Citrus Sinensis ID: 012419

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
MTDAGLYEFEYGDCESSGLLHDENGFPSFQDNDDDDDDDEEEEEKEESFADDFYRCGTDWSCLLQTERKLKQANLFDMWGLKSNSESEANCLFSPPMKKLKASNGKSTATHLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCKKLMI
cccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEEEccccccccccccEEEEccccHHHccccccccccccEEccHHHHHHHHHHHccccccEEccccccEEEEccEEEEEEEcccccccEEEEEEEEccEEEEEEcccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccEEEEcHHHHHHHHHcccccccccccccccccEEEEEccccccHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHHHHHccc
ccccccEEEEccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHcccccccHccccccHHccccHHcHcccccccHHHHcccccccccccHHHHHccccccccccccccccccEEcccccEEEEcEEcccccccEEEEEEccccccccccccccccccEEccHHHHHHHHHHccccHHcEEEcccccEEEEccEEEEEEEccccccEEEEEEEccccEEEEEcccccccHHHHHcHHHHcccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHccEEEEcHHHHHHHHHcccHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHcc
mtdaglyefeygdcessgllhdengfpsfqdndddddddeeeEEKEESfaddfyrcgtdwsCLLQTERKLKQANlfdmwglksnseseanclfsppmkklkasngkstaTHLKKIVdrscpfykkipgtpftvdafrygsikgcsaYFLTHFHydhygglgkrwshgpiycsplTARLVRMCLlvnpsyihplelntehvIDGVKVTLLeanhcpgaALIHFRLqdgqcylhtgdfrasrlmqsypllvNHRVNVLYLdttycnpkykfpskedVLNYVVRLTKnclkkqpktLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVlqsfdwpelsgnlctqgndtllhvlpmsslkfETLKDYLKPYGNQYAAVLAfrptgwtysetvgnqldlirplsrgnitiygvpysehssfTELREFVqflrpdkiiptvnVWNAASREKMQSFFREWLSCKKLMI
MTDAGLYEFEYGDCESSGLLHDENGFPSFQDNDDDDDDDEEEEEKeesfaddfyrcGTDWSCLLQTERKLKQANLFDMWGLKSNSESEANCLFSPPMkklkasngkstathlkkivdrscpfykkIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNpkykfpskedVLNYVVRLTknclkkqpktlVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCKKLMI
MTDAGLYEFEYGDCESSGLLHDENGFPSFQdndddddddeeeeekeesfaddFYRCGTDWSCLLQTERKLKQANLFDMWGLKSNSESEANCLFSPPMKKLKASNGKSTATHLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCKKLMI
**************************************************DDFYRCGTDWSCLLQTERKLKQANLFDMWGL*****************************HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCK****
******Y*FEYGDCESSGLLHDENG***********************************************************************************************PFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDL*RPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCKKLM*
MTDAGLYEFEYGDCESSGLLHDENGFPSFQD******************ADDFYRCGTDWSCLLQTERKLKQANLFDMWGLKSNSESEANCLFSPPMKK**********THLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCKKLMI
***AGLYEFEYGDCESSGLLHDENGFPSFQDN*******EE****EESFADDFYRCGTDWSCLLQTERKLKQANLFDMWGLKS*********************************DRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCKKL**
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MTDAGLYEFEYGDCESSGLLHDENGFPSFQDNDDDDDDDEEEEEKEESFADDFYRCGTDWSCLLQTERKLKQANLFDMWGLKSNSESEANCLFSPPMKKLKASNGKSTATHLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREWLSCKKLMI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query464 2.2.26 [Sep-21-2011]
Q38961484 DNA cross-link repair pro yes no 0.907 0.869 0.674 1e-166
Q6PJP81040 DNA cross-link repair 1A yes no 0.724 0.323 0.516 1e-102
Q9JIC31026 DNA cross-link repair 1A yes no 0.728 0.329 0.510 1e-102
Q5QJC4972 DNA cross-link repair 1A yes no 0.728 0.347 0.505 1e-102
Q10264560 DNA cross-link repair pro yes no 0.739 0.612 0.391 4e-65
Q86KS1 920 DNA cross-link repair 1 p yes no 0.743 0.375 0.384 8e-61
Q5QJC3 457 5' exonuclease Apollo OS= no no 0.616 0.625 0.358 8e-48
B0V2S2 571 5' exonuclease Apollo OS= no no 0.620 0.504 0.337 1e-44
D2H8V8 529 5' exonuclease Apollo OS= no no 0.648 0.568 0.314 1e-37
P30620661 DNA cross-link repair pro yes no 0.726 0.509 0.302 7e-37
>sp|Q38961|SNM1_ARATH DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1 Back     alignment and function desciption
 Score =  583 bits (1504), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 303/449 (67%), Positives = 352/449 (78%), Gaps = 28/449 (6%)

Query: 37  DDDEEEEEKEESFADDFYRCGTDWSCLLQTE-------RKLKQANLFDMWGLKSNS---- 85
           +DD EE E+EE FA DFY+ G+DWSCL++ E       +K+KQ+NLF +WGL+ NS    
Sbjct: 34  NDDVEENEEEEGFASDFYKAGSDWSCLVEDEETVSSSVKKMKQSNLFQIWGLQENSPDTT 93

Query: 86  -ESEANCLF--------SPPMKKLKASNGKSTATHLKKIVD--------RSCPFYKKIPG 128
            + +   LF        SP       S  K+T+   K+  D        R CPFYKK+PG
Sbjct: 94  KKMKQTDLFQSWGLQKPSPFTSPASNSAKKTTSALGKRRRDSSFSNDSPRPCPFYKKLPG 153

Query: 129 TPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPS 188
           TPFTVDAFRYG ++GCSAYFLTHFH DHY GL K WSHGPIYCS LT+RL+R+ L VNPS
Sbjct: 154 TPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRLSLSVNPS 213

Query: 189 YIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLL 248
            IHPLEL+ E+ I+G+KVTL+EANHCPGAALIHFRL DG CYLHTGDFRAS+ MQ++PLL
Sbjct: 214 SIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQMQTHPLL 273

Query: 249 VNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVF 308
            N RV+VLYLDTTYCNP+YKFPSKEDVL+YVVR+TK+ L+KQPKTL+VVG+YSIGKE V+
Sbjct: 274 FNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGKECVY 333

Query: 309 LAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLK 368
           LAI+KALGVKI+ANASRRR+LQSF W ++S NL T G  T LHVLPMSSLK E L ++LK
Sbjct: 334 LAIAKALGVKIFANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSLKVERLDEHLK 393

Query: 369 PYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQF 428
            Y  QY AVLAFRPTGWTYSE +G  LDLI+P SRG ITIYGVPYSEHSSFTELREFVQF
Sbjct: 394 IYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYSEHSSFTELREFVQF 453

Query: 429 LRPDKIIPTVNVWNAASREKMQSFFREWL 457
           LRPDKIIPTVN  NA +REKMQS FREWL
Sbjct: 454 LRPDKIIPTVNNGNAGTREKMQSCFREWL 482
May be required for repair of DNA lesions formed after exposure to oxidative stress.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6PJP8|DCR1A_HUMAN DNA cross-link repair 1A protein OS=Homo sapiens GN=DCLRE1A PE=1 SV=3 Back     alignment and function description
>sp|Q9JIC3|DCR1A_MOUSE DNA cross-link repair 1A protein OS=Mus musculus GN=Dclre1a PE=1 SV=2 Back     alignment and function description
>sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein OS=Gallus gallus GN=DCLRE1A PE=1 SV=1 Back     alignment and function description
>sp|Q10264|PSO2_SCHPO DNA cross-link repair protein pso2/snm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pso2 PE=3 SV=3 Back     alignment and function description
>sp|Q86KS1|DCR1_DICDI DNA cross-link repair 1 protein OS=Dictyostelium discoideum GN=dclre1 PE=3 SV=1 Back     alignment and function description
>sp|Q5QJC3|DCR1B_CHICK 5' exonuclease Apollo OS=Gallus gallus GN=DCLRE1B PE=2 SV=1 Back     alignment and function description
>sp|B0V2S2|DCR1B_DANRE 5' exonuclease Apollo OS=Danio rerio GN=dclre1b PE=2 SV=1 Back     alignment and function description
>sp|D2H8V8|DCR1B_AILME 5' exonuclease Apollo OS=Ailuropoda melanoleuca GN=DCLRE1B PE=3 SV=1 Back     alignment and function description
>sp|P30620|PSO2_YEAST DNA cross-link repair protein PSO2/SNM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSO2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
255543475493 DNA cross-link repair protein pso2/snm1, 0.963 0.906 0.669 1e-177
357508501511 DNA cross-link repair protein SNM1 [Medi 0.974 0.884 0.639 1e-174
356560410505 PREDICTED: DNA cross-link repair protein 0.924 0.849 0.649 1e-173
297814896483 hypothetical protein ARALYDRAFT_484438 [ 0.939 0.902 0.645 1e-166
224131352382 predicted protein [Populus trichocarpa] 0.765 0.929 0.788 1e-165
15231597484 DNA cross-link repair protein SNM1 [Arab 0.907 0.869 0.674 1e-164
222423539484 AT3G26680 [Arabidopsis thaliana] 0.907 0.869 0.674 1e-164
1495267484 orf12 [Arabidopsis thaliana] 0.907 0.869 0.674 1e-164
222628797517 hypothetical protein OsJ_14663 [Oryza sa 0.915 0.822 0.590 1e-152
115458180481 Os04g0401800 [Oryza sativa Japonica Grou 0.915 0.883 0.590 1e-151
>gi|255543475|ref|XP_002512800.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis] gi|223547811|gb|EEF49303.1| DNA cross-link repair protein pso2/snm1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 324/484 (66%), Positives = 378/484 (78%), Gaps = 37/484 (7%)

Query: 8   EFEYGDCESSGLLHDENGFPSFQDNDDDDDDDEEEE--------------EKEESFADDF 53
           E  YG+ +S+    +E     F D    +DDDE+E               E+EESFA DF
Sbjct: 11  EANYGNGDSND---NEWSLFMFDDEQLIEDDDEKENYEIETKDKETDDEEEEEESFAADF 67

Query: 54  YRCGTDWSCLL---------QTERKLKQANLFDMWGLKSNS-ESEANCLFSP---PMKKL 100
           YRCG+DWS LL           E+KLKQANL D+WGLK+N+ + +A  L S    P KKL
Sbjct: 68  YRCGSDWSSLLLDRGDTNNNNIEKKLKQANLLDVWGLKNNNPKPKALPLTSSSPSPFKKL 127

Query: 101 KASNG-----KSTATHL--KKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFH 153
           K  +      K    +L  K I  R CPFYKKIPGTPFTVDAFRYG I+ CSAYFLTHFH
Sbjct: 128 KIGSSSSSSIKPNYKNLIPKSIKPRVCPFYKKIPGTPFTVDAFRYGPIQNCSAYFLTHFH 187

Query: 154 YDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANH 213
            DHYGGL K WSHGPIYC+ LTARL+++CL VN S+IHPL+LNTE+ I+GV+VTLLEANH
Sbjct: 188 ADHYGGLTKGWSHGPIYCTQLTARLLKLCLYVNSSFIHPLDLNTEYAIEGVRVTLLEANH 247

Query: 214 CPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKE 273
           CPGAAL+HFRL +G CYLHTGDFRAS++MQSY LLVN +VN LYLDTTYCNPKYKFPSKE
Sbjct: 248 CPGAALLHFRLSNGLCYLHTGDFRASKVMQSYHLLVNQKVNALYLDTTYCNPKYKFPSKE 307

Query: 274 DVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFD 333
           DVLNYVVR+TK+ LK+QP+TL+VVGAYSIGKE V+L+ISKALGVKIYA+ASRR++L+SF 
Sbjct: 308 DVLNYVVRVTKDFLKQQPETLIVVGAYSIGKECVYLSISKALGVKIYASASRRQILESFG 367

Query: 334 WPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGN 393
           W +LS +LCTQ  DT LHVLP+SSL+ ETLKDYLK Y NQY AVLAFRPTGWTYSE VG 
Sbjct: 368 WSDLSRSLCTQPKDTPLHVLPISSLRVETLKDYLKKYINQYRAVLAFRPTGWTYSENVGK 427

Query: 394 QLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFF 453
           +LDLIRP+S+GN+TIYGVPYSEHSSFTEL+EFV+FL+PDKIIPTVNV N  +REKMQS F
Sbjct: 428 KLDLIRPISKGNVTIYGVPYSEHSSFTELKEFVEFLKPDKIIPTVNVGNPTNREKMQSHF 487

Query: 454 REWL 457
           REWL
Sbjct: 488 REWL 491

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357508501|ref|XP_003624539.1| DNA cross-link repair protein SNM1 [Medicago truncatula] gi|87241310|gb|ABD33168.1| DNA repair metallo-beta-lactamase [Medicago truncatula] gi|355499554|gb|AES80757.1| DNA cross-link repair protein SNM1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356560410|ref|XP_003548485.1| PREDICTED: DNA cross-link repair protein SNM1-like [Glycine max] Back     alignment and taxonomy information
>gi|297814896|ref|XP_002875331.1| hypothetical protein ARALYDRAFT_484438 [Arabidopsis lyrata subsp. lyrata] gi|297321169|gb|EFH51590.1| hypothetical protein ARALYDRAFT_484438 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224131352|ref|XP_002321063.1| predicted protein [Populus trichocarpa] gi|222861836|gb|EEE99378.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15231597|ref|NP_189302.1| DNA cross-link repair protein SNM1 [Arabidopsis thaliana] gi|30688447|ref|NP_850635.1| DNA cross-link repair protein SNM1 [Arabidopsis thaliana] gi|79313637|ref|NP_001030773.1| DNA cross-link repair protein SNM1 [Arabidopsis thaliana] gi|73621911|sp|Q38961.1|SNM1_ARATH RecName: Full=DNA cross-link repair protein SNM1; Short=AtSNM1 gi|1402886|emb|CAA66817.1| hypothetical protein [Arabidopsis thaliana] gi|11994302|dbj|BAB01732.1| unnamed protein product [Arabidopsis thaliana] gi|26449933|dbj|BAC42087.1| unknown protein [Arabidopsis thaliana] gi|28827378|gb|AAO50533.1| unknown protein [Arabidopsis thaliana] gi|332643675|gb|AEE77196.1| DNA cross-link repair protein SNM1 [Arabidopsis thaliana] gi|332643676|gb|AEE77197.1| DNA cross-link repair protein SNM1 [Arabidopsis thaliana] gi|332643677|gb|AEE77198.1| DNA cross-link repair protein SNM1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222423539|dbj|BAH19739.1| AT3G26680 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|1495267|emb|CAA66406.1| orf12 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222628797|gb|EEE60929.1| hypothetical protein OsJ_14663 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115458180|ref|NP_001052690.1| Os04g0401800 [Oryza sativa Japonica Group] gi|38345210|emb|CAD40784.2| OSJNBb0012E08.8 [Oryza sativa Japonica Group] gi|113564261|dbj|BAF14604.1| Os04g0401800 [Oryza sativa Japonica Group] gi|116309317|emb|CAH66404.1| OSIGBa0155K12.7 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
TAIR|locus:2090832484 SNM1 "SENSITIVE TO NITROGEN MU 0.840 0.805 0.709 5.3e-160
UNIPROTKB|I3LAK7956 DCLRE1A "Uncharacterized prote 0.762 0.370 0.495 6e-99
UNIPROTKB|F1S5H81045 DCLRE1A "Uncharacterized prote 0.765 0.339 0.490 2e-98
UNIPROTKB|I3LLR21034 DCLRE1A "Uncharacterized prote 0.765 0.343 0.490 2e-98
MGI|MGI:19300421026 Dclre1a "DNA cross-link repair 0.728 0.329 0.510 8.7e-98
UNIPROTKB|E2QZ291049 DCLRE1A "Uncharacterized prote 0.724 0.320 0.504 2.9e-97
UNIPROTKB|E1BN111051 DCLRE1A "Uncharacterized prote 0.765 0.337 0.498 8.4e-97
RGD|13061561026 Dclre1a "DNA cross-link repair 0.724 0.327 0.504 9.8e-97
ZFIN|ZDB-GENE-050522-124904 dclre1a "DNA cross-link repair 0.756 0.388 0.505 5.9e-96
UNIPROTKB|Q5QJC4972 DCLRE1A "DNA cross-link repair 0.836 0.399 0.462 3.3e-95
TAIR|locus:2090832 SNM1 "SENSITIVE TO NITROGEN MUSTARD 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1469 (522.2 bits), Expect = 5.3e-160, Sum P(2) = 5.3e-160
 Identities = 279/393 (70%), Positives = 320/393 (81%)

Query:    66 TERKLKQANLFDMWGLKSNSESEANCLFSPPMKKLKASNGKSTA-THLKKIVDRSCPFYK 124
             T +K+KQ +LF  WGL+  S   +    S   KK  ++ GK    +       R CPFYK
Sbjct:    92 TTKKMKQTDLFQSWGLQKPSPFTSPA--SNSAKKTTSALGKRRRDSSFSNDSPRPCPFYK 149

Query:   125 KIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLL 184
             K+PGTPFTVDAFRYG ++GCSAYFLTHFH DHY GL K WSHGPIYCS LT+RL+R+ L 
Sbjct:   150 KLPGTPFTVDAFRYGCVQGCSAYFLTHFHADHYIGLTKAWSHGPIYCSSLTSRLLRLSLS 209

Query:   185 VNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQS 244
             VNPS IHPLEL+ E+ I+G+KVTL+EANHCPGAALIHFRL DG CYLHTGDFRAS+ MQ+
Sbjct:   210 VNPSSIHPLELDVEYTINGIKVTLIEANHCPGAALIHFRLLDGTCYLHTGDFRASKQMQT 269

Query:   245 YPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGK 304
             +PLL N RV+VLYLDTTYCNP+YKFPSKEDVL+YVVR+TK+ L+KQPKTL+VVG+YSIGK
Sbjct:   270 HPLLFNQRVHVLYLDTTYCNPRYKFPSKEDVLSYVVRITKDFLRKQPKTLIVVGSYSIGK 329

Query:   305 ESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLK 364
             E V+LAI+KALGVKI+ANASRRR+LQSF W ++S NL T G  T LHVLPMSSLK E L 
Sbjct:   330 ECVYLAIAKALGVKIFANASRRRILQSFGWDDISKNLSTDGKATCLHVLPMSSLKVERLD 389

Query:   365 DYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELRE 424
             ++LK Y  QY AVLAFRPTGWTYSE +G  LDLI+P SRG ITIYGVPYSEHSSFTELRE
Sbjct:   390 EHLKIYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYSEHSSFTELRE 449

Query:   425 FVQFLRPDKIIPTVNVWNAASREKMQSFFREWL 457
             FVQFLRPDKIIPTVN  NA +REKMQS FREWL
Sbjct:   450 FVQFLRPDKIIPTVNNGNAGTREKMQSCFREWL 482
GO:0005634 "nucleus" evidence=ISM
GO:0016787 "hydrolase activity" evidence=IEA
GO:0006281 "DNA repair" evidence=IMP
UNIPROTKB|I3LAK7 DCLRE1A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1S5H8 DCLRE1A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LLR2 DCLRE1A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1930042 Dclre1a "DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ29 DCLRE1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BN11 DCLRE1A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1306156 Dclre1a "DNA cross-link repair 1A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-124 dclre1a "DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5QJC4 DCLRE1A "DNA cross-link repair 1A protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38961SNM1_ARATHNo assigned EC number0.67480.90730.8698yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.5__430__AT3G26680.2
annotation not avaliable (483 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
pfam07522107 pfam07522, DRMBL, DNA repair metallo-beta-lactamas 2e-42
COG1236427 COG1236, YSH1, Predicted exonuclease of the beta-l 1e-15
COG0595 555 COG0595, COG0595, mRNA degradation ribonucleases J 3e-11
COG1782637 COG1782, COG1782, Predicted metal-dependent RNase, 1e-10
smart00849177 smart00849, Lactamase_B, Metallo-beta-lactamase su 2e-10
TIGR03675630 TIGR03675, arCOG00543, arCOG00543 universal archae 5e-10
TIGR04122326 TIGR04122, Xnuc_lig_assoc, putative exonuclease, D 2e-08
pfam00753148 pfam00753, Lactamase_B, Metallo-beta-lactamase sup 3e-08
pfam12706197 pfam12706, Lactamase_B_2, Beta-lactamase superfami 4e-06
COG1235269 COG1235, PhnP, Metal-dependent hydrolases of the b 5e-06
COG0491252 COG0491, GloB, Zn-dependent hydrolases, including 6e-06
COG2220258 COG2220, COG2220, Predicted Zn-dependent hydrolase 2e-04
TIGR00649422 TIGR00649, MG423, conserved hypothetical protein 0.002
pfam12619145 pfam12619, MCM2_N, Mini-chromosome maintenance pro 0.003
>gnl|CDD|219448 pfam07522, DRMBL, DNA repair metallo-beta-lactamase Back     alignment and domain information 
 Score =  145 bits (369), Expect = 2e-42
 Identities = 61/106 (57%), Positives = 76/106 (71%), Gaps = 1/106 (0%)

Query: 335 PELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQ 394
           PEL   L T  + T +HV+PM  +++E L  YLK +   + +V+A RPTGWT+     N 
Sbjct: 1   PELLSVLTTDPSSTRIHVVPMGKIRYEALLSYLKAFKEHFDSVIAIRPTGWTFRPPKTNV 60

Query: 395 LDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNV 440
           LD I+P SRG ITIYGVPYSEHSSF+EL++FV FLRP KIIPTVNV
Sbjct: 61  LDRIKP-SRGKITIYGVPYSEHSSFSELKDFVSFLRPKKIIPTVNV 105

The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in pfam00753 and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair. Length = 107
>gnl|CDD|224157 COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|223668 COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>gnl|CDD|224696 COG1782, COG1782, Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|188365 TIGR03675, arCOG00543, arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>gnl|CDD|200373 TIGR04122, Xnuc_lig_assoc, putative exonuclease, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain Back     alignment and domain information
>gnl|CDD|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>gnl|CDD|225130 COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>gnl|CDD|233071 TIGR00649, MG423, conserved hypothetical protein Back     alignment and domain information
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 464
COG1782637 Predicted metal-dependent RNase, consists of a met 100.0
TIGR03675630 arCOG00543 arCOG00543 universal archaeal KH-domain 100.0
KOG1361481 consensus Predicted hydrolase involved in interstr 100.0
KOG1136501 consensus Predicted cleavage and polyadenylation s 100.0
COG1236427 YSH1 Predicted exonuclease of the beta-lactamase f 100.0
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 100.0
TIGR00649422 MG423 conserved hypothetical protein. Contains an 100.0
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta 100.0
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 99.9
KOG1135 764 consensus mRNA cleavage and polyadenylation factor 99.86
KOG1138 653 consensus Predicted cleavage and polyadenylation s 99.72
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 99.72
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 99.72
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 99.71
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 99.71
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 99.66
PF07522110 DRMBL: DNA repair metallo-beta-lactamase; InterPro 99.65
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.64
PRK02126334 ribonuclease Z; Provisional 99.61
PRK02113252 putative hydrolase; Provisional 99.6
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 99.6
PRK00685228 metal-dependent hydrolase; Provisional 99.55
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 99.54
PRK00055270 ribonuclease Z; Reviewed 99.5
PRK04286298 hypothetical protein; Provisional 99.49
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 99.44
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.3
PRK11921394 metallo-beta-lactamase/flavodoxin domain-containin 99.3
PRK05452479 anaerobic nitric oxide reductase flavorubredoxin; 99.24
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 99.2
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 99.1
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 99.09
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 99.09
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 99.08
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 99.05
PLN02469258 hydroxyacylglutathione hydrolase 98.99
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 98.97
PLN02398329 hydroxyacylglutathione hydrolase 98.93
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 98.91
PRK11539755 ComEC family competence protein; Provisional 98.9
PLN02962251 hydroxyacylglutathione hydrolase 98.89
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 98.83
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 98.79
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 98.7
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 98.67
PF0752143 RMMBL: RNA-metabolising metallo-beta-lactamase; In 98.66
KOG0813265 consensus Glyoxylase [General function prediction 98.56
PF10996126 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 T 98.5
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 98.12
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 97.99
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 97.9
KOG0814237 consensus Glyoxylase [General function prediction 97.52
KOG3798343 consensus Predicted Zn-dependent hydrolase (beta-l 96.8
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 96.1
COG2015 655 Alkyl sulfatase and related hydrolases [Secondary 94.97
KOG4736302 consensus Uncharacterized conserved protein [Funct 83.93
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-52  Score=417.68  Aligned_cols=344  Identities=22%  Similarity=0.326  Sum_probs=276.6

Q ss_pred             Ccccc---cCCceeEEcCCCCCCCCCC----ceEecCCCcCCCCCccEEEeCccchhhhcCccc---cCCCCcEEeCHHH
Q 012419          106 KSTAT---HLKKIVDRSCPFYKKIPGT----PFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGK---RWSHGPIYCSPLT  175 (464)
Q Consensus       106 ~~~~~---~~~~~~lidcG~~~~~~~~----~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~---~~~~~~Iy~s~~t  175 (464)
                      |+++.   ++..++|+|||......+.    -+.++.|+   ...+|||+|||+|.||+|-||.   .++.+||||+++|
T Consensus       193 GRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~---~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T~PT  269 (637)
T COG1782         193 GRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQ---PDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCTPPT  269 (637)
T ss_pred             cceeEEEecCCceEEEeccccCCCCccccCccccccccc---ccccceEEEeecccccccchhhhhhcCCCCCeeeCCCc
Confidence            44554   8999999999996644321    12233332   1369999999999999999996   4578999999999


Q ss_pred             HHHHHHhhcc-----------C----------CCceEEcCCCCEEEE-CCEEEEEEEcCCCCCceEEEEEeeCCc-EEEE
Q 012419          176 ARLVRMCLLV-----------N----------PSYIHPLELNTEHVI-DGVKVTLLEANHCPGAALIHFRLQDGQ-CYLH  232 (464)
Q Consensus       176 ~~~l~~~~~~-----------~----------~~~~~~v~~~~~~~i-~~~~v~~~~agH~~gs~~~~i~~~~g~-~ily  232 (464)
                      ..++-.+...           .          -....++++|+.-.| .++++|++.|||+.||++.++...+|. +|+|
T Consensus       270 RDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIGdGlyNi~y  349 (637)
T COG1782         270 RDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGLYNIVY  349 (637)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEecCCceeEEE
Confidence            9876443210           0          134678999999988 789999999999999999999887764 8999


Q ss_pred             ECCCCCCccccccccc-cCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccHHHHHHHH
Q 012419          233 TGDFRASRLMQSYPLL-VNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAI  311 (464)
Q Consensus       233 tGD~~~~~~~~~~~~l-~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr~qell~l  311 (464)
                      |||+.+.+..+..++- ..++++.||+|+||+.+....|++++++++|++.|++++++||+  ||||+|++||.||++.+
T Consensus       350 TGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~d~q~~R~eaE~~L~~vi~~t~~rGGK--vLIP~fAVGR~QEvM~V  427 (637)
T COG1782         350 TGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKRGGK--VLIPVFAVGRSQEVMIV  427 (637)
T ss_pred             ecccccceeeecChhhccCcchhheeeeeccCCccccCccHHHHHHHHHHHHHHHHhcCCe--EEEEeeeccccceehhH
Confidence            9999999887766542 25899999999999977777799999999999999999999998  99999999999999988


Q ss_pred             HHHc-------CCeEEEcccHHHHHHh-------------------cCCCccccCccc-----------cCCCceEEEEe
Q 012419          312 SKAL-------GVKIYANASRRRVLQS-------------------FDWPELSGNLCT-----------QGNDTLLHVLP  354 (464)
Q Consensus       312 ~~~~-------~~~I~v~~~~~~i~~~-------------------~~~~~~~~~~~~-----------~~~~~~V~v~~  354 (464)
                      ++++       .+|||+|+++.+....                   =.+|++++.+..           +..+|+|++++
T Consensus       428 Lee~mr~g~ipe~PVYlDGMI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~se~f~~V~~~~~r~~i~~~~ep~iIlaT  507 (637)
T COG1782         428 LEEAMRKGLIPEVPVYLDGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFKRVEGSDERQEIIESDEPAIILAT  507 (637)
T ss_pred             HHHHHhcCCCCCCceeeeeeeeehhhhhhcCHHhhhHHHHHHHhcCCCCCccccceeecCChhHHHHHhcCCCCeEEEec
Confidence            8764       4799999986432211                   124555543321           24689999999


Q ss_pred             CCCCChhhHHHHHhhhCCCCCCEEEEeeccccccCCccccccccc-----cCCCCC-------EEEEeE-eccCCCCHHH
Q 012419          355 MSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIR-----PLSRGN-------ITIYGV-PYSEHSSFTE  421 (464)
Q Consensus       355 ~~~l~~g~~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~l~~~~-----~~~~g~-------~~i~~i-~~S~Had~~e  421 (464)
                      +|||++|++.+||+.++++|+|.++|  .|||+++|.||+++.-.     +...|+       +.+..+ .||+|||+.|
T Consensus       508 SGMlnGGPvveyfk~lA~DprntliF--VgYQAeGTLGRriq~G~kEipi~~~~G~te~i~inMeV~tieGFSGHsdrrq  585 (637)
T COG1782         508 SGMLNGGPVVEYFKHLAPDPKNTLIF--VGYQAEGTLGRRIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHSDRRQ  585 (637)
T ss_pred             cccccCCcHHHHHHHhCCCCCceEEE--EEeccCcchhhhhhcCceecccccCCCCeEEEEEEEEEEEecCcCCCccHHH
Confidence            99999999999999999999999999  99999999999986422     122342       234445 5999999999


Q ss_pred             HHHHHHhc--CCCeEEEecccCCHHHHHHHHHHHHHHHh
Q 012419          422 LREFVQFL--RPDKIIPTVNVWNAASREKMQSFFREWLS  458 (464)
Q Consensus       422 L~~~v~~l--~Pk~ViP~~~hg~~~~~~~l~~~l~~~l~  458 (464)
                      |.+||+.+  +|++|+  ++|||+.++..|++.+.+-.+
T Consensus       586 L~~yvr~~~PkP~ki~--~~HGe~sk~~~lA~si~~~~~  622 (637)
T COG1782         586 LMKYVRRMNPKPEKIL--LNHGEPSKCLDLASSIRRKFK  622 (637)
T ss_pred             HHHHHHhcCCCCceeE--eecCChHHHHHHHHHHHhhcc
Confidence            99999999  568999  899999999999999887543

>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG0814 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG4736 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
4b87_A367 Crystal Structure Of Human Dna Cross-Link Repair 1a 1e-102
3zdk_A336 Crystal Structure Of Human 5' Exonuclease Apollo Le 9e-37
2ycb_A636 Structure Of The Archaeal Beta-Casp Protein With N- 3e-10
2xr1_A640 Dimeric Archaeal Cleavage And Polyadenylation Speci 3e-09
3af5_A651 The Crystal Structure Of An Archaeal Cpsf Subunit, 5e-06
>pdb|4B87|A Chain A, Crystal Structure Of Human Dna Cross-Link Repair 1a Length = 367 Back     alignment and structure 
Iteration: 1

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/339 (51%), Positives = 239/339 (70%), Gaps = 3/339 (0%)
Query: 118 RSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTAR 177
           ++CPFYKKIPGT FTVDAF+YG ++GC+AYFLTHFH DHY GL K ++  P+YCS +T  
Sbjct: 26  KTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSKHFTF-PVYCSEITGN 84
Query: 178 LVRMCLLVNPSYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFR 237
           L++  L V   YIHPL L+TE +++GVKV LL+ANHCPGA +I F L +G   LHTGDFR
Sbjct: 85  LLKNKLHVQEQYIHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFR 144
Query: 238 ASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVV 297
           A   M+   LL + +V++LYLDTTYC+P+Y FPS+++V+ + +      +   P  LVV 
Sbjct: 145 ADPSMER-SLLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHALVVC 203
Query: 298 GAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSS 357
           G YSIGKE VFLAI+  LG K+  +  + + LQ  + PE++  + T    +L+H+LPM  
Sbjct: 204 GTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEINSLITTDMCSSLVHLLPMMQ 263
Query: 358 LKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHS 417
           + F+ L+ +LK  G +Y  +LAFRPTGWT+S       D+I P ++GNI+IYG+PYSEHS
Sbjct: 264 INFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKFTRIADVI-PQTKGNISIYGIPYSEHS 322
Query: 418 SFTELREFVQFLRPDKIIPTVNVWNAASREKMQSFFREW 456
           S+ E++ FVQ+L+P KIIPTVNV    SR  M+ +FREW
Sbjct: 323 SYLEMKRFVQWLKPQKIIPTVNVGTWKSRSTMEKYFREW 361
>pdb|3ZDK|A Chain A, Crystal Structure Of Human 5' Exonuclease Apollo Length = 336 Back     alignment and structure
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With N-Terminal Kh Domains From Methanothermobacter Thermautotrophicus Length = 636 Back     alignment and structure
>pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity Factor With N-Terminal Kh Domains (Kh-Cpsf) From Methanosarcina Mazei Length = 640 Back     alignment and structure
>pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404 From Pyrococcus Horikoshii Length = 651 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
2ycb_A636 Beta-CAsp RNAse, cleavage and polyadenylation spec 8e-15
2xr1_A640 Cleavage and polyadenylation specificity factor 1 1e-14
2i7t_A459 Cleavage and polyadenylation specificity factor 73 6e-14
3af5_A651 Putative uncharacterized protein PH1404; archaeal 8e-13
3iek_A431 Ribonuclease TTHA0252; metallo beta lactamase fold 1e-12
2az4_A429 Hypothetical protein EF2904; structural genomics, 2e-10
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 4e-09
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 8e-09
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 2e-08
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 3e-07
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 5e-07
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 7e-07
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 6e-06
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 6e-06
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 6e-06
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 7e-06
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 1e-05
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 2e-05
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 2e-05
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 3e-05
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 3e-05
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 4e-05
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 4e-05
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 5e-05
3rpc_A264 Possible metal-dependent hydrolase; structural gen 8e-05
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 2e-04
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 3e-04
3adr_A261 Putative uncharacterized protein ST1585; quorum se 5e-04
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 6e-04
1ztc_A221 Hypothetical protein TM0894; structural genomics, 7e-04
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 8e-04
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 636 Back     alignment and structure
 Score = 75.8 bits (187), Expect = 8e-15
 Identities = 48/214 (22%), Positives = 86/214 (40%), Gaps = 42/214 (19%)

Query: 118 RSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGG---LGKRWSHGPIYCSPL 174
            S P+      T  ++DA             +TH H DH G    L      GP+YC+  
Sbjct: 220 NSYPYLNVPEFTLDSLDAV-----------IITHAHLDHSGFLPYLYHYGYDGPVYCTAP 268

Query: 175 TARLVRMCLL----------VNPSY-----------IHPLELNTEHVI-DGVKVTLLEAN 212
           T  L+ +  L              +              L+      I   +++TL  A 
Sbjct: 269 TRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAG 328

Query: 213 HCPGAALIHFRLQDGQC-YLHTGDF--RASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKF 269
           H  G+A+ H  + DGQ   ++TGDF    SRL+++       R+  L +++TY   +   
Sbjct: 329 HILGSAMAHLHIGDGQHNMVYTGDFKYEQSRLLEA-AANRFPRIETLVMESTYGGHEDVQ 387

Query: 270 PSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIG 303
           PS+      +V+   + L++  K  +++  +++G
Sbjct: 388 PSRNRAEKELVKTIYSTLRRGGK--ILIPVFAVG 419
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Length = 431 Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Length = 429 Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Length = 555 Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Length = 562 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258 Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Length = 379 Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Length = 207 Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Length = 270 Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Length = 269 Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Length = 303 Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Length = 232 Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Length = 265 Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Length = 228 Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Length = 276 Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Length = 303 Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Length = 219 Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Length = 263 Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Length = 223 Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Length = 264 Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Length = 227 Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210 Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Length = 261 Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Length = 289 Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Length = 221 Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Length = 317 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
4b87_A367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 100.0
3iek_A431 Ribonuclease TTHA0252; metallo beta lactamase fold 100.0
2i7t_A459 Cleavage and polyadenylation specificity factor 73 100.0
3zdk_A336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 100.0
3af5_A651 Putative uncharacterized protein PH1404; archaeal 100.0
2xr1_A640 Cleavage and polyadenylation specificity factor 1 100.0
2ycb_A636 Beta-CAsp RNAse, cleavage and polyadenylation spec 100.0
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 100.0
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 100.0
2az4_A429 Hypothetical protein EF2904; structural genomics, 100.0
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 99.97
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 99.79
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 99.79
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 99.77
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 99.75
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 99.75
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 99.74
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 99.74
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 99.65
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 99.64
3kl7_A235 Putative metal-dependent hydrolase; structural gen 99.63
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 99.59
3rpc_A264 Possible metal-dependent hydrolase; structural gen 99.56
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 99.41
1e5d_A402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 99.38
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 99.38
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 99.38
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.37
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like doma 99.34
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductas 99.33
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 99.31
2bib_A 547 CBPE, teichoic acid phosphorylcholine esterase/ ch 99.3
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 99.28
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 99.27
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 99.27
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 99.24
3esh_A280 Protein similar to metal-dependent hydrolase; stru 99.24
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.23
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 99.23
2q9u_A414 A-type flavoprotein; flavodoxin like, beta lactama 99.23
4efz_A298 Metallo-beta-lactamase family protein; structural 99.22
4dik_A410 Flavoprotein; TM0755, electron transport, DI-iron 99.21
1ztc_A221 Hypothetical protein TM0894; structural genomics, 99.2
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 99.19
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 99.17
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 99.14
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 99.14
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 99.12
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 99.1
3tp9_A474 Beta-lactamase and rhodanese domain protein; struc 99.1
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 99.1
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 99.09
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 99.09
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 99.09
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 99.09
3r2u_A466 Metallo-beta-lactamase family protein; structural 99.08
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 99.06
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 98.99
1xm8_A254 Glyoxalase II; structural genomics, protein struct 98.98
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 98.98
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 98.96
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 98.95
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 98.93
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 98.9
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 98.85
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 98.74
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 98.73
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 97.99
2p97_A201 Hypothetical protein; putative metal-dependent hyd 98.44
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 98.26
3h3e_A267 Uncharacterized protein TM1679; structural genomic 97.23
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1e-54  Score=444.18  Aligned_cols=340  Identities=51%  Similarity=0.947  Sum_probs=299.3

Q ss_pred             EcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCccccCCCCcEEeCHHHHHHHHHhhccCCCceEEcCCCC
Q 012419          118 RSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKRWSHGPIYCSPLTARLVRMCLLVNPSYIHPLELNT  197 (464)
Q Consensus       118 idcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~~~~~~Iy~s~~t~~~l~~~~~~~~~~~~~v~~~~  197 (464)
                      ..|++.+..+|.++.||.|++..+.+||+|||||+|.||++|++. ..+++||+++.|.++++..++.....+++++.++
T Consensus        26 ~~~p~~~~~pG~~ilVD~f~~~~~~~IdaI~lTH~H~DHiggl~~-~~~~pIy~s~~t~~ll~~~l~~~~~~~~~l~~g~  104 (367)
T 4b87_A           26 KTCPFYKKIPGTGFTVDAFQYGVVEGCTAYFLTHFHSDHYAGLSK-HFTFPVYCSEITGNLLKNKLHVQEQYIHPLPLDT  104 (367)
T ss_dssp             CCCCGGGBCTTSSEEESCCSSSSCTTCCEEECCCCCHHHHTTCST-TCCSCEEECHHHHHHHHHHSCCCGGGEEECCBTS
T ss_pred             CCCceEEEECCCeEEEeCCCcCCccCCcEEEECcChHHHhCCccc-ccCCcEEECHHHHHHHHHHhccccceEEEeCCCC
Confidence            678888878898999999998778899999999999999999995 4578999999999999887776556789999999


Q ss_pred             EEEECCEEEEEEEcCCCCCceEEEEEeeCCcEEEEECCCCCCccccccccccCCCccEEEEeCCCCCCCCCCCCHHHHHH
Q 012419          198 EHVIDGVKVTLLEANHCPGAALIHFRLQDGQCYLHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSKEDVLN  277 (464)
Q Consensus       198 ~~~i~~~~v~~~~agH~~gs~~~~i~~~~g~~ilytGD~~~~~~~~~~~~l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~  277 (464)
                      ++.+++++|+++++||++|+++|+|+.++|++++||||++..+.... +.+...++|+||+||||+++.+.+|++++..+
T Consensus       105 ~~~ig~~~v~~~~agH~~gs~~~~i~~~~g~~il~tGD~~~~~~~~~-~~l~~~~~D~Li~EsTy~~~~~~~ps~~~~~~  183 (367)
T 4b87_A          105 ECIVNGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSMER-SLLADQKVHMLYLDTTYCSPEYTFPSQQEVIR  183 (367)
T ss_dssp             CEEETTEEEEEEECSSSTTCEEEEEECTTSCEEEECCSCCCCGGGGG-SGGGTSCCCEEEECCTTCSTTCCCCCHHHHHH
T ss_pred             EEEECCEEEEEEeCCCcCCcEEEEEEcCCCcEEEEecCcccCcccch-hhhccCCCCEEEEecccCCCCCCCCCHHHHHH
Confidence            99999999999999999999999999767778999999999887653 44444689999999999998888899999999


Q ss_pred             HHHHHHHHHHHhCCCeEEEEecccccHHHHHHHHHHHcCCeEEEcccHHHHHHhcCCCccccCccccCCCceEEEEeCCC
Q 012419          278 YVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYANASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSS  357 (464)
Q Consensus       278 ~l~~~i~~~l~~~~~~~vli~~~s~Gr~qell~l~~~~~~~I~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~v~~~~~  357 (464)
                      ++++.+.+.++.+++.+|++++|++||+|+++++++++|+||++++.++++++.++++++...+++++.++.|++++...
T Consensus       184 ~~~~~i~~~~~~~g~~~v~~~a~~igr~q~ll~ia~~~g~ki~v~~~~~~il~~l~~~~~~~~~t~d~~~~~vh~~~~~~  263 (367)
T 4b87_A          184 FAINTAFEAVTLNPHALVVCGTYSIGKEKVFLAIADVLGSKVGMSQEKYKTLQCLNIPEINSLITTDMCSSLVHLLPMMQ  263 (367)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEESSSCCHHHHHHHHHHTTCCEECCHHHHHHHHTTCCTTHHHHEESCGGGCSEEEEEGGG
T ss_pred             HHHHHHHHHHHhCCCeEEEEccchhHHHHHHHHHHHHhCCEEEEeHHHHHHHHhcCCchhhhhcccCCccceEEEeecCc
Confidence            89988888888888888889999999999999999999999999999999999999988777788888899999999999


Q ss_pred             CChhhHHHHHhhhCCCCCCEEEEeeccccccCCccccccccccCCCCCEEEEeEeccCCCCHHHHHHHHHhcCCCeEEEe
Q 012419          358 LKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPT  437 (464)
Q Consensus       358 l~~g~~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~l~~~~~~~~g~~~i~~i~~S~Had~~eL~~~v~~l~Pk~ViP~  437 (464)
                      ++.+.+..|++++.++++.++.|+||||...... ..+..+.|..++++.+|.+|||+|||+.||++||+.++|++||||
T Consensus       264 ~~~~~l~~~~~~~~~~~~~~v~~~ptgw~~~~~~-~~~~~~~~~~~~~~~~~~vpySeHss~~EL~~fv~~l~p~~iipt  342 (367)
T 4b87_A          264 INFKGLQSHLKKCGGKYNQILAFRPTGWTHSNKF-TRIADVIPQTKGNISIYGIPYSEHSSYLEMKRFVQWLKPQKIIPT  342 (367)
T ss_dssp             CSHHHHHHHHHSGGGCCCEEEEEEECC-----------CCCCCEEETTEEEEEECCCSSCCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCHHHHHHHHHHhhcccccEEEEcCcccccCCCC-CcccccccccCCceEEEEEeccCCCCHHHHHHHHHhcCCCeEECe
Confidence            9999999999999999999999999999876432 123334566678899999999999999999999999999999999


Q ss_pred             cccCCHHHHHHHHHHHHHHHhhh
Q 012419          438 VNVWNAASREKMQSFFREWLSCK  460 (464)
Q Consensus       438 ~~hg~~~~~~~l~~~l~~~l~~~  460 (464)
                      |+-|+++++++|+++|++|..|-
T Consensus       343 v~~~~~~~~~~m~~~~~~w~~~~  365 (367)
T 4b87_A          343 VNVGTWKSRSTMEKYFREWKLEA  365 (367)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999874
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 464
d2i7ta1451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 8e-23
d2dkfa1431 d.157.1.10 (A:1-431) Putative RNA-degradation prot 5e-13
d2az4a1183 d.157.1.10 (A:56-238) Hypothetical protein EF2904 1e-12
d2i7xa1 514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 6e-11
d1xtoa_304 d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, P 0.003
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage and polyadenylation specificity factor subunit 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.3 bits (243), Expect = 8e-23
 Identities = 39/362 (10%), Positives = 96/362 (26%), Gaps = 60/362 (16%)

Query: 136 FRYGSIKGCSAYFLTHFHYDHYGGL----GKRWSHGPIYCSPLTARLVRMCLLVNP---- 187
                        ++HFH DH G L     K    G  + +  T  + R  L        
Sbjct: 48  IDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSN 107

Query: 188 -----------------SYIHPLELNTEHVIDGVKVTLLEANHCPGAALIHFRLQDGQCY 230
                              I  +  +    + G+K     A H  GAA+    +   +  
Sbjct: 108 ISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLL 167

Query: 231 LHTGDFRASRLMQSYPLLVNHRVNVLYLDTTYCNPKYKFPSK------------------ 272
                 R          + N + ++L +++TY    ++   +                  
Sbjct: 168 YTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGR 227

Query: 273 -----------EDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKESVFLAISKALGVKIYA 321
                      +++L  +    +N  +     +    + +    +V+     A+  KI  
Sbjct: 228 GLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRK 287

Query: 322 NASRRRVLQSFDWPELSGNLCTQGNDTLLHVLPMSSLKFETLKDYLKPYGNQYAAVL--- 378
             +            L            + +     ++    ++  + +       +   
Sbjct: 288 QININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIA 347

Query: 379 ---AFRPTGWTYSETVGNQLDLIRPLSRGNITIYGVPYSEHSSFTELREFVQFLRPDKII 435
                                +        +++  + +S H+ + +  EF++ L+P  +I
Sbjct: 348 GYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVI 407

Query: 436 PT 437
             
Sbjct: 408 LV 409
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
d2i7xa1514 Cleavage factor two protein 2, CFT2 {Baker's yeast 100.0
d2dkfa1431 Putative RNA-degradation protein TTHA0252 {Thermus 100.0
d2i7ta1451 Cleavage and polyadenylation specificity factor su 100.0
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.82
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 99.78
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 99.62
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 99.58
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 99.44
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 99.32
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 99.24
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 99.19
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 99.13
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 99.12
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 99.1
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 99.1
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 99.05
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 99.02
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 99.0
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 98.95
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.88
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.85
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 98.8
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 98.77
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 98.77
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.77
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 98.72
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 98.63
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 98.63
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 98.54
d2cfua2505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 98.37
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 96.69
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: beta-CASP RNA-metabolising hydrolases
domain: Cleavage factor two protein 2, CFT2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.1e-43  Score=370.67  Aligned_cols=334  Identities=11%  Similarity=0.063  Sum_probs=247.9

Q ss_pred             cCCceeEEcCCCCCCCCCCceEecCCCcCCCCCccEEEeCccchhhhcCcccc--------CCCCcEEeCHHHHHHHHHh
Q 012419          111 HLKKIVDRSCPFYKKIPGTPFTVDAFRYGSIKGCSAYFLTHFHYDHYGGLGKR--------WSHGPIYCSPLTARLVRMC  182 (464)
Q Consensus       111 ~~~~~~lidcG~~~~~~~~~~~id~f~~~~i~~id~I~iTH~H~DHiggL~~~--------~~~~~Iy~s~~t~~~l~~~  182 (464)
                      .++..+|+|||...........++++. ..+.+||+|||||+|.||+|+||.+        ++++|||+|++|+++++..
T Consensus        22 ~~~~~iLlDcG~~~~~~~~~~~~~~~~-~~~~~IdaillTH~H~DHiGalP~L~~~~~~~~~~~~pIy~T~~T~~l~~~~  100 (514)
T d2i7xa1          22 FDNVTLLIDPGWNPSKVSYEQCIKYWE-KVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPVINLGRVS  100 (514)
T ss_dssp             ETTEEEEECCCCCTTTSCHHHHHHHHH-TTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHHHHHHHHH
T ss_pred             ECCeEEEEECCCCcCccchhhhhhhhh-cCcccCCEEEECCCChHHHCchHHHHHhcccccCCCcCEEeCHHHHHHHHHH
Confidence            678899999998553332111122221 2347899999999999999999974        3578999999999987654


Q ss_pred             hcc------------CC-----------CceEEcCCCCEEEEC----CEEEEEEEcCCCCCceEEEEEeeCCcEEEEECC
Q 012419          183 LLV------------NP-----------SYIHPLELNTEHVID----GVKVTLLEANHCPGAALIHFRLQDGQCYLHTGD  235 (464)
Q Consensus       183 ~~~------------~~-----------~~~~~v~~~~~~~i~----~~~v~~~~agH~~gs~~~~i~~~~g~~ilytGD  235 (464)
                      +..            .+           .++.++++++++.++    +++++++++||++||++|.|+.+ +.+|+||||
T Consensus       101 l~d~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~y~e~~~i~~~~~~~~~~~~~aGHilGsa~~~I~~~-~~~IvytGD  179 (514)
T d2i7xa1         101 TIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTY-SEKLVYAKR  179 (514)
T ss_dssp             HHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSSTTCEEEEEECS-SCEEEECSS
T ss_pred             HHHHHHHhhhhcccccCCCCHHHHHHHHHhcccCCCCCeEEecCCcccEEEEEccCCCCCCceEEEEEEC-CeEEEEEec
Confidence            320            00           257889999999995    69999999999999999999985 459999999


Q ss_pred             CCCCcccccccc---------ccCCCccEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecccccHHH
Q 012419          236 FRASRLMQSYPL---------LVNHRVNVLYLDTTYCNPKYKFPSKEDVLNYVVRLTKNCLKKQPKTLVVVGAYSIGKES  306 (464)
Q Consensus       236 ~~~~~~~~~~~~---------l~~~~~DlLi~EsT~~~~~~~~p~~~~~~~~l~~~i~~~l~~~~~~~vli~~~s~Gr~q  306 (464)
                      ++...+..+...         ......|.+++++||+....  +++.+..+.+.+.+.++++++|+  |+||+|++||.|
T Consensus       180 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lli~~t~~~~~~--~~~~~~~~~l~~~i~~~~~~gG~--VlIP~fa~gR~Q  255 (514)
T d2i7xa1         180 WNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSS--QPFKKRSKIFKDTLKKGLSSDGS--VIIPVDMSGKFL  255 (514)
T ss_dssp             CCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCS--SCHHHHHHHHHHHHHHHTSTTCE--EEEEECTTTHHH
T ss_pred             cCCCCCccCCCccccccccccccccCCCEEEEEcCCCCCCC--CChHHHHHHHHHHHHHHHhCCCE--EEEEEcCchHHH
Confidence            998766543211         11235667778888877543  77888899999999999998874  999999999999


Q ss_pred             HHHHHHHHc-----------CCeEEEcccH----HHHHHhcC-----------------CCccccCc---c-----ccCC
Q 012419          307 VFLAISKAL-----------GVKIYANASR----RRVLQSFD-----------------WPELSGNL---C-----TQGN  346 (464)
Q Consensus       307 ell~l~~~~-----------~~~I~v~~~~----~~i~~~~~-----------------~~~~~~~~---~-----~~~~  346 (464)
                      |++.++.++           ++|||+++..    .++++.+.                 .|+..+.+   .     .+..
T Consensus       256 Eil~~l~~~~~~~~~~~~~~~~pI~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~pf~~~~~~~i~~~~~l~~~~  335 (514)
T d2i7xa1         256 DLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNTSPFEIGSRIKIIAPNELSKYP  335 (514)
T ss_dssp             HHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHSSSSCCTTCCTTTEEECCGGGGGGCC
T ss_pred             HHHHHHHHHHHHHHhhccCCCceEEEEChHHHHHHHHHHHhHhhcCHHHHHHHhhhcCCCchhccCceeccCHHHHHhcc
Confidence            998877653           5799999853    23333221                 01111111   1     1235


Q ss_pred             CceEEEEeCCCCChhhHHHHHhhhCCCCCCEEEEeeccccccCCcccccccccc--------------------------
Q 012419          347 DTLLHVLPMSSLKFETLKDYLKPYGNQYAAVLAFRPTGWTYSETVGNQLDLIRP--------------------------  400 (464)
Q Consensus       347 ~~~V~v~~~~~l~~g~~~~~l~~~~~~~~~~i~~~~tG~~~~~~~g~~l~~~~~--------------------------  400 (464)
                      +++|++++++|   |++..++++|+++++|.|+|...||+.+++.++.+.....                          
T Consensus       336 ~p~VIiat~~~---G~~~~~l~~~a~d~~n~Vi~t~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  412 (514)
T d2i7xa1         336 GSKICFVSEVG---ALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTI  412 (514)
T ss_dssp             SCEEEEEESCH---HHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTCC--------CCCCEECCEEEEEEEE
T ss_pred             CCcEEEEcCCC---chHHHHHHHHhcCCCCEEEEecCCCcccccHHHHHhhhhhhccccccccccccccccCcceeeccc
Confidence            78999999875   7888999999999999999955599998887754421000                          


Q ss_pred             ------------------------CC--------CCCEEEEeEeccCCCCHHHHHHHHHhcCCCeEEEecccCCHHHHHH
Q 012419          401 ------------------------LS--------RGNITIYGVPYSEHSSFTELREFVQFLRPDKIIPTVNVWNAASREK  448 (464)
Q Consensus       401 ------------------------~~--------~g~~~i~~i~~S~Had~~eL~~~v~~l~Pk~ViP~~~hg~~~~~~~  448 (464)
                                              ..        .-++++..++||+|||++||++|++.++|++||  ++||+++.+++
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~i~~SgHad~~el~~~~~~~~P~~vv--lvHGe~~~~~~  490 (514)
T d2i7xa1         413 KEEPLSKEETNFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIV--LSAPKQIQNEE  490 (514)
T ss_dssp             EEEESCSCCCCCSCCGGGSCSSCCEEEEEEEEEEEECSEEEECCCCCSCCHHHHHHHGGGSCCSEEE--ECSCGGGSCHH
T ss_pred             ccccccccccCcccccccccccccceeecccceEEEEEEEEEEEeeecCCHHHHHHHHHhhCCCEEE--EeCCCHHHHHH
Confidence                                    00        002345667899999999999999999999999  67999999998


Q ss_pred             HHHHHHH
Q 012419          449 MQSFFRE  455 (464)
Q Consensus       449 l~~~l~~  455 (464)
                      |++.+++
T Consensus       491 ~a~~l~~  497 (514)
T d2i7xa1         491 ITAKLIK  497 (514)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887765
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure