Citrus Sinensis ID: 012384

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
MKIHPWWSFYSSLVDICLFLLHDLELRLPTCRAYGTKILVQHGTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV
ccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHEEEccccEEEEcccccccccEEccccccEEEccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccEEcccHHHHHHHHHHHEEEcccEEEEcccccccccccEEEEEEEEEccEEEEEEEEccEEEEEEEEEcccccccccEEEEEEccEEEEEEcccccEEEEccccccEEEccccc
ccccccEcccccHHHHHHHHHHHccEEEEEcccccccccccccEEEccEcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHccccEEEEccccHHHccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccHcccccccEEcccHHHHHHHHHHHHHcccccEEEccccccHHcccccEEEEEEcccEEEEEEEEccEEEEEEEEEcccccEEEEEEEEEcccEEEEEccccccEEEEccccEEEcEEEEEc
mkihpwwsFYSSLVDICLFLLHDLelrlptcraygtkilvqhgtphvninlemnywqslpcnlsecqepLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIeghdgyletnpstspehefiapdgklacvsysstMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKslprlrptkiaedgsimewaqdfkdpevhhrhlshlfglfpghtitieknpDLCKAAEKTLQKrgeegpgwsiTWKTALWARLHDQEHAYRMVKRLfnlvdpehekhfegglysnlfaahppfqidanfGFTAAVAEMLVQSTLNdlyllpalpwdkwssgcvkglkarggetvsicwkdgdlhevgiysnysnndhdsfktLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV
MKIHPWWSFYSSLVDICLFLLHDLELRLPTCRAYGTKILVQHGTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKvlkslprlrptkiaedgsIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLqkrgeegpgwsiTWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKiytfnrqlkctnlhqsiv
MKIHPWWSFYSSLVDICLFLLHDLELRLPTCRAYGTKILVQHGTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV
**IHPWWSFYSSLVDICLFLLHDLELRLPTCRAYGTKILVQHGTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLET********EFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAE*********GPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNL*****
*KIHPWWSFYSSLVDICLFLLHDLELRLPTCRAYGTKILVQHGTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV
MKIHPWWSFYSSLVDICLFLLHDLELRLPTCRAYGTKILVQHGTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV
*KIHPWWSFYSSLVDICLFLLHDLELRLPTCRAYGTKILVQHGTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKIHPWWSFYSSLVDICLFLLHDLELRLPTCRAYGTKILVQHGTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLHQSIV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query465 2.2.26 [Sep-21-2011]
Q8L7W8843 Alpha-L-fucosidase 2 OS=A yes no 0.881 0.486 0.679 1e-176
Q5AU81809 Alpha-fucosidase A OS=Eme no no 0.752 0.432 0.343 8e-51
A2R797793 Probable alpha-fucosidase yes no 0.756 0.443 0.315 3e-42
Q2USL3723 Probable alpha-fucosidase no no 0.679 0.437 0.274 4e-26
>sp|Q8L7W8|FUCO2_ARATH Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=At4g34260 PE=2 SV=1 Back     alignment and function desciption
 Score =  618 bits (1593), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 282/415 (67%), Positives = 340/415 (81%), Gaps = 5/415 (1%)

Query: 43  GTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDI 102
           G PH+NINL+MNYW SLP N+ ECQEPLFD+++ L+ING KTAQVNY ASGWV H  +DI
Sbjct: 428 GAPHLNINLQMNYWHSLPGNIRECQEPLFDYMSALAINGRKTAQVNYGASGWVAHQVSDI 487

Query: 103 WAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI 162
           WAK+S DRG+ VWALWPMGGAWLCTH WEHY YTMD++FL+K+ YPLLEGC SFLLDWLI
Sbjct: 488 WAKTSPDRGEAVWALWPMGGAWLCTHAWEHYTYTMDKEFLKKKGYPLLEGCTSFLLDWLI 547

Query: 163 EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDA 222
           +G DG+L+TNPSTSPEH F AP GK A VSYSSTMD+AII+EVF+ I+SA+E+L K  D 
Sbjct: 548 KGKDGFLQTNPSTSPEHMFTAPIGKPASVSYSSTMDIAIIKEVFADIVSASEILGKTNDT 607

Query: 223 LVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDL 282
           L+ KV+ +  +L PT+I++DGSI EWA+DF+DPEVHHRH+SHLFGLFPGHTIT+EK+P+L
Sbjct: 608 LIGKVIAAQAKLPPTRISKDGSIREWAEDFEDPEVHHRHVSHLFGLFPGHTITVEKSPEL 667

Query: 283 CKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLY 342
            KA E TL+KRGEEGPGWS TWK ALWARLH+ EHAYRMV  +F+LVDP +E+++EGGLY
Sbjct: 668 AKAVEATLKKRGEEGPGWSTTWKAALWARLHNSEHAYRMVTHIFDLVDPLNERNYEGGLY 727

Query: 343 SNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGET 402
           SN+F AHPPFQIDANFGF AAVAEMLVQST  DLYLLPALP DKW +G V GL+ARGG T
Sbjct: 728 SNMFTAHPPFQIDANFGFAAAVAEMLVQSTTKDLYLLPALPADKWPNGIVNGLRARGGVT 787

Query: 403 VSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKC 457
           VSI W +G+L E G++S     +      + YRG S    L  GK++TF++ L+C
Sbjct: 788 VSIKWMEGNLVEFGLWS-----EQIVSTRIVYRGISAAAELLPGKVFTFDKDLRC 837
Hydrolyzes alpha-1,2-linked fucose. Also active on fucosylated xyloglucan oligosaccharides.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 5EC: 1
>sp|Q5AU81|AFCA_EMENI Alpha-fucosidase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=afcA PE=2 SV=1 Back     alignment and function description
>sp|A2R797|AFCA_ASPNC Probable alpha-fucosidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=afcA PE=3 SV=1 Back     alignment and function description
>sp|Q2USL3|AFCA_ASPOR Probable alpha-fucosidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=afcA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
224103693 836 predicted protein [Populus trichocarpa] 0.883 0.491 0.780 0.0
359475494 817 PREDICTED: alpha-L-fucosidase 2-like [Vi 0.892 0.507 0.751 0.0
296083105 781 unnamed protein product [Vitis vinifera] 0.892 0.531 0.751 0.0
224103687 803 predicted protein [Populus trichocarpa] 0.883 0.511 0.749 0.0
224056204 808 predicted protein [Populus trichocarpa] 0.883 0.508 0.754 0.0
255573093 849 conserved hypothetical protein [Ricinus 0.892 0.488 0.735 0.0
255573091 840 conserved hypothetical protein [Ricinus 0.843 0.466 0.764 0.0
449446103 803 PREDICTED: alpha-L-fucosidase 2-like [Cu 0.892 0.516 0.715 0.0
224056206 843 predicted protein [Populus trichocarpa] 0.920 0.507 0.702 0.0
449531868 764 PREDICTED: alpha-L-fucosidase 2-like, pa 0.892 0.543 0.711 0.0
>gi|224103693|ref|XP_002313157.1| predicted protein [Populus trichocarpa] gi|222849565|gb|EEE87112.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/414 (78%), Positives = 364/414 (87%), Gaps = 3/414 (0%)

Query: 45  PHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWA 104
           PH+NINLEMNYW SLPCNLSECQEPLF+F+  LSING KTAQVNY  SGWV+HHK+DIWA
Sbjct: 420 PHLNINLEMNYWPSLPCNLSECQEPLFEFIKSLSINGCKTAQVNYKTSGWVVHHKSDIWA 479

Query: 105 KSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEG 164
           K SAD+G+VVWA+WPMGGAWLCTHLWEHY+YTMD DFL  +AYPLLEGCASFLLDWLIEG
Sbjct: 480 KPSADKGEVVWAIWPMGGAWLCTHLWEHYSYTMDEDFLRNKAYPLLEGCASFLLDWLIEG 539

Query: 165 HDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALV 224
           H GYLETNPSTSPEH FIAPDGK A VSYSSTMDMA+I+EVFSAIISA+EVL +NEDA V
Sbjct: 540 HGGYLETNPSTSPEHMFIAPDGKSASVSYSSTMDMALIKEVFSAIISASEVLGRNEDAFV 599

Query: 225 EKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCK 284
           +KV K+ PRL PTKI E+GSIMEWAQDFKDP+VHHRHLSHLFGLFPGH+ITI+KNP+LC+
Sbjct: 600 QKVHKAQPRLYPTKIDEEGSIMEWAQDFKDPDVHHRHLSHLFGLFPGHSITIDKNPELCE 659

Query: 285 AAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSN 344
           AAE +L KRGE+GPGWS TWK ALWA LH+ EH+YRMVK+L  LVDP+HE  FEGGLYSN
Sbjct: 660 AAENSLYKRGEDGPGWSTTWKIALWAHLHNSEHSYRMVKQLIKLVDPDHEVAFEGGLYSN 719

Query: 345 LFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVS 404
           LFAAHPPFQIDANFGFTA V+EMLVQS++ DLYLLPALP DKW++GCVKGLKARGG TVS
Sbjct: 720 LFAAHPPFQIDANFGFTAGVSEMLVQSSIKDLYLLPALPRDKWANGCVKGLKARGGLTVS 779

Query: 405 ICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCT 458
           ICWK+GDLHEVG+   +  +   S + +HY GT+V VNLS  KIYTFN QL+C 
Sbjct: 780 ICWKEGDLHEVGV---WLKDGSSSLQRIHYGGTTVTVNLSCRKIYTFNTQLECV 830

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475494|ref|XP_002270199.2| PREDICTED: alpha-L-fucosidase 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296083105|emb|CBI22509.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224103687|ref|XP_002313154.1| predicted protein [Populus trichocarpa] gi|222849562|gb|EEE87109.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056204|ref|XP_002298754.1| predicted protein [Populus trichocarpa] gi|222846012|gb|EEE83559.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255573093|ref|XP_002527476.1| conserved hypothetical protein [Ricinus communis] gi|223533116|gb|EEF34874.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255573091|ref|XP_002527475.1| conserved hypothetical protein [Ricinus communis] gi|223533115|gb|EEF34873.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449446103|ref|XP_004140811.1| PREDICTED: alpha-L-fucosidase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224056206|ref|XP_002298755.1| predicted protein [Populus trichocarpa] gi|222846013|gb|EEE83560.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449531868|ref|XP_004172907.1| PREDICTED: alpha-L-fucosidase 2-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
TAIR|locus:2116154843 FUC95A [Arabidopsis thaliana ( 0.881 0.486 0.679 4.5e-162
ASPGD|ASPL0000035173757 afcC [Emericella nidulans (tax 0.752 0.462 0.427 1.9e-74
ASPGD|ASPL0000008702831 afcB [Emericella nidulans (tax 0.780 0.436 0.390 2.7e-59
UNIPROTKB|G4NET6827 MGG_00050 "Uncharacterized pro 0.780 0.438 0.360 7.6e-51
ASPGD|ASPL0000014922809 afcA [Emericella nidulans (tax 0.761 0.437 0.351 8.1e-51
UNIPROTKB|Q5AU81809 afcA "Alpha-fucosidase A" [Asp 0.761 0.437 0.351 8.1e-51
TAIR|locus:2116154 FUC95A [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1578 (560.5 bits), Expect = 4.5e-162, P = 4.5e-162
 Identities = 282/415 (67%), Positives = 340/415 (81%)

Query:    43 GTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDI 102
             G PH+NINL+MNYW SLP N+ ECQEPLFD+++ L+ING KTAQVNY ASGWV H  +DI
Sbjct:   428 GAPHLNINLQMNYWHSLPGNIRECQEPLFDYMSALAINGRKTAQVNYGASGWVAHQVSDI 487

Query:   103 WAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI 162
             WAK+S DRG+ VWALWPMGGAWLCTH WEHY YTMD++FL+K+ YPLLEGC SFLLDWLI
Sbjct:   488 WAKTSPDRGEAVWALWPMGGAWLCTHAWEHYTYTMDKEFLKKKGYPLLEGCTSFLLDWLI 547

Query:   163 EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDA 222
             +G DG+L+TNPSTSPEH F AP GK A VSYSSTMD+AII+EVF+ I+SA+E+L K  D 
Sbjct:   548 KGKDGFLQTNPSTSPEHMFTAPIGKPASVSYSSTMDIAIIKEVFADIVSASEILGKTNDT 607

Query:   223 LVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDL 282
             L+ KV+ +  +L PT+I++DGSI EWA+DF+DPEVHHRH+SHLFGLFPGHTIT+EK+P+L
Sbjct:   608 LIGKVIAAQAKLPPTRISKDGSIREWAEDFEDPEVHHRHVSHLFGLFPGHTITVEKSPEL 667

Query:   283 CKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLY 342
              KA E TL+KRGEEGPGWS TWK ALWARLH+ EHAYRMV  +F+LVDP +E+++EGGLY
Sbjct:   668 AKAVEATLKKRGEEGPGWSTTWKAALWARLHNSEHAYRMVTHIFDLVDPLNERNYEGGLY 727

Query:   343 SNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGET 402
             SN+F AHPPFQIDANFGF AAVAEMLVQST  DLYLLPALP DKW +G V GL+ARGG T
Sbjct:   728 SNMFTAHPPFQIDANFGFAAAVAEMLVQSTTKDLYLLPALPADKWPNGIVNGLRARGGVT 787

Query:   403 VSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKC 457
             VSI W +G+L E G++S    +       + YRG S    L  GK++TF++ L+C
Sbjct:   788 VSIKWMEGNLVEFGLWSEQIVSTR-----IVYRGISAAAELLPGKVFTFDKDLRC 837
GO:0003824 "catalytic activity" evidence=IEA
GO:0004560 "alpha-L-fucosidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0047513 "1,2-alpha-L-fucosidase activity" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
ASPGD|ASPL0000035173 afcC [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000008702 afcB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NET6 MGG_00050 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000014922 afcA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AU81 afcA "Alpha-fucosidase A" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00090725
hypothetical protein (836 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 465
PRK13807756 maltose phosphorylase; Provisional 100.0
COG1554772 ATH1 Trehalose and maltose hydrolases (possible ph 100.0
PF03632370 Glyco_hydro_65m: Glycosyl hydrolase family 65 cent 100.0
KOG4125682 consensus Acid trehalase [Carbohydrate transport a 99.92
TIGR01577616 oligosac_amyl oligosaccharide amylase. The name of 99.01
COG3387612 SGA1 Glucoamylase and related glycosyl hydrolases 98.8
PF05592509 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; Int 98.26
TIGR01535648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 97.95
PF06202370 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR 97.57
PF04685365 DUF608: Protein of unknown function, DUF608; Inter 97.47
COG3408641 GDB1 Glycogen debranching enzyme [Carbohydrate tra 97.37
PF0363354 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-t 97.21
COG34591056 Cellobiose phosphorylase [Carbohydrate transport a 97.2
PRK10137786 alpha-glucosidase; Provisional 96.06
TIGR01561575 gde_arch glycogen debranching enzyme, archaeal typ 95.31
PRK13271569 treA trehalase; Provisional 92.29
COG4354721 Predicted bile acid beta-glucosidase [Carbohydrate 89.05
PRK13272542 treA trehalase; Provisional 85.69
KOG2119879 consensus Predicted bile acid beta-glucosidase [Ca 82.77
TIGR015311464 glyc_debranch glycogen debranching enzymye. glycog 80.53
>PRK13807 maltose phosphorylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.2e-47  Score=412.90  Aligned_cols=399  Identities=16%  Similarity=0.074  Sum_probs=295.4

Q ss_pred             cccc-hhhccc------hhhHHHHHHhhhhhhcccCC--C--CCCCCC-C-CCCc--cccccccchhccc-cCCCCcccc
Q 012384            4 HPWW-SFYSSL------VDICLFLLHDLELRLPTCRA--Y--GTKILV-Q-HGTP--HVNINLEMNYWQS-LPCNLSECQ   67 (465)
Q Consensus         4 ~~ww-~~~~~~------~d~~~~~~~~~rYll~sssr--~--g~~p~~-l-~~dy--h~n~N~qm~ywp~-~~~n~~e~~   67 (465)
                      ++.| ++|+++      .+..++...+..|.|.++.+  .  -++||+ | +.+|  |.+|++|+++.|+ +..+.||++
T Consensus       296 ~~~w~~~W~~~di~I~gd~~~q~alr~~~fhL~~s~~~~~~~~~i~a~GLsge~Y~Gh~FWDtE~f~lP~~~~~~~Pe~A  375 (756)
T PRK13807        296 TAAWAKRWEKSDVVIEGDDAAQQGIRFNIFQLFSTYYGEDARLNIGPKGFTGEKYGGATYWDTEAYCVPFYLATADPEVT  375 (756)
T ss_pred             HHHHHHHHHHCCeEEcCCHHHHHHHHHHHHHHHhccCCCCCCCCcCCCCCCcCCcCCeeeeccchhhhhhhhhccCHHHH
Confidence            4679 999986      24456788999999877743  2  135555 5 4446  9999999999999 567999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcCCCceEEccccCCCCCCCCCCCCccccc---CccCHHHHHHHHHHHHHhcCCHHHHHH
Q 012384           68 EPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWAL---WPMGGAWLCTHLWEHYNYTMDRDFLEK  144 (465)
Q Consensus        68 ~~l~~~~~~~l~~~r~~A~~~yG~~G~~~p~~~~~~g~~~~~~~~~~~~~---~~~~~aw~a~~~w~yy~~TgD~~fL~~  144 (465)
                      +.|++||++.|+.||++|++ +|++||+|||++. .|.    +.++.|..   ..+.++.||+++|+||+.|+|.+||++
T Consensus       376 r~lL~YR~~~L~~Ar~~A~~-~g~~GA~yPW~s~-~G~----E~~~~w~~~~~e~HI~adIaya~~~Y~~~TgD~~fl~~  449 (756)
T PRK13807        376 RNLLKYRYNQLPGAKENAKK-QGLKGALYPMVTF-NGI----ECHNEWEITFEEIHRNGAIAYAIYNYTNYTGDESYLKE  449 (756)
T ss_pred             HHHHHHHHHhHHHHHHHHHH-cCCCccccceEcC-CCC----cCCCCcCCCceeEechHHHHHHHHHHHHHhCCHHHHHh
Confidence            99999999999999999999 7999999999874 443    22334422   245789999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcccCC-CCeEEECCCCCC-CCCcCCCCCCccccccCchHHHHHHHHHHHHHHHHHHH-------
Q 012384          145 RAYPLLEGCASFLLDWLIEGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEV-------  215 (465)
Q Consensus       145 ~~~p~l~~~A~F~~~~l~~~~-~G~y~i~ps~sP-E~~~~~~~G~~~~~~~n~t~d~~~v~~~l~~~~~~a~~-------  215 (465)
                      .++|||.|+|+||.+++.+++ +|+|+|..+++| |++.         .++||+|||.|++++|+.++++++.       
T Consensus       450 ~G~e~l~etArfw~s~~~~~~~~~~y~I~~V~GPDEY~~---------~vdNNayTN~ma~~~l~~A~~~~~~l~~~~~~  520 (756)
T PRK13807        450 EGLEVLVEIARFWADRVHFSKRKNKYMIHGVTGPNEYEN---------NVNNNWYTNYIAAWTLEYTLENLDKVKKEAPA  520 (756)
T ss_pred             cCHHHHHHHHHHHHHheEEeCCCCeEEECCcccccccCC---------CCCCchhHHHHHHHHHHHHHHHHHHhchhhHH
Confidence            999999999999999998765 789999999999 9984         5999999999999999999999864       


Q ss_pred             -hCCCcHHHHHHHHHHcCCCC-CCccCCCC---------ceeecccCCCCCCC----Cccch------------hhhhcc
Q 012384          216 -LEKNEDALVEKVLKSLPRLR-PTKIAEDG---------SIMEWAQDFKDPEV----HHRHL------------SHLFGL  268 (465)
Q Consensus       216 -Lg~~~~~~~~~w~~i~~~L~-p~~~~~~G---------~l~ew~~~~~~~~~----~hrh~------------s~L~~l  268 (465)
                       |+++ +++.++|++++++|. |++ +..|         .+.+|..+..+.+.    .|-|.            --++.+
T Consensus       521 ~l~~~-~~e~~~w~~ia~~~~lp~~-~~~gi~~q~dgy~~l~~~d~~~~~~~~~~~~~~~~~~~i~~~qviKQADvvll~  598 (756)
T PRK13807        521 RLNVT-EEELAKWQDIVDKMYLPYD-EELGIFVQHDGFLDKDLRPVSDLPPDQRPINQNWSWDRILRSPFIKQADVLQGI  598 (756)
T ss_pred             HhcCC-HHHHHHHHHHHhCeEeccc-CCCCEEEccCCccccccCchhhcccccCCcccccCHHHHhcccEecHHHHHHHh
Confidence             5555 667889999999999 765 1222         22233221111000    01111            124455


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCChHHHHHHHHHHhcCChHHHHHHHHHHHhccCCcccc-cCCCCccccccc
Q 012384          269 FPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEK-HFEGGLYSNLFA  347 (465)
Q Consensus       269 ~P~~~i~~~~~p~l~~aa~~tl~~r~~~~~gws~~~~a~~aArlgd~e~A~~~l~~~~~~~~~~~~~-~~~~g~~~nl~~  347 (465)
                      ||+...   -+++........++.|+.|+|++|++++++++|++|+.++|+++|.+.+. +|+++.+ +..+|+      
T Consensus       599 yll~~~---f~~~~~~~n~~yYe~rT~HdSsLS~~i~ai~aa~~g~~~~A~~~f~~a~~-~Dl~~~~~~t~~Gi------  668 (756)
T PRK13807        599 YFFEDR---FTKEEKRRNFDFYEPLTVHESSLSPCVHSILAAELGKEDKAVELYLRTAR-LDLDNYNNDTEDGL------  668 (756)
T ss_pred             ccCCCC---CCHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHH-hhhhhccCCCCcch------
Confidence            665421   35666666677777788899999999999999999999999999999887 4543321 111222      


Q ss_pred             CCCCcccCccchhHHHHHHHHhh------ccCCeEEeCCCCCccccCceeecceeeecceEEEEEEeCCeEEEEEEEeCC
Q 012384          348 AHPPFQIDANFGFTAAVAEMLVQ------STLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNY  421 (465)
Q Consensus       348 ~h~pfqidg~~g~~~av~emLlq------s~~g~i~l~PalP~~~W~~gs~~gL~arG~~~V~~~~~~g~~~~~~i~s~~  421 (465)
                               +.+.++|.+.++++      .+++.|+|.|.|| ++|+..+|+ ++.||. .+++..+..++   +|+...
T Consensus       669 ---------H~~~~gG~w~~vv~Gf~Glr~~~~~L~~~P~LP-~~w~~l~f~-~~~rG~-~l~v~i~~~~~---~i~~~~  733 (756)
T PRK13807        669 ---------HITSMAGSWLAIVQGFAGMRVRDGQLSFAPFLP-KEWTSYSFK-INFRGR-LLKVKVDKQEV---TIELLS  733 (756)
T ss_pred             ---------hhhcchHHHHHHHheecceEecCCeEEEeCCCC-CccceeEEE-EEECCe-EEEEEEECCEE---EEEEcC
Confidence                     24566666666655      4556899999999 999999997 999987 35555566653   455445


Q ss_pred             CCCcccceeeeecCCeEEEEEccCCcEEEE
Q 012384          422 SNNDHDSFKTLHYRGTSVKVNLSAGKIYTF  451 (465)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i  451 (465)
                      |.+++   +.+.  |  ..+.+.+|++.+|
T Consensus       734 g~~l~---i~v~--g--~~~~l~~g~~~~~  756 (756)
T PRK13807        734 GEPLT---IEVY--G--KKVELKKGVTVTV  756 (756)
T ss_pred             CCcEE---EEEC--C--EEEEEcCCcEeeC
Confidence            55566   4332  2  3344558887764

>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG4125 consensus Acid trehalase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT Back     alignment and domain information
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide [] Back     alignment and domain information
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10137 alpha-glucosidase; Provisional Back     alignment and domain information
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative Back     alignment and domain information
>PRK13271 treA trehalase; Provisional Back     alignment and domain information
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK13272 treA trehalase; Provisional Back     alignment and domain information
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01531 glyc_debranch glycogen debranching enzymye Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
2rdy_A803 Crystal Structure Of A Putative Glycoside Hydrolase 7e-98
2eab_A899 Crystal Structure Of 1,2-A-L-Fucosidase From Bifido 1e-41
2ead_A899 Crystal Structure Of 1,2-A-L-Fucosidase From Bifido 5e-41
2eae_A898 Crystal Structure Of 1,2-A-L-Fucosidase From Bifido 8e-41
>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family Protein From Bacillus Halodurans Length = 803 Back     alignment and structure 
Iteration: 1

 Score =  354 bits (908), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 175/377 (46%), Positives = 233/377 (61%), Gaps = 7/377 (1%)
Query: 47  VNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKS 106
           +NIN E NYW +  CNL+E  +PL  F+  L+ NG KTA++NY A GWV HH  D+W ++
Sbjct: 371 LNINAEXNYWPAETCNLAELHKPLIHFIERLAANGKKTAEINYGARGWVAHHNADLWGQT 430
Query: 107 SA----DRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI 162
           +       G  VWA WP GG WL  HLWEHY +  D  +L   AYP+ +  A F LDWLI
Sbjct: 431 APVGDFGHGDPVWAFWPXGGVWLTQHLWEHYTFGEDEAYLRDTAYPIXKEAALFCLDWLI 490
Query: 163 EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDA 222
           E   GYL T+PSTSPE  F   + K   VS ++T D+++I E F   I AA+ L  +ED 
Sbjct: 491 ENEAGYLVTSPSTSPEQRFRIGE-KGYAVSSATTXDLSLIAECFDNCIQAAKRLSIDED- 548
Query: 223 LVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDL 282
            V+ +  +  RL P +I + G + EW+ DF+D +VHHRH+SHL G++PG  IT +  P+L
Sbjct: 549 FVKALSDAKQRLLPLQIGKRGQLQEWSNDFEDEDVHHRHVSHLVGIYPGRLITEQSAPNL 608
Query: 283 CKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLY 342
            +AA+ +L+ RG+EG GWS+ WK +LWAR  D     R++     L+  +      GG+Y
Sbjct: 609 FEAAKTSLEIRGDEGTGWSLGWKISLWARFKDGNRCERLLSNXLTLIKEDESXQHRGGVY 668
Query: 343 SNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGET 402
           +NLF AHPPFQID NF  TA +AE L+QS    L  LPALP D W  G VKGL+ RGG  
Sbjct: 669 ANLFGAHPPFQIDGNFSATAGIAEXLLQSHQGYLEFLPALP-DSWKDGYVKGLRGRGGYE 727
Query: 403 VSICWKDGDLHEVGIYS 419
           V + W +G L +V I S
Sbjct: 728 VDLAWTNGALVKVEIVS 744
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum (Apo Form) Length = 899 Back     alignment and structure
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complex With Substrate Length = 899 Back     alignment and structure
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum In Complexes With Products Length = 898 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
2rdy_A803 BH0842 protein; PSI-II, structural genomics, prote 1e-133
2eab_A899 Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifi 1e-114
1h54_A754 Maltose phosphorylase; hydrolase, maltose metaboli 7e-12
>2rdy_A BH0842 protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.03A {Bacillus halodurans c-125} Length = 803 Back     alignment and structure
 Score =  403 bits (1035), Expect = e-133
 Identities = 181/418 (43%), Positives = 247/418 (59%), Gaps = 10/418 (2%)

Query: 42  HGTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTD 101
                +NIN EMNYW +  CNL+E  +PL  F+  L+ NG KTA++NY A GWV HH  D
Sbjct: 366 SSNYTLNINAEMNYWPAETCNLAELHKPLIHFIERLAANGKKTAEINYGARGWVAHHNAD 425

Query: 102 IWAKSSA----DRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFL 157
           +W +++       G  VWA WPMGG WL  HLWEHY +  D  +L   AYP+++  A F 
Sbjct: 426 LWGQTAPVGDFGHGDPVWAFWPMGGVWLTQHLWEHYTFGEDEAYLRDTAYPIMKEAALFC 485

Query: 158 LDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLE 217
           LDWLIE   GYL T+PSTSPE  F   +   A  S ++TMD+++I E F   I AA+ L 
Sbjct: 486 LDWLIENEAGYLVTSPSTSPEQRFRIGEKGYAV-SSATTMDLSLIAECFDNCIQAAKRLS 544

Query: 218 KNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIE 277
            +ED  V+ +  +  RL P +I + G + EW+ DF+D +VHHRH+SHL G++PG  IT +
Sbjct: 545 IDED-FVKALSDAKQRLLPLQIGKRGQLQEWSNDFEDEDVHHRHVSHLVGIYPGRLITEQ 603

Query: 278 KNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHF 337
             P+L +AA+ +L+ RG+EG GWS+ WK +LWAR  D     R++  +  L+  +     
Sbjct: 604 SAPNLFEAAKTSLEIRGDEGTGWSLGWKISLWARFKDGNRCERLLSNMLTLIKEDESMQH 663

Query: 338 EGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKA 397
            GG+Y+NLF AHPPFQID NF  TA +AEML+QS    L  LPALP D W  G VKGL+ 
Sbjct: 664 RGGVYANLFGAHPPFQIDGNFSATAGIAEMLLQSHQGYLEFLPALP-DSWKDGYVKGLRG 722

Query: 398 RGGETVSICWKDGDLHEVGIYSNYSNN---DHDSFKTLHYRGTSVKVNLSAGKIYTFN 452
           RGG  V + W +G L +V I S  +            +   G  V+ ++      +F 
Sbjct: 723 RGGYEVDLAWTNGALVKVEIVSTKTQTCEVLTRISMRITESGEEVEGDVLDSGRMSFQ 780
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A* Length = 899 Back     alignment and structure
>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A {Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3 Length = 754 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
2eab_A899 Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifi 100.0
2rdy_A803 BH0842 protein; PSI-II, structural genomics, prote 100.0
1h54_A754 Maltose phosphorylase; hydrolase, maltose metaboli 100.0
2okx_A956 Rhamnosidase B; alpha barrel, glycoside hydrolase 99.79
3cih_A739 Putative alpha-rhamnosidase; structural genomics, 99.15
3qde_A811 Cellobiose phosphorylase; cellulase, phosphate, tr 98.77
3rrs_A822 Cellobiose phosphorylase; GH94, alpha barrel, disa 98.75
1v7w_A807 Chitobiose phosphorylase; beta-sandwich, (alpha/al 98.47
2p0v_A489 Hypothetical protein BT3781; alpha-beta protein, s 98.09
3c68_A761 Uncharacterized protein YGJK; GH63, processing alp 97.46
1ulv_A 1020 Glucodextranase; GH family 15, (alpha-alpha)6-barr 97.38
2z07_A420 Putative uncharacterized protein TTHA0978; unchara 97.22
2fba_A492 Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy 96.52
3p2c_A463 Putative glycosyl hydrolase; structural genomics, 96.36
3qt9_A427 Putative uncharacterized protein CPE0426; alpha-al 96.02
2vn4_A 599 Glucoamylase; hydrolase, carbohydrate binding, gly 96.01
1gai_A472 Glucoamylase-471; hydrolase, glycosidase, polysacc 95.58
3qry_B426 Putative uncharacterized protein; alpha-alpha six 95.43
2jg0_A535 Periplasmic trehalase; family 37, hydrolase, inhib 94.59
1lf6_A684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 91.21
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 86.22
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 83.16
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium bifidum} PDB: 2eac_A* 2ead_A* 2eae_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-99  Score=838.43  Aligned_cols=409  Identities=31%  Similarity=0.531  Sum_probs=380.4

Q ss_pred             HHHHhhhhhhcccCCC-CCCCCCC------------------CCCccccccccchhccccCCCCccccHHHHHHHHHHHH
Q 012384           19 FLLHDLELRLPTCRAY-GTKILVQ------------------HGTPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSI   79 (465)
Q Consensus        19 ~~~~~~rYll~sssr~-g~~p~~l------------------~~dyh~n~N~qm~ywp~~~~n~~e~~~~l~~~~~~~l~   79 (465)
                      ++|+|||||||||||+ |.+|++|                  +|+||+|||+||+|||++++|+|||++||++|++++++
T Consensus       374 l~f~fgRYlLissSr~~g~lP~nLqGiWs~~~g~n~~~~p~W~g~y~~NiNtqmnywPa~~~nlpE~a~pLl~y~~~ll~  453 (899)
T 2eab_A          374 LVYKYGRYLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTPWGSDFHMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVK  453 (899)
T ss_dssp             HHHHHHHHHHHHHCCTTCSSCCBTTBTCCCCCCSSTTSSSGGGGCEETTTHHHHHTSSTTTTTCGGGGHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHhhcCCCCCCCCCCcccccccccCccccCCCCcCcceeeecccccccchhhhcCCHHHHHHHHHHHHHHHH
Confidence            4799999999999997 6799997                  35689999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCC-------------ceEEccccCCCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCCHHHHHHhh
Q 012384           80 NGSKTAQVNYLAS-------------GWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRA  146 (465)
Q Consensus        80 ~~r~~A~~~yG~~-------------G~~~p~~~~~~g~~~~~~~~~~~~~~~~~~aw~a~~~w~yy~~TgD~~fL~~~~  146 (465)
                      .||++||++||++             ||+.++++++|+.++| +.++.|+.|+++++|+|+++|+||+||+|++|| +++
T Consensus       454 ~gr~~Ar~~yG~~ga~~~~~~~g~~~Gw~~~~~~~~w~~t~p-~~~~~w~~~~~~~aWla~~lweyy~yTgD~~fL-~~~  531 (899)
T 2eab_A          454 PGRVTAKVYAGAETTNPETTPIGEGEGYMAHTENTAYGWTAP-GQSFSWGWSPAAVPWILQNVYEAYEYSGDPALL-DRV  531 (899)
T ss_dssp             HHHHHHHHHHCCCCSSTTTSCTTSSSCCCCCSEECTTCCCSC-CSSHHHHCCTTHHHHHHHHHHHHHHTTCCHHHH-HHH
T ss_pred             HHHHHHHHHcCCcccccccccccCcCCeEEeeccCCcccCCC-CCCCcccccCchHHHHHHHHHHHHHhhCCHHHH-HHH
Confidence            9999999999999             8888889999999888 456788888999999999999999999999999 899


Q ss_pred             HHHHHHHHHHHHH-hcccCC---CCeEEECCCCCCCCCcCCCCCCcccc-ccCchHHHHHHHHHHHHHHHHHHHhCC---
Q 012384          147 YPLLEGCASFLLD-WLIEGH---DGYLETNPSTSPEHEFIAPDGKLACV-SYSSTMDMAIIREVFSAIISAAEVLEK---  218 (465)
Q Consensus       147 ~p~l~~~A~F~~~-~l~~~~---~G~y~i~ps~sPE~~~~~~~G~~~~~-~~n~t~d~~~v~~~l~~~~~~a~~Lg~---  218 (465)
                      ||+|+++|+||++ ++++++   +|+|++.||+|||+.+         . ++|++||+++|+++|+.+++++++||+   
T Consensus       532 yPlLkeaA~F~~d~~l~~~~~~~~G~~vi~ps~SPE~~~---------~~~~~~tydn~l~~~ll~~~i~aa~~Lg~~~~  602 (899)
T 2eab_A          532 YALLKEESHFYVNYMLHKAGSSSGDRLTTGVAYSPEQGP---------LGTDGNTYESSLVWQMLNDAIEAAKAKGDPDG  602 (899)
T ss_dssp             HHHHHHHHHHHHHHTCEECCGGGCSSEECSEEEETTEEE---------EEEECCHHHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHhhheEecCcCCCCeEEEccccCCCCCC---------CCCCCcHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            9999999999999 778887   7999999999999974         4 899999999999999999999999998   


Q ss_pred             ----------------------CcHHHHHHHHHHcCCCCCCccCCCCceeecccCCCC-------------CCCCccchh
Q 012384          219 ----------------------NEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKD-------------PEVHHRHLS  263 (465)
Q Consensus       219 ----------------------~~~~~~~~w~~i~~~L~p~~~~~~G~l~ew~~~~~~-------------~~~~hrh~s  263 (465)
                                            + ++++++|++++++|+|++++++|+|+||.+++..             .+++|||+|
T Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~w~~~~~kL~p~~i~~~G~l~EW~~d~~~~~~~~G~~i~~~~~~~~HRH~S  681 (899)
T 2eab_A          603 LVGNTTDCSADNWAKNDSGNFTD-ANANRSWSCAKSLLKPIEVGDSGQIKEWYFEGALGKKKDGSTISGYQADNQHRHMS  681 (899)
T ss_dssp             CCCCSTTCCGGGGCBCTTSCBSC-TTSCCCHHHHHHHHCCCCBCTTSCBCSSTTBCSTTBBTTSCBCTTCCTTSCCSCCG
T ss_pred             cchhhhhhhhhccccccccccCC-HHHHHHHHHHHhCCCCcccCCCceeeecccccccccccccccccccCCCcCCcchh
Confidence                                  6 6678899999999999999999999999987652             557999999


Q ss_pred             hhhccCCCCCCCCCCCHHHHHHHHHHHhhhC------CCCCChHHHHHHHHHHhcCChHHHHHHHHHHHhccCCcccccC
Q 012384          264 HLFGLFPGHTITIEKNPDLCKAAEKTLQKRG------EEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHF  337 (465)
Q Consensus       264 ~L~~l~P~~~i~~~~~p~l~~aa~~tl~~r~------~~~~gws~~~~a~~aArlgd~e~A~~~l~~~~~~~~~~~~~~~  337 (465)
                      ||+++||+++|+. ++|++.+||+++|+.|+      ++++|||.+|.++++|||||+|+|+++|+.+++          
T Consensus       682 hL~~lyPg~~I~~-~~pel~~aa~~tL~~Rg~~g~~~~~~tGws~aw~~~~~ARL~dg~~A~~~l~~ll~----------  750 (899)
T 2eab_A          682 HLLGLFPGDLITI-DNSEYMDAAKTSLRYRCFKGNVLQSNTGWAIGQRINSWARTGDGNTTYQLVELQLK----------  750 (899)
T ss_dssp             GGTTTTTSSSSCT-TCHHHHHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred             hhHhhcCccccCC-CCHHHHHHHHHHHHHhCcccCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHh----------
Confidence            9999999999995 89999999999999998      678999999999999999999999999999987          


Q ss_pred             CCCcccccccCCCCcccCccchhHHHHHHHHhhccC-----------CeEEeCCCCCccccCceeecceeeecceEEEEE
Q 012384          338 EGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTL-----------NDLYLLPALPWDKWSSGCVKGLKARGGETVSIC  406 (465)
Q Consensus       338 ~~g~~~nl~~~h~pfqidg~~g~~~av~emLlqs~~-----------g~i~l~PalP~~~W~~gs~~gL~arG~~~V~~~  406 (465)
                       ++++||||+.|+|||||||||+++||+||||||+.           |.|+|||||| ++|++|+|+||||||||+|+++
T Consensus       751 -~~~~~Nl~~~h~pfqiDgnfG~~agi~EMLlQS~~~~~~~~g~~~~g~I~LlPAlP-~~W~~Gsv~GLrarGgf~V~~~  828 (899)
T 2eab_A          751 -NAMYANLFDYHAPFQIDGNFGNTSGVDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGSVSGLVARGNFTVGTT  828 (899)
T ss_dssp             -HSBCTTCCBBSSSBCTHHHHHHHHHHHHHHEECCCEEECTTCCEEETCEEESTTCC-TTCCSEEEEEEEETTTEEEEEE
T ss_pred             -cCcCcccccCCCCeeeccchhHHHHHHHHHhccccccccccCCCcCCeEEEcCcCC-cccccCeEEEEEecCcEEEEEE
Confidence             58999999999999999999999999999999999           9999999999 9999999999999999999999


Q ss_pred             EeCCeEEEEEEEeCCCCCcccceeeeecCC------------------------eEEEEEccCCcEEEEeecc
Q 012384          407 WKDGDLHEVGIYSNYSNNDHDSFKTLHYRG------------------------TSVKVNLSAGKIYTFNRQL  455 (465)
Q Consensus       407 ~~~g~~~~~~i~s~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~G~~~~i~~~~  455 (465)
                      |++|++++++|+|.+|++|+   |++|+++                        ..++|+|++|++|+|+..+
T Consensus       829 w~~G~l~~~~i~s~~g~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~y~i~~~~  898 (899)
T 2eab_A          829 WKNGKATEVRLTSNKGKQAA---VKITAGGAQNYEVKNGDTAVNAKVVTNADGASLLVFDTTAGTTYTITKKA  898 (899)
T ss_dssp             EETTEEEEEEEEESSCCCEE---EEETTTCGGGEEEEETTEECCCEEEECTTSCEEEEECCCTTEEEEEEEC-
T ss_pred             EECCEEEEEEEEeCCCCeEE---EEeCCCCcceeEEEecCCcEEEeecccccCCceEEEEccCCCEEEEEecC
Confidence            99999999999999999999   6766622                        2378999999999998753
>2rdy_A BH0842 protein; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.03A {Bacillus halodurans c-125} Back     alignment and structure
>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A {Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3 Back     alignment and structure
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP} Back     alignment and structure
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum} Back     alignment and structure
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A* Back     alignment and structure
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A* Back     alignment and structure
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8 Back     alignment and structure
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* Back     alignment and structure
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} Back     alignment and structure
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A Back     alignment and structure
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A* Back     alignment and structure
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A* Back     alignment and structure
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A* Back     alignment and structure
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A* Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 465
d1h54a1485 a.102.1.4 (A:269-753) Lactobacillus maltose phosph 5e-60
>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase, central domain {Lactobacillus brevis [TaxId: 1580]} Length = 485 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Lactobacillus maltose phosphorylase, central domain
species: Lactobacillus brevis [TaxId: 1580]

 Score =  201 bits (513), Expect = 5e-60
 Identities = 42/385 (10%), Positives = 96/385 (24%), Gaps = 49/385 (12%)

Query: 45  PHVNINLEMNYWQS-LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIW 103
                + E   +   L     +    L  +           AQ   L  G +    T   
Sbjct: 86  GATYWDTEAFAFPVYLGITDPKVTRNLLMYRYKQLDGAYINAQEQGLK-GALFPMVTFDG 144

Query: 104 AKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI- 162
            +   +    +          +   ++ +  YT D  ++      +L   + F  D +  
Sbjct: 145 IECHNEWE--ITFEEIHRNGDIAFAIYNYTRYTGDDSYVLHEGAKVLTEISRFWADRVHF 202

Query: 163 EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNED- 221
              +     +  T  +      D        +       +  +       A+ L+ +++ 
Sbjct: 203 SKRNNQYMIHGVTGADEYENNVDNNWDTNMLAQWTLKYTLEILGKVDQDTAKQLDVSDEE 262

Query: 222 -----ALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITI 276
                 +V+++     +     +  DG + +  +         R ++  +          
Sbjct: 263 KTKWQDIVDRMYLPYDKDLNIFVQHDGFLDKDIEPVSSIPADQRPINQNWSWDKILRSPY 322

Query: 277 EKNPDL---------------CKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRM 321
            K  D+                KA     +         S    + L A LH ++ A  +
Sbjct: 323 IKQGDVLQGIWDFIDDYTPEQKKANFDFYEPLTVHESSLSPAIHSVLAADLHYEDKAVEL 382

Query: 322 VKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLV------QSTLND 375
             R                   +L   +       +          +V      +     
Sbjct: 383 YSRT---------------ARLDLDNYNNDTTDGLHITSMTGAWIAVVQGFAGMRVRDGQ 427

Query: 376 LYLLPALPWDKWSSGCVKGLKARGG 400
           L+  P LP   W+S   +    R  
Sbjct: 428 LHYAPFLP-KTWTSYTFR-QVFRDR 450

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
d1h54a1485 Lactobacillus maltose phosphorylase, central domai 100.0
d1v7wa1531 Chitobiose phosphorylase ChbP {Vibrio proteolyticu 99.83
d1lf6a1397 Bacterial glucoamylase, C-terminal domain {Thermoa 97.26
d2fbaa1492 Glucoamylase {Yeast (Saccharomycopsis fibuligera) 96.07
d1gaia_472 Glucoamylase {Aspergillus awamori, variant x100 [T 94.61
d1ulva1413 Glucodextranase, domain A {Arthrobacter globiformi 94.13
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 89.34
d2jg0a1511 Periplasmic trehalase TreA {Escherichia coli [TaxI 87.89
d2nvpa1426 Hypothetical protein CPF0428 {Clostridium perfring 87.04
>d1h54a1 a.102.1.4 (A:269-753) Lactobacillus maltose phosphorylase, central domain {Lactobacillus brevis [TaxId: 1580]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyltransferase family 36 C-terminal domain
domain: Lactobacillus maltose phosphorylase, central domain
species: Lactobacillus brevis [TaxId: 1580]

Probab=100.00  E-value=4.7e-62  Score=511.49  Aligned_cols=390  Identities=12%  Similarity=0.001  Sum_probs=325.5

Q ss_pred             cccc-hhhccch------hhHHHHHHhhhhhhcccCCCCCCCCCC-----C-CCc--cccccccchhccccC-CCCcccc
Q 012384            4 HPWW-SFYSSLV------DICLFLLHDLELRLPTCRAYGTKILVQ-----H-GTP--HVNINLEMNYWQSLP-CNLSECQ   67 (465)
Q Consensus         4 ~~ww-~~~~~~~------d~~~~~~~~~rYll~sssr~g~~p~~l-----~-~dy--h~n~N~qm~ywp~~~-~n~~e~~   67 (465)
                      .+|| +||+++.      +....+++++||+|+|++|++..|.++     + .+|  |.+||+||++||.+. .|+||++
T Consensus        30 ~~~w~~~~~r~~i~l~~d~~l~~~~~~~~Y~l~~s~~~~~~~~~~~~~Gl~~~~~~G~~~wd~~~~~~p~~l~~~~pe~~  109 (485)
T d1h54a1          30 TAIWAQRWEKSDVVIKGDDESQQGIRFNLFQLFSTYYGEDARLNIGPKGFTGEKYGGATYWDTEAFAFPVYLGITDPKVT  109 (485)
T ss_dssp             HHHHHHHHHTTCEEEESCHHHHHHHHHHHHHHHHHCCSSCTTCCCCTTTTSCCTTCSSBCTHHHHTHHHHHHHHSCHHHH
T ss_pred             HHHHHHHhCCceEEeCCCHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHhcCHHHH
Confidence            5799 9999873      334578999999999999877777655     2 223  467899999999975 5999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhcCCCceEEccccCCCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCCHHHHHHhhH
Q 012384           68 EPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAY  147 (465)
Q Consensus        68 ~~l~~~~~~~l~~~r~~A~~~yG~~G~~~p~~~~~~g~~~~~~~~~~~~~~~~~~aw~a~~~w~yy~~TgD~~fL~~~~~  147 (465)
                      +++++|+.+.++.+|++|++ ||++|+++|+.++.++...+.  ...+..+.+.++|+++++|+||+||+|++||++++|
T Consensus       110 ~~~~~~~~~~l~~ar~~A~~-~g~~G~~~p~~~~~~~~~~~~--~~~~~~~~~~~~wi~~~~~~yy~~TgD~~~L~e~~~  186 (485)
T d1h54a1         110 RNLLMYRYKQLDGAYINAQE-QGLKGALFPMVTFDGIECHNE--WEITFEEIHRNGDIAFAIYNYTRYTGDDSYVLHEGA  186 (485)
T ss_dssp             HHHHHHHHTTHHHHHHHHHT-TTCCSCCCCSSBSSSSBCCCC--HHHHTTCTHHHHHHHHHHHHHHHHHCCCTTTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hccCCCccceeCCCCCCCCCC--CCCcccccccchHHHHHHHHHHHhcCcHHHHHhccc
Confidence            99999999999999999998 899999999999888765331  122234455689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCC-CCeEEECCCCCCCCCcCCCCCCccccccCchHHHHHHHHHHHHHHH--------HHHHhCC
Q 012384          148 PLLEGCASFLLDWLIEGH-DGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIIS--------AAEVLEK  218 (465)
Q Consensus       148 p~l~~~A~F~~~~l~~~~-~G~y~i~ps~sPE~~~~~~~G~~~~~~~n~t~d~~~v~~~l~~~~~--------~a~~Lg~  218 (465)
                      |+|+++|+||+++++.++ +|+|++.+++|||+.+.        .+.|+.+++.++.+.+..+++        +++.|++
T Consensus       187 pll~e~a~F~~~~l~~~~~~g~~~~~~~~~p~~~~~--------~~~~~~~~~~~~~~~l~~a~~~~~~l~~~~~~~l~~  258 (485)
T d1h54a1         187 KVLTEISRFWADRVHFSKRNNQYMIHGVTGADEYEN--------NVDNNWDTNMLAQWTLKYTLEILGKVDQDTAKQLDV  258 (485)
T ss_dssp             HHHHHHHHHHHHHCEEETTTTEEECCSBCCSSTTSC--------SBSCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHCC
T ss_pred             HHHHHHHHHHHhheEEeCCCCeEecCCCCccccccc--------ccCCCcceehHHHHHHHHHHHHHHHhHHHHHHHhCC
Confidence            999999999999998765 89999999999976542        478999999999999998876        6788999


Q ss_pred             CcHHHHHHHHHHcCCCC-CC------ccCCCCceeecccCCCCCCCCccchhhhhccCCCCCCCCCCC------------
Q 012384          219 NEDALVEKVLKSLPRLR-PT------KIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKN------------  279 (465)
Q Consensus       219 ~~~~~~~~w~~i~~~L~-p~------~~~~~G~l~ew~~~~~~~~~~hrh~s~L~~l~P~~~i~~~~~------------  279 (465)
                      + .++.++|++++++|+ |+      .+..+|.+.+|.+++.....+|||.+|+++++|...+...++            
T Consensus       259 ~-~~~~~~w~~~~~~L~~p~~~~~g~~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  337 (485)
T d1h54a1         259 S-DEEKTKWQDIVDRMYLPYDKDLNIFVQHDGFLDKDIEPVSSIPADQRPINQNWSWDKILRSPYIKQGDVLQGIWDFID  337 (485)
T ss_dssp             C-HHHHHHHHHHHHTBCCCEETTTTEECSSTTGGGSCCCCGGGSCGGGCSGGGTSCHHHHHHSSCBSSCSHHHHHHHTTT
T ss_pred             C-HHHHHHHHHHHhcCCCCCCcCCCccccccceeecccccccccCcccCCchhhcccccccCccccccHHHHhhcccCCC
Confidence            8 888999999999997 33      234678889998888778889999999999999877665444            


Q ss_pred             ---HHHHHHHHHHHhhhCCCCCChHHHHHHHHHHhcCChHHHHHHHHHHHhccCCcccccCCCCcccccccCCCCcccCc
Q 012384          280 ---PDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDA  356 (465)
Q Consensus       280 ---p~l~~aa~~tl~~r~~~~~gws~~~~a~~aArlgd~e~A~~~l~~~~~~~~~~~~~~~~~g~~~nl~~~h~pfqidg  356 (465)
                         +++.+++.+.+..++.+++|||.+|+++++||+|++|+|+++|.+.+.               .++++.|++++.++
T Consensus       338 ~~~~~~~~~~~~~y~~~~~~~~~~s~~~~a~~~a~lg~~~~A~~~~~~~~~---------------~~l~~~~~~~~~g~  402 (485)
T d1h54a1         338 DYTPEQKKANFDFYEPLTVHESSLSPAIHSVLAADLHYEDKAVELYSRTAR---------------LDLDNYNNDTTDGL  402 (485)
T ss_dssp             SSCHHHHHHHHHHHGGGBCCCSTTHHHHHHHHHHHTTCHHHHHHHHTTTTT---------------TTTTTTTSCGGGCC
T ss_pred             cCCHHHHHHHHHHHhccCCCCCccCHHHHHHHHHhcccHHHHHHHHHHhcc---------------cchhhcCCCCCCCc
Confidence               455666677777788888999999999999999999999998866443               44556788888888


Q ss_pred             cchhHHHHHHHH------hhccCCeEEeCCCCCccccCceeecceeeecceEEEEEEeCCeEEEEEEEeCCCCCcc
Q 012384          357 NFGFTAAVAEML------VQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDH  426 (465)
Q Consensus       357 ~~g~~~av~emL------lqs~~g~i~l~PalP~~~W~~gs~~gL~arG~~~V~~~~~~g~~~~~~i~s~~~~~~~  426 (465)
                      ++|.++|+.+||      ||+++|.|+|+|+|| ++|+.++|+ +++||++ ++++++++.+ ++++.|  |.+|+
T Consensus       403 ~~~~~ag~~~~l~~g~~Glq~~~~~l~l~PalP-~~W~~~~~~-~~~rG~~-~~i~v~~~~~-~~~~~~--g~p~~  472 (485)
T d1h54a1         403 HITSMTGAWIAVVQGFAGMRVRDGQLHYAPFLP-KTWTSYTFR-QVFRDRL-IEVSVHADGP-HFKLLS--GEPLT  472 (485)
T ss_dssp             CGGGGGHHHHHHHTTTSCCEEETTEEEECCCCC-TTCSEEEEE-EEETTEE-EEEEEETTEE-EEEEEE--SSCEE
T ss_pred             chhhHHHHHHHHHHHhcceeeeCCEEEEeCCCC-CCCCccEEE-EEECCeE-EEEEEECCeE-EEEEcc--CCeEE
Confidence            999999999998      589999999999999 999999997 9999985 6777788763 455554  66787
>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d2fbaa1 a.102.1.1 (A:1-492) Glucoamylase {Yeast (Saccharomycopsis fibuligera) [TaxId: 4944]} Back     information, alignment and structure
>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant x100 [TaxId: 105351]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428 {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure