Citrus Sinensis ID: 012379

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
MHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
ccccEEcccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccEEEcccccEEEEcccEccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEccEEEEccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEccccccccccccccccc
mhgssihasnsvlgstrmdnsfvvlpkqrpqshgvpprprgssaqseasqsgkamdESFVVIYKsesasdgggphipppeggtngpmqpnnsgfhSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTnvlndafpiwhdgefgtinnfrlgrlpkipvewDEINAAWGQACLLLHTMCqyfrpkfpyrikiipmgsyprimdsnnntyelfgpvnlfwsTRYDKAMTLFLSCLKDFAEfanskdqennippdkcfklpykiendkvenySITQSFNKQENWTKALKYTLCNLKWALFWFVgntnfqpvsamsspaeVSAVGSLYAkrgadlksvgrnlskp
mhgssihasnsvlgstRMDNSFVVLPKQrpqshgvpprprgssAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSqtqveqplCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFanskdqennippdkcFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAkrgadlksvgrnlskp
MHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRgssaqseasqsgKAMDESFVVIYKSESASDgggphipppeggTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLkeklkieeeerkleaaieeteKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
***********************************************************VVI********************************HSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL**********************************************FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFAN*********PDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQP**********************************
*****************************************************************************************************KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACL***************************************************************RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFAN************CFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFV*****************************************
*********NSVLGSTRMDNSFVVLPK***************************MDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
********************SF***PK******************************S*****K*****************************FHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNT**************************************
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MHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query465 2.2.26 [Sep-21-2011]
Q9M367517 Beclin-1-like protein OS= yes no 0.974 0.876 0.804 0.0
Q54JI9855 Beclin-1-like protein B O yes no 0.668 0.363 0.389 8e-61
Q6GP52445 Beclin-1 OS=Xenopus laevi N/A no 0.827 0.865 0.325 1e-59
Q4A1L3445 Beclin-1 OS=Xenopus tropi yes no 0.827 0.865 0.325 3e-59
O88597448 Beclin-1 OS=Mus musculus yes no 0.817 0.848 0.328 4e-57
Q5ZKS6447 Beclin-1 OS=Gallus gallus yes no 0.819 0.852 0.327 4e-57
Q91XJ1448 Beclin-1 OS=Rattus norveg yes no 0.817 0.848 0.328 5e-57
Q4A1L4448 Beclin-1 OS=Bos taurus GN yes no 0.817 0.848 0.328 1e-56
Q14457450 Beclin-1 OS=Homo sapiens yes no 0.821 0.848 0.324 2e-56
Q4A1L5448 Beclin-1 OS=Sus scrofa GN yes no 0.812 0.843 0.328 2e-56
>sp|Q9M367|BECN1_ARATH Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2 SV=2 Back     alignment and function desciption
 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/456 (80%), Positives = 401/456 (87%), Gaps = 3/456 (0%)

Query: 2   HGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRG-SSAQSEASQSGKAMDESF 59
            GSSIH +NSVLGSTRMDNSFVVLP+ +P QS G+PPRPRG SS Q +A+QSGKAM+ESF
Sbjct: 53  QGSSIHGANSVLGSTRMDNSFVVLPRHKPPQSQGIPPRPRGASSPQPDATQSGKAMEESF 112

Query: 60  VVIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLC 119
           VV+YKSE  SD GG H    E G NGP+  N SGF++TI VL RAF+IA +QTQVEQPLC
Sbjct: 113 VVVYKSEPVSDSGGSHNLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQPLC 172

Query: 120 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLE 179
           LECMRVLSDKL+KEV+DVTRD+EAYEAC+QRLEGE +DVLSEADFLKEK KIEEEERKL 
Sbjct: 173 LECMRVLSDKLEKEVEDVTRDVEAYEACVQRLEGETQDVLSEADFLKEKKKIEEEERKLV 232

Query: 180 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 239
           AAIEETEKQNAEVN +LKELE K  RF ELE+RYWQEFNNFQFQLIAHQEERDAI +KIE
Sbjct: 233 AAIEETEKQNAEVNHQLKELEFKGNRFNELEDRYWQEFNNFQFQLIAHQEERDAILAKIE 292

Query: 240 VSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLH 299
           VSQAHLELL +TNVL DAFPI +DGEFGTINNFRLGRLP I VEWDEINAAWGQACLLLH
Sbjct: 293 VSQAHLELLNKTNVLIDAFPIRNDGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLLLH 352

Query: 300 TMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKD 359
           TMC YFRPKF  ++KI PMGSYPRI+DSNN TYELFGPVNLFWSTRYDKAMTL+L CLKD
Sbjct: 353 TMCNYFRPKFQCQVKIQPMGSYPRIVDSNNETYELFGPVNLFWSTRYDKAMTLYLMCLKD 412

Query: 360 FAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWA 419
           FA+FANSKDQENNIPPD C  LPYKIE DKV  YSITQSFNKQE+WTKALKYTLCNLKWA
Sbjct: 413 FADFANSKDQENNIPPDNCLNLPYKIEKDKVLGYSITQSFNKQESWTKALKYTLCNLKWA 472

Query: 420 LFWFVGNTNFQPVSA-MSSPAEVSAVGSLYAKRGAD 454
           L+WFVGNTNFQP+SA +S P+ +SA GSLYAKRG D
Sbjct: 473 LYWFVGNTNFQPLSATVSLPSNISAAGSLYAKRGPD 508

Arabidopsis thaliana (taxid: 3702)
>sp|Q54JI9|BECNB_DICDI Beclin-1-like protein B OS=Dictyostelium discoideum GN=atg6B PE=3 SV=1 Back     alignment and function description
>sp|Q6GP52|BECN1_XENLA Beclin-1 OS=Xenopus laevis GN=becn1 PE=2 SV=1 Back     alignment and function description
>sp|Q4A1L3|BECN1_XENTR Beclin-1 OS=Xenopus tropicalis GN=becn1 PE=2 SV=1 Back     alignment and function description
>sp|O88597|BECN1_MOUSE Beclin-1 OS=Mus musculus GN=Becn1 PE=1 SV=3 Back     alignment and function description
>sp|Q5ZKS6|BECN1_CHICK Beclin-1 OS=Gallus gallus GN=BECN1 PE=2 SV=1 Back     alignment and function description
>sp|Q91XJ1|BECN1_RAT Beclin-1 OS=Rattus norvegicus GN=Becn1 PE=1 SV=1 Back     alignment and function description
>sp|Q4A1L4|BECN1_BOVIN Beclin-1 OS=Bos taurus GN=BECN1 PE=2 SV=1 Back     alignment and function description
>sp|Q14457|BECN1_HUMAN Beclin-1 OS=Homo sapiens GN=BECN1 PE=1 SV=2 Back     alignment and function description
>sp|Q4A1L5|BECN1_PIG Beclin-1 OS=Sus scrofa GN=BECN1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
225454518522 PREDICTED: beclin 1 protein [Vitis vinif 1.0 0.890 0.847 0.0
73587480505 beclin 1 protein [Malus x domestica] 0.982 0.904 0.833 0.0
224067974516 predicted protein [Populus trichocarpa] 0.989 0.891 0.839 0.0
255564727523 Beclin-1, putative [Ricinus communis] gi 1.0 0.889 0.831 0.0
351724517509 beclin 1 protein [Glycine max] gi|735874 0.982 0.897 0.824 0.0
357456733517 Beclin 1 protein [Medicago truncatula] g 0.980 0.882 0.838 0.0
357456731 567 Beclin 1 protein [Medicago truncatula] g 0.980 0.804 0.742 0.0
356508412509 PREDICTED: beclin-1-like protein-like is 0.982 0.897 0.826 0.0
73587482508 beclin 1 protein [Medicago truncatula] 0.978 0.895 0.831 0.0
73587476511 beclin 1 protein [Gossypium raimondii] 0.987 0.898 0.832 0.0
>gi|225454518|ref|XP_002277370.1| PREDICTED: beclin 1 protein [Vitis vinifera] gi|297745431|emb|CBI40511.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/472 (84%), Positives = 428/472 (90%), Gaps = 7/472 (1%)

Query: 1   MHGSSIHASNSVLGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFV 60
           M GS IH + SVLGST MD+SFVVLPKQR Q+ GVPPRPRG + Q + SQSGKAM+ESFV
Sbjct: 51  MQGSLIHGAGSVLGSTHMDHSFVVLPKQRNQAQGVPPRPRGGAVQPDVSQSGKAMEESFV 110

Query: 61  V-------IYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQ 113
           +       +YK ESA++G G H+P PEGG +G +QPNNSGFH+TITVLKRAF+IAT+Q Q
Sbjct: 111 MLPPAPASVYKCESAAEGSGTHLPSPEGGPSGHLQPNNSGFHTTITVLKRAFDIATTQIQ 170

Query: 114 VEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEE 173
           VEQPLCLECMRVLSDKLDKEV+DV RDI+AYEACLQRLEGEARDVLSEADFLKEKLKIEE
Sbjct: 171 VEQPLCLECMRVLSDKLDKEVEDVNRDIQAYEACLQRLEGEARDVLSEADFLKEKLKIEE 230

Query: 174 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 233
           EERKLEAAIEETEKQ A+VNAE+KELELKS RFKELEERYW EFNNFQFQL +HQEERDA
Sbjct: 231 EERKLEAAIEETEKQCAQVNAEMKELELKSSRFKELEERYWHEFNNFQFQLTSHQEERDA 290

Query: 234 ISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQ 293
           I +KIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQ
Sbjct: 291 ILAKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQ 350

Query: 294 ACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLF 353
           ACLLLHTM QYFRPKF YRIKIIPMGSYPRI DSNN+TYELFGPVNLFWSTRYDKAMTLF
Sbjct: 351 ACLLLHTMVQYFRPKFQYRIKIIPMGSYPRITDSNNSTYELFGPVNLFWSTRYDKAMTLF 410

Query: 354 LSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTL 413
           L+CLKDFA+FANSKDQENNIPP+KCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTL
Sbjct: 411 LTCLKDFADFANSKDQENNIPPEKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTL 470

Query: 414 CNLKWALFWFVGNTNFQPVSAMSSPAEVSAVGSLYAKRGADLKSVGRNLSKP 465
           CNLKWAL+WFVGNTNFQP+SAM S  EVSAVGSLY KR AD KS  RN S P
Sbjct: 471 CNLKWALYWFVGNTNFQPLSAMVSSPEVSAVGSLYTKRIADSKSEARNSSSP 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|73587480|emb|CAJ27522.1| beclin 1 protein [Malus x domestica] Back     alignment and taxonomy information
>gi|224067974|ref|XP_002302626.1| predicted protein [Populus trichocarpa] gi|222844352|gb|EEE81899.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564727|ref|XP_002523358.1| Beclin-1, putative [Ricinus communis] gi|223537446|gb|EEF39074.1| Beclin-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351724517|ref|NP_001238340.1| beclin 1 protein [Glycine max] gi|73587474|emb|CAJ27519.1| beclin 1 protein [Glycine max] Back     alignment and taxonomy information
>gi|357456733|ref|XP_003598647.1| Beclin 1 protein [Medicago truncatula] gi|355487695|gb|AES68898.1| Beclin 1 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357456731|ref|XP_003598646.1| Beclin 1 protein [Medicago truncatula] gi|355487694|gb|AES68897.1| Beclin 1 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356508412|ref|XP_003522951.1| PREDICTED: beclin-1-like protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|73587482|emb|CAJ27523.1| beclin 1 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|73587476|emb|CAJ27520.1| beclin 1 protein [Gossypium raimondii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
TAIR|locus:2076715517 ATG6 "AT3G61710" [Arabidopsis 0.972 0.874 0.736 3.4e-180
MGI|MGI:1891828448 Becn1 "beclin 1, autophagy rel 0.658 0.683 0.358 3.8e-53
UNIPROTKB|Q14457450 BECN1 "Beclin-1" [Homo sapiens 0.658 0.68 0.355 6.3e-53
UNIPROTKB|Q4A1L4448 BECN1 "Beclin-1" [Bos taurus ( 0.658 0.683 0.355 8e-53
UNIPROTKB|E2RNW7463 AARSD1 "Uncharacterized protei 0.658 0.660 0.355 8e-53
UNIPROTKB|Q4A1L5448 BECN1 "Beclin-1" [Sus scrofa ( 0.658 0.683 0.355 8e-53
UNIPROTKB|Q5R878450 BECN1 "Beclin-1" [Pongo abelii 0.658 0.68 0.355 8e-53
UNIPROTKB|F1S1F6448 BECN1 "Beclin-1" [Sus scrofa ( 0.658 0.683 0.355 2.1e-52
UNIPROTKB|Q6GP52445 becn1 "Beclin-1" [Xenopus laev 0.658 0.687 0.355 2.7e-52
RGD|620190448 Becn1 "beclin 1, autophagy rel 0.658 0.683 0.355 2.7e-52
TAIR|locus:2076715 ATG6 "AT3G61710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1749 (620.7 bits), Expect = 3.4e-180, P = 3.4e-180
 Identities = 335/455 (73%), Positives = 367/455 (80%)

Query:     3 GSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRXXXXXX-XXXXXXKAMDESFV 60
             GSSIH +NSVLGSTRMDNSFVVLP+ +P QS G+PPRPR             KAM+ESFV
Sbjct:    54 GSSIHGANSVLGSTRMDNSFVVLPRHKPPQSQGIPPRPRGASSPQPDATQSGKAMEESFV 113

Query:    61 VIYKSESASDXXXXXXXXXXXXTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCL 120
             V+YKSE  SD             NGP+  N SGF++TI VL RAF+IA +QTQVEQPLCL
Sbjct:   114 VVYKSEPVSDSGGSHNLSLEVGQNGPLHSNTSGFNATINVLTRAFDIARTQTQVEQPLCL 173

Query:   121 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLXXXXXXXXXXXXXXX 180
             ECMRVLSDKL+KEV+DVTRD+EAYEAC+QRLEGE +DVLSEADFL               
Sbjct:   174 ECMRVLSDKLEKEVEDVTRDVEAYEACVQRLEGETQDVLSEADFLKEKKKIEEEERKLVA 233

Query:   181 XXXXXXKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 240
                   KQNAEVN +LKELE K  RF ELE+RYWQEFNNFQFQLIAHQEERDAI +KIEV
Sbjct:   234 AIEETEKQNAEVNHQLKELEFKGNRFNELEDRYWQEFNNFQFQLIAHQEERDAILAKIEV 293

Query:   241 SQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHT 300
             SQAHLELL +TNVL DAFPI +DGEFGTINNFRLGRLP I VEWDEINAAWGQACLLLHT
Sbjct:   294 SQAHLELLNKTNVLIDAFPIRNDGEFGTINNFRLGRLPAIKVEWDEINAAWGQACLLLHT 353

Query:   301 MCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDF 360
             MC YFRPKF  ++KI PMGSYPRI+DSNN TYELFGPVNLFWSTRYDKAMTL+L CLKDF
Sbjct:   354 MCNYFRPKFQCQVKIQPMGSYPRIVDSNNETYELFGPVNLFWSTRYDKAMTLYLMCLKDF 413

Query:   361 AEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWAL 420
             A+FANSKDQENNIPPD C  LPYKIE DKV  YSITQSFNKQE+WTKALKYTLCNLKWAL
Sbjct:   414 ADFANSKDQENNIPPDNCLNLPYKIEKDKVLGYSITQSFNKQESWTKALKYTLCNLKWAL 473

Query:   421 FWFVGNTNFQPVSA-MSSPAEVSAVGSLYAKRGAD 454
             +WFVGNTNFQP+SA +S P+ +SA GSLYAKRG D
Sbjct:   474 YWFVGNTNFQPLSATVSLPSNISAAGSLYAKRGPD 508
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0006914 "autophagy" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0000045 "autophagic vacuole assembly" evidence=IGI
GO:0000407 "pre-autophagosomal structure" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=IGI
GO:0009846 "pollen germination" evidence=IMP
GO:0050832 "defense response to fungus" evidence=IEP
MGI|MGI:1891828 Becn1 "beclin 1, autophagy related" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q14457 BECN1 "Beclin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4A1L4 BECN1 "Beclin-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNW7 AARSD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q4A1L5 BECN1 "Beclin-1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R878 BECN1 "Beclin-1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1F6 BECN1 "Beclin-1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GP52 becn1 "Beclin-1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
RGD|620190 Becn1 "beclin 1, autophagy related" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5R878BECN1_PONABNo assigned EC number0.32420.82150.8488yesno
Q91XJ1BECN1_RATNo assigned EC number0.32800.81720.8482yesno
Q9M367BECN1_ARATHNo assigned EC number0.80480.97410.8762yesno
Q5ZKS6BECN1_CHICKNo assigned EC number0.32720.81930.8523yesno
Q14457BECN1_HUMANNo assigned EC number0.32420.82150.8488yesno
Q4A1L5BECN1_PIGNo assigned EC number0.32880.81290.8437yesno
Q4A1L3BECN1_XENTRNo assigned EC number0.32560.82790.8651yesno
O88597BECN1_MOUSENo assigned EC number0.32800.81720.8482yesno
Q4A1L4BECN1_BOVINNo assigned EC number0.32800.81720.8482yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
atg6
SubName- Full=Chromosome chr15 scaffold_40, whole genome shotgun sequence; (522 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002733001
SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (815 aa)
    • • 0.632

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
pfam04111356 pfam04111, APG6, Autophagy protein Apg6 3e-76
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 1e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-06
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 2e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-05
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 4e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 1e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 1e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-04
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 4e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 9e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
PRK03918880 PRK03918, PRK03918, chromosome segregation protein 0.002
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
pfam12325121 pfam12325, TMF_TATA_bd, TATA element modulatory fa 0.002
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.002
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 0.003
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 0.003
COG2433652 COG2433, COG2433, Uncharacterized conserved protei 0.003
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.004
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6 Back     alignment and domain information 
 Score =  242 bits (618), Expect = 3e-76
 Identities = 119/356 (33%), Positives = 185/356 (51%), Gaps = 40/356 (11%)

Query: 98  ITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD 157
           +  +   F+I +SQT ++ PLC EC  +L ++LD E+ D  ++ + Y+  L +LE +  +
Sbjct: 2   VKAMTNLFDILSSQTNIDHPLCEECADILLERLDSELRDAEKERDTYKQYLSKLESQNVE 61

Query: 158 VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 217
           + +      E  ++++EE +L   +EE EK++ +++ EL EL+ + ++ +  E +Y +E+
Sbjct: 62  ISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREY 121

Query: 218 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 277
           N F    +  ++   ++  + E S   L+ L++TN+ N  F I H G F TIN  RLGRL
Sbjct: 122 NLFDRNNLQLEDNLQSLELQYEYSLNQLDKLRKTNIFNATFHISHSGPFATINGLRLGRL 181

Query: 278 PKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIM----DSNNNT-- 331
           P + V W EINAAWGQ  LLL  + +     F  R +++P GS+  I     +S      
Sbjct: 182 PSVVVPWKEINAAWGQTVLLLAALAKKLGLNFV-RYRLVPFGSHSYIEKLMVNSVEYNNS 240

Query: 332 --------------YELFGPVNL--FWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPP 375
                          +L+    L  FW T++DKAM  FL CL  F         +     
Sbjct: 241 TTNAPGDWLILPVELDLYFSGGLKFFWDTKFDKAMVAFLDCLSQFTREVEKIATQ----- 295

Query: 376 DKCFKLPYKIENDK-----VEN----YSITQSFNKQENWTKALKYTLCNLKWALFW 422
              F LPY++E++K     VEN    YSI   FN  E WTKALK+ L NLKW L W
Sbjct: 296 ---FLLPYQMESEKGKINDVENSGGSYSIKYQFNSDEQWTKALKFMLTNLKWLLAW 348

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. Length = 356
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA binding Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 465
KOG2751447 consensus Beclin-like protein [Signal transduction 100.0
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 100.0
PF10186302 Atg14: UV radiation resistance protein and autopha 99.44
KOG2751447 consensus Beclin-like protein [Signal transduction 99.11
KOG2896377 consensus UV radiation resistance associated prote 98.62
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 97.44
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 96.98
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 96.86
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.09
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 95.89
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 95.8
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.7
PRK03918 880 chromosome segregation protein; Provisional 95.67
KOG0979 1072 consensus Structural maintenance of chromosome pro 95.66
PHA02562562 46 endonuclease subunit; Provisional 95.65
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.65
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 95.57
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 95.48
PRK11637428 AmiB activator; Provisional 95.45
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.16
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 95.05
PRK11637428 AmiB activator; Provisional 95.04
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 94.95
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 94.73
COG4942420 Membrane-bound metallopeptidase [Cell division and 94.69
KOG0996 1293 consensus Structural maintenance of chromosome pro 94.61
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 94.43
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.39
PRK09039343 hypothetical protein; Validated 94.29
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 94.2
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 94.13
PF13851201 GAS: Growth-arrest specific micro-tubule binding 94.13
KOG0994 1758 consensus Extracellular matrix glycoprotein Lamini 94.09
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 94.03
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 93.97
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 93.94
PRK03918 880 chromosome segregation protein; Provisional 93.91
PRK02224880 chromosome segregation protein; Provisional 93.82
PHA02562562 46 endonuclease subunit; Provisional 93.81
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.71
PRK02224880 chromosome segregation protein; Provisional 93.67
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 93.6
PRK10884206 SH3 domain-containing protein; Provisional 93.25
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 93.22
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 93.21
KOG0995 581 consensus Centromere-associated protein HEC1 [Cell 93.2
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 93.14
PRK04863 1486 mukB cell division protein MukB; Provisional 93.0
COG2433652 Uncharacterized conserved protein [Function unknow 92.97
PF10211189 Ax_dynein_light: Axonemal dynein light chain; Inte 92.96
COG4026290 Uncharacterized protein containing TOPRIM domain, 92.9
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 92.84
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 92.81
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 92.8
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 92.74
PRK04778569 septation ring formation regulator EzrA; Provision 92.63
COG4372499 Uncharacterized protein conserved in bacteria with 92.55
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 92.29
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 92.18
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 92.15
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 92.14
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 92.06
KOG0243 1041 consensus Kinesin-like protein [Cytoskeleton] 92.01
COG4985289 ABC-type phosphate transport system, auxiliary com 91.99
PRK10884206 SH3 domain-containing protein; Provisional 91.94
PRK04863 1486 mukB cell division protein MukB; Provisional 91.84
PF15035182 Rootletin: Ciliary rootlet component, centrosome c 91.83
KOG4673 961 consensus Transcription factor TMF, TATA element m 91.8
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 91.66
KOG0999 772 consensus Microtubule-associated protein Bicaudal- 91.65
KOG0964 1200 consensus Structural maintenance of chromosome pro 91.6
PF06120301 Phage_HK97_TLTM: Tail length tape measure protein; 91.54
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 91.49
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 91.47
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 91.44
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 91.43
PF1528525 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 91.35
PF00038312 Filament: Intermediate filament protein; InterPro: 91.21
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 91.04
KOG09961293 consensus Structural maintenance of chromosome pro 90.92
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 90.85
KOG2072988 consensus Translation initiation factor 3, subunit 90.76
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 90.75
KOG2391365 consensus Vacuolar sorting protein/ubiquitin recep 90.63
COG4942420 Membrane-bound metallopeptidase [Cell division and 90.56
PRK04778569 septation ring formation regulator EzrA; Provision 90.53
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.53
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 90.47
TIGR006061311 rad50 rad50. This family is based on the phylogeno 90.45
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 90.39
PRK09039343 hypothetical protein; Validated 90.27
PF00038312 Filament: Intermediate filament protein; InterPro: 90.24
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 90.16
PF10481307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 90.11
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 90.06
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 89.94
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 89.77
PRK01156 895 chromosome segregation protein; Provisional 89.76
PRK01156 895 chromosome segregation protein; Provisional 89.74
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 89.63
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 89.57
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 89.26
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 89.23
COG5185622 HEC1 Protein involved in chromosome segregation, i 89.23
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 89.23
COG4372499 Uncharacterized protein conserved in bacteria with 89.14
TIGR02977219 phageshock_pspA phage shock protein A. Members of 89.08
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 89.01
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 88.99
KOG2264 907 consensus Exostosin EXT1L [Signal transduction mec 88.98
PF10212518 TTKRSYEDQ: Predicted coiled-coil domain-containing 88.69
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 88.65
COG2433652 Uncharacterized conserved protein [Function unknow 88.44
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 88.34
TIGR01010362 BexC_CtrB_KpsE polysaccharide export inner-membran 88.28
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 87.99
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 87.84
KOG09331174 consensus Structural maintenance of chromosome pro 87.81
KOG0288 459 consensus WD40 repeat protein TipD [General functi 87.69
KOG1962216 consensus B-cell receptor-associated protein and r 87.54
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 87.38
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 87.36
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 87.17
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 87.15
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 87.08
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 87.04
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 87.01
PF15070617 GOLGA2L5: Putative golgin subfamily A member 2-lik 86.78
PF10186302 Atg14: UV radiation resistance protein and autopha 86.73
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 86.63
KOG0977546 consensus Nuclear envelope protein lamin, intermed 86.5
PRK09841 726 cryptic autophosphorylating protein tyrosine kinas 86.4
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 86.38
PRK00409782 recombination and DNA strand exchange inhibitor pr 86.08
COG5185622 HEC1 Protein involved in chromosome segregation, i 85.94
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 85.67
KOG0933 1174 consensus Structural maintenance of chromosome pro 85.44
PRK11519 719 tyrosine kinase; Provisional 85.37
KOG1899 861 consensus LAR transmembrane tyrosine phosphatase-i 85.37
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 85.37
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 85.28
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 85.25
PF05700221 BCAS2: Breast carcinoma amplified sequence 2 (BCAS 85.2
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 85.08
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 85.05
PF05701522 WEMBL: Weak chloroplast movement under blue light; 84.5
PRK00409782 recombination and DNA strand exchange inhibitor pr 84.38
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 84.32
PF1141484 Suppressor_APC: Adenomatous polyposis coli tumour 84.05
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 84.02
PF1232974 TMF_DNA_bd: TATA element modulatory factor 1 DNA b 83.83
PF14662193 CCDC155: Coiled-coil region of CCDC155 83.61
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 83.45
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 83.2
PF10267395 Tmemb_cc2: Predicted transmembrane and coiled-coil 83.16
PRK09841 726 cryptic autophosphorylating protein tyrosine kinas 83.1
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 83.04
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 82.91
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 82.67
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 82.62
TIGR01069771 mutS2 MutS2 family protein. Function of MutS2 is u 82.49
cd07674261 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A 82.37
KOG4438446 consensus Centromere-associated protein NUF2 [Cell 82.31
TIGR02231 525 conserved hypothetical protein. This family consis 82.29
PF11180192 DUF2968: Protein of unknown function (DUF2968); In 82.28
PRK10698222 phage shock protein PspA; Provisional 82.2
TIGR01000457 bacteriocin_acc bacteriocin secretion accessory pr 82.06
PF15066527 CAGE1: Cancer-associated gene protein 1 family 81.97
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 81.8
KOG0964 1200 consensus Structural maintenance of chromosome pro 81.77
PRK12704520 phosphodiesterase; Provisional 81.76
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 81.7
PF0864796 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395 81.69
PRK13169110 DNA replication intiation control protein YabA; Re 81.62
KOG4403575 consensus Cell surface glycoprotein STIM, contains 81.62
TIGR02231525 conserved hypothetical protein. This family consis 81.59
KOG1937521 consensus Uncharacterized conserved protein [Funct 81.57
PF05278269 PEARLI-4: Arabidopsis phospholipase-like protein ( 81.31
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 81.18
TIGR02338110 gimC_beta prefoldin, beta subunit, archaeal. Chape 81.11
PRK10361475 DNA recombination protein RmuC; Provisional 80.97
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 80.85
KOG4360596 consensus Uncharacterized coiled coil protein [Fun 80.82
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 80.68
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 80.67
cd00632105 Prefoldin_beta Prefoldin beta; Prefoldin is a hexa 80.66
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 80.4
PRK11281 1113 hypothetical protein; Provisional 80.35
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 80.28
KOG3647338 consensus Predicted coiled-coil protein [General f 80.28
PRK00106535 hypothetical protein; Provisional 80.23
KOG0979 1072 consensus Structural maintenance of chromosome pro 80.21
KOG0239 670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 80.11
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-105  Score=812.63  Aligned_cols=411  Identities=53%  Similarity=0.875  Sum_probs=374.8

Q ss_pred             CCccccccccccccccccccccccCCCC-CCCCCCCCCCCCCCCCccccCCCCCCCceEEEecCCCCCCCCCCCCCCCCC
Q 012379            3 GSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEG   81 (465)
Q Consensus         3 ~~~~~~~~~~~~~~~~d~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~es~v~l~~~~~~~~~~~~~~~~~~~   81 (465)
                      ..++|+..++.++.+||.+++|+|.+.+ |..+.|++++++.. ++.. ++.++.++||+.+...+..+....+-.....
T Consensus        22 ~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~~~~~~~p~r~~~~~~~~~~~~   99 (447)
T KOG2751|consen   22 LQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSVVVYFSPPVRDSDTEHNLSFEL   99 (447)
T ss_pred             cchhhhhhhhccccccchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccceecccCccccccccccccccc
Confidence            4679999999999999999999999865 99999999988877 5555 8888899999988776654443333333333


Q ss_pred             CCCCCCCCCCCccchhHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCH
Q 012379           82 GTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSE  161 (465)
Q Consensus        82 ~~~~~~~~~~~~ls~~i~~l~~lFdIlSs~s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~e  161 (465)
                      +-.+....+.+++++++++++++|+|||+|++||||+|.||++.|++.|+++++.+++|+++|++|+++|+++... .++
T Consensus       100 ~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~-~~~  178 (447)
T KOG2751|consen  100 GENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQD-VSE  178 (447)
T ss_pred             ccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cch
Confidence            3333445677889999999999999999999999999999999999999999999999999999999999877543 478


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012379          162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS  241 (465)
Q Consensus       162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~  241 (465)
                      +++.+|+++++.||++|.++|++++++.++++.++.+++.+..++.++|.+||++||.+++++.+++++++||++|++++
T Consensus       179 ~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s  258 (447)
T KOG2751|consen  179 EDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYS  258 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCC
Q 012379          242 QAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSY  321 (465)
Q Consensus       242 ~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~ykLvPmGS~  321 (465)
                      +.||++|++|||||.+|||||+|+|||||||||||+|.+||+|+||||||||+||||++|++++|++|. +|+||||||+
T Consensus       259 ~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~-~y~lvp~Gsh  337 (447)
T KOG2751|consen  259 QAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFV-RYRLVPMGSH  337 (447)
T ss_pred             HHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccc-eeeeecccch
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             ceeeccCC---ceeeccc--CCCCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCcccee---
Q 012379          322 PRIMDSNN---NTYELFG--PVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENY---  393 (465)
Q Consensus       322 SkI~~~~~---~~~~Lyg--~~~lf~~~kFD~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~kdkI~g~---  393 (465)
                      |+|++...   ..+++|+  +.+|||++|||+||+|||+||+||+++++++++        .+.|||.|++|+|+|.   
T Consensus       338 SyI~~~~~~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~~~k~~--------~~~lPy~ie~d~i~d~~~~  409 (447)
T KOG2751|consen  338 SYIKKRMVNLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADELEKKDT--------SFNLPYDIEKDKLNDPSSS  409 (447)
T ss_pred             hHHHHhccCCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHHHHhcCc--------ccCCcchhhcccccCCccc
Confidence            99987543   4567774  458999999999999999999999999998864        6999999999999986   


Q ss_pred             -eEEecCCCCchhhHHHHHHHhhHHHHHHHHhh
Q 012379          394 -SITQSFNKQENWTKALKYTLCNLKWALFWFVG  425 (465)
Q Consensus       394 -SIkl~~n~~e~WTkAlK~lLtNlKwlLaw~~~  425 (465)
                       +|++.||++++||+||||||||+||++|||+.
T Consensus       410 y~i~~~fN~De~WTrALkFmLTnlK~~~A~vss  442 (447)
T KOG2751|consen  410 YSIKVQFNSDENWTRALKFMLTNLKWLLAWVSS  442 (447)
T ss_pred             eeEEeeecchHHHHHHHHHHHhccHHHHHHHhh
Confidence             69999999999999999999999999999984

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0243 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12) Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms] Back     alignment and domain information
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11519 tyrosine kinase; Provisional Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>TIGR01069 mutS2 MutS2 family protein Back     alignment and domain information
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein Back     alignment and domain information
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [] Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only] Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4 Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal Back     alignment and domain information
>PRK10361 DNA recombination protein RmuC; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only] Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
4ddp_A210 Crystal Structure Of Beclin 1 Evolutionarily Conser 2e-42
3vp7_A220 Crystal Structure Of The Beta-Alpha Repeated, Autop 4e-15
>pdb|4DDP|A Chain A, Crystal Structure Of Beclin 1 Evolutionarily Conserved Domain(Ecd) Length = 210 Back     alignment and structure 
Iteration: 1

 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/207 (42%), Positives = 120/207 (57%), Gaps = 22/207 (10%)
Query: 229 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEIN 288
           +E  ++ +++  +Q  L+ LK+TNV N  F IWH G+FGTINNFRLGRLP +PVEW+EIN
Sbjct: 5   DELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEIN 64
Query: 289 AAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYEL----FGPVNLFWST 344
           AAWGQ  LLLH +      KF  R +++P G++  +    + + EL     G +  FW  
Sbjct: 65  AAWGQTVLLLHALANKMGLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDN 123
Query: 345 RYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYK--IENDKVEN-------YSI 395
           ++D AM  FL C++ F E     +          F LPY+  +E  K+E+       YSI
Sbjct: 124 KFDHAMVAFLDCVQQFKEEVEKGETR--------FCLPYRMDVEKGKIEDTGGSGGSYSI 175
Query: 396 TQSFNKQENWTKALKYTLCNLKWALFW 422
              FN +E WTKALK+ L NLKW L W
Sbjct: 176 KTQFNSEEQWTKALKFMLTNLKWGLAW 202
>pdb|3VP7|A Chain A, Crystal Structure Of The Beta-Alpha Repeated, Autophagy-Specific (Bara) Domain Of Vps30ATG6 Length = 220 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
4ddp_A210 Beclin-1; ECD, autophagy, membrane binding, membra 2e-81
3vp7_A220 Vacuolar protein sorting-associated protein 30; ta 3e-73
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 1e-21
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-04
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 5e-06
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-05
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 3e-04
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens} Length = 210 Back     alignment and structure
 Score =  249 bits (638), Expect = 2e-81
 Identities = 85/211 (40%), Positives = 120/211 (56%), Gaps = 22/211 (10%)

Query: 225 IAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEW 284
           +   +E  ++ +++  +Q  L+ LK+TNV N  F IWH G+FGTINNFRLGRLP +PVEW
Sbjct: 1   LELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEW 60

Query: 285 DEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNNTYEL----FGPVNL 340
           +EINAAWGQ  LLLH +      KF  R +++P G++  +    + + EL     G +  
Sbjct: 61  NEINAAWGQTVLLLHALANKMGLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRF 119

Query: 341 FWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDK---------VE 391
           FW  ++D AM  FL C++ F E             +  F LPY+++ +K           
Sbjct: 120 FWDNKFDHAMVAFLDCVQQFKEEVEKG--------ETRFCLPYRMDVEKGKIEDTGGSGG 171

Query: 392 NYSITQSFNKQENWTKALKYTLCNLKWALFW 422
           +YSI   FN +E WTKALK+ L NLKW L W
Sbjct: 172 SYSIKTQFNSEEQWTKALKFMLTNLKWGLAW 202
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae} Length = 220 Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Length = 96 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
4ddp_A210 Beclin-1; ECD, autophagy, membrane binding, membra 100.0
3vp7_A220 Vacuolar protein sorting-associated protein 30; ta 100.0
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 99.72
2p1l_B31 Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2 98.38
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 96.42
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 96.3
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 96.03
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 95.79
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 95.75
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.55
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.17
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.14
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 94.84
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 94.48
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 94.4
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 94.24
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.21
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 93.36
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 90.8
1l8d_A112 DNA double-strand break repair RAD50 ATPase; zinc 90.16
3bas_A89 Myosin heavy chain, striated muscle/general contro 90.14
2v4h_A110 NF-kappa-B essential modulator; transcription, met 89.99
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 89.49
3s4r_A93 Vimentin; alpha-helix, cytoskeleton, intermediate 88.91
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 88.69
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 88.62
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 88.36
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 87.68
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 87.67
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 86.79
3bas_A89 Myosin heavy chain, striated muscle/general contro 85.75
3nmd_A72 CGMP dependent protein kinase; leucine zipper, coi 83.49
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 83.44
2zqm_A117 Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9 82.96
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 82.19
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 82.01
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 81.98
3s9g_A104 Protein hexim1; cyclin T-binding domain (TBD), cyc 81.97
3iox_A 497 AGI/II, PA; alpha helix, PPII helix, supersandwich 81.47
1l8d_A112 DNA double-strand break repair RAD50 ATPase; zinc 81.35
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 80.78
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 80.25
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.1e-80  Score=588.13  Aligned_cols=192  Identities=44%  Similarity=0.900  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 012379          226 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF  305 (465)
Q Consensus       226 ~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l  305 (465)
                      ++++|++|+++||+++++|||+|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++
T Consensus         2 ~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l   81 (210)
T 4ddp_A            2 ELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKM   81 (210)
T ss_dssp             ------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceeeeecCCCceeeccCC--ceeecccCC--CCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 012379          306 RPKFPYRIKIIPMGSYPRIMDSNN--NTYELFGPV--NLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKL  381 (465)
Q Consensus       306 ~~~f~~~ykLvPmGS~SkI~~~~~--~~~~Lyg~~--~lf~~~kFD~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~L  381 (465)
                      +++|+ +|+|+||||+|+|++..+  .+|+||+++  ++|++++||+||+|||+||+||++++++.+        ++++|
T Consensus        82 ~~~f~-~y~L~P~GS~S~I~~~~~~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~~~~~--------~~~~l  152 (210)
T 4ddp_A           82 GLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGE--------TRFCL  152 (210)
T ss_dssp             TCCCS-SEEEECCGGGCEEEESSCTTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHHHCC---------CCCCC
T ss_pred             CCCcc-ceeEEecCCcceeeEecCCCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHHhcCC--------CCCCC
Confidence            99999 999999999999998653  589999754  789999999999999999999999998754        47999


Q ss_pred             ceee--eCCccc-------eeeEEecCCCCchhhHHHHHHHhhHHHHHHHHhhC
Q 012379          382 PYKI--ENDKVE-------NYSITQSFNKQENWTKALKYTLCNLKWALFWFVGN  426 (465)
Q Consensus       382 PY~I--~kdkI~-------g~SIkl~~n~~e~WTkAlK~lLtNlKwlLaw~~~~  426 (465)
                      ||+|  ++|||+       |+|||+++|++|+||+|||||||||||+|||++..
T Consensus       153 PY~I~~~~dkI~D~~~~~~~~SIrl~~n~~e~WTkAlK~mLtnlKw~La~~s~~  206 (210)
T 4ddp_A          153 PYRMDVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQ  206 (210)
T ss_dssp             SSCEETTTTEEECTTTTCCEEESCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEecCCCEecCccCCCCceEEEecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999  799997       79999999999999999999999999999999863
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A Back     alignment and structure
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Back     alignment and structure
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 465
d2ooca1104 a.24.10.6 (A:8-111) Histidine phosphotransferase S 0.004
>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Length = 104 Back     information, alignment and structure

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: SphA-like
domain: Histidine phosphotransferase ShpA
species: Caulobacter crescentus [TaxId: 155892]

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 105 FEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF 164
           F         +  +  E + +  ++       +      ++  +  ++G AR V   A  
Sbjct: 5   FAYLEGFAAGDFAVVDEVLALFREQAALWAPMLDPTHPGWKDAVHTVKGAARGV--GAFN 62

Query: 165 LKEKLK-IEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 205
           L E  +  E  +  LE      +    ++ A   E  L+S +
Sbjct: 63  LGEVCERCEAGQESLEGVRTALDAALLDIAAYAHEQALRSLK 104

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00