Citrus Sinensis ID: 012393

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
MKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEcEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkvGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQysgksssatmynagdtddkellinptnnlagatvktSEDAVSLMKSVQAGTHLNICRiytrglayPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA
mknadqqrHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLestknsevltmkEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesveeqcivlsednfelknkqsfMRDKIKILESslnraniekaasakevnhRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQysgksssaTMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA
MKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAmmmillilimSYTITGLTFQVLLA
***************************************LKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS*************FI**********************************************************************************************************************************************LYSAIWDMETLIE*******************CIVLS*******************************************LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL**********************LI*****LAGATV*****AVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLL*
****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KVIAMMMILLILIMSYTITGLTFQVLLA
MKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL****************LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL**************SMLYSAIWDMETLIEDLK**************EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA
****DQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA
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MKNADQQRHILRMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSExxxxxxxxxxxxxxxxxxxxxxxxxxxxFQTSQEQLNEMDNFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxINFLKGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQSMLYSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEFVKKVIAMMMILLILIMSYTITGLTFQVLLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query464 2.2.26 [Sep-21-2011]
A8MQR0627 WPP domain-interacting ta yes no 0.823 0.609 0.583 1e-111
Q8L7E5703 WPP domain-interacting ta no no 0.967 0.638 0.370 6e-71
>sp|A8MQR0|WIT2_ARATH WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1 Back     alignment and function desciption
 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/394 (58%), Positives = 299/394 (75%), Gaps = 12/394 (3%)

Query: 1   MKNAD-QQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV 59
           +K +D + ++ LRMLEKSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +
Sbjct: 174 LKPSDLRHKNALRMLEKSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFI 233

Query: 60  WGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL 119
           WGRFLEA+NS+EVL GISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++
Sbjct: 234 WGRFLEADNSSEVLTGISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLV 293

Query: 120 QKLESTKN------SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIE 173
           QKLE T +      SEVLT++E VKS E++LK +++ L++ NA  Q     L EM+N  E
Sbjct: 294 QKLEGTISENSEIVSEVLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANE 353

Query: 174 SLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEI 233
           S+KE+L+ AESRAES E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+
Sbjct: 354 SVKENLFEAESRAESGEAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEV 413

Query: 234 QLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFE 293
           Q+Q +KVSSEA+QEQQ+MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N E
Sbjct: 414 QVQNSKVSSEANQEQQNMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSE 473

Query: 294 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 353
           L    SF+R K K LE+ L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+YS
Sbjct: 474 LNKDVSFLRQKAKSLEAMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYS 533

Query: 354 LTSENKLLVEKLQYSGKSSSATMYNAGDTDDKEL 387
           L  ENK+L        + S+    N     DKEL
Sbjct: 534 LAKENKIL-----RVNQCSNTYQRNGSYAGDKEL 562
Together with WIT1, required for the nuclear envelope docking of RANGAP proteins in root tips.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L7E5|WIT1_ARATH WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
255547013 601 conserved hypothetical protein [Ricinus 0.844 0.652 0.647 1e-134
297738216 735 unnamed protein product [Vitis vinifera] 0.872 0.551 0.609 1e-130
224111830502 predicted protein [Populus trichocarpa] 0.756 0.699 0.686 1e-128
147817708 745 hypothetical protein VITISV_040555 [Viti 0.883 0.550 0.568 1e-122
449463561 589 PREDICTED: WPP domain-interacting tail-a 0.825 0.650 0.606 1e-122
359473487 629 PREDICTED: WPP domain-interacting tail-a 0.75 0.553 0.629 1e-117
356502676 607 PREDICTED: WPP domain-interacting tail-a 0.808 0.617 0.591 1e-114
356498101 607 PREDICTED: WPP domain-interacting tail-a 0.885 0.677 0.561 1e-112
30697764 627 WPP domain-interacting tail-anchored pro 0.823 0.609 0.583 1e-109
145327191 582 WPP domain-interacting tail-anchored pro 0.864 0.689 0.555 1e-109
>gi|255547013|ref|XP_002514564.1| conserved hypothetical protein [Ricinus communis] gi|223546168|gb|EEF47670.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/403 (64%), Positives = 323/403 (80%), Gaps = 11/403 (2%)

Query: 4   ADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRF 63
           A+Q+RHILRMLEK LARELDLEK +SEL +NEEQLKLKLH+TEQVA  MEEAAEVVWGRF
Sbjct: 204 AEQKRHILRMLEKCLARELDLEKNLSELRRNEEQLKLKLHYTEQVALHMEEAAEVVWGRF 263

Query: 64  LEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLE 123
           LEAEN+AEVLMGISKEM GR QI QFNLNGS QRE+ELKS+L   +EQL AKD  L+KLE
Sbjct: 264 LEAENAAEVLMGISKEMAGRLQIFQFNLNGSFQREAELKSQLHSCLEQLDAKDAALKKLE 323

Query: 124 S------TKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKE 177
                   K+S+V ++ EKV SLEEQLK SE+RL++AN   + SQEQ++EM + +E +KE
Sbjct: 324 GKIGEHIAKSSQVPSLMEKVNSLEEQLKRSELRLKHANDFIEESQEQVSEMVSIVEKMKE 383

Query: 178 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 237
           S+Y AESRAE+AE KVTQLTDTN ELS+EI+FLK + +SNTKKV +LE Q+R+LEIQ+Q 
Sbjct: 384 SIYEAESRAETAEAKVTQLTDTNSELSDEISFLKSSAESNTKKVSLLEKQVRELEIQVQH 443

Query: 238 AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNK 297
           +K SSEASQEQQ+MLY+AIWDMETLIEDLKSKVSKAESKTE+VE+QCI+LSE N EL  +
Sbjct: 444 SKASSEASQEQQNMLYAAIWDMETLIEDLKSKVSKAESKTETVEDQCILLSETNMELDKE 503

Query: 298 QSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 357
            +F+R K++ LE+SL+RAN  KA SAKE+N  T L+ + VMQL+ +R+ IQ Q++SL  E
Sbjct: 504 LNFLRSKVEGLEASLDRANNSKATSAKEINLTTTLIKDTVMQLSRERDYIQNQLFSLMKE 563

Query: 358 NKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATV 400
           NKLLVEKL    + +S T +  GD D+K++L +  N L+  T 
Sbjct: 564 NKLLVEKL----RDASITGFKHGDNDNKKVLFSE-NGLSNQTC 601

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738216|emb|CBI27417.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111830|ref|XP_002315993.1| predicted protein [Populus trichocarpa] gi|222865033|gb|EEF02164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147817708|emb|CAN75587.1| hypothetical protein VITISV_040555 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463561|ref|XP_004149502.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus] gi|449481214|ref|XP_004156116.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359473487|ref|XP_002267767.2| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356502676|ref|XP_003520143.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356498101|ref|XP_003517892.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|30697764|ref|NP_177057.2| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|205830832|sp|A8MQR0.1|WIT2_ARATH RecName: Full=WPP domain-interacting tail-anchored protein 2 gi|332196737|gb|AEE34858.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|145327191|ref|NP_001077797.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|334183748|ref|NP_001185353.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196738|gb|AEE34859.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196739|gb|AEE34860.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
TAIR|locus:2205470627 WIT2 "AT1G68910" [Arabidopsis 0.823 0.609 0.586 3.8e-110
TAIR|locus:2148057703 WIT1 "AT5G11390" [Arabidopsis 0.793 0.523 0.328 8.9e-43
DICTYBASE|DDB_G0286985 1024 zipA "zipper-like domain-conta 0.775 0.351 0.241 2e-14
DICTYBASE|DDB_G0290503 1492 DDB_G0290503 [Dictyostelium di 0.840 0.261 0.196 2.5e-13
ZFIN|ZDB-GENE-040910-6 1000 sycp1 "synaptonemal complex pr 0.760 0.353 0.242 5.3e-13
UNIPROTKB|O15083 957 ERC2 "ERC protein 2" [Homo sap 0.816 0.396 0.217 8.3e-13
SGD|S000005721821 SLK19 "Kinetochore-associated 0.801 0.453 0.218 8.6e-13
MGI|MGI:1098749 957 Erc2 "ELKS/RAB6-interacting/CA 0.816 0.396 0.214 1.1e-12
UNIPROTKB|Q8TBA6731 GOLGA5 "Golgin subfamily A mem 0.862 0.547 0.244 1.2e-12
RGD|708372 957 Erc2 "ELKS/RAB6-interacting/CA 0.816 0.396 0.217 2.3e-12
TAIR|locus:2205470 WIT2 "AT1G68910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
 Identities = 231/394 (58%), Positives = 302/394 (76%)

Query:     1 MKNAD-QQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV 59
             +K +D + ++ LRMLEKSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +
Sbjct:   174 LKPSDLRHKNALRMLEKSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFI 233

Query:    60 WGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL 119
             WGRFLEA+NS+EVL GISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++
Sbjct:   234 WGRFLEADNSSEVLTGISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLV 293

Query:   120 QKLEST--KNSE----VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIE 173
             QKLE T  +NSE    VLT++E VKS E++LK +++ L++ NA  Q     L EM+N  E
Sbjct:   294 QKLEGTISENSEIVSEVLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANE 353

Query:   174 SLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEI 233
             S+KE+L+ AESRAES E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+
Sbjct:   354 SVKENLFEAESRAESGEAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEV 413

Query:   234 QLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFE 293
             Q+Q +KVSSEA+QEQQ+MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N E
Sbjct:   414 QVQNSKVSSEANQEQQNMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSE 473

Query:   294 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 353
             L    SF+R K K LE+ L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+YS
Sbjct:   474 LNKDVSFLRQKAKSLEAMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYS 533

Query:   354 LTSENKLLVEKLQYSGKSSSATMYNAGDTDDKEL 387
             L  ENK+L  ++    + S+    N     DKEL
Sbjct:   534 LAKENKIL--RVN---QCSNTYQRNGSYAGDKEL 562
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2148057 WIT1 "AT5G11390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040910-6 sycp1 "synaptonemal complex protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|O15083 ERC2 "ERC protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
SGD|S000005721 SLK19 "Kinetochore-associated protein required for chromosome segregation" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:1098749 Erc2 "ELKS/RAB6-interacting/CAST family member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TBA6 GOLGA5 "Golgin subfamily A member 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|708372 Erc2 "ELKS/RAB6-interacting/CAST family member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8MQR0WIT2_ARATHNo assigned EC number0.58370.82320.6092yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021167001
SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (659 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-08
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-06
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 3e-05
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 4e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 2e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
pfam07888546 pfam07888, CALCOCO1, Calcium binding and coiled-co 0.003
pfam07888546 pfam07888, CALCOCO1, Calcium binding and coiled-co 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 67/356 (18%), Positives = 161/356 (45%), Gaps = 26/356 (7%)

Query: 17   SLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 76
            SLA++ +L++   EL + E QL+      + +   +              E+  E L   
Sbjct: 662  SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSL-----------EDLLEELRRQ 710

Query: 77   SKEMLGRFQIVQFNLNGSLQRESELKSKLGDF---IEQLKAKDMVLQKLESTKNSEVLTM 133
             +E+  + + ++  L    +   +L+S+L +    +E+L+ +   LQ+       E+ ++
Sbjct: 711  LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770

Query: 134  KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 193
            +E +  L+E+++E E + Q      +  +E+L E +  +++L+  L   E R E  E+++
Sbjct: 771  EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 194  TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLY 253
             +L +   EL E+++ L+   +   K++  L+ +L +LE + ++ +   +  +E++  L 
Sbjct: 831  EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 254  SAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSED---------NFELKNKQSFMRDK 304
              + ++E+ + +LK ++ K   + E +E +   L  +                ++ +  +
Sbjct: 891  EELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950

Query: 305  IKILESSLNR---ANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 357
            I+ LE  +      N+      +EV  R + +      L   +E + + +  L  E
Sbjct: 951  IERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006

Length = 1163
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 464
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.99
PRK02224 880 chromosome segregation protein; Provisional 98.67
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.66
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.47
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 98.45
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.43
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.27
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 98.26
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 98.25
PRK02224880 chromosome segregation protein; Provisional 98.12
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.1
COG11961163 Smc Chromosome segregation ATPases [Cell division 98.0
KOG0996 1293 consensus Structural maintenance of chromosome pro 97.94
PHA02562562 46 endonuclease subunit; Provisional 97.9
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.79
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.71
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.69
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 97.59
PF00038312 Filament: Intermediate filament protein; InterPro: 97.47
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 97.35
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.34
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 97.3
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.24
PRK04778569 septation ring formation regulator EzrA; Provision 97.2
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 97.15
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.94
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 96.91
PF00038312 Filament: Intermediate filament protein; InterPro: 96.86
PLN02939 977 transferase, transferring glycosyl groups 96.77
PRK04863 1486 mukB cell division protein MukB; Provisional 96.73
KOG1003205 consensus Actin filament-coating protein tropomyos 96.72
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 96.67
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 96.55
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 96.53
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.35
KOG1003205 consensus Actin filament-coating protein tropomyos 96.32
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 96.3
PHA02562562 46 endonuclease subunit; Provisional 96.23
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 96.19
KOG0971 1243 consensus Microtubule-associated protein dynactin 95.94
KOG09331174 consensus Structural maintenance of chromosome pro 95.89
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.88
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 95.84
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 95.72
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 95.72
KOG0933 1174 consensus Structural maintenance of chromosome pro 95.71
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 95.65
PRK03918 880 chromosome segregation protein; Provisional 95.64
PRK04863 1486 mukB cell division protein MukB; Provisional 95.62
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.61
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 95.58
PRK03918880 chromosome segregation protein; Provisional 95.44
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 95.42
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 95.3
PRK01156895 chromosome segregation protein; Provisional 95.23
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 95.22
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 95.16
PF14662193 CCDC155: Coiled-coil region of CCDC155 95.12
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 94.94
COG5185622 HEC1 Protein involved in chromosome segregation, i 94.76
KOG0018 1141 consensus Structural maintenance of chromosome pro 94.54
PRK11637428 AmiB activator; Provisional 94.44
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 94.31
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.28
PF05701522 WEMBL: Weak chloroplast movement under blue light; 93.96
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 93.89
KOG0963 629 consensus Transcription factor/CCAAT displacement 93.69
PRK11637428 AmiB activator; Provisional 93.68
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 93.65
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 93.46
PF05701522 WEMBL: Weak chloroplast movement under blue light; 93.17
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 93.07
PRK09039343 hypothetical protein; Validated 92.76
PF14662193 CCDC155: Coiled-coil region of CCDC155 92.3
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 92.19
PRK11281 1113 hypothetical protein; Provisional 91.94
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 91.93
TIGR02977219 phageshock_pspA phage shock protein A. Members of 91.62
KOG1899 861 consensus LAR transmembrane tyrosine phosphatase-i 91.4
PRK04778569 septation ring formation regulator EzrA; Provision 90.5
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 90.46
PF05010207 TACC: Transforming acidic coiled-coil-containing p 90.14
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 90.07
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 89.65
PF15294278 Leu_zip: Leucine zipper 89.43
PRK10698222 phage shock protein PspA; Provisional 89.29
PF14073178 Cep57_CLD: Centrosome localisation domain of Cep57 89.0
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 88.9
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 88.85
PF05010207 TACC: Transforming acidic coiled-coil-containing p 88.84
KOG00181141 consensus Structural maintenance of chromosome pro 88.55
PRK09039343 hypothetical protein; Validated 88.4
PF13851201 GAS: Growth-arrest specific micro-tubule binding 88.13
PF13851201 GAS: Growth-arrest specific micro-tubule binding 88.1
PRK01156 895 chromosome segregation protein; Provisional 88.05
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 88.03
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 87.9
KOG0963629 consensus Transcription factor/CCAAT displacement 87.64
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 87.36
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 86.78
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 86.33
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 85.8
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 85.7
PRK11281 1113 hypothetical protein; Provisional 85.63
PF05911769 DUF869: Plant protein of unknown function (DUF869) 85.53
PRK10929 1109 putative mechanosensitive channel protein; Provisi 85.22
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 82.66
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 82.21
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 80.44
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information 
Probab=98.99  E-value=1.9e-07  Score=89.45  Aligned_cols=231  Identities=26%  Similarity=0.314  Sum_probs=173.4

Q ss_pred             hhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHH
Q 012393           41 KLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ  120 (464)
Q Consensus        41 kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Le  120 (464)
                      |+..+.++....++-...+-..+=+++...+-.-+....|..|++.++-+|.....|=.....||......+......+.
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k   81 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK   81 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666666666666677777777778899999999999998888888999999999988888888877


Q ss_pred             HhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhh
Q 012393          121 KLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN  200 (464)
Q Consensus       121 kl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN  200 (464)
                      .|+..    ..+--+|+..||.+|++.......+....+....++.-++       ..+.+||.|++.++++|..|-+. 
T Consensus        82 ~lE~r----~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E-------~~Le~aEeR~e~~E~ki~eLE~e-  149 (237)
T PF00261_consen   82 VLENR----EQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLE-------QELERAEERAEAAESKIKELEEE-  149 (237)
T ss_dssp             HHHHH----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhchhHHHHHHH-
Confidence            77764    3466788888888888888888777777665555555444       44557777777777777655432 


Q ss_pred             HHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhh
Q 012393          201 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESV  280 (464)
Q Consensus       201 ~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~  280 (464)
                            |..+              .+.|+.+           +++.+   -......+++.-|.+|..++..+|.||+.+
T Consensus       150 ------l~~~--------------~~~lk~l-----------E~~~~---~~~~re~~~e~~i~~L~~~lkeaE~Rae~a  195 (237)
T PF00261_consen  150 ------LKSV--------------GNNLKSL-----------EASEE---KASEREDEYEEKIRDLEEKLKEAENRAEFA  195 (237)
T ss_dssp             ------HHHH--------------HHHHHHH-----------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHH--------------HHHHHHh-----------hhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  2222              2223322           12222   124457888999999999999999999999


Q ss_pred             hhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHH
Q 012393          281 EEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI  317 (464)
Q Consensus       281 E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~  317 (464)
                      |..|..|-..+-.|..+|...+.+..++..-|+.+..
T Consensus       196 E~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~  232 (237)
T PF00261_consen  196 ERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLN  232 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987764

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF14662 CCDC155: Coiled-coil region of CCDC155 Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>PF15294 Leu_zip: Leucine zipper Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57 Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-13
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 78.0 bits (192), Expect = 2e-15
 Identities = 55/307 (17%), Positives = 125/307 (40%), Gaps = 10/307 (3%)

Query: 78   KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 137
             E L R +  Q      L+   +  ++L +    L+ K     +L +      + +  K 
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 138  KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 197
            + LEE L E E R++      Q  Q +  +M   +  L+E L   E+  +  + +     
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 198  DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW 257
                ++ ++I  ++  N+  TK+  +LE ++ DL   L + +  ++   + ++   S I 
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042

Query: 258  DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 317
            ++E  ++  +    + E     +E +   L E   EL+ + + ++ ++   E  L  A  
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 318  EKAASAKEVNHRTKLMMEMVMQLA----------TQRELIQKQVYSLTSENKLLVEKLQY 367
                   + N+  K + E+   ++            R   +KQ   L+ E + L  +L+ 
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162

Query: 368  SGKSSSA 374
            +  +++ 
Sbjct: 1163 TLDTTAT 1169
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.74
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.6
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.19
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.18
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 97.83
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 97.07
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 96.58
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 95.42
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 95.08
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 94.97
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 93.81
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 93.29
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 92.76
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 91.83
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 91.09
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 90.0
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 89.51
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 89.08
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 88.36
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 87.13
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 83.63
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 83.18
3tnu_B129 Keratin, type II cytoskeletal 5; coiled-coil, stru 82.85
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 81.8
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 81.26
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 80.9
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=98.74  E-value=4.4e-05  Score=66.81  Aligned_cols=54  Identities=7%  Similarity=-0.003  Sum_probs=21.3

Q ss_pred             HHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHh
Q 012393           35 EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQ   88 (464)
Q Consensus        35 eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Q   88 (464)
                      ...+...+..++.+...++.....+...+-++....+-+......+...++..+
T Consensus        15 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (284)
T 1c1g_A           15 KENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQ   68 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444443333333333333333333333333333333
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00