Citrus Sinensis ID: 012466

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
MQKREQGKSGGAAGGAATPAAKRGRPFGSTSGSSGGSGSAADSAAPTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQKNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWGCG
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccEEEcccccc
ccccHccccccccccccccccccccccccccccHHHHHHHcccccccccccccEEEHHccccccccHHHEEHHcccHHHHHHHHHHHHHHccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHccccccEEcccccccccccHHHHHccccccccccccccccccHHHHHHcccccccccccccEcccccccccHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccEEccccccccEEEcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccEHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccEEEEEEEEccc
mqkreqgksggaaggaatpaakrgrpfgstsgssggsgsaadsaapttllgpslqvhssfadqNHKRIVLALQSGLKSELTWALNTLTLlsfkekddmrkdatplakipGLLDALLQVIDDWrdialpkelskgprartlgvnslvtgfgsefealgsinnafprsgvgsgssaaDSLVQKNAARVrssewwfdedglfnlddegraEKQQCAVGAsniirnfsfmpdneVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLaplldlrifssSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRliinpdnepfllpfvpQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRViktphpvpeVCRKAAMILESLVSEPQNRVLLLAYENAFAEIlfsdgrysDTFARILYELtsrpnnkvasargiwgcg
mqkreqgksggaaggaatpaakrgrpFGSTSGSSGGSGSAADSAAPTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALpkelskgprartlGVNSLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQKNAARvrssewwfdEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLrviktphpvpEVCRKAAMILESLVSEPQNRVLLLAYENAFAEilfsdgrySDTFARILYeltsrpnnkvasargiwgcg
MQKREQgksggaaggaatpaakrgrpFgstsgssggsgsaadsaaPTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRsgvgsgssAADSLVQKNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWGCG
***************************************************************NHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSIN*************************VRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSR****V***RGIW***
*QKRE******************************************************FADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRSGV***********************WFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHP**EVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWGCG
********************************************APTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPR********************VRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWGCG
*********************************************PTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRSGVGSGS*****************EWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWGCG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQKREQGKSGGAAGGAATPAAKRGRPFGSTSGSSGGSGSAADSAAPTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQKNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWGCG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query463 2.2.26 [Sep-21-2011]
Q68CP9 1835 AT-rich interactive domai yes no 0.615 0.155 0.252 2e-07
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2 Back     alignment and function desciption
 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 143/333 (42%), Gaps = 48/333 (14%)

Query: 64  NHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWR 123
           ++ ++VL+L SGL +E+ +A+N  TLLS + K  M+ +  P  KI  LL A   V DD  
Sbjct: 157 DYNKLVLSLLSGLPNEVDFAINVCTLLSNESKHVMQLEKDP--KIITLLLANAGVFDD-- 212

Query: 124 DIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQKNA 183
                          TLG  S  T FG E++     +       +   +   D +  +N 
Sbjct: 213 ---------------TLG--SFSTVFGEEWKEKTDRDFVKFWKDIVDDNEVRDLISDRNK 255

Query: 184 ARVRSSEWW-----FDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRH 238
           +   +S  W     F       ++D       Q AV    I+RN SF   N  ++A +R 
Sbjct: 256 SHEGTSGEWIWESLFHPPRKLGINDIEGQRVLQIAV----ILRNLSFEEGNVKLLAANRT 311

Query: 239 CLETVFQCIEDHVTEDEELVTNALETIVNLAP--LLDLRIFSSSKQSYIKITREKRAVEA 296
           CL  +      H     +L    L+T+ N+A   LLD   F ++   +  +T+   + + 
Sbjct: 312 CLRFLLLSAHSHFISLRQL---GLDTLGNIAAELLLDPVDFKTTHLMFHTVTKCLMSRDR 368

Query: 297 IMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAA 355
            + + G           E+LG L    DN   +  +V Q  ++ ++  ++LP      + 
Sbjct: 369 FLKMRG----------MEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVIST 418

Query: 356 VGALYNLAEV-NVDCRLKLASERWAIDRLLRVI 387
           +  LY L E+ +V C  K+A    +ID L+ ++
Sbjct: 419 LEVLYMLTEMGDVAC-TKIAKVEKSIDMLVCLV 450
Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Required for the stability of the SWI/SNF chromatin remodeling complex SWI/SNF-B (PBAF). May be involved in targeting the complex to different genes. May be involved in regulating transcriptional activation of cardiac genes.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
225432860457 PREDICTED: AT-rich interactive domain-co 0.984 0.997 0.852 0.0
356500441460 PREDICTED: uncharacterized protein LOC10 0.991 0.997 0.817 0.0
356536049460 PREDICTED: uncharacterized protein LOC10 0.991 0.997 0.835 0.0
449432640460 PREDICTED: uncharacterized protein LOC10 0.976 0.982 0.784 0.0
224099867453 predicted protein [Populus trichocarpa] 0.971 0.993 0.829 0.0
358346987524 hypothetical protein MTR_090s0013 [Medic 0.859 0.759 0.815 0.0
358345932444 hypothetical protein MTR_067s0040, parti 0.863 0.900 0.808 0.0
255551987412 conserved hypothetical protein [Ricinus 0.887 0.997 0.757 0.0
125559139460 hypothetical protein OsI_26829 [Oryza sa 0.935 0.941 0.7 1e-180
297725863460 Os07g0609766 [Oryza sativa Japonica Grou 0.935 0.941 0.7 1e-180
>gi|225432860|ref|XP_002283908.1| PREDICTED: AT-rich interactive domain-containing protein 2 [Vitis vinifera] gi|147794687|emb|CAN69148.1| hypothetical protein VITISV_003946 [Vitis vinifera] gi|297737139|emb|CBI26340.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/461 (85%), Positives = 422/461 (91%), Gaps = 5/461 (1%)

Query: 1   MQKREQGKSGGAAGGAATPAAKRGRPFGSTSGSSGGSGSAADSAAPTTLLGPSLQVHSSF 60
           MQKR+Q K GG AGGA TPAAKRGRPFGS  GS+  + +AAD+AAP+TLLGPSL VHSSF
Sbjct: 1   MQKRDQSKLGGTAGGATTPAAKRGRPFGS-GGSNSAAAAAADAAAPSTLLGPSLHVHSSF 59

Query: 61  ADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVID 120
           ADQN+KRIVLALQSGLKSEL WA+N LTLLSFKEKDD+RKDATPLAKIPGLLDALLQVID
Sbjct: 60  ADQNNKRIVLALQSGLKSELGWAINALTLLSFKEKDDVRKDATPLAKIPGLLDALLQVID 119

Query: 121 DWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQ 180
           DWRDIALPKEL+K PRAR LG NS VTGFG+E+EALGS N+    S  GSGSS +++ VQ
Sbjct: 120 DWRDIALPKELAKAPRARLLGANSFVTGFGNEYEALGS-NDVL--SHPGSGSSISEASVQ 176

Query: 181 KNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRHCL 240
           KN  ++R SEWW DEDGLFNLD+EGRAEKQQCAV ASNIIRNFSFMPDNEVIMAQHRHCL
Sbjct: 177 KNTTKLRPSEWWLDEDGLFNLDEEGRAEKQQCAVAASNIIRNFSFMPDNEVIMAQHRHCL 236

Query: 241 ETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGI 300
           ETVFQCIEDH+TEDEELVTNALETIVNLAPLLDLRIFSSSK SYIKIT EKRAV+AIMG+
Sbjct: 237 ETVFQCIEDHITEDEELVTNALETIVNLAPLLDLRIFSSSKPSYIKIT-EKRAVQAIMGM 295

Query: 301 LGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALY 360
           LGS  KAWHCAAAELLGRLIINPDNEPFLLPF  QIHKRLVDL+SLPA DAQAAAVGALY
Sbjct: 296 LGSAVKAWHCAAAELLGRLIINPDNEPFLLPFASQIHKRLVDLLSLPAVDAQAAAVGALY 355

Query: 361 NLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAY 420
           NLAEVN+DCRLKLASERWAIDRLL+VIKTPHPVPEVCRKAAMI+ESLVSEPQNR  LLAY
Sbjct: 356 NLAEVNMDCRLKLASERWAIDRLLKVIKTPHPVPEVCRKAAMIIESLVSEPQNRAQLLAY 415

Query: 421 ENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWG 461
           ENAFAEILFSDGR+SDTFARILYELTSRPNNK+A+ARGIWG
Sbjct: 416 ENAFAEILFSDGRHSDTFARILYELTSRPNNKMAAARGIWG 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356500441|ref|XP_003519040.1| PREDICTED: uncharacterized protein LOC100814807 [Glycine max] Back     alignment and taxonomy information
>gi|356536049|ref|XP_003536553.1| PREDICTED: uncharacterized protein LOC100790539 [Glycine max] Back     alignment and taxonomy information
>gi|449432640|ref|XP_004134107.1| PREDICTED: uncharacterized protein LOC101219772 [Cucumis sativus] gi|449516049|ref|XP_004165060.1| PREDICTED: uncharacterized LOC101219772 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224099867|ref|XP_002311651.1| predicted protein [Populus trichocarpa] gi|118487781|gb|ABK95714.1| unknown [Populus trichocarpa] gi|222851471|gb|EEE89018.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358346987|ref|XP_003637544.1| hypothetical protein MTR_090s0013 [Medicago truncatula] gi|355503479|gb|AES84682.1| hypothetical protein MTR_090s0013 [Medicago truncatula] Back     alignment and taxonomy information
>gi|358345932|ref|XP_003637028.1| hypothetical protein MTR_067s0040, partial [Medicago truncatula] gi|355502963|gb|AES84166.1| hypothetical protein MTR_067s0040, partial [Medicago truncatula] Back     alignment and taxonomy information
>gi|255551987|ref|XP_002517038.1| conserved hypothetical protein [Ricinus communis] gi|223543673|gb|EEF45201.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|125559139|gb|EAZ04675.1| hypothetical protein OsI_26829 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|297725863|ref|NP_001175295.1| Os07g0609766 [Oryza sativa Japonica Group] gi|14192867|gb|AAK55772.1|AC079038_6 Unknown protein [Oryza sativa] gi|34394199|dbj|BAC84651.1| unknown protein [Oryza sativa Japonica Group] gi|255677964|dbj|BAH94023.1| Os07g0609766 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query463
TAIR|locus:2094618460 LFR "LEAF AND FLOWER RELATED" 0.887 0.893 0.754 2.8e-169
UNIPROTKB|J9PA03 1687 ARID2 "Uncharacterized protein 0.390 0.107 0.258 2.1e-07
UNIPROTKB|F1N463 1739 ARID2 "Uncharacterized protein 0.390 0.104 0.258 2.3e-07
UNIPROTKB|I3LU38 1739 ARID2 "Uncharacterized protein 0.390 0.104 0.258 2.3e-07
UNIPROTKB|Q68CP9 1835 ARID2 "AT-rich interactive dom 0.390 0.098 0.258 2.7e-07
UNIPROTKB|E2RFL8 1836 ARID2 "Uncharacterized protein 0.390 0.098 0.258 2.8e-07
ZFIN|ZDB-GENE-030131-6311 1573 arid2 "AT rich interactive dom 0.362 0.106 0.280 3.4e-07
UNIPROTKB|E1C9H0 1831 ARID2 "Uncharacterized protein 0.444 0.112 0.241 7.3e-07
UNIPROTKB|F8WCU9 1639 ARID2 "AT-rich interactive dom 0.390 0.110 0.258 1.5e-05
DICTYBASE|DDB_G0278395588 DDB_G0278395 [Dictyostelium di 0.250 0.197 0.25 0.00026
TAIR|locus:2094618 LFR "LEAF AND FLOWER RELATED" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1646 (584.5 bits), Expect = 2.8e-169, P = 2.8e-169
 Identities = 314/416 (75%), Positives = 367/416 (88%)

Query:    46 PTTLLGPSLQVHSSFADQNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPL 105
             P+ LLGPSL VH+SF +QN++RIVLALQSGLKSE+TWALNTLTLLSFKEK+D+R+D  PL
Sbjct:    49 PSALLGPSLLVHNSFVEQNNRRIVLALQSGLKSEVTWALNTLTLLSFKEKEDIRRDVMPL 108

Query:   106 AKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPR 165
             AKI GLLDALL +IDDWRDIALPK+L++G R RTLG N+ VTGFG+E++AL SI    P 
Sbjct:   109 AKIAGLLDALLLIIDDWRDIALPKDLTRGTRVRTLGTNASVTGFGNEYDALASIQP--P- 165

Query:   166 XXXXXXXXAADSLVQKNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSF 225
                     AA++L +K+  + +SS+WW +EDGLFNLDDEGR+EKQ CA+ ASN+IRNFSF
Sbjct:   166 -GSGIGSSAAEALGKKSTGKHQSSQWWMEEDGLFNLDDEGRSEKQMCAIAASNVIRNFSF 224

Query:   226 MPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYI 285
             MPDNEV+MAQHRHCLETVFQCI DH+TEDEELVTN+LETIVNLA L+DLRIFSS KQSYI
Sbjct:   225 MPDNEVVMAQHRHCLETVFQCIHDHMTEDEELVTNSLETIVNLAHLMDLRIFSSLKQSYI 284

Query:   286 KITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMS 345
              I  EK+AV+A++GIL S  KAW+CAAAELLGRLIINPDNEPF+ P +PQIHKRL+DL+S
Sbjct:   285 NIN-EKKAVQAVVGILNSSVKAWNCAAAELLGRLIINPDNEPFISPLIPQIHKRLIDLLS 343

Query:   346 LPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILE 405
             + A DAQAAAVGALYNL EVN+DCRLKLASERWA+DRLL+VIKTPHPVPEVCRKAAMILE
Sbjct:   344 IQAVDAQAAAVGALYNLVEVNMDCRLKLASERWAVDRLLKVIKTPHPVPEVCRKAAMILE 403

Query:   406 SLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVASARGIWG 461
             +LVSEPQNR LLLAYENAFAE+LF +G+YSD+FARILYELT+R N++VASARGIWG
Sbjct:   404 NLVSEPQNRGLLLAYENAFAELLFQEGKYSDSFARILYELTARSNSRVASARGIWG 459
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009908 "flower development" evidence=IMP
GO:0048366 "leaf development" evidence=IMP
GO:0006312 "mitotic recombination" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
UNIPROTKB|J9PA03 ARID2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1N463 ARID2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LU38 ARID2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q68CP9 ARID2 "AT-rich interactive domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFL8 ARID2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-6311 arid2 "AT rich interactive domain 2 (ARID, RFX-like)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C9H0 ARID2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F8WCU9 ARID2 "AT-rich interactive domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278395 DDB_G0278395 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 7e-04
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information 
 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 338 KRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVC 397
             LV L+     +   AA+ AL NLA    D +L +      + +L+ ++       ++ 
Sbjct: 52  PALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG-GVPKLVNLLD--SSNEDIQ 108

Query: 398 RKAAMILESLVS 409
           + A   L +L S
Sbjct: 109 KNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 463
PF12031257 DUF3518: Domain of unknown function (DUF3518); Int 99.93
KOG2312 847 consensus Predicted transcriptional regulator, con 99.78
PF05804 708 KAP: Kinesin-associated protein (KAP) 98.17
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.72
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.68
PF05804 708 KAP: Kinesin-associated protein (KAP) 97.64
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.47
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.27
KOG0166 514 consensus Karyopherin (importin) alpha [Intracellu 96.88
KOG4224550 consensus Armadillo repeat protein VAC8 required f 96.6
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.56
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.39
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.09
KOG0166 514 consensus Karyopherin (importin) alpha [Intracellu 95.84
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.81
KOG1048717 consensus Neural adherens junction protein Plakoph 94.87
KOG1222 791 consensus Kinesin associated protein KAP [Intracel 93.84
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 93.35
KOG4224 550 consensus Armadillo repeat protein VAC8 required f 92.85
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 92.65
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 91.84
COG5064 526 SRP1 Karyopherin (importin) alpha [Intracellular t 91.81
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 91.74
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 91.52
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 91.5
PRK09687280 putative lyase; Provisional 91.09
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 90.81
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 90.61
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 90.37
COG5064 526 SRP1 Karyopherin (importin) alpha [Intracellular t 89.59
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 89.37
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 88.25
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 88.12
PRK09687280 putative lyase; Provisional 87.41
KOG1048 717 consensus Neural adherens junction protein Plakoph 85.91
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 85.44
KOG4500 604 consensus Rho/Rac GTPase guanine nucleotide exchan 85.3
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 85.27
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 84.99
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 83.76
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 83.21
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 82.22
KOG4413524 consensus 26S proteasome regulatory complex, subun 82.16
COG5096 757 Vesicle coat complex, various subunits [Intracellu 80.84
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised Back     alignment and domain information 
Probab=99.93  E-value=3.1e-26  Score=221.08  Aligned_cols=172  Identities=27%  Similarity=0.333  Sum_probs=147.5

Q ss_pred             HhhhhhhhhhhcCCCCCCcHHHHhhChhHHHHHHH---hhhccCC-----------Ch-----------------HHHHH
Q 012466          211 QCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQ---CIEDHVT-----------ED-----------------EELVT  259 (463)
Q Consensus       211 r~a~eas~ILRNLSf~~~N~~~LA~~~~ll~lLl~---~l~~~~~-----------~d-----------------~eLr~  259 (463)
                      +|++|++||||||||+|+|+..||+|++++.+|.+   .+|.|..           ++                 ..||+
T Consensus         5 ~RclclSNIlR~LSFvpGnd~emskh~~lL~ilGrlLlL~h~h~~r~~~~~~~~~~e~~~~~~~~~~~~wwwd~l~~lRE   84 (257)
T PF12031_consen    5 RRCLCLSNILRGLSFVPGNDTEMSKHPGLLLILGRLLLLHHEHPERKQKPRTYDREEEEDESLSCSEAEWWWDCLEQLRE   84 (257)
T ss_pred             HHHHHHHHHHhccCcCCCcHHHHhhChhHHHHHHHHHhcccCCcccccCCCCcchhhhhccccccchHHHHHHHHHHHhh
Confidence            34566999999999999999999999999999954   3455530           00                 35999


Q ss_pred             HHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCC---------------ChHHHHHHHHHHHhhcCCCC
Q 012466          260 NALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSP---------------FKAWHCAAAELLGRLIINPD  324 (463)
Q Consensus       260 ~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~---------------Dr~~~l~aLE~L~rLs~~~~  324 (463)
                      ++|++++|||+++||..|+++      |.  .++++.|.++..|+               .-..+..|||+|+|||+.|+
T Consensus        85 nalV~laNisgqLdLs~~~e~------I~--~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~  156 (257)
T PF12031_consen   85 NALVTLANISGQLDLSDYPES------IA--RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIEN  156 (257)
T ss_pred             cceEeeeeeeeeeecccCchH------HH--HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheecc
Confidence            999999999999999998776      33  56888888887653               12467999999999999999


Q ss_pred             CccccCCCchH-----HHHHHHHhcCCc-HHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCC
Q 012466          325 NEPFLLPFVPQ-----IHKRLVDLMSLP-AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP  390 (463)
Q Consensus       325 Ne~~ll~~~p~-----i~~rlv~lL~l~-D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~  390 (463)
                      |+++|+...|-     +|..++++|+.+ |..++|+++..|.+|+..++.+|+.||.++++|.+||+||+.+
T Consensus       157 NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a  228 (257)
T PF12031_consen  157 NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA  228 (257)
T ss_pred             CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence            99999977663     899999999985 6699999999999999999999999999999999999999876

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query463
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-11
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 8e-11
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-05
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 6e-11
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 5e-10
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 5e-05
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 7e-04
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 2e-10
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 4e-10
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 3e-05
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 1e-08
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 4e-07
3nmw_A 354 APC variant protein; ARMADIILO repeats domain, cel 2e-06
3nmw_A 354 APC variant protein; ARMADIILO repeats domain, cel 4e-04
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 3e-08
3nmz_A458 APC variant protein; protein-protein complex, arma 2e-07
3nmz_A458 APC variant protein; protein-protein complex, arma 6e-04
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 6e-06
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 4e-04
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 7e-06
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 9e-06
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 2e-04
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 7e-04
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 1e-05
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 1e-05
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-05
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-04
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 2e-05
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 3e-05
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-05
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 9e-05
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 65.6 bits (159), Expect = 2e-11
 Identities = 79/500 (15%), Positives = 149/500 (29%), Gaps = 159/500 (31%)

Query: 35  GGSG-S--AADSAAPTTLL-GPSLQVH-SSFADQNHKRIVLALQSGLKSELTWALNTLTL 89
            GSG +  A D      +      ++   +  + N    VL +   L  ++     + + 
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 90  LSFKEK---DDMRKDATPLAKIPGLLDALLQVIDD-W------------------RDIAL 127
            S   K     ++ +   L K     + LL V+ +                    R   +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 128 PKELSKGPRARTLGVNSLVTGFGSEFEA-------LGSINNAFPRSGVGSGSSAADSLVQ 180
              LS       + ++       +  E        L       PR  + + +    S++ 
Sbjct: 278 TDFLS-AATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLPREVL-TTNPRRLSII- 333

Query: 181 KNAARVRS--SEW--W----FD------EDGLFNLD-DEGRAEKQQCAVGASNIIRNFSF 225
             A  +R   + W  W     D      E  L  L+  E R    + +V          F
Sbjct: 334 --AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----------F 381

Query: 226 MPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYI 285
            P +  I       L  ++    D +  D  +V N L                  K S +
Sbjct: 382 -PPSAHIPTI---LLSLIW---FDVIKSDVMVVVNKLH-----------------KYSLV 417

Query: 286 KITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMS 345
               EK+  E+ + I              +   L +  +NE         +H+ +VD  +
Sbjct: 418 ----EKQPKESTISIPS------------IYLELKVKLENEY-------ALHRSIVDHYN 454

Query: 346 LP-AFDAQAAAVGAL---------YNLAEVNVDCRLKLASE-----RWAIDRLLRVIKTP 390
           +P  FD+       L         ++L  +    R+ L        R+ +++ +R   T 
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDSTA 513

Query: 391 HPVPEVCRKAAMILESLV-----------SEPQNRVLLLAYENAF----AEILFSDGRYS 435
                    +  IL +L            ++P+   L+ A  + F     E L    +Y+
Sbjct: 514 ------WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD-FLPKIEENLICS-KYT 565

Query: 436 DTFARIL-------YELTSR 448
           D     L       +E   +
Sbjct: 566 DLLRIALMAEDEAIFEEAHK 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.9
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.74
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.73
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.7
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.68
3nmz_A458 APC variant protein; protein-protein complex, arma 98.66
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.64
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.59
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.57
3nmz_A458 APC variant protein; protein-protein complex, arma 98.5
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.44
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 98.42
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.38
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.27
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.24
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 98.22
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.2
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.17
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.16
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 98.15
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.13
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 98.12
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 98.06
2jdq_A 450 Importin alpha-1 subunit; transport, PB2 subunit, 98.05
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 98.02
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 98.01
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 97.98
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 97.95
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.95
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.91
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.89
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 97.88
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.86
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.82
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.73
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 97.71
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.68
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 97.66
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 97.29
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 97.11
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 97.08
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 96.58
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 96.27
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 96.23
3grl_A 651 General vesicular transport factor P115; vesicle t 96.21
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 95.68
3grl_A 651 General vesicular transport factor P115; vesicle t 95.59
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 95.57
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 95.43
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 94.83
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 94.74
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 94.15
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 94.13
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 94.06
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 94.05
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 92.85
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 92.83
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 92.69
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 92.08
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 91.5
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 91.47
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 91.32
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 91.29
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 91.23
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 90.46
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 89.74
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 89.68
1qgr_A 876 Protein (importin beta subunit); transport recepto 88.7
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 88.41
1qgr_A 876 Protein (importin beta subunit); transport recepto 88.03
2db0_A253 253AA long hypothetical protein; heat repeats, hel 81.63
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 81.37
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
Probab=98.90  E-value=2.4e-08  Score=92.42  Aligned_cols=219  Identities=17%  Similarity=0.168  Sum_probs=162.8

Q ss_pred             hhhhhhcCCCCCC-cHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCc-cccccCCCcccccccchhHHH
Q 012466          216 ASNIIRNFSFMPD-NEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLL-DLRIFSSSKQSYIKITREKRA  293 (463)
Q Consensus       216 as~ILRNLSf~~~-N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l-~L~~~~~s~~~~l~i~~~~~l  293 (463)
                      ++.+|+|++...+ |...+.+ ...+..|+.++...   +.+++..++.++.|++..- +..         -.+. ....
T Consensus        22 a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~---------~~~~-~~~~   87 (252)
T 4hxt_A           22 AARDLAEIASGPASAIKAIVD-AGGVEVLVKLLTST---DSEVQKEAARALANIASGPDEAI---------KAIV-DAGG   87 (252)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHH---------HHHH-HTTH
T ss_pred             HHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHcCChHHH---------HHHH-HCCC
Confidence            5788999987665 7777776 46777777777764   4689999999999999541 111         0111 2336


Q ss_pred             HHHHHHhhCCCChHHHHHHHHHHHhhcC-CCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012466          294 VEAIMGILGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK  372 (463)
Q Consensus       294 l~tL~~~L~S~Dr~~~l~aLE~L~rLs~-~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~  372 (463)
                      +..|..+|.+++......|+.+|++|+. ++.+...+..  ...++.++++|..++.+++..++.+|.+++..+...+..
T Consensus        88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~  165 (252)
T 4hxt_A           88 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA  165 (252)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            7889999999999999999999999995 4444322222  127888999999999999999999999999987766555


Q ss_pred             hhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCcchhHHhh--HHHHHHHHh-ccchhHHHHHHHHHHHhcC
Q 012466          373 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS-EPQNRVLLLAY--ENAFAEILF-SDGRYSDTFARILYELTSR  448 (463)
Q Consensus       373 ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~-~p~n~~~ll~~--E~~l~~i~~-sD~~~~~~~~~iL~~l~~~  448 (463)
                      +. ..+.|..|+.++.++  ++++...|+.+|.+|+. .|+++..+...  =+.|..+.- .|+.+...-..+|..+...
T Consensus       166 ~~-~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          166 IV-DAGGVEVLVKLLTST--DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG  242 (252)
T ss_dssp             HH-HTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred             HH-HCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence            54 478999999999865  67889999999999998 55555555431  123333322 4788889999999999887


Q ss_pred             CCccc
Q 012466          449 PNNKV  453 (463)
Q Consensus       449 ~~~~~  453 (463)
                      ..++.
T Consensus       243 ~~~~~  247 (252)
T 4hxt_A          243 GWLEH  247 (252)
T ss_dssp             CBCCC
T ss_pred             CCccc
Confidence            76653
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 463
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 6e-07
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 6e-04
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 0.004
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 1e-04
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 6e-04
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 9e-04
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 20/138 (14%), Positives = 52/138 (37%), Gaps = 11/138 (7%)

Query: 286 KITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMS 345
            I  +++ +  I  +L S       + A LL  +  +P     +     Q+   +  L++
Sbjct: 325 LIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM---GNQVFPEVTRLLT 381

Query: 346 L------PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRK 399
                   + D  ++A   + NL         +  S    ++ ++ + ++    P+    
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS-MLNNIINLCRSSAS-PKAAEA 439

Query: 400 AAMILESLVSEPQNRVLL 417
           A ++L  + S  + + +L
Sbjct: 440 ARLLLSDMWSSKELQGVL 457
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query463
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.37
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.02
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.98
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.87
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.86
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.85
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.83
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.76
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.67
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.48
d1b3ua_588 Constant regulatory domain of protein phosphatase 94.08
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 93.42
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 92.65
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 92.24
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 92.05
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 91.81
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 89.8
d1b3ua_ 588 Constant regulatory domain of protein phosphatase 89.09
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 88.7
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 86.6
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 86.22
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 85.37
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 84.36
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 84.08
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.1e-06  Score=86.09  Aligned_cols=221  Identities=15%  Similarity=0.183  Sum_probs=164.2

Q ss_pred             hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466          216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE  295 (463)
Q Consensus       216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~  295 (463)
                      ++.++.+++-.+.+...+.+.+.++..|+.++...  .+.+++..+.-+|.+++.+-+...         .+. +.-.+.
T Consensus        37 A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~--~~~~~~~~a~~~L~~l~~~~~~~~---------~i~-~~g~i~  104 (529)
T d1jdha_          37 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHREGLL---------AIF-KSGGIP  104 (529)
T ss_dssp             HHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSHHHHH---------HHH-HTTHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCCchhHH---------HHH-HCCCHH
Confidence            67788888888888888999999999998888665  346799999999999985433220         121 223678


Q ss_pred             HHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCch-HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh
Q 012466          296 AIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP-QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA  374 (463)
Q Consensus       296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p-~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia  374 (463)
                      .|..+|.++|......|+++|++||....+.....  .. ..++.++.+|..++.+++..+..+|++++..+..... ..
T Consensus       105 ~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~--~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~  181 (529)
T d1jdha_         105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV--RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL-II  181 (529)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHH--HHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH-HH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHH--HhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHH-HH
Confidence            89999999999999999999999998766532111  11 1678899999999999999999999999988765543 45


Q ss_pred             cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHH--HHHHHh-ccchhHHHHHHHHHHHhcCCCc
Q 012466          375 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENA--FAEILF-SDGRYSDTFARILYELTSRPNN  451 (463)
Q Consensus       375 ~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~--l~~i~~-sD~~~~~~~~~iL~~l~~~~~~  451 (463)
                      ...+.+..|++++.+. +..+....|+..+.+++..++|+..+....-.  |..+.- .|+++.......|..++.....
T Consensus       182 ~~~~~~~~L~~ll~~~-~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~  260 (529)
T d1jdha_         182 LASGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  260 (529)
T ss_dssp             HHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT
T ss_pred             HhcccchHHHHHHHhh-hhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc
Confidence            6678899999999664 24567788999999999999999988765422  221111 2556666666666666655544


Q ss_pred             c
Q 012466          452 K  452 (463)
Q Consensus       452 ~  452 (463)
                      +
T Consensus       261 ~  261 (529)
T d1jdha_         261 Q  261 (529)
T ss_dssp             C
T ss_pred             h
Confidence            4
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure