|++++..+. +.+ + ++.. .. . ++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~-~l~---~el~L~Di~~~~~~~---~~~-d-~~~~-------------~~-~---~~~ 54 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEK-QLA---RELVLLDVVEGIPQG---KAL-D-MYES-------------GP-V---GLF 54 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSSSHHHH---HHH-H-HHTT-------------HH-H---HTC
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCC---ceEEEeccccccchh---hhh-h-hhcc-------------cc-h---hcc
Confidence 7999999999999999999988 642 489999999865442 110 0 1100 00 0 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Ccc--------------hHHHHHHHHHHhhhcc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PST--------------ETKEVFEEISRYWKER 187 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps~--------------~l~~vl~~l~~~l~~~ 187 (465)
+ ..+..++|. +++.++|+|+++. |.. .++++++.|.++.+
T Consensus 55 ---------------~------~~i~~~~~~-~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p-- 110 (142)
T d1guza1 55 ---------------D------TKVTGSNDY-ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSK-- 110 (142)
T ss_dssp ---------------C------CEEEEESCG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCS--
T ss_pred ---------------c------ceEEecCCH-HHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCC--
Confidence 0 134455665 5689999999986 221 25666666666643
Q ss_pred CCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+++.++|-++. +..++.+..|.|..+
T Consensus 111 --~aivivvtNPvd~----------~~~~~~~~sg~p~~r 138 (142)
T d1guza1 111 --NPIIIVVSNPLDI----------MTHVAWVRSGLPKER 138 (142)
T ss_dssp --SCEEEECCSSHHH----------HHHHHHHHHCSCGGG
T ss_pred --CeEEEEecCChHH----------HHHHHHHHhCCChHh
Confidence 5788888876543 235566666654444
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.30 E-value=4.1e-06 Score=72.18 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=76.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
+||+|||+|.+|+++|..|+.+ +. .++.+++.+++..+.. . ..-.+ .... ++.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~-~l----~dl~l~D~~~~~~~~~---~----~Dl~~------------~~~~---~~~ 54 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK-EL----GDIVLLDIVEGVPQGK---A----LDLYE------------ASPI---EGF 54 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECSSSSHHHHH---H----HHHHT------------THHH---HTC
T ss_pred CeEEEECCCHHHHHHHHHHHhC-Cc----ceEEEEeeccccchhH---H----HHhhc------------cccc---cCC
Confidence 6999999999999999999988 63 4799999988654321 0 11100 0000 000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHhhhcc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKER 187 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~l~~~ 187 (465)
+ ..+..+.|.++ +.++|+||++.-.. .+++++++|.++.+
T Consensus 55 ---------------~------~~i~~~~d~~~-~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p-- 110 (142)
T d1uxja1 55 ---------------D------VRVTGTNNYAD-TANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSP-- 110 (142)
T ss_dssp ---------------C------CCEEEESCGGG-GTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCT--
T ss_pred ---------------C------CEEEecCcHHH-hcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCC--
Confidence 0 14666788765 79999999988321 24555566655533
Q ss_pred CCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 188 ITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+++.++|-++.- ..++++..|.|..+
T Consensus 111 --~aivivvtNPvDv~----------t~~~~~~sglp~~r 138 (142)
T d1uxja1 111 --NAVIIMVNNPLDAM----------TYLAAEVSGFPKER 138 (142)
T ss_dssp --TCEEEECSSSHHHH----------HHHHHHHHCCCGGG
T ss_pred --CceEEEeCCchHHH----------HHHHHHHHCcCccc
Confidence 57888888766542 24566666655444
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.30 E-value=6.4e-06 Score=71.10 Aligned_cols=122 Identities=17% Similarity=0.275 Sum_probs=77.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
+.||+|||+|.+|+++|..++.+ |.. .++.|++++++.++. +. +.-.+. ..+.+
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~-~l~---~ElvL~D~~~~~~~g---~a----~Dl~~a--------~~~~~------- 54 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQR-GIA---REIVLEDIAKERVEA---EV----LDMQHG--------SSFYP------- 54 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSSHHHHHH---HH----HHHHHT--------GGGST-------
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCC---cEEEEEEeccccchh---HH----HHHHhc--------cccCC-------
Confidence 46999999999999999999988 743 489999998865432 11 110000 00110
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-----c-----------hHHHHHHHHHHhhhc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-----T-----------ETKEVFEEISRYWKE 186 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-----~-----------~l~~vl~~l~~~l~~ 186 (465)
. ..+..+++.+ ++.++|+|+++.=. + .++++.++|.++.+
T Consensus 55 ~----------------------~~i~~~~~~~-~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p- 110 (143)
T d1llda1 55 T----------------------VSIDGSDDPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAP- 110 (143)
T ss_dssp T----------------------CEEEEESCGG-GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-
T ss_pred C----------------------ceeecCCCHH-HhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCC-
Confidence 0 1345566765 58999999997722 1 35555566665543
Q ss_pred cCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 187 ~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+++.++|-++. +..++++..|.|.++
T Consensus 111 ---~ai~ivvtNPvDv----------mt~~~~~~sg~p~~r 138 (143)
T d1llda1 111 ---NAIYMLITNPVDI----------ATHVAQKLTGLPENQ 138 (143)
T ss_dssp ---TSEEEECCSSHHH----------HHHHHHHHHTCCTTS
T ss_pred ---CeEEEEeCCchHH----------HHHHHHHHHCCChhh
Confidence 5788888877654 336677777765445
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.26 E-value=2.5e-06 Score=75.81 Aligned_cols=83 Identities=23% Similarity=0.297 Sum_probs=52.1
Q ss_pred CceEEEECccHHHHHHHH--HHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTA--MLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~--~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
.|||+|||+|++|++++. .++...+ +. ..++.|+|+++++++.... .++. ..+..
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~-l~-~~eivL~Did~~~~~~~~~-----~~~~-------------~~~~~--- 58 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPG-LS-GSTVTLMDIDEERLDAILT-----IAKK-------------YVEEV--- 58 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGG-GT-TCEEEEECSCHHHHHHHHH-----HHHH-------------HHHHT---
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccc-cC-CCEEEEEeCCchHHHHHHH-----HHHH-------------HHHhc---
Confidence 489999999999987543 2433201 11 1589999999876653111 1111 01100
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps 170 (465)
+. + ..+..++|.++++.+||+|+.++-.
T Consensus 59 -~~---------------~------~~i~~~td~~eaL~dad~Vv~~~~~ 86 (171)
T d1obba1 59 -GA---------------D------LKFEKTMNLDDVIIDADFVINTAMV 86 (171)
T ss_dssp -TC---------------C------CEEEEESCHHHHHTTCSEEEECCCT
T ss_pred -CC---------------C------eEEEEeCChhhcccCCCeEeeeccc
Confidence 00 0 1477889999999999999998643
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.21 E-value=5.5e-06 Score=71.37 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.||+|||+|.+|+++|..++.+ +.. .++.|+|++++.++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~-~l~---~el~L~D~~~~~~~ 40 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALR-QTA---NELVLIDVFKEKAI 40 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-TCS---SEEEEECCC---CC
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeccCCccc
Confidence 5899999999999999999988 642 48999999986543
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.11 E-value=2.7e-05 Score=68.31 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=76.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
..||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++. +. .| ++.. ..+.+
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~-~l~---~ElvLiD~~~~~a~g---~a-lD-l~h~----------~~~~~------- 73 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGK-SLA---DELALVDVLEDKLKG---EM-MD-LQHG----------SLFLQ------- 73 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHT-TCC---SEEEEECSCHHHHHH---HH-HH-HHHT----------GGGCC-------
T ss_pred CCeEEEECCCHHHHHHHHHHHhc-CCC---cEEEEEEeccchhHH---HH-HH-Hhcc----------ccccC-------
Confidence 36999999999999999999998 743 479999998765432 11 01 1100 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc----------------hHHHHHHHHHHhhhc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST----------------ETKEVFEEISRYWKE 186 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~----------------~l~~vl~~l~~~l~~ 186 (465)
. ..+....|. +.+.+||+|+++.-.. .++++.++|+++.+
T Consensus 74 ~----------------------~~~~~~~d~-~~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p- 129 (160)
T d1i0za1 74 T----------------------PKIVADKDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSP- 129 (160)
T ss_dssp C----------------------SEEEECSSG-GGGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-
T ss_pred C----------------------CeEEeccch-hhcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 0 123344555 4589999999976221 35555666666533
Q ss_pred cCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 187 RITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 187 ~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
+.+++.++|-++. +..++++..|.|..+
T Consensus 130 ---~aiiivvtNPvDv----------~t~~~~k~sglp~~r 157 (160)
T d1i0za1 130 ---DCIIIVVSNPVDI----------LTYVTWKLSGLPKHR 157 (160)
T ss_dssp ---TCEEEECSSSHHH----------HHHHHHHHHCCCGGG
T ss_pred ---CcEEEEeCCchHH----------HHHHHHHHHCcCccc
Confidence 5788889987654 335667777755444
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.07 E-value=2.8e-05 Score=67.45 Aligned_cols=122 Identities=19% Similarity=0.281 Sum_probs=76.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++||+|||+|.+|+++|..++.+ +. .++.|+|++++.++.... | ++.. ..+..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~-~l----~el~L~Di~~~~~~g~a~----D-l~~~-----------~~~~~------ 55 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQK-NL----GDVVLFDIVKNMPHGKAL----D-TSHT-----------NVMAY------ 55 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TC----CEEEEECSSSSHHHHHHH----H-HHTH-----------HHHHT------
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CC----CeEEEEeccCCcceeeec----c-hhhh-----------ccccC------
Confidence 47999999999999999988877 52 479999998865442100 0 1110 00000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc--c-------------------hHHHHHHHHH
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS--T-------------------ETKEVFEEIS 181 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps--~-------------------~l~~vl~~l~ 181 (465)
. + ..+..+.+. +++.++|+|+++.-. . .++++.+.++
T Consensus 56 ~---------------~------~~v~~~~~~-~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~ 113 (150)
T d1t2da1 56 S---------------N------CKVSGSNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIK 113 (150)
T ss_dssp C---------------C------CCEEEECCG-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHH
T ss_pred C---------------C------cEEEecccc-cccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHH
Confidence 0 0 124444455 458999999997631 1 2555556666
Q ss_pred HhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCcc
Q 012349 182 RYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIEN 227 (465)
Q Consensus 182 ~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~ 227 (465)
++.+ +.+++.++|-++. +..++++..|.|.++
T Consensus 114 ~~~p----~aivivvtNPvD~----------~t~~~~~~sg~p~~r 145 (150)
T d1t2da1 114 KNCP----NAFIIVVTNPVDV----------MVQLLHQHSGVPKNK 145 (150)
T ss_dssp HHCT----TSEEEECSSSHHH----------HHHHHHHHHCCCGGG
T ss_pred hcCC----CeEEEEecCchHH----------HHHHHHHHHCCCchh
Confidence 6543 5788888987654 335677776655445
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.01 E-value=2.4e-05 Score=69.09 Aligned_cols=123 Identities=12% Similarity=0.135 Sum_probs=73.0
Q ss_pred CceEEEECccHHH--HHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWG--SVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamG--salA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+|||+|||||+.| .+++..+... ..+. ..++.|+|.+++.... +. +...+ ..+....
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~-~~~~-~~eI~L~Di~e~~~~~---~~----~d~~~---------~~~~~~~--- 59 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRY-HELP-VGELWLVDIPEGKEKL---EI----VGALA---------KRMVEKA--- 59 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTT-TTCC-EEEEEEECCGGGHHHH---HH----HHHHH---------HHHHHHT---
T ss_pred CcEEEEECCChhhHHHHHHHHHHhc-cccC-CCEEEEEcCCccHHHH---HH----HHHHH---------HHHHHhc---
Confidence 4899999999766 4555555543 1111 1489999998753221 11 11100 0011110
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcch----------------------------
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTE---------------------------- 172 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~---------------------------- 172 (465)
.. + ..+..++|..+++++||+||++.....
T Consensus 60 ----~~------------~------~~~~~~td~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~ 117 (169)
T d1s6ya1 60 ----GV------------P------IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLF 117 (169)
T ss_dssp ----TC------------C------CEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHH
T ss_pred ----CC------------C------ceeeecCCchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhh
Confidence 00 0 146678999899999999999985322
Q ss_pred --------HHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhC
Q 012349 173 --------TKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222 (465)
Q Consensus 173 --------l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg 222 (465)
++++++++.++.+ +++++.++|-++. +...+.+.+|
T Consensus 118 ~~~~n~~i~~~i~~~i~~~~p----da~~i~vtNPvdv----------~t~~~~k~~p 161 (169)
T d1s6ya1 118 KGLRTIPVILDIIRDMEELCP----DAWLINFTNPAGM----------VTEAVLRYTK 161 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT----TCEEEECSSSHHH----------HHHHHHHHCC
T ss_pred hccccHHHHHHHHHHHhhcCC----CeEEEEeCChHHH----------HHHHHHHHCC
Confidence 4566666766644 5788888876653 2355666664
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.95 E-value=5.5e-05 Score=65.20 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=30.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||+|||| |.+|+++|..++.. |.. .++.|++++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~-~l~---~el~L~D~~~~ 37 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE-PFM---KDLVLIGREHS 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC-TTC---CEEEEEECGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhC-Ccc---cccccccchhh
Confidence 79999996 99999999999987 632 48999999864
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.95 E-value=3e-05 Score=67.92 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=33.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+.||+|||+|.+|+++|..|+.. |.. .++.|+|++++.++
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~-~l~---~elvL~D~~~~~a~ 58 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLK-GLA---DELALVDADTDKLR 58 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTT-TSC---SEEEEECSCHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc-CCC---CEEEEEeCCchhhh
Confidence 346999999999999999999987 632 48999999876543
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=2.8e-05 Score=64.91 Aligned_cols=118 Identities=9% Similarity=-0.023 Sum_probs=73.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHHhCCCcchhccC-chhhhhhcccCchhH-HH
Q 012349 276 DLVTHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFAHCTSEMVFITHLLAEEPEKLAGP-LLADTYVTLLKGRNA-WY 353 (465)
Q Consensus 276 Di~gve~~galKNviAia~Gi~~gl~~g~~n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~-glgDl~~T~~~sRN~-~~ 353 (465)
||.+..|.|.+.|..-.+...+.+..+|.-.....++.+.+.|+..++++.|......... -+-++.-. .+.++ ++
T Consensus 1 dI~~~~W~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~~l~~E~~~va~a~g~~~~~~~~~~~~~~~~~~--~~~~~sSM 78 (124)
T d1ks9a1 1 NIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDA--TAENISSM 78 (124)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH--TTTCCCHH
T ss_pred CHHHHHHHHHHHHHhHhHHHHHhCCCchHHHhCHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc--cCCCCChH
Confidence 7889999999999865555555555544211112578899999999999999865322100 01111000 01111 24
Q ss_pred HHHHhcCCChhhHhHhhcCCcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc
Q 012349 354 GQELAKGRLTLDLGDSIKGKGMIQGISAVKAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM 423 (465)
Q Consensus 354 G~~l~~g~~~~~~~~~~~~~~~vEG~~t~~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~ 423 (465)
-+++.+|+.+ .+|-+.. .++++++++|+ + +|+++++|.++..
T Consensus 79 ~qD~~~gr~t-----------Eid~i~G--~vv~~a~~~gi--------------~-tP~~~~l~~lik~ 120 (124)
T d1ks9a1 79 LQDIRALRHT-----------EIDYING--FLLRRARAHGI--------------A-VPENTRLFEMVKR 120 (124)
T ss_dssp HHHHHTTCCC-----------SGGGTHH--HHHHHHHHHTC--------------C-CHHHHHHHHHHHH
T ss_pred HHHHHcCCcc-----------hHHHHHH--HHHHHHHHhCC--------------C-CcHHHHHHHHHHH
Confidence 4444444432 2444444 89999999995 6 8999999999864
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.92 E-value=2.4e-05 Score=69.09 Aligned_cols=122 Identities=13% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCceEEEECccHHHHHHH--HHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFT--AMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA--~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+..||+|||+|+.|+..+ ..+... -.+. ..++.|+|.++++++.. .+.++.. ....
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~-~~l~-~~eivL~Did~~~~~~~-----~~~~~~~-------------~~~~-- 59 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHL-EEFP-IRKLKLYDNDKERQDRI-----AGACDVF-------------IREK-- 59 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTT-TTSC-EEEEEEECSCHHHHHHH-----HHHHHHH-------------HHHH--
T ss_pred CCceEEEECCChhhhHHHHHHHHhhh-hhcC-CCEEEEEcCChhHHHHH-----HHHHHHH-------------HHHh--
Confidence 347999999999887644 333322 1111 14899999998765521 1111111 1100
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-----------------------------
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------------------- 170 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------------------------- 170 (465)
+. . ..+..++|..+++++||+||++.-.
T Consensus 60 --~~-~--------------------~~~~~~~d~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~ 116 (167)
T d1u8xx1 60 --AP-D--------------------IEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGI 116 (167)
T ss_dssp --CT-T--------------------SEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHH
T ss_pred --CC-C--------------------cceEecCChhhccCCCCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcch
Confidence 00 0 1467789999999999999999742
Q ss_pred -------chHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhC
Q 012349 171 -------TETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATG 222 (465)
Q Consensus 171 -------~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg 222 (465)
..+.++++++.++.+ +.+++..+|-++. ++..+.+.+|
T Consensus 117 ~~~~r~i~ii~~i~~~i~~~~P----~A~li~~TNPvdv----------~t~~~~k~~P 161 (167)
T d1u8xx1 117 AYGMRSIGGVLEILDYMEKYSP----DAWMLNYSNPAAI----------VAEATRRLRP 161 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT----TCEEEECCSCHHH----------HHHHHHHHST
T ss_pred heehhhHHHHHHHHHHHHhhCC----CeEEEEeCCHHHH----------HHHHHHHHCC
Confidence 224566666666654 5788888886654 3356666664
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.89 E-value=2.6e-05 Score=67.22 Aligned_cols=104 Identities=12% Similarity=0.116 Sum_probs=66.9
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhcC
Q 012349 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLGD 123 (465)
Q Consensus 45 kIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~~ 123 (465)
||+|||| |.+|+++|..|+.+ |.. .++.|++.++...+. +.-.+ ......
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~-~~~---~elvLiDi~~~~~~a---------~Dl~~---------~~~~~~------- 52 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNS-PLV---SRLTLYDIAHTPGVA---------ADLSH---------IETRAT------- 52 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTC-TTC---SEEEEEESSSHHHHH---------HHHTT---------SSSSCE-------
T ss_pred eEEEECCCChHHHHHHHHHHhC-Ccc---ceEEEEeccccchhh---------HHHhh---------hhhhcC-------
Confidence 8999996 99999999999987 643 479999987643221 11000 000000
Q ss_pred CcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecC--c--------------chHHHHHHHHHHhhhcc
Q 012349 124 RTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLP--S--------------TETKEVFEEISRYWKER 187 (465)
Q Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVp--s--------------~~l~~vl~~l~~~l~~~ 187 (465)
. ......++..+++++||+||++-- . ..++++.+.+.++-+
T Consensus 53 --~-------------------~~~~~~~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-- 109 (144)
T d1mlda1 53 --V-------------------KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-- 109 (144)
T ss_dssp --E-------------------EEEESGGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT--
T ss_pred --C-------------------CeEEcCCChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC--
Confidence 0 011224566677899999999753 2 136677777777643
Q ss_pred CCCCEEEEeeccccc
Q 012349 188 ITVPVIISLAKGVEA 202 (465)
Q Consensus 188 ~~~~ivIs~~kGi~~ 202 (465)
+.+++.++|-++.
T Consensus 110 --~~iiivvtNPvD~ 122 (144)
T d1mlda1 110 --DAMICIISNPVNS 122 (144)
T ss_dssp --TSEEEECSSCHHH
T ss_pred --CeEEEEecCchhh
Confidence 5788889987764
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.88 E-value=8.9e-06 Score=70.50 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=34.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+||.|||||.||..+|..|+++ | ++|++|+|+.+.++.
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~-g-----~~V~v~dr~~~~a~~ 40 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS-G-----IKVTVACRTLESAKK 40 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-C-----CEEEEEECChHHHHH
Confidence 6899999999999999999999 7 999999999876654
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.83 E-value=4.6e-05 Score=66.73 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=50.1
Q ss_pred ceEEEECccHHHHHHHHH-HHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAM-LQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~-La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
|||+|||+|+.|++++.. +++....+. ..++.|+|.++++++.. .+.... ....
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~-~~el~L~Did~~k~~~~-----~d~~~~--------------~~~~----- 55 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVR-IDEVIFYDIDEEKQKIV-----VDFVKR--------------LVKD----- 55 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSC-CCEEEEECSCHHHHHHH-----HHHHHH--------------HHTT-----
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccC-ccEEEEEecCcHHHHHH-----HHHHHh--------------hhcc-----
Confidence 799999999988877744 333211011 15899999998754421 011100 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS 170 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps 170 (465)
. .++.++++..+++++||+||++.-.
T Consensus 56 --~--------------------~~~~~t~~~~~~l~~aDvVVita~~ 81 (162)
T d1up7a1 56 --R--------------------FKVLISDTFEGAVVDAKYVIFQFRP 81 (162)
T ss_dssp --S--------------------SEEEECSSHHHHHTTCSEEEECCCT
T ss_pred --C--------------------ceEEEecCcccccCCCCEEEEeccc
Confidence 0 1466788888999999999998743
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.82 E-value=7.5e-05 Score=64.68 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=74.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCC--eeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~--~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
.+|||+|||| |.+|+++|..|+.. +.|... .+..+++.++.... .+.+. +... ...+ +.
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~-~~~~~~~~~~L~l~d~~~~~~~---~~~l~--~~~~---------~~~~-~~-- 63 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNG-SVFGKDQPIILVLLDITPMMGV---LDGVL--MELQ---------DCAL-PL-- 63 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTT-TTTCTTCCEEEEEECCGGGHHH---HHHHH--HHHH---------HTCC-TT--
T ss_pred CceEEEEECCCCHHHHHHHHHHHHH-HhcCCCCccEEEEecCccchhh---hhhhh--hhhc---------cccc-cc--
Confidence 4689999996 99999999999875 443211 34666666543211 11110 1000 0000 00
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc----------------chHHHHHHHHHH
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS----------------TETKEVFEEISR 182 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps----------------~~l~~vl~~l~~ 182 (465)
...+..+++..++++++|+||++--. ..++++.+.|.+
T Consensus 64 --------------------------~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k 117 (154)
T d5mdha1 64 --------------------------LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDK 117 (154)
T ss_dssp --------------------------EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred --------------------------ccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHh
Confidence 01356678888899999999997622 135555666665
Q ss_pred hhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHh-CCCCccE
Q 012349 183 YWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRAT-GVPIENI 228 (465)
Q Consensus 183 ~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~l-g~~~~~i 228 (465)
+.+. +.+++.++|-++. +..+++++. |.|..++
T Consensus 118 ~a~~---~~~iivvsNPvD~----------mt~v~~k~s~g~P~~~v 151 (154)
T d5mdha1 118 YAKK---SVKVIVVGNPANT----------NCLTASKSAPSIPKENF 151 (154)
T ss_dssp HSCT---TCEEEECSSSHHH----------HHHHHHHTCTTSCGGGE
T ss_pred hCCC---ceEEEEecCcHHH----------HHHHHHHHcCCCCHHHE
Confidence 5443 3456667775543 224455655 5554443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.82 E-value=2.6e-05 Score=65.48 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=35.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
|||.|+|+|.+|..+|..|.+. | ++|++++.+++.+++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~-g-----~~v~vid~d~~~~~~ 38 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK-G-----HDIVLIDIDKDICKK 38 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CCcceecCChhhhhh
Confidence 8999999999999999999988 7 899999999987664
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.76 E-value=3.8e-05 Score=64.25 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=34.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+++.|+|+|.+|..+|..|.+. | ++|++++.+++.+++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~-g-----~~vvvid~d~~~~~~ 38 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM-G-----HEVLAVDINEEKVNA 38 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC-C-----CeEEEecCcHHHHHH
Confidence 4789999999999999999998 7 999999999987664
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.70 E-value=4e-05 Score=66.97 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=39.6
Q ss_pred HHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 30 ~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+..++.++.. ..++|.|||+|.||..++..|... |. .++++|.|+.++++
T Consensus 13 ~la~~~~~~l--~~~~ilviGaG~~g~~v~~~L~~~-g~----~~i~v~nRt~~ka~ 62 (159)
T d1gpja2 13 ELAERELGSL--HDKTVLVVGAGEMGKTVAKSLVDR-GV----RAVLVANRTYERAV 62 (159)
T ss_dssp HHHHHHHSCC--TTCEEEEESCCHHHHHHHHHHHHH-CC----SEEEEECSSHHHHH
T ss_pred HHHHHHhCCc--ccCeEEEECCCHHHHHHHHHHHhc-CC----cEEEEEcCcHHHHH
Confidence 3456666543 557999999999999999999998 72 47999999976554
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.61 E-value=0.00043 Score=59.17 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=29.2
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+||| +|.+|+++|..++.+ +.. .++.|++.+.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~-~l~---~el~L~Di~~ 36 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALR-DIA---DEVVFVDIPD 36 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCC---SEEEEECCGG
T ss_pred CeEEEECCCCcHHHHHHHHHHhC-CCC---CEEEEEecCC
Confidence 3899999 699999999999988 643 4799999753
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.59 E-value=0.00039 Score=59.96 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.1
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDS 65 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~ 65 (465)
++|||+|||| |.+|+++|..|+..
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~ 27 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAG 27 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc
Confidence 5689999997 99999999999976
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=0.00033 Score=60.06 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=28.4
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||+||| +|.+|+++|..|+.+.+.. .++.+++.++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~---~el~L~D~~~ 37 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSG---SELSLYDIAP 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTT---CEEEEECSST
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCC---cEEEEecccc
Confidence 8999999 5999999999887541211 5899999864
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.52 E-value=6e-05 Score=67.25 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=63.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
.-++|+|||.|.+|..+|..+..- | .+|..|+|++... +
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~-g-----~~v~~~d~~~~~~-----------------------------~------ 79 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAAL-G-----AQVRGFSRTPKEG-----------------------------P------ 79 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHT-T-----CEEEEECSSCCCS-----------------------------S------
T ss_pred cCceEEEeccccccccceeeeecc-c-----ccccccccccccc-----------------------------c------
Confidence 347899999999999999998766 6 7999998865210 0
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
.....++++.+.++|+|++++|-. .++.++ ++.-..+++ ++++|.++-|
T Consensus 80 --------------------------~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~---~ailIN~~RG 130 (181)
T d1qp8a1 80 --------------------------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAE---DAVFVNVGRA 130 (181)
T ss_dssp --------------------------SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCT---TCEEEECSCG
T ss_pred --------------------------eeeeechhhhhhccchhhcccccccccccccccceeeeccc---cceEEecccc
Confidence 011246778899999999999953 343333 233344555 7899999888
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.38 E-value=0.00023 Score=62.27 Aligned_cols=89 Identities=13% Similarity=0.200 Sum_probs=57.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++||+|||+|.||..++..+... . +.+ |-+++++++....
T Consensus 3 kirvgiiG~G~ig~~~~~~l~~~-~----~~elvav~~~~~~~~~~---------------------------------- 43 (170)
T d1f06a1 3 NIRVAIVGYGNLGRSVEKLIAKQ-P----DMDLVGIFSRRATLDTK---------------------------------- 43 (170)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTC-S----SEEEEEEEESSSCCSSS----------------------------------
T ss_pred cceEEEECChHHHHHHHHHHHhC-C----CcEEEEEEecccccccc----------------------------------
Confidence 47999999999999999888765 2 144 4466766532110
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.......+..+...+.|+|++|+|+....+++.+. +.. +..+|.+.+..
T Consensus 44 ------------------------~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~~a---L~a---G~~vv~~~~~~ 92 (170)
T d1f06a1 44 ------------------------TPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPK---FAQ---FACTVDTYDNH 92 (170)
T ss_dssp ------------------------SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHH---HTT---TSEEECCCCCG
T ss_pred ------------------------cccccchhhhhhccccceEEEeCCCcccHHHHHHH---HHC---CCcEEEecCcc
Confidence 01233445555667899999999999776665544 333 34556555443
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00025 Score=61.30 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=59.5
Q ss_pred CceEEEECccHHHHH-HHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
+|||+|||+|.||.- ....+... . +.+ +.+++++++..+.+ .+. |
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~-~----~~~i~~v~d~~~~~~~~~---------~~~------------~------- 47 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAA-S----DWTLQGAWSPTRAKALPI---------CES------------W------- 47 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSC-S----SEEEEEEECSSCTTHHHH---------HHH------------H-------
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhC-C----CcEEEEEEechhHhhhhh---------hhc------------c-------
Confidence 479999999999975 45555543 2 144 45788887654421 100 0
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
++...++.++.+.+.|+|++|+|+....+++...... +..| .+-|-+
T Consensus 48 --------------------------~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~al~~------gk~V-~~EKPl 94 (164)
T d1tlta1 48 --------------------------RIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNA------GVHV-CVDKPL 94 (164)
T ss_dssp --------------------------TCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHHHHHT------TCEE-EEESSS
T ss_pred --------------------------cccccccchhhhhhcccccccccchhccccccccccc------ccee-eccccc
Confidence 1113456667778899999999998877777765432 3333 466655
Q ss_pred cc
Q 012349 201 EA 202 (465)
Q Consensus 201 ~~ 202 (465)
..
T Consensus 95 a~ 96 (164)
T d1tlta1 95 AE 96 (164)
T ss_dssp CS
T ss_pred cC
Confidence 44
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.36 E-value=0.00042 Score=60.96 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=62.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
++||+|||+|.||...+..+... . +.+|+ +++++++..+.. .+.. ..+
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~-~----~~~i~ai~d~~~~~~~~~--------~~~~------------~~~------ 49 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLA-P----NATISGVASRSLEKAKAF--------ATAN------------NYP------ 49 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHH--------HHHT------------TCC------
T ss_pred CeEEEEEcCCHHHHHHHHHHHhC-C----CCEEEEEEeCCccccccc--------hhcc------------ccc------
Confidence 37999999999999999888765 2 25555 778887644321 1100 011
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh--cCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV--WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal--~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
...++.+|.++.+ .+.|+|++|+|+....+.+....+ . +..| .+-|-
T Consensus 50 ------------------------~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~~~~~~l~---~---g~~v-~~EKP 98 (184)
T d1ydwa1 50 ------------------------ESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAE---K---GKHI-LLEKP 98 (184)
T ss_dssp ------------------------TTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHT---T---TCEE-EECSS
T ss_pred ------------------------cceeecCcHHHhhhccccceeeecccchhhcchhhhhhh---c---ccee-ecccc
Confidence 1245678888876 457999999999877777666543 2 3333 46665
Q ss_pred ccc
Q 012349 200 VEA 202 (465)
Q Consensus 200 i~~ 202 (465)
+..
T Consensus 99 ~~~ 101 (184)
T d1ydwa1 99 VAM 101 (184)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00021 Score=63.83 Aligned_cols=93 Identities=17% Similarity=0.263 Sum_probs=64.4
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+...++|+|||.|.+|..+|..+..- | .+|..|++..... ..
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~----------------------------~~---- 82 (188)
T d1sc6a1 41 EARGKKLGIIGYGHIGTQLGILAESL-G-----MYVYFYDIENKLP----------------------------LG---- 82 (188)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCCC----------------------------CT----
T ss_pred cccceEEEEeecccchhhhhhhcccc-c-----ceEeeccccccch----------------------------hh----
Confidence 34557999999999999999988655 5 7899998764210 00
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHH-HHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVF-EEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl-~~l~~~l~~~~~~~ivIs~~ 197 (465)
......++++.++.+|+|++++|- ..++.++ ++....+++ ++++|.++
T Consensus 83 ---------------------------~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~---~a~lIN~a 132 (188)
T d1sc6a1 83 ---------------------------NATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP---GSLLINAS 132 (188)
T ss_dssp ---------------------------TCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCT---TEEEEECS
T ss_pred ---------------------------hhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCC---CCEEEEcC
Confidence 112235688889999999999984 3444433 333444555 68899988
Q ss_pred ccc
Q 012349 198 KGV 200 (465)
Q Consensus 198 kGi 200 (465)
-|=
T Consensus 133 RG~ 135 (188)
T d1sc6a1 133 RGT 135 (188)
T ss_dssp CSS
T ss_pred cHH
Confidence 883
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.26 E-value=0.0022 Score=56.51 Aligned_cols=114 Identities=10% Similarity=0.056 Sum_probs=67.5
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCC--eeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDK--VLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVE 118 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~--~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~ 118 (465)
++.||+|+|| |.+|..++..|+.. ..|... .++.+++.++.. +.+ +++. ++-. ... .+.
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g-~v~g~~~~i~L~L~di~~~~-~~l--~g~~--mdl~---------d~a-~~~-- 84 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASG-EVFGQDQPIALKLLGSERSF-QAL--EGVA--MELE---------DSL-YPL-- 84 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHT-TTTCTTCCEEEEEECCGGGH-HHH--HHHH--HHHH---------TTT-CTT--
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcC-cccCCCceEEEEEecCcccc-chh--cchh--hhhc---------ccc-ccc--
Confidence 4469999996 99999999999875 433211 255666665421 110 1110 0000 000 000
Q ss_pred hhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEec--Cc---c-----------hHHHHHHHHHH
Q 012349 119 ARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGL--PS---T-----------ETKEVFEEISR 182 (465)
Q Consensus 119 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaV--ps---~-----------~l~~vl~~l~~ 182 (465)
+..+..+++..+++.++|+||++- |. + .++++.+.|.+
T Consensus 85 --------------------------~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~ 138 (175)
T d7mdha1 85 --------------------------LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNA 138 (175)
T ss_dssp --------------------------EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 014567888889999999999976 21 1 25566666666
Q ss_pred hhhccCCCCEEEEeeccccc
Q 012349 183 YWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 183 ~l~~~~~~~ivIs~~kGi~~ 202 (465)
+.++ +.+|+.++|-++.
T Consensus 139 ~a~~---~~~vlvv~NPvd~ 155 (175)
T d7mdha1 139 VASK---NVKVLVVGNPCNT 155 (175)
T ss_dssp HSCT---TCEEEECSSSHHH
T ss_pred hCCC---CcEEEEecCcHHH
Confidence 6554 5777778876543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.25 E-value=0.00037 Score=62.13 Aligned_cols=98 Identities=19% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 40 EGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+...++|+|||.|.+|..+|..+..- | .+|..|++....... ...
T Consensus 41 ~l~~~~vgiiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~~--------------------------~~~--- 85 (188)
T d2naca1 41 DLEAMHVGTVAAGRIGLAVLRRLAPF-D-----VHLHYTDRHRLPESV--------------------------EKE--- 85 (188)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHGGG-T-----CEEEEECSSCCCHHH--------------------------HHH---
T ss_pred eccccceeeccccccchhhhhhhhcc-C-----ceEEEEeeccccccc--------------------------ccc---
Confidence 33557999999999999999999755 5 789999986521110 000
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEee
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLA 197 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~ 197 (465)
..+....++++.++.+|+|++++|-. .++.++ ++.-..+++ ++++|.++
T Consensus 86 --------------------------~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~---ga~lIN~a 136 (188)
T d2naca1 86 --------------------------LNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR---GAYIVNTA 136 (188)
T ss_dssp --------------------------HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCT---TEEEEECS
T ss_pred --------------------------ccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCC---CCEEEecC
Confidence 02334567888899999999999954 344444 233344555 68899998
Q ss_pred cccc
Q 012349 198 KGVE 201 (465)
Q Consensus 198 kGi~ 201 (465)
-|=.
T Consensus 137 RG~i 140 (188)
T d2naca1 137 RGKL 140 (188)
T ss_dssp CGGG
T ss_pred chhh
Confidence 8833
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.21 E-value=0.00033 Score=62.90 Aligned_cols=97 Identities=12% Similarity=0.088 Sum_probs=65.9
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
-.-++|+|||.|.+|..+|..+..- | .+|..|++....-. ...
T Consensus 47 L~gktvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~---------------------------~~~---- 89 (193)
T d1mx3a1 47 IRGETLGIIGLGRVGQAVALRAKAF-G-----FNVLFYDPYLSDGV---------------------------ERA---- 89 (193)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCTTH---------------------------HHH----
T ss_pred eeCceEEEeccccccccceeeeecc-c-----cceeeccCcccccc---------------------------hhh----
Confidence 3447999999999999999999755 6 78999988653110 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~k 198 (465)
.++....++++.+..+|+|++++|-. .++.++ ++.-..+++ ++++|.++-
T Consensus 90 -------------------------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~sR 141 (193)
T d1mx3a1 90 -------------------------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQ---GAFLVNTAR 141 (193)
T ss_dssp -------------------------HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCT---TEEEEECSC
T ss_pred -------------------------hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCC---CCeEEecCC
Confidence 02334567888899999999999943 333333 223334555 688998888
Q ss_pred cccc
Q 012349 199 GVEA 202 (465)
Q Consensus 199 Gi~~ 202 (465)
|=..
T Consensus 142 G~iv 145 (193)
T d1mx3a1 142 GGLV 145 (193)
T ss_dssp TTSB
T ss_pred ceEE
Confidence 8433
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.14 E-value=0.00029 Score=63.49 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=63.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
..++|+|||.|.+|..+|..+..- | .+|..|++..... ...
T Consensus 44 ~~ktvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~---------------------------~~~------ 84 (199)
T d1dxya1 44 GQQTVGVMGTGHIGQVAIKLFKGF-G-----AKVIAYDPYPMKG---------------------------DHP------ 84 (199)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCSS---------------------------CCT------
T ss_pred cceeeeeeeccccccccccccccc-c-----eeeeccCCccchh---------------------------hhc------
Confidence 347999999999999999999755 6 7899998764210 000
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeecc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kG 199 (465)
... ..++++.+..+|+|++++|.. .++.++ ++.-..+++ ++++|.++-|
T Consensus 85 -------------------------~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~aRG 135 (199)
T d1dxya1 85 -------------------------DFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP---GAIVINTARP 135 (199)
T ss_dssp -------------------------TCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCT---TEEEEECSCT
T ss_pred -------------------------chh-HHHHHHHHHhcccceeeecccccccccccHHHhhccCC---ceEEEecccH
Confidence 122 246778889999999999853 333333 223334555 6889988887
Q ss_pred ccc
Q 012349 200 VEA 202 (465)
Q Consensus 200 i~~ 202 (465)
=..
T Consensus 136 ~vv 138 (199)
T d1dxya1 136 NLI 138 (199)
T ss_dssp TSB
T ss_pred hhh
Confidence 433
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.13 E-value=0.00048 Score=59.65 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=27.4
Q ss_pred ceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
|||+|||+|.||.. ....+.+. + +.++.+++++++..+
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-~----~~~~~~~d~~~~~~~ 40 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-P----DIELVLCTRNPKVLG 40 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-T----TEEEEEECSCHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-C----CcEEEEEECCHHHHH
Confidence 79999999999975 45555544 2 257778888876443
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=97.11 E-value=0.0014 Score=54.91 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=41.1
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchh
Q 012349 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIA 237 (465)
Q Consensus 159 ~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a 237 (465)
.++|+||=.+.+..+.+.++....+ +.++|+-|.|++.+. .+.+++... .+.++..||+.
T Consensus 40 ~~~DVvIDFS~p~~~~~~l~~~~~~------~~p~ViGTTG~~~~~---------~~~i~~~ak----~~pv~~a~N~s 99 (128)
T d1vm6a3 40 DSPDVVIDFSSPEALPKTVDLCKKY------RAGLVLGTTALKEEH---------LQMLRELSK----EVPVVQAYSRT 99 (128)
T ss_dssp SCCSEEEECSCGGGHHHHHHHHHHH------TCEEEECCCSCCHHH---------HHHHHHHTT----TSEEEECSCTH
T ss_pred ccCCEEEEecCHHHHHHHHHHHHhc------CCCEEEEcCCCCHHH---------HHHHHHHHh----hCCEEeeeccC
Confidence 4679999999999988888876543 457888888987652 134555431 23466777765
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.0006 Score=59.50 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=51.6
Q ss_pred CeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCc
Q 012349 147 PLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIE 226 (465)
Q Consensus 147 ~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~ 226 (465)
++.++.|+++...++|+||=.+.+..+.+.++....+ +..+|+-|.|+..+.. +.+++.-.
T Consensus 58 ~~~~~~~~~~~~~~~DViIDFs~p~~~~~~~~~a~~~------~~~~ViGTTG~~~~~~---------~~i~~~a~---- 118 (162)
T d1diha1 58 GVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQH------GKGMVIGTTGFDEAGK---------QAIRDAAA---- 118 (162)
T ss_dssp SCCEESCSTTTTTSCSEEEECSCHHHHHHHHHHHHHT------TCEEEECCCCCCHHHH---------HHHHHHTT----
T ss_pred CceeeccHHHHhcccceEEEeccHHHHHHHHHHHHhc------cceeEEecCCCcHHHH---------HHHHHHcC----
Confidence 4567888888889999999999998888877765432 4567888889876521 34555331
Q ss_pred cEEEEeCCchhh
Q 012349 227 NILYLGGPNIAS 238 (465)
Q Consensus 227 ~i~vlsGP~~a~ 238 (465)
.+.++..|||..
T Consensus 119 ~ipi~~apN~Sl 130 (162)
T d1diha1 119 DIAIVFAANFSM 130 (162)
T ss_dssp TSCEEECSCCCH
T ss_pred CCCEEEEccccH
Confidence 234688899875
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.10 E-value=0.00027 Score=63.75 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=61.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++|+|||.|.+|..+|..+..- | .+|..|++....... ..
T Consensus 43 gk~vgIiG~G~IG~~va~~l~~f-g-----~~V~~~d~~~~~~~~--------------------------~~------- 83 (197)
T d1j4aa1 43 DQVVGVVGTGHIGQVFMQIMEGF-G-----AKVITYDIFRNPELE--------------------------KK------- 83 (197)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCCHHHH--------------------------HT-------
T ss_pred CCeEEEecccccchhHHHhHhhh-c-----ccccccCcccccccc--------------------------cc-------
Confidence 37999999999999999999654 6 789999876431100 00
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHH-HHHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVF-EEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl-~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.. ...++++.+..+|+|++++|-. .++.++ ++.-..+++ ++++|.++-|=
T Consensus 84 ------------------------~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~---~a~lIN~sRG~ 135 (197)
T d1j4aa1 84 ------------------------GY-YVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ---DVVIVNVSRGP 135 (197)
T ss_dssp ------------------------TC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCT---TEEEEECSCGG
T ss_pred ------------------------ee-eeccccccccccccccccCCccccccccccHHHHhhhCC---ccEEEecCchh
Confidence 01 1246778899999999999943 333333 222334454 67888888774
Q ss_pred c
Q 012349 201 E 201 (465)
Q Consensus 201 ~ 201 (465)
.
T Consensus 136 i 136 (197)
T d1j4aa1 136 L 136 (197)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.0022 Score=56.12 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=59.7
Q ss_pred CceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 43 PLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 43 ~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
++||+|||+|.||.. ....+.+. + +..++. +++++++..+. +.+. +.
T Consensus 3 kirigiIG~G~~g~~~h~~~l~~~-~---~~~~i~~v~d~~~~~~~~---------~~~~-------------~~----- 51 (181)
T d1zh8a1 3 KIRLGIVGCGIAARELHLPALKNL-S---HLFEITAVTSRTRSHAEE---------FAKM-------------VG----- 51 (181)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTT-T---TTEEEEEEECSSHHHHHH---------HHHH-------------HS-----
T ss_pred CcEEEEEcCCHHHHHHHHHHHHhC-C---CCeEEEEEEeccHhhhhh---------hhcc-------------cc-----
Confidence 479999999999986 45556543 2 113444 78888764432 1110 00
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~k 198 (465)
.....+|.++.++ +.|+|++|+|+....+++..+... +..| .+-|
T Consensus 52 --------------------------~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~~~~al~~------gk~V-~~EK 98 (181)
T d1zh8a1 52 --------------------------NPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEKALRK------GVHV-ICEK 98 (181)
T ss_dssp --------------------------SCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHHHHHT------TCEE-EEES
T ss_pred --------------------------ccceeeeeeccccccccceeecccccccccccccccccc------chhh-hcCC
Confidence 1234678888765 479999999999887777776542 2333 4566
Q ss_pred cccc
Q 012349 199 GVEA 202 (465)
Q Consensus 199 Gi~~ 202 (465)
-+..
T Consensus 99 Pl~~ 102 (181)
T d1zh8a1 99 PIST 102 (181)
T ss_dssp SSSS
T ss_pred CCcC
Confidence 5543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=96.99 E-value=0.00061 Score=60.98 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=65.4
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
-++|+|||.|.+|..+|..+..- | .+|..|++....... ....
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~f-g-----~~v~~~d~~~~~~~~-------------------------~~~~------ 89 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGF-D-----MDIDYFDTHRASSSD-------------------------EASY------ 89 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSCCCHHH-------------------------HHHH------
T ss_pred ccceEEeecccchHHHHHHHHhh-c-----cccccccccccccch-------------------------hhcc------
Confidence 47999999999999999988755 5 789999886532110 0000
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc-hHHHHHH-HHHHhhhccCCCCEEEEeeccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST-ETKEVFE-EISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~-~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi 200 (465)
......++++.++.+|+|++++|-. .++.++. +.-..+++ ++++|.++-|=
T Consensus 90 ------------------------~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~---~a~lIN~sRG~ 142 (191)
T d1gdha1 90 ------------------------QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQ---GAIVVNTARGD 142 (191)
T ss_dssp ------------------------TCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCT---TEEEEECSCGG
T ss_pred ------------------------cccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCC---ccEEEecCCcc
Confidence 1223456888899999999999953 4444442 23334555 68899988884
Q ss_pred cc
Q 012349 201 EA 202 (465)
Q Consensus 201 ~~ 202 (465)
..
T Consensus 143 iv 144 (191)
T d1gdha1 143 LV 144 (191)
T ss_dssp GB
T ss_pred ch
Confidence 33
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.95 E-value=0.00067 Score=60.24 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=65.1
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEAR 120 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~ 120 (465)
...++|+|+|.|.+|..+|..+..- | .+|..|++.....+. ...
T Consensus 42 l~~k~vgiiG~G~IG~~va~~~~~f-g-----~~v~~~d~~~~~~~~--------------------------~~~---- 85 (184)
T d1ygya1 42 IFGKTVGVVGLGRIGQLVAQRIAAF-G-----AYVVAYDPYVSPARA--------------------------AQL---- 85 (184)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECTTSCHHHH--------------------------HHH----
T ss_pred ccceeeeeccccchhHHHHHHhhhc-c-----ceEEeecCCCChhHH--------------------------hhc----
Confidence 3457999999999999999988644 5 789999876532110 000
Q ss_pred hcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCc-chHHHHHH-HHHHhhhccCCCCEEEEeec
Q 012349 121 LGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPS-TETKEVFE-EISRYWKERITVPVIISLAK 198 (465)
Q Consensus 121 l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps-~~l~~vl~-~l~~~l~~~~~~~ivIs~~k 198 (465)
.+. ..++++.++.||+|++++|- ..++.++. +.-..+++ ++++|.++-
T Consensus 86 --------------------------~~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~---~a~lIN~sR 135 (184)
T d1ygya1 86 --------------------------GIE-LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKP---GVIIVNAAR 135 (184)
T ss_dssp --------------------------TCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCT---TEEEEECSC
T ss_pred --------------------------Cce-eccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCC---CceEEEecc
Confidence 122 24678889999999999994 44555542 33344565 688999888
Q ss_pred ccc
Q 012349 199 GVE 201 (465)
Q Consensus 199 Gi~ 201 (465)
|=.
T Consensus 136 G~i 138 (184)
T d1ygya1 136 GGL 138 (184)
T ss_dssp TTS
T ss_pred hhh
Confidence 833
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=96.94 E-value=0.0014 Score=59.62 Aligned_cols=102 Identities=12% Similarity=0.023 Sum_probs=60.3
Q ss_pred CCCCceEEEECccHHHH-HHHHHHHHhcCCCCCCeeEE-EEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchh
Q 012349 40 EGDPLRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIR-IWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYV 117 (465)
Q Consensus 40 ~~~~mkIaIIGaGamGs-alA~~La~~~G~~~~~~~V~-l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~ 117 (465)
+.++-||+|||+|.||. .+...+... . +.+|. +++++++..+.. .++. .++.
T Consensus 30 ~~~~iriaiIG~G~~~~~~~~~~~~~~-~----~~~ivav~d~~~~~a~~~--------~~~~------------~i~~- 83 (221)
T d1h6da1 30 EDRRFGYAIVGLGKYALNQILPGFAGC-Q----HSRIEALVSGNAEKAKIV--------AAEY------------GVDP- 83 (221)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHTTTC-S----SEEEEEEECSCHHHHHHH--------HHHT------------TCCG-
T ss_pred CCCCEEEEEEcCcHHHHHHHHHHHHhC-C----CceEEEEecCCHHHHHHH--------HHhh------------cccc-
Confidence 33557999999999997 455554433 1 24544 889888655431 1110 0110
Q ss_pred hhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEE
Q 012349 118 EARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIIS 195 (465)
Q Consensus 118 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs 195 (465)
..+...+|.++.+. +.|+|++++|.+...++..+.... +.. |.
T Consensus 84 ----------------------------~~~~~~~d~~ell~~~~iD~V~I~tp~~~H~~~~~~al~~------gk~-v~ 128 (221)
T d1h6da1 84 ----------------------------RKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKA------GKH-VM 128 (221)
T ss_dssp ----------------------------GGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHHHHHT------TCE-EE
T ss_pred ----------------------------ccccccCchhhhcccccceeeeeccchhhhhhHHHHhhhc------chh-hh
Confidence 02334566666654 579999999999877776665432 233 34
Q ss_pred eeccccc
Q 012349 196 LAKGVEA 202 (465)
Q Consensus 196 ~~kGi~~ 202 (465)
+-|-+..
T Consensus 129 ~EKPla~ 135 (221)
T d1h6da1 129 CEKPMAT 135 (221)
T ss_dssp ECSSCCS
T ss_pred cCCCccC
Confidence 6665543
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.91 E-value=0.002 Score=56.70 Aligned_cols=93 Identities=28% Similarity=0.408 Sum_probs=70.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh-hhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhhc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS-VDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARLG 122 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~-~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l~ 122 (465)
++|+|||.|+=|.+=|.-|-++ | .+|++=-|.... .++. +
T Consensus 17 k~IaViGYGsQG~AhAlNLrDS-G-----~~V~VGLr~gs~s~~~A---------~------------------------ 57 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDS-G-----VDVTVGLRSGSATVAKA---------E------------------------ 57 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEECCTTCHHHHHH---------H------------------------
T ss_pred CEEEEEeeCcHhHHHHhhhhhc-C-----CCEEEEcCCCCccHHHH---------h------------------------
Confidence 6899999999999999999999 8 789887665421 1110 0
Q ss_pred CCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHH-HHHHhhhccCCCCEEEEeecccc
Q 012349 123 DRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFE-EISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~-~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.+ ..++ -+.+||++.+|+|.+.+|...-.++.+ +|.|++++ ++ .+.++-|+.
T Consensus 58 ----------~~------------Gf~v-~~~~eA~~~aDiim~L~PD~~q~~vy~~~I~p~lk~---g~-~L~FaHGfn 110 (182)
T d1np3a2 58 ----------AH------------GLKV-ADVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKK---GA-TLAFAHGFS 110 (182)
T ss_dssp ----------HT------------TCEE-ECHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCT---TC-EEEESCCHH
T ss_pred ----------hh------------cccc-ccHHHHhhhcCeeeeecchHHHHHHHHHhhhhhcCC---Cc-EEEEeccce
Confidence 01 1222 457789999999999999998889885 79999997 44 456777875
Q ss_pred c
Q 012349 202 A 202 (465)
Q Consensus 202 ~ 202 (465)
.
T Consensus 111 I 111 (182)
T d1np3a2 111 I 111 (182)
T ss_dssp H
T ss_pred E
Confidence 4
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=96.87 E-value=0.0016 Score=59.21 Aligned_cols=105 Identities=22% Similarity=0.263 Sum_probs=69.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCC-CCCCeeEEEEecCch-hhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGY-LRDKVLIRIWRRPGR-SVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~-~~~~~~V~l~~r~~~-~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
+++||+|||.|+=|.+-|.-|-++ |. .-.+.+|++--|... ..++.+.
T Consensus 43 g~KkIaViGYGsQG~AhAlNLrDS-G~~~~sgv~V~VGLr~gs~S~~kA~~----------------------------- 92 (226)
T d1qmga2 43 GIKQIGVIGWGSQAPAQAQNLKDS-LTEAKSDVVVKIGLRKGSNSFAEARA----------------------------- 92 (226)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHH-HHHTTCCCEEEEEECTTCSCHHHHHH-----------------------------
T ss_pred CCCEEEEEEeccHHHHHHHhChhh-cccccCCceEEEEeCCCChhHHHHHH-----------------------------
Confidence 346899999999999999999986 51 000144666555432 2221111
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
+||.. .+.. .-+..||++.||+|.+.+|-....++.++|.|++++ +. .+..+-|
T Consensus 93 --------------dGf~v-------~~~~-v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~---G~-~L~FaHG 146 (226)
T d1qmga2 93 --------------AGFSE-------ENGT-LGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKP---NS-ILGLSHG 146 (226)
T ss_dssp --------------TTCCG-------GGTC-EEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCT---TC-EEEESSS
T ss_pred --------------cCCcc-------CCCc-ccCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCC---Cc-eeeecch
Confidence 11100 0111 134567899999999999999999999999999998 55 4567767
Q ss_pred ccc
Q 012349 200 VEA 202 (465)
Q Consensus 200 i~~ 202 (465)
+..
T Consensus 147 FnI 149 (226)
T d1qmga2 147 FLL 149 (226)
T ss_dssp HHH
T ss_pred hhh
Confidence 754
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.0011 Score=58.85 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=33.4
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.|+||+|+|+ |.+|++++..|.++ | ++|+++.|+++..
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~-g-----~~V~~~~R~~~~~ 40 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQA-G-----YEVTVLVRDSSRL 40 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCGGGS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEEcChhhc
Confidence 3579999995 99999999999998 7 9999999987643
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.56 E-value=0.0023 Score=53.46 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=32.7
Q ss_pred CHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccc
Q 012349 153 NLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEA 202 (465)
Q Consensus 153 dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~ 202 (465)
++.+.-...|++++++|+..+.++++++...- -..++.++.|+..
T Consensus 57 sl~dlp~~vDlvvi~vp~~~~~~~~~~~~~~g-----~~~~vi~s~Gf~e 101 (129)
T d2csua1 57 SVKDIPDEIDLAIIVVPKRFVKDTLIQCGEKG-----VKGVVIITAGFGE 101 (129)
T ss_dssp STTSCSSCCSEEEECSCHHHHHHHHHHHHHHT-----CCEEEECCCSSTT
T ss_pred chhhcCCCCceEEEecChHHhHHHHHHHHHcC-----CCEEEEecccccc
Confidence 33333346799999999999999999987542 1346678888864
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.0054 Score=52.26 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=29.5
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
.+.++|++|+|+|+..-..+.+++... .. +.+||+.+.-+
T Consensus 62 ~~~~~DivF~a~~~~~s~~~~~~~~~~-g~---~~~VID~Ss~f 101 (146)
T d1t4ba1 62 ALKALDIIVTCQGGDYTNEIYPKLRES-GW---QGYWIDAASSL 101 (146)
T ss_dssp HHHTCSEEEECSCHHHHHHHHHHHHHT-TC---CCEEEECSSTT
T ss_pred hhhcCcEEEEecCchHHHHhhHHHHhc-CC---CeecccCCccc
Confidence 468999999999999888888777642 11 35688777443
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.55 E-value=0.0042 Score=52.52 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=67.0
Q ss_pred HHhhhhcCCCCCCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHh
Q 012349 31 ELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRR 106 (465)
Q Consensus 31 ~~~~~~~~~~~~~mkIaIIGa----GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~ 106 (465)
++|+++.. +++|+|||+ |.+|..++..|.+. | ++|+.+......+
T Consensus 11 ~i~~~L~~----~ksIAVVGaS~~~~~~g~~v~~~L~~~-g-----~~v~pVnP~~~~i--------------------- 59 (139)
T d2d59a1 11 DIREILTR----YKKIALVGASPKPERDANIVMKYLLEH-G-----YDVYPVNPKYEEV--------------------- 59 (139)
T ss_dssp HHHHHHHH----CCEEEEETCCSCTTSHHHHHHHHHHHT-T-----CEEEEECTTCSEE---------------------
T ss_pred HHHHHHhc----CCeEEEEeecCCCCCchHHHHHHHHHC-C-----CEEEEECCccccc---------------------
Confidence 46665533 368999996 57999999999888 7 7877775543211
Q ss_pred hhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhc
Q 012349 107 LIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE 186 (465)
Q Consensus 107 ~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~ 186 (465)
- +..+..++.+.-...|++++++|+....++++++...
T Consensus 60 --------~-------------------------------G~~~~~sl~dlp~~iD~v~i~vp~~~~~~~~~e~~~~--- 97 (139)
T d2d59a1 60 --------L-------------------------------GRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK--- 97 (139)
T ss_dssp --------T-------------------------------TEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHH---
T ss_pred --------C-------------------------------CCcccccccccCccceEEEEEeCHHHHHHHHHHHHHh---
Confidence 1 1223344444444679999999999999999998753
Q ss_pred cCCCCEEEEeecccccc
Q 012349 187 RITVPVIISLAKGVEAE 203 (465)
Q Consensus 187 ~~~~~ivIs~~kGi~~~ 203 (465)
+...+.++.|...+
T Consensus 98 ---g~k~v~~~~G~~~e 111 (139)
T d2d59a1 98 ---GAKVVWFQYNTYNR 111 (139)
T ss_dssp ---TCSEEEECTTCCCH
T ss_pred ---CCCEEEEeccccCH
Confidence 23356788886654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.50 E-value=0.0019 Score=56.41 Aligned_cols=40 Identities=15% Similarity=0.034 Sum_probs=33.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
..++|.|+|+|..|.+++..|.+. + .+|++++|+.+.++.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~-~-----~~i~I~nR~~~~a~~ 56 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQA-Q-----QNIVLANRTFSKTKE 56 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHccc-C-----ceeeeccchHHHHHH
Confidence 457899999999999999999876 4 689999999876553
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.49 E-value=0.0015 Score=58.28 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=31.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+||+|||+|..|.+.|..|+++ | ++|++++|+.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~-G-----~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARK-G-----YSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence 346999999999999999999999 8 8999999864
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.48 E-value=0.0064 Score=51.91 Aligned_cols=41 Identities=20% Similarity=0.133 Sum_probs=30.8
Q ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 156 eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
+...++|++|+|+|+..-.++.+.+...-. +++||+++.-+
T Consensus 60 ~~~~~~DvvF~alp~~~s~~~~~~l~~~g~----~~~VIDlSsdf 100 (147)
T d1mb4a1 60 ESLKQLDAVITCQGGSYTEKVYPALRQAGW----KGYWIDAASTL 100 (147)
T ss_dssp HHHTTCSEEEECSCHHHHHHHHHHHHHTTC----CSEEEESSSTT
T ss_pred hhhccccEEEEecCchHHHHHhHHHHHcCC----ceEEEeCCccc
Confidence 446899999999999998888887764311 35788887544
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.0039 Score=54.02 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=34.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
..++|.|+|+|..+.+++..|.+. | .+|++++|+.++++.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~-g-----~~i~I~nRt~~ka~~ 56 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSL-D-----CAVTITNRTVSRAEE 56 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHhccc-c-----eEEEeccchHHHHHH
Confidence 347899999999999999999988 7 679999999876553
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.26 E-value=0.0042 Score=50.97 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=42.2
Q ss_pred eecchhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 20 HTNGSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
||--++++- +++|..+ + ..++|+|||+|..|.-+|..|++. | .+|+++.+.+..+.
T Consensus 12 ~~lrtl~Da-~~l~~~~---~-~~~~vvIIGgG~iG~E~A~~l~~~-g-----~~Vtli~~~~~~l~ 67 (121)
T d1d7ya2 12 HTLRTLEDA-RRIQAGL---R-PQSRLLIVGGGVIGLELAATARTA-G-----VHVSLVETQPRLMS 67 (121)
T ss_dssp EECCSHHHH-HHHHHHC---C-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSTTT
T ss_pred EEeCCHHHH-HHHHHhh---h-cCCeEEEECcchhHHHHHHHhhcc-c-----ceEEEEeecccccc
Confidence 455565542 4455444 2 237899999999999999999998 7 89999999886554
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.19 E-value=0.004 Score=56.96 Aligned_cols=53 Identities=26% Similarity=0.326 Sum_probs=40.6
Q ss_pred chhHHHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 23 GSLEERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...|+-|...+.-.- ...+++||+|||+|.-|.+.|..|+++ | ++|+|+.+++
T Consensus 11 ~~~~~~~~~~~~~~~-~~~~pkkV~IIGaG~aGLsaA~~L~~~-G-----~~V~vlE~~~ 63 (370)
T d2iida1 11 NDYEEFLEIARNGLK-ATSNPKHVVIVGAGMAGLSAAYVLAGA-G-----HQVTVLEASE 63 (370)
T ss_dssp TTHHHHHHHHHHCSC-CCSSCCEEEEECCBHHHHHHHHHHHHH-T-----CEEEEECSSS
T ss_pred ccHHHHHHHHhcCCC-CCCCCCeEEEECCCHHHHHHHHHHHHC-C-----CCEEEEeCCC
Confidence 345555555444332 344668999999999999999999999 8 9999998765
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.05 E-value=0.0067 Score=58.75 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=54.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+..+++|||+|..+-.-+..+..-.+ -.+|.+|+|+++..++ +.+.+.. .++
T Consensus 127 da~~l~iiG~G~QA~~~~~a~~~v~~----i~~V~v~~r~~~~~~~-----~~~~l~~--------------~~g----- 178 (340)
T d1x7da_ 127 NARKMALIGNGAQSEFQALAFHKHLG----IEEIVAYDTDPLATAK-----LIANLKE--------------YSG----- 178 (340)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSC----CCEEEEECSSHHHHHH-----HHHHHTT--------------CTT-----
T ss_pred CCceEEEEcccHHHHHHHHHHhhhcc----eeeeEEEecChHHHHH-----HHHhhhh--------------ccC-----
Confidence 45789999999999888877765423 1589999999875543 2111110 011
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcc
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPST 171 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~ 171 (465)
.++.+..++++++++||+|+.||.+.
T Consensus 179 ------------------------~~v~~~~s~~eav~~ADIi~t~Tas~ 204 (340)
T d1x7da_ 179 ------------------------LTIRRASSVAEAVKGVDIITTVTADK 204 (340)
T ss_dssp ------------------------CEEEECSSHHHHHTTCSEEEECCCCS
T ss_pred ------------------------CCceecCCHHHHHhcCCceeeccccC
Confidence 13567889999999999999999654
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.99 E-value=0.01 Score=56.84 Aligned_cols=42 Identities=7% Similarity=0.107 Sum_probs=33.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+..+++|||+|..+-.-+..+..-.. -.+|.+|+|+++..+.
T Consensus 124 ~~~~l~iiGaG~QA~~~~~al~~~~~----i~~i~v~~r~~e~~~~ 165 (320)
T d1omoa_ 124 NSSVFGFIGCGTQAYFQLEALRRVFD----IGEVKAYDVREKAAKK 165 (320)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSC----CCEEEEECSSHHHHHH
T ss_pred CccEEEEecCcccHHHHHHHHHHHhh----hhhcccccCCHHHHHH
Confidence 45789999999999998888876522 2589999999876543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.98 E-value=0.0071 Score=52.28 Aligned_cols=39 Identities=18% Similarity=0.417 Sum_probs=33.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+||.|||+|..|.+++..|.+. |. .+|++++|+.++.+
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~-g~----~~I~I~nR~~~ka~ 55 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNS-GF----EKLKIYARNVKTGQ 55 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHT-TC----CCEEEECSCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CC----CEEEEecccHHHHH
Confidence 36899999999999999999988 72 47999999987554
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.96 E-value=0.0023 Score=57.40 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||+|||+|.-|.+.|..|+++ | ++|+++.+++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~-G-----~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR-G-----TDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT-T-----CCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCC
Confidence 7999999999999999999999 8 8999998765
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=95.95 E-value=0.013 Score=50.96 Aligned_cols=46 Identities=11% Similarity=0.201 Sum_probs=31.7
Q ss_pred EEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 149 KVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 149 ~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
....+......+.|++|+|+|+..-.+....+.. . +..+|.++.-+
T Consensus 61 ~~~~~~~~~~~~~dvvf~alp~~~s~~~~~~~~~---~---~~~vIDlSadf 106 (179)
T d2g17a1 61 QPMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQ---A---GCVVFDLSGAF 106 (179)
T ss_dssp EEESCGGGTCTTCCEEEECSCHHHHHHHHHHHHH---T---TCEEEECSSTT
T ss_pred ccchhhhhhhcccceeeccccchhHHHHhhhhhh---c---Cceeecccccc
Confidence 3344544445789999999999887777666543 2 56788777544
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0095 Score=46.27 Aligned_cols=35 Identities=20% Similarity=0.199 Sum_probs=31.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
-+||+|+|+|..|.+.|..|++. | .+|++|+.+..
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~-g-----~~v~~~D~~~~ 39 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLAR-G-----VTPRVMDTRMT 39 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEESSSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHC-C-----CEEEEeeCCcC
Confidence 36899999999999999999998 7 89999998653
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.89 E-value=0.0093 Score=51.39 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=22.3
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHh
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~~ 65 (465)
....++||+|||+|.||...+..+.+.
T Consensus 3 ~~~~k~kv~iIG~G~~g~~h~~~l~~~ 29 (172)
T d1lc0a1 3 TNSGKFGVVVVGVGRAGSVRLRDLKDP 29 (172)
T ss_dssp CCCCSEEEEEECCSHHHHHHHHHHTSH
T ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHhC
Confidence 345678999999999999988887654
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0056 Score=53.59 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=35.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
..++|.|||+|..|.+++..|.+. |. .++++++|+.+.+++
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~-g~----~~i~i~nR~~~~~~~ 57 (182)
T d1vi2a1 17 KGKTMVLLGAGGASTAIGAQGAIE-GL----KEIKLFNRRDEFFDK 57 (182)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEECSSTTHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHhhc-CC----ceEeeeccchHHHHH
Confidence 447999999999999999999988 62 589999999876664
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=95.85 E-value=0.024 Score=48.60 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=24.1
Q ss_pred CCceEEEECccHHHHH-HHHHHHHhcCCCCCCeeEE-EEecCch
Q 012349 42 DPLRIVGVGAGAWGSV-FTAMLQDSYGYLRDKVLIR-IWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsa-lA~~La~~~G~~~~~~~V~-l~~r~~~ 83 (465)
+++||+|||+|.+|+. +...+... . ..++. +.+|+.+
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~-~----~~el~avas~~~~ 41 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNA-K----YLEMGAMVGIDAA 41 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHC-S----SEEEEEEECSCTT
T ss_pred CCcEEEEEcCcHHHHHHHHHHHhhC-C----cceEEEEEecchh
Confidence 4589999999999985 45555333 2 14554 4566653
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.77 E-value=0.0068 Score=48.98 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=34.2
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
..+.+|+|||+|..|.-+|..|++. | .+|+++.|.+..+
T Consensus 20 ~~p~~v~IiGgG~ig~E~A~~l~~~-G-----~~Vtlve~~~~il 58 (117)
T d1ebda2 20 EVPKSLVVIGGGYIGIELGTAYANF-G-----TKVTILEGAGEIL 58 (117)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSSS
T ss_pred hcCCeEEEECCCccceeeeeeeccc-c-----cEEEEEEecceec
Confidence 3457999999999999999999998 8 8999999987543
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.76 E-value=0.0061 Score=50.42 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=51.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCee-EEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVL-IRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~-V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
+-+|+|+|||..|.+++..+..+.| ++ |-+++-++.... +.+.++
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~~-----~~iv~fiDdd~~k~G-------------------------~~I~Gi---- 48 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGES-----FELRGFFDVDPEKVG-------------------------RPVRGG---- 48 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSS-----EEEEEEEESCTTTTT-------------------------CEETTE----
T ss_pred CceEEEEcCCHHHHHHHHhHhhcCC-----cEEEEEEeCchHhcC-------------------------CEECCE----
Confidence 3589999999999999886643312 45 445666654221 122221
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHHHh-cCCCEEEEecCcchHHHHHHHHHHh
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAV-WDADIVINGLPSTETKEVFEEISRY 183 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal-~~aDiVIlaVps~~l~~vl~~l~~~ 183 (465)
++...+++++.+ ...++.++++|+...+++++.+..+
T Consensus 49 -------------------------~V~~~~~l~~~~~~~i~iai~~i~~~~~~~I~d~l~~~ 86 (126)
T d2dt5a2 49 -------------------------VIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLLVAA 86 (126)
T ss_dssp -------------------------EEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred -------------------------EEecHHHHHHHHhhcccEEEEeCCHHHHHHHHHHHHHc
Confidence 122223444332 3468999999999999988887653
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.75 E-value=0.015 Score=49.17 Aligned_cols=38 Identities=8% Similarity=0.051 Sum_probs=28.2
Q ss_pred HhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccc
Q 012349 157 AVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGV 200 (465)
Q Consensus 157 al~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi 200 (465)
...++|++|+|+|+..-.++...+.. . +..||.++.-+
T Consensus 61 ~~~~~d~vf~a~p~~~s~~~~~~~~~---~---g~~VID~Ss~f 98 (144)
T d2hjsa1 61 DFSSVGLAFFAAAAEVSRAHAERARA---A---GCSVIDLSGAL 98 (144)
T ss_dssp CGGGCSEEEECSCHHHHHHHHHHHHH---T---TCEEEETTCTT
T ss_pred hhccceEEEecCCcchhhhhcccccc---C---CceEEeechhh
Confidence 35789999999999888777776543 3 57788776544
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.70 E-value=0.0037 Score=54.02 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~ 83 (465)
..+||+|||+|..|...|..|++. | + +|+++.+.+.
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~-G-----~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARL-G-----YSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHT-T-----CCCEEEEESSSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHC-C-----CCeEEEEEecCc
Confidence 457999999999999999999999 8 6 6999998764
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.68 E-value=0.016 Score=47.40 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=33.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
...+|+|||+|.+|.-+|..|++. | .+|+++.+.+..+
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~-g-----~~Vtlie~~~~~l 66 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKA-G-----KKVTVIDILDRPL 66 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSTT
T ss_pred CCCEEEEECChHHHHHHHHHhhcc-c-----eEEEEEEecCccc
Confidence 457999999999999999999998 7 8999999876543
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.64 E-value=0.023 Score=46.22 Aligned_cols=88 Identities=20% Similarity=0.216 Sum_probs=60.2
Q ss_pred ceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhh
Q 012349 44 LRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEA 119 (465)
Q Consensus 44 mkIaIIGa----GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~ 119 (465)
++|+|||+ |.+|..+...|.+. | ++|..+..+.+.+ .
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~-g-----~~V~pVnP~~~~i-----------------------------~---- 42 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK-G-----FEVLPVNPNYDEI-----------------------------E---- 42 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT-T-----CEEEEECTTCSEE-----------------------------T----
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC-C-----CEEEEEccccccc-----------------------------c----
Confidence 58999994 78999999999888 7 7776665433211 0
Q ss_pred hhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecc
Q 012349 120 RLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKG 199 (465)
Q Consensus 120 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kG 199 (465)
++.+..++.+.-...|++++++|+....++++++... +...+.++.|
T Consensus 43 ---------------------------G~~~y~sl~~lp~~~D~vvi~vp~~~~~~~l~~~~~~------g~k~v~~~~g 89 (116)
T d1y81a1 43 ---------------------------GLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEA------GFKKLWFQPG 89 (116)
T ss_dssp ---------------------------TEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHHT------TCCEEEECTT
T ss_pred ---------------------------CccccccchhccccceEEEEEeCHHHHHHHHHHHHhc------CCceEEeccc
Confidence 1223344444334569999999999999999987653 2234567777
Q ss_pred cccc
Q 012349 200 VEAE 203 (465)
Q Consensus 200 i~~~ 203 (465)
...+
T Consensus 90 ~~~~ 93 (116)
T d1y81a1 90 AESE 93 (116)
T ss_dssp SCCH
T ss_pred hhhH
Confidence 6544
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0068 Score=53.35 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=35.0
Q ss_pred CCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 38 KAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 38 ~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+...++||+|||+|.-|..-|..|++. | |+|+++.+++.
T Consensus 38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~-G-----~~Vtl~E~~~~ 77 (179)
T d1ps9a3 38 LPAVQKKNLAVVGAGPAGLAFAINAAAR-G-----HQVTLFDAHSE 77 (179)
T ss_dssp CSCSSCCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSS
T ss_pred CCCCCCcEEEEECccHHHHHHHHHHHhh-c-----cceEEEeccCc
Confidence 3445568999999999999999999999 8 99999999764
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.50 E-value=0.014 Score=48.31 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=34.2
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
..+|+|||+|..|.-+|..|++. | .+|+++.+.+..+..
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~-g-----~~Vtvie~~~~~l~~ 73 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKA-N-----MHVTLLDTAARVLER 73 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSTTTT
T ss_pred CCEEEEECCchHHHHHHHHHHhh-C-----cceeeeeeccccccc
Confidence 47999999999999999999998 7 899999998765543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.46 E-value=0.041 Score=43.96 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=31.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+||.|||+|..|..-+..|.+. | .+|++++....
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~-g-----a~v~v~~~~~~ 46 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEA-G-----ARLTVNALTFI 46 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHT-T-----BEEEEEESSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-C-----CeEEEEeccCC
Confidence 346999999999999999999998 7 89999987653
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.46 E-value=0.0095 Score=48.72 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=33.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.+.|++|||+|.+|.=+|..|++. | .+|+++.+++..+
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~l-G-----~~Vtii~~~~~~l 59 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSRL-G-----SKVTVVEFQPQIG 59 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSS
T ss_pred CCCeEEEECCCchHHHHHHHHHhh-C-----cceeEEEeccccc
Confidence 457999999999999999999988 8 8999999977543
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.46 E-value=0.0073 Score=54.28 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=32.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+||+|||+|.-|.+.|..|+++ | ++|+++.++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~-G-----~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDA-G-----VDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 347999999999999999999999 8 99999998764
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=95.43 E-value=0.013 Score=53.17 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=31.9
Q ss_pred EEecCHHHHhc--CCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccccc
Q 012349 149 KVVTNLQEAVW--DADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAE 203 (465)
Q Consensus 149 ~~t~dl~eal~--~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~ 203 (465)
...+|.++.+. +.|+|++|||.....+........-....++. -|.+-|-+...
T Consensus 72 ~~~~~~~~l~~~~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k-~V~~EKPla~~ 127 (237)
T d2nvwa1 72 TGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLR-YLYVEWALAAS 127 (237)
T ss_dssp EEESCHHHHHHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCC-EEEEESSSSSS
T ss_pred eeecchhhcccccccceeeccCCCcchhhHHHHHHHhcccccCCc-eEEEeccccCC
Confidence 44577877664 57899999998877766655443211000022 24577766543
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=95.38 E-value=0.019 Score=47.99 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=67.4
Q ss_pred HHhhhhcCCCCCCceEEEECc----cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHh
Q 012349 31 ELRRLMGKAEGDPLRIVGVGA----GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRR 106 (465)
Q Consensus 31 ~~~~~~~~~~~~~mkIaIIGa----GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~ 106 (465)
++|.++- .+++|+|||+ +.+|......|.+. | +++.++..++.. +
T Consensus 5 ~i~~~L~----~pksIAVVGaS~~~~k~g~~v~~~L~~~-g-----~~~~~v~~~~~~-~-------------------- 53 (136)
T d1iuka_ 5 ELRAYLS----QAKTIAVLGAHKDPSRPAHYVPRYLREQ-G-----YRVLPVNPRFQG-E-------------------- 53 (136)
T ss_dssp HHHHHHH----HCCEEEEETCCSSTTSHHHHHHHHHHHT-T-----CEEEEECGGGTT-S--------------------
T ss_pred HHHHHHh----CCCeEEEEeecCCCCCchHHHHHHHhcC-C-----CCceEEEecccc-c--------------------
Confidence 4566442 3468999997 78999999999888 7 788888665320 0
Q ss_pred hhhcccccchhhhhhcCCcccchhhhhccccccCCCCCCCCeEEecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhc
Q 012349 107 LIRRCAYLKYVEARLGDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKE 186 (465)
Q Consensus 107 ~~~n~~~l~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~ 186 (465)
... +..+..++.+.-...|++++++|+....++++++... ..
T Consensus 54 ------~i~-------------------------------g~~~~~~l~~i~~~iD~v~v~~p~~~v~~~v~~~~~~-g~ 95 (136)
T d1iuka_ 54 ------ELF-------------------------------GEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLAL-RP 95 (136)
T ss_dssp ------EET-------------------------------TEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHHH-CC
T ss_pred ------eee-------------------------------ceecccchhhccCCCceEEEeccHHHHHHHHHHHHhh-CC
Confidence 011 2233344544435679999999999999999998654 21
Q ss_pred cCCCCEEEEeecccccc
Q 012349 187 RITVPVIISLAKGVEAE 203 (465)
Q Consensus 187 ~~~~~ivIs~~kGi~~~ 203 (465)
+ .+.++.|+..+
T Consensus 96 ---k--~i~~q~G~~~~ 107 (136)
T d1iuka_ 96 ---G--LVWLQSGIRHP 107 (136)
T ss_dssp ---S--CEEECTTCCCH
T ss_pred ---C--eEEEecCccCH
Confidence 2 34578887654
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.31 E-value=0.037 Score=46.27 Aligned_cols=64 Identities=19% Similarity=0.069 Sum_probs=43.3
Q ss_pred cCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeeccccccccccccCCCHHHHHHhHhCCCCccEEEEeCCchhh
Q 012349 159 WDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVEAELEAVPRIITPTQMINRATGVPIENILYLGGPNIAS 238 (465)
Q Consensus 159 ~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~~~~~~~~~~~~~se~I~e~lg~~~~~i~vlsGP~~a~ 238 (465)
.++|+||=.+.+..+.+.++..... +.++|+-|.|++.+. . +.|++..-. ...+.++..|||..
T Consensus 43 ~~~DvvIDFS~p~~~~~~~~~~~~~------~~~~ViGTTG~~~~~-----~----~~l~~~~~~-~~~ipil~apNfSl 106 (135)
T d1yl7a1 43 GNTEVVIDFTHPDVVMGNLEFLIDN------GIHAVVGTTGFTAER-----F----QQVESWLVA-KPNTSVLIAPNFTS 106 (135)
T ss_dssp TTCSEEEECCCTTTHHHHHHHHHHT------TCEEEECCCCCCHHH-----H----HHHHHHHHS-CTTCEEEECSCCGG
T ss_pred ccCCEEEEcccHHHHHHHHHHHHhc------CCCEEEeccccchhH-----H----HHHHHHHHh-cCCCCEEEcCCccH
Confidence 4689999999999888888776542 456788888997652 1 334443210 12356788999975
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.14 E-value=0.016 Score=50.44 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=32.6
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
..+-||+|||+|..|..-+.....- | .+|+++|.+.+..+.
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~l-G-----A~V~~~D~~~~~l~~ 70 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGL-G-----AQVQIFDINVERLSY 70 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCCcEEEEECCChHHHHHHHHHhhC-C-----CEEEEEeCcHHHHHH
Confidence 3467999999999999866666555 7 899999999875543
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.12 E-value=0.002 Score=57.28 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=22.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYG 67 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G 67 (465)
|||+|||||.+|.+.|..|+++ |
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~-G 23 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER-Y 23 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-H
T ss_pred CEEEEECchHHHHHHHHHHHHC-C
Confidence 7999999999999999999998 7
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.12 E-value=0.012 Score=48.14 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=31.2
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+.+++|||+|.+|.=+|..|++- | .+|+++.|++
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~l-G-----~~Vtii~~~~ 53 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGI-G-----LDVTVMVRSI 53 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred CCCeEEEECCCccHHHHHHHHhhc-C-----CeEEEEEech
Confidence 346899999999999999999998 8 8999998763
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.047 Score=47.10 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=40.1
Q ss_pred HHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 27 ~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.-+|-|.|..+..- .-++++|+|.|-+|..+|..+..- | ..|++|++++.
T Consensus 9 S~~~~~~r~t~~~l-~Gk~v~V~GyG~iG~g~A~~~rg~-G-----~~V~v~e~dp~ 58 (163)
T d1li4a1 9 SLIDGIKRATDVMI-AGKVAVVAGYGDVGKGCAQALRGF-G-----ARVIITEIDPI 58 (163)
T ss_dssp HHHHHHHHHHCCCC-TTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHH
T ss_pred hHHHHHHHHhCcee-cCCEEEEeccccccHHHHHHHHhC-C-----CeeEeeecccc
Confidence 34677777776532 336899999999999999999876 6 89999999873
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.07 E-value=0.029 Score=49.00 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=25.2
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~ 79 (465)
|+||+|+|| |..|.-+...|+++ - ..++....
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P----~~ei~~l~ 33 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLS 33 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-C----CceEEEee
Confidence 689999997 99999999999876 2 24555443
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.06 E-value=0.018 Score=49.91 Aligned_cols=39 Identities=23% Similarity=0.132 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.-++|.|||+|..+.+++..|.+. .+|++++|+.++++.
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~-------~~i~I~nR~~~ka~~ 55 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKD-------NNIIIANRTVEKAEA 55 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSS-------SEEEEECSSHHHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHccc-------cceeeehhhhhHHHH
Confidence 447899999999999998888644 479999999876654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.015 Score=46.90 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=33.5
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
-+.||+|||+|..|.-+|..|++. | .+|+++.|.+...
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~~~-G-----~~Vtlve~~~~~l 57 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVINGL-G-----AKTHLFEMFDAPL 57 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSS
T ss_pred CCCEEEEECCChhhHHHHHHhhcc-c-----cEEEEEeecchhh
Confidence 357999999999999999999988 7 8999999987544
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.98 E-value=0.012 Score=47.87 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=33.1
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
+.||+|||+|..|.-+|..|++. | .+|+++.|.+..+
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~-g-----~~Vtlv~~~~~il 58 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRL-G-----IDSYIFARGNRIL 58 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTT-T-----CEEEEECSSSSSC
T ss_pred CCEEEEECCchHHHHHHHHHHhc-c-----ccceeeehhcccc
Confidence 68999999999999999999987 7 8999999976543
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=94.95 E-value=0.019 Score=46.57 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=34.0
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
..+.+|+|||+|.+|.=+|..|++. | .+|+++.+.+..+
T Consensus 20 ~~p~~i~IiG~G~ig~E~A~~l~~~-G-----~~Vtiv~~~~~ll 58 (119)
T d3lada2 20 NVPGKLGVIGAGVIGLELGSVWARL-G-----AEVTVLEAMDKFL 58 (119)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSSSSS
T ss_pred cCCCeEEEECCChHHHHHHHHHHHc-C-----CceEEEEeecccC
Confidence 3458999999999999999999988 8 8999999887543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.94 E-value=0.014 Score=47.49 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=31.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
++|+|||+|..|.-+|..|++. | .+|+++.+.+..
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~-g-----~~Vtlv~~~~~l 67 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA-G-----YHVKLIHRGAMF 67 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT-T-----CEEEEECSSSCC
T ss_pred CcEEEECCcHHHHHHHHHhhcc-c-----ceEEEEeccccc
Confidence 6899999999999999999998 7 899999998753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.91 E-value=0.01 Score=52.77 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=30.4
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+||+|||+|.-|.+-|..|++. | ++|+++.+++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~-G-----~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIH-G-----LNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-S-----CEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 6899999999999999999998 8 8999998765
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.87 E-value=0.013 Score=52.56 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=31.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+++|+|||+|--|.++|..|++. |+ ++|+++.++++
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~-Gi----~~V~V~Er~~~ 36 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQA-GI----GKVTLLESSSE 36 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEESSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CC----CeEEEEeCCCC
Confidence 58999999999999999999998 72 48999998764
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.86 E-value=0.0098 Score=54.00 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=29.7
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.|+|||+|.+|++.|..|++. | .+|+++++++
T Consensus 6 DvvIIGaGi~Gls~A~~La~~-G-----~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKE-N-----KNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 399999999999999999999 8 8999999865
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.80 E-value=0.012 Score=55.69 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=31.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+||+|||||--|.+.|..|+++ | ++|+++..+..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~-G-----~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEK-G-----HQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-T-----CEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhC-C-----CCEEEEECCCC
Confidence 47999999999999999999998 7 99999998763
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.75 E-value=0.014 Score=55.20 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=31.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.++||+|||||.-|.+.|..|++. |. +++|+++.++..
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~-~~---~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAE-KA---FDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTT-TC---CSEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHh-CC---CCCEEEEECCCC
Confidence 568999999999999999999876 42 168999999864
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.077 Score=44.27 Aligned_cols=35 Identities=9% Similarity=0.025 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
-.|.|+|.|.+|..++..|.+. | ++|++++.+++.
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~-~-----~~v~vId~d~~~ 38 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQR-G-----QNVTVISNLPED 38 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-T-----CCEEEEECCCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHc-C-----CCEEEEeccchh
Confidence 3599999999999999999988 7 899999988764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.069 Score=48.30 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|||+|.+|+.+|..|++. |. .+++++|.+.
T Consensus 31 ~~VliiG~GglGs~va~~La~~-Gv----g~i~lvD~D~ 64 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASA-GV----GNLTLLDFDT 64 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TC----SEEEEECCCB
T ss_pred CCEEEECCCHHHHHHHHHHHHc-CC----CeEEEECCcc
Confidence 6899999999999999999999 83 5899998775
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.70 E-value=0.023 Score=45.63 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=34.6
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+.+++|||+|..|.-+|..|++. | .+|+++.+.+..+..
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~~~-g-----~~Vtlve~~~~il~~ 59 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYRKL-G-----AQVSVVEARERILPT 59 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSSTT
T ss_pred CCCeEEEECCCHHHHHHHHHHhhc-c-----cceEEEeeecccccc
Confidence 457999999999999999999998 7 899999997755443
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.64 E-value=0.014 Score=50.34 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=29.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.||+|||+|.-|.+.|..|+++ |+ ++|+++.+++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~-G~----~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEA-GI----TDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHT-TC----CCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhC-CC----CcEEEEECCC
Confidence 4799999999999999999998 72 4799998865
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.022 Score=46.58 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=33.0
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
+++|+|||+|..|.-+|..|++. | .+|+++.|.+..+
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~-G-----~~Vtlv~~~~~~l 58 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSAL-G-----SKTSLMIRHDKVL 58 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSSSC
T ss_pred CCEEEEEcCCccHHHHHHHHhcC-C-----cEEEEEeeccccc
Confidence 47999999999999999999988 7 8999999986543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=94.59 E-value=0.026 Score=49.39 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=34.1
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
-++|.|.| +|.+|.++|..|++. | .+|++.+|+.+..+.
T Consensus 23 gK~vlItGasgGIG~~ia~~la~~-G-----~~V~~~~r~~~~~~~ 62 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLAGE-G-----AEVVLCGRKLDKAQA 62 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhh-c-----cchhhcccchHHHHH
Confidence 36899999 599999999999999 8 899999999876654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=94.40 E-value=0.024 Score=51.67 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=32.7
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.++||.|+|+ |.+|..++..|.++ | |+|++.+|++..
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~-G-----~~V~~~~R~~~~ 39 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISL-G-----HPTYVLFRPEVV 39 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCSCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEEECCCcc
Confidence 4678999996 99999999999998 8 999999998653
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.38 E-value=0.016 Score=53.11 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.2
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.+|+|||+|.-|.++|..|++. | ++|.++.++++
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~-G-----~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKA-G-----IDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHC-C-----CCEEEEeCCCC
Confidence 3799999999999999999999 8 89999998764
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.21 E-value=0.018 Score=50.93 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=31.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCC--CCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGY--LRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~--~~~~~~V~l~~r~~ 82 (465)
++||+|||+|.-|.+.|..|++. |. ...+++|++|.+.+
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~-G~~~~~~~~~V~v~E~~~ 42 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKA-ADTTEDLDMAVDMLEMLP 42 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH-HHHSTTCCEEEEEEESSS
T ss_pred CcEEEEECcCHHHHHHHHHHHHc-CCccccCCCceEEEecCC
Confidence 57999999999999999999998 61 11125799999876
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.18 E-value=0.027 Score=48.96 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=29.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||+|||+|..|.-+|..|.+. + ++.+|+++.|++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~-~---~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNL-H---PDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH-C---TTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhc-C---CCCeEEEEeCCC
Confidence 8999999999999999999886 4 125899998865
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=94.00 E-value=0.14 Score=44.00 Aligned_cols=49 Identities=18% Similarity=0.066 Sum_probs=38.8
Q ss_pred HHhHHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 27 ERLDELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 27 ~~~~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.-+|-++|-....- .-++++|+|.|-.|..+|..+..- | ..|+++..++
T Consensus 8 S~~d~i~r~t~~~l-aGk~vvV~GYG~vGrG~A~~~rg~-G-----a~V~V~E~DP 56 (163)
T d1v8ba1 8 SLPDGLMRATDFLI-SGKIVVICGYGDVGKGCASSMKGL-G-----ARVYITEIDP 56 (163)
T ss_dssp HHHHHHHHHHCCCC-TTSEEEEECCSHHHHHHHHHHHHH-T-----CEEEEECSCH
T ss_pred hHHHHHHHHhCcee-cCCEEEEecccccchhHHHHHHhC-C-----CEEEEEecCc
Confidence 34577777665422 236899999999999999999877 7 7999999988
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.96 E-value=0.031 Score=45.47 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=34.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.-+.+++|||+|.+|.=+|..|++. | .+|+++.|++..+.
T Consensus 23 ~~p~~~viiG~G~iglE~A~~~~~~-G-----~~Vtvi~~~~~~l~ 62 (123)
T d1dxla2 23 EIPKKLVVIGAGYIGLEMGSVWGRI-G-----SEVTVVEFASEIVP 62 (123)
T ss_dssp SCCSEEEESCCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSST
T ss_pred ccCCeEEEEccchHHHHHHHHHHhc-C-----CeEEEEEEccccCc
Confidence 3457999999999999999999998 8 89999999876543
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.033 Score=49.81 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=31.7
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+..||+|||+|-=|.+-|..|+++ | ++|+++..+.
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~-G-----~~V~VlEa~~ 38 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSF-G-----MDVTLLEARD 38 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHT-T-----CEEEEECSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhC-C-----CCEEEEeCCC
Confidence 3457899999999999999999999 8 8999997754
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=93.65 E-value=0.046 Score=47.70 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=26.4
Q ss_pred CCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEe
Q 012349 41 GDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWR 79 (465)
Q Consensus 41 ~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~ 79 (465)
++++||+|+|+ |..|.-|...|.++ - ..++....
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~H-P----~~ei~~l~ 37 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANH-P----QFRIKVMT 37 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTC-S----SEEEEEEE
T ss_pred CCccEEEEECcccHHHHHHHHHHHhC-C----CceEEEEe
Confidence 46789999997 99999999999876 2 24655554
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=93.49 E-value=0.053 Score=43.37 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=33.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
..++|+|||+|..|.=+|..|++. | .+|+++.|.+...
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~~~-g-----~~vt~i~~~~~~l 58 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFNAT-G-----RRTVMLVRTEPLK 58 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSCTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-c-----hhheEeeccchhh
Confidence 347999999999999999999988 7 8999999987543
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.035 Score=55.05 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
+||.|||+|++|+.++..|+.. |. .+++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~-Gv----g~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALS-GF----RQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTT-TC----CCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CC----CeEEEEECCC
Confidence 5899999999999999999998 83 4799999875
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.48 E-value=0.039 Score=48.85 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
.||+|||+|.-|.+.|..|+++ +. +++|+++++.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~-~~---~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKH-HS---RAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CS---SCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhc-CC---CCeEEEEeCCCC
Confidence 5999999999999999999876 31 279999988763
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.23 Score=41.94 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=30.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|.|+|+|.+|...+..+... |. .+|+++++++++.+
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~-G~----~~Vi~~d~~~~rl~ 65 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAM-GA----AQVVVTDLSATRLS 65 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TC----SEEEEEESCHHHHH
T ss_pred CEEEEECCCccHHHHHHHHHHc-CC----ceEEeccCCHHHHH
Confidence 4899999999999888777666 61 37999999987554
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.45 E-value=0.028 Score=51.77 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=29.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|.+|.+.|..|++. |. ++|+|++++.
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~-G~----~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTR-GW----NNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-TC----CCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHc-CC----CcEEEEeCCC
Confidence 3799999999999999999998 71 4799998874
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.26 E-value=0.06 Score=43.99 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=34.4
Q ss_pred CCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 41 GDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 41 ~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..+.+++|||+|.+|.=+|..|++. | .+|+++.+.+..+.
T Consensus 24 ~~p~~vvIiGgG~IG~E~A~~~~~~-G-----~~Vtive~~~~il~ 63 (125)
T d1ojta2 24 EVPGKLLIIGGGIIGLEMGTVYSTL-G-----SRLDVVEMMDGLMQ 63 (125)
T ss_dssp CCCSEEEEESCSHHHHHHHHHHHHH-T-----CEEEEECSSSSSST
T ss_pred ccCCeEEEECCCHHHHHHHHHhhcC-C-----CEEEEEEeeccccc
Confidence 3457999999999999999999998 8 89999999875443
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.034 Score=47.58 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=29.7
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-|+|||+|.-|.+.|..|+++ | ++|.++.+++
T Consensus 7 DviViGaG~~Gl~~A~~La~~-G-----~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVD-G-----KKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CCEEEEcCCC
Confidence 489999999999999999999 8 8999999876
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.02 E-value=0.033 Score=52.03 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=30.9
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|.+|+|||||--|.+.|..|++. | ++|+++..+.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~-g-----~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL-N-----KKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG-T-----CCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC-C-----CcEEEEECCC
Confidence 45899999999999999999988 7 8999998875
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.085 Score=53.62 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=41.8
Q ss_pred HHHhHHHhhhhcCCCCCC---ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 26 EERLDELRRLMGKAEGDP---LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~---mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|+|.|.=.|+.|...+.. .||+|||+|+.|+-++..|+.. |. ..++++|.+.
T Consensus 5 e~rYdRQlrlwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~-GV----g~itivD~d~ 59 (529)
T d1yova1 5 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLP-GI----GSFTIIDGNQ 59 (529)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTT-TC----SEEEEECCSB
T ss_pred hhhhhHHHHhhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHh-cC----CEEEEEcCCc
Confidence 577887777777654433 6899999999999999999998 83 5899998764
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.66 E-value=0.064 Score=47.86 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=32.4
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..+||+|||+|.-|.+.|..|++. | ++|+++.++++
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~-G-----~~v~l~E~~~~ 83 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMES-G-----YTVHLTDTAEK 83 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSSS
T ss_pred CCceEEEEcccHHHHHHHHHHHHh-c-----cceeeEeeccc
Confidence 457999999999999999999998 7 89999998764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=92.65 E-value=0.058 Score=44.82 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=30.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+||+|||+|..|..+|..|.+. + ++.+|+++++++.
T Consensus 3 krivIvGgG~~G~e~A~~l~~~-~---~~~~Vtlie~~~~ 38 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLA-D---PSIEVTLIEPNTD 38 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-C---TTSEEEEECSCSC
T ss_pred CcEEEECccHHHHHHHHHHHHc-C---CCCcEEEEECCCc
Confidence 5999999999999999999987 5 1247999987763
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.43 E-value=0.049 Score=49.41 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-|+|||+|..|++.|..|+++ | .+|+++++..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~-G-----~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQ-G-----VKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 489999999999999999999 8 8999998864
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.07 E-value=0.055 Score=48.59 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=33.6
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.++||.|+|+ |.+|+.++..|.++ | ++|+..+|+....
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~-G-----~~V~~l~R~~~~~ 40 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDL-G-----HPTFLLVRESTAS 40 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHT-T-----CCEEEECCCCCTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC-C-----CeEEEEECCCccc
Confidence 4689999997 99999999999998 8 9999999987543
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.07 E-value=0.17 Score=43.86 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.9
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
|.||+|.|.|.+|..++..+.++
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~ 23 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ 23 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC
T ss_pred CeEEEEECCCHHHHHHHHHHHhC
Confidence 46999999999999999999876
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.84 E-value=0.12 Score=41.39 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=30.7
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
...||+|+|+|..|.-++....+- | ++|.+++.+++
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~l-G-----~~v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRL-G-----VEVIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTT-T-----CEEEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHC-C-----CEEEEEcCCCC
Confidence 457999999999999999886665 7 89999998874
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.71 E-value=0.073 Score=45.90 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=28.9
Q ss_pred CCceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEE--EecCch
Q 012349 42 DPLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRI--WRRPGR 83 (465)
Q Consensus 42 ~~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l--~~r~~~ 83 (465)
+|++|.|.| +|.+|++++..|.++ | ++|.+ ..|+++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~-g-----~~v~v~~~~R~~~ 40 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEG-S-----DKFVAKGLVRSAQ 40 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHT-T-----TTCEEEEEESCHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC-C-----CcEEEEEEcCCHH
Confidence 578999999 499999999999998 7 66544 456654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.12 Score=46.89 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=30.5
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+++.|.| ++.+|.++|..|++. | ++|.+.+|+++.+++
T Consensus 7 K~alITGas~GIG~aia~~la~~-G-----~~Vi~~~r~~~~l~~ 45 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFARE-G-----AKVIATDINESKLQE 45 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEeCCHHHHHH
Confidence 3444445 589999999999999 8 899999999876553
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.30 E-value=0.35 Score=40.54 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=28.5
Q ss_pred HHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 156 EAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 156 eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
....+.|++++++|+........+.. .. +..||.++.-+-
T Consensus 59 ~~~~~~d~~f~~~~~~~s~~~~~~~~---~~---~~~VIDlSsdfR 98 (154)
T d2gz1a1 59 TAFEGVDIALFSAGSSTSAKYAPYAV---KA---GVVVVDNTSYFR 98 (154)
T ss_dssp TTTTTCSEEEECSCHHHHHHHHHHHH---HT---TCEEEECSSTTT
T ss_pred hhhhhhhhhhhccCccchhhHHhhhc---cc---cceehhcChhhh
Confidence 34578899999999887776666544 33 578888775543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.77 E-value=0.077 Score=47.64 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=30.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||.|.|+ |-+|+.++..|.++ | ++|+..+|++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~-g-----~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGK-N-----VEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTS-S-----EEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-C-----CEEEEeechh
Confidence 89999998 99999999999888 7 9999888865
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=90.65 E-value=0.25 Score=39.81 Aligned_cols=35 Identities=11% Similarity=0.024 Sum_probs=28.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
-|.|+|.|.+|..++..|. | ++|.+++.+++..+.
T Consensus 2 HivI~G~g~~g~~l~~~L~---~-----~~i~vi~~d~~~~~~ 36 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR---G-----SEVFVLAEDENVRKK 36 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC---G-----GGEEEEESCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHc---C-----CCCEEEEcchHHHHH
Confidence 4889999999999999884 3 568888888875543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.60 E-value=0.31 Score=42.50 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=30.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+-||.|||+|..|..-+.....- | ..|+++|.+.+..++
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~l-G-----A~V~v~D~~~~~~~~ 67 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRL-G-----AVVMATDVRAATKEQ 67 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCSTTHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHc-C-----CEEEEEeccHHHHHH
Confidence 45999999999999855554444 6 899999999876654
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=90.57 E-value=0.1 Score=46.20 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=30.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
-|+|||+|.-|.+.|..|+++ | ++|.++.+++.
T Consensus 4 DViIIGaG~aGl~aA~~la~~-G-----~~V~liEk~~~ 36 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEE-G-----ANVLLLDKGNK 36 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCCC
Confidence 499999999999999999999 8 89999998764
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=90.47 E-value=0.094 Score=43.65 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=26.9
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
||+|||+|..|.-+|..|++. .+|+++.+.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~~-------~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQT-------YEVTVIDKEP 32 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTTT-------SEEEEECSSS
T ss_pred eEEEECCcHHHHHHHHHHHcC-------CCEEEEeccc
Confidence 899999999999999998643 6899998754
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.33 E-value=0.38 Score=42.39 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=31.0
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+||.|.|+ |.+|+.+...|.++ |.+ ++|++++|++.
T Consensus 15 k~IlItGaTG~iG~~l~~~Ll~~-g~~---~~v~~~~R~~~ 51 (232)
T d2bkaa1 15 KSVFILGASGETGRVLLKEILEQ-GLF---SKVTLIGRRKL 51 (232)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHH-TCC---SEEEEEESSCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhC-CCC---CEEEEEecChh
Confidence 68999997 99999999999988 732 58999999864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=90.32 E-value=0.22 Score=42.35 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=28.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|.|+|+|.+|.+.++.+... |. ..|.+.++++++.+
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~-g~----~~v~~~~~~~~k~~ 67 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVC-GA----SIIIAVDIVESRLE 67 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHH-TC----SEEEEEESCHHHHH
T ss_pred CEEEEeCCCHHHhhhhhccccc-cc----ceeeeeccHHHHHH
Confidence 5799999999999988877666 61 45667777775444
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=90.27 E-value=0.27 Score=39.07 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=32.0
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+.+|+|||+|..|.=+|..|..- | ..+.+|+++.+.+..+.
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l-~--~~~~~Vtli~~~~~iL~ 60 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAY-K--PKDGQVTLCYRGEMILR 60 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHH-C--CTTCEEEEEESSSSSST
T ss_pred cCCeEEEECCcHHHHHHHHHhhhc-c--cCCcEEEEEeccchhhc
Confidence 357999999999999999887754 3 11258999999775543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=90.21 E-value=0.15 Score=38.31 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=29.5
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+++|+|+|+|-.|..++..-.+= | .+|.+++.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L-G-----~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL-G-----IAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG-T-----EEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc-C-----CEEEEEcCCCC
Confidence 47899999999999998876665 7 89999998764
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=90.16 E-value=0.14 Score=48.05 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=33.0
Q ss_pred CCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 42 DPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 42 ~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.+++|+|+|+ |.+|++++..|.++ | ++|++..|+...
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~-G-----~~V~~l~R~~~~ 39 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAV-G-----HHVRAQVHSLKG 39 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHT-T-----CCEEEEESCSCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhC-C-----CeEEEEECCcch
Confidence 4578999996 99999999999998 7 999999998754
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=0.12 Score=46.92 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=28.8
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|+|||||.-|.+-|..|+++ | ++|+++.++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~-G-----~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDS-G-----LNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhC-C-----CCEEEEecCC
Confidence 89999999999999999999 8 8999998765
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=89.75 E-value=0.11 Score=48.04 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=29.8
Q ss_pred ceEEEECccHHHHHHHHHHHH-----hcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQD-----SYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~-----~~G~~~~~~~V~l~~r~~~~ 84 (465)
--|+|||+|..|.++|..|++ + | ++|+++.+++..
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~-G-----~~v~vlEr~~~~ 47 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKP-D-----LKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHST-T-----CCEEEECSSSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccC-C-----CcEEEEcCCCCC
Confidence 359999999999999999974 4 6 899999987643
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=89.67 E-value=0.29 Score=43.24 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=35.7
Q ss_pred hcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 36 MGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 36 ~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.+...-.-++|+|-|.|++|..+|..|.+. | ..|++++.+.+.+
T Consensus 20 ~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~-G-----akvvv~d~d~~~~ 63 (201)
T d1c1da1 20 RGLGSLDGLTVLVQGLGAVGGSLASLAAEA-G-----AQLLVADTDTERV 63 (201)
T ss_dssp TTCCCSTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHH
T ss_pred hCCCCCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEecchHHHH
Confidence 344334557999999999999999999998 8 8899998876543
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=89.36 E-value=0.14 Score=45.80 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=30.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|.|||+|.-|...|..|+++ | ++|.++.+++.
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~-G-----~~V~vlEk~~~ 38 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKL-G-----KSVTVFDNGKK 38 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCCC
Confidence 4599999999999999999999 7 89999999874
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=89.29 E-value=0.099 Score=44.90 Aligned_cols=38 Identities=24% Similarity=0.046 Sum_probs=28.8
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|+|+|+|.+|...++.+... |. ..|+..++++++.+
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~-Ga----~~Vi~~d~~~~r~~ 66 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLR-GA----GRIIGVGSRPICVE 66 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT-TC----SCEEEECCCHHHHH
T ss_pred CEEEEEcCCcchhhhhhhhhcc-cc----cccccccchhhhHH
Confidence 4799999999998877666554 61 36889998876544
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.21 E-value=1.7 Score=39.72 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=47.1
Q ss_pred CCCeeEeecchhHHH-hHHHhhhhcCCCCCC-ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 14 SNGLIHHTNGSLEER-LDELRRLMGKAEGDP-LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
|-|+....+-+||+- ...++.+..+....+ ++|.=||+|- |. ++..+++..| .+|+.++.++++++.
T Consensus 22 S~~~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~-G~-~a~~~a~~~g-----~~v~gi~ls~~q~~~ 90 (280)
T d2fk8a1 22 SCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGW-GT-TMRRAVERFD-----VNVIGLTLSKNQHAR 90 (280)
T ss_dssp SCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTT-SH-HHHHHHHHHC-----CEEEEEESCHHHHHH
T ss_pred eeEEeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCc-hH-HHHHHHHhCc-----eeEEEecchHHHHHH
Confidence 345665566688775 445777777776554 7999999994 53 4566676535 789999999887664
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=89.12 E-value=0.57 Score=42.15 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=37.8
Q ss_pred HhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 32 LRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 32 ~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++..++...-.-++|+|-|.|++|..+|..|.+. | ..|+..+.+...+
T Consensus 28 ~~~~~g~~~l~g~~v~IqG~GnVG~~~a~~L~~~-G-----akvv~~d~~~~~~ 75 (230)
T d1leha1 28 AKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTE-G-----AKLVVTDVNKAAV 75 (230)
T ss_dssp HHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSCHHHH
T ss_pred HHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-C-----CEEEeecccHHHH
Confidence 3445565555668999999999999999999998 7 7888887776543
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=89.04 E-value=0.12 Score=43.76 Aligned_cols=33 Identities=27% Similarity=0.165 Sum_probs=26.1
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEec
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRR 80 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r 80 (465)
++.+|+|||+|..|.-+|..|.+. | .+|++..+
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~-g-----~~v~i~~~ 34 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQA-G-----YQGLITVV 34 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHH-T-----CCSCEEEE
T ss_pred CCCCEEEECccHHHHHHHHHHHhc-C-----CceEEEEE
Confidence 345799999999999999999988 7 55554443
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.04 E-value=0.28 Score=41.37 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=30.3
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+|.|+|+|.+|...++.+... | .+|+.+++++++++.
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~-G-----~~vi~~~~~~~k~~~ 66 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAM-G-----AETYVISRSSRKRED 66 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-T-----CEEEEEESSSTTHHH
T ss_pred CEEEEECCCCcchhHHHHhhhc-c-----ccccccccchhHHHH
Confidence 6899999999999866655444 7 789999999876553
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=89.00 E-value=0.16 Score=47.34 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=30.9
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
..|+|||||.-|.++|..|.+. | .+|+++.++++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~-G-----~~v~i~Ek~~~ 41 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLREL-G-----RSVHVIETAGD 41 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSSS
T ss_pred CCEEEECccHHHHHHHHHHHhC-C-----CCEEEEEcCCC
Confidence 5799999999999999999988 7 89999998764
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.97 E-value=0.2 Score=41.98 Aligned_cols=34 Identities=26% Similarity=0.095 Sum_probs=27.8
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+|+|||+|..|.-+|..|.+. | .+|+++.+.+
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~-g-----~~v~v~~~~~ 36 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRAS-G-----WEGNIRLVGD 36 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT-T-----CCSEEEEECS
T ss_pred CCCEEEECCcHHHHHHHHHHHHc-C-----CceEEEEecC
Confidence 36899999999999999999988 6 6666665544
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.81 E-value=0.21 Score=45.29 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=31.1
Q ss_pred ceEEEE-Cc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaII-Ga-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+||++| |+ +.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 1 KKValITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~ 40 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD-G-----FAVAIADYNDATAKA 40 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 477655 65 66999999999999 8 899999999876553
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=88.81 E-value=0.19 Score=46.97 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=29.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
|||.|+|+ |-+|+.++..|.++ | ++|++++|-
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~-g-----~~V~~~d~~ 33 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQN-G-----HDVIILDNL 33 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEECC
Confidence 89999997 99999999999999 7 999999863
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=88.78 E-value=0.42 Score=37.73 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=31.3
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
.+.+|+|||+|..|.-+|..|++- + ..+.+|+++.|.+..+
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~~-~--~~g~~Vtli~~~~~il 57 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNAY-K--ARGGQVDLAYRGDMIL 57 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHH-S--CTTCEEEEEESSSSSS
T ss_pred cCCeEEEECCChHHHHHHHHhHhh-c--ccccccceeccccccc
Confidence 357999999999999999887653 1 0126899999977543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=88.49 E-value=0.26 Score=41.28 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=30.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|.|+|+|.+|...++.+... | .+|+.+++++++.+
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~-G-----a~vi~v~~~~~r~~ 64 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAY-G-----AFVVCTARSPRRLE 64 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CEEEEEcccccchhhHhhHhhh-c-----ccccccchHHHHHH
Confidence 5899999999999987766555 7 78999999987654
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.18 E-value=0.21 Score=44.53 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=27.9
Q ss_pred ceEE-EECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIV-GVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIa-IIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||+ |.|+ +.+|.++|..|++. | .+|.+.+|+++
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~-G-----a~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAA-G-----HQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECChH
Confidence 5665 5575 67999999999999 8 89999998764
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.01 E-value=0.52 Score=38.36 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=31.1
Q ss_pred CceEEEECccHHHHHHHHHHHHh---cCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS---YGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~---~G~~~~~~~V~l~~r~~~~~~ 86 (465)
..+|+|||+|..|.=+|..|++. .| .+|+++.+++..+.
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g-----~~Vt~i~~~~~~l~ 78 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALG-----TEVIQLFPEKGNMG 78 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHT-----CEEEEECSSSSTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcC-----CEEEEecccccCCc
Confidence 36899999999999999998742 24 78999998775443
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.94 E-value=0.28 Score=45.95 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=30.3
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-|||.|.|+ |-+|+.++..|.++ | ++|+..++..
T Consensus 15 nMKILVTGgsGfIGs~lv~~L~~~-g-----~~V~~~d~~~ 49 (363)
T d2c5aa1 15 NLKISITGAGGFIASHIARRLKHE-G-----HYVIASDWKK 49 (363)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-c-----CEEEEEeCCC
Confidence 489999995 99999999999998 7 9999998764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.82 E-value=0.34 Score=40.11 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=29.9
Q ss_pred ceEEEE--CccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGV--GAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaII--GaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
.++.|+ |+|.+|..+|..|++. | ++|+++.+.+..
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~-G-----~~Vtlv~~~~~~ 76 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATA-G-----HEVTIVSGVHLA 76 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHT-T-----CEEEEEESSCTT
T ss_pred CceEEEecCCChHHHHHHHHHHHc-C-----CeEEEEecCCcc
Confidence 456565 9999999999999999 8 899999997643
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.76 E-value=1.6 Score=37.21 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=20.9
Q ss_pred CCceEEEECccHHHHHHHHHHHHh
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~ 65 (465)
+.+||+|.|.|.+|..+...+..+
T Consensus 1 M~irIaINGfGRIGR~v~Ral~~~ 24 (172)
T d2czca2 1 MKVKVGVNGYGTIGKRVAYAVTKQ 24 (172)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTC
T ss_pred CcEEEEEECCCHHHHHHHHHHHhC
Confidence 357999999999999999988765
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=87.31 E-value=3.2 Score=34.51 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=57.6
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhhhhhhhhHHHHhchhhhHHhhhhcccccchhhhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDRATAEHLFEVINSREDVLRRLIRRCAYLKYVEARL 121 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~i~~~~l~~~i~~~~~~~~~~~~n~~~l~~~~~~l 121 (465)
|++|+|+|+ |++|+..-..+.++. +.++|....-+.. + +.|.+++++. +|++.- +.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~----d~f~v~~lsa~~N-~-----~~L~~q~~ef---------~Pk~v~-i~--- 58 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNL----DRYQVIALTANRN-V-----KDLADAAKRT---------NAKRAV-IA--- 58 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTG----GGEEEEEEEESSC-H-----HHHHHHHHHT---------TCSEEE-ES---
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCC----CCcEEEEEEeCCC-H-----HHHHHHHHhh---------ccccce-ec---
Confidence 579999997 999999888887651 1256776655542 2 2344444432 344431 10
Q ss_pred cCCcccchhhhhccccccCCCCCCCCeEEecCHHH----HhcCCCEEEEecC-cchHHHHHHHHH
Q 012349 122 GDRTLHADEILKDGFCLNMIDTPLCPLKVVTNLQE----AVWDADIVINGLP-STETKEVFEEIS 181 (465)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~t~dl~e----al~~aDiVIlaVp-s~~l~~vl~~l~ 181 (465)
+.. ..+.+.+.+.. .++.+....+. +..++|+|+.|+. ...++..+..+.
T Consensus 59 -d~~--~~~~l~~~~~~-------~~~~v~~g~~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~ 113 (150)
T d1r0ka2 59 -DPS--LYNDLKEALAG-------SSVEAAAGADALVEAAMMGADWTMAAIIGCAGLKATLAAIR 113 (150)
T ss_dssp -CGG--GHHHHHHHTTT-------CSSEEEESHHHHHHHHTSCCSEEEECCCSGGGHHHHHHHHH
T ss_pred -cHH--HHHHHHHHhhh-------cccccccCccchheecccccceeeeecCchhHHHHHHHHHh
Confidence 000 00000000000 12344333322 3457899999987 568888888775
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.00 E-value=0.37 Score=40.21 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=29.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|.|+|+|.+|...++.+... | .+|...++++++.+
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~-G-----~~Vi~~~~~~~~~~ 65 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAM-G-----LHVAAIDIDDAKLE 65 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CEEEEeeccccHHHHHHHHHHc-C-----CccceecchhhHHH
Confidence 5899999999998876655544 6 78999999886554
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.84 E-value=0.38 Score=37.23 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCceEEEECccHHH-HHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWG-SVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamG-salA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+||-+||.|-.| +++|..|.+. | ++|+.+|+..
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~-G-----~~VsGSD~~~ 42 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNE-G-----YQISGSDIAD 42 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHH-T-----CEEEEEESCC
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhC-C-----CEEEEEeCCC
Confidence 45799999999999 7889999999 8 9999999874
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=86.65 E-value=0.47 Score=43.35 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=30.4
Q ss_pred eEE-EEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 45 RIV-GVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 45 kIa-IIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
|++ |.| +|.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 26 K~alITGas~GIG~aiA~~la~~-G-----a~Vii~~r~~~~l~~ 64 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSL-G-----AQCVIASRKMDVLKA 64 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence 455 445 699999999999999 8 899999999876553
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=86.59 E-value=0.4 Score=40.76 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=30.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCe-eEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKV-LIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~-~V~l~~r~~~~~~ 86 (465)
.+|.|+|+|.+|...++.+... | . +|++.++++++.+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~-G-----a~~Vi~~~~~~~~~~ 67 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSL-G-----AENVIVIAGSPNRLK 67 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----BSEEEEEESCHHHHH
T ss_pred CEEEEECCCccchhheeccccc-c-----ccccccccccccccc
Confidence 6899999999998877766555 6 4 7999999887654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=86.48 E-value=0.34 Score=43.77 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=30.3
Q ss_pred eEEEE-Cc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 45 RIVGV-GA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 45 kIaII-Ga-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
||++| |+ +.+|.++|..|++. | .+|.+++|+++.+++
T Consensus 3 KValITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~l~~ 41 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKE-G-----LRVFVCARGEEGLRT 41 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 56655 54 67999999999999 8 899999999876553
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.17 E-value=0.4 Score=44.46 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=37.0
Q ss_pred HhHHHhhhhcCCCCCCceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 28 RLDELRRLMGKAEGDPLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 28 ~~~~~~~~~~~~~~~~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
|.++++...-+ ++++|.|.|+ |-+|+.++..|.+. | ++|+.+++.
T Consensus 4 ~~~~~~~~~~~---~~k~iLVTG~tGfIGs~lv~~L~~~-g-----~~V~~~d~~ 49 (341)
T d1sb8a_ 4 RYEELRKELPA---QPKVWLITGVAGFIGSNLLETLLKL-D-----QKVVGLDNF 49 (341)
T ss_dssp HHHHHHHHHHH---SCCEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEECC
T ss_pred hHHHHHHhCCC---CCCEEEEecCCCHHHHHHHHHHHHC-c-----CEEEEEECC
Confidence 66777775543 5678999996 99999999999998 7 999999863
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=85.96 E-value=0.26 Score=46.00 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=28.7
Q ss_pred CceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
||||.|.| +|-+|+.++..|.++ | ++|.+++++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~-g-----~~v~v~~~d 35 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNN-H-----PDVHVTVLD 35 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHH-C-----TTCEEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHC-C-----CCeEEEEEe
Confidence 68999999 599999999999999 7 777777665
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=85.91 E-value=0.42 Score=42.79 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=30.3
Q ss_pred ceEEEECc-cH--HHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVGA-GA--WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIGa-Ga--mGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
+++.|.|+ |. +|.++|..|++. | .+|.+.+|+++.
T Consensus 7 K~~lItGaag~~GIG~aiA~~la~~-G-----a~Vil~~~~~~~ 44 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQEQ-G-----AQLVLTGFDRLR 44 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHHHT-T-----CEEEEEECSCHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHc-C-----CEEEEEeCChHH
Confidence 67999996 55 999999999999 8 899999998753
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=85.25 E-value=0.41 Score=41.17 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=29.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-|+|||+|.-|...|..+++. | .+|.++.+++
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~-G-----~kV~vie~~~ 36 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQL-G-----FKTTCIEKRG 36 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-T-----CCEEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEecC
Confidence 489999999999999999998 7 8999998764
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=85.07 E-value=0.36 Score=41.62 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=28.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
-|+|||+|.-|...|..+++. | .+|.++.++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~-G-----~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMY-G-----QKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTT-T-----CCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CEEEEEecc
Confidence 489999999999999999998 7 789999875
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.98 E-value=0.35 Score=41.35 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=29.3
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
..+|+|||+|.-|..-|..+++. | .+|.++++..
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~-g-----~~v~vie~~~ 38 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARA-E-----LKPLLFEGWM 38 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT-T-----CCCEEECCSS
T ss_pred cceEEEECCCHHHHHHHHHHHHc-C-----CcEEEEEeec
Confidence 36899999999999988899988 7 7898887654
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=84.56 E-value=0.56 Score=41.78 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=29.6
Q ss_pred ceEEEECccH---HHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVGAGA---WGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIGaGa---mGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
++|.|.|++. +|.++|..|++. | .+|.+.+|+++.
T Consensus 6 K~~lITGass~~GIG~aiA~~l~~~-G-----~~V~i~~~~~~~ 43 (258)
T d1qsga_ 6 KRILVTGVASKLSIAYGIAQAMHRE-G-----AELAFTYQNDKL 43 (258)
T ss_dssp CEEEECCCCSTTSHHHHHHHHHHHT-T-----CEEEEEESSTTT
T ss_pred CEEEEECCCCchhHHHHHHHHHHHc-C-----CEEEEEeCCHHH
Confidence 6788888754 889999999999 8 899999998653
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.42 E-value=0.45 Score=41.12 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=29.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-|+|||+|.-|...|..+++. | .+|.+++.++
T Consensus 7 DviVIG~GpAGl~aA~~aa~~-G-----~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQL-G-----FNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CcEEEEEecC
Confidence 499999999999999999998 7 8999998764
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=84.07 E-value=0.57 Score=43.20 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=29.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
|||.|.|+ |-+|+.++..|.++ | ..+|+..++...
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~-g----~~~V~~ld~~~~ 36 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLRE-D----HYEVYGLDIGSD 36 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS-T----TCEEEEEESCCG
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-C----CCEEEEEeCCCc
Confidence 79999997 99999999999887 6 137888887654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.91 E-value=0.59 Score=38.69 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=29.6
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
-.+|.|+|+|.+|.+.+..+... | .+|...++++++.+
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~-g-----~~v~~~~~~~~r~~ 65 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAM-G-----LNVVAVDIGDEKLE 65 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHT-T-----CEEEEECSCHHHHH
T ss_pred CCEEEEeecccchhhhhHHHhcC-C-----CeEeccCCCHHHhh
Confidence 36899999999998866665555 6 78999998876544
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=83.89 E-value=0.64 Score=41.57 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=31.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+++.|.|+ +.+|.++|..|+++ | .+|.+.+|+.+.++
T Consensus 6 K~alItGas~GIG~aia~~l~~~-G-----~~V~~~~r~~~~~~ 43 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFARE-G-----ASLVAVDREERLLA 43 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 56778887 55999999999999 8 89999999986543
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.81 E-value=1.2 Score=36.02 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=31.1
Q ss_pred EecCHHHHhcCCCEEEEecCcchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 150 VVTNLQEAVWDADIVINGLPSTETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 150 ~t~dl~eal~~aDiVIlaVps~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
..+++.+++.++|+||++|+...+.++... +.+ +.+|+-+. |+-
T Consensus 80 ~~~~~~e~i~~~D~ivi~t~h~~f~~l~~~----~~~---~~~I~D~~-~~~ 123 (136)
T d1mv8a3 80 LVSDLDEVVASSDVLVLGNGDELFVDLVNK----TPS---GKKLVDLV-GFM 123 (136)
T ss_dssp BCSCHHHHHHHCSEEEECSCCGGGHHHHHS----CCT---TCEEEESS-SCC
T ss_pred eehhhhhhhhhceEEEEEeCCHHHHHHHHH----hcC---CCEEEECC-CCC
Confidence 457888999999999999999887765332 222 45666654 543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.50 E-value=0.65 Score=41.59 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=32.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+++.|.|+ +.+|.++|..|++. | ++|.+.+|+++.+++
T Consensus 8 K~~lITGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~l~~ 46 (244)
T d1pr9a_ 8 RRVLVTGAGKGIGRGTVQALHAT-G-----ARVVAVSRTQADLDS 46 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-C-----CEEEEEECCHHHHHH
Confidence 57888887 67999999999999 8 899999999875543
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=83.48 E-value=1.5 Score=39.07 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=30.8
Q ss_pred CCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 42 DPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 42 ~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
...||.|+|+|+-|..+|..+.+. +. .+++++|+..
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~-~~----~~i~~~D~~G 60 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDL-GV----KNVVAVDRKG 60 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TC----CEEEEEETTE
T ss_pred hhcEEEEEChHHHHHHHHHHHHHh-cc----cceEeeccee
Confidence 346999999999999999999887 62 6899999874
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.44 E-value=0.65 Score=41.94 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=32.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+.+.|.|+ +.+|.++|..|++. | .+|.+++|+++.+++
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~-G-----~~Vv~~~r~~~~l~~ 49 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQ-G-----LKVVGCARTVGNIEE 49 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 46778886 77999999999999 8 899999999876554
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=83.21 E-value=0.58 Score=42.31 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=30.0
Q ss_pred eEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 45 RIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 45 kIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
.+.|.| ++.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 7 valVTGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~ 44 (264)
T d1spxa_ 7 VAIITGSSNGIGRATAVLFARE-G-----AKVTITGRHAERLEE 44 (264)
T ss_dssp EEEETTTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 344445 478999999999999 8 899999999876654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=83.13 E-value=0.88 Score=37.96 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=28.5
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|.|+|+|.+|...++.+... | .++++.++++++.+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~-G-----a~~i~~~~~~~~~~ 68 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAM-G-----AHVVAFTTSEAKRE 68 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-T-----CEEEEEESSGGGHH
T ss_pred CEEEEeccchHHHHHHHHhhcc-c-----ccchhhccchhHHH
Confidence 6899999999998876665544 6 67878888776443
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=83.11 E-value=0.58 Score=43.19 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=31.7
Q ss_pred ceEEEEC-ccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchh
Q 012349 44 LRIVGVG-AGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRS 84 (465)
Q Consensus 44 mkIaIIG-aGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~ 84 (465)
+||.|.| +|-+|+.++..|.++ | ++|..++|+...
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~-g-----~~V~~~~r~~~~ 44 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTM-G-----ATVKGYSLTAPT 44 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESSCSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCCCc
Confidence 7999999 489999999999999 7 899999998754
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=83.00 E-value=0.69 Score=41.81 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=33.4
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
-+++.|.|+ +.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 gK~alITGas~GIG~aia~~la~~-G-----~~V~i~~r~~~~l~~ 45 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGL-G-----ARVYTCSRNEKELDE 45 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 367889995 78999999999999 8 899999999876554
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.93 E-value=0.62 Score=41.91 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=31.2
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+.|.|-|+ +.+|.++|..|+++ | .+|.+++|+++.+++
T Consensus 8 kv~lITGas~GIG~~ia~~la~~-G-----~~V~l~~r~~~~l~~ 46 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKL-K-----SKLVLWDINKHGLEE 46 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 35556676 55999999999999 8 899999999876654
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=82.90 E-value=0.51 Score=43.57 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=29.0
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-|+|||+|.-|+.+|..|+++ | ++|.+..+..
T Consensus 6 DviIVGsG~aG~v~A~~La~~-G-----~kVlvLEaG~ 37 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGA-G-----YKVAMFDIGE 37 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CEEEEECSSC
T ss_pred cEEEECcCHHHHHHHHHHhhC-C-----CeEEEEecCC
Confidence 489999999999999999998 8 8999998753
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=82.85 E-value=0.57 Score=41.02 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=28.7
Q ss_pred eEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhh
Q 012349 45 RIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSV 85 (465)
Q Consensus 45 kIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~ 85 (465)
++.|-|+ +.+|.++|..|++. | .+|.+.+|+++..
T Consensus 3 ~alITGas~GIG~aiA~~la~~-G-----a~V~i~~~~~~~~ 38 (241)
T d1uaya_ 3 SALVTGGASGLGRAAALALKAR-G-----YRVVVLDLRREGE 38 (241)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH-T-----CEEEEEESSCCSS
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCcccc
Confidence 4445565 88999999999999 8 8999999987643
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=82.83 E-value=0.48 Score=44.24 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=29.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-|.|||+|.-|+.+|..|+++ | ++|.+..+..
T Consensus 4 ~VIVVGsG~aG~v~A~rLaea-G-----~~VlvLEaG~ 35 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEA-G-----VQTLMLEMGQ 35 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred eEEEeCcCHHHHHHHHHHHHC-c-----CeEEEEecCC
Confidence 488999999999999999999 8 8999998853
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=82.81 E-value=0.49 Score=43.04 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=29.3
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-|+|||+|.-|.+.|..+++. | .+|.|+.+.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~-G-----~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDS-G-----AKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CcEEEEecCC
Confidence 599999999999999999999 8 8999998765
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=82.77 E-value=0.48 Score=39.49 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.2
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
.|+|||+|..|...|..+++. | .+|.++.++
T Consensus 3 DViIIGgGpaGl~AAi~aar~-G-----~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARK-G-----IRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTT-T-----CCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHc-C-----CeEEEEEEe
Confidence 589999999999999998888 7 789999764
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=82.67 E-value=0.46 Score=40.26 Aligned_cols=33 Identities=9% Similarity=0.087 Sum_probs=28.6
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+|+|||+|.-|..-|..+++. | .+|+++.+..
T Consensus 6 ~dVvIIGGGpaGl~AA~~~ar~-g-----~~v~iie~~~ 38 (190)
T d1trba1 6 SKLLILGSGPAGYTAAVYAARA-N-----LQPVLITGME 38 (190)
T ss_dssp EEEEEECCSHHHHHHHHHHHTT-T-----CCCEEECCSS
T ss_pred CcEEEECCCHHHHHHHHHHHHc-C-----CceEEEEeec
Confidence 5799999999999988888888 7 7899997654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=82.63 E-value=0.56 Score=40.57 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=29.0
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
..|.|||+|.-|...|..+++. | .+|.++.++
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~-G-----~~V~liE~~ 37 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQL-G-----IPTVLVEGQ 37 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHHC-C-----CcEEEEecC
Confidence 4699999999999999999999 8 899999865
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=82.40 E-value=0.51 Score=42.64 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=29.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
-|+|||+|.-|.+.|..|+++.| ++|.++++++.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G-----~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPN-----VQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTT-----SCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccC-----CeEEEEecCCC
Confidence 59999999999999999986326 89999998763
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.34 E-value=0.47 Score=39.11 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=29.7
Q ss_pred CceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
-++|.|||+|.+|..-+..|.+. | .+|++++..
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~-G-----A~VtVvap~ 45 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPT-G-----CKLTLVSPD 45 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGG-T-----CEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-C-----CEEEEEeCC
Confidence 36899999999999999999998 7 899999764
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=82.28 E-value=6.5 Score=32.54 Aligned_cols=36 Identities=8% Similarity=0.106 Sum_probs=26.8
Q ss_pred CceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 43 PLRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 43 ~mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|+||+|+|+ |++|+..-..+.++. +.++|....-+.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~----d~f~v~~Lsa~~ 37 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNP----EHFRVVALVAGK 37 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCT----TTEEEEEEEESS
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCC----CCcEEEEEEecC
Confidence 467999997 999999888887651 126777666554
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=82.13 E-value=0.68 Score=41.95 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=30.7
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+.+.|.|+ +.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 7 KvalITGas~GIG~aia~~la~~-G-----a~V~i~~r~~~~~~~ 45 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRY-G-----AKVVIADIADDHGQK 45 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45666675 67999999999999 8 899999999875543
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=82.12 E-value=1.1 Score=38.32 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.7
Q ss_pred CceEEEECccHHHHHHHHHHHHh
Q 012349 43 PLRIVGVGAGAWGSVFTAMLQDS 65 (465)
Q Consensus 43 ~mkIaIIGaGamGsalA~~La~~ 65 (465)
|+||+|-|.|.+|..+...+..+
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~ 23 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ 23 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC
Confidence 57999999999999999988766
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=82.10 E-value=0.82 Score=41.00 Aligned_cols=34 Identities=9% Similarity=-0.036 Sum_probs=29.9
Q ss_pred ceEEEECc-c--HHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-G--AWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-G--amGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
+++.|.|+ | .+|.++|..|++. | .+|.+.+|+++
T Consensus 6 K~alITGaag~~GIG~AiA~~la~~-G-----a~V~i~~r~~~ 42 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCFNQ-G-----ATLAFTYLNES 42 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTT-T-----CEEEEEESSTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHC-C-----CEEEEEeCCHH
Confidence 67889996 4 4999999999999 8 89999999864
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=81.91 E-value=3.8 Score=32.81 Aligned_cols=108 Identities=8% Similarity=-0.007 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCcchhccCchhhhhhccc-CchhH-HHHHHHhcCCChhhHhHhhcCCccc-chHHHH
Q 012349 306 TSKSVYFAHCTSEMVFITHLLAEEPEKLAGPLLADTYVTLL-KGRNA-WYGQELAKGRLTLDLGDSIKGKGMI-QGISAV 382 (465)
Q Consensus 306 n~~a~li~~~~~E~~~l~~a~G~~~~t~~g~glgDl~~T~~-~sRN~-~~G~~l~~g~~~~~~~~~~~~~~~v-EG~~t~ 382 (465)
|........++.|...++++.|.+++++. |.+..+. .|+-. ..+..+.++.- ..+-.+ -....+
T Consensus 13 N~l~~~~~~~~aEal~la~~~Gid~~~~~-----~~l~~~~~~S~~~~~~~~~~~~~~~--------~~~f~~~l~~KDl 79 (133)
T d1vpda1 13 QVIVALNIAAMSEALTLATKAGVNPDLVY-----QAIRGGLAGSTVLDAKAPMVMDRNF--------KPGFRIDLHIKDL 79 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHH-----HHHTTSTTCCHHHHHHHHHHHTTCC--------CCSSBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHH-----HHHHhccccchhhhhccchhhhccC--------CCCchHHHHHHHH
Confidence 33334556788999999999999999875 3333331 22221 12333333321 001112 345667
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCcccCCcHHHHHHHHHhc-------CCCHHHHHHHHHhcccCCC
Q 012349 383 KAFYELLSQSSLSVLHPEENKPVATVELCPILKMLYKILIM-------RESPIQAILEALRDETMND 442 (465)
Q Consensus 383 ~~v~~la~~~~~~~~~~~~~~~~~~v~~~Pi~~~vy~il~~-------~~~~~~~~~~ll~~~~~~~ 442 (465)
..+.+++++.|+ + +|+.+..++++.. +.+ ..++.+++++..+.|
T Consensus 80 ~l~~~~a~~~~~--------------~-~p~~~~~~~~~~~a~~~G~~~~D-~s~i~~~~~~~~~~~ 130 (133)
T d1vpda1 80 ANALDTSHGVGA--------------Q-LPLTAAVMEMMQALRADGHGNDD-HSALACYYEKLAKVE 130 (133)
T ss_dssp HHHHHHHHHHTC--------------C-CHHHHHHHHHHHHHHHTTCTTSB-GGGHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCC--------------C-ChHHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhCCC
Confidence 789999999994 6 7999998888742 222 344445555544433
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=81.46 E-value=0.68 Score=40.31 Aligned_cols=32 Identities=25% Similarity=0.296 Sum_probs=29.1
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-|+|||+|.-|...|..+++. | .+|.++.+++
T Consensus 8 DviIIG~GPaGlsaA~~aa~~-G-----~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADE-G-----LKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeccC
Confidence 489999999999999999998 7 8999998765
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.35 E-value=0.63 Score=42.14 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=32.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+++.|.|+ +.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 15 K~alITGassGIG~aiA~~la~~-G-----~~Vil~~r~~~~l~~ 53 (269)
T d1xu9a_ 15 KKVIVTGASKGIGREMAYHLAKM-G-----AHVVVTARSKETLQK 53 (269)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 57888897 45999999999999 8 899999999876654
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.19 E-value=0.81 Score=40.38 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.4
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCch
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGR 83 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~ 83 (465)
-||.|.|+ |.+|.++|..|+++ | ++|.+.+|+++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~-G-----~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKN-G-----YTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-T-----EEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-C-----CEEEEEECCch
Confidence 47899997 88999999999999 8 99999999864
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=81.09 E-value=0.88 Score=41.03 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=31.9
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+.+.|.|+ +.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~ 44 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEE-G-----TAIALLDMNREALEK 44 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 46778887 56999999999999 8 899999999876553
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.90 E-value=1.1 Score=40.12 Aligned_cols=38 Identities=8% Similarity=0.000 Sum_probs=31.3
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+.+.|-|+ +.+|.++|..|++. | .+|.+.+|+++.++.
T Consensus 7 K~alITGas~GIG~aia~~la~~-G-----~~V~~~~r~~~~~~~ 45 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAE-G-----AKVVFGDILDEEGKA 45 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45667787 67999999999999 8 899999999875543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.86 E-value=0.93 Score=40.47 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=32.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+++.|.|+ +.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 6 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~l~~ 44 (242)
T d1cyda_ 6 LRALVTGAGKGIGRDTVKALHAS-G-----AKVVAVTRTNSDLVS 44 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 57888897 57999999999999 8 899999999865543
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.79 E-value=0.76 Score=39.26 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=28.4
Q ss_pred eEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 45 RIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 45 kIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
-|.|||+|.-|...|..+++. | .+|.++.+..
T Consensus 5 DviVIG~GpaGl~aA~~aar~-G-----~kV~vIEk~~ 36 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQL-G-----QKVTIVEKGN 36 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-T-----CCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-----CEEEEEecCC
Confidence 489999999999999999998 7 7899998754
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=80.63 E-value=1.8 Score=36.35 Aligned_cols=38 Identities=13% Similarity=-0.050 Sum_probs=31.1
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
.+|+|+|+|.+|...++.+... | ...|...++++++++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~-G----~~~Vi~~d~~~~kl~ 66 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAA-G----ASRIIGVGTHKDKFP 66 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-T----CSEEEEECSCGGGHH
T ss_pred CEEEEECCCchhHHHHHHHHHc-C----CceeeccCChHHHHH
Confidence 5799999999999988887766 6 147889999887655
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=80.62 E-value=0.72 Score=43.06 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=32.2
Q ss_pred CCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 39 AEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 39 ~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
.+...--+.|||+|.-|+.+|..|+++ | .+|.+..+..
T Consensus 3 ~~~~~~dvIVVGsG~aG~v~A~rLaea-G-----~~VlvLEaG~ 40 (370)
T d3coxa1 3 ADGDRVPALVIGSGYGGAVAALRLTQA-G-----IPTQIVEMGR 40 (370)
T ss_dssp CTTCEEEEEEECCSHHHHHHHHHHHHT-T-----CCEEEECSSC
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHHHC-C-----CeEEEEeCCC
Confidence 444555689999999999999999998 8 8999998753
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=80.52 E-value=0.79 Score=42.13 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=35.9
Q ss_pred HHHhhhhcCCCCCCceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 30 DELRRLMGKAEGDPLRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 30 ~~~~~~~~~~~~~~mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|.+.+.+........-|.|||+|.-|..-|..+++. | .+|.++.+.+
T Consensus 6 ~~~~~~~~~~~~e~~DVvVIGaG~aGl~AA~~aa~~-G-----~~V~vlEK~~ 52 (317)
T d1qo8a2 6 DKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKA-G-----ANVILVDKAP 52 (317)
T ss_dssp HHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHH-T-----CCEEEECSSS
T ss_pred hhhhhhccCCCCCccCEEEECcCHHHHHHHHHHHHC-C-----CcEEEEeCCC
Confidence 445555544333345699999999999999999999 8 8999998754
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=80.39 E-value=0.94 Score=34.46 Aligned_cols=33 Identities=18% Similarity=0.071 Sum_probs=29.5
Q ss_pred ceEEEECccHHHH-HHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGS-VFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGs-alA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||=+||-|..|. ++|..|.+. | +.|+..|+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~-G-----~~VsGSD~~~ 35 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN-G-----NDVYGSNIEE 35 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-T-----CEEEEECSSC
T ss_pred cEEEEEeECHHHHHHHHHHHHhC-C-----CeEEEEeCCC
Confidence 7999999999886 889999888 8 8999999875
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.19 E-value=0.79 Score=41.33 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=31.1
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVDR 87 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~~ 87 (465)
+++.|-|+ +.+|.++|..|++. | .+|.+.+|+++.+++
T Consensus 12 K~alITGas~GIG~aia~~la~~-G-----a~V~~~~r~~~~~~~ 50 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATA-G-----ASVVVSDINADAANH 50 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTT-T-----CEEEEEESCHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-C-----CEEEEEECCHHHHHH
Confidence 45666665 67999999999999 8 899999999876553
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.07 E-value=0.82 Score=39.17 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=27.5
Q ss_pred EEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecC
Q 012349 46 IVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRP 81 (465)
Q Consensus 46 IaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~ 81 (465)
+.|||+|.-|...|..+++. | .+|.++..+
T Consensus 6 viIIG~GpaG~~aA~~aar~-G-----~kV~vIEk~ 35 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAEL-G-----ARAAVVESH 35 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHT-T-----CCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHC-C-----CEEEEEecc
Confidence 78999999999999999998 7 889999765
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.07 E-value=2.4 Score=39.27 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=31.3
Q ss_pred cCHHHHhc--CCCEEEEec-C-cchHHHHHHHHHHhhhccCCCCEEEEeecccc
Q 012349 152 TNLQEAVW--DADIVINGL-P-STETKEVFEEISRYWKERITVPVIISLAKGVE 201 (465)
Q Consensus 152 ~dl~eal~--~aDiVIlaV-p-s~~l~~vl~~l~~~l~~~~~~~ivIs~~kGi~ 201 (465)
.++.++++ ++|++|-+. + --+.+++++.++.+.+ +.+|..++|-.+
T Consensus 96 ~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~----~PIIFaLSNPt~ 145 (294)
T d1pj3a1 96 DTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINE----RPVIFALSNPTA 145 (294)
T ss_dssp SSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCS----SCEEEECCSSGG
T ss_pred hHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCC----CcEEEEccCCCC
Confidence 46777764 566655544 3 3467899998887654 478888888654
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.06 E-value=1.1 Score=34.22 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=27.7
Q ss_pred ceEEEECccHHHHHHHHHHHHhcCCCCCCeeEEEEecCc
Q 012349 44 LRIVGVGAGAWGSVFTAMLQDSYGYLRDKVLIRIWRRPG 82 (465)
Q Consensus 44 mkIaIIGaGamGsalA~~La~~~G~~~~~~~V~l~~r~~ 82 (465)
|||.|||+|+=-.+|+..|.++ . ++|+++--|+
T Consensus 1 MkVLviGsGgREHAia~~l~~s-~-----~~v~~~pGN~ 33 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQ-G-----YEVHFYPGNA 33 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHT-T-----CEEEEEECCT
T ss_pred CEEEEECCCHHHHHHHHHHhcC-C-----CeEEEecCCc
Confidence 8999999999999999999887 4 7777764443
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.01 E-value=0.88 Score=40.63 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=30.8
Q ss_pred ceEEEECc-cHHHHHHHHHHHHhcCCCCCCeeEEEEecCchhhh
Q 012349 44 LRIVGVGA-GAWGSVFTAMLQDSYGYLRDKVLIRIWRRPGRSVD 86 (465)
Q Consensus 44 mkIaIIGa-GamGsalA~~La~~~G~~~~~~~V~l~~r~~~~~~ 86 (465)
+++.|-|+ +.+|.++|..|++. | .+|.+.+|+++.++
T Consensus 6 K~~lITGas~GIG~aia~~l~~~-G-----~~V~~~~r~~~~l~ 43 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKE-G-----ARLVACDIEEGPLR 43 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-T-----CEEEEEESCHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-C-----CEEEEEECCHHHHH
Confidence 46777786 66999999999999 8 89999999976544
|