Citrus Sinensis ID: 012445

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYGWRPDI
ccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEcccccEEEEEEEEcccccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEccccEEEEEEEEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccEEEcccccccEEEEEEEEccccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccc
cHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHccccccHHHHHccccccccccccccccccccccccHHHccccccEEEEcccccEEEEEccccccEEEEEEEcccHHHcccccccHHHHHHHcccccEccccHHHHHHHHHHccccEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHHcEcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHccccccHHHcccccHHHHHHHHHHHccHHHEEEEEEcccHHHHHHHHHHHcccccccccccccccccccccEEEEcccccccEEEEEEEEccccccccccHHHHHHHHHHHcEEEcccccccccccccHHHHHcccccccEEEEEEEEEEccccEEEEEEEEEcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHc
MYRNAASRLRALKGhvrcrvpsatrfasssavastssssgglfswltgersssspsldfplpgvslppslpdyvepgktkistlpngvkiasetsvspvASISLYVGcgsiyespisfgTTHLLERMAFRSTRNRSHLRIVREVEAIggnvqasasreqmGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAgysgalanpllapesAINRLNSTLLEEFvaenytgprmvlaasgvehdqlvsvaepllsdlpsihpreepksvytggdyrcqadsgdqLTHFVLAFelpggwhkdkdaMTLTVLQMLLggggsfsaggpgkgmYSRLYRRVLnefpqvqsfsafsniynhsgmfgiqgttgsdFVSKAIDLAARELIsvatpgevdqVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVltygerygwrpdi
myrnaasrlralkghvrcrvpsatrfasssavastssssgglFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVeaiggnvqasasreqMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPllsdlpsihpreepksvytGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISvatpgevdqvqldRAKQSTKSAIlmnlesrmvvsedigrqvltygerygwrpdi
MYRNAASRLRALKGHVRCRVPsatrfasssavastssssgglfsWLTGERsssspsLDFplpgvslppslpDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLggggsfsaggpgkgMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYGWRPDI
****************************************************************************************KIA**TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK***********SLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPL***************VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEV**************AILMNLESRMVVSEDIGRQVLTYGERYGW****
******************************************************************************TKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLL******************GDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAG****GMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYGW****
********LRALKGHVRCRVPSAT****************GLFSWL************FPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYGWRPDI
MYRNAASRLRALKGHVRCRVPSATRFASSSAV*******************SSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYGW**DI
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYGWRPDI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
P29677504 Mitochondrial-processing N/A no 0.971 0.892 0.725 0.0
Q9ZU25503 Probable mitochondrial-pr yes no 0.974 0.896 0.662 1e-164
O04308499 Probable mitochondrial-pr no no 0.965 0.895 0.651 1e-146
P11914482 Mitochondrial-processing yes no 0.805 0.773 0.369 4e-50
P97997474 Mitochondrial-processing N/A no 0.803 0.784 0.333 2e-47
P22695453 Cytochrome b-c1 complex s yes no 0.781 0.799 0.335 6e-47
Q3SZ71490 Mitochondrial-processing yes no 0.799 0.755 0.314 5e-46
Q42290531 Probable mitochondrial-pr no no 0.796 0.694 0.308 3e-45
O75439489 Mitochondrial-processing no no 0.799 0.756 0.306 4e-45
P32551452 Cytochrome b-c1 complex s yes no 0.829 0.849 0.311 5e-45
>sp|P29677|MPPA_SOLTU Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1 Back     alignment and function desciption
 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/456 (72%), Positives = 385/456 (84%), Gaps = 6/456 (1%)

Query: 1   MYRNAASRLRALKGHVRCRVPSATRFASSSAVASTSSSSGGLFSWLTGERSSSSPSLDFP 60
           MYR A+SRL +LK     RV   TRF+SS+AVA+    SGGLFSW+TG+ SSS   LDFP
Sbjct: 1   MYRCASSRLSSLKARQGNRV--LTRFSSSAAVAT--KPSGGLFSWITGDTSSSVTPLDFP 56

Query: 61  LPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGT 120
           L  V L P LPDYVEP KT+I+TL NG+K+ASE SV+P ASI LYV CGSIYE+P S+G 
Sbjct: 57  LNDVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGA 116

Query: 121 THLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180
           THLLERMAF+ST NRSHLRIVRE+EAIGGNV ASASRE M Y++DALKTYVP+MVE+L D
Sbjct: 117 THLLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLAD 176

Query: 181 CVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240
           CVRNP FLDWEV EQL KVK+EISE S NPQ LLLEA+HSAGY+G   N L+A E+ INR
Sbjct: 177 CVRNPAFLDWEVKEQLEKVKAEISEYSKNPQHLLLEAVHSAGYAGPYGNSLMATEATINR 236

Query: 241 LNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDY 300
           LNST+LEEFVAENYT PRMVLAASGVEH++ + VAEPLLSDLP +   EEPK VY GGDY
Sbjct: 237 LNSTVLEEFVAENYTAPRMVLAASGVEHEEFLKVAEPLLSDLPKVATIEEPKPVYVGGDY 296

Query: 301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYR 360
           RCQAD+  ++THF LAFE+PGGW  +K++MTLTVLQML+GGGGSFSAGGPGKGMYSRLY 
Sbjct: 297 RCQADA--EMTHFALAFEVPGGWMSEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYL 354

Query: 361 RVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQ 420
           RVLN++PQ+ +FSAFS+IYN++G+FGIQGTT SDF  +A+D+A +ELI+VA P EVDQVQ
Sbjct: 355 RVLNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQ 414

Query: 421 LDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 456
           L+RAKQ+TKSAILMNLESRMV SEDIGRQ+LTYGER
Sbjct: 415 LNRAKQATKSAILMNLESRMVASEDIGRQLLTYGER 450
This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. Mediate formation of the complex between cytochromes c and c1.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 0EC: .EC: 2EC: .EC: 2
>sp|Q9ZU25|MPPA1_ARATH Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1 Back     alignment and function description
>sp|O04308|MPPA2_ARATH Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=MPPA2 PE=1 SV=1 Back     alignment and function description
>sp|P11914|MPPA_YEAST Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAS2 PE=1 SV=1 Back     alignment and function description
>sp|P97997|MPPA_BLAEM Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1 Back     alignment and function description
>sp|P22695|QCR2_HUMAN Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3 Back     alignment and function description
>sp|Q3SZ71|MPPB_BOVIN Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1 Back     alignment and function description
>sp|Q42290|MPPB_ARATH Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2 Back     alignment and function description
>sp|O75439|MPPB_HUMAN Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2 Back     alignment and function description
>sp|P32551|QCR2_RAT Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus norvegicus GN=Uqcrc2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
356513189511 PREDICTED: mitochondrial-processing pept 0.978 0.886 0.806 0.0
356523720509 PREDICTED: mitochondrial-processing pept 0.978 0.889 0.795 0.0
356513191508 PREDICTED: mitochondrial-processing pept 0.980 0.893 0.805 0.0
225445041506 PREDICTED: mitochondrial-processing pept 0.976 0.893 0.800 0.0
357520795510 Mitochondrial-processing peptidase subun 0.980 0.890 0.783 0.0
255546263507 mitochondrial processing peptidase alpha 0.978 0.893 0.785 0.0
217075747510 unknown [Medicago truncatula] gi|3885152 0.980 0.890 0.777 0.0
225442426506 PREDICTED: mitochondrial-processing pept 0.976 0.893 0.782 0.0
449487989505 PREDICTED: mitochondrial-processing pept 0.974 0.893 0.765 0.0
449446550505 PREDICTED: mitochondrial-processing pept 0.974 0.893 0.763 0.0
>gi|356513189|ref|XP_003525296.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 1 [Glycine max] Back     alignment and taxonomy information
 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/461 (80%), Positives = 410/461 (88%), Gaps = 8/461 (1%)

Query: 1   MYRNAASRLRALKGHVRC----RVPSATRFASSSAVASTSSSS-GGLFSWLTGERSSSSP 55
           MYRNAASRLRA+K    C    RVP++ RFASS A   +SSS  GGLF WLTG+R+SS P
Sbjct: 1   MYRNAASRLRAIKAR-SCSSSSRVPASARFASSVATQQSSSSGLGGLFGWLTGDRTSSLP 59

Query: 56  SLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESP 115
           SL FPLPGV+LPP LPDYV PGKT I+TLPNG+K+ASETS SP ASI LYV CGSIYESP
Sbjct: 60  SLGFPLPGVTLPPPLPDYVAPGKTIITTLPNGLKVASETSPSPTASIGLYVDCGSIYESP 119

Query: 116 ISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMV 175
           ISFG THLLERMAF++TRNRSH R+VREVEAIGGNVQASASREQMGY+FDALKTYVPEMV
Sbjct: 120 ISFGATHLLERMAFKTTRNRSHFRVVREVEAIGGNVQASASREQMGYTFDALKTYVPEMV 179

Query: 176 ELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPE 235
           ELL+DCVRNPVFLDWEVNEQL KVK+EI E S NPQ LLLEAIHSAG+SGALANPLLA E
Sbjct: 180 ELLVDCVRNPVFLDWEVNEQLLKVKAEIGEASKNPQDLLLEAIHSAGFSGALANPLLASE 239

Query: 236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVY 295
           SA+NRLNST+LEEFVAENYT PR+VLAASGVEH++L+S+AEPLLSDLPS+   EEPKSVY
Sbjct: 240 SAVNRLNSTILEEFVAENYTAPRIVLAASGVEHEELLSIAEPLLSDLPSVPRPEEPKSVY 299

Query: 296 TGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY 355
           TGGDYRCQ +SG   THF LAFELPGGWHK KDAM LTVLQMLLGGGGSFSAGGPGKGMY
Sbjct: 300 TGGDYRCQKESGR--THFALAFELPGGWHKLKDAMVLTVLQMLLGGGGSFSAGGPGKGMY 357

Query: 356 SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGE 415
           SRLY+ VLNE+PQV   SAF+NIYN +G+FGIQ TTGSDFVSKAID+AA E+++VATPG+
Sbjct: 358 SRLYQNVLNEYPQVHEISAFNNIYNDTGIFGIQVTTGSDFVSKAIDIAANEILAVATPGQ 417

Query: 416 VDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 456
           VDQVQLDRAKQ+TKSAILMNLESRMVVSEDIGRQ+LTYGER
Sbjct: 418 VDQVQLDRAKQATKSAILMNLESRMVVSEDIGRQILTYGER 458

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356523720|ref|XP_003530483.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356513191|ref|XP_003525297.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|225445041|ref|XP_002283310.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297738729|emb|CBI27974.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357520795|ref|XP_003630686.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] gi|355524708|gb|AET05162.1| Mitochondrial-processing peptidase subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|255546263|ref|XP_002514191.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] gi|223546647|gb|EEF48145.1| mitochondrial processing peptidase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|217075747|gb|ACJ86233.1| unknown [Medicago truncatula] gi|388515299|gb|AFK45711.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225442426|ref|XP_002283426.1| PREDICTED: mitochondrial-processing peptidase subunit alpha [Vitis vinifera] gi|297743169|emb|CBI36036.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449487989|ref|XP_004157901.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449446550|ref|XP_004141034.1| PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
TAIR|locus:2034096503 AT1G51980 [Arabidopsis thalian 0.974 0.896 0.581 3.8e-133
TAIR|locus:2088309499 MPPalpha "mitochondrial proces 0.965 0.895 0.559 1.1e-126
ASPGD|ASPL0000062345 570 AN1104 [Emericella nidulans (t 0.475 0.385 0.339 2.1e-56
SGD|S000001066482 MAS2 "Larger subunit of the mi 0.805 0.773 0.338 5.8e-50
GENEDB_PFALCIPARUM|PFE1155c534 PFE1155c "mitochondrial proces 0.792 0.687 0.347 2.5e-49
UNIPROTKB|Q8I3N3534 PFE1155c "Mitochondrial proces 0.792 0.687 0.347 2.5e-49
ZFIN|ZDB-GENE-040718-405460 uqcrc2a "ubiquinol-cytochrome 0.803 0.808 0.325 3e-46
UNIPROTKB|P22695453 UQCRC2 "Cytochrome b-c1 comple 0.801 0.818 0.323 2.1e-45
UNIPROTKB|F1P582457 UQCRC2 "Uncharacterized protei 0.790 0.800 0.322 3.4e-45
ZFIN|ZDB-GENE-030131-5809517 pmpca "peptidase (mitochondria 0.816 0.731 0.309 3.4e-45
TAIR|locus:2034096 AT1G51980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
 Identities = 265/456 (58%), Positives = 324/456 (71%)

Query:     1 MYRNAASRLRALKGHVRCRVPXXXXXXXXXXXXXXXXXXXXXXXWLTGERXXXXXXLDFX 60
             MYR AASR RALKG V  R                         WL+G        LD  
Sbjct:     1 MYRTAASRARALKG-VLTRSLRPARYASSSAVAETSSSTPAYLSWLSGGSRAALTSLDMP 59

Query:    61 XXXXXXXXXXXDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGT 120
                        D VEP K +I+TLPNG+KIASET+ +P ASI LYV CGSIYE+P   G 
Sbjct:    60 LQGVSLPPPLADKVEPSKLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGA 119

Query:   121 THLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLID 180
             THLLERMAF+ST NR+H R+VRE+EAIGGN  ASASREQM Y+ DALKTYVPEMVE+LID
Sbjct:   120 THLLERMAFKSTLNRTHFRLVREIEAIGGNTSASASREQMSYTIDALKTYVPEMVEVLID 179

Query:   181 CVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINR 240
              VRNP FLDWEVNE+L K+K EI+E++ NP   LLEAIHSAGYSG LA+PL APESA++R
Sbjct:   180 SVRNPAFLDWEVNEELRKMKVEIAELAKNPMGFLLEAIHSAGYSGPLASPLYAPESALDR 239

Query:   241 LNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDY 300
             LN  LLEEF+ EN+T  RMVLAASGVEH++L+ VAEPL SDLP++ P+  PKS Y GGD+
Sbjct:   240 LNGELLEEFMTENFTAARMVLAASGVEHEELLKVAEPLTSDLPNVPPQLAPKSQYVGGDF 299

Query:   301 RCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYR 360
             R    +G + THF +AFE+PG W+ +K+A+T TVLQML+              M+S LYR
Sbjct:   300 R--QHTGGEATHFAVAFEVPG-WNNEKEAVTATVLQMLMGGGGSFSAGGPGKGMHSWLYR 356

Query:   361 RVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQ 420
             RVLNE+ +VQS +AF++I+N +G+FGI G +   F +KAI+LAA+EL  VA  G+V+Q  
Sbjct:   357 RVLNEYQEVQSCTAFTSIFNDTGLFGIYGCSSPQFAAKAIELAAKELKDVAG-GKVNQAH 415

Query:   421 LDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 456
             LDRAK +TKSA+LMNLESRM+ +EDIGRQ+LTYGER
Sbjct:   416 LDRAKAATKSAVLMNLESRMIAAEDIGRQILTYGER 451
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0005524 "ATP binding" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0005750 "mitochondrial respiratory chain complex III" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0009060 "aerobic respiration" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2088309 MPPalpha "mitochondrial processing peptidase alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000062345 AN1104 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000001066 MAS2 "Larger subunit of the mitochondrial processing protease (MPP)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFE1155c PFE1155c "mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8I3N3 PFE1155c "Mitochondrial processing peptidase alpha subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-405 uqcrc2a "ubiquinol-cytochrome c reductase core protein IIa" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P22695 UQCRC2 "Cytochrome b-c1 complex subunit 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P582 UQCRC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5809 pmpca "peptidase (mitochondrial processing) alpha" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9DB77QCR2_MOUSENo assigned EC number0.31180.81420.8322yesno
P32551QCR2_RATNo assigned EC number0.31130.82930.8495yesno
P29677MPPA_SOLTU1, ., 1, 0, ., 2, ., 20.72580.97190.8928N/Ano
Q4W6B5MPPB_DICDI3, ., 4, ., 2, 4, ., 6, 40.31060.81420.8038yesno
Q9ZU25MPPA1_ARATH3, ., 4, ., 2, 4, ., 6, 40.66220.97400.8966yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.24.640.991
3rd Layer3.4.240.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016635001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (506 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021058001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (523 aa)
  ••••••0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 1e-51
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 2e-42
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 2e-31
COG1026978 COG1026, COG1026, Predicted Zn-dependent peptidase 0.003
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information 
 Score =  179 bits (457), Expect = 1e-51
 Identities = 94/395 (23%), Positives = 155/395 (39%), Gaps = 33/395 (8%)

Query: 78  KTKISTLPNGVKIAS-ETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS 136
             ++ TLPNG+++ +     +P  S+ ++V  GS  E     G  H LE MAF+ T    
Sbjct: 16  GLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLP 75

Query: 137 HLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL 196
              +    E +GG + A  S +   Y    L   + + ++LL D + NP F + EV  + 
Sbjct: 76  SAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREK 135

Query: 197 TKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYT 255
             +  EI    ++P  L  E +  A Y    L  P+L  E +I  +    L++F  + Y 
Sbjct: 136 GVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWYQ 195

Query: 256 GPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRC-----QADSGDQ 309
              MVL   G V+ +++V + E    DLP   P  +       G  R            +
Sbjct: 196 PDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDLE 255

Query: 310 LTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV 369
                L +  P  +    D   L +L  LLGG           G  SRL++ +  +    
Sbjct: 256 QAWLALGYPGP-DYDSPDDYAALLLLNGLLGG-----------GFSSRLFQELREKRGLA 303

Query: 370 QSFSAFSNIYNHSGMFGIQGTTG-------SDFVSKAIDLAARELISVATPGEVDQVQLD 422
            S S+FS+  + SG+F I   T        ++ V + +    + L    T  E+D     
Sbjct: 304 YSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELD----- 358

Query: 423 RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERY 457
            A +     +L+          ++  Q L  G   
Sbjct: 359 -AAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSL 392

Length = 438
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
KOG2067472 consensus Mitochondrial processing peptidase, alph 100.0
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PRK15101 961 protease3; Provisional 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 100.0
PRK15101961 protease3; Provisional 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 100.0
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.97
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.89
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.89
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.89
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.87
KOG0959974 consensus N-arginine dibasic convertase NRD1 and r 99.78
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 99.75
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 99.73
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.71
KOG2019998 consensus Metalloendoprotease HMP1 (insulinase sup 99.62
PTZ004321119 falcilysin; Provisional 99.6
KOG09611022 consensus Predicted Zn2+-dependent endopeptidase, 98.94
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 98.34
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 98.29
PHA03081 595 putative metalloprotease; Provisional 98.15
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 96.48
KOG0960467 consensus Mitochondrial processing peptidase, beta 95.83
TIGR02110696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 95.69
KOG2067472 consensus Mitochondrial processing peptidase, alph 94.6
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 92.38
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 87.33
PF0985131 SHOCT: Short C-terminal domain; InterPro: IPR01864 84.22
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 80.67
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-80  Score=575.68  Aligned_cols=383  Identities=50%  Similarity=0.757  Sum_probs=365.4

Q ss_pred             CCCceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeee
Q 012445           75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS  154 (463)
Q Consensus        75 ~~~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~  154 (463)
                      ++..++.++|+||+||++++++++.+.++++|++|+++|.+...|++|++|+|+|++|.+++..++.+.||.+||+++++
T Consensus        21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq  100 (472)
T KOG2067|consen   21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ  100 (472)
T ss_pred             ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCC
Q 012445          155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLA  233 (463)
Q Consensus       155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~  233 (463)
                      ++++.+.|..++.+++++.++++|+|.+++|+|++|+++.++..++-|+.+...+|+..+.+.+|.++| +++++.|.++
T Consensus       101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c  180 (472)
T KOG2067|consen  101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC  180 (472)
T ss_pred             ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 8899999999


Q ss_pred             ChHhhccCCHHHHHHHHHhhccCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCC--CCCCCCCCCCCCceEEecCC-----
Q 012445          234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIH--PREEPKSVYTGGDYRCQADS-----  306 (463)
Q Consensus       234 ~~~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~l~~~~~~~lp~~~--~~~~~~~~~~~~~~~~~~~~-----  306 (463)
                      +++.|++|+.+.|.+|.+++|+|.||+++.|||+||++++++++||++||+..  ....++.+|+||...+..+.     
T Consensus       181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~  260 (472)
T KOG2067|consen  181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG  260 (472)
T ss_pred             ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence            99999999999999999999999999999999999999999999999999853  33456679999976665442     


Q ss_pred             CCCceEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEE
Q 012445          307 GDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG  386 (463)
Q Consensus       307 ~~~~~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~  386 (463)
                      +..-+||+++|++++  ++++|.+++.+|+.+||||||||||||||||+||||.+|.++++|+|++.|++..|.|+|+|+
T Consensus       261 g~EltHv~lg~Eg~~--~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfg  338 (472)
T KOG2067|consen  261 GPELTHVVLGFEGCS--WNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFG  338 (472)
T ss_pred             ccceeeeeEeeccCC--CCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeE
Confidence            115799999999996  588899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCcccHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCccCCCCC
Q 012445          387 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYGWRP  461 (463)
Q Consensus       387 i~~~~~~~~~~~~i~~~~~~l~~l~~~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~~~~~~  461 (463)
                      |+.+++|+++.+++..+.+|+..+.. | ++++|++|||.++++.++||+|++...+||+|||++++|.|++++|
T Consensus       339 i~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~rk~p~e  411 (472)
T KOG2067|consen  339 IYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGERKPPDE  411 (472)
T ss_pred             EeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCcCCHHH
Confidence            99999999999999999999999987 5 9999999999999999999999999999999999999999999875

>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
1hr6_A475 Yeast Mitochondrial Processing Peptidase Length = 4 3e-49
3cwb_B441 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 6e-46
3bcc_B422 Stigmatellin And Antimycin Bound Cytochrome Bc1 Com 9e-45
1bcc_B422 Cytochrome Bc1 Complex From Chicken Length = 422 2e-44
1bcc_A446 Cytochrome Bc1 Complex From Chicken Length = 446 4e-44
1qcr_B423 Crystal Structure Of Bovine Mitochondrial Cytochrom 4e-41
1sqb_B453 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 4e-41
1bgy_B439 Cytochrome Bc1 Complex From Bovine Length = 439 4e-41
1sqb_A480 Crystal Structure Analysis Of Bovine Bc1 With Azoxy 2e-39
1bgy_A446 Cytochrome Bc1 Complex From Bovine Length = 446 2e-39
1qcr_A446 Crystal Structure Of Bovine Mitochondrial Cytochrom 2e-39
3cwb_A446 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 4e-39
1hr6_B443 Yeast Mitochondrial Processing Peptidase Length = 4 4e-32
1hr7_B443 Yeast Mitochondrial Processing Peptidase Beta-E73q 1e-31
3hdi_A421 Crystal Structure Of Bacillus Halodurans Metallo Pe 1e-27
1ezv_B352 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 5e-12
3amj_C437 The Crystal Structure Of The Heterodimer Of M16b Pe 1e-10
3ami_A445 The Crystal Structure Of The M16b Metallopeptidase 1e-10
1ezv_A430 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 3e-05
1kb9_A431 Yeast Cytochrome Bc1 Complex Length = 431 2e-04
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase Length = 475 Back     alignment and structure 
Iteration: 1

 Score =  192 bits (488), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 208/387 (53%), Gaps = 14/387 (3%)
Query: 80  KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
           K+S+L NG+K+A+  +    +++ LY+  GS +E     G TH+L+R+AF+ST +     
Sbjct: 7   KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA 66
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199
           +   +E +GGN Q ++SRE + Y        V +M++L+ + VR P   + E+ EQ    
Sbjct: 67  MAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSA 126
Query: 200 KSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPR 258
           + EI EV   P+ +L E +H+A YSG  L +PL+ P   I  ++   L ++  + YT   
Sbjct: 127 EYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPEN 186
Query: 259 MVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADS---GD--QLTH 312
            V A  GV H++ + +    L D  S HP    K + YTGG+  C   +   G+  +L H
Sbjct: 187 TVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGE-SCIPPAPVFGNLPELFH 245
Query: 313 FVLAFELPGGWHKDK-DAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 371
             + FE   G   D  D   L  LQ LL              MYSRLY  VLN++  V++
Sbjct: 246 IQIGFE---GLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVEN 302
Query: 372 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGE--VDQVQLDRAKQSTK 429
             AF++ Y+ SG+FGI  +       +A+++ A+++ +     +  + + ++ RAK   K
Sbjct: 303 CVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLK 362
Query: 430 SAILMNLESRMVVSEDIGRQVLTYGER 456
           S++LMNLES++V  ED+GRQVL +G +
Sbjct: 363 SSLLMNLESKLVELEDMGRQVLMHGRK 389
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 441 Back     alignment and structure
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken Length = 422 Back     alignment and structure
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken Length = 446 Back     alignment and structure
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 423 Back     alignment and structure
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 453 Back     alignment and structure
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine Length = 439 Back     alignment and structure
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin Length = 480 Back     alignment and structure
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine Length = 446 Back     alignment and structure
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 446 Back     alignment and structure
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 446 Back     alignment and structure
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443 Back     alignment and structure
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant Length = 443 Back     alignment and structure
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase Length = 421 Back     alignment and structure
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 352 Back     alignment and structure
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase From Sphingomonas Sp. A1 Length = 437 Back     alignment and structure
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit From Sphingomonas Sp. A1 Length = 445 Back     alignment and structure
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 430 Back     alignment and structure
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex Length = 431 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 1e-157
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 1e-156
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 1e-142
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 1e-140
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 1e-125
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 1e-102
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 1e-98
3eoq_A406 Putative zinc protease; two similar domains of bet 4e-82
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 8e-48
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 2e-47
3gwb_A434 Peptidase M16 inactive domain family protein; pept 8e-44
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 2e-32
3go9_A492 Insulinase family protease; IDP00573, structural g 3e-30
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 3e-18
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 1e-16
3ih6_A197 Putative zinc protease; bordetella pertussis toham 1e-09
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
 Score =  452 bits (1164), Expect = e-157
 Identities = 117/404 (28%), Positives = 190/404 (47%), Gaps = 11/404 (2%)

Query: 54  SPSLDFPLPGVSLPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYE 113
           S  +   +     P  +P    P   + + LPNG+ IAS  + +P + I L++  GS YE
Sbjct: 1   SLKVAPKVKATEAPAGVPP--HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYE 58

Query: 114 SPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPE 173
           +  + GT+HLL   +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  
Sbjct: 59  NSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDI 118

Query: 174 MVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLA 233
           ++E L++    P F  WEV     +++ + +    NPQ+ ++E +H+A Y  ALAN L  
Sbjct: 119 LMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYC 178

Query: 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKS 293
           P+  I ++    L ++V  ++T  RM L   GV H  L  VAE  L+    +       +
Sbjct: 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLNIRGGLGLSGAK-A 237

Query: 294 VYTGGDYRCQADSGDQLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG 353
            Y GG+ R Q      L H  L  E         +A   +VLQ +LG G        G  
Sbjct: 238 KYHGGEIREQNGD--SLVHAALVAE--SAAIGSAEANAFSVLQHVLGAG---PHVKRGSN 290

Query: 354 MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATP 413
             S LY+ V     Q    SAF+  Y+ SG+FG    + +      I  A  ++ ++A  
Sbjct: 291 ATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ- 349

Query: 414 GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERY 457
           G +    +  AK   K+  LM++ES     +++G Q L  G   
Sbjct: 350 GNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYT 393
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Length = 197 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 100.0
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3go9_A492 Insulinase family protease; IDP00573, structural g 100.0
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 100.0
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 100.0
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 100.0
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 99.97
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 99.97
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.91
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.75
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.21
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 97.84
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 97.83
3eoq_A406 Putative zinc protease; two similar domains of bet 97.82
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 97.79
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 97.75
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 97.66
3gwb_A434 Peptidase M16 inactive domain family protein; pept 97.59
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 97.58
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 97.43
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.19
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 96.9
3go9_A492 Insulinase family protease; IDP00573, structural g 96.43
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 93.05
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
Probab=100.00  E-value=4.3e-58  Score=473.32  Aligned_cols=379  Identities=36%  Similarity=0.567  Sum_probs=349.1

Q ss_pred             CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeec
Q 012445           77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS  156 (463)
Q Consensus        77 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~  156 (463)
                      +.++.++|+||++|++.+.+.+.+++++++++|+++|++...|++||++||+|+||.+++..++.+.++.+|++++++++
T Consensus         4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~   83 (475)
T 1hr6_A            4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS   83 (475)
T ss_dssp             TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence            57899999999999988888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 012445          157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGY-SGALANPLLAPE  235 (463)
Q Consensus       157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~  235 (463)
                      .++++|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|+++..++|..++.+.++..+| ++|++++..|+.
T Consensus        84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~  163 (475)
T 1hr6_A           84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR  163 (475)
T ss_dssp             SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred             cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence            9999999999999999999999999999999999999999999999999889999999999999999 999999999999


Q ss_pred             HhhccCCHHHHHHHHHhhccCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCCCC-CCCCCCCCCCceEEecC----CCCCc
Q 012445          236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQAD----SGDQL  310 (463)
Q Consensus       236 ~~l~~i~~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~l~~~~~~~lp~~~~~-~~~~~~~~~~~~~~~~~----~~~~~  310 (463)
                      +.|++++.++|++||+++|.|++|+++++|+++++++++++++|+.||....+ ..+.+.+.++..++...    .+.++
T Consensus       164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (475)
T 1hr6_A          164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL  243 (475)
T ss_dssp             GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred             HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence            99999999999999999999999999999999999999999999999865443 22233444544444421    23378


Q ss_pred             eEEEEEeecCCCCCCCcchHHHHHHHHhhCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecccCCcceEEEEEE
Q 012445          311 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT  390 (463)
Q Consensus       311 ~~v~l~f~~~~~~~~~~~~~~~~vl~~lL~g~~~fs~g~~g~g~~s~L~~~lR~~~~~~Y~~~a~~~~~~~~~~~~i~~~  390 (463)
                      +++.++|++++  .++++.+++.|++.||||+++||+|||||||+++||++||++.|++|+++++...+.+.|.|.|++.
T Consensus       244 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~  321 (475)
T 1hr6_A          244 FHIQIGFEGLP--IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS  321 (475)
T ss_dssp             EEEEEEEECCC--TTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred             eEEEEEEecCC--CCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence            99999999875  5778999999999999999999999999999999999999999999999999888888899999999


Q ss_pred             eCcccHHHHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhcCccCC
Q 012445          391 TGSDFVSKAIDLAARELISVAT---PGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERYG  458 (463)
Q Consensus       391 ~~~~~~~~~i~~~~~~l~~l~~---~g~vt~~el~~aK~~~~~~~~~~~~s~~~~~~~l~~~~l~~g~~~~  458 (463)
                      ++|+++.++++.+.+++.++.+   .| +|++||+++|+.++.++.+..++...+++.++++++.+|...+
T Consensus       322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~-~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  391 (475)
T 1hr6_A          322 CIPQAAPQAVEVIAQQMYNTFANKDLR-LTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIP  391 (475)
T ss_dssp             ECGGGHHHHHHHHHHHHHTTTTCTTSC-CCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCC
T ss_pred             eCHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC
Confidence            9999999999999999999987   66 9999999999999999999999999999999999888887654
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 463
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 5e-36
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 4e-29
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 2e-28
d1hr6a2237 d.185.1.1 (A:234-470) Mitochondrial processing pep 2e-26
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 7e-25
d1ppjb2204 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 3e-23
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 4e-23
d1hr6b2217 d.185.1.1 (B:246-462) Mitochondrial processing pep 2e-22
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 7e-22
d1ppja2209 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1e-21
d3cx5a2218 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1e-20
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 1e-16
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 6e-14
d3cx5b2150 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 5e-13
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  130 bits (328), Expect = 5e-36
 Identities = 71/215 (33%), Positives = 118/215 (54%), Gaps = 6/215 (2%)

Query: 66  LPPSLPDYVEPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLE 125
           +PP       P   + + LPNG+ IAS  + +P + I L++  GS YE+  + GT+HLL 
Sbjct: 1   VPPH------PQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLR 54

Query: 126 RMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNP 185
             +  +T+  S  +I R +EA+GG +  +++RE M Y+ + L+  V  ++E L++    P
Sbjct: 55  LASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAP 114

Query: 186 VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTL 245
            F  WEV     +++ + +    NPQ+ ++E +H+A Y  ALAN L  P+  I ++    
Sbjct: 115 EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVE 174

Query: 246 LEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLS 280
           L ++V  ++T  RM L   GV H  L  VAE  L+
Sbjct: 175 LHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN 209
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 204 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 217 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 209 Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 218 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 100.0
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.97
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.95
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.92
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.92
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.91
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.88
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.81
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.77
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.36
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 99.17
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 99.14
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 98.79
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.5
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.33
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.33
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.25
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.02
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 97.94
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 97.66
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 97.62
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.14
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 95.87
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 95.74
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 94.44
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 93.95
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 93.84
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 92.85
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 91.01
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 89.8
d1q2la3240 Protease III {Escherichia coli [TaxId: 562]} 88.23
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 84.53
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 81.01
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Cytochrome bc1 core subunit 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.8e-37  Score=280.13  Aligned_cols=209  Identities=33%  Similarity=0.582  Sum_probs=200.3

Q ss_pred             CceEEEEcCCCcEEEEecCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHcCCeeeeeec
Q 012445           77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS  156 (463)
Q Consensus        77 ~~~~~~~L~NG~~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~  156 (463)
                      ..++..+|+||++|++.+..+|.+++++++++|+++|++...|++||++||+|+|+.+++..++.+.++..|+.++++++
T Consensus         6 ~~~~~~~L~NGl~v~~~~~~~p~v~i~~~v~~Gs~~e~~~~~G~ahlle~l~~~gt~~~s~~~i~~~~~~~G~~~n~~t~   85 (219)
T d1ppjb1           6 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTST   85 (219)
T ss_dssp             CCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHCTTSCBSSSCHHHHHHHHHHTTCEEEEEEC
T ss_pred             CceeEEECCCCCEEEEEeCCCCEEEEEEEEcccccccCCCCccHHHHHHHHHhhccccchhHHHHHHHHHhccchhhhhh
Confidence            46799999999999988888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeEEEEEccCCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChH
Q 012445          157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPES  236 (463)
Q Consensus       157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~~~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~  236 (463)
                      ++.+.|++++++++++.++++|.+.+.+|.|++++++++++.+..++.....+|..++.+.++..+|.++++++..|+.+
T Consensus        86 ~d~t~~~~~~~~~~~~~~l~ll~~~l~~p~~~~~~~~~~~~~i~~e~~~~~~~p~~~~~~~l~~~~f~~~~~~~~~g~~~  165 (219)
T d1ppjb1          86 RENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDY  165 (219)
T ss_dssp             SSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHTHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCCGG
T ss_pred             hheeeeeeeeecchhHHHHHHHHHhccCCcchhhhhhhhhHHHHHHHHHHhhccchHHHHHHHhhcccccccCCCcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999996689999999999


Q ss_pred             hhccCCHHHHHHHHHhhccCCCeEEEEeCCCHHHHHHHHHhhhCCCCCCC
Q 012445          237 AINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIH  286 (463)
Q Consensus       237 ~l~~i~~~~l~~f~~~~~~~~~~~l~i~G~~~~~l~~l~~~~~~~lp~~~  286 (463)
                      +|++++.++|++||+++|.|+||+++++|+++++++++++++|+ ++++.
T Consensus       166 ~l~~it~~~l~~f~~~~y~p~n~~lv~~Gv~~~~l~~l~e~~~~-~~~g~  214 (219)
T d1ppjb1         166 RIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGL  214 (219)
T ss_dssp             GTTTCCHHHHHHHHHHHSCGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC
T ss_pred             HHhcCCHHHHHHHHHHhCCcccEEEEEEcCCHHHHHHHHHHhcC-CCCCC
Confidence            99999999999999999999999999999999999999999985 55543
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure