Citrus Sinensis ID: 012442

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MEVMDESPDFVIKNKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM
ccccccccccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccc
cccccccccEEEHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHccccccc
mevmdespdfviknkiipsssstttsptshnphrptrprfpthldapyissSARIICEILAHASSDDIESALactgiiptpdLVHEVLQlsydspssavdffrwagrgqrlspyAWNLMVDVLGKNGRFEQMWNAVRVMkedgvlslptfASIFDsycgagkydeAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKkivdpdgdsFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMkgencfptlKFFSNALDILVKLNDSTHAVQLWDIMMVFhgafpdsltyNMIFECLIKNKRVHEVEKFFHEMIknewqptplNCATAITMlldadepeIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM
mevmdespdfviknkiipsssstttsptshnphrptrprfptHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMiknewqptPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKafynesrsmrdiFDSLERRCKTSQM
MEVMDESPDFVIKNKIIpsssstttsptsHNphrptrprfpthLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM
********************************************DAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNE********************
***MDESPDFVIKNKIIPSSSSTT*****************THLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT***
********DFVIKNKIIPS****************TRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM
****DESPDFVIKNKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRC*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEVMDESPDFVIKNKIIPSSSSTTTSPTSHNPHRPTRPRFPTHLDAPYISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKTSQM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
Q9FVX2517 Pentatricopeptide repeat- yes no 0.848 0.760 0.256 5e-34
Q9C9A2510 Pentatricopeptide repeat- no no 0.887 0.805 0.265 6e-32
Q9LZP3599 Pentatricopeptide repeat- no no 0.866 0.669 0.225 5e-27
Q3EAF8599 Pentatricopeptide repeat- no no 0.866 0.669 0.225 2e-26
Q9LEQ7598 Pentatricopeptide repeat- no no 0.866 0.670 0.225 2e-26
Q9M8W9508 Pentatricopeptide repeat- no no 0.779 0.710 0.267 3e-26
Q9LUJ4562 Pentatricopeptide repeat- no no 0.671 0.553 0.273 3e-25
Q9LN22537 Pentatricopeptide repeat- no no 0.552 0.476 0.280 3e-24
Q9SSR6523 Pentatricopeptide repeat- no no 0.794 0.703 0.246 5e-22
Q3EDF8598 Pentatricopeptide repeat- no no 0.684 0.530 0.250 1e-21
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 Back     alignment and function desciption
 Score =  145 bits (367), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 204/433 (47%), Gaps = 40/433 (9%)

Query: 49  ISSSARIICEILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRG 108
           ++  A+ I ++L  +    ++SAL  +G+  + ++V +VL    ++      FF+W+ + 
Sbjct: 68  VADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQ 127

Query: 109 QRL--SPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEA 166
           +    S  A+++M++   K  +++ MW+ +  M++  +L++ TF  +   Y  A K DEA
Sbjct: 128 RHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKYARAQKVDEA 187

Query: 167 VMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEG 226
           + +F+VM  + +  ++VA N LLSA+C+ +N   +A E    ++    PD  +++ILLEG
Sbjct: 188 IYAFNVMEKYDLPPNLVAFNGLLSALCKSKN-VRKAQEVFENMRDRFTPDSKTYSILLEG 246

Query: 227 WEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCF 286
           W KE N+ +A + F EM++    +P+ ++ Y   +  L +  +VDEAL  +R M    C 
Sbjct: 247 WGKEPNLPKAREVFREMIDA-GCHPD-IVTYSIMVDILCKAGRVDEALGIVRSMDPSICK 304

Query: 287 PTLKFFS-------------NALDILVKLNDS----------------THAVQLWDIMMV 317
           PT   +S              A+D  +++  S                  A ++ ++  V
Sbjct: 305 PTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRV 364

Query: 318 F-----HGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLD 372
                  G  P+S + N+I   LI+     E    F +MIK   +P        I M  +
Sbjct: 365 LKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK-VCEPDADTYTMVIKMFCE 423

Query: 373 ADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVT 432
             E E A ++W Y+ + G+ P   + + L+ GL             EEM+   I    VT
Sbjct: 424 KKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVT 483

Query: 433 MHKLKKAFYNESR 445
             +L++    E R
Sbjct: 484 FGRLRQLLIKEER 496

Arabidopsis thaliana (taxid: 3702)
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 Back     alignment and function description
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 Back     alignment and function description
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 Back     alignment and function description
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 Back     alignment and function description
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2 Back     alignment and function description
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1 Back     alignment and function description
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1 Back     alignment and function description
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1 Back     alignment and function description
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
356560843488 PREDICTED: pentatricopeptide repeat-cont 0.954 0.905 0.560 1e-154
224070746472 predicted protein [Populus trichocarpa] 0.928 0.911 0.576 1e-153
357517439543 Pentatricopeptide repeat-containing prot 0.922 0.786 0.563 1e-150
255557793481 pentatricopeptide repeat-containing prot 0.892 0.858 0.568 1e-146
449519571503 PREDICTED: pentatricopeptide repeat-cont 0.939 0.864 0.531 1e-143
449466215487 PREDICTED: pentatricopeptide repeat-cont 0.915 0.870 0.534 1e-140
359474755464 PREDICTED: pentatricopeptide repeat-cont 0.894 0.892 0.526 1e-136
147859123493 hypothetical protein VITISV_005814 [Viti 0.887 0.833 0.525 1e-132
296087160506 unnamed protein product [Vitis vinifera] 0.941 0.861 0.419 3e-98
225453152502 PREDICTED: pentatricopeptide repeat-cont 0.941 0.868 0.419 4e-98
>gi|356560843|ref|XP_003548696.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 268/478 (56%), Positives = 338/478 (70%), Gaps = 36/478 (7%)

Query: 18  PSSSSTTTSPTSHNPHRPTRP-RFPTHLDAPYISSSARIICEILAHASSDDIESALACTG 76
           P  S     P S NP +P +P +FP+HLDAP +SS+AR +C+IL  +S  DIESAL+ +G
Sbjct: 8   PGRSRDLKHP-SKNPTKPPQPNQFPSHLDAPNVSSTARALCDILTRSSPQDIESALSSSG 66

Query: 77  IIPTPDLVHEVLQLSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAV 136
           I+P  +  +EVL+LSY+ PSSAV FFRWAGRG++   + WNLMVD+LGKN  FE MW+AV
Sbjct: 67  IVPEEECTNEVLRLSYNYPSSAVKFFRWAGRGKKHPVHTWNLMVDLLGKNQLFEPMWDAV 126

Query: 137 RVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQE 196
           R MK++  LSL TFAS+F SYC A +++EAVMSFDVM  +GV+QDVVAVNSLLSAIC ++
Sbjct: 127 RSMKQEQKLSLSTFASVFQSYCTAARFNEAVMSFDVMDRYGVKQDVVAVNSLLSAICSED 186

Query: 197 NQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLA 256
           NQTS  LEF   +K  V PDGD+FAILLEGWEKEGN  +A  TFG+MV    WN ++V A
Sbjct: 187 NQTSFGLEFFEGIKAKVPPDGDTFAILLEGWEKEGNAAKAKTTFGDMVAHIGWNKDNVAA 246

Query: 257 YETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHAVQLWDIM- 315
           Y+ FL+TL+R   +D+ ++FL+VMK  +CFP LKFF+ ALD LVK ND+ HAV +WD+M 
Sbjct: 247 YDAFLMTLLRAGLMDDVVRFLQVMKDHDCFPGLKFFTTALDFLVKQNDADHAVPVWDVMV 306

Query: 316 ---------------------------------MVFHGAFPDSLTYNMIFECLIKNKRVH 342
                                            M FHGAFPDSLTYNMIFECL+KNK+  
Sbjct: 307 SGELVPNLIMYNAMIGLLCNNAAVDHAFRLLDEMAFHGAFPDSLTYNMIFECLVKNKKAR 366

Query: 343 EVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILENGILPLEASANELL 402
           E E+FF EM+KNEW PT  NCA AI ML D D+PE A EIW+Y++EN + PL+ SAN LL
Sbjct: 367 ETERFFAEMVKNEWPPTGSNCAAAIAMLFDCDDPEAAHEIWSYVVENRVKPLDESANALL 426

Query: 403 VGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRSMRDIFDSLERRCKT 460
           +GL N+ R ++V+RFAE++L+RRI IY+ TM  LK AFY E RS RD +DSL RR K 
Sbjct: 427 IGLCNMSRFTEVKRFAEDILDRRINIYQSTMSILKDAFYKEGRSARDRYDSLYRRWKA 484

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224070746|ref|XP_002303222.1| predicted protein [Populus trichocarpa] gi|222840654|gb|EEE78201.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357517439|ref|XP_003629008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355523030|gb|AET03484.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255557793|ref|XP_002519926.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540972|gb|EEF42530.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449519571|ref|XP_004166808.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449466215|ref|XP_004150822.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359474755|ref|XP_002269803.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Vitis vinifera] gi|296085476|emb|CBI29208.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859123|emb|CAN82548.1| hypothetical protein VITISV_005814 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087160|emb|CBI33534.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225453152|ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
TAIR|locus:2103075508 AT3G04130 "AT3G04130" [Arabido 0.775 0.706 0.265 4.9e-26
TAIR|locus:2094394562 AT3G22670 [Arabidopsis thalian 0.697 0.574 0.259 1.3e-24
TAIR|locus:2026346510 AT1G71060 [Arabidopsis thalian 0.634 0.576 0.297 1.6e-24
TAIR|locus:2012883537 AT1G20300 [Arabidopsis thalian 0.565 0.487 0.285 4.7e-23
TAIR|locus:2096099599 AT3G62470 "AT3G62470" [Arabido 0.866 0.669 0.230 6.7e-23
TAIR|locus:2185455598 AT5G14820 "AT5G14820" [Arabido 0.866 0.670 0.225 1.4e-21
TAIR|locus:2096074599 AT3G62540 "AT3G62540" [Arabido 0.866 0.669 0.225 1.4e-21
TAIR|locus:2164910 747 EMB2745 "EMBRYO DEFECTIVE 2745 0.684 0.424 0.233 2.3e-21
TAIR|locus:2024296598 AT1G09900 "AT1G09900" [Arabido 0.684 0.530 0.250 4e-21
TAIR|locus:2077061 619 AT3G22470 "AT3G22470" [Arabido 0.660 0.494 0.233 5.8e-21
TAIR|locus:2103075 AT3G04130 "AT3G04130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 310 (114.2 bits), Expect = 4.9e-26, P = 4.9e-26
 Identities = 100/376 (26%), Positives = 180/376 (47%)

Query:    58 EILAHASSDDIESALACTGIIPTPDLVHEVLQLSYDSPSSAVDFFRWAG--RGQRLSPYA 115
             ++    SSD+I     C  +  +  LVH++L    D   SA+   +WA   +G + S  A
Sbjct:    69 DVFKRLSSDEI-----CKRVNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDA 123

Query:   116 WNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSFDVMSM 175
             +++ VD+LGK  ++++M   V  M+ D +++L T A I   + GAG+++EAV  FD +  
Sbjct:   124 YDMAVDILGKAKKWDRMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGE 183

Query:   176 HGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWEKEGNVEE 235
              G+E++  ++N LL  +C+ E +  +A   L ++K  + P+  +F I + GW K   VEE
Sbjct:   184 FGLEKNTESMNLLLDTLCK-EKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEE 242

Query:   236 ANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNA 295
             A  T  EM +   + P  V++Y T +    +  +  +  + L  M+     P    ++  
Sbjct:   243 ALWTIQEM-KGHGFRP-CVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTI 300

Query:   296 LDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNE 355
             +  L    +   A+++    M   G  PDSL YN +   L +  R+ E E+ F   ++  
Sbjct:   301 MSSLNAQKEFEEALRV-ATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFR--VEMP 357

Query:   356 WQPTPLNCAT---AITMLLDADEPEIAIEIWNYILENGIL-PLEASANELLVGLRNLGRL 411
                  +N +T    I M    DE + AIE+   +  + +  P   +   LL      G +
Sbjct:   358 ELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDV 417

Query:   412 SDVRRFAEEMLNRRIL 427
              +V +  +EM+ +  L
Sbjct:   418 VEVGKLLKEMVTKHHL 433
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_III000208
hypothetical protein (472 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
pfam1304150 pfam13041, PPR_2, PPR repeat family 1e-06
pfam1304150 pfam13041, PPR_2, PPR repeat family 2e-05
TIGR0075635 TIGR00756, PPR, pentatricopeptide repeat domain (P 2e-05
PLN03218 1060 PLN03218, PLN03218, maturation of RBCL 1; Provisio 4e-05
COG0457291 COG0457, NrfG, FOG: TPR repeat [General function p 4e-05
>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family Back     alignment and domain information 
 Score = 44.7 bits (107), Expect = 1e-06
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 323 PDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPT 359
           PD +TYN + +   K  +V E  K F+EM K   +P 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPN 37

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50
>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family Back     alignment and domain information
>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional Back     alignment and domain information
>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
PLN03218 1060 maturation of RBCL 1; Provisional 100.0
PLN03218 1060 maturation of RBCL 1; Provisional 100.0
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 100.0
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 100.0
PLN03077 857 Protein ECB2; Provisional 100.0
PLN03077 857 Protein ECB2; Provisional 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.96
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 99.95
PRK11788389 tetratricopeptide repeat protein; Provisional 99.94
PRK11788389 tetratricopeptide repeat protein; Provisional 99.93
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.89
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 99.88
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.88
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.86
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.86
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 99.86
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.86
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 99.85
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 99.84
PRK14574 822 hmsH outer membrane protein; Provisional 99.81
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.8
KOG4422625 consensus Uncharacterized conserved protein [Funct 99.76
PRK14574 822 hmsH outer membrane protein; Provisional 99.71
KOG2076 895 consensus RNA polymerase III transcription factor 99.7
KOG4422625 consensus Uncharacterized conserved protein [Funct 99.7
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.7
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.7
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.68
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.68
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 99.68
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.67
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.67
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.67
KOG1126638 consensus DNA-binding cell division cycle control 99.67
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.64
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.64
KOG1126638 consensus DNA-binding cell division cycle control 99.63
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.62
KOG2003 840 consensus TPR repeat-containing protein [General f 99.61
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.61
KOG2076 895 consensus RNA polymerase III transcription factor 99.58
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.57
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 99.56
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.55
KOG1915 677 consensus Cell cycle control protein (crooked neck 99.55
KOG0495 913 consensus HAT repeat protein [RNA processing and m 99.55
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.54
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.53
PRK12370553 invasion protein regulator; Provisional 99.51
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.5
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.5
PRK12370553 invasion protein regulator; Provisional 99.5
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.5
KOG1129478 consensus TPR repeat-containing protein [General f 99.49
KOG2003840 consensus TPR repeat-containing protein [General f 99.47
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.45
KOG4318 1088 consensus Bicoid mRNA stability factor [RNA proces 99.43
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.43
KOG0547606 consensus Translocase of outer mitochondrial membr 99.41
KOG1915 677 consensus Cell cycle control protein (crooked neck 99.4
PF1304150 PPR_2: PPR repeat family 99.4
PF1304150 PPR_2: PPR repeat family 99.39
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.38
KOG4318 1088 consensus Bicoid mRNA stability factor [RNA proces 99.38
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.35
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.33
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.31
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.29
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.28
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.26
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.25
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.24
PRK11189296 lipoprotein NlpI; Provisional 99.24
PRK11189296 lipoprotein NlpI; Provisional 99.23
KOG0547606 consensus Translocase of outer mitochondrial membr 99.23
KOG1129478 consensus TPR repeat-containing protein [General f 99.2
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.17
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.16
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.11
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 99.1
KOG2047 835 consensus mRNA splicing factor [RNA processing and 99.09
KOG3785557 consensus Uncharacterized conserved protein [Funct 99.08
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.07
KOG2376 652 consensus Signal recognition particle, subunit Srp 99.06
KOG4340459 consensus Uncharacterized conserved protein [Funct 99.03
KOG1125579 consensus TPR repeat-containing protein [General f 99.01
KOG2376 652 consensus Signal recognition particle, subunit Srp 99.0
KOG1125579 consensus TPR repeat-containing protein [General f 98.99
KOG3785557 consensus Uncharacterized conserved protein [Funct 98.97
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 98.96
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 98.96
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 98.92
KOG4340459 consensus Uncharacterized conserved protein [Funct 98.9
KOG4162799 consensus Predicted calmodulin-binding protein [Si 98.88
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 98.87
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 98.86
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 98.85
KOG2047835 consensus mRNA splicing factor [RNA processing and 98.85
PLN02789320 farnesyltranstransferase 98.84
PLN02789320 farnesyltranstransferase 98.82
KOG1128777 consensus Uncharacterized conserved protein, conta 98.8
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 98.79
PF1285434 PPR_1: PPR repeat 98.78
PRK04841 903 transcriptional regulator MalT; Provisional 98.77
PRK04841 903 transcriptional regulator MalT; Provisional 98.77
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 98.76
PF1285434 PPR_1: PPR repeat 98.76
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 98.76
KOG1128 777 consensus Uncharacterized conserved protein, conta 98.75
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.75
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.74
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 98.73
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 98.71
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 98.65
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.65
PRK14720 906 transcript cleavage factor/unknown domain fusion p 98.64
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.63
PRK14720 906 transcript cleavage factor/unknown domain fusion p 98.63
PRK10370198 formate-dependent nitrite reductase complex subuni 98.58
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.58
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.57
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.56
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 98.56
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.56
PRK10370198 formate-dependent nitrite reductase complex subuni 98.55
PRK15359144 type III secretion system chaperone protein SscB; 98.55
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 98.54
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.51
PRK15359144 type III secretion system chaperone protein SscB; 98.5
KOG3060289 consensus Uncharacterized conserved protein [Funct 98.47
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.46
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.42
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 98.41
COG4783484 Putative Zn-dependent protease, contains TPR repea 98.4
TIGR02552135 LcrH_SycD type III secretion low calcium response 98.36
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 98.35
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.34
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.31
TIGR0075635 PPR pentatricopeptide repeat domain (PPR motif). T 98.28
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.26
TIGR0075635 PPR pentatricopeptide repeat domain (PPR motif). T 98.22
PF10037 429 MRP-S27: Mitochondrial 28S ribosomal protein S27; 98.19
PF1381234 PPR_3: Pentatricopeptide repeat domain 98.19
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.19
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.16
PF1381234 PPR_3: Pentatricopeptide repeat domain 98.14
PF10037 429 MRP-S27: Mitochondrial 28S ribosomal protein S27; 98.13
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.08
PF0153531 PPR: PPR repeat; InterPro: IPR002885 This entry re 98.0
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 98.0
COG5107 660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 97.98
PF08579120 RPM2: Mitochondrial ribonuclease P subunit (RPM2); 97.95
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 97.95
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 97.92
cd00189100 TPR Tetratricopeptide repeat domain; typically con 97.92
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 97.91
PF05843 280 Suf: Suppressor of forked protein (Suf); InterPro: 97.89
PF0153531 PPR: PPR repeat; InterPro: IPR002885 This entry re 97.89
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 97.87
PF08579120 RPM2: Mitochondrial ribonuclease P subunit (RPM2); 97.87
cd00189100 TPR Tetratricopeptide repeat domain; typically con 97.84
PF04840319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 97.82
PF06239228 ECSIT: Evolutionarily conserved signalling interme 97.81
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 97.8
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 97.75
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.74
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 97.74
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 97.71
PLN03088356 SGT1, suppressor of G2 allele of SKP1; Provisional 97.68
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 97.65
PRK02603172 photosystem I assembly protein Ycf3; Provisional 97.65
KOG0553304 consensus TPR repeat-containing protein [General f 97.64
PF06239228 ECSIT: Evolutionarily conserved signalling interme 97.63
COG4700251 Uncharacterized protein conserved in bacteria cont 97.63
CHL00033168 ycf3 photosystem I assembly protein Ycf3 97.61
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 97.61
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 97.6
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 97.58
PRK02603172 photosystem I assembly protein Ycf3; Provisional 97.58
PRK10153517 DNA-binding transcriptional activator CadC; Provis 97.58
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 97.58
PRK10153517 DNA-binding transcriptional activator CadC; Provis 97.55
COG3898531 Uncharacterized membrane-bound protein [Function u 97.54
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 97.52
CHL00033168 ycf3 photosystem I assembly protein Ycf3 97.48
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 97.48
KOG2796366 consensus Uncharacterized conserved protein [Funct 97.48
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 97.46
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 97.45
PF12688120 TPR_5: Tetratrico peptide repeat 97.42
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 97.42
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 97.35
PF12688120 TPR_5: Tetratrico peptide repeat 97.31
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 97.3
KOG20411189 consensus WD40 repeat protein [General function pr 97.29
PRK10803263 tol-pal system protein YbgF; Provisional 97.27
PF07079 549 DUF1347: Protein of unknown function (DUF1347); In 97.27
KOG0553304 consensus TPR repeat-containing protein [General f 97.25
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 97.23
PF12921126 ATP13: Mitochondrial ATPase expression; InterPro: 97.23
COG4235287 Cytochrome c biogenesis factor [Posttranslational 97.23
COG4235287 Cytochrome c biogenesis factor [Posttranslational 97.21
PF12921126 ATP13: Mitochondrial ATPase expression; InterPro: 97.14
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 97.12
PF03704146 BTAD: Bacterial transcriptional activator domain; 97.1
PF04840319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 97.1
COG5107 660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 97.07
PRK10803263 tol-pal system protein YbgF; Provisional 97.06
PF1337173 TPR_9: Tetratricopeptide repeat 97.06
KOG15381081 consensus Uncharacterized conserved protein WDR10, 96.96
COG4105254 ComL DNA uptake lipoprotein [General function pred 96.91
PF1337173 TPR_9: Tetratricopeptide repeat 96.89
COG4700251 Uncharacterized protein conserved in bacteria cont 96.86
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 96.86
PF03704146 BTAD: Bacterial transcriptional activator domain; 96.82
KOG2796366 consensus Uncharacterized conserved protein [Funct 96.78
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 96.67
COG3118304 Thioredoxin domain-containing protein [Posttransla 96.64
smart00299140 CLH Clathrin heavy chain repeat homology. 96.5
PF13281374 DUF4071: Domain of unknown function (DUF4071) 96.5
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 96.48
KOG2610 491 consensus Uncharacterized conserved protein [Funct 96.48
PLN03098453 LPA1 LOW PSII ACCUMULATION1; Provisional 96.47
COG3898531 Uncharacterized membrane-bound protein [Function u 96.38
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 96.38
PRK15331165 chaperone protein SicA; Provisional 96.36
COG1729262 Uncharacterized protein conserved in bacteria [Fun 96.34
PF09205161 DUF1955: Domain of unknown function (DUF1955); Int 96.32
PRK15331165 chaperone protein SicA; Provisional 96.28
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 96.27
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 96.27
KOG3941 406 consensus Intermediate in Toll signal transduction 96.27
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 96.23
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 96.23
PRK11906458 transcriptional regulator; Provisional 96.21
KOG1258 577 consensus mRNA processing protein [RNA processing 96.06
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 95.99
PRK11906458 transcriptional regulator; Provisional 95.95
KOG3941 406 consensus Intermediate in Toll signal transduction 95.93
COG3118304 Thioredoxin domain-containing protein [Posttransla 95.92
PF1342844 TPR_14: Tetratricopeptide repeat 95.91
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 95.9
KOG1585308 consensus Protein required for fusion of vesicles 95.79
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 95.74
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 95.69
KOG1941 518 consensus Acetylcholine receptor-associated protei 95.66
PF13281374 DUF4071: Domain of unknown function (DUF4071) 95.62
COG3629280 DnrI DNA-binding transcriptional activator of the 95.54
PF13512142 TPR_18: Tetratricopeptide repeat 95.52
COG1729262 Uncharacterized protein conserved in bacteria [Fun 95.51
smart00299140 CLH Clathrin heavy chain repeat homology. 95.45
PF13512142 TPR_18: Tetratricopeptide repeat 95.45
PF1342844 TPR_14: Tetratricopeptide repeat 95.42
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 95.23
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 95.21
KOG1941 518 consensus Acetylcholine receptor-associated protei 95.01
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 94.99
PF13170297 DUF4003: Protein of unknown function (DUF4003) 94.88
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 94.86
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 94.84
KOG4555175 consensus TPR repeat-containing protein [Function 94.81
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 94.8
PF07035167 Mic1: Colon cancer-associated protein Mic1-like; I 94.76
KOG4555175 consensus TPR repeat-containing protein [Function 94.74
COG3629280 DnrI DNA-binding transcriptional activator of the 94.74
KOG2610491 consensus Uncharacterized conserved protein [Funct 94.73
KOG20411189 consensus WD40 repeat protein [General function pr 94.72
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 94.7
PF07079 549 DUF1347: Protein of unknown function (DUF1347); In 94.67
COG4105254 ComL DNA uptake lipoprotein [General function pred 94.57
KOG1550552 consensus Extracellular protein SEL-1 and related 94.51
COG0457291 NrfG FOG: TPR repeat [General function prediction 94.27
PF09205161 DUF1955: Domain of unknown function (DUF1955); Int 94.19
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 93.99
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 93.69
COG0457291 NrfG FOG: TPR repeat [General function prediction 93.57
COG3947361 Response regulator containing CheY-like receiver a 93.52
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 93.52
KOG1550552 consensus Extracellular protein SEL-1 and related 93.35
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 93.19
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 93.12
PF07035167 Mic1: Colon cancer-associated protein Mic1-like; I 93.06
COG4649221 Uncharacterized protein conserved in bacteria [Fun 92.77
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 92.63
PF02284108 COX5A: Cytochrome c oxidase subunit Va; InterPro: 92.49
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 92.49
COG1747 711 Uncharacterized N-terminal domain of the transcrip 92.43
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 92.36
COG4649221 Uncharacterized protein conserved in bacteria [Fun 92.33
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 92.22
PF1343134 TPR_17: Tetratricopeptide repeat 91.95
PF1343134 TPR_17: Tetratricopeptide repeat 91.94
PF04184539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 91.89
PF13170297 DUF4003: Protein of unknown function (DUF4003) 91.85
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 91.73
cd00923103 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. 91.68
KOG4570 418 consensus Uncharacterized conserved protein [Funct 91.51
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 91.31
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 90.79
PF13929292 mRNA_stabil: mRNA stabilisation 90.73
KOG4570 418 consensus Uncharacterized conserved protein [Funct 90.68
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 90.6
PF02284108 COX5A: Cytochrome c oxidase subunit Va; InterPro: 90.35
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 89.94
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 89.79
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 89.7
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 89.6
KOG1258 577 consensus mRNA processing protein [RNA processing 89.32
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 89.27
cd00923103 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. 88.87
KOG0403645 consensus Neoplastic transformation suppressor Pdc 88.87
COG4455273 ImpE Protein of avirulence locus involved in tempe 88.8
COG5159 421 RPN6 26S proteasome regulatory complex component [ 88.14
PF06552186 TOM20_plant: Plant specific mitochondrial import r 87.78
KOG1585308 consensus Protein required for fusion of vesicles 87.66
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 87.55
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 87.29
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 87.27
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 86.91
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 86.78
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 86.66
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 86.38
KOG4234271 consensus TPR repeat-containing protein [General f 86.37
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 86.33
KOG2471 696 consensus TPR repeat-containing protein [General f 86.32
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 86.3
PF13762145 MNE1: Mitochondrial splicing apparatus component 85.19
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 85.19
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 85.07
PF04097 613 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 85.04
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 84.52
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 84.3
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 84.08
COG3947361 Response regulator containing CheY-like receiver a 83.89
KOG4077149 consensus Cytochrome c oxidase, subunit Va/COX6 [E 83.77
TIGR02508115 type_III_yscG type III secretion protein, YscG fam 83.59
COG4455273 ImpE Protein of avirulence locus involved in tempe 83.53
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 83.0
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 82.85
KOG4648 536 consensus Uncharacterized conserved protein, conta 82.8
KOG4234271 consensus TPR repeat-containing protein [General f 82.42
KOG4648 536 consensus Uncharacterized conserved protein, conta 82.16
COG5159 421 RPN6 26S proteasome regulatory complex component [ 81.9
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 81.77
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 81.73
COG2976207 Uncharacterized protein conserved in bacteria [Fun 81.37
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 81.06
PF10366108 Vps39_1: Vacuolar sorting protein 39 domain 1; Int 80.98
PF1184848 DUF3368: Domain of unknown function (DUF3368); Int 80.41
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.6e-60  Score=475.56  Aligned_cols=403  Identities=16%  Similarity=0.222  Sum_probs=367.6

Q ss_pred             hHHHHHHHHhcCC---hhhHHHHHhhCCCC-CCHHHHHHHHH--hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 012442           52 SARIICEILAHAS---SDDIESALACTGII-PTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGK  125 (463)
Q Consensus        52 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~  125 (463)
                      ....+....+...   +.++...|...|+. ++...++.++.  ...+..+.|..+|+.|..   ||..+|+.++.+|++
T Consensus       373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k  449 (1060)
T PLN03218        373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCAS  449 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHh
Confidence            3344444544433   34678888888865 44445555555  346889999999998874   999999999999999


Q ss_pred             CCChHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHccCCcHHHHHH
Q 012442          126 NGRFEQMWNAVRVMKEDGV-LSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGVEQDVVAVNSLLSAICRQENQTSRALE  204 (463)
Q Consensus       126 ~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~a~~  204 (463)
                      .|+++.|.++|++|.+.|. |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.+
T Consensus       450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-G~~eeAl~  528 (1060)
T PLN03218        450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-GQVAKAFG  528 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-cCHHHHHH
Confidence            9999999999999999997 789999999999999999999999999999999999999999999999999 99999999


Q ss_pred             HHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhh
Q 012442          205 FLNRVKK-IVDPDGDSFAILLEGWEKEGNVEEANKTFGEMVER-FEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKG  282 (463)
Q Consensus       205 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  282 (463)
                      +|++|.+ ++.||..+|+.+|.+|++.|++++|.++|++|... .|+.| |..+|+.+|.+|++.|++++|.++|++|.+
T Consensus       529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e  607 (1060)
T PLN03218        529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHE  607 (1060)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999987 99999999999999999999999999999999763 37889 788999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH
Q 012442          283 ENCFPTLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLN  362 (463)
Q Consensus       283 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  362 (463)
                      .|+.|+..+|+.+|.+|++.|++++|.++|++ |...|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus       608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~e-M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t  686 (1060)
T PLN03218        608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD-MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS  686 (1060)
T ss_pred             cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence            99999999999999999999999999999999 68899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHH
Q 012442          363 CATAITMLLDADEPEIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYN  442 (463)
Q Consensus       363 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  442 (463)
                      |+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus       687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k  766 (1060)
T PLN03218        687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER  766 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhhhHHHHHHHHHhhcC
Q 012442          443 ESRSMRDIFDSLERRCKTSQ  462 (463)
Q Consensus       443 ~g~~a~~~~~~~~~~~~~~~  462 (463)
                      .|+.  +.+.+++++|.+.+
T Consensus       767 ~G~l--e~A~~l~~~M~k~G  784 (1060)
T PLN03218        767 KDDA--DVGLDLLSQAKEDG  784 (1060)
T ss_pred             CCCH--HHHHHHHHHHHHcC
Confidence            9999  55555555555543

>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG4422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG4422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13041 PPR_2: PPR repeat family Back     alignment and domain information
>PF13041 PPR_2: PPR repeat family Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) Back     alignment and domain information
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF13812 PPR_3: Pentatricopeptide repeat domain Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF13812 PPR_3: Pentatricopeptide repeat domain Back     alignment and domain information
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF13170 DUF4003: Protein of unknown function (DUF4003) Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>PF13170 DUF4003: Protein of unknown function (DUF4003) Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va Back     alignment and domain information
>KOG4570 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13929 mRNA_stabil: mRNA stabilisation Back     alignment and domain information
>KOG4570 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va Back     alignment and domain information
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] Back     alignment and domain information
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>PF13762 MNE1: Mitochondrial splicing apparatus component Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] Back     alignment and domain information
>TIGR02508 type_III_yscG type III secretion protein, YscG family Back     alignment and domain information
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 4e-07
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 6e-07
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 4e-06
4g1t_A472 Interferon-induced protein with tetratricopeptide 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 53/393 (13%), Positives = 101/393 (25%), Gaps = 127/393 (32%)

Query: 168 MSFDVMSMHGVEQDVVAVN---------------SLLSAICRQE-----------NQTSR 201
           M F+        +D+++V                   S + ++E           + T R
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 202 ALEFL-----NRVKKIV-DPDGDSFAILLEGWEKEGN---------VEEANKTFGEMVER 246
               L       V+K V +    ++  L+   + E           +E+ ++ + +  + 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQV 125

Query: 247 FE----WNPEHVLAYETFLITLIR------------GKQV--DEALKFLRVMKGENCFP- 287
           F        +  L     L+ L              GK     +     +V   +     
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV---QCKMDF 182

Query: 288 -----TLKFFSNALDILVKLNDSTHAVQLWDIMMVFHGAFPD-SLTYNMIFECLIKNKRV 341
                 LK  ++   +L  L        L   +     +  D S    +    +    R 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQK------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 342 HEVEKFFHEMI--------KNEWQPTPLNCATAIT---------------------MLLD 372
               K +   +           W    L+C   +T                         
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 373 ADEPEIAIEIWNYILENGI--LPLEA-SANELLVGLRNLGRLSDVRRFAE---EMLNRRI 426
              P+    +    L+     LP E  + N   + +            AE   + L    
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-----------IAESIRDGLATWD 345

Query: 427 LIYEVTMHKLK---KAFYN--ESRSMRDIFDSL 454
               V   KL    ++  N  E    R +FD L
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 100.0
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 100.0
4g26_A 501 Pentatricopeptide repeat-containing protein AT2G3 100.0
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.97
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 99.97
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.94
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 99.94
2gw1_A514 Mitochondrial precursor proteins import receptor; 99.93
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.92
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.9
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 99.9
2gw1_A514 Mitochondrial precursor proteins import receptor; 99.9
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.89
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 99.87
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 99.86
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.86
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 99.85
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.84
4eqf_A365 PEX5-related protein; accessory protein, tetratric 99.84
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.82
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 99.82
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.81
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 99.8
3spa_A 1134 Mtrpol, DNA-directed RNA polymerase, mitochondrial 99.8
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.8
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.8
1b89_A449 Protein (clathrin heavy chain); triskelion, coated 99.8
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 99.77
2xm6_A490 Protein corresponding to locus C5321 from CFT073 s 99.76
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.75
2ooe_A530 Cleavage stimulation factor 77 kDa subunit; HAT do 99.73
4g1t_A472 Interferon-induced protein with tetratricopeptide 99.73
1b89_A 449 Protein (clathrin heavy chain); triskelion, coated 99.72
3u4t_A272 TPR repeat-containing protein; structural genomics 99.72
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.7
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.69
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.69
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 99.69
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.69
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.68
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 99.67
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 99.67
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.65
3u4t_A272 TPR repeat-containing protein; structural genomics 99.65
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 99.65
2h6f_A382 Protein farnesyltransferase/geranylgeranyltransfer 99.65
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.64
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.64
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 99.63
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 99.62
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.62
3sf4_A406 G-protein-signaling modulator 2; tetratricopeptide 99.62
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.62
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.61
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 99.61
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 99.61
1ouv_A273 Conserved hypothetical secreted protein; TPR repea 99.6
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.6
3ro2_A338 PINS homolog, G-protein-signaling modulator 2; TPR 99.59
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.59
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.58
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 99.57
3vtx_A184 MAMA; tetratricopeptide repeats (TPR) containing p 99.54
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.53
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.52
3e4b_A452 ALGK; tetratricopeptide repeat, superhelix, algina 99.51
4abn_A474 Tetratricopeptide repeat protein 5; P53 cofactor, 99.5
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.5
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.49
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 99.49
3ulq_A383 Response regulator aspartate phosphatase F; tetrat 99.48
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.45
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.44
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.44
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.44
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.43
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 99.39
3q15_A378 PSP28, response regulator aspartate phosphatase H; 99.37
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.36
4gyw_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 99.36
1hz4_A373 MALT regulatory protein; two-helix bundles, helix 99.35
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 99.34
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.33
4i17_A228 Hypothetical protein; TPR repeats protein, structu 99.28
3edt_B283 KLC 2, kinesin light chain 2; superhelical, struct 99.28
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.21
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.21
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.2
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.19
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 99.17
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.15
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.15
3qky_A261 Outer membrane assembly lipoprotein YFIO; membrane 99.14
2pzi_A681 Probable serine/threonine-protein kinase PKNG; ATP 99.13
1qqe_A292 Vesicular transport protein SEC17; helix-turn-heli 99.12
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 99.11
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.1
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 99.09
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.08
3mv2_B310 Coatomer subunit epsilon; vesicular membrane coat 99.07
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 99.07
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 99.07
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.06
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.05
3dra_A306 Protein farnesyltransferase/geranylgeranyltransfer 99.05
3qou_A287 Protein YBBN; thioredoxin-like fold, tetratricopep 99.03
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 99.03
2r5s_A176 Uncharacterized protein VP0806; APC090868.1, vibri 99.02
2yhc_A225 BAMD, UPF0169 lipoprotein YFIO; essential BAM comp 98.98
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 98.96
4ga2_A150 E3 SUMO-protein ligase ranbp2; TPR motif, nuclear 98.95
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 98.92
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 98.89
2ifu_A307 Gamma-SNAP; membrane fusion, snare complex disasse 98.88
3u3w_A293 Transcriptional activator PLCR protein; ternary co 98.88
3q7a_A349 Farnesyltransferase alpha subunit; protein prenylt 98.87
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 98.86
3u3w_A293 Transcriptional activator PLCR protein; ternary co 98.86
3rjv_A212 Putative SEL1 repeat protein; alpha-alpha superhel 98.86
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 98.82
2qfc_A293 PLCR protein; TPR, HTH, transcription regulation; 98.81
1a17_A166 Serine/threonine protein phosphatase 5; hydrolase, 98.81
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 98.81
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 98.79
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 98.79
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 98.78
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 98.78
4gco_A126 Protein STI-1; structural genomics, PSI-biology, m 98.77
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 98.76
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 98.75
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 98.73
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 98.73
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 98.72
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.72
2lni_A133 Stress-induced-phosphoprotein 1; structural genomi 98.72
2uy1_A493 Cleavage stimulation factor 77; RNA-binding protei 98.71
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 98.71
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 98.7
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 98.69
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 98.69
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 98.69
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 98.68
2vyi_A131 SGTA protein; chaperone, TPR repeat, phosphoprotei 98.68
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 98.67
4f3v_A282 ESX-1 secretion system protein ECCA1; tetratricope 98.67
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.65
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 98.63
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 98.62
3dss_A331 Geranylgeranyl transferase type-2 subunit alpha; p 98.61
1p5q_A336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 98.6
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 98.57
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 98.57
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 98.57
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 98.57
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 98.56
3upv_A126 Heat shock protein STI1; TPR-fold, adaptor protein 98.52
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 98.51
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 98.47
3q49_B137 STIP1 homology and U box-containing protein 1; E3 98.45
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 98.45
3sz7_A164 HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G 98.44
4b4t_Q 434 26S proteasome regulatory subunit RPN6; hydrolase, 98.43
4gcn_A127 Protein STI-1; structural genomics, PSI-biology, m 98.42
2dba_A148 Smooth muscle cell associated protein-1, isoform 2 98.41
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 98.4
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 98.4
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 98.39
4b4t_Q434 26S proteasome regulatory subunit RPN6; hydrolase, 98.38
3q49_B137 STIP1 homology and U box-containing protein 1; E3 98.38
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 98.37
1elr_A131 TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp 98.36
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 98.3
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 98.3
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 98.29
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 98.27
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 98.27
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 98.25
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 98.23
1kt0_A457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 98.22
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 98.21
1wao_1 477 Serine/threonine protein phosphatase 5; hydrolase, 98.2
3ro3_A164 PINS homolog, G-protein-signaling modulator 2; asy 98.19
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 98.17
1ihg_A370 Cyclophilin 40; ppiase immunophilin tetratricopept 98.16
3k9i_A117 BH0479 protein; putative protein binding protein, 98.13
3k9i_A117 BH0479 protein; putative protein binding protein, 98.12
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 98.1
1dce_A 567 Protein (RAB geranylgeranyltransferase alpha subun 98.1
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 98.08
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 98.08
2if4_A338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 98.02
2l6j_A111 TPR repeat-containing protein associated with HSP; 97.91
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 97.9
2kat_A115 Uncharacterized protein; NESG, structure, structur 97.9
2hr2_A159 Hypothetical protein; alpha-alpha superhelix fold, 97.84
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 97.77
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 97.76
2kat_A115 Uncharacterized protein; NESG, structure, structur 97.75
2l6j_A111 TPR repeat-containing protein associated with HSP; 97.75
1klx_A138 Cysteine rich protein B; structural genomics, heli 97.71
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 97.69
1na3_A91 Designed protein CTPR2; de novo protein; HET: IPT; 97.68
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 97.67
1klx_A138 Cysteine rich protein B; structural genomics, heli 97.65
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 97.58
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 97.58
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 97.57
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 97.22
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 97.11
3ly7_A372 Transcriptional activator CADC; alpha/beta domain, 97.07
3qww_A433 SET and MYND domain-containing protein 2; methyltr 96.98
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 96.98
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 96.89
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 96.88
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.85
3qww_A433 SET and MYND domain-containing protein 2; methyltr 96.72
3bee_A93 Putative YFRE protein; putaive YFRE protein, struc 96.7
2kc7_A99 BFR218_protein; tetratricopeptide repeat, all-alph 96.54
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 96.53
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 96.48
1pc2_A152 Mitochondria fission protein; unknown function; NM 96.36
1wy6_A172 Hypothetical protein ST1625; helical repeat protei 96.32
1pc2_A152 Mitochondria fission protein; unknown function; NM 96.31
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 96.22
3u64_A301 Protein TP_0956; tetratrico peptide repeat, protei 96.14
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 96.01
2v5f_A104 Prolyl 4-hydroxylase subunit alpha-1; endoplasmic 95.97
4gns_B754 Protein CSD3, chitin biosynthesis protein CHS6; FN 95.63
3mkq_B177 Coatomer subunit alpha; beta-propeller, alpha-sole 95.53
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 95.45
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 95.27
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 94.99
1wy6_A172 Hypothetical protein ST1625; helical repeat protei 94.96
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 94.5
3lvg_A 624 Clathrin heavy chain 1; SELF assembly, coated PIT, 94.39
4b4t_P 445 26S proteasome regulatory subunit RPN5; hydrolase, 94.25
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 94.06
4b4t_P445 26S proteasome regulatory subunit RPN5; hydrolase, 93.87
1nzn_A126 CGI-135 protein, fission protein FIS1P; TPR, unkno 93.66
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 93.52
4fhn_B1139 Nucleoporin NUP120; protein complex,structural pro 93.48
1v54_E109 Cytochrome C oxidase polypeptide VA; oxidoreductas 93.17
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 93.12
4gns_B 754 Protein CSD3, chitin biosynthesis protein CHS6; FN 91.85
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 91.11
2y69_E152 Cytochrome C oxidase subunit 5A; electron transpor 91.04
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 89.59
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 88.83
1v54_E109 Cytochrome C oxidase polypeptide VA; oxidoreductas 88.8
2p58_C116 Putative type III secretion protein YSCG; type III 88.62
2y69_E152 Cytochrome C oxidase subunit 5A; electron transpor 87.11
2p58_C116 Putative type III secretion protein YSCG; type III 86.29
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 86.05
2nsz_A129 Programmed cell death protein 4; PDCD4, tumor supp 85.76
1zbp_A273 Hypothetical protein VPA1032; alpha-beta protein, 85.65
3lvg_A 624 Clathrin heavy chain 1; SELF assembly, coated PIT, 85.57
2uwj_G115 Type III export protein PSCG; virulence, chaperone 85.21
2uwj_G115 Type III export protein PSCG; virulence, chaperone 84.48
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 83.21
2wpv_A312 GET4, UPF0363 protein YOR164C; golgi-ER traffickin 82.91
3txn_A394 26S proteasome regulatory complex subunit P42B; PC 82.86
2ion_A152 PDCD4, programmed cell death 4, PDCD4; alpha-helic 82.22
4b4t_R429 RPN7, 26S proteasome regulatory subunit RPN7; hydr 82.15
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 81.74
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 81.7
1y8m_A144 FIS1; mitochondria, unknown function; NMR {Sacchar 81.67
3eiq_C358 Programmed cell death protein 4; PDCD4, anti-oncog 81.59
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 81.4
3ffl_A167 Anaphase-promoting complex subunit 7; tetratricope 81.05
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=3.9e-33  Score=275.98  Aligned_cols=369  Identities=11%  Similarity=0.030  Sum_probs=244.8

Q ss_pred             CCCCHHHHHHHHH--hccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcC-----------
Q 012442           77 IIPTPDLVHEVLQ--LSYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDG-----------  143 (463)
Q Consensus        77 ~~~~~~~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------  143 (463)
                      ..|+...+..+..  ...|+++.|+.+|+.+.. .+++..+++.++.+|.+.|++++|.++|+++....           
T Consensus       113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  191 (597)
T 2xpi_A          113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM  191 (597)
T ss_dssp             HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred             hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence            4466666665555  457899999999987753 47888899999999999999999999998533222           


Q ss_pred             -----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----------------------------------------
Q 012442          144 -----VLSLPTFASIFDSYCGAGKYDEAVMSFDVMSMHGV----------------------------------------  178 (463)
Q Consensus       144 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------------------------------------  178 (463)
                           ..+..+|+.++.+|.+.|++++|+++|++|.+.+.                                        
T Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  271 (597)
T 2xpi_A          192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL  271 (597)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence                 12477899999999999999999999988875431                                        


Q ss_pred             ------------------------------CcCHHHHHHHHHHHHccCCcHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 012442          179 ------------------------------EQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPDGDSFAILLEGWE  228 (463)
Q Consensus       179 ------------------------------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  228 (463)
                                                    +++..+|+.++..|.+. |++++|+++|+++.+..+.+..+++.++.+|.
T Consensus       272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  350 (597)
T 2xpi_A          272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR-SRFIDVLAITTKILEIDPYNLDVYPLHLASLH  350 (597)
T ss_dssp             HHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHH
Confidence                                          13444555555555555 55555555555555433345555555555555


Q ss_pred             hcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 012442          229 KEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNALDILVKLNDSTHA  308 (463)
Q Consensus       229 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a  308 (463)
                      +.|++++|.++|+++.+.   .|++..+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|
T Consensus       351 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A  426 (597)
T 2xpi_A          351 ESGEKNKLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQA  426 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            555555555555555443   44456666677777777777777777777766543 23456677777777777777777


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 012442          309 VQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEPEIAIEIWNYILE  388 (463)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  388 (463)
                      .++|+++...  .+.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+
T Consensus       427 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  503 (597)
T 2xpi_A          427 ISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALL  503 (597)
T ss_dssp             HHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            7777764332  12355667777777777777777777777776654 45666777777777777777777777777765


Q ss_pred             c----CCCCC--hhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHhcch--hhhHHHHHH
Q 012442          389 N----GILPL--EASANELLVGLRNLGRLSDVRRFAEEMLNRRILIYEVTMHKLKKAFYNESRS--MRDIFDSLE  455 (463)
Q Consensus       389 ~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--a~~~~~~~~  455 (463)
                      .    +..|+  ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++  |.+.+++++
T Consensus       504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  577 (597)
T 2xpi_A          504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESL  577 (597)
T ss_dssp             HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4    44565  5577777777777777777777777776654 23566777777777777776  444444333
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Back     alignment and structure
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Back     alignment and structure
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Back     alignment and structure
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Back     alignment and structure
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* Back     alignment and structure
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} Back     alignment and structure
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Back     alignment and structure
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Back     alignment and structure
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A Back     alignment and structure
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Back     alignment and structure
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Back     alignment and structure
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Back     alignment and structure
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Back     alignment and structure
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Back     alignment and structure
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Back     alignment and structure
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Back     alignment and structure
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 Back     alignment and structure
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} Back     alignment and structure
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... Back     alignment and structure
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} Back     alignment and structure
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Back     alignment and structure
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A Back     alignment and structure
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Back     alignment and structure
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Back     alignment and structure
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} Back     alignment and structure
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A Back     alignment and structure
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Back     alignment and structure
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A Back     alignment and structure
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Back     alignment and structure
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus} Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 463
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 2e-06
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 5e-04
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 0.001
d2gycq1106 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escheric 5e-05
d1i4ja_110 d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquat 1e-04
d2zjrp1127 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococ 0.002
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 7/182 (3%)

Query: 98  AVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSY 157
           A+  F  A         A+  + +VL +   F++   A                ++   Y
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247

Query: 158 CGAGKYDEAVMSFD-VMSMHGVEQDVVAVNSLLSAICRQENQTSRALEFLNRVKKIVDPD 216
              G  D A+ ++   + +             L+   +++   + A +  N   ++    
Sbjct: 248 YEQGLIDLAIDTYRRAIELQ---PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

Query: 217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKF 276
            DS   L     ++GN+EEA + + + +E     PE   A+      L +  ++ EAL  
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMH 361

Query: 277 LR 278
            +
Sbjct: 362 YK 363
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106 Back     information, alignment and structure
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110 Back     information, alignment and structure
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.92
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 99.88
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.7
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.67
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.43
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.36
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.33
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.3
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.28
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.24
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.22
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.19
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.14
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.11
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 98.83
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 98.69
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 98.67
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 98.65
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.63
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 98.61
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 98.6
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 98.59
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 98.46
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 98.45
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 98.4
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 98.4
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.36
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.32
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 98.28
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 98.27
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 98.18
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 98.16
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 98.13
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 98.09
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 98.05
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 97.99
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 97.99
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 97.98
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 97.98
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 97.93
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 97.91
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 97.89
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 97.87
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 97.87
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 97.83
d1ya0a1 497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 97.81
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 97.79
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 97.77
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 97.76
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 97.6
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 97.3
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 97.16
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 97.1
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 96.87
d1wy6a1161 Hypothetical protein ST1625 {Archaeon Sulfolobus t 96.52
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 95.92
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 95.82
d1wy6a1161 Hypothetical protein ST1625 {Archaeon Sulfolobus t 94.15
d1v54e_105 Cytochrome c oxidase subunit E {Cow (Bos taurus) [ 92.42
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 91.33
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 89.11
d2nsza1129 Programmed cell death 4, PDCD4 {Mouse (Mus musculu 88.86
d1v54e_105 Cytochrome c oxidase subunit E {Cow (Bos taurus) [ 87.27
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 86.67
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-21  Score=176.89  Aligned_cols=343  Identities=11%  Similarity=0.046  Sum_probs=281.1

Q ss_pred             ccCCchHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 012442           91 SYDSPSSAVDFFRWAGRGQRLSPYAWNLMVDVLGKNGRFEQMWNAVRVMKEDGVLSLPTFASIFDSYCGAGKYDEAVMSF  170 (463)
Q Consensus        91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  170 (463)
                      ..|+++.|++.|+.+.+..|.+..++..+..+|.+.|++++|...|++..+.++.+..+|..+...|.+.|++++|++.+
T Consensus        11 ~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~   90 (388)
T d1w3ba_          11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY   90 (388)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccc
Confidence            46899999999998877677788999999999999999999999999999888888889999999999999999999999


Q ss_pred             HHHHhCCCCcCHHHHHH----------------------------------HHHHHHccCCcHHHHHHHHHHhhcCCCCC
Q 012442          171 DVMSMHGVEQDVVAVNS----------------------------------LLSAICRQENQTSRALEFLNRVKKIVDPD  216 (463)
Q Consensus       171 ~~m~~~g~~~~~~~~~~----------------------------------ll~~~~~~~~~~~~a~~~~~~~~~~~~~~  216 (463)
                      ....+.. ..+...+..                                  ........ +....+...+.......+.+
T Consensus        91 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  168 (388)
T d1w3ba_          91 RHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKAL-GRLEEAKACYLKAIETQPNF  168 (388)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHCTTC
T ss_pred             ccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccc-chhhhhHHHHHHhhccCcch
Confidence            8887654 222222111                                  22222223 45555555555555555667


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCchHhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 012442          217 GDSFAILLEGWEKEGNVEEANKTFGEMVERFEWNPEHVLAYETFLITLIRGKQVDEALKFLRVMKGENCFPTLKFFSNAL  296 (463)
Q Consensus       217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll  296 (463)
                      ...+..+...+...|++++|...++...+.   .|++..+|..+...+...|++++|...+++....+ +.+...+..+.
T Consensus       169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  244 (388)
T d1w3ba_         169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA  244 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHhhcccccccCcHHHHHHHHHHHHHh---CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHH
Confidence            788888999999999999999999998775   77788899999999999999999999999998865 45677888899


Q ss_pred             HHHHHcCCHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCCCCH
Q 012442          297 DILVKLNDSTHAVQLWDIMMVFHGAFPDSLTYNMIFECLIKNKRVHEVEKFFHEMIKNEWQPTPLNCATAITMLLDADEP  376 (463)
Q Consensus       297 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  376 (463)
                      ..+.+.|++++|...|++++...  +-+...|..+...+...|++++|.+.++...... +.+...+..+...+...|++
T Consensus       245 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  321 (388)
T d1w3ba_         245 CVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCH
Confidence            99999999999999999965532  3356788899999999999999999999998875 77888999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCcc-CHHHHHHHHHHHHHhcc
Q 012442          377 EIAIEIWNYILENGILPLEASANELLVGLRNLGRLSDVRRFAEEMLNRRILI-YEVTMHKLKKAFYNESR  445 (463)
Q Consensus       377 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~  445 (463)
                      ++|.+.|++..+.. +-+..++..+..+|.+.|++++|.+.|++..+..  | +...|..+...+.+.|+
T Consensus       322 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         322 EEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence            99999999998743 2246678889999999999999999999988653  4 46678888888877664
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure