Citrus Sinensis ID: 012464

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MCDLMQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQRAKELTQSSEEEASLLS
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHEEHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHcHHHccccHHHHHEHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccc
MCDLMQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLamgmepicsqaygakkgtiLSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRtqninkpltIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRtalkpwdwqavdsCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCgllsdpqasVSAMGILIQTTGLLyvfpnslnqgLSTLVGQalgaeqpgraqrTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALpilglcelgncpqtaACGIllgsarpklgvCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQRAKELTQSSEEEASLLS
MCDLMQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQRAKEltqsseeeaslls
MCDLMQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTlsiliviifpisilWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWsllslmlpsllsiclEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQRAKELTQSSEEEASLLS
********EELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQ*******************
****MQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQR****************
MCDLMQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQA******************
MCDLMQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQRAKELTQSS********
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
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MCDLMQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQRAKELTQSSEEEASLLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
Q8GXM8476 MATE efflux family protei no no 0.967 0.941 0.305 1e-52
A4IIS8574 Multidrug and toxin extru yes no 0.907 0.731 0.316 1e-52
Q9SIA5476 MATE efflux family protei no no 0.961 0.934 0.305 2e-52
Q9SIA3476 MATE efflux family protei no no 0.967 0.941 0.309 8e-52
Q9SIA4476 MATE efflux family protei no no 0.963 0.936 0.302 8e-52
Q8RWF5483 MATE efflux family protei no no 0.954 0.915 0.300 3e-51
Q9SIA1477 MATE efflux family protei no no 0.954 0.926 0.291 2e-49
Q5I0E9566 Multidrug and toxin extru yes no 0.933 0.763 0.297 2e-48
Q8K0H1567 Multidrug and toxin extru yes no 0.930 0.760 0.299 2e-48
A1L1P9590 Multidrug and toxin extru yes no 0.969 0.761 0.286 4e-48
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function desciption
 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 139/455 (30%), Positives = 227/455 (49%), Gaps = 7/455 (1%)

Query: 6   QVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVL 65
           QV  EL  + ++A P+A   +      +IS++  GH+G++ELAG +L+    N++G+S++
Sbjct: 23  QVTVELKKVSRLAAPMATVTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGFSIM 82

Query: 66  KGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQA 125
            GL   +E +C QAYGA++   +       ++  I I F ISILW+ IE +L++LGQE  
Sbjct: 83  FGLVGALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEPD 142

Query: 126 IISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVL 185
           I  VA  Y ++ +P L A A+  PL  FL  Q +   L  +A   L+FHIA+   L   L
Sbjct: 143 ISRVAGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFAL 202

Query: 186 NLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVD---SCNQGWWSLLSLMLP 242
            LG  G A+A +   +   + L  ++ F  +  K   + + D   S  Q         +P
Sbjct: 203 GLGSNGAAIAISLSFWFYAVILSCHVRFFSSCEKTRGFVSNDFMSSIKQ----YFQYGVP 258

Query: 243 SLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQA 302
           S   ICLEWW +E++++  GLL +P+   S + I +    L YV P+ +   +ST V   
Sbjct: 259 SAGLICLEWWLFELLILCSGLLPNPKLETSVLSICLTIGTLHYVIPSGVAAAVSTRVSNK 318

Query: 303 LGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILG 362
           LGA  P  A+ + + G+ +  V     S   F  R+  G  +++   V+       P+L 
Sbjct: 319 LGAGNPQVARVSVLAGLCLWLVESAFFSTLLFTCRNIIGYTFSNSKEVVDYVADISPLLC 378

Query: 363 LCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLA 422
           L  + +       G+  G     +G  IN  A+Y++G PV   +AF  +    GLW G+ 
Sbjct: 379 LSFILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGVM 438

Query: 423 AAQASCVVMMIITLFCTDWKLQAQRAKELTQSSEE 457
              A    ++ I     +WK QA++A++   S+E 
Sbjct: 439 VGSAVQATLLAIVTASMNWKEQAEKARKRIISTEN 473

Arabidopsis thaliana (taxid: 3702)
>sp|A4IIS8|S47A1_XENTR Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q5I0E9|S47A1_RAT Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
225448691464 PREDICTED: MATE efflux family protein DT 0.976 0.974 0.630 1e-157
147808070495 hypothetical protein VITISV_021602 [Viti 0.978 0.915 0.624 1e-155
297736486433 unnamed protein product [Vitis vinifera] 0.909 0.972 0.627 1e-146
15224891486 MATE efflux family protein [Arabidopsis 0.982 0.936 0.551 1e-146
297823735486 hypothetical protein ARALYDRAFT_903087 [ 0.982 0.936 0.549 1e-145
255584253466 multidrug resistance pump, putative [Ric 0.987 0.980 0.575 1e-145
224139344445 predicted protein [Populus trichocarpa] 0.958 0.997 0.590 1e-142
356566794463 PREDICTED: MATE efflux family protein 9- 0.984 0.984 0.554 1e-142
356530181469 PREDICTED: MATE efflux family protein 9- 0.980 0.968 0.552 1e-141
356495125470 PREDICTED: multidrug and toxin extrusion 0.984 0.970 0.561 1e-141
>gi|225448691|ref|XP_002275181.1| PREDICTED: MATE efflux family protein DTX1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 285/452 (63%), Positives = 358/452 (79%)

Query: 5   MQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSV 64
           MQV EEL +L +IACP+ ITGLL   KSIISMLFLGHLGD+ELAGGSLS+  ANITGYSV
Sbjct: 1   MQVIEELIALGQIACPMVITGLLLYSKSIISMLFLGHLGDVELAGGSLSIAFANITGYSV 60

Query: 65  LKGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQ 124
           LKGLAMGMEPIC QA+GAKK  +LSQ   RT+ +L + + PI + W+N+E ILL  GQE 
Sbjct: 61  LKGLAMGMEPICCQAFGAKKWVVLSQTHSRTVGLLSLAVIPICVSWLNMEPILLWSGQEP 120

Query: 125 AIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMV 184
           +I SVA+V++ YSIPEL++Q  LNPL+IFLRTQ + KPLT++A+ A+I H+ IN  L + 
Sbjct: 121 SITSVARVFLTYSIPELLSQVHLNPLKIFLRTQGLTKPLTMSATCAMILHLPINYFLVVY 180

Query: 185 LNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSL 244
           LN+GV+GVALA+  ++  V LGLL+YL+ S+TA+KPW+  A  +  QGW  LLSL LPS+
Sbjct: 181 LNMGVKGVALASGFYSVNVSLGLLLYLLVSKTAIKPWNGVAFITYFQGWQPLLSLALPSV 240

Query: 245 LSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALG 304
            S+CLEWWWYE+ML++CGLLS+P+ASV+AMG+LIQTTGLLYVFPNSL+  LS  +G  LG
Sbjct: 241 CSVCLEWWWYEVMLLLCGLLSNPKASVAAMGVLIQTTGLLYVFPNSLSMSLSNRIGHELG 300

Query: 305 AEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLC 364
           A+QP RA+R TI G+ VA + GLLA  F   VR+ WGKLY+S+  +L LT  ALPI+GLC
Sbjct: 301 ADQPARAKRATIFGLTVAVICGLLACIFTIVVRNVWGKLYSSDQQILNLTSVALPIVGLC 360

Query: 365 ELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAA 424
           ELGN  QTA+ GIL GSARP +G  INF +FY++GLPVAAL+ F L++GF+GLW GLAAA
Sbjct: 361 ELGNNLQTASYGILTGSARPNMGAYINFGSFYLVGLPVAALLCFRLELGFVGLWLGLAAA 420

Query: 425 QASCVVMMIITLFCTDWKLQAQRAKELTQSSE 456
           QASC  MM+ TL  TDW+ QA+RAKELTQ++E
Sbjct: 421 QASCTCMMVYTLLRTDWREQAKRAKELTQATE 452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147808070|emb|CAN77541.1| hypothetical protein VITISV_021602 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736486|emb|CBI25357.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15224891|ref|NP_181385.1| MATE efflux family protein [Arabidopsis thaliana] gi|3786021|gb|AAC67367.1| hypothetical protein [Arabidopsis thaliana] gi|67633596|gb|AAY78722.1| MATE efflux protein-related [Arabidopsis thaliana] gi|330254451|gb|AEC09545.1| MATE efflux family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297823735|ref|XP_002879750.1| hypothetical protein ARALYDRAFT_903087 [Arabidopsis lyrata subsp. lyrata] gi|297325589|gb|EFH56009.1| hypothetical protein ARALYDRAFT_903087 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255584253|ref|XP_002532864.1| multidrug resistance pump, putative [Ricinus communis] gi|223527376|gb|EEF29518.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224139344|ref|XP_002323066.1| predicted protein [Populus trichocarpa] gi|222867696|gb|EEF04827.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356566794|ref|XP_003551612.1| PREDICTED: MATE efflux family protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356530181|ref|XP_003533662.1| PREDICTED: MATE efflux family protein 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356495125|ref|XP_003516431.1| PREDICTED: multidrug and toxin extrusion protein 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
TAIR|locus:2064138486 AT2G38510 "AT2G38510" [Arabido 0.982 0.936 0.520 3.6e-128
TAIR|locus:2127193502 AT4G23030 "AT4G23030" [Arabido 0.963 0.888 0.487 4.5e-114
TAIR|locus:2016615532 ZF14 "AT1G58340" [Arabidopsis 0.958 0.834 0.481 9.4e-114
TAIR|locus:2183169508 AT5G19700 "AT5G19700" [Arabido 0.967 0.881 0.452 4e-106
TAIR|locus:2119941532 ADS1 "AT4G29140" [Arabidopsis 0.989 0.860 0.440 6.5e-106
TAIR|locus:2173098505 AT5G52050 [Arabidopsis thalian 0.956 0.877 0.437 2.3e-101
TAIR|locus:2155179502 AT5G49130 "AT5G49130" [Arabido 0.956 0.882 0.387 8e-85
TAIR|locus:2013006510 AT1G71870 "AT1G71870" [Arabido 0.928 0.843 0.399 9.1e-84
TAIR|locus:2132619491 AT4G22790 "AT4G22790" [Arabido 0.974 0.918 0.334 9.7e-64
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.961 0.917 0.287 3e-53
TAIR|locus:2064138 AT2G38510 "AT2G38510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1258 (447.9 bits), Expect = 3.6e-128, P = 3.6e-128
 Identities = 237/455 (52%), Positives = 318/455 (69%)

Query:     5 MQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSV 64
             MQV EE+ SL KIACP+ +T LL   +SIISM FL HLG +ELAGG+L++G  NITG SV
Sbjct:     1 MQVGEEMASLTKIACPIVMTSLLIFSRSIISMWFLSHLGKVELAGGALAMGFGNITGVSV 60

Query:    65 LKGLAMGMEPICSQAYGAKKGTILSQACRRTXXXXXXXXXXXXXXWVNIEHILLSLGQEQ 124
             LKGL++GM+PIC QA+GAK+ T+LS   ++               W+NIE I L LGQ+ 
Sbjct:    61 LKGLSVGMDPICGQAFGAKRWTVLSHTFQKMFCLLIVVSVPIAVTWLNIEPIFLRLGQDP 120

Query:   125 AIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMV 184
              I  VAK Y+++ +PEL+AQA+L+PLR FLRTQ +  PLTI+A  +++ H   N +  + 
Sbjct:   121 DITKVAKTYMLFFVPELLAQAMLHPLRTFLRTQGLTSPLTISAIVSILLHPLFNYVFVVR 180

Query:   185 LNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWXXXXXXXXXX 244
             + LGV+GVA+A A +T  + +GLLVY  FS + +KPW+  A+ S  +GWW          
Sbjct:   181 MRLGVKGVAIAMAFNTMNIDVGLLVYTCFSDSLIKPWEGLALRSLFRGWWPLLSLAAPSA 240

Query:   245 XXXXXEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALG 304
                  E+WWYEIML +CGLL +P+ASV+AMGILIQTTG+LYV P +++  ++T VG ALG
Sbjct:   241 ISVCLEYWWYEIMLFLCGLLGNPKASVAAMGILIQTTGILYVVPFAISSAIATRVGHALG 300

Query:   305 AEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLC 364
               QP RAQ TT++G+I+A   GL A+ F  A+R  WGK++T E  +L L  AALPILGLC
Sbjct:   301 GGQPTRAQCTTVIGLILAVAYGLAAAVFVTALRSVWGKMFTDEPEILGLISAALPILGLC 360

Query:   365 ELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAA 424
             E+GN PQTAACG+L G+ARPK G  +N CAFYI+GLPVA    F  K+GF GLW+GL +A
Sbjct:   361 EIGNSPQTAACGVLTGTARPKDGARVNLCAFYIVGLPVAVTTTFGFKVGFRGLWFGLLSA 420

Query:   425 QASCVVMMIITLFCTDWKLQAQRAKELTQSSEEEA 459
             Q +C+VMM+ TL  TDW  Q +RA+ELT ++ +++
Sbjct:   421 QMTCLVMMLYTLIRTDWSHQVKRAEELTSAAADKS 455
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2127193 AT4G23030 "AT4G23030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016615 ZF14 "AT1G58340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183169 AT5G19700 "AT5G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119941 ADS1 "AT4G29140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173098 AT5G52050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155179 AT5G49130 "AT5G49130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013006 AT1G71870 "AT1G71870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132619 AT4G22790 "AT4G22790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-135
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 5e-50
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 5e-42
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 9e-40
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 1e-34
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-27
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 4e-26
pfam01554161 pfam01554, MatE, MatE 2e-25
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 5e-24
pfam01554161 pfam01554, MatE, MatE 3e-23
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-22
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 1e-20
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-19
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-18
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-12
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 3e-09
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 3e-09
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 1e-08
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 2e-07
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-07
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 7e-07
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 8e-07
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 1e-06
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 5e-06
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 9e-05
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 1e-04
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 3e-04
cd13148441 cd13148, MATE_like_3, Uncharacterized subfamily of 5e-04
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  396 bits (1020), Expect = e-135
 Identities = 170/438 (38%), Positives = 262/438 (59%), Gaps = 2/438 (0%)

Query: 10  ELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLA 69
           E   L ++A P+ +T LL    S++S++F+GHLG +ELA  SL+   AN+TG+S+L GLA
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 70  MGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISV 129
             ++ +C QA+GAK   ++    +R L IL++   PIS+LW+N E ILL LGQ+  I  +
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 130 AKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLGV 189
           A  Y+ + IP L A AL  PL+ +L+ Q I  PL   +  AL+ +I +N +L  VL LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 190 RGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICL 249
            G ALA +   +++++ LL+Y+ FS+     W   + +   +GW   L L +PS L +CL
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSRE-AFRGWGPFLKLAIPSALMLCL 239

Query: 250 EWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPG 309
           EWW +EI++++ GLL     +++A  I + TT LLY+ P  ++   S  VG  LGA  P 
Sbjct: 240 EWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPK 298

Query: 310 RAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNC 369
           RA+   I+ +I++ V G++ +     +RD W  L+TS+  V+AL    LPIL L ++ + 
Sbjct: 299 RAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDG 358

Query: 370 PQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCV 429
            Q    G+L G  R KLG  +N  A+Y+IGLPV  L+AF L +G  GLW GL A      
Sbjct: 359 LQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQA 418

Query: 430 VMMIITLFCTDWKLQAQR 447
           V++++ +  TDW  +A++
Sbjct: 419 VILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240553 cd13148, MATE_like_3, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 100.0
COG2244480 RfbX Membrane protein involved in the export of O- 99.97
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.92
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.92
PRK00187 464 multidrug efflux protein NorA; Provisional 99.91
PRK10189 478 MATE family multidrug exporter; Provisional 99.91
PRK01766 456 multidrug efflux protein; Reviewed 99.9
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.9
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.84
TIGR01695502 mviN integral membrane protein MviN. This model re 99.81
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.81
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.79
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.76
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.75
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.72
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.71
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.7
PRK10459492 colanic acid exporter; Provisional 99.67
PRK15099416 O-antigen translocase; Provisional 99.63
COG2244480 RfbX Membrane protein involved in the export of O- 99.57
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.47
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.34
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.34
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.14
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.55
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.35
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.29
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.14
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.09
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.01
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.63
COG4267467 Predicted membrane protein [Function unknown] 97.21
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-58  Score=443.10  Aligned_cols=437  Identities=24%  Similarity=0.356  Sum_probs=413.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChh
Q 012464            7 VAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGT   86 (463)
Q Consensus         7 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~   86 (463)
                      .++..|+++++++|++++++.+.+++++|++++||+|++++++.+++.++.... ..+..|++.|.++.+||++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            355899999999999999999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHH
Q 012464           87 ILSQACRRTLSILIVIIFPIS-ILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTI  165 (463)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  165 (463)
                      ++++..++++.+..+++++.. +...+.++++.+++.++|+.+.+.+|+++..++.|+..++...++++|+.||++.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            999999999999999998777 4589999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-hC-cccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhh
Q 012464          166 AASFALIFHIAINIILAMV-LN-LGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPS  243 (463)
Q Consensus       166 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  243 (463)
                      .+++++++|++++++++++ ++ +|+.|+++||++++.+.+++...++.++++..........+++++..|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999999 47 999999999999999999999999977664211111122355899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 012464          244 LLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAF  323 (463)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~  323 (463)
                      .+++..+...+...+.++++++  ++.+|+|+++.++.++..++..+++++..|.+++++|+||++++++..+.+.++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998  99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHH
Q 012464          324 VGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVA  403 (463)
Q Consensus       324 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~  403 (463)
                      .++...+++++++++++.++|++|+|+.+.+..++++.+...++++.+.+..+.+|+.||+|.++..++.+.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q 012464          404 ALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQR  447 (463)
Q Consensus       404 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (463)
                      ++++... +|..|+|++...++.++.+...+++++++|+++..+
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVA  451 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            9999877 899999999999999999999999999999876544

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 9e-10
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 3e-07
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 178/450 (39%), Gaps = 45/450 (10%)
Query: 9   EELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVL--K 66
           +E ++L K+A PV I  +       +  +  G +  I++A  S++   A+I   S+L   
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIA---ASIWLPSILFGV 65
Query: 67  GLAMGMEPICSQAYGAKKGTILSQACRRTXXXXXXXXXXXXXXWVNIEHILLSLGQEQAI 126
           GL M + P+ +Q  GA +   +     +                   + I+  +  E+A+
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125
Query: 127 ISVAKVY---IIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAM 183
            +    Y   +I+++P   A  L   LR F    ++ KP  +     L+ +I +N I   
Sbjct: 126 ATKTVGYMHAVIFAVP---AYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVY 182
Query: 184 ----VLNLGVRGVALAAASHTFIVILGLLVYLIFSR---------TALKPWDWQAVDSCN 230
                  LG  G  +A A   +I++L LL Y++ S+         T  KP   + +    
Sbjct: 183 GKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 242
Query: 231 QGWWXXXXXXXXXXXXXXXEWWWYEIMLI-MCGLLSDPQAS--VSAMGILIQTTGLLYVF 287
            G+                   ++E+ L  +  LL  P  S  V+A  + +  + L+++F
Sbjct: 243 LGFPVAAAL-------------FFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMF 289
Query: 288 PNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSE 347
           P S+   +S  VG  LG +    A     +G++       + +      R+    LYT  
Sbjct: 290 PMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTEN 349
Query: 348 SAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMA 407
             V+AL    L    + +  +  Q  A G L G           F +++++GLP   ++ 
Sbjct: 350 QVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG 409
Query: 408 F-----ELKIGFLGLWYGLAAAQASCVVMM 432
                 E  +G  G W G     ++  +M+
Sbjct: 410 MTNWLTEQPLGAKGFWLGFIIGLSAAALML 439
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 5e-67
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  221 bits (564), Expect = 5e-67
 Identities = 94/458 (20%), Positives = 183/458 (39%), Gaps = 17/458 (3%)

Query: 9   EELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGL 68
           +E ++L K+A PV I  +       +  +  G +  I++A  S++  I  +       GL
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGL 67

Query: 69  AMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIIS 128
            M + P+ +Q  GA +   +     + L + +++  PI  +    + I+  +  E+A+ +
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127

Query: 129 VAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIIL----AMV 184
               Y+   I  + A  L   LR F    ++ KP  +     L+ +I +N I        
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 187

Query: 185 LNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCN-QGWWSLLSLMLPS 243
             LG  G  +A A   +I++L LL Y++ S+       ++       +    L  L  P 
Sbjct: 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247

Query: 244 LLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQAL 303
             ++  E   + ++ ++   L      V+A  + +  + L+++FP S+   +S  VG  L
Sbjct: 248 AAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 305

Query: 304 GAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGL 363
           G +    A     +G++       + +      R+    LYT    V+AL    L    +
Sbjct: 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 365

Query: 364 CELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAF-----ELKIGFLGLW 418
            +  +  Q  A G L G           F +++++GLP   ++       E  +G  G W
Sbjct: 366 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 425

Query: 419 YGLAAAQASCVVMMIITLFCTDWKLQAQRAKELTQSSE 456
            G     ++  +M+   L    + LQ Q        + 
Sbjct: 426 LGFIIGLSAAALMLGQRL----YWLQKQSDDVQLHLAA 459
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.82
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 88.48
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=5.4e-51  Score=398.17  Aligned_cols=433  Identities=21%  Similarity=0.331  Sum_probs=398.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCC
Q 012464            5 MQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKK   84 (463)
Q Consensus         5 ~~~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~   84 (463)
                      +..++..|++++.++|.+++++...+.+.+|..+++|+|++++|+++++.++..+. ..+..|++.+..+.++|++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            45678899999999999999999999999999999999999999999999998776 78889999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHH
Q 012464           85 GTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLT  164 (463)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  164 (463)
                      +++.++.+++++.+..+.+++..++..+.++++.+++.+++..+.+..|+++..++.++..+....++++++.||++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999999987667788888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-h---CcccchHHHHHHHHHHHHHHHHHHHHHhcccCCC-cCCCCCchhhhhhHHHHHHH
Q 012464          165 IAASFALIFHIAINIILAMV-L---NLGVRGVALAAASHTFIVILGLLVYLIFSRTALK-PWDWQAVDSCNQGWWSLLSL  239 (463)
Q Consensus       165 ~~~~~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  239 (463)
                      ..++++.++|+++++++++. +   ++|+.|+++++.+++.+..++...+.+++++.+. +..+...+++++..|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999975 3   6999999999999999999988877765543321 11111124478899999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 012464          240 MLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGI  319 (463)
Q Consensus       240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~  319 (463)
                      +.|..++++...+.+..++.++++++  ++++|+|+++.++.++...+..+++++..|.+++++|+||.+++++..+++.
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999996  8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 012464          320 IVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIG  399 (463)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~  399 (463)
                      +.+..++++.++++.++++++..+|.+|+++.+.+..++++++++.++++++....+.+++.||+|.++..++++.|+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999998999


Q ss_pred             HHHHHHHHHH----hc-cchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012464          400 LPVAALMAFE----LK-IGFLGLWYGLAAAQASCVVMMIITLFCTD  440 (463)
Q Consensus       400 i~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~  440 (463)
                      +|+++++...    ++ +|..|+|+++.+++.+..++..++++|..
T Consensus       402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887    66 89999999999999999888776666543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00