Citrus Sinensis ID: 012382

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
Protein Sequence
MVDLDCKTKMPSKSPKLSNKLQVSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLIASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSHEIEKKH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccHHEEEccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcccccccccccccccccEEEccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccccccccEEEEcccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccEEEccHHHHHHHHHHHHHHHHccHEEEEEEcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHccccccccEEEEEccccccHHHHHHccccccccHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mvdldcktkmpskspklsnklqvsiptpfrgatkspvacsdAACSAYEQYLRLPELrklwssrdfpnweneavLKPALQALEITFRFVSIvlsdprpyanrREFKRRLESLATSQIQLIASLcedddrsgtapivdlttengflarnrssaevwkvpggestlvnrtseysllprlatwqkseDAADKIMYIIECEMRgcrytlglgepnlagkpnleydavckphelhslkknpydhqinnhenqtLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDlhllmdpddflrlknqlsissssesgpfcfrsrglfeITKQSKelkhnvplilgvevdprggprVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGassdslsqlfleptyypslDAAKTFLGEFWSHEIEKKH
Flexible Loop (DISEMBL)
mvdldcktkmpskspklsnklqvsiPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNWENEAVLKPALQALEITFRFvsivlsdprpyaNRREFKRRLESLATSQIQLIASLCEDDDRSGTApivdlttengflarnrssaevwkvpggestlvnrtseysllprlatwqksedAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIeskqfeeasndcYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLsissssesgpfcFRSRGLFEITKqskelkhnvplilgvevdprggprVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSHEIEKKH
Low Complexity Region (SEG)
MVDLDCKTKMPSKSPKLSNKLQVSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLIASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHlvqalqaveaalKRFFYAYKQLLAVVMGSLEAKANGvvvvsgassdslsQLFLEPTYYPSLDAAKTFLGEFWSHEIEKKH
Disordered region (IsUnstruct)
***********************************PVACSDAACSAYEQYLRLPELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLIASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKN***********PFCFRSRGLFEITKQSKELKHNVPLILGVEVD*******************ERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSH******
Disordered Region (DISOPRED)
****DC*************************************CSAYEQYLRLPELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLIASLCEDDDRSGTAP*VDL*********************************SLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIV*RI***QFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQ***********FCFRSRGLFEITKQSKELKHNVPLILGVEVDPRG*PRVQEAAMRMYNEK***DFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANG*VVV*GASSDSLSQLFLEPTYYPSLDAAKTFLGEF*********
Disordered Region (DISEMBL)
*******************KLQVSIPTPF**********SDAACSAYEQYLRLPELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLIASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSHEIEKKH
Disordered Region (DISPRO)
*********************QVSIPTPF********ACSDAACSAYEQYLRLPELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLIASLCEDDD**********************SAEVWKVPGGESTLVNRTSEYSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSHE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDLDCKTKMPSKSPKLSNKLQVSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLIASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSHEIEKKH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	465	2.2.26 [Sep-21-2011]
O04203	435	Nematode resistance prote	yes	no	0.918	0.981	0.597	1e-155
Q9LY61	428	Nematode resistance prote	no	no	0.913	0.992	0.572	1e-137

>sp|O04203|HSPR2_ARATH Nematode resistance protein-like HSPRO2 OS=Arabidopsis thaliana GN=HSPRO2 PE=1 SV=1

 Score =  548 bits (1413), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/465 (59%), Positives = 340/465 (73%), Gaps = 38/465 (8%)

Query: 1   MVDLDCKTKMPS----KSPKLSNKLQVSIPTPFRGA-TKSPVACSDAA-CSAYEQYLRLP 54
           MVD+D K KM S     SPKLS+KL V+IP+PF+     SP++CS  A CSAYE YLRLP
Sbjct: 1   MVDMDWKRKMVSSDLPNSPKLSSKLHVTIPSPFKIVPVSSPISCSAPALCSAYELYLRLP 60

Query: 55  ELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATS 114
           ELRKLWSSRDFP W +E +LKPALQALEI+FR V  V SD RPY N RE+ RRL+SL T 
Sbjct: 61  ELRKLWSSRDFPQWTSEPILKPALQALEISFRLVFAVCSDTRPYINHREWNRRLDSLITK 120

Query: 115 QIQLIASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLP 174
           QIQL+A++CED++  G                   SAE   V GG S+L       SLLP
Sbjct: 121 QIQLVAAICEDEEEEGI------------------SAEA-PVGGGRSSL-------SLLP 154

Query: 175 RLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKN 234
           +LATW++SE    KI+Y I+ EM  C+YTLGLGE N+AGKPNL YDA+C+P+E++SLK N
Sbjct: 155 QLATWRRSEALGKKILYTIDNEMSRCKYTLGLGEQNIAGKPNLRYDAICRPNEIYSLKDN 214

Query: 235 PYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKL 294
           PY   I+NHENQTLY  HQILESWI+ +  LL RIVS IE ++F +ASND YLLE+IWK+
Sbjct: 215 PYADHIDNHENQTLYIIHQILESWIYASGNLLNRIVSSIEEEKFGKASNDVYLLEKIWKI 274

Query: 295 LSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILG 354
           L+EIEDLH+LMDP+DFL+LK QL I S+ ++  FCFRS+GL E+ K SK+L+  VP +L 
Sbjct: 275 LAEIEDLHMLMDPEDFLKLKKQLQIKSTGKNDAFCFRSKGLVEMMKMSKDLRQKVPAVLA 334

Query: 355 VEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGS 414
           VEVDP GGPR+QEAAM++Y  K E D  KIHL+Q +QAVEAA K FF+ Y+QL+A +MGS
Sbjct: 335 VEVDPTGGPRLQEAAMKLYARKTECD--KIHLLQGMQAVEAAAKSFFFGYRQLVAAMMGS 392

Query: 415 LEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSH 459
            E  A      S  S DSLSQ+F+EPTY+PSLDAAKTFLGEFWSH
Sbjct: 393 AEMNATA----SQESCDSLSQIFMEPTYFPSLDAAKTFLGEFWSH 433

Positive regulator of basal resistance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY61|HSPR1_ARATH Nematode resistance protein-like HSPRO1 OS=Arabidopsis thaliana GN=HSPRO1 PE=1 SV=1

 Score =  488 bits (1257), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/461 (57%), Positives = 322/461 (69%), Gaps = 36/461 (7%)

Query: 1   MVDLDCKTKMPSKSPKLSNKLQVSIPTPFR--GATKSPVACSDAACSAYEQYLRLPELRK 58
           M DLD + KM      +S KL V+IP P +    +    + S AACSAYE YLRLPELR 
Sbjct: 1   MADLDLQRKM------VSPKLHVTIPEPCKLSSVSSPISSSSSAACSAYELYLRLPELRN 54

Query: 59  LWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQL 118
           LWSS  FP+W +E VLKPALQALEITFR +  V SD RPY NRRE+ RRL+SL TSQI++
Sbjct: 55  LWSSLYFPHWISEPVLKPALQALEITFRLILTVASDTRPYINRREWIRRLDSLTTSQIKI 114

Query: 119 IASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLPRLAT 178
           +A++C D+D                   N S+A V           N  S  SLL  +AT
Sbjct: 115 VAAICGDEDN---------------YEENVSAAPV----------SNGWSSLSLLSEIAT 149

Query: 179 WQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDH 238
            + SE    KI+  IE EMR C+YTLGLGEPNLAGKP L+YDAVC P ELHSLK NPY  
Sbjct: 150 CRTSESVGQKILSTIENEMRWCKYTLGLGEPNLAGKPYLQYDAVCLPEELHSLKNNPYAD 209

Query: 239 QINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEI 298
            I N ENQ LYT+HQILESWI+ +  LL RI SRIE  +FE+AS+D YLLERIWKLLSEI
Sbjct: 210 HIENQENQMLYTSHQILESWIYVSVNLLYRIESRIEEGKFEKASSDVYLLERIWKLLSEI 269

Query: 299 EDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVD 358
           EDLH+LMDP+DFL++K QL I S+  +  FCFRS+GL E+ K SKEL+  VP +L VEVD
Sbjct: 270 EDLHILMDPEDFLKVKKQLQIKSTFPNDAFCFRSKGLVEMAKMSKELRQKVPAVLEVEVD 329

Query: 359 PRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAK 418
           P GGPR+QEAAM++Y+ K E  + KIHL+Q +QAVE+A KRFF+ Y++L+A ++G+ EA 
Sbjct: 330 PTGGPRLQEAAMKLYSRKTE--YEKIHLLQGMQAVESAAKRFFFGYQKLVAAMIGNAEAN 387

Query: 419 ANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSH 459
           AN   V +  S DSL+Q+F+EP YYPSLDAAKTFLGEFWS 
Sbjct: 388 ANR-TVANHESYDSLTQVFMEPPYYPSLDAAKTFLGEFWSQ 427

Positive regulator of basal resistance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
255571859	484	conserved hypothetical protein [Ricinus	0.982	0.944	0.692	0.0
225448363	476	PREDICTED: nematode resistance protein-l	0.974	0.951	0.703	0.0
147862427	467	hypothetical protein VITISV_017358 [Viti	0.954	0.950	0.714	0.0
224109344	459	predicted protein [Populus trichocarpa]	0.933	0.945	0.672	0.0
401834491	478	HSPRO [Nicotiana attenuata]	0.976	0.949	0.671	1e-180
224101115	453	predicted protein [Populus trichocarpa]	0.922	0.947	0.651	1e-174
297736638	474	unnamed protein product [Vitis vinifera]	0.918	0.900	0.668	1e-171
449441320	463	PREDICTED: nematode resistance protein-l	0.896	0.900	0.652	1e-162
21593007	435	putative nematode-resistance protein [Ar	0.918	0.981	0.6	1e-154
15225612	435	HS1 PRO-1 2-like protein [Arabidopsis th	0.918	0.981	0.597	1e-153

>gi|255571859|ref|XP_002526872.1| conserved hypothetical protein [Ricinus communis] gi|223533771|gb|EEF35503.1| conserved hypothetical protein [Ricinus communis]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/472 (69%), Positives = 390/472 (82%), Gaps = 15/472 (3%)

Query: 1   MVDLDCKTKMPS-----KSPKLSNKLQVSIP--TPFRGATK-SPVACSDAACSAYEQYLR 52
           MVDL+   KM S     KSPKLSNKL V+IP  TPFRG +  SPV+ SD+AC+AY+ YLR
Sbjct: 1   MVDLNWNAKMVSSDLSNKSPKLSNKLHVTIPSTTPFRGVSNISPVSASDSACAAYDHYLR 60

Query: 53  LPELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLA 112
           LPELRKLW+S+DFP+WENE+VLKPAL ALEITFRFVS VLSDPR Y NR+E+KRR+ESLA
Sbjct: 61  LPELRKLWNSKDFPDWENESVLKPALHALEITFRFVSTVLSDPRQYTNRKEWKRRIESLA 120

Query: 113 TSQIQLIASLCEDDDRS----GTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTS 168
           TSQI++I+ LCED+       GTAPIVDL++ NG LAR  S AEVWKV   E+T+VNRTS
Sbjct: 121 TSQIEIISLLCEDEQDDVEIRGTAPIVDLSSSNGVLARGGSYAEVWKV-SPETTVVNRTS 179

Query: 169 EYSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHEL 228
           E SLLPRLATWQKSED A KI+Y IECEMR C YTLG+GEPNL+GKPNL+YD VCKP+++
Sbjct: 180 ESSLLPRLATWQKSEDIALKILYSIECEMRRCPYTLGVGEPNLSGKPNLDYDTVCKPNDV 239

Query: 229 HSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLL 288
            +LKK PYD+ + NHENQTLYT HQILE WI   ++L+ R++ RIESK+ ++AS+DCY +
Sbjct: 240 RNLKKCPYDN-LENHENQTLYTTHQILECWIQVAKELINRVIKRIESKELDKASSDCYTI 298

Query: 289 ERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHN 348
           ERIWK+L+EIEDLHLLMDPDDFLRLK QL I S +E+ PFCFRS+ L E+T+  K+LKH 
Sbjct: 299 ERIWKVLTEIEDLHLLMDPDDFLRLKKQLVIKSDNETAPFCFRSKALVEMTRMCKDLKHK 358

Query: 349 VPLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLL 408
           VP ILGVEVDP GGPR+QEAAMR+Y+EK+E +  KIHL+Q LQA+EAALK+F+Y YKQLL
Sbjct: 359 VPEILGVEVDPNGGPRIQEAAMRLYSEKRESEVEKIHLLQGLQAMEAALKKFYYGYKQLL 418

Query: 409 AVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSHE 460
            VVMGSLEAK N  V+VS  S D LSQLFLEPT++PSLDAAKTFLG+FWSHE
Sbjct: 419 VVVMGSLEAKGNR-VLVSPESCDPLSQLFLEPTFFPSLDAAKTFLGDFWSHE 469

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448363|ref|XP_002268520.1| PREDICTED: nematode resistance protein-like HSPRO2 isoform 1 [Vitis vinifera]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/469 (70%), Positives = 383/469 (81%), Gaps = 16/469 (3%)

Query: 1   MVDLDCKTKM-----PSKSPKLSNKLQVSIPTPFRGATKSPVACSDAACSAYEQYLRLPE 55
           MVDLDC  KM     P KSPK SNKLQVSIP+ FR    S  +     CSAYE YLRL E
Sbjct: 1   MVDLDCTAKMVSPDMPKKSPKFSNKLQVSIPSAFRAGDLS--SAPSPECSAYEYYLRLSE 58

Query: 56  LRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQ 115
           L+KLW SR+FPNW+NE++++PALQALE+TFRFVS VLSDPRPYANRRE+KRRLESL T+Q
Sbjct: 59  LKKLWDSREFPNWKNESLIRPALQALELTFRFVSTVLSDPRPYANRREWKRRLESLTTNQ 118

Query: 116 IQLIASLCEDDDRS----GTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYS 171
           IQL+A LCE+++      GTAPI DL+  NG LAR+ S AEVWKVPG  + +V+RTSE S
Sbjct: 119 IQLVAILCEEEEEEGEMRGTAPISDLSLSNGVLARDGSCAEVWKVPGA-TPVVSRTSEAS 177

Query: 172 LLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSL 231
           LLPRLATW KSED A KIMY IECEMRGC YTLGLGEPNL GKPNLEYD VCKP ELHSL
Sbjct: 178 LLPRLATWPKSEDIAQKIMYSIECEMRGCPYTLGLGEPNLVGKPNLEYDLVCKPSELHSL 237

Query: 232 KKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERI 291
           K+NPYDH + N+ENQTLYT  QILESWI+T QQLLKRI  RIE +  E+AS+DC+LLERI
Sbjct: 238 KRNPYDH-VENYENQTLYTTSQILESWIYTAQQLLKRIAERIEERDLEKASSDCWLLERI 296

Query: 292 WKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPL 351
           WKLL++IEDLHLLMDPDDFLRLK QLSI SS ES PFCFRSRGL EITK SK+LKH VP 
Sbjct: 297 WKLLADIEDLHLLMDPDDFLRLKKQLSIKSSPESEPFCFRSRGLVEITKSSKDLKHKVPY 356

Query: 352 ILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVV 411
           +LGVEVDP+GGPRVQEA M++Y EK   +  KIHL+QALQA+E+ALKRFFYAYKQ++ +V
Sbjct: 357 LLGVEVDPKGGPRVQEAVMKLYREKVGSE--KIHLLQALQAIESALKRFFYAYKQVMVMV 414

Query: 412 MGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSHE 460
           MGS EA+ +  ++ S ++  SLSQ+F+EPTYYPSLDAAKTFLG+FW H+
Sbjct: 415 MGSSEARVSRPLLSSDSTD-SLSQIFMEPTYYPSLDAAKTFLGDFWDHQ 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862427|emb|CAN79750.1| hypothetical protein VITISV_017358 [Vitis vinifera]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/455 (71%), Positives = 377/455 (82%), Gaps = 11/455 (2%)

Query: 10  MPSKSPKLSNKLQVSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNWE 69
           MP KSPK SNKLQVSIP+ FR    S  +     CSAYE YLRL EL+KLW SR+FPNW+
Sbjct: 6   MPKKSPKFSNKLQVSIPSAFRAGDLS--SAPSPECSAYEYYLRLSELKKLWDSREFPNWK 63

Query: 70  NEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLIASLCEDDDRS 129
           NE++++PALQALE+TFRFVS VLSDPRPYANRRE+KRRLESL T+QIQL+A LCE+++  
Sbjct: 64  NESLIRPALQALELTFRFVSTVLSDPRPYANRREWKRRLESLTTNQIQLVAILCEEEEEE 123

Query: 130 ----GTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLPRLATWQKSEDA 185
               GTAPI DL+  NG LAR+ S AEVWKVPG  + +V+RTSE SLLPRLATW KSED 
Sbjct: 124 GEMRGTAPISDLSLSNGVLARDGSCAEVWKVPGA-TPVVSRTSEASLLPRLATWPKSEDI 182

Query: 186 ADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHEN 245
           A KIMY IECEMRGC YTLGLGEPNL GKPNLEYD VCKP ELHSLK+NPYDH + N+EN
Sbjct: 183 AQKIMYSIECEMRGCPYTLGLGEPNLVGKPNLEYDLVCKPSELHSLKRNPYDH-VENYEN 241

Query: 246 QTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLM 305
           QTLYT  QILESWI+T QQLLKRI  RIE +  E+AS+DC+LLERIWKLL++IEDLHLLM
Sbjct: 242 QTLYTTSQILESWIYTAQQLLKRIAERIEERDLEKASSDCWLLERIWKLLADIEDLHLLM 301

Query: 306 DPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGPRV 365
           DPDDFLRLK QLSI SS ES PFCFRSRGL EITK SK+LKH VP +LGVEVDP+GGPRV
Sbjct: 302 DPDDFLRLKKQLSIKSSPESEPFCFRSRGLVEITKSSKDLKHKVPYLLGVEVDPKGGPRV 361

Query: 366 QEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVV 425
           QEA M++Y EK   +  KIHL+QALQA+E+ALKRFFYAYKQ++ +VMGS EA+ +  ++ 
Sbjct: 362 QEAVMKLYREKVGSE--KIHLLQALQAIESALKRFFYAYKQVMVMVMGSSEARVSRPLLS 419

Query: 426 SGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSHE 460
           S  S+DSLSQ+F+EPTYYPSLDAAKTFLG+FW H+
Sbjct: 420 S-DSTDSLSQIFMEPTYYPSLDAAKTFLGDFWDHQ 453

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109344|ref|XP_002315166.1| predicted protein [Populus trichocarpa] gi|222864206|gb|EEF01337.1| predicted protein [Populus trichocarpa]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/470 (67%), Positives = 371/470 (78%), Gaps = 36/470 (7%)

Query: 1   MVDLDCKTKM-----PSKSPKLSNKLQVSIPT-PFRGATK-SPVACSDAACSAYEQYLRL 53
           MVDLD K KM     P+KSPKLSNKLQ+SIP  PFRG +  +P   SD++CSAYE   RL
Sbjct: 1   MVDLDWKAKMVSSDLPNKSPKLSNKLQISIPAIPFRGVSNITPTPASDSSCSAYEHCFRL 60

Query: 54  PELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLAT 113
            EL ++W+ ++FPNW+ E++LKPALQALEITFRF+S VLSD RPYANRRE  RR+ESL T
Sbjct: 61  AELHQIWNRKEFPNWKTESILKPALQALEITFRFISTVLSDARPYANRRELTRRIESLTT 120

Query: 114 SQIQLIASLCEDDDRS----GTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSE 169
           SQI+LIA + ED+       GTAPIVDL++ N                     +V++TSE
Sbjct: 121 SQIELIAIIIEDEAEGSTTRGTAPIVDLSSSN---------------------MVSKTSE 159

Query: 170 YSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELH 229
            SLLPRLATWQ SED A KI+Y IECEMR C YTLGLGEPNL GKPNLEYDAVC+P+E+H
Sbjct: 160 ASLLPRLATWQTSEDVAQKILYSIECEMRRCPYTLGLGEPNLTGKPNLEYDAVCRPNEIH 219

Query: 230 SLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLE 289
           +LKK+PYDH  NN ENQ+LYT HQILESWI   +Q+++R+  RIESK+F  A+NDCYL+E
Sbjct: 220 ALKKSPYDH-TNNQENQSLYTTHQILESWIHVAKQIIQRVTERIESKEFSRAANDCYLVE 278

Query: 290 RIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNV 349
           RIWKLL+EIEDLHLLMDPDDFLRLKNQL + S  E+ PFCFRSR L EITK  KELKH V
Sbjct: 279 RIWKLLAEIEDLHLLMDPDDFLRLKNQLQMRSLDETAPFCFRSRELVEITKSCKELKHKV 338

Query: 350 PLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLA 409
           P ILGVEVDP+GGPR+QEAAMR+Y+EK  R+F K++L+QALQA+E ALKRFFYAYKQ+L 
Sbjct: 339 PEILGVEVDPKGGPRIQEAAMRLYSEK--REFEKVYLLQALQAIEGALKRFFYAYKQVLV 396

Query: 410 VVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSH 459
           VVMGSLEAK NG V+VS  S DSL+QLFLEPTY+PSLDAAKTFLGE WSH
Sbjct: 397 VVMGSLEAKGNG-VLVSSESCDSLTQLFLEPTYFPSLDAAKTFLGESWSH 445

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|401834491|gb|AFQ23178.1| HSPRO [Nicotiana attenuata]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 317/472 (67%), Positives = 382/472 (80%), Gaps = 18/472 (3%)

Query: 1   MVDLDCKTKM-----PSKSPKLSNKLQVSIPT--PFRGATKSPVACSDAACSAYEQYLRL 53
           MVD D KTKM     PSKSP++SNKLQ+SIP   P R    S    S++ACSAYE YLRL
Sbjct: 1   MVDCDRKTKMISSDIPSKSPRISNKLQISIPAAAPIRLTELS--TASESACSAYEHYLRL 58

Query: 54  PELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLAT 113
           PEL+K+WSS +FP+W+NE++LKPALQ LE TFRFVSIVLSDPRPYANRRE+KRRLESLA 
Sbjct: 59  PELKKMWSSVEFPSWKNESLLKPALQGLETTFRFVSIVLSDPRPYANRREWKRRLESLAM 118

Query: 114 SQIQLIASLCEDDDRS----GTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSE 169
            QI++IA LCED++      GTAPI DLT+    LAR  SSAEVWK+   E+T+V++TSE
Sbjct: 119 DQIEIIALLCEDEEEDPETRGTAPIGDLTSSTSVLARQNSSAEVWKL-SDETTVVSQTSE 177

Query: 170 YSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELH 229
            SLLPRLA WQKSED A KIMY IECEMR C YTLGLGEPNL+GKP+LEYDAV KP E H
Sbjct: 178 ASLLPRLAAWQKSEDIAQKIMYSIECEMRRCPYTLGLGEPNLSGKPSLEYDAVVKPSEFH 237

Query: 230 SLKKNPYDH-QINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLL 288
           +LKK+P D   ++N EN+TLYT HQILE+WI+ ++ LLKRIV RI+ K +E+A NDC+LL
Sbjct: 238 ALKKSPSDRMNLDNFENRTLYTTHQILETWIYASKMLLKRIVERIDRKDYEKAVNDCWLL 297

Query: 289 ERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHN 348
           E+ WKLL+EIEDLHLLMDPDDFLRLKNQLSI +++ES  FCFRS+GL EIT+ SK+LKH 
Sbjct: 298 EKTWKLLTEIEDLHLLMDPDDFLRLKNQLSIKATAESELFCFRSKGLVEITRLSKDLKHK 357

Query: 349 VPLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLL 408
           VP IL VEVDP+GGPR+QEAAM ++  +K+    KIHL+QALQA+E A+KRF+Y+YKQLL
Sbjct: 358 VPNILDVEVDPQGGPRIQEAAMDLF--RKKESVEKIHLLQALQAIEMAVKRFYYSYKQLL 415

Query: 409 AVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSHE 460
            +VMGSLEAK N    ++  +SD+L+Q+FLEPTY+PSLDAAKTFLGE WSHE
Sbjct: 416 VIVMGSLEAKGN-TTFMAVDTSDALAQIFLEPTYFPSLDAAKTFLGEHWSHE 466

Source: Nicotiana attenuata

Species: Nicotiana attenuata

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101115|ref|XP_002312148.1| predicted protein [Populus trichocarpa] gi|222851968|gb|EEE89515.1| predicted protein [Populus trichocarpa]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 307/471 (65%), Positives = 363/471 (77%), Gaps = 42/471 (8%)

Query: 1   MVDLDCKTKM-----PSKSPKLSNKLQVSIPT-PFRGATKS-PVACSDAACSAYEQYLRL 53
           M+DLD K KM     P+K P+LS+KL VSIP   FRG + + P+  SD+ CSAY+ YLRL
Sbjct: 1   MIDLDWKAKMVSSDPPNKPPRLSSKLHVSIPAIQFRGISNTYPIPASDSVCSAYDYYLRL 60

Query: 54  PELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLAT 113
           PELRKLW+ ++F NW+ E++LKPALQALEITFRFVS VLSD RPYANRRE+ RR+ESL T
Sbjct: 61  PELRKLWNRKEFSNWKTESILKPALQALEITFRFVSTVLSDKRPYANRREWTRRIESLTT 120

Query: 114 SQIQLIASLCEDDDRS----GTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSE 169
           SQI+LIAS+ ED+       GTAPI DL++  G                           
Sbjct: 121 SQIELIASIIEDEAEDSTTRGTAPIADLSSTEG--------------------------- 153

Query: 170 YSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELH 229
            SLLPRLATWQ SED A KI+Y IECEMR C YTLGLGEPNL GKP LEYD VC+P+E+H
Sbjct: 154 ASLLPRLATWQTSEDVAQKILYSIECEMRRCPYTLGLGEPNLNGKPTLEYDTVCRPNEIH 213

Query: 230 SLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLE 289
           +LKK+PYDH I N ENQ++YT HQILESWI   QQ+++R+  RI SK+F +ASNDCYL+E
Sbjct: 214 ALKKSPYDH-IKNQENQSVYTTHQILESWIHVAQQIIQRVTERIGSKEFSKASNDCYLIE 272

Query: 290 RIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNV 349
           RIWKLL+EIEDLHLLMDPDDFLRLKNQL + S  E+ P+CFRSR L EITK  KELKH V
Sbjct: 273 RIWKLLAEIEDLHLLMDPDDFLRLKNQLQMRSLDENSPYCFRSRELVEITKSCKELKHKV 332

Query: 350 PLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLA 409
           P +LGVEVDP+GGPR+QEAAMR+Y+EKKE  F K++L+QALQA+E ALKRFFYAY+Q+L 
Sbjct: 333 PEVLGVEVDPKGGPRIQEAAMRLYSEKKE--FQKVYLLQALQAIEGALKRFFYAYQQVLV 390

Query: 410 VVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSHE 460
           V +GSLEAK NG V+VS  S DSL+QLFLEPTY+PSLDAAKTFLGE WSHE
Sbjct: 391 VAIGSLEAKGNG-VLVSSESCDSLTQLFLEPTYFPSLDAAKTFLGESWSHE 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736638|emb|CBI25509.3| unnamed protein product [Vitis vinifera]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/465 (66%), Positives = 362/465 (77%), Gaps = 38/465 (8%)

Query: 1   MVDLDCKTKM-----PSKSPKLSNKLQVSIPTPFRGATKSPVACSDAACSAYEQYLRLPE 55
           MVDLDC  KM     P KSPK SNKLQVSIP+ FR    S  +     CSAYE YLRL E
Sbjct: 1   MVDLDCTAKMVSPDMPKKSPKFSNKLQVSIPSAFRAGDLS--SAPSPECSAYEYYLRLSE 58

Query: 56  LRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQ 115
           L+KLW SR+FPNW+NE++++PALQALE+TFRFVS VLSDPRPYANRRE+KRRLESL T+Q
Sbjct: 59  LKKLWDSREFPNWKNESLIRPALQALELTFRFVSTVLSDPRPYANRREWKRRLESLTTNQ 118

Query: 116 IQLIASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLPR 175
           IQL+A LCE+++  G  P                           + +V+RTSE SLLPR
Sbjct: 119 IQLVAILCEEEEEEGEMP---------------------------TPVVSRTSEASLLPR 151

Query: 176 LATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNP 235
           LATW KSED A KIMY IECEMRGC YTLGLGEPNL GKPNLEYD VCKP ELHSLK+NP
Sbjct: 152 LATWPKSEDIAQKIMYSIECEMRGCPYTLGLGEPNLVGKPNLEYDLVCKPSELHSLKRNP 211

Query: 236 YDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLL 295
           YDH + N+ENQTLYT  QILESWI+T QQLLKRI  RIE +  E+AS+DC+LLERIWKLL
Sbjct: 212 YDH-VENYENQTLYTTSQILESWIYTAQQLLKRIAERIEERDLEKASSDCWLLERIWKLL 270

Query: 296 SEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGV 355
           ++IEDLHLLMDPDDFLRLK QLSI SS ES PFCFRSRGL EITK SK+LKH VP +LGV
Sbjct: 271 ADIEDLHLLMDPDDFLRLKKQLSIKSSPESEPFCFRSRGLVEITKSSKDLKHKVPYLLGV 330

Query: 356 EVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSL 415
           EVDP+GGPRVQEA M++Y EK   +  KIHL+QALQA+E+ALKRFFYAYKQ++ +VMGS 
Sbjct: 331 EVDPKGGPRVQEAVMKLYREKVGSE--KIHLLQALQAIESALKRFFYAYKQVMVMVMGSS 388

Query: 416 EAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSHE 460
           EA+ +  ++ S ++  SLSQ+F+EPTYYPSLDAAKTFLG+FW H+
Sbjct: 389 EARVSRPLLSSDSTD-SLSQIFMEPTYYPSLDAAKTFLGDFWDHQ 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441320|ref|XP_004138430.1| PREDICTED: nematode resistance protein-like HSPRO2-like [Cucumis sativus] gi|449517878|ref|XP_004165971.1| PREDICTED: nematode resistance protein-like HSPRO2-like [Cucumis sativus]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/446 (65%), Positives = 350/446 (78%), Gaps = 29/446 (6%)

Query: 15  PKLSNKLQVSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNWENEAVL 74
           P L+NKL +S+P  FR +  S    S ++CS+YE YLRL  LRKLWSS++FP W NE+VL
Sbjct: 29  PILNNKLNLSLPVSFRSSELS--TASPSSCSSYEHYLRLNHLRKLWSSKEFPEWRNESVL 86

Query: 75  KPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLIASLCEDDDRSGTA-- 132
           KP LQALEITFRF+S VLSDPRPYANRRE+KR+L+SL T+QIQLIA +CEDD+  G +  
Sbjct: 87  KPGLQALEITFRFISTVLSDPRPYANRREWKRKLQSLTTTQIQLIAMICEDDEEDGESRG 146

Query: 133 --PIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLPRLATWQKSEDAADKIM 190
             PIVDL++                    ++T+VNRTSE SLLPRLA+WQ SED A  I 
Sbjct: 147 RVPIVDLSS-------------------SDATVVNRTSESSLLPRLASWQSSEDIAQLIQ 187

Query: 191 YIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYT 250
           Y +ECEMR C YTLGLGEPNLAGKPNL+YD +CKP+ELHSL+K+PY+ QI N+ENQT+YT
Sbjct: 188 YSVECEMRRCPYTLGLGEPNLAGKPNLDYDLICKPNELHSLRKSPYE-QIENYENQTVYT 246

Query: 251 AHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDF 310
            HQILESWI++  +LLKRI  RIE K F  A+ DCY++ERIWKLL EIEDLHLLMDPDDF
Sbjct: 247 THQILESWIYSAHELLKRIEERIEKKDFAGAARDCYMMERIWKLLQEIEDLHLLMDPDDF 306

Query: 311 LRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGPRVQEAAM 370
           L+LKNQL+I S  ES  FCFRS  L EITKQ K+LKH VPLIL VEVDP GGPR+QEAAM
Sbjct: 307 LKLKNQLAIKSLQESEAFCFRSTTLVEITKQCKDLKHKVPLILDVEVDPMGGPRIQEAAM 366

Query: 371 RMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASS 430
           ++Y+EK+E +  KIHL+QALQA+E+ +K+FF+AYKQ+L +VMGSLE K N  VVVS  S 
Sbjct: 367 KLYSEKQESE--KIHLLQALQAIESGIKKFFFAYKQVLVMVMGSLEGKGNR-VVVSSNSD 423

Query: 431 DSLSQLFLEPTYYPSLDAAKTFLGEF 456
           DSLSQ+FLEPTY+PSLDAAKTFLG+ 
Sbjct: 424 DSLSQIFLEPTYFPSLDAAKTFLGDL 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593007|gb|AAM64956.1| putative nematode-resistance protein [Arabidopsis thaliana]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/465 (60%), Positives = 341/465 (73%), Gaps = 38/465 (8%)

Query: 1   MVDLDCKTKMPS----KSPKLSNKLQVSIPTPFRGA-TKSPVACSDAA-CSAYEQYLRLP 54
           MVD+D K KM S     SPKLS+KL V+IP+PF+     SP++CS  A CSAYE YLRLP
Sbjct: 1   MVDMDWKRKMVSSDLPNSPKLSSKLHVTIPSPFKIVPVSSPISCSAPALCSAYELYLRLP 60

Query: 55  ELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATS 114
           ELRKLWSSRDFP W +E +LKPALQALEI+FR V  V SD RPY N RE+ RRL+SL T 
Sbjct: 61  ELRKLWSSRDFPQWTSEPILKPALQALEISFRLVFAVCSDTRPYINHREWNRRLDSLITK 120

Query: 115 QIQLIASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLP 174
           QIQL+A++CED++  G                   SAE   V GG S+L       SLLP
Sbjct: 121 QIQLVAAICEDEEEEGI------------------SAEA-PVGGGRSSL-------SLLP 154

Query: 175 RLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKN 234
           +LATW++SE    KI+Y I+ EM  C+YTLGLGE N+AGKPNL YDA+C+P+E++SLK N
Sbjct: 155 QLATWRRSEALGKKILYTIDNEMSRCKYTLGLGEQNIAGKPNLRYDAICRPNEIYSLKDN 214

Query: 235 PYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKL 294
           PY   I+NHENQTLY  HQILESWI+ +  LL RIVS IE ++FE+ASND YLLE+IWK+
Sbjct: 215 PYADHIDNHENQTLYIIHQILESWIYASGNLLNRIVSSIEEEKFEKASNDVYLLEKIWKI 274

Query: 295 LSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILG 354
           L+EIEDLH+LMDP+DFL+LK QL I S+ ++  FCFRS+GL E+ K SK+L+  VP +L 
Sbjct: 275 LAEIEDLHMLMDPEDFLKLKKQLQIKSTGKNDAFCFRSKGLVEMMKMSKDLRQKVPAVLA 334

Query: 355 VEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGS 414
           VEVDP GGPR+QEAAM++Y  K E D  KIHL+Q +QAVEAA K FF+ Y+QL+A +MGS
Sbjct: 335 VEVDPTGGPRLQEAAMKLYARKTECD--KIHLLQGMQAVEAAAKSFFFGYRQLVAAMMGS 392

Query: 415 LEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSH 459
            E  A      S  S DSLSQ+F+EPTY+PSLDAAKTFLGEFWSH
Sbjct: 393 AEMNATA----SQESCDSLSQIFMEPTYFPSLDAAKTFLGEFWSH 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225612|ref|NP_181529.1| HS1 PRO-1 2-like protein [Arabidopsis thaliana] gi|75096959|sp|O04203.1|HSPR2_ARATH RecName: Full=Nematode resistance protein-like HSPRO2; AltName: Full=AKINbetagamma-interacting protein 2; AltName: Full=Ortholog of sugar beet HS1 PRO-1 protein 2; AltName: Full=Protein Hs1pro-2 gi|2088653|gb|AAB95285.1| putative nematode-resistance protein [Arabidopsis thaliana] gi|19424041|gb|AAL87262.1| putative nematode-resistance protein [Arabidopsis thaliana] gi|21436061|gb|AAM51231.1| putative nematode-resistance protein [Arabidopsis thaliana] gi|75037108|gb|ABA12453.1| AKINbetagamma-interacting protein 2 [Arabidopsis thaliana] gi|330254667|gb|AEC09761.1| HS1 PRO-1 2-like protein [Arabidopsis thaliana]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 278/465 (59%), Positives = 340/465 (73%), Gaps = 38/465 (8%)

Query: 1   MVDLDCKTKMPS----KSPKLSNKLQVSIPTPFRGA-TKSPVACSDAA-CSAYEQYLRLP 54
           MVD+D K KM S     SPKLS+KL V+IP+PF+     SP++CS  A CSAYE YLRLP
Sbjct: 1   MVDMDWKRKMVSSDLPNSPKLSSKLHVTIPSPFKIVPVSSPISCSAPALCSAYELYLRLP 60

Query: 55  ELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATS 114
           ELRKLWSSRDFP W +E +LKPALQALEI+FR V  V SD RPY N RE+ RRL+SL T 
Sbjct: 61  ELRKLWSSRDFPQWTSEPILKPALQALEISFRLVFAVCSDTRPYINHREWNRRLDSLITK 120

Query: 115 QIQLIASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLP 174
           QIQL+A++CED++  G                   SAE   V GG S+L       SLLP
Sbjct: 121 QIQLVAAICEDEEEEGI------------------SAEA-PVGGGRSSL-------SLLP 154

Query: 175 RLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKN 234
           +LATW++SE    KI+Y I+ EM  C+YTLGLGE N+AGKPNL YDA+C+P+E++SLK N
Sbjct: 155 QLATWRRSEALGKKILYTIDNEMSRCKYTLGLGEQNIAGKPNLRYDAICRPNEIYSLKDN 214

Query: 235 PYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKL 294
           PY   I+NHENQTLY  HQILESWI+ +  LL RIVS IE ++F +ASND YLLE+IWK+
Sbjct: 215 PYADHIDNHENQTLYIIHQILESWIYASGNLLNRIVSSIEEEKFGKASNDVYLLEKIWKI 274

Query: 295 LSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILG 354
           L+EIEDLH+LMDP+DFL+LK QL I S+ ++  FCFRS+GL E+ K SK+L+  VP +L 
Sbjct: 275 LAEIEDLHMLMDPEDFLKLKKQLQIKSTGKNDAFCFRSKGLVEMMKMSKDLRQKVPAVLA 334

Query: 355 VEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGS 414
           VEVDP GGPR+QEAAM++Y  K E D  KIHL+Q +QAVEAA K FF+ Y+QL+A +MGS
Sbjct: 335 VEVDPTGGPRLQEAAMKLYARKTECD--KIHLLQGMQAVEAAAKSFFFGYRQLVAAMMGS 392

Query: 415 LEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSH 459
            E  A      S  S DSLSQ+F+EPTY+PSLDAAKTFLGEFWSH
Sbjct: 393 AEMNATA----SQESCDSLSQIFMEPTYFPSLDAAKTFLGEFWSH 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	465
TAIR|locus:2081988	428	AT3G55840 [Arabidopsis thalian	0.625	0.679	0.591	1.7e-124
TAIR|locus:2061221	435	HSPRO2 "ortholog of sugar beet	0.748	0.8	0.511	4.5e-91

TAIR|locus:2081988 AT3G55840 [Arabidopsis thaliana (taxid:3702)]

 Score = 886 (316.9 bits), Expect = 1.7e-124, Sum P(2) = 1.7e-124
 Identities = 174/294 (59%), Positives = 209/294 (71%)

Query:   165 NRTSEYSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCK 224
             N  S  SLL  +AT + SE    KI+  IE EMR C+YTLGLGEPNLAGKP L+YDAVC 
Sbjct:   136 NGWSSLSLLSEIATCRTSESVGQKILSTIENEMRWCKYTLGLGEPNLAGKPYLQYDAVCL 195

Query:   225 PHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASND 284
             P ELHSLK NPY   I N ENQ LYT+HQILESWI+ +  LL RI SRIE  +FE+AS+D
Sbjct:   196 PEELHSLKNNPYADHIENQENQMLYTSHQILESWIYVSVNLLYRIESRIEEGKFEKASSD 255

Query:   285 CYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKE 344
              YLLERIWKLLSEIEDLH+LMDP+DFL++K QL I S+  +  FCFRS+GL E+ K SKE
Sbjct:   256 VYLLERIWKLLSEIEDLHILMDPEDFLKVKKQLQIKSTFPNDAFCFRSKGLVEMAKMSKE 315

Query:   345 LKHNVPLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHXXXXXXXXXXXXKRFFYAY 404
             L+  VP +L VEVDP GGPR+QEAAM++Y+ K E  + KIH            KRFF+ Y
Sbjct:   316 LRQKVPAVLEVEVDPTGGPRLQEAAMKLYSRKTE--YEKIHLLQGMQAVESAAKRFFFGY 373

Query:   405 KQLLAVVMGSLEAKANGXXXXXXXXXXXXXQLFLEPTYYPSLDAAKTFLGEFWS 458
             ++L+A ++G+ EA AN              Q+F+EP YYPSLDAAKTFLGEFWS
Sbjct:   374 QKLVAAMIGNAEANAN-RTVANHESYDSLTQVFMEPPYYPSLDAAKTFLGEFWS 426

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2061221 HSPRO2 "ortholog of sugar beet HS1 PRO-1 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 184/360 (51%), Positives = 238/360 (66%)

Query:   105 KRRLESLATSQIQLIASLCED-----DDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGG 159
             K  L++L  S  +L+ ++C D     + R     +  L T+   L       E  +    
Sbjct:    81 KPALQALEIS-FRLVFAVCSDTRPYINHREWNRRLDSLITKQIQLVAAICEDEEEEGISA 139

Query:   160 ESTLVNRTSEYSLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEY 219
             E+ +    S  SLLP+LATW++SE    KI+Y I+ EM  C+YTLGLGE N+AGKPNL Y
Sbjct:   140 EAPVGGGRSSLSLLPQLATWRRSEALGKKILYTIDNEMSRCKYTLGLGEQNIAGKPNLRY 199

Query:   220 DAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFE 279
             DA+C+P+E++SLK NPY   I+NHENQTLY  HQILESWI+ +  LL RIVS IE ++F 
Sbjct:   200 DAICRPNEIYSLKDNPYADHIDNHENQTLYIIHQILESWIYASGNLLNRIVSSIEEEKFG 259

Query:   280 EASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEIT 339
             +ASND YLLE+IWK+L+EIEDLH+LMDP+DFL+LK QL I S+ ++  FCFRS+GL E+ 
Sbjct:   260 KASNDVYLLEKIWKILAEIEDLHMLMDPEDFLKLKKQLQIKSTGKNDAFCFRSKGLVEMM 319

Query:   340 KQSKELKHNVPLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHXXXXXXXXXXXXKR 399
             K SK+L+  VP +L VEVDP GGPR+QEAAM++Y  K E D  KIH            K 
Sbjct:   320 KMSKDLRQKVPAVLAVEVDPTGGPRLQEAAMKLYARKTECD--KIHLLQGMQAVEAAAKS 377

Query:   400 FFYAYKQLLAVVMGSLEAKANGXXXXXXXXXXXXXQLFLEPTYYPSLDAAKTFLGEFWSH 459
             FF+ Y+QL+A +MGS E  A               Q+F+EPTY+PSLDAAKTFLGEFWSH
Sbjct:   378 FFFGYRQLVAAMMGSAEMNATASQESCDSLS----QIFMEPTYFPSLDAAKTFLGEFWSH 433

GO:0005739 "mitochondrion" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009646 "response to absence of light" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04203	HSPR2_ARATH	No assigned EC number	0.5978	0.9182	0.9816	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_X0749 hypothetical protein (459 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	465
pfam07014	261	pfam07014, Hs1pro-1_C, Hs1pro-1 protein C-terminus	1e-158
pfam07231	182	pfam07231, Hs1pro-1_N, Hs1pro-1 N-terminus	1e-74

>gnl|CDD|191669 pfam07014, Hs1pro-1_C, Hs1pro-1 protein C-terminus

 Score =  448 bits (1154), Expect = e-158
 Identities = 183/263 (69%), Positives = 220/263 (83%), Gaps = 3/263 (1%)

Query: 197 MRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILE 256
           MR C+YTLGLGEPNLAGKPNL YDAVC+P+ELH+LKK PY   I N ENQTL+T HQILE
Sbjct: 1   MRRCKYTLGLGEPNLAGKPNLRYDAVCRPNELHALKKTPYADHIENKENQTLFTIHQILE 60

Query: 257 SWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQ 316
           SWI+ + +LL RI SRIE ++FE+A++DCY+LERIWKLL+EIEDLHLLMDPDDFL+LK Q
Sbjct: 61  SWIYASSKLLTRISSRIEERKFEKAASDCYILERIWKLLAEIEDLHLLMDPDDFLKLKKQ 120

Query: 317 LSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGPRVQEAAMRMYNEK 376
           L I S+  +  FCFRS+GL E+TK SK+L+H VP +LGVEVDP GGPR+QEAAM++Y  K
Sbjct: 121 LQIKSTPSNAAFCFRSKGLVEVTKMSKDLRHKVPAVLGVEVDPTGGPRIQEAAMKLYRRK 180

Query: 377 KERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLSQL 436
            E  + KIHL+QA+QAVEAA+KRFF+ YKQL+A +MGS EA AN   V S  S DSL+Q+
Sbjct: 181 TE--YEKIHLLQAMQAVEAAVKRFFFGYKQLVAAMMGSAEANAN-RAVFSAESMDSLAQM 237

Query: 437 FLEPTYYPSLDAAKTFLGEFWSH 459
           FLEPTY+PSLDAAKTFLG+FWSH
Sbjct: 238 FLEPTYFPSLDAAKTFLGDFWSH 260

This family represents the C-terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance. Length = 261

>gnl|CDD|191707 pfam07231, Hs1pro-1_N, Hs1pro-1 N-terminus

 Score =  232 bits (592), Expect = 1e-74
 Identities = 114/202 (56%), Positives = 140/202 (69%), Gaps = 28/202 (13%)

Query: 1   MVDLDCKTKM-----PSKSPKLSNKLQVSIPTPFR-GATKSPV-ACSDAACSAYEQYLRL 53
           MVDLD K KM     PSKSPKLS K  VSIP P +  +  SP+ + + A CSAYE YLRL
Sbjct: 1   MVDLDWKRKMVSSDLPSKSPKLSTKDHVSIPLPLKLPSISSPISSAAPALCSAYELYLRL 60

Query: 54  PELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLAT 113
           PELRKLWSS DFP+W+NE +LKPALQALEITFRF+S VLSD RPY NRRE+ RRLESLAT
Sbjct: 61  PELRKLWSSNDFPHWDNEPILKPALQALEITFRFISTVLSDTRPYINRREWNRRLESLAT 120

Query: 114 SQIQLIASLCEDDDRS-GTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSL 172
            QI++IA+LCED++++ GT P   L++ +                    ++    SE SL
Sbjct: 121 DQIEIIAALCEDEEQTRGTVPTAPLSSGD--------------------SVSRSYSELSL 160

Query: 173 LPRLATWQKSEDAADKIMYIIE 194
           LPRLATW+KSED A +I+Y +E
Sbjct: 161 LPRLATWRKSEDIAQRILYTVE 182

This family represents the N-terminus (approximately 180 residues) of plant Hs1pro-1, which is believed to confer resistance to nematodes. Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	465
PF07014	261	Hs1pro-1_C: Hs1pro-1 protein C-terminus; InterPro:	100.0
PF07231	182	Hs1pro-1_N: Hs1pro-1 N-terminus; InterPro: IPR0098	100.0
TIGR03036	264	trp_2_3_diox tryptophan 2,3-dioxygenase. Members o	98.61
PF03301	346	Trp_dioxygenase: Tryptophan 2,3-dioxygenase; Inter	98.15
COG3483	262	TDO2 Tryptophan 2,3-dioxygenase (vermilion) [Amino	86.78

>PF07014 Hs1pro-1_C: Hs1pro-1 protein C-terminus; InterPro: IPR009743 This entry represents the C terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance []

Probab=100.00  E-value=7.8e-150  Score=1057.68  Aligned_cols=261  Identities=68%  Similarity=1.146  Sum_probs=258.4

Q ss_pred             cccccccccCCCCCCCCCcccccccccCccccccccCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012382          197 MRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESK  276 (465)
Q Consensus       197 M~rc~yTLGLGEpNLaGKp~L~YD~vckP~evh~lk~t~~d~~~~n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~  276 (465)
                      |+||+||||||||||||||+|+||+||||+|||+||++|||++|+|+|||||||||||+||||+||++||+||+++|++|
T Consensus         1 M~rc~yTLGLGEpNlaGKP~L~YD~vC~P~eihalk~~p~dd~i~n~En~tL~t~hQIlEsWi~~a~~LL~ri~~~i~~~   80 (261)
T PF07014_consen    1 MMRCPYTLGLGEPNLAGKPVLEYDRVCRPNEIHALKTTPYDDHIGNHENHTLHTTHQILESWIHVARKLLERIEERIEAR   80 (261)
T ss_pred             CCCCcccccCCCcccCCCCccccccccCHHHHHHhccCCcchhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            89999999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCCCCcccccchhhHHhhhhHHhhhhccceeeec
Q 012382          277 QFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVE  356 (465)
Q Consensus       277 ~~e~AA~dc~~vERIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~fCfRSr~L~evtk~ckdLrh~VP~iLgVE  356 (465)
                      +|||||+|||+||||||||++|||||+|||||||||||+||+|++.+++++||||||+||||||||||||||||+|||||
T Consensus        81 ~~ekAa~dc~~vERiWKLL~eieDlhllMDPdDFlrLK~qL~iks~~~~~afCfRS~~Lvevtk~ckdLrhkVP~il~VE  160 (261)
T PF07014_consen   81 DFEKAASDCWIVERIWKLLAEIEDLHLLMDPDDFLRLKKQLAIKSAPETAAFCFRSKELVEVTKMCKDLRHKVPEILGVE  160 (261)
T ss_pred             cHHHHHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccccCCCCcchhhhHHHHHHHHHHHHHHHHhCChheEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCChHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccceeeeecCCcchhhhhh
Q 012382          357 VDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLSQL  436 (465)
Q Consensus       357 vDP~GGPr~QEAaM~lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vmGS~Ea~gn~~~~vs~~~~d~Lsq~  436 (465)
                      ||||||||+||||||||+++++  ++||||||||||||+|||||||+|||||++||||+|||||++++ |+|++|+|+||
T Consensus       161 vDP~GGPriqEAaMkLy~~~~~--~ekihLLQa~QavE~a~krFff~YkQlv~~vMGS~Ea~~~~~~~-~~~~~D~Lsq~  237 (261)
T PF07014_consen  161 VDPKGGPRIQEAAMKLYRRKGE--FEKIHLLQAFQAVEVAVKRFFFAYKQLVVAVMGSSEAKGNRVLF-SIESADSLSQI  237 (261)
T ss_pred             eCCCCCchHHHHHHHHHHHcCC--cceeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcccc-cccccchHHHH
Confidence            9999999999999999988887  89999999999999999999999999999999999999999999 99999999999


Q ss_pred             ccCCCCCCChhhHhhhhhhhhccc
Q 012382          437 FLEPTYYPSLDAAKTFLGEFWSHE  460 (465)
Q Consensus       437 flEP~yFPSLDaAKTFLG~~W~~~  460 (465)
                      ||||||||||||||||||+||+|+
T Consensus       238 flEPtYfPSLDaAKTFLg~~W~~~  261 (261)
T PF07014_consen  238 FLEPTYFPSLDAAKTFLGYYWDND  261 (261)
T ss_pred             hcCCCCCCchhHHHHHHHHhhccC
Confidence            999999999999999999999985

>PF07231 Hs1pro-1_N: Hs1pro-1 N-terminus; InterPro: IPR009869 This entry represents the N terminus (approximately 180 residues) of plant Hs1pro-1, which is believed to confer resistance to nematodes []

Probab=100.00  E-value=1.1e-84  Score=592.69  Aligned_cols=172  Identities=69%  Similarity=1.099  Sum_probs=166.7

Q ss_pred             CcccccccCC-----CCCCCCCCcccccccCC----CccCCCCCcCCCchhhHHHHHhhhcchHHHHhhcCCCCCCCccc
Q 012382            1 MVDLDCKTKM-----PSKSPKLSNKLQVSIPT----PFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNWENE   71 (465)
Q Consensus         1 mvdl~w~~km-----~~kspkls~~~~~~ip~----p~r~~~~~~a~~~~~~c~aYe~YLrLPeLr~LW~s~~fP~W~nE   71 (465)
                      |||||||+||     |+||||||+++|++||+    |++++||++++++.  |+|||+|||||||++||++++||||+||
T Consensus         1 MvDldwk~kM~~sd~~~kspkls~~~~~siP~~~~~~~~s~~is~as~~~--c~AYe~YLrLPeL~~LW~s~~fP~W~nE   78 (182)
T PF07231_consen    1 MVDLDWKAKMVSSDMPNKSPKLSLKLHVSIPSPLQLPSVSNDISVASSSA--CSAYELYLRLPELRRLWRSKDFPNWANE   78 (182)
T ss_pred             CccchhhhcCcCCCCCCCCCccccccccccccccCCCcccCCCCCCChHH--HHHHHHHhcCHHHHHHhcCCCCCCCccc
Confidence            9999999999     89999999999999998    78889999887777  9999999999999999999999999999


Q ss_pred             cchhhhhhhHHHHHHHHHHHhcCCCcccchhHHHHHHHHHhhhhHHHHHHHhccccC-CCCCCcccccccccccccCCCc
Q 012382           72 AVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLIASLCEDDDR-SGTAPIVDLTTENGFLARNRSS  150 (465)
Q Consensus        72 ~i~kPAL~aLEitFR~is~vlsD~RpYinrrEw~RrlESLat~Qielia~lcE~e~~-~G~aP~s~Ls~~~~~~~r~~s~  150 (465)
                      ||||||||||||||||||+||||||||||||||+||||||||+||||||+|||||++ +|+||+++||++          
T Consensus        79 ~ivKPALqaLEitFR~is~vLsDpRPYinrrEw~RRlESLa~~qieiia~lcE~ee~~~g~aP~a~ls~~----------  148 (182)
T PF07231_consen   79 PIVKPALQALEITFRFISTVLSDPRPYINRREWTRRLESLATSQIEIIAALCEDEEETRGTAPTADLSSS----------  148 (182)
T ss_pred             ccchHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccC----------
Confidence            999999999999999999999999999999999999999999999999999999999 999999999986          


Q ss_pred             ccccccCCCCccccccccccccchhhhhhhccHHHHHHHHHHhh
Q 012382          151 AEVWKVPGGESTLVNRTSEYSLLPRLATWQKSEDAADKIMYIIE  194 (465)
Q Consensus       151 ~evw~~p~~~~~~Vs~~Se~SLLprLatW~~s~~va~ki~~~IE  194 (465)
                                +++|+|+|++|||||||||+|||+|||||+|+||
T Consensus       149 ----------~~~v~~~Se~SLLPrLAtW~kse~va~ril~aIE  182 (182)
T PF07231_consen  149 ----------ASVVSRYSEASLLPRLATWQKSEDVAQRILYAIE  182 (182)
T ss_pred             ----------ccceechhhhhhhhhhhhhhhHHHHHHHHHhhcC
Confidence                      3679999999999999999999999999999998

>TIGR03036 trp_2_3_diox tryptophan 2,3-dioxygenase

Probab=98.61  E-value=1.5e-06  Score=85.14  Aligned_cols=223  Identities=19%  Similarity=0.286  Sum_probs=159.0

Q ss_pred             cccccccCccccccccCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHH
Q 012382          217 LEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLS  296 (465)
Q Consensus       217 L~YD~vckP~evh~lk~t~~d~~~~n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~  296 (465)
                      +.|..-.+=.++++|.+...|    +|.-..+-.+||+.|-|......=|+.+.+.+.+++...|.+.---+.||.+.|.
T Consensus         6 ~~Y~~Yl~ld~LLslQ~p~s~----~hDE~lFIv~HQ~~ELwfklil~El~~a~~~l~~~~~~~a~~~L~Rv~~i~~~L~   81 (264)
T TIGR03036         6 MSYGDYLQLDTLLSAQHPLSD----DHDEMLFIVQHQTSELWMKLILHELRAARRAIRADDLPPAFKMLARVSRIQEQLN   81 (264)
T ss_pred             CCHHHHHchHHHHhcCCCCCC----CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence            567666777788898877764    4566677789999999999999999999999999999999877788889999999


Q ss_pred             HHHHhhhcCChhHHHhhhhhhccccCCCCCCccccc---------chhhHHhhhhHHhhh--------------------
Q 012382          297 EIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRS---------RGLFEITKQSKELKH--------------------  347 (465)
Q Consensus       297 eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~fCfRS---------r~L~evtk~ckdLrh--------------------  347 (465)
                      +.-+++-=|.|.||+..+..|+-.|+-.+..  ||-         ...+.+-+.-.+.+.                    
T Consensus        82 ~~~~vL~tMtp~df~~FR~~Lg~aSGfQS~q--yR~iE~~lG~k~~~~l~~~~~~p~~~~~L~~~l~~PSLyd~~l~~L~  159 (264)
T TIGR03036        82 QAWDVLATMTPAEYSEFRDALGQSSGFQSYQ--YREIEFLLGNKNAAMLRPHEHDPELHAELEAALHAPSLYDEALRLLA  159 (264)
T ss_pred             HHHHHHcCCCHHHHHHHHHHhCCcchhhhHH--HHHHHHHhCCCcHHHhccccCChHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            9999999999999999999998777654322  221         111111111111111                    


Q ss_pred             ----hcc-ceee--ecccCCCChHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccc
Q 012382          348 ----NVP-LILG--VEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKAN  420 (465)
Q Consensus       348 ----~VP-~iLg--VEvDP~GGPr~QEAaM~lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vmGS~Ea~gn  420 (465)
                          .|| ++|+  +...-..-|.+.+|--.+|..... ..+--.|+++|--|+..+.++=|+|-++|-=|||+-.  ||
T Consensus       160 r~G~~vp~~~l~rd~~~~~~~~~~v~~~w~~vY~~~~~-~~~ly~L~E~L~dide~f~~WR~rH~~~VeR~IG~K~--GT  236 (264)
T TIGR03036       160 RRGFPIPAEVLERDWTQPYEPNPEVEAAWLEVYRDPDR-YWELYELAEKLVDLEDLFRQWRFRHLTTVERIIGFKR--GT  236 (264)
T ss_pred             HcCCCCcHHHHhccccccccccHHHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC
Confidence                122 0111  001123456677777788888765 2244578999999999999999999999999999732  33


Q ss_pred             eeeeecCCcchhhhhhccCCCCCCChhhHhhhh
Q 012382          421 GVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFL  453 (465)
Q Consensus       421 ~~~~vs~~~~d~Lsq~flEP~yFPSLDaAKTFL  453 (465)
                      .-    +.|.+-|.. =++=++||-|=.++|.|
T Consensus       237 GG----SsG~~yLr~-~l~~~~FPeLw~~rt~l  264 (264)
T TIGR03036       237 GG----SSGVAYLKK-MLDVVLFPELWTVRTEL  264 (264)
T ss_pred             CC----CccHHHHHH-hccCccCHHHHhhhccC
Confidence            21    224466666 35788999998887754

Members of this family are tryptophan 2,3-dioxygenase, as confirmed by several experimental characterizations, and by conserved operon structure for many of the other members. This enzyme represents the first of a two-step degradation to L-kynurenine, and a three-step pathway (via kynurenine) to anthranilate plus alanine.

>PF03301 Trp_dioxygenase: Tryptophan 2,3-dioxygenase; InterPro: IPR004981 This is a family of tryptophan 2,3-dioxygenase (1

Probab=98.15  E-value=5e-05  Score=76.98  Aligned_cols=231  Identities=23%  Similarity=0.334  Sum_probs=144.5

Q ss_pred             ccccccccCccccccccCCCCcc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh-----hhHHHHH
Q 012382          216 NLEYDAVCKPHELHSLKKNPYDH-QINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEAS-----NDCYLLE  289 (465)
Q Consensus       216 ~L~YD~vckP~evh~lk~t~~d~-~~~n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA-----~dc~~vE  289 (465)
                      -+.|..-.+=.+|++|-+...+. .-..|.-+.+-.+||+.|-|.....-=|+.+.+.+.+++...|.     +..--+-
T Consensus        14 ~~~Y~dYl~ld~LLslQ~~~s~~~~~~~hDE~lFIv~HQ~~ELwfKlil~EL~~a~~~l~~~~~~~a~~~~~~~~L~Rv~   93 (346)
T PF03301_consen   14 GLTYGDYLQLDTLLSLQKPRSDDGGPPAHDEMLFIVVHQVYELWFKLILHELDSAREALRADDVDEAFMLKVVKRLRRVV   93 (346)
T ss_dssp             STSHHHHTTHHHHTT----SSS---S--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            37777777888888887766641 12355666788999999999999999999999999999999888     8888888


Q ss_pred             HHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCCCCc-----------------------------------ccccch
Q 012382          290 RIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPF-----------------------------------CFRSRG  334 (465)
Q Consensus       290 RIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~f-----------------------------------CfRSr~  334 (465)
                      ||.++|.+.-+++--|.|.||+..+.-|+-.|+-.+..|                                   ..+...
T Consensus        94 ~i~~~l~~~~~vL~TMTp~dF~~FR~~Lg~aSGfQS~qyR~iE~~lG~k~~~ri~~~~~y~~~~~~~~~~~l~~~~~~~s  173 (346)
T PF03301_consen   94 RILELLVQQFDVLETMTPEDFLEFRDYLGPASGFQSAQYRLIEFLLGNKDERRIKYNQQYKEAFNDEDRERLLRSHREPS  173 (346)
T ss_dssp             HHHHHHHHTHHHHTT--HHHHCCCGGGCTT--GGG-HHHHHHHHHCT---GG-------------------GGGGGTT-H
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHHhCCCCCcccHHHHHHHHHHcCCCcccccchhccchhhhhHHHHHHHhhhcCCC
Confidence            999999999999999999999999999886665421110                                   011111


Q ss_pred             hhH--------------------------HhhhhHHhhhhc----cce-eeecc--cCCCChHHHHHHHH----------
Q 012382          335 LFE--------------------------ITKQSKELKHNV----PLI-LGVEV--DPRGGPRVQEAAMR----------  371 (465)
Q Consensus       335 L~e--------------------------vtk~ckdLrh~V----P~i-LgVEv--DP~GGPr~QEAaM~----------  371 (465)
                      +++                          |.++..++.++.    |.- +.-.+  +-...+.+-+|...          
T Consensus       174 ~~~~~~~wLertPgle~~~f~fw~~~~~sv~d~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~v~~a~fd~~~~~~~~~~  253 (346)
T PF03301_consen  174 LLHLVLRWLERTPGLEEDGFNFWQKYKKSVYDMLLRLLARAGFPVPEEELERDLSAEYEKNKEVFDAWFDEEKHEALLAR  253 (346)
T ss_dssp             HHHHHHHHHHHS-----------------HHHHHHHHHHHTT----HHHHSS-TTS-----HHHHHHHHH----------
T ss_pred             HHHHHHHHHHhCccccccccchhhhhHHHHHHHHHHHHHHhcccCcHHHHHHHHHhhcccCHHHHHHHHHhccccccccc
Confidence            111                          111222222211    110 00000  11222223333333          


Q ss_pred             -----------------HhhhccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccceeeeecCCcchhhh
Q 012382          372 -----------------MYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLS  434 (465)
Q Consensus       372 -----------------lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vmGS~Ea~gn~~~~vs~~~~d~Ls  434 (465)
                                       +|..... ...--.|+.++--|+-++.+|=|.|-.+|-=|||+.-  ||.-.    .+.+-|.
T Consensus       254 g~rr~s~~A~~~a~~i~~Yr~~~~-~~~~~~l~e~L~d~de~~~~WR~~H~~~v~R~iG~k~--GTGGs----sG~~yL~  326 (346)
T PF03301_consen  254 GERRLSHKALQGALFIEVYRDEPR-FWDLYQLAEALVDIDELFQRWRYRHVKMVERMIGSKP--GTGGS----SGVDYLR  326 (346)
T ss_dssp             ----------------HHHHTCCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS---STTSS----SCHHHHH
T ss_pred             ccccccccccccccccCCCCCCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCC----ChHHHHH
Confidence                             6666544 2244678999999999999999999999999999933  33221    2446677


Q ss_pred             h-hccCCCCCCChhhHhhhh
Q 012382          435 Q-LFLEPTYYPSLDAAKTFL  453 (465)
Q Consensus       435 q-~flEP~yFPSLDaAKTFL  453 (465)
                      + +-++-.+||-|=.++|||
T Consensus       327 ~t~~~~~~~FpeLw~~rt~l  346 (346)
T PF03301_consen  327 RTVSLRYRFFPELWNLRTFL  346 (346)
T ss_dssp             H--HHC--SSHHHHHHHHT-
T ss_pred             HhhccccCcCHHHHhhhcCC
Confidence            7 567778999999999997

13.11.11 from EC) enzymes involved in tryptophan metabolism, which catalyse the reaction: L-Tryptophan + O(2) = L-Formylkynurenine ; GO: 0004833 tryptophan 2,3-dioxygenase activity, 0005506 iron ion binding, 0016491 oxidoreductase activity, 0019441 tryptophan catabolic process to kynurenine, 0055114 oxidation-reduction process; PDB: 2NW9_A 2NW7_C 1YW0_C 3BK9_C 3E08_B 2NW8_A 2NOX_A.

>COG3483 TDO2 Tryptophan 2,3-dioxygenase (vermilion) [Amino acid transport and metabolism]

Probab=86.78  E-value=16  Score=36.82  Aligned_cols=196  Identities=19%  Similarity=0.288  Sum_probs=134.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCC
Q 012382          246 QTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSES  325 (465)
Q Consensus       246 ~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~  325 (465)
                      .-+-.+||.-|-|......=|+-..+.|.+|+.+-|-+--.-|.||..-|...=|++--|.|-||+..+.-|+-+|+.. 
T Consensus        29 ~LFIv~Hqt~ElW~klilhEl~aA~~llr~~~~~pa~kmL~Rv~ri~eql~~aw~Vl~TMTp~dyl~fR~~lgqsSGFQ-  107 (262)
T COG3483          29 MLFIVQHQTSELWMKLILHELRAARDLLRADDLPPALKMLARVSRIFEQLNQAWDVLATMTPADYLDFRDALGQSSGFQ-  107 (262)
T ss_pred             ceeeehhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcccccch-
Confidence            3355789999999999999999999999999999999999999999999999999999999999999999998877543 


Q ss_pred             CCcccccc---------hhhHHhhhhHH------------------hhhhccceeeecc-----cC----CCChHHHHHH
Q 012382          326 GPFCFRSR---------GLFEITKQSKE------------------LKHNVPLILGVEV-----DP----RGGPRVQEAA  369 (465)
Q Consensus       326 ~~fCfRSr---------~L~evtk~ckd------------------Lrh~VP~iLgVEv-----DP----~GGPr~QEAa  369 (465)
                       ++-||--         .|..+-|---|                  +|...---+.|..     |+    +--+-+-.|=
T Consensus       108 -S~qyR~iEfllGnkn~all~pH~hR~e~~~~L~aal~~pslydeairllar~g~~v~ae~~~rD~~~~~~~~e~V~aAw  186 (262)
T COG3483         108 -SYQYREIEFLLGNKNAALLKPHKHRAELLARLKAALETPSLYDEAIRLLARQGLDVGAEALERDWSATYTTNEAVEAAW  186 (262)
T ss_pred             -HHHHHHHHHHHcCcchhhhCccccCHHHHHHHHHHhcCCccHHHHHHHHHhcCCCCcHHHHhcccccccccCHHHHHHH
Confidence             2222211         11111010011                  1111111111111     22    2223444555


Q ss_pred             HHHhhhccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccceeeeecCCcchhhhhhccCCCCCCChhhH
Q 012382          370 MRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAA  449 (465)
Q Consensus       370 M~lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vmGS~Ea~gn~~~~vs~~~~d~Lsq~flEP~yFPSLDaA  449 (465)
                      .++|..+.. .-+--.|..-+=-+|-++++.=|.|---|--+||----.|.      .++.+-|.+ -|+--.||.|=.-
T Consensus       187 ~evYrdp~~-yW~lyeLaEklvdled~fr~WRfrHvttVERiIG~k~GTGG------TsGv~YL~~-~L~~~lFpeLW~v  258 (262)
T COG3483         187 LEVYRDPQR-YWELYELAEKLVDLEDSFRRWRFRHVTTVERIIGFKRGTGG------TSGVGYLRS-MLDVVLFPELWTV  258 (262)
T ss_pred             HHHHhCHHH-HhHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHhcCCCCCCC------cchHHHHHH-HhHHhhhHHHHHH
Confidence            677887664 22335677778889999999999998888889987433332      235577888 6788888877555


Q ss_pred             hh
Q 012382          450 KT  451 (465)
Q Consensus       450 KT  451 (465)
                      +|
T Consensus       259 Rt  260 (262)
T COG3483         259 RT  260 (262)
T ss_pred             hc
Confidence            54

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	465
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2nw8_A	306	Tryptophan 2,3-dioxygenase; all alpha-helical prot	5e-05
2nox_A	281	Tryptophan 2,3-dioxygenase; helical bundle, heme p	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 2e-11
 Identities = 82/522 (15%), Positives = 145/522 (27%), Gaps = 158/522 (30%)

Query: 11  PSKSPKLSNKLQVSIPTPF------RGATKSPVACSDAACSAYEQYLRLPELRKLW---S 61
                KL   L    P          G+ K+ VA     C +Y+   ++   +  W    
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD--VCLSYKVQCKMD-FKIFWLNLK 190

Query: 62  SRDFPNWENEAVLKPALQAL--EITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLI 119
           + + P    E VL+  LQ L  +I   + S               +  L  L  S+    
Sbjct: 191 NCNSP----ETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 120 ASLCEDDDRSGTAPIVD---------LTTENGFLARNRSSAEVWKVPGGESTLVNRTSEY 170
             L   + ++  A   +         LTT      R +   +              T+  
Sbjct: 246 CLLVLLNVQN--AKAWNAFNLSCKILLTT------RFKQVTDFLSA--------ATTTHI 289

Query: 171 SLLPRLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDA----VCKPH 226
           SL     T    E                      L    L    +         V   +
Sbjct: 290 SLDHHSMTLTPDE-------------------VKSL----LLKYLDCRPQDLPREVLTTN 326

Query: 227 ELH------SLKKNP-----YDHQINNHENQTLYTAHQILESWIFTTQQLLKRIV----- 270
                    S++        + H   +     + ++  +LE   +  +++  R+      
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--RKMFDRLSVFPPS 384

Query: 271 SRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCF 330
           + I +           LL  IW  + +        D    +   N+L             
Sbjct: 385 AHIPTI----------LLSLIWFDVIKS-------DVMVVV---NKL------------- 411

Query: 331 RSRGLFEITKQSKELKHNVP-LILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKI----- 384
               L E  KQ KE   ++P + L ++V       +  + +  YN  K  D   +     
Sbjct: 412 HKYSLVE--KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 385 ----------HLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAK---ANGVVVVSGASSD 431
                     HL          L R  +       +    LE K    +     SG+  +
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVF-------LDFRFLEQKIRHDSTAWNASGSILN 522

Query: 432 SLSQLFL--------EPTYYPSLDAAKTFLGEFWSHEIEKKH 465
           +L QL          +P Y   ++A   FL +   + I  K+
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 54/369 (14%), Positives = 105/369 (28%), Gaps = 112/369 (30%)

Query: 3   DLDCKTKMPSKSPKLSNKLQVSIPTPFRGATKSPVACSDAACSAYEQYL-----RLPE-- 55
           +L CK  + ++  ++++ L  +  T       S     D   S   +YL      LP   
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 56  -------LRKLWSS-RDFPN-WENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKR 106
                  L  +  S RD    W+N          L       S+ + +P       E+++
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIE-SSLNVLEP------AEYRK 373

Query: 107 RLESLA---------------------TSQIQLIA------SLCEDDDRSGTAPIVDLTT 139
             + L+                      S + ++       SL E   +  T  I  +  
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 140 ENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLPRLATWQKSEDAADK-----IMY-II 193
           E     +  +   +        ++V+    Y++     +        D+     I + + 
Sbjct: 434 E--LKVKLENEYAL------HRSIVDH---YNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 194 ECEMRGCRYTLGLGEPN-------LAGKPNLEYDAVCKP----HELHSLKKNPYDHQINN 242
             E    R TL             L  K   +  A        + L  LK   Y   I +
Sbjct: 483 NIEHPE-RMTL---FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF--YKPYICD 536

Query: 243 HENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLH 302
           ++        +++ +        +   + +IE       S    LL              
Sbjct: 537 NDP----KYERLVNA--------ILDFLPKIEENLIC--SKYTDLLRIA----------- 571

Query: 303 LLMDPDDFL 311
            LM  D+ +
Sbjct: 572 -LMAEDEAI 579

>2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; HET: TRP HEM; 1.60A {Xanthomonas campestris PV} SCOP: a.266.1.1 PDB: 2nw7_A* 2nw9_A* 3bk9_A* 3e08_A* 1yw0_A Length = 306

 Score = 44.2 bits (103), Expect = 5e-05
 Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 34/279 (12%)

Query: 209 PNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKR 268
            +   +  L Y    +  +L S ++   +    +H+       HQ  E W+      L+ 
Sbjct: 14  IHTDLEGRLTYGGYLRLDQLLSAQQPLSEP--AHHDEMLFIIQHQTSELWLKLLAHELRA 71

Query: 269 IVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPF 328
            +  ++  +  +        +++ + L+E   +   + P +++  ++ L  SS  +S  +
Sbjct: 72  AIVHLQRDEVWQCRKVLARSKQVLRQLTEQWSVLETLTPSEYMGFRDVLGPSSGFQSLQY 131

Query: 329 CFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGPRVQEAAMRMY--------NEKKERD 380
            +    L     Q  ++    P       +    P + E  +R           + + RD
Sbjct: 132 RYIEFLLGNKNPQMLQVFAYDPAGQARLREVLEAPSLYEEFLRYLARFGHAIPQQYQARD 191

Query: 381 FAKIHLVQALQAVEAALKRFFY---AYKQLLAVVMGSLEAKAN----------------G 421
           +   H   A   +    +R +     Y +  ++    ++ +                  G
Sbjct: 192 WTAAH--VADDTLRPVFERIYENTDRYWREYSLCEDLVDVETQFQLWRFRHMRTVMRVIG 249

Query: 422 VVVVSGASS--DSLSQLFLEPTYYPSLDAAKTFLGEFWS 458
               +G SS    L Q  L  T++P L   +T +G    
Sbjct: 250 FKRGTGGSSGVGFLQQ-ALALTFFPELFDVRTSVGVDNR 287

>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein, oxidoreductase; HET: HEM; 2.40A {Cupriavidus metallidurans} Length = 281

 Score = 43.4 bits (101), Expect = 8e-05
 Identities = 29/204 (14%), Positives = 57/204 (27%), Gaps = 13/204 (6%)

Query: 209 PNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKR 268
             +    ++ Y       ++ S +          H        HQ  E W+      L+ 
Sbjct: 15  AQMDFARDMSYGDYLGLDQILSAQHPLSPD----HNEMLFIVQHQTTELWMKLMLHELRA 70

Query: 269 IVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPF 328
               ++S Q + A      + RI   L +  ++   M P ++  ++  L  SS  +S  +
Sbjct: 71  ARDGVKSDQLQPAFKMLARVSRIMDQLVQAWNVLATMTPPEYSAMRPYLGASSGFQS--Y 128

Query: 329 CFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQ 388
            +R        K +  L+ +          P     V+ A        +          Q
Sbjct: 129 QYREIEFILGNKNAAMLRPH-------AHRPEHLELVETALHTPSMYDEAIRLMARRGFQ 181

Query: 389 ALQAVEAALKRFFYAYKQLLAVVM 412
               V          Y   +    
Sbjct: 182 IDPEVVERDWTQPTQYNASVEAAW 205

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	465
2nw8_A	306	Tryptophan 2,3-dioxygenase; all alpha-helical prot	100.0
2nox_A	281	Tryptophan 2,3-dioxygenase; helical bundle, heme p	98.95
2d0t_A	406	Indoleamine 2,3-dioxygenase; helix bundle, riken s	98.07

>2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; HET: TRP HEM; 1.60A {Xanthomonas campestris PV} SCOP: a.266.1.1 PDB: 2nw7_A* 2nw9_A* 3bk9_A* 3e08_A* 1yw0_A

Probab=100.00  E-value=6.5e-34  Score=275.46  Aligned_cols=232  Identities=15%  Similarity=0.180  Sum_probs=198.2

Q ss_pred             CCCCCCCCCcccccccccCccccccccCCCCcccccCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhh
Q 012382          206 LGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLY-TAHQILESWIFTTQQLLKRIVSRIESKQFEEASND  284 (465)
Q Consensus       206 LGEpNLaGKp~L~YD~vckP~evh~lk~t~~d~~~~n~En~tl~-t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~d  284 (465)
                      =|+||+++++.+.|+..|++.+|++|.+.+++.   .+.|+.|+ ++|||.|.|...+..-|+++.+++.++++..|.+.
T Consensus        11 ~~~~~l~~~~~l~Y~dYl~ld~LLslQ~p~s~~---~~hDE~lFIi~HQ~~ELWfKlil~EL~~a~~~l~~~~l~~a~~~   87 (306)
T 2nw8_A           11 EPGIHTDLEGRLTYGGYLRLDQLLSAQQPLSEP---AHHDEMLFIIQHQTSELWLKLLAHELRAAIVHLQRDEVWQCRKV   87 (306)
T ss_dssp             --------CCTTSHHHHTTHHHHTTCCCCCCSS---CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCcCCCCCCCHHHHhhHHHHHhcCCCCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            379999999999999999999999998877764   25677777 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCCCCcccccchhhHHhhhhHHhh--hh-----ccceeeecc
Q 012382          285 CYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELK--HN-----VPLILGVEV  357 (465)
Q Consensus       285 c~~vERIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~fCfRSr~L~evtk~ckdLr--h~-----VP~iLgVEv  357 (465)
                      |.-|.||||+|.+..|++--|+|+||++++..|+..|+.       -|-+.++|..+|.+..  ++     +|++.+...
T Consensus        88 L~Rv~ri~~~L~~~~~vL~tMtP~dF~~FR~~Lg~aSGF-------QS~qyR~iE~~lG~k~~~~l~~~~~~p~~~~~l~  160 (306)
T 2nw8_A           88 LARSKQVLRQLTEQWSVLETLTPSEYMGFRDVLGPSSGF-------QSLQYRYIEFLLGNKNPQMLQVFAYDPAGQARLR  160 (306)
T ss_dssp             HHHHHHHHHHHHHTHHHHTTCCHHHHTTTGGGSCSCCGG-------GCHHHHHHHHHHTCCCGGGGSTTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccc-------ccHHHHHHHHHhCCCcHhhhcccccCHHHHHHHH
Confidence            999999999999999999999999999999999987754       4555577777777666  44     888888877


Q ss_pred             cCCCC----------------------------------hHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHh
Q 012382          358 DPRGG----------------------------------PRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYA  403 (465)
Q Consensus       358 DP~GG----------------------------------Pr~QEAaM~lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~  403 (465)
                      ++.+|                                  |++|+|.|++|..+.+ ..+..+|+++|++||.++++|.|+
T Consensus       161 ~~~~~pSL~d~~~~~L~r~G~~~~~~~l~rd~~~~y~~~~~v~~~~~~vY~~~~~-~~~~~~L~eaL~did~~~~~WR~~  239 (306)
T 2nw8_A          161 EVLEAPSLYEEFLRYLARFGHAIPQQYQARDWTAAHVADDTLRPVFERIYENTDR-YWREYSLCEDLVDVETQFQLWRFR  239 (306)
T ss_dssp             HHHTSCCHHHHHHHHHHHTTCCCCGGGGSCCTTSCCCCCGGGHHHHHHHHHCTTT-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHcCCCcchhhhhhhhhhccCCCHHHHHHHHHHhcCCcc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence            77777                                  6778888999988765 467899999999999999999999


Q ss_pred             HHHHHHHhhcccccccceeeeecCCcchhhhhhccCCCCCCChhhHhhhhhh
Q 012382          404 YKQLLAVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGE  455 (465)
Q Consensus       404 YkQlv~~vmGS~Ea~gn~~~~vs~~~~d~Lsq~flEP~yFPSLDaAKTFLG~  455 (465)
                      |.++|.-|||+....|.      +++.+-|.+++ +++|||+|..+|||||+
T Consensus       240 H~~~v~R~IG~k~GTGG------SsG~~yL~~~~-~~~~FPeLw~~rt~L~~  284 (306)
T 2nw8_A          240 HMRTVMRVIGFKRGTGG------SSGVGFLQQAL-ALTFFPELFDVRTSVGV  284 (306)
T ss_dssp             HHHHHHHHHTTCCCSSS------SCTHHHHHHHT-TCCSCHHHHHGGGTTTC
T ss_pred             HHHHHHHHhCCCCCCCC------cchHHHHHHhc-CCCcCHHHHHHHhhccc
Confidence            99999999999765443      44679999986 89999999999999998

>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein, oxidoreductase; HET: HEM; 2.40A {Cupriavidus metallidurans}

Probab=98.95  E-value=2.2e-08  Score=96.61  Aligned_cols=232  Identities=16%  Similarity=0.249  Sum_probs=164.5

Q ss_pred             CCCCCCCcccccccccCccccccccCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHH
Q 012382          208 EPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYL  287 (465)
Q Consensus       208 EpNLaGKp~L~YD~vckP~evh~lk~t~~d~~~~n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~  287 (465)
                      +|.+...+.+.|..-.+-.+|++|-+...+    .|.-+.+-.+||+.|-|.....-=|+.+.+.+.+++...|.+.=--
T Consensus        14 ~~~~~~~~~~~Y~dYl~ld~LLslQ~p~s~----~hDE~lFIv~HQ~~ELwfKlil~El~~a~~~l~~~~~~~a~~~L~R   89 (281)
T 2nox_A           14 GAQMDFARDMSYGDYLGLDQILSAQHPLSP----DHNEMLFIVQHQTTELWMKLMLHELRAARDGVKSDQLQPAFKMLAR   89 (281)
T ss_dssp             -------CCCCHHHHHTHHHHTTCCCCCSS----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHhHHHHHhcCCCCCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            788888999999999999999999776663    3555667789999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCCCCccccc---------chhhHHhh----hhHHhhh--hccce
Q 012382          288 LERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRS---------RGLFEITK----QSKELKH--NVPLI  352 (465)
Q Consensus       288 vERIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~fCfRS---------r~L~evtk----~ckdLrh--~VP~i  352 (465)
                      |-||.+.|.+.-|++-=|+|.||+..+.-|+-.|+..+..  ||-         ..++.+-+    .-+.|+.  .-|.+
T Consensus        90 v~~i~~~L~~~~~vL~tMtp~dF~~FR~~Lg~aSGFQS~q--yR~iE~~lG~k~~~~l~~~~~~p~~~~~l~~~~~~pSL  167 (281)
T 2nox_A           90 VSRIMDQLVQAWNVLATMTPPEYSAMRPYLGASSGFQSYQ--YREIEFILGNKNAAMLRPHAHRPEHLELVETALHTPSM  167 (281)
T ss_dssp             HHHHHHHHHHTHHHHTTCCHHHHHHHGGGTTTCCGGGCHH--HHHHHHHTTCCCGGGGGGGTTCHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcchhhHHH--HHHHHHHhCCCcHHHhcccccCHHHHHHHHHHhcCCCH
Confidence            8999999999999999999999999999999666553222  221         00111000    0000000  00111


Q ss_pred             e----------eecc-----------cCCCChHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 012382          353 L----------GVEV-----------DPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVV  411 (465)
Q Consensus       353 L----------gVEv-----------DP~GGPr~QEAaM~lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~v  411 (465)
                      .          |..+           -=...|.++++-.++|..+.. ..+--.|+.+|-.++.++.++=|+|-..|.-|
T Consensus       168 ~d~~~~~L~r~G~~~~~~~l~rd~~~~y~~~~~v~~~~~~vy~~~~~-~~~~~~L~e~L~d~d~~~~~WR~~H~~~v~R~  246 (281)
T 2nox_A          168 YDEAIRLMARRGFQIDPEVVERDWTQPTQYNASVEAAWLEVYRNPSA-HWELYELGEKFVDLEDAFRQWRFRHVTTVERV  246 (281)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHSCCTTSCCCCCHHHHHHHHHHHHSGGG-GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCchhhhhhhhhhccCccHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0          1111           113445677777778877654 33456789999999999999999999999999


Q ss_pred             hcccccccceeeeecCCcchhhhhhccCCCCCCChhhHhhhh
Q 012382          412 MGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFL  453 (465)
Q Consensus       412 mGS~Ea~gn~~~~vs~~~~d~Lsq~flEP~yFPSLDaAKTFL  453 (465)
                      ||+.  .||.-    +++.+=|... ++-++||.|=.++|+|
T Consensus       247 IG~k--~GTGG----SsG~~yL~~~-~~~~~FPeLw~~rt~l  281 (281)
T 2nox_A          247 IGFK--RGTGG----TEGVSYLRRM-LDVVLFPELWKLRTDL  281 (281)
T ss_dssp             HTTC--CCTTS----SCTHHHHHHH-TTCCSSHHHHHHHHHC
T ss_pred             hCCC--CCCCC----CchHHHHHHh-ccCCcCHHHHHHhccC
Confidence            9984  35422    2255778886 4678999999999986

>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} SCOP: a.266.1.2 PDB: 2d0u_A*

Probab=98.07  E-value=9.8e-05  Score=73.94  Aligned_cols=161  Identities=15%  Similarity=0.156  Sum_probs=113.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHH-hhhcCChhHH-Hhhhhhhcc
Q 012382          242 NHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIED-LHLLMDPDDF-LRLKNQLSI  319 (465)
Q Consensus       242 n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~eieD-Lhl~MDPdDF-LrLK~qL~i  319 (465)
                      .+...-++.+||-+|.|.-.+-..+..+.++++.++.+.+.+-..-+-++.+-|.++.+ ++--|||.+| .+++--|+.
T Consensus       160 ~~dE~~Filv~~~~El~~~~~l~~~~~A~~a~~~~d~~~~~~~L~ri~~~l~~l~~~l~~m~e~~~P~~fy~~iRp~L~g  239 (406)
T 2d0t_A          160 GDCSKGFFLVSLLVEIAAASAIKVIPTVFKAMQMQERDTLLKALLEIASCLEKALQVFHQIHDHVNPKAFFSVLRIYLSG  239 (406)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCHHHHHHTHHHHTCC
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhccccccc
Confidence            34445577999999999999999999999999999999888888888888887777776 4888999999 999999985


Q ss_pred             ccCC------------CCCCccc------ccchhhHHhhhhHHhhhhccceeeecccCCCChH-HHHHHHHHh-------
Q 012382          320 SSSS------------ESGPFCF------RSRGLFEITKQSKELKHNVPLILGVEVDPRGGPR-VQEAAMRMY-------  373 (465)
Q Consensus       320 ~s~~------------~~~~fCf------RSr~L~evtk~ckdLrh~VP~iLgVEvDP~GGPr-~QEAaM~lY-------  373 (465)
                      ....            +..+.-|      =|.. +          |..=.+|||+--++||.. ---+-|+-|       
T Consensus       240 ~~~~~~~p~G~~yeGv~~~p~~~~G~Sg~QSsl-~----------~~lD~~LGi~~~~~~~~~~~fl~~mr~ymP~~hr~  308 (406)
T 2d0t_A          240 WKGNPQLSDGLVYEGFWEDPKEFAGGSAGQSSV-F----------QCFDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRN  308 (406)
T ss_dssp             BSSCGGGTTCBEETTTCSSCBCBCCCCGGGCHH-H----------HHHHHHTTCCSSCSSSHHHHHHHHHGGGSCHHHHH
T ss_pred             cccccCCCCCeeeeccCCcccccCCCchhhhhH-H----------HHHHHHhCCCCccccCChHHHHHHHHhhCCchHHH
Confidence            3311            0011111      2211 1          112346888877777732 001123333       


Q ss_pred             -----hhccc-----cCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 012382          374 -----NEKKE-----RDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMG  413 (465)
Q Consensus       374 -----~~~~~-----~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vmG  413 (465)
                           .....     ...+...|..|+.+++.++++|=+.|-|+|.-.||
T Consensus       309 fL~~l~~~~~vr~~v~~~~~~~L~ea~~~~~~~l~~fR~~Hi~~V~ryI~  358 (406)
T 2d0t_A          309 FLCSLESNPSVREFVLSKGDAGLREAYDACVKALVSLRSYHLQIVTKYIL  358 (406)
T ss_dssp             HHHHHHTSCCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHhcCCccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 11100     00123478999999999999999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	465
d2nw8a1	262	a.266.1.1 (A:23-284) Tryptophan 2,3-dioxygenase {X	0.001

>d2nw8a1 a.266.1.1 (A:23-284) Tryptophan 2,3-dioxygenase {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 262

class: All alpha proteins
fold: Indolic compounds 2,3-dioxygenase-like
superfamily: Indolic compounds 2,3-dioxygenase-like
family: Bacterial tryptophan 2,3-dioxygenase
domain: Tryptophan 2,3-dioxygenase
species: Xanthomonas campestris pv. campestris [TaxId: 340]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 44/268 (16%), Positives = 87/268 (32%), Gaps = 56/268 (20%)

Query: 227 ELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCY 286
           +L S ++ P     ++ E       HQ  E W+   + L   + + I   Q +E      
Sbjct: 10  QLLSAQQ-PLSEPAHHDE-MLFIIQHQTSELWL---KLLAHELRAAIVHLQRDEVWQCRK 64

Query: 287 LLERI---WKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRS----------- 332
           +L R     + L+E   +   + P +++  ++ L  SS  +S    +R            
Sbjct: 65  VLARSKQVLRQLTEQWSVLETLTPSEYMGFRDVLGPSSGFQS--LQYRYIEFLLGNKNPQ 122

Query: 333 -----RGLFEITKQSKELKHNVPLILGVEVDPRG---------------GPRVQEAAMRM 372
                        + +E+     L                            V +  +R 
Sbjct: 123 MLQVFAYDPAGQARLREVLEAPSLYEEFLRYLARFGHAIPQQYQARDWTAAHVADDTLRP 182

Query: 373 YNEKKERDFAKIH----LVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGA 428
             E+   +  +      L + L  VE   + + + + + +  V+G            +G 
Sbjct: 183 VFERIYENTDRYWREYSLCEDLVDVETQFQLWRFRHMRTVMRVIGFKRG--------TGG 234

Query: 429 SS--DSLSQLFLEPTYYPSLDAAKTFLG 454
           SS    L Q  L  T++P L   +T +G
Sbjct: 235 SSGVGFLQQA-LALTFFPELFDVRTSVG 261

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	465
d2nw8a1	262	Tryptophan 2,3-dioxygenase {Xanthomonas campestris	99.57

>d2nw8a1 a.266.1.1 (A:23-284) Tryptophan 2,3-dioxygenase {Xanthomonas campestris pv. campestris [TaxId: 340]}

class: All alpha proteins
fold: Indolic compounds 2,3-dioxygenase-like
superfamily: Indolic compounds 2,3-dioxygenase-like
family: Bacterial tryptophan 2,3-dioxygenase
domain: Tryptophan 2,3-dioxygenase
species: Xanthomonas campestris pv. campestris [TaxId: 340]

Probab=99.57  E-value=1.2e-14  Score=131.85  Aligned_cols=218  Identities=17%  Similarity=0.201  Sum_probs=152.7

Q ss_pred             cccccccCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHhhhcC
Q 012382          226 HELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLM  305 (465)
Q Consensus       226 ~evh~lk~t~~d~~~~n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~eieDLhl~M  305 (465)
                      .++.+|.+..++. ..|-|..++ .+|||.|-|...+..-|+.|.+.++.++...|....--+-||+|+|.+.-|+.-=|
T Consensus         9 d~LL~lQ~p~t~~-~~~DE~~FI-vvHQ~~EL~fk~il~el~~~~~~~~~~~~~~a~~~l~R~~~~~~~l~~~~~vletM   86 (262)
T d2nw8a1           9 DQLLSAQQPLSEP-AHHDEMLFI-IQHQTSELWLKLLAHELRAAIVHLQRDEVWQCRKVLARSKQVLRQLTEQWSVLETL   86 (262)
T ss_dssp             HHHTTCCCCCCSS-CCTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTHHHHTTC
T ss_pred             HHHHhCCCCCCCC-CCCCcceeh-HHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3556664433321 235555555 99999999999999999999999999999999888888899999999999999999


Q ss_pred             ChhHHHhhhhhhccccCCCCCCcccccchhhHHhhhhHHhhhhcc--ceeeecccCCCChHHHHHHHHHhhhccc-----
Q 012382          306 DPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVP--LILGVEVDPRGGPRVQEAAMRMYNEKKE-----  378 (465)
Q Consensus       306 DPdDFLrLK~qL~i~s~~~~~~fCfRSr~L~evtk~ckdLrh~VP--~iLgVEvDP~GGPr~QEAaM~lY~~~~~-----  378 (465)
                      +|+||++.+..|+-.|+-.  ++.||--++.--.+.+.-+++--.  ..-+.-.+...+|.+.+++.+.+...+.     
T Consensus        87 tp~~F~~FR~~L~~aSGfQ--S~q~R~iE~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~l~~~~~~~~~~  164 (262)
T d2nw8a1          87 TPSEYMGFRDVLGPSSGFQ--SLQYRYIEFLLGNKNPQMLQVFAYDPAGQARLREVLEAPSLYEEFLRYLARFGHAIPQQ  164 (262)
T ss_dssp             CHHHHTTTGGGSCSCCGGG--CHHHHHHHHHHTCCCGGGGSTTTTCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCCCCGG
T ss_pred             CHHHHHHHHHHhccCcccc--chhhchhHhhcCCcchHHHHhhcchhhHHHHHHHHhhcccHHHHHHHHHhccCCcchHH
Confidence            9999999999999888643  555564433222222222221100  0000001112234444555555443321     


Q ss_pred             ----------------------------cCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccceeeeecCCcc
Q 012382          379 ----------------------------RDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASS  430 (465)
Q Consensus       379 ----------------------------~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vmGS~Ea~gn~~~~vs~~~~  430 (465)
                                                  ....-..|+++|..++.++..|=++|-|+|.-+||+..  ||+-.    .+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~l~~~d~~l~~wR~~H~~~v~R~IG~k~--GTGGT----sg~  238 (262)
T d2nw8a1         165 YQARDWTAAHVADDTLRPVFERIYENTDRYWREYSLCEDLVDVETQFQLWRFRHMRTVMRVIGFKR--GTGGS----SGV  238 (262)
T ss_dssp             GGSCCTTSCCCCCGGGHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CSSSS----CTH
T ss_pred             HHHHhhhhhhhhhHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCC----cHH
Confidence                                        01233578999999999999999999999999999965  43322    356


Q ss_pred             hhhhhhccCCCCCCChhhHhhhhh
Q 012382          431 DSLSQLFLEPTYYPSLDAAKTFLG  454 (465)
Q Consensus       431 d~Lsq~flEP~yFPSLDaAKTFLG  454 (465)
                      +=|.+ .++-+|||.|-.++||||
T Consensus       239 ~yL~~-~~~~~~FPeLW~~rt~l~  261 (262)
T d2nw8a1         239 GFLQQ-ALALTFFPELFDVRTSVG  261 (262)
T ss_dssp             HHHHH-HTTCCSCHHHHHGGGTTT
T ss_pred             HHHHH-HhCCCcChHHHHHHHHcc
Confidence            88988 568899999999999999