Citrus Sinensis ID: 012479
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 462 | 2.2.26 [Sep-21-2011] | |||||||
| Q05758 | 591 | Ketol-acid reductoisomera | yes | no | 0.887 | 0.693 | 0.873 | 0.0 | |
| O82043 | 581 | Ketol-acid reductoisomera | N/A | no | 0.987 | 0.784 | 0.800 | 0.0 | |
| Q01292 | 595 | Ketol-acid reductoisomera | N/A | no | 0.956 | 0.742 | 0.786 | 0.0 | |
| Q65XK0 | 578 | Ketol-acid reductoisomera | yes | no | 0.846 | 0.676 | 0.874 | 0.0 | |
| P78827 | 404 | Probable ketol-acid reduc | yes | no | 0.686 | 0.784 | 0.331 | 3e-39 | |
| P38674 | 402 | Ketol-acid reductoisomera | N/A | no | 0.664 | 0.763 | 0.327 | 4e-39 | |
| P06168 | 395 | Ketol-acid reductoisomera | yes | no | 0.634 | 0.741 | 0.313 | 5e-33 | |
| B3QSP0 | 338 | Ketol-acid reductoisomera | yes | no | 0.450 | 0.615 | 0.351 | 5e-28 | |
| A9BGP6 | 330 | Ketol-acid reductoisomera | yes | no | 0.443 | 0.621 | 0.347 | 7e-28 | |
| Q8DW43 | 340 | Ketol-acid reductoisomera | yes | no | 0.458 | 0.623 | 0.346 | 8e-28 |
| >sp|Q05758|ILV5_ARATH Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/410 (87%), Positives = 381/410 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 420
Query: 413 GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
GLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQ+
Sbjct: 421 GLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQI 470
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 6 |
| >sp|O82043|ILV5_PEA Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/466 (80%), Positives = 404/466 (86%), Gaps = 10/466 (2%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETLKE----ALKHLNLASFSSTAKSLRALKTTTGRGSAL 56
MAA T S I S SS+TL + + NL+ + +S+RA ++ T GSAL
Sbjct: 1 MAAVTSSCSTAI-----SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSIT-VGSAL 54
Query: 57 SAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGV 116
A S P LDFETSVFKK+ ++LA +EYIVRGGRDLF+LLPDAF GI QIGV
Sbjct: 55 GATKVSAPPATHPVSLDFETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGV 114
Query: 117 IGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176
IGWGSQGPAQAQNLRDSL EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETI
Sbjct: 115 IGWGSQGPAQAQNLRDSLVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETI 174
Query: 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVC 236
SGSDLVLLLISD+AQADNYEKIFS +KPNSILGLSHGFLLGHLQS+GLDFPKN VIAVC
Sbjct: 175 SGSDLVLLLISDSAQADNYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVC 234
Query: 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQ 296
PKGMGPSVRRLYVQGKEINGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQ
Sbjct: 235 PKGMGPSVRRLYVQGKEINGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQ 294
Query: 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGML 356
EY+SDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVE ITG+ISK ISTQGML
Sbjct: 295 EYKSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVESITGVISKTISTQGML 354
Query: 357 AVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPA 416
AVYN+ S + KKEFEKAYSAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPA
Sbjct: 355 AVYNALSEDGKKEFEKAYSASFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPA 414
Query: 417 FPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
FPMGKIDQTRMWKVGERVRSTRPAGDLGPL+PFTAGV+ A+MMAQ+
Sbjct: 415 FPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQI 460
|
Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q01292|ILV5_SPIOL Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1 | Back alignment and function description |
|---|
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/458 (78%), Positives = 399/458 (87%), Gaps = 16/458 (3%)
Query: 14 KFSPSPSSETLKEALKHLNLASFSSTAKSLRALKTT-------TGRGSALSAWMASETAL 66
K SP PS+ +L SST K+ R+LK G GSALSA M S ++
Sbjct: 26 KQSPKPSA-------LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAPSI 78
Query: 67 KTP--FLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGP 124
TP DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ P
Sbjct: 79 NTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAP 138
Query: 125 AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184
AQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLL
Sbjct: 139 AQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLL 198
Query: 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244
LISD+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSV
Sbjct: 199 LISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSV 258
Query: 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFG 304
RRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEY+SDIFG
Sbjct: 259 RRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDIFG 318
Query: 305 ERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364
ERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+GMLA+YNS S
Sbjct: 319 ERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSE 378
Query: 365 EDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQ 424
E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQ
Sbjct: 379 EGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQ 438
Query: 425 TRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
TRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQ+
Sbjct: 439 TRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQI 476
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q65XK0|ILV5_ORYSJ Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/391 (87%), Positives = 367/391 (93%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 68 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 127
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 128 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 187
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 188 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 247
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 248 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 307
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 308 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 367
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG 431
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVG
Sbjct: 368 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVG 427
Query: 432 ERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
E+VRSTRP DLGPLHPFTAGVY ALMMAQ+
Sbjct: 428 EKVRSTRPENDLGPLHPFTAGVYVALMMAQI 458
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P78827|ILV5_SCHPO Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ilv5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/341 (33%), Positives = 175/341 (51%), Gaps = 24/341 (7%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMG 223
TL + E I +++ L+SDAAQ + + KI + L SHGF +
Sbjct: 131 P-GKTLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS F + TT ++E SD+ GERG L+G ++G+ + ++ E G + A+ TVE T
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEAT 304
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVL 403
+ +I G+ ++ + S ++ ++L E Y++V G+E + +
Sbjct: 305 QSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKRSLE 364
Query: 404 AG-----RRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
R Y+KE + +I +WK GE VRS RP
Sbjct: 365 YNSAPNYRELYDKE------LEEIRNLEIWKAGEVVRSLRP 399
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P38674|ILV5_NEUCR Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ilv-2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 173/336 (51%), Gaps = 29/336 (8%)
Query: 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171
+ + +IG+GSQG Q NLRD+ + V VG+RK +S+ +A G+ L D
Sbjct: 84 DTLALIGYGSQGHGQGLNLRDN------GLNVIVGVRKNGKSWEDAIQDGWVP-GKNLFD 136
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
+ E IS +V+ L+SDAAQ++ + I + L SHGF ++ P ++
Sbjct: 137 VDEAISRGTIVMNLLSDAAQSETWPHIKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVD 196
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA 291
VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+ VA+GS + +
Sbjct: 197 VILVAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGKAKEKAVALGVAVGSGYLYE 251
Query: 292 TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIS 351
TT E+E SD++GERG L+G +HG+ + + E G + A+ TVE T + +I
Sbjct: 252 TTFEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIG 311
Query: 352 TQGMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAG--- 405
GM ++++ S ++ ++ + + P LY+ V G E + +
Sbjct: 312 AHGMDWMFDACSTTARRGAIDWTPKFKDALKPVFNNLYDS---VKNGDETKRSLEYNSQP 368
Query: 406 --RRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
R YE E + +I +W+ G+ VRS RP
Sbjct: 369 DYRERYEAE------LDEIRNLEIWRAGKAVRSLRP 398
|
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P06168|ILV5_YEAST Ketol-acid reductoisomerase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ILV5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 157/316 (49%), Gaps = 23/316 (7%)
Query: 129 NLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188
NLRD+ + V +G+RK S+ A G+ L + + I V+ L+SD
Sbjct: 95 NLRDN------GLNVIIGVRKDGASWKAAIEDGWVP-GKNLFTVEDAIKRGSYVMNLLSD 147
Query: 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248
AAQ++ + I + L SHGF ++ PK++ VI V PKG G +VR L+
Sbjct: 148 AAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDLTHVEPPKDLDVILVAPKGSGRTVRSLF 207
Query: 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI 308
+G+ GINSS+AV DV G+A A +VA+GS + + TT E+E SD++GERG
Sbjct: 208 KEGR-----GINSSYAVWNDVTGKAHEKAQALAVAIGSGYVYQTTFEREVNSDLYGERGC 262
Query: 309 LLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKK 368
L+G +HG+ + + ENG + A+ TVE T + +I GM +Y++ S ++
Sbjct: 263 LMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEATQSLYPLIGKYGMDYMYDACSTTARR 322
Query: 369 EFEKAYSASYYPCME-----ILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKID 423
+ +YP + + + YE G+E + + + +E L + I
Sbjct: 323 G-----ALDWYPIFKNALKPVFQDLYESTKNGTETKRSLEFNSQPDYREKLEK-ELDTIR 376
Query: 424 QTRMWKVGERVRSTRP 439
+WKVG+ VR RP
Sbjct: 377 NMEIWKVGKEVRKLRP 392
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|B3QSP0|ILVC_CHLT3 Ketol-acid reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 122/233 (52%), Gaps = 25/233 (10%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I V+G+GSQG A A NL+DS + V VGL++ S S+ +A AG E
Sbjct: 18 KIAVLGFGSQGHAHALNLKDS------GMNVCVGLKENSASWVKAEKAGLMVEKTA---- 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D++++LI D Q YE I +KP L HGF + + Q + P N+
Sbjct: 68 -EAVKWADIIMVLIPDQVQKAVYENDIAPNLKPGDTLAFGHGFNIHYKQIVP---PANVN 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFT 289
VI + PK G VRR +V+G AG+ AVHQ+VDG+A ++AL W+ LG
Sbjct: 124 VIMIAPKSPGHLVRRTFVEG-----AGVPCLIAVHQNVDGKAKDIALAWAKGLGGTKAGV 178
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
T + E +D+FGE+ +L G ++++ F E G +LAY EC+
Sbjct: 179 IETNFKDETETDLFGEQAVLCGGSAELIKAGFDTLVEGGYPAELAY---FECM 228
|
Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|A9BGP6|ILVC_PETMO Ketol-acid reductoisomerase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 126/236 (53%), Gaps = 31/236 (13%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I V+G+GSQG AQAQNL+DS + V +GL+K S+S A+ GF ++Y
Sbjct: 20 IAVLGYGSQGHAQAQNLKDS------GLKVIIGLKKDSKSKETAQRDGF--------EVY 65
Query: 174 ET---ISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN 229
ET + D++ +LI D Q++ Y+K I + + LG SHGF + Q + PKN
Sbjct: 66 ETSEAVKKGDIIQVLIPDEVQSEVYKKDIEPNLDEGNALGFSHGFNIHFGQIVP---PKN 122
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF- 288
+ V V PK G VRR+Y++GK G+ AVHQD G+A + L ++ +G
Sbjct: 123 VDVFMVAPKSPGHLVRRMYLEGK-----GVPGLLAVHQDFSGKAKELGLSYAKGIGCTRA 177
Query: 289 -TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
TT ++E +D+FGE+ +L G ++++ F E G ++AY EC+
Sbjct: 178 GVIKTTFKEETETDLFGEQAVLCGGTTSLIKAGFETLVEAGYQPEIAY---FECLN 230
|
Petrotoga mobilis (strain DSM 10674 / SJ95) (taxid: 403833) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q8DW43|ILVC_STRMU Ketol-acid reductoisomerase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 132/245 (53%), Gaps = 33/245 (13%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A AQNLRDS D+++ G+R G +SF +A+ GF D
Sbjct: 20 KIAVIGYGSQGHAHAQNLRDS----GHDVII--GVRHG-KSFDKAKEDGF--------DT 64
Query: 173 YETISGS---DLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFLL--GHLQSMGLDF 226
YE + D++++L D Q D Y ++I + LG +HGF + G++++
Sbjct: 65 YEVGEATKLADIIMVLAPDEIQKDIYKDEIAPNLSAGKALGFAHGFNIHFGYIKA----- 119
Query: 227 PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
P+++ V V PKG G VRR Y +G G+ S +AV+Q+ G A N+AL W+ +GS
Sbjct: 120 PEDVDVFMVAPKGPGHLVRRTYTEG-----FGVPSLYAVYQNPTGNAENIALDWAKGIGS 174
Query: 287 PFT--FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG 344
TT ++E D+FGE+ +L+G + ++E+ F TE G LAY + +
Sbjct: 175 ARVGLLVTTFKEETEEDLFGEQAVLMGGLTHLIEAGFEVLTEAGYAPQLAYFEVLHEMKL 234
Query: 345 IISKI 349
I+ I
Sbjct: 235 IVDLI 239
|
Streptococcus mutans (taxid: 1309) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 462 | ||||||
| 225446579 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.956 | 0.751 | 0.841 | 0.0 | |
| 255568281 | 584 | ketol-acid reductoisomerase, chloroplast | 0.991 | 0.784 | 0.816 | 0.0 | |
| 224079219 | 589 | predicted protein [Populus trichocarpa] | 0.926 | 0.726 | 0.851 | 0.0 | |
| 356549858 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.932 | 0.735 | 0.848 | 0.0 | |
| 341958461 | 587 | chloroplast acetohydroxy acid isomerored | 0.932 | 0.734 | 0.848 | 0.0 | |
| 449438145 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.991 | 0.778 | 0.802 | 0.0 | |
| 356543900 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.932 | 0.735 | 0.843 | 0.0 | |
| 295291644 | 587 | ketol-acid reductoisomerase [Catharanthu | 0.958 | 0.754 | 0.835 | 0.0 | |
| 15231092 | 591 | ketol-acid reductoisomerase [Arabidopsis | 0.887 | 0.693 | 0.873 | 0.0 | |
| 297817174 | 594 | ketol-acid reductoisomerase [Arabidopsis | 0.887 | 0.690 | 0.875 | 0.0 |
| >gi|225446579|ref|XP_002280094.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera] gi|147767264|emb|CAN69003.1| hypothetical protein VITISV_005408 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/449 (84%), Positives = 407/449 (90%), Gaps = 7/449 (1%)
Query: 21 SETLKEALKHL--NLASFSSTA-KSLRA--LKTTT--GRGSALSAWMASETALKTPFLLD 73
++TLK +L NL SS A +SLRA L T++ G GSAL+A M S +K P LLD
Sbjct: 19 TKTLKSDSTNLSPNLGFLSSKAFQSLRARVLPTSSVGGTGSALAARMVSTPLIKPPALLD 78
Query: 74 FETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ +SLA DEYIVRGGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 79 FETSVFKKEKVSLAGHDEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 138
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKS+IVVK+GLRKGS+SFAEARAAGFTEENGTLGDIYETISGSDLV+LLISD+AQAD
Sbjct: 139 LVEAKSNIVVKIGLRKGSKSFAEARAAGFTEENGTLGDIYETISGSDLVMLLISDSAQAD 198
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS MKPNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 199 NYEKIFSHMKPNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKE 258
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV 313
+NGAGINSSFAV QDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLGAV
Sbjct: 259 VNGAGINSSFAVQQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAV 318
Query: 314 HGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373
HGIVESLFRR+TE+G +EDLAYKNTVECITGIISK ISTQGMLAVYN+ S + KKEFE A
Sbjct: 319 HGIVESLFRRYTEHGTSEDLAYKNTVECITGIISKTISTQGMLAVYNALSEDGKKEFEAA 378
Query: 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGER 433
YSASYYPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEK+GLPAFPMGKIDQTRMWKVGER
Sbjct: 379 YSASYYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKDGLPAFPMGKIDQTRMWKVGER 438
Query: 434 VRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
VRS RPAGDLGPL PFTAGVY ALMMAQ+
Sbjct: 439 VRSVRPAGDLGPLCPFTAGVYVALMMAQI 467
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568281|ref|XP_002525115.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] gi|223535574|gb|EEF37242.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/464 (81%), Positives = 407/464 (87%), Gaps = 6/464 (1%)
Query: 3 AATLPFSRPIPKFSPSPSSETLKEALKHLNLASFSST---AKSLRALKTTTGRGSALSAW 59
+AT FS +PK P+P T K +L++ +KS ++L+ G GSA+ A
Sbjct: 2 SATASFSATLPK--PTPFLSTPKSISSSSSLSTLGFLSIRSKSFKSLRANGGGGSAVGAC 59
Query: 60 -MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIG 118
M S A+K LDFET+VFKK+ ISLA DEYIVRGGRDLF LLPDAF GI QIGVIG
Sbjct: 60 SMVSMPAVKPLISLDFETTVFKKEKISLAGHDEYIVRGGRDLFKLLPDAFKGIKQIGVIG 119
Query: 119 WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178
WGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSFAEAR+AGFTEENGTLGDI+ET+SG
Sbjct: 120 WGSQGPAQAQNLRDSLGEAKSDIVVKIGLRKGSRSFAEARSAGFTEENGTLGDIWETVSG 179
Query: 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPK 238
SDLVLLLISDAAQADNYEK+FS MKPNSILGLSHGFLLGHLQSMGLDFPKNI VIAVCPK
Sbjct: 180 SDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPK 239
Query: 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298
GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY
Sbjct: 240 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEY 299
Query: 299 RSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAV 358
+SDIFGERGILLGAVHGIVESLFRR+TENGM+ED AYKNTVECITGIISK ISTQGMLAV
Sbjct: 300 KSDIFGERGILLGAVHGIVESLFRRYTENGMSEDEAYKNTVECITGIISKTISTQGMLAV 359
Query: 359 YNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP 418
YNS S E KK+FE AYSASYYPCM+ILYECYEDVA GSEIRSVVLAGRRFYE++GLPAFP
Sbjct: 360 YNSLSEEGKKQFETAYSASYYPCMDILYECYEDVACGSEIRSVVLAGRRFYERDGLPAFP 419
Query: 419 MGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
MGKIDQTRMWKVGERVRSTR AGDLGPL PFTAGVY ALMMAQ+
Sbjct: 420 MGKIDQTRMWKVGERVRSTRAAGDLGPLDPFTAGVYVALMMAQI 463
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079219|ref|XP_002305797.1| predicted protein [Populus trichocarpa] gi|222848761|gb|EEE86308.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/431 (85%), Positives = 393/431 (91%), Gaps = 3/431 (0%)
Query: 35 SFSSTAKSLRALKTTTGR--GSALSAWMASETALKTPFL-LDFETSVFKKDMISLADRDE 91
S S ++K+ + LK + G G L A M S P + LDFETSVFKK+ +SLA DE
Sbjct: 38 SSSVSSKTFKPLKASNGNVTGGVLGAKMVSSVPSVKPLISLDFETSVFKKEKVSLAGHDE 97
Query: 92 YIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151
YIVRGGRDLF+LLPDAF GI QIGV+GWGSQGPAQAQNLRDSLAEAKSDI VK+GLRKGS
Sbjct: 98 YIVRGGRDLFHLLPDAFKGIKQIGVLGWGSQGPAQAQNLRDSLAEAKSDIKVKIGLRKGS 157
Query: 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211
RSFAEARAAGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSILGLS
Sbjct: 158 RSFAEARAAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLS 217
Query: 212 HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271
HGFLLGHLQSMGLDFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDG
Sbjct: 218 HGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDG 277
Query: 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNE 331
RAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+E
Sbjct: 278 RATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSE 337
Query: 332 DLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYED 391
D AYKNTVECITGIIS+ IST+GMLAVYNS + E KKEFE AYSAS+YPCM+ILYECYED
Sbjct: 338 DEAYKNTVECITGIISRTISTKGMLAVYNSLTPEGKKEFETAYSASFYPCMDILYECYED 397
Query: 392 VAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTA 451
VA+GSEIRSVVLAGRRFYEKEGLP FPMGKIDQTRMWKVGERVR+TRPAGDLGPLHPFTA
Sbjct: 398 VASGSEIRSVVLAGRRFYEKEGLPDFPMGKIDQTRMWKVGERVRATRPAGDLGPLHPFTA 457
Query: 452 GVYAALMMAQV 462
GVY ALMMAQ+
Sbjct: 458 GVYVALMMAQI 468
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549858|ref|XP_003543307.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/435 (84%), Positives = 399/435 (91%), Gaps = 4/435 (0%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SLR + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG+VESLFRR+TEN
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRRYTEN 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMNEDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSAS+YPCMEILYE
Sbjct: 332 GMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASFYPCMEILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 447
CYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVRSTRPAGD GPL+
Sbjct: 392 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRSTRPAGDQGPLY 451
Query: 448 PFTAGVYAALMMAQV 462
PFTAGV+ ALMMAQ+
Sbjct: 452 PFTAGVFVALMMAQI 466
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|341958461|gb|AEL13846.1| chloroplast acetohydroxy acid isomeroreductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/435 (84%), Positives = 399/435 (91%), Gaps = 4/435 (0%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SLR + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG+VESLFRR+TEN
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRRYTEN 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMNEDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSAS+YPCMEILYE
Sbjct: 332 GMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASFYPCMEILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 447
CYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVRSTRPAGD GPL+
Sbjct: 392 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRSTRPAGDQGPLY 451
Query: 448 PFTAGVYAALMMAQV 462
PFTAGV+ ALMMAQ+
Sbjct: 452 PFTAGVFVALMMAQI 466
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438145|ref|XP_004136850.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] gi|449526744|ref|XP_004170373.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/472 (80%), Positives = 410/472 (86%), Gaps = 14/472 (2%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETLKEALKHLNLA-----SFSSTAKSLRALKTT-----T 50
MAAAT F+ P S S S++TLK A LA SS++ L ALK
Sbjct: 1 MAAATTHFA---PSISAS-SAKTLKHAAALHPLAPSSLSFLSSSSSGLNALKAVGISAAN 56
Query: 51 GRGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNG 110
G GSAL A M S A+K LDF+TSVFKK+ ++LA DEYIVRGGRDLF LLP+AF G
Sbjct: 57 GIGSALGARMVSVPAIKPLISLDFDTSVFKKEKVNLAGHDEYIVRGGRDLFPLLPEAFKG 116
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I +IGVIGWGSQ PAQAQNLRDSLAEAKSDIVVK+GLRKGSRSFAEARA GF+EENGTLG
Sbjct: 117 IKKIGVIGWGSQAPAQAQNLRDSLAEAKSDIVVKIGLRKGSRSFAEARAVGFSEENGTLG 176
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNI 230
DIYETIS SDLV+LLISD+AQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI
Sbjct: 177 DIYETISESDLVMLLISDSAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNI 236
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTF
Sbjct: 237 SVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTF 296
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKII 350
ATTLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM E+LAYKNTVE ITGIIS+ I
Sbjct: 297 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMAEELAYKNTVESITGIISRTI 356
Query: 351 STQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYE 410
ST+GMLAVYNSFS ++KKEFE+AYSASYYPCM+ILYECYEDVA+GSEIRSVVLAGRRFYE
Sbjct: 357 STKGMLAVYNSFSPDEKKEFERAYSASYYPCMDILYECYEDVASGSEIRSVVLAGRRFYE 416
Query: 411 KEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
KEGLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQ+
Sbjct: 417 KEGLPAFPMGNIDQTRMWKVGERVRQSRPAGDLGPLYPFTAGVYVALMMAQI 468
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543900|ref|XP_003540396.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/435 (84%), Positives = 398/435 (91%), Gaps = 4/435 (0%)
Query: 32 NLASFSSTAK----SLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLA 87
NLA SS++K SL+ + GSAL A M S A+K P LLDF+T VFKK+ I+LA
Sbjct: 32 NLALQSSSSKLGFKSLKLHRCAAAAGSALGARMVSAPAVKAPALLDFDTKVFKKEKINLA 91
Query: 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DEYIV+GGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GL
Sbjct: 92 GHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 151
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MKPNSI
Sbjct: 152 RKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMKPNSI 211
Query: 208 LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 212 LGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 271
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327
DVDGRAT+VALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG+VESLFRR+T+N
Sbjct: 272 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGVVESLFRRYTDN 331
Query: 328 GMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387
GMNEDLAYKNTVE ITGIISK IST+GMLAVYN+ S ++K+EFEKAYSASYYPCMEILYE
Sbjct: 332 GMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASYYPCMEILYE 391
Query: 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 447
CYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVRSTR AGD GPL+
Sbjct: 392 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRSTRAAGDQGPLY 451
Query: 448 PFTAGVYAALMMAQV 462
PFTAGV+ ALMMAQ+
Sbjct: 452 PFTAGVFVALMMAQI 466
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|295291644|gb|ADF87507.1| ketol-acid reductoisomerase [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/451 (83%), Positives = 404/451 (89%), Gaps = 8/451 (1%)
Query: 20 SSETLKEALKH--LNLASFSSTAKSL-----RALKTTTGRGSALSAWMASE-TALKTPFL 71
+++TLK K NL+ SS+ SL RA TT GSA++A M S A+K P
Sbjct: 17 ATKTLKHPTKTSVHNLSFLSSSTPSLKHLAARAASFTTSCGSAVAARMVSTPAAVKPPTN 76
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDFETSVFKK+ I+LA +EYIVRGGRDLFNLLPDAF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 77 LDFETSVFKKEKINLAGHEEYIVRGGRDLFNLLPDAFKGIKQIGVIGWGSQGPAQAQNLR 136
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAE KSDI+VK+GLRKGSRSFAEARAAGF+EENGTLGDIYETISGSDLVLLLISDAAQ
Sbjct: 137 DSLAETKSDILVKIGLRKGSRSFAEARAAGFSEENGTLGDIYETISGSDLVLLLISDAAQ 196
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYE++FS MKPNSILGLSHGFLLGHLQSMGLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 197 ADNYEQVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQG 256
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 257 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 316
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVESLFRR+TENGM E+LAYKNTVECITGIISK IST+GMLAVYN+ + E+KKEFE
Sbjct: 317 AVHGIVESLFRRYTENGMAEELAYKNTVECITGIISKTISTKGMLAVYNALTEEEKKEFE 376
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG 431
AYSAS+YPCM+ILYECYEDVA GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG
Sbjct: 377 TAYSASFYPCMDILYECYEDVATGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG 436
Query: 432 ERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
ERVRS RP GDLGPL PFTAGVY ALMMAQ+
Sbjct: 437 ERVRSVRPTGDLGPLCPFTAGVYVALMMAQI 467
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231092|ref|NP_191420.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|145332887|ref|NP_001078309.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|334186086|ref|NP_001190127.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|12644387|sp|Q05758.2|ILV5_ARATH RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|11692838|gb|AAG40022.1|AF324671_1 AT3g58610 [Arabidopsis thaliana] gi|11993867|gb|AAG42917.1|AF329500_1 putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|402552|emb|CAA49506.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|6735378|emb|CAB68199.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|17063195|gb|AAL32973.1| AT3g58610/F14P22_200 [Arabidopsis thaliana] gi|17529224|gb|AAL38839.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|20465493|gb|AAM20206.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23397061|gb|AAN31816.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23463055|gb|AAN33197.1| At3g58610/F14P22_200 [Arabidopsis thaliana] gi|332646283|gb|AEE79804.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646284|gb|AEE79805.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646285|gb|AEE79806.1| ketol-acid reductoisomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/410 (87%), Positives = 381/410 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 420
Query: 413 GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
GLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQ+
Sbjct: 421 GLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQI 470
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817174|ref|XP_002876470.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] gi|297322308|gb|EFH52729.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/410 (87%), Positives = 379/410 (92%)
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+LSA M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 64 GSSLSARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 123
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE GTLGDI
Sbjct: 124 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEETGTLGDI 183
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
+ETISGSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 184 WETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 243
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 244 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 303
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 304 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 363
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 364 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 423
Query: 413 GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
GLPAFPMG IDQTRMWKVGE VR +RPAGDLGPL+PFTAGVY ALMMAQ+
Sbjct: 424 GLPAFPMGNIDQTRMWKVGEGVRKSRPAGDLGPLYPFTAGVYVALMMAQI 473
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 462 | ||||||
| TAIR|locus:2076371 | 591 | AT3G58610 [Arabidopsis thalian | 1.0 | 0.781 | 0.782 | 3e-188 | |
| UNIPROTKB|Q01292 | 595 | AHRI "Ketol-acid reductoisomer | 0.997 | 0.774 | 0.744 | 1.8e-181 | |
| UNIPROTKB|Q65XK0 | 578 | LOC_Os05g49800 "Ketol-acid red | 0.889 | 0.711 | 0.813 | 1.2e-175 | |
| CGD|CAL0000685 | 400 | ILV5 [Candida albicans (taxid: | 0.690 | 0.797 | 0.337 | 1.7e-36 | |
| ASPGD|ASPL0000041782 | 400 | AN2526 [Emericella nidulans (t | 0.735 | 0.85 | 0.310 | 7.2e-36 | |
| POMBASE|SPBC56F2.12 | 404 | ilv5 "acetohydroxyacid reducto | 0.686 | 0.784 | 0.322 | 2.4e-35 | |
| UNIPROTKB|G4MW52 | 400 | MGG_15774 "Ketol-acid reductoi | 0.668 | 0.772 | 0.315 | 5.1e-35 | |
| SGD|S000004347 | 395 | ILV5 "Acetohydroxyacid reducto | 0.694 | 0.812 | 0.314 | 5.8e-34 | |
| TIGR_CMR|CHY_0519 | 330 | CHY_0519 "ketol-acid reductois | 0.450 | 0.630 | 0.334 | 6.8e-25 | |
| TIGR_CMR|GSU_1909 | 338 | GSU_1909 "ketol-acid reductois | 0.493 | 0.674 | 0.307 | 4.7e-22 |
| TAIR|locus:2076371 AT3G58610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1825 (647.5 bits), Expect = 3.0e-188, P = 3.0e-188
Identities = 368/470 (78%), Positives = 398/470 (84%)
Query: 1 MAAATLPFSRPIPKFSPSPSSETL----KEALKHLNLASFSSTAKSLRALKTTTG----R 52
MAAAT + + SPS SS+TL L N+ SS++KSLR+L T
Sbjct: 1 MAAATSSIAPSLSCPSPSSSSKTLWSSKARTLALPNIGFLSSSSKSLRSLTATVAGNGAT 60
Query: 53 GSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGIN 112
GS+L+A M S +A+K P LDFETSVFKK+ +SLA +EYIVRGGRDLF LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIIST 352
TLEQEYRSDIFGERGILLGAVHGIVESLFRR+TENGM+EDLAYKNTVECITG IS+ IST
Sbjct: 301 TLEQEYRSDIFGERGILLGAVHGIVESLFRRYTENGMSEDLAYKNTVECITGTISRTIST 360
Query: 353 QGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKE 412
QGMLAVYNS S E KK+FE AYSAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKE
Sbjct: 361 QGMLAVYNSLSEEGKKDFETAYSASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKE 420
Query: 413 GLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
GLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQ+
Sbjct: 421 GLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQI 470
|
|
| UNIPROTKB|Q01292 AHRI "Ketol-acid reductoisomerase, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1761 (625.0 bits), Expect = 1.8e-181, P = 1.8e-181
Identities = 353/474 (74%), Positives = 396/474 (83%)
Query: 2 AAATLPFSRPIPKFSPSPSSETLKEALKH--LNLASF--SSTAKSLRALKTT-------T 50
A A FS + + +S+ LK++ K LNL SST K+ R+LK
Sbjct: 3 ATAATTFSLSSSSSTSAAASKALKQSPKPSALNLGFLGSSSTIKACRSLKAARVLPSGAN 62
Query: 51 GRGSALSAWMASETALKTPFL--LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAF 108
G GSALSA M S ++ TP DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF
Sbjct: 63 GGGSALSAQMVSAPSINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAF 122
Query: 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168
GI QIGVIGWGSQ PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGT
Sbjct: 123 KGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGT 182
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPK 228
LGD++ETISGSDLVLLLISD+AQADNYEK+FS MKPNSI QS+G DFPK
Sbjct: 183 LGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPK 242
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
NI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPF
Sbjct: 243 NISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPF 302
Query: 289 TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISK 348
TFATTLEQEY+SDIFGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK
Sbjct: 303 TFATTLEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISK 362
Query: 349 IISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRF 408
IST+GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRF
Sbjct: 363 TISTKGMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRF 422
Query: 409 YEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
YEKEGLPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQ+
Sbjct: 423 YEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQI 476
|
|
| UNIPROTKB|Q65XK0 LOC_Os05g49800 "Ketol-acid reductoisomerase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1706 (605.6 bits), Expect = 1.2e-175, P = 1.2e-175
Identities = 335/412 (81%), Positives = 365/412 (88%)
Query: 52 RGSALSAWMASETALKTPF-LLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNG 110
R A++A +A+ A+ LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF G
Sbjct: 47 RRRAVTAMVAAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKG 106
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLG
Sbjct: 107 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLG 166
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNI 230
DI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI
Sbjct: 167 DIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNI 226
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTF
Sbjct: 227 SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTF 286
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKII 350
ATTLEQEY+SDIFGERGILLGAVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK I
Sbjct: 287 ATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTI 346
Query: 351 STQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYE 410
S +GML VYNS + E KKEF KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYE
Sbjct: 347 SKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYE 406
Query: 411 KEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
KEGLPAFPMG IDQTRMWKVGE+VRSTRP DLGPLHPFTAGVY ALMMAQ+
Sbjct: 407 KEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQI 458
|
|
| CGD|CAL0000685 ILV5 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 114/338 (33%), Positives = 168/338 (49%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + +IG+GSQG Q NLRD+ + V +G+RKGS S+ A G+
Sbjct: 77 LLDYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKGS-SWEAAVEDGWV 128
Query: 164 E-ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSM 222
EN L ++ E IS +++ L+SDAAQ++ + I +
Sbjct: 129 PGEN--LFEVDEAISRGTIIMDLLSDAAQSETWFHIKPQLTEGKTLYFSHGFSPVFKDLT 186
Query: 223 GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV 282
++ P NI VI PKG G +VR L+ +G+ GINSS+AV DV G+A A+ ++
Sbjct: 187 HVEPPSNIDVILAAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAEEKAIAMAI 241
Query: 283 ALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A+GS + + TT E+E SD++GERG L+G +HG+ + + ENG A+ TVE
Sbjct: 242 AIGSGYVYKTTFEREVNSDLYGERGCLMGGIHGMFLAQYEVLRENGHTPSEAFNETVEEA 301
Query: 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI-RSV 401
T + +I GM +Y++ S ++ Y + E YE V GSE RS+
Sbjct: 302 TQSLYPLIGKYGMDYMYDACSTTARRGALDWYPRFKDALKPVFEELYESVKNGSETKRSL 361
Query: 402 VLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
R Y KE L I +W+VG+ VR RP
Sbjct: 362 EFNSRSDY-KERLEE-EFQTIRNMEIWRVGKEVRKLRP 397
|
|
| ASPGD|ASPL0000041782 AN2526 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 111/358 (31%), Positives = 177/358 (49%)
Query: 84 ISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
IS AD E + L + F + + +IG+GSQG Q NLRD + V
Sbjct: 55 ISFADSQETVYERADWPREKLQEYFKN-DTLALIGYGSQGHGQGLNLRDQ------GLNV 107
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
VG+RK S+ EA G+ L ++ E + +V+ L+SDAAQ++ + + +
Sbjct: 108 IVGVRKDGASWKEAIQDGWVPGKN-LFEVTEAVQKGTIVMNLLSDAAQSETWPTLKPLIT 166
Query: 204 PNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
+ +D P ++ VI V PKG G +VR L+ +G+ GINSS
Sbjct: 167 KGKTLYFSHGFSPVFKEKTKVDVPSDVDVILVAPKGSGRTVRTLFREGR-----GINSSI 221
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR 323
AV QDV G A A+ VA+GS + + TT E+E SD++GERG L+G +HG+ + +
Sbjct: 222 AVFQDVTGNAKEKAIAMGVAVGSGYLYETTFEKEVYSDLYGERGCLMGGIHGMFLAQYEV 281
Query: 324 FTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME 383
E G + A+ TVE T + +I GM +Y + S ++ +S+ + ++
Sbjct: 282 LRERGHSPSEAFNETVEEATQSLYPLIGANGMDWMYAACSTTARRGAID-WSSRFKDNLK 340
Query: 384 ILY-ECYEDVAAGSEI-RSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
L+ E Y+ V G+E RS+ ++ Y ++ M +I +W+ G+ VRS RP
Sbjct: 341 PLFNELYDSVRDGTETQRSLDYNSQKDYREKYEKE--MQEIRDLEIWRAGKAVRSLRP 396
|
|
| POMBASE|SPBC56F2.12 ilv5 "acetohydroxyacid reductoisomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 110/341 (32%), Positives = 170/341 (49%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMG 223
TL + E I +++ L+SDAAQ + + KI +
Sbjct: 131 PGK-TLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS F + TT ++E SD+ GERG L+G ++G+ + ++ E G + A+ TVE T
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERGCLMGGINGLFLAQYQVLRERGHSPAEAFNETVEEAT 304
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI-RSVV 402
+ +I G+ ++ + S ++ ++L E Y++V G+E RS+
Sbjct: 305 QSLYPLIGKYGLDYMFAACSTTARRGAIDWTPRFLEANKKVLNELYDNVENGNEAKRSLE 364
Query: 403 LAG----RRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
R Y+KE + +I +WK GE VRS RP
Sbjct: 365 YNSAPNYRELYDKE------LEEIRNLEIWKAGEVVRSLRP 399
|
|
| UNIPROTKB|G4MW52 MGG_15774 "Ketol-acid reductoisomerase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 104/330 (31%), Positives = 168/330 (50%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG Q NLRD+ + V +G+RK +S+ +A G+ L ++
Sbjct: 84 LALIGYGSQGHGQGLNLRDN------GLNVIIGVRKDGKSWKDAVQDGWVPGKN-LFEVD 136
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVI 233
E IS +++ L+SDAAQ++ + + + ++ P ++ VI
Sbjct: 137 EAISRGTVIMNLLSDAAQSETWPALKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVDVI 196
Query: 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
PKG G +VR L+ +G+ GINSSFAV+QDV G A A+ VA+GS + + TT
Sbjct: 197 LCAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGEAEEKAIALGVAIGSGYLYKTT 251
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
E+E SD++GERG L+G +HG+ + + E G + A+ TVE T + +I
Sbjct: 252 FEKEVYSDLYGERGCLMGGIHGMFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAN 311
Query: 354 GMLAVYNSFSGEDKK---EFEKAYSASYYPCMEILYECYEDVAAGSEI-RSVVLAGRRFY 409
GM +Y + S ++ ++ + + P LY+ +D GSE RS+ + Y
Sbjct: 312 GMDWMYEACSTTARRGAIDWSPRFKDALKPVFNQLYDSVKD---GSETQRSLDYNSQPDY 368
Query: 410 EKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
+E A M +I +W+ G+ VRS RP
Sbjct: 369 -REKYEA-EMEEIRNLEIWRAGKAVRSLRP 396
|
|
| SGD|S000004347 ILV5 "Acetohydroxyacid reductoisomerase and mtDNA binding protein" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 106/337 (31%), Positives = 163/337 (48%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + +IG+GSQG Q NLRD+ + V +G+RK S+ A G+
Sbjct: 71 LLDYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKDGASWKAAIEDGWV 123
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMG 223
L + + I V+ L+SDAAQ++ + I +
Sbjct: 124 PGKN-LFTVEDAIKRGSYVMNLLSDAAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDLTH 182
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
++ PK++ VI V PKG G +VR L+ +G+ GINSS+AV DV G+A A +VA
Sbjct: 183 VEPPKDLDVILVAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAHEKAQALAVA 237
Query: 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECIT 343
+GS + + TT E+E SD++GERG L+G +HG+ + + ENG + A+ TVE T
Sbjct: 238 IGSGYVYQTTFEREVNSDLYGERGCLMGGIHGMFLAQYDVLRENGHSPSEAFNETVEEAT 297
Query: 344 GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI-RSVV 402
+ +I GM +Y++ S ++ Y + + YE G+E RS+
Sbjct: 298 QSLYPLIGKYGMDYMYDACSTTARRGALDWYPIFKNALKPVFQDLYESTKNGTETKRSLE 357
Query: 403 LAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
+ Y +E L + I +WKVG+ VR RP
Sbjct: 358 FNSQPDY-REKLEK-ELDTIRNMEIWKVGKEVRKLRP 392
|
|
| TIGR_CMR|CHY_0519 CHY_0519 "ketol-acid reductoisomerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 286 (105.7 bits), Expect = 6.8e-25, P = 6.8e-25
Identities = 78/233 (33%), Positives = 122/233 (52%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I +IG+GSQG AQAQNL+DS + V VGL K S+S +A A GFT + +
Sbjct: 19 KIAIIGYGSQGHAQAQNLKDS------GLNVVVGLHKKSKSREKAEADGFT-----VMKV 67
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIG 231
E +D++ +L+ D Q + Y +KI +KP Q + P ++
Sbjct: 68 DEAAQWADIIQILVPDQIQGELYRDKIEEHLKPGKALMFSHGFNIHYGQIVP---PPDVD 124
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-- 289
V V PK G VRR+Y++GK G+ AV+QD G+A ++AL ++ +G
Sbjct: 125 VFLVAPKSPGHLVRRMYLEGK-----GVPGLIAVYQDATGKAKDLALAYAKGIGCTRAGV 179
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
F TT ++E +D+FGE+ +L G V ++++ F E G ++AY EC+
Sbjct: 180 FETTFKEETETDLFGEQAVLCGGVTHLIKAGFETLVEAGYAPEMAY---FECL 229
|
|
| TIGR_CMR|GSU_1909 GSU_1909 "ketol-acid reductoisomerase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 261 (96.9 bits), Expect = 4.7e-22, P = 4.7e-22
Identities = 79/257 (30%), Positives = 128/257 (49%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ VIG+GSQG A A NL+DS D+VV GL+ S S A+A AG T +
Sbjct: 18 RVAVIGYGSQGHAHANNLKDSGV----DVVV--GLKADSSSVAKATGAGLT-----VLPT 66
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPK-NI 230
+ + G+D+V++L+ D Q D Y E++ +K + Q P+ +I
Sbjct: 67 ADAVKGADVVMILLPDEIQGDVYREEVGPYLKQGAYLAFGHGFNIHFGQIT----PRPDI 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT- 289
VI PKG G VR Y +G G+ A+H D G + +VAL ++ A+G
Sbjct: 123 NVIMAAPKGPGHLVRHEYTRG-----GGVPCLIAIHHDPSGNSRDVALAYASAIGGGRAG 177
Query: 290 -FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGII 346
T+ ++E +D+FGE+ +L G + ++++ F E G + ++AY EC+ T +I
Sbjct: 178 IIETSFKEETETDLFGEQAVLCGGISALIQAGFETLVEAGYSPEMAY---FECLHETKLI 234
Query: 347 SKIISTQGMLAVYNSFS 363
+I G+ + S S
Sbjct: 235 VDLIYEGGIANMRYSIS 251
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q05758 | ILV5_ARATH | 1, ., 1, ., 1, ., 8, 6 | 0.8731 | 0.8874 | 0.6937 | yes | no |
| Q65XK0 | ILV5_ORYSJ | 1, ., 1, ., 1, ., 8, 6 | 0.8746 | 0.8463 | 0.6764 | yes | no |
| Q01292 | ILV5_SPIOL | 1, ., 1, ., 1, ., 8, 6 | 0.7860 | 0.9567 | 0.7428 | N/A | no |
| O82043 | ILV5_PEA | 1, ., 1, ., 1, ., 8, 6 | 0.8004 | 0.9870 | 0.7848 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 462 | |||
| TIGR00465 | 314 | TIGR00465, ilvC, ketol-acid reductoisomerase | 1e-51 | |
| COG0059 | 338 | COG0059, IlvC, Ketol-acid reductoisomerase [Amino | 3e-51 | |
| PRK05479 | 330 | PRK05479, PRK05479, ketol-acid reductoisomerase; P | 9e-41 | |
| pfam07991 | 165 | pfam07991, IlvN, Acetohydroxy acid isomeroreductas | 5e-40 | |
| PRK13403 | 335 | PRK13403, PRK13403, ketol-acid reductoisomerase; P | 7e-29 | |
| PRK05225 | 487 | PRK05225, PRK05225, ketol-acid reductoisomerase; V | 4e-17 | |
| pfam01450 | 146 | pfam01450, IlvC, Acetohydroxy acid isomeroreductas | 3e-13 |
| >gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 1e-51
Identities = 104/335 (31%), Positives = 162/335 (48%), Gaps = 32/335 (9%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ +IG+GSQG AQA NLRDS + V VGLRKG S+ +A GF +G +
Sbjct: 5 TVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTV 53
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DL++ L+ D Q + YE I +K LG SHGF ++ + + PK++
Sbjct: 54 EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFT 289
V+ V PKG G VR Y +G G+ + AV QD G A +AL ++ A+G
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGV 165
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 349
TT ++E SD+FGE+ +L G + ++++ F E G +LAY TV + +I +
Sbjct: 166 LETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELK-LIVDL 224
Query: 350 ISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
I G+ + + S + + + +++ G + L
Sbjct: 225 IYEGGITGMRDRISNTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWAL------ 278
Query: 410 EKE-GLPAF-PMGKID-QTRMWKVGERVRSTRPAG 441
E E G PAF K + + + KVG+ +R+ PAG
Sbjct: 279 ENEAGKPAFNTARKYESEHEIEKVGKELRAMVPAG 313
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway [Amino acid biosynthesis, Pyruvate family]. Length = 314 |
| >gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 3e-51
Identities = 106/345 (30%), Positives = 169/345 (48%), Gaps = 55/345 (15%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG AQA NLRDS V +GLRKGS S+ +A+ GF + +
Sbjct: 20 KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGF-----KVYTV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKN 229
E +D+V++L+ D Q + YEK I +K + LG +HGF G + PK+
Sbjct: 69 EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGLIVP-----PKD 123
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289
+ VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G T
Sbjct: 124 VDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQDASGKALDIALAYAKGIGG--T 176
Query: 290 FA----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGI 345
A TT ++E +D+FGE+ +L G + ++++ F E G +LAY EC+ +
Sbjct: 177 RAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYF---ECLHEL 233
Query: 346 --ISKIISTQGMLAVYNSFSGEDKKEF------EKAYSASYYPCMEILYECYEDVAAGSE 397
I +I G+ + S S + E+ + A M+ + +D+ +G
Sbjct: 234 KLIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMK---KVLKDIQSGEF 288
Query: 398 IRSVVL---AGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
+ +L AGR E + + + KVG+ +R P
Sbjct: 289 AKEWILENQAGRPKLEAL------REETAEHEIEKVGKELRKMMP 327
|
Length = 338 |
| >gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (375), Expect = 9e-41
Identities = 83/236 (35%), Positives = 129/236 (54%), Gaps = 31/236 (13%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NLRDS + V VGLR+GS+S+ +A A GF + +
Sbjct: 19 KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGL-DFPKNI 230
E +D++++L+ D QA+ YE+ I +K + L +HGF + H G P ++
Sbjct: 68 AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNI-HF---GQIVPPADV 123
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VI V PKG G VRR Y +G G+ AVHQD G A ++AL ++ +G T
Sbjct: 124 DVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQDASGNAKDLALAYAKGIGG--TR 176
Query: 291 A----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A TT ++E +D+FGE+ +L G + ++++ F E G ++AY EC+
Sbjct: 177 AGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY---FECL 229
|
Length = 330 |
| >gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 5e-40
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A A NLRDS V VGLR GS+S+ +A+ GF + +
Sbjct: 6 KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D+V++L+ D QA+ YEK I +K + L +HGF ++ + PK++
Sbjct: 55 AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQDASGKAKDLALAYAKGIGG 161
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 165 |
| >gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (290), Expect = 7e-29
Identities = 106/330 (32%), Positives = 165/330 (50%), Gaps = 36/330 (10%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ VIG+GSQG AQAQNLRDS E V VG+R G +SF A+A GF + +
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGFE-----VMSVS 66
Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
E + + +V +L+ D QA Y+ ++ ++ +L SHGF + Q ++ P + V
Sbjct: 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTF 290
V PK G VRR++ +G G+ + AVHQD G A +VAL ++ +G
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALAYAKGVGCTRAGVI 178
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISK 348
TT ++E +D+FGE+ +L G V +V++ F TE G ++AY EC+ +I
Sbjct: 179 ETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY---FECLHELKLIVD 235
Query: 349 IISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRF 408
++ G+ + +S S D EF + S E E + EI+ A +
Sbjct: 236 LMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLT---EIQQGEFAKKWI 290
Query: 409 YEKE-GLPAF-PMGKIDQT-RMWKVGERVR 435
E + G P + M K +Q ++ KVGE +R
Sbjct: 291 LENQAGRPTYNAMKKAEQNHQLEKVGEELR 320
|
Length = 335 |
| >gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-17
Identities = 69/206 (33%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
I ++G G+QG Q N+RDS + + LRK + AE RA+ TE +G
Sbjct: 39 IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DLV+ L D +D + MK + LG SHGF ++ +G K+I
Sbjct: 91 YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD--GRATNVALGWSVALGSPFT 289
V+ V PK G VR Y + G G+ + AVH + D G +A W+ A G
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG--H 200
Query: 290 FATTLEQ----EYRSDIFGERGILLG 311
A LE E +SD+ GE+ IL G
Sbjct: 201 RAGVLESSFVAEVKSDLMGEQTILCG 226
|
Length = 487 |
| >gnl|CDD|216510 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-13
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
E+E SD+FGE+ +L G + G++++ F E G + ++AY T+ +I +I
Sbjct: 1 FEEETESDLFGEQAVLCGGLQGLIKAGFETLVEAGYSPEIAYFETLH-ELKLIVDLIYEG 59
Query: 354 GMLAVYNSFSGEDKKEF------EKAYSASYYPCMEILYECYEDVAAGSEIRSVVL---A 404
G+ + +S S E+ + + + M+ E +D+ G+ + +L A
Sbjct: 60 GLSGMRDSIS--TTAEYGAYLWGPRIITEATKILMK---EILKDIQNGTFAKEWLLENSA 114
Query: 405 GRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
G KE +I + + KVG+++R P
Sbjct: 115 GNPRLNKE------RKEIREHPIEKVGKKLRKLMP 143
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 146 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 462 | |||
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 100.0 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 100.0 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 100.0 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 100.0 | |
| PF01450 | 145 | IlvC: Acetohydroxy acid isomeroreductase, catalyti | 100.0 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 100.0 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 100.0 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.97 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.96 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.95 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.95 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.95 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.95 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.94 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.94 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.91 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.91 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.86 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.83 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.78 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.78 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.78 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.76 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.72 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.71 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.71 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.68 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.62 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.62 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.61 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.61 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.58 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 99.58 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.56 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.55 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.46 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.45 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.45 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.44 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.43 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.41 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.39 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.38 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.36 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.36 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.36 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.34 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.31 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.31 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.31 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.28 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.27 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.26 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.25 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.25 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.25 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.25 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.23 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.22 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.21 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.21 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.18 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 99.15 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.12 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 99.11 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.11 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.1 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.05 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.04 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.02 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.01 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.0 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 98.98 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.98 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.98 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.97 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.96 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.96 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.96 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.95 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.92 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.92 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.92 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.91 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.89 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.88 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.88 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.88 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.87 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 98.86 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.86 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.85 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.84 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.84 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.83 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.82 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.81 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.81 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.77 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.75 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.73 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.69 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.68 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.67 | |
| PF14748 | 107 | P5CR_dimer: Pyrroline-5-carboxylate reductase dime | 98.67 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.65 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.64 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.64 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.64 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.63 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.63 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.63 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 98.62 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.62 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.58 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.58 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 98.55 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.55 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.47 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.46 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.42 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.41 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.41 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.39 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.39 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.34 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.33 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.27 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.25 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.24 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.2 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 98.19 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.18 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.17 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.16 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 98.16 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.12 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.1 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.1 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.1 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.08 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.01 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.01 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.93 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.9 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.86 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.83 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.83 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.77 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.77 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.68 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.65 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.65 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.62 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.61 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.58 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.56 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.53 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.49 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.47 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.46 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.46 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.44 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.43 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.43 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.39 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.38 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.36 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.34 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.34 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.32 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.31 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.3 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.3 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.29 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.28 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.27 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.21 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.2 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.2 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.2 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.2 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.18 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.14 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 97.13 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.12 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.11 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.11 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.1 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.09 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.03 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.02 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.0 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.97 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 96.97 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 96.94 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.94 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.93 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.88 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.88 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.85 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.83 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.83 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.82 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.79 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.79 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.79 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.74 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.73 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.68 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.67 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.67 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.67 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.67 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 96.64 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.62 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.62 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.58 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.55 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.54 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.52 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.52 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.37 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.36 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.36 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 96.33 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.3 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.28 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.21 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.16 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.14 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.12 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 96.11 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.09 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.05 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 95.99 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 95.93 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.91 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 95.91 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.9 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.84 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.84 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.78 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.76 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.64 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.63 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 95.61 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.56 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.56 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.54 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.54 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.53 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.53 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.53 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.49 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.39 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.33 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.27 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.25 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.19 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 95.16 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 95.09 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 95.08 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.04 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.02 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 94.98 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.94 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 94.93 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 94.91 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.87 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.85 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 94.83 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 94.8 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.71 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.71 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 94.7 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 94.64 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.56 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 94.55 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.55 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.51 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.46 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 94.43 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.38 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 94.36 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.35 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.34 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.34 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.32 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.29 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 94.26 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.26 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 94.18 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.12 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.08 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 94.07 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.04 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.04 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.01 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 94.0 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 93.99 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.94 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.86 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.83 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 93.81 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 93.79 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.73 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.56 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.55 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 93.54 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.49 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.48 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.47 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 93.46 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 93.42 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 93.42 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 93.41 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 93.4 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 93.3 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 93.26 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.26 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 93.25 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 93.24 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.23 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.22 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.2 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 93.12 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 93.08 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 93.08 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 93.07 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 92.97 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 92.95 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 92.9 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 92.9 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 92.84 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 92.83 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 92.82 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 92.79 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 92.77 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 92.75 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 92.74 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.74 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 92.72 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.65 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 92.64 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 92.51 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 92.47 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 92.46 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.45 | |
| PLN00106 | 323 | malate dehydrogenase | 92.41 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 92.4 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 92.4 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 92.39 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 92.37 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 92.34 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 92.33 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.32 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 92.28 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 92.27 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 92.24 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 92.16 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 92.14 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 92.0 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 91.99 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 91.96 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 91.88 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 91.84 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 91.81 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 91.76 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 91.55 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 91.51 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 91.43 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 91.31 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 91.23 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.21 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 91.16 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.06 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 91.05 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 91.0 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 90.98 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 90.83 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 90.81 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 90.78 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 90.63 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.63 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 90.56 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 90.54 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 90.49 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 90.24 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 90.15 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 90.14 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.1 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.1 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 90.06 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 90.01 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 89.97 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 89.92 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 89.8 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 89.73 | |
| PRK08223 | 287 | hypothetical protein; Validated | 89.52 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 89.51 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 89.51 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 89.49 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 89.19 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 89.11 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 89.0 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 88.94 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 88.92 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 88.9 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 88.85 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 88.65 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 88.51 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 88.47 | |
| PRK07411 | 390 | hypothetical protein; Validated | 88.32 | |
| PLN02477 | 410 | glutamate dehydrogenase | 88.23 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 88.19 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 88.19 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 88.16 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.05 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 87.98 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 87.96 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 87.89 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 87.77 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 87.75 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 87.74 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 87.66 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 87.61 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 87.57 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 87.56 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 87.52 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 87.52 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 87.49 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 87.49 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.47 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.43 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 87.33 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 87.29 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 87.25 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 87.19 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 87.17 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 87.01 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 86.93 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 86.89 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 86.83 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 86.82 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.81 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 86.78 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 86.75 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 86.72 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 86.59 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 86.57 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.53 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 86.34 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 86.32 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 86.23 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 86.23 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 85.99 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 85.83 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 85.71 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 85.71 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 85.7 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 85.68 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 85.21 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 85.2 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 85.13 | |
| PRK05717 | 255 | oxidoreductase; Validated | 85.12 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 85.09 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 85.08 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 84.83 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 84.73 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 84.63 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 84.62 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 84.57 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 84.5 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.29 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 84.18 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 84.16 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 84.11 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.04 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 83.98 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 83.9 | |
| PRK14805 | 302 | ornithine carbamoyltransferase; Provisional | 83.86 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 83.73 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 83.51 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.42 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 83.41 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 83.3 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 83.2 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 83.01 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 83.0 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 82.91 | |
| cd08287 | 345 | FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik | 82.72 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 82.63 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 82.55 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 82.52 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 82.5 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 82.4 |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-84 Score=641.76 Aligned_cols=310 Identities=32% Similarity=0.552 Sum_probs=295.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+.|+| |||+|||||+||+++|+||||| |++|+||+|.++.||++|+++||. +.+++|++++||+|+++
T Consensus 14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence 58999 9999999999999999999999 999999999999999999999999 68999999999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
+||.+|.+||+ +|.|+|++|++|.|+||||+++. .+.||+|++||||+||+||+.||++|++| +|+|++|+
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~---~i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA 153 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFG---LIVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA 153 (338)
T ss_pred CchhhHHHHHHHHhhhhhcCCceEEeccccceecc---eecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence 99999999999 79999999999999999999873 57999999999999999999999999997 89999999
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCc--ccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~~--viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
++||+|++++++|++|++++|++| +++|||++|+++||||||++|||++.++|.++||++|++||+||+||++|+|++
T Consensus 154 V~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~AyfE~lhE~ 233 (338)
T COG0059 154 VHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYFECLHEL 233 (338)
T ss_pred EEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccC---chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc-
Q 012479 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS---YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP- 418 (462)
Q Consensus 343 ~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~---~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~- 418 (462)
+ +|+|||+|+||..|+++|| +||+||+|.+++ ...+|+.|+++|++||||+|+|+|++|++ +|+|.|+
T Consensus 234 k-lIvdLiyegGi~~M~~siS--nTAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~-----~g~p~l~~ 305 (338)
T COG0059 234 K-LIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQ-----AGRPKLEA 305 (338)
T ss_pred H-HHHHHHHHhhHHHHHHhcC--CHHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhh-----cCCHHHHH
Confidence 8 9999999999999999999 588899998775 24579999999999999999999999986 6899988
Q ss_pred ch-hhhcChhHHHhHHHHhcCCCCCC
Q 012479 419 MG-KIDQTRMWKVGERVRSTRPAGDL 443 (462)
Q Consensus 419 ~~-~i~~~~ie~vG~~lR~~~~~~~~ 443 (462)
++ ..++|+||+||++||++|||.+.
T Consensus 306 ~r~~~~~~~iEkvg~~lrk~m~~~~~ 331 (338)
T COG0059 306 LREETAEHEIEKVGKELRKMMPWEKK 331 (338)
T ss_pred HHHHhhcChHHHHHHHHHHhcchhcc
Confidence 44 55899999999999999999874
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-80 Score=640.32 Aligned_cols=332 Identities=27% Similarity=0.441 Sum_probs=309.6
Q ss_pred ccccccchhhhhhhh-----ccccccceeecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEE
Q 012479 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (462)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Viv 145 (462)
.|||||++|++|+++ |++++| |+..+..|+| |+|+|||||+||+++|+|||++ |++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~~r~e---------f~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvv 64 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCRFMDRDE---------FADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISY 64 (487)
T ss_pred CCccccccHHHHHHHhccceecchhh---------ccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEE
Confidence 499999999999998 888888 9888999999 9999999999999999999999 999999
Q ss_pred EecCC-----chhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhh
Q 012479 146 GLRKG-----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (462)
Q Consensus 146 g~r~~-----~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~ 220 (462)
|+|++ ++++++|.++||. +.+.+|++++||+|++++||..+..++++|+|+||+|++|.++|||+|++.
T Consensus 65 glr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~- 138 (487)
T PRK05225 65 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV- 138 (487)
T ss_pred eccccccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC-
Confidence 99986 6799999999997 578999999999999999999999999999999999999999999999764
Q ss_pred hccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec--cCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 012479 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (462)
Q Consensus 221 ~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~--qd~tgea~e~a~al~~aiG~~~--viettf~~ 296 (462)
++.||+|++||+|+||+||+.||++|++| +|+|++|+|+ ||++++++++|++|+.++|+++ +++|||++
T Consensus 139 --~i~~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~ 211 (487)
T PRK05225 139 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 211 (487)
T ss_pred --ceeCCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHH
Confidence 57999999999999999999999999997 8999999999 8999999999999999999995 99999999
Q ss_pred hccccchhhhHhHHhHH-----------------------------------------H---------------------
Q 012479 297 EYRSDIFGERGILLGAV-----------------------------------------H--------------------- 314 (462)
Q Consensus 297 E~~~dlfgeqtvL~G~~-----------------------------------------p--------------------- 314 (462)
|+++||||||++|||++ .
T Consensus 212 E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E~I~e~i~e~GI~~m~d~~S~tak~ga~~~~~~~ 291 (487)
T PRK05225 212 EVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKIRAFELSEQL 291 (487)
T ss_pred HHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHHHHHHHHHhccHHHHHHhccchhhcccccccHHH
Confidence 99999999999999999 4
Q ss_pred ----------------------------------------------------------------------HHHHHH----
Q 012479 315 ----------------------------------------------------------------------GIVESL---- 320 (462)
Q Consensus 315 ----------------------------------------------------------------------aliea~---- 320 (462)
++++++
T Consensus 292 k~~m~p~f~~~~~~I~sG~fak~~m~d~~~~~~~l~~~r~~~~~~~~E~~~~~~~~~~~~~~~erG~Lm~a~~~~g~e~~ 371 (487)
T PRK05225 292 KEIMAPLFQKHMDDIISGEFSSTMMADWANDDKKLLTWREETGKTAFENAPQYEGKISEQEYFDKGVLMVAMVKAGVELA 371 (487)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhcCChHHHHHHHHhhcCchhhcccccccchhHHHHhhhhHHHHHHHhhhHHH
Confidence 566676
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHHHHHHHHHhccCChhhhH
Q 012479 321 FRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRS 400 (462)
Q Consensus 321 ~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~~m~e~~~~i~~G~far~ 400 (462)
||++|++||+||.||++++|+++ ||++||+|+|+.+|+++|| +|||||+|+++. .+.+.|+++|++||+|+|+|+
T Consensus 372 FEtLveaGy~PE~AYfE~lhElk-LIvdLi~e~Gl~~M~~~iS--dTAeyG~y~~g~--~vi~~mk~~l~~Iq~G~fak~ 446 (487)
T PRK05225 372 FETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLFSH--AAVPLLKDFMATLQPGDLGKG 446 (487)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhh--hHhhcCCcccCh--HHHHHHHHHHHHcCCCHHHhh
Confidence 99999999999999999999996 9999999999999999999 689999987653 244699999999999999999
Q ss_pred HHHhcccccccCCCCccc-c-hhhhcChhHHHhHHHHhcCCCCC
Q 012479 401 VVLAGRRFYEKEGLPAFP-M-GKIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~-~-~~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
| .+|+ .|.|.|+ + +++++|+||+||++||++|+||+
T Consensus 447 ~-~e~~-----~g~~~l~~~~~~~~~h~iE~vG~~LR~~m~~m~ 484 (487)
T PRK05225 447 L-PSNA-----VDNAQLRDVNEAIRNHPIEQVGKKLRGYMTDMK 484 (487)
T ss_pred H-Hhcc-----CCcHHHHHHHHHHhcCcHHHHHHHHHHHhHhhh
Confidence 9 7776 5788887 3 47799999999999999999998
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-78 Score=610.50 Aligned_cols=310 Identities=31% Similarity=0.513 Sum_probs=290.3
Q ss_pred cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 104 ~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
..+.|+| +||||||+|+||.++|+||+++ |++|++++|+ .++++.+.+.|+. +.+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 3588999 9999999999999999999999 9999998876 6678888888997 458999999999999
Q ss_pred EeecchhHHHHHH-HHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEE
Q 012479 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (462)
Q Consensus 184 Lavpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~al 262 (462)
+++|+..+.+++. +++++|++|++|.|+|||+|++. .+.||+|++||||+||+||+.||++|++| +|+|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999998889986 69999999999999999999773 57999999999999999999999999997 899999
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCc--ccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 012479 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (462)
Q Consensus 263 iav~qd~tgea~e~a~al~~aiG~~~--viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e 340 (462)
|+++||+|+++++++++|+++||+++ +++|||++|+++||||||++|||++.+||+++||++|++||+||+||++|+|
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~h 228 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFECLH 228 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccC---chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCcc
Q 012479 341 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS---YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAF 417 (462)
Q Consensus 341 ~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~---~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~ 417 (462)
+++ ||+|||+|+|+.+|+++|| +|||||+|++++ .+.+|+.|+++|++||+|+|||+|+.||+ +|+|.|
T Consensus 229 e~k-li~dli~e~G~~~m~~~~S--~taeyG~~~~g~~ii~~~~k~~m~~~l~~iq~g~fa~~~~~e~~-----~g~~~~ 300 (335)
T PRK13403 229 ELK-LIVDLMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLTEIQQGEFAKKWILENQ-----AGRPTY 300 (335)
T ss_pred HHH-HHHHHHHHccHHHHHHhhC--cHHhcCCccCCCcccCHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----CCCHHH
Confidence 997 9999999999999999999 688999999875 35689999999999999999999999986 799988
Q ss_pred c-c-hhhhcChhHHHhHHHHhcCCCCC
Q 012479 418 P-M-GKIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 418 ~-~-~~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
+ + +++++|+||+||++||++|||-+
T Consensus 301 ~~~~~~~~~h~ie~vg~~lR~~~~~~~ 327 (335)
T PRK13403 301 NAMKKAEQNHQLEKVGEELREMMSWIH 327 (335)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhCCccc
Confidence 8 3 46689999999999999999954
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-73 Score=574.09 Aligned_cols=310 Identities=32% Similarity=0.538 Sum_probs=291.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
...|+| ++|+|||+|+||+++|++|+++ |++|++++++++++++.+++.|+.. .+.+|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 477899 9999999999999999999999 9999999888888899999999973 589999999999999
Q ss_pred eecchhHHHHH-HHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 185 avpd~a~~~vl-~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
++||..+.+++ ++|+|+|++|++|+++|||++++.+ +.||++++|||+|||+|++.+|+.|+.| +|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999999999 6799999999999999999998865 4888999999999999999999999997 8999999
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCc--ccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~--viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
++++|+++++++++++|++++|+++ +++|||++|+++||||||++|||++.+|++++||++|++||+||+||++|+|+
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e 231 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHE 231 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccC---chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc
Q 012479 342 ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS---YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP 418 (462)
Q Consensus 342 i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~---~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~ 418 (462)
++ ||+|||+|+|+.+|+++|| +|||||+|+++. .+.+|+.|+++|++||+|+|+|+|++||+ +|+|.|+
T Consensus 232 ~k-~i~dl~~~~g~~~m~~~~s--~ta~~g~~~~~~~~~~~~~~~~m~~~~~~i~~g~fa~~~~~~~~-----~~~~~~~ 303 (330)
T PRK05479 232 LK-LIVDLIYEGGIANMRYSIS--NTAEYGDYVSGPRVITEETKKEMKEVLKDIQSGEFAKEWILENK-----AGRPTFK 303 (330)
T ss_pred HH-HHHHHHHHccHHHHHHhcC--cHhhcCccccCCcccCHHHHHHHHHHHHHcCCCHHHHHHHHHhc-----CCcHHHH
Confidence 97 8999999999999999999 688999998875 35799999999999999999999999986 6889988
Q ss_pred -c-hhhhcChhHHHhHHHHhcCCCCC
Q 012479 419 -M-GKIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 419 -~-~~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
+ +++++|+||+||++||++|||.+
T Consensus 304 ~~~~~~~~~~~e~~g~~lr~~~~~~~ 329 (330)
T PRK05479 304 ALRREEAEHPIEKVGAKLRAMMPWIK 329 (330)
T ss_pred HHHHHHhcCcHHHHHHHHHHhccccc
Confidence 4 46689999999999999999965
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-69 Score=545.46 Aligned_cols=307 Identities=33% Similarity=0.535 Sum_probs=281.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
|+| |||+|||+|+||+++|++|+++ |+++++++++++++++.+.+.|+. +.++.+++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~-----~~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCE-----ECCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 988888888777778888888987 3568899999999999999
Q ss_pred chhHHH-HHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 188 d~a~~~-vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
|+.+.. +.++|.++++++.+|+++|||++++++. .+|++++|||+|||+|++.+|++|++| +|+|++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 995554 5557999999999999999999988765 778899999999999999999999997 8999988899
Q ss_pred cCCCHHHHHHHHHHHHHhCCC--cccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG 344 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~--~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~G 344 (462)
+|+++++++++++|++++|.+ ++++|+|++|+++|+|++||+||||+|+++.+++|++|++|||||+||++++||++|
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g 220 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKL 220 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999 499999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhcHHHHHHhcCCcchhhhchhhccC--chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc-c-h
Q 012479 345 IISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP-M-G 420 (462)
Q Consensus 345 li~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~--~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~-~-~ 420 (462)
+++|++++|+..|+|+|| +|||||+|..+. .+.+|+.|+++|++||||+|+|+|+.+++ .|.|.|+ + +
T Consensus 221 -~~~l~~e~g~~~l~~~Vs--staeyg~~~~~~~~~~~~~~~~~~~~~~i~~g~fa~~~~~~~~-----~~~~~~~~~~~ 292 (314)
T TIGR00465 221 -IVDLIYEGGITGMRDRIS--NTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWALENE-----AGKPAFNTARK 292 (314)
T ss_pred -HHHHHHHhcHHHHHHHcC--CHHHcCcchhHHHhhHHHHHHHHHHHHHhCCChhhhhhhhhcc-----CCcHHHHHHHH
Confidence 999999999999999999 688999997664 25589999999999999999999999875 6889888 3 4
Q ss_pred hhhcChhHHHhHHHHhcCCCCC
Q 012479 421 KIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 421 ~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
++++|+||+||++||++|||++
T Consensus 293 ~~~~~~~e~vg~~lr~~~~~~~ 314 (314)
T TIGR00465 293 YESEHEIEKVGKELRAMVPAGK 314 (314)
T ss_pred HHhCCcHHHHHHHHHHhccCCC
Confidence 6799999999999999999985
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=312.99 Aligned_cols=160 Identities=44% Similarity=0.728 Sum_probs=137.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
|+| |+|+|||||+||+++|+||||| |++|+|++|+++++|++|+++||. +.+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 688 9999999999999999999999 999999999999999999999999 5799999999999999999
Q ss_pred chhHHHHHH-HHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 188 d~a~~~vl~-eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
|..|.++|+ +|.|+|++|++|.|+|||++++ ..+.+|++++|+|++||+||+.+|++|++| +|+|++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~---~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHY---GLIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHC---TTS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhc---CcccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 7999999999999999999976 347899999999999999999999999997 7999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCC
Q 012479 267 QDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~ 287 (462)
||+|+++++++++|+++||++
T Consensus 142 qD~sg~A~~~ala~A~~iG~~ 162 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGT 162 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHH
T ss_pred ECCCchHHHHHHHHHHHhCCc
Confidence 999999999999999999975
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=288.66 Aligned_cols=141 Identities=28% Similarity=0.461 Sum_probs=127.3
Q ss_pred hhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchh
Q 012479 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (462)
Q Consensus 294 f~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~ 373 (462)
|++|+++||||||++|||+++++|+++||++|++||+||.||++++|++. +|+++|+++|+..|+++|| +||+||+|
T Consensus 1 F~~E~~sDLfGEq~vL~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e~~-lI~dli~~~Gi~~M~~~iS--~TAeyG~~ 77 (145)
T PF01450_consen 1 FKEETESDLFGEQAVLCGGVHALVEAGFETLVEAGYSPEIAYFECLHETK-LIVDLIYEGGIYGMYDSIS--DTAEYGAY 77 (145)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTT--HHHHHHHTHHHHH-HHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred ChHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHccHHHHHHhcC--CHHHhHHH
Confidence 68999999999999999999999999999999999999999999999964 9999999999999999999 68899999
Q ss_pred hccC--chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc--chhhhcChhHHHhHHHHhcCCCCC
Q 012479 374 YSAS--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MGKIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 374 ~~~~--~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~--~~~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
..+. +.++|+.|+++|++|++|+|+|+|+.+++ .|.+.++ ++++++|+||+||++||++|||+|
T Consensus 78 ~~~~r~~~~~k~~m~~~l~~I~~G~fak~~i~e~~-----~g~~~l~~~~~~~~~~~~e~VG~~lR~~~~~~k 145 (145)
T PF01450_consen 78 TWGPRIIEAVKPLMKEILEDIQSGEFAKEWIEENQ-----AGDPRLNAMREKIRNHPIEKVGEKLRAMMPWMK 145 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH-----TTSHHHHHHHHHHSTSHHHHHHHHHHHTHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhc-----CCCHHHHHHHHhhcCCcchhHHHHHHHhccccC
Confidence 8664 36789999999999999999999999976 4667666 358899999999999999999985
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A. |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=280.44 Aligned_cols=218 Identities=19% Similarity=0.274 Sum_probs=195.9
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCC----cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++||+|||+|+||.+++.+|.++ | .+|++..|..++..+.+.++|+.. ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 47999999999999999999999 7 378888887666556888888873 567889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCc-EEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 187 SDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
||+...+++.++.+ ..+++ +|++++|+++..++. .+| +.+|+|+|||+|..+ |+|++. ++.
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v------------g~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV------------GAGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH------------cCccee-eec
Confidence 99999999999999 66776 478999999998887 667 899999999999988 589999 677
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
..++++++++.+.++++.+|.. .+.++++|+..|+++||+|+ ++|++.|++|+.|+|+++|++++.|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~v--------~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGKV--------VEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQT 204 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCCe--------EEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999975 44556789999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 342 ITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 342 i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
+.| .++|+.|+|. ..|+|+||.+
T Consensus 205 ~~G-aakll~e~~~~p~~Lr~~VtSP 229 (266)
T COG0345 205 VAG-AAKLLLESGEHPAELRDQVTSP 229 (266)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhCcCC
Confidence 999 9999999999 7999999964
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=271.44 Aligned_cols=219 Identities=18% Similarity=0.277 Sum_probs=187.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHHHH-HcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+||+|||+|+||.+++++|.++ |+ +|++.+|+ .++.+.+. +.|+.. +.++.|++++||+|||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~-~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLN-VSNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCC-HHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999988 64 56665554 34444444 478754 567888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
||+...++++++.++++++++ |++++|+++..+++ .++...+|+|+|||+|... |+|++. ++.
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v------------g~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV------------GEGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH------------cCceEE-EEe
Confidence 999999999999999998875 67999999988876 5555668999999999888 589999 567
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
.++++.++++.+..+|+.+|.. .+..++.|+..|+|+||+|+ ++|++.|++++.|+|+++|.+++.|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~--------~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t 207 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQT--------EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQA 207 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999964 23345578899999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcc
Q 012479 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (462)
Q Consensus 342 i~Gli~~li~e~G~--~~m~~~vs~~~ 366 (462)
+.| .++|+.++|. ..++|+|+.+.
T Consensus 208 ~~G-~a~ll~~~~~~p~~l~~~V~sPG 233 (272)
T PRK12491 208 VLG-SAKMVLETGIHPGELKDMVCSPG 233 (272)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhCCCCc
Confidence 999 8999999988 89999999653
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=249.94 Aligned_cols=219 Identities=15% Similarity=0.196 Sum_probs=182.1
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCC----cEEEEEecCCchhHHH-HHHcC-ceecCCCcCCHhhhhccCCeEEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAG-FTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s~~~-A~~~G-~~~~d~~~~~~~eav~~ADvViL 184 (462)
|++|+|||+|+||.+++.+|+++ | .+|+++.++.....+. ....+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 57899999999999999999988 6 4677666654332222 22232 222 3577888999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCc-EEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 185 LISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
++||+...++++++.+++++++ +|+++.|+++..+++ .+|. .+|||+|||+|... |+|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~------------g~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV------------GVGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH------------hhhcEE-E
Confidence 9999999999999999998886 577999999888876 4453 58999999999888 589998 5
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTEN-GMNEDLAYKNT 338 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~-G~~~e~A~~~~ 338 (462)
+...+++.++++.+..+|+.+|... +..+++|+..|+|+||+|+ +++++.|++++. |+++++|++++
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~~--------~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~ 205 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHVM--------TIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFL 205 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCEE--------EEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6688899999999999999999652 2234577888999999998 789999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 339 VECITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 339 ~e~i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
.|++.| .++|+.++|. ..++|+|+++
T Consensus 206 ~~~~~G-~a~l~~~~~~~p~~l~~~v~sp 233 (277)
T PRK06928 206 NFALAG-TGKLLVEEDYTFSGTIERVATK 233 (277)
T ss_pred HHHHHH-HHHHHHccCCCHHHHHHhCCCC
Confidence 999999 8999999886 9999999965
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=241.79 Aligned_cols=213 Identities=18% Similarity=0.260 Sum_probs=177.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
+||+|||+|+||.+++++|+++ +. ++++.+++ .+. .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~-~~~------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPS-KKN------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCC-hhc------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 35554443 211 24432 4577888899999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeecc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q 267 (462)
|+...++++++.++++++.+|++++|+++..++. .++....++++|||.|... |+|++. +++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~------------g~g~t~-i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV------------GQGSLV-FCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh------------cceeEE-EEeCC
Confidence 9999999999999988777889999999877765 4455557999999999655 357766 67788
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012479 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (462)
Q Consensus 268 d~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i~ 343 (462)
+++.+..+.+..+|+.+|.. .+.+++.|+..++++||+|+ +++++.|++++.|+++++|++++.|++.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~--------~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGII--------QEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcE--------EEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88999999999999999965 22334467888999999998 8999999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHHhcCCcc
Q 012479 344 GIISKIISTQGM--LAVYNSFSGED 366 (462)
Q Consensus 344 Gli~~li~e~G~--~~m~~~vs~~~ 366 (462)
| .++|+.++|. ..|+|+|+.+.
T Consensus 203 G-~a~ll~~~~~~~~~l~~~v~spg 226 (260)
T PTZ00431 203 G-SVHMVKASDQPVQQLKDDVCSPG 226 (260)
T ss_pred H-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 9 8999999986 89999999653
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=229.38 Aligned_cols=219 Identities=13% Similarity=0.175 Sum_probs=180.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC----cEEEEEecCCchh-HHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+||+|||+|+||.+++++|.++ | .++++.+|..++. ...+.+.|+.. ..++.+++++||+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 7999999999999999999988 6 4677777654433 33344567754 567888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
||+.+.++++++.+.++++++|+ +++|+++..+.+ .++.+.+|+++|||.|... +.|++. ++.
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~------------~~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI------------LKSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH------------hcccEE-Eee
Confidence 99999999999999998888765 569998877765 4455678999999998777 368886 566
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
..+.+.++++.++.+|..+|.. +.. . +++|+..++++|++|+ +++++.|.+++.|+++++|+....++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~--~~v---~---e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~ 209 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLV--SVV---E---EEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQT 209 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcE--EEe---C---HHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7788899999999999999964 211 2 2357788899999997 88999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 342 ITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 342 i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
+.| .++++.+++. ..+++.++++
T Consensus 210 ~~g-sa~~~~~~~~~~~~l~~~v~sp 234 (279)
T PRK07679 210 MIG-AAEMLKASEKHPSILRKEITSP 234 (279)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhcCCC
Confidence 998 7899987665 8899999643
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=223.56 Aligned_cols=220 Identities=15% Similarity=0.187 Sum_probs=177.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC---cE-EEEEecCCc-hhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IV-VKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G---~~-Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+||+|||+|+||.+++.+|.+. + .+ +++..|++. +..+.+...|+.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999877 5 23 555555443 3334444567653 467888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
||+.+.++++++.++++...+|+.++|+++..++. .++.+..++++|||.+... |+|++.+ +..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v------------~~g~~~~-~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI------------GKSISLY-TMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH------------hcCCeEE-eeC
Confidence 99999999999998887444577999999888766 5566668999999998765 4789995 456
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
.+.++++.+.+..+|+.+|.... ..| +.++..++++||+|+ +++++.|.+++.|+++++|++++.+++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~-----~~e---~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQL-----CTE---EEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEE-----ECH---HHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77899999999999999997521 122 345667899999997 899999999999999999999999999
Q ss_pred HHHHHHHHHHhc-HHHHHHhcCCcc
Q 012479 343 TGIISKIISTQG-MLAVYNSFSGED 366 (462)
Q Consensus 343 ~Gli~~li~e~G-~~~m~~~vs~~~ 366 (462)
.| .++++.+++ ...++|+|+.+.
T Consensus 211 ~g-~~~~~~~~~~~~~l~~~v~spg 234 (245)
T PRK07634 211 SG-SASMLEQTQDPANLREQVTTPG 234 (245)
T ss_pred HH-HHHHHhCCCCHHHHHHhCCCCC
Confidence 99 899998743 389999999643
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=228.88 Aligned_cols=219 Identities=20% Similarity=0.258 Sum_probs=193.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHH-HHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~-A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|||||.|+|..++++++..+ |+ +++.... ..++... .+..|... +.++.+.++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 5799999999999999999988 76 4444443 4455555 78889875 567789999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
+|+.+..++.++.+.+..+++ ++.+.|+.+..+++ .++...+|||+|||+|... |+|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v------------~eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV------------GEGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh------------hcCcEE-Eee
Confidence 999999999999988778876 57999999887776 5566778999999999887 589996 888
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
..+++.++.+++..++..+|.. +|.++++++..|.|+|++|+ .+|++.|.+|+.|+||++||++++|+
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqt 205 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQT 205 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 9999999999999999999976 78888999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcc
Q 012479 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (462)
Q Consensus 342 i~Gli~~li~e~G~--~~m~~~vs~~~ 366 (462)
+.| .++|+.++|. ..|+|.||.|.
T Consensus 206 llG-AakMVl~s~qHP~~Lkd~V~SPg 231 (267)
T KOG3124|consen 206 LLG-AAKMVLASGQHPAQLKDDVCSPG 231 (267)
T ss_pred HHh-HHHHHHhccCCcHHHhCCCCCCC
Confidence 999 9999999998 99999999664
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-26 Score=221.69 Aligned_cols=218 Identities=16% Similarity=0.219 Sum_probs=179.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
+||+|||+|+||.+++++|+++ |+ +++++++++....+.+.+.|+.. ..++.++++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 5899999999999999999998 76 77777344444456667788864 5678889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
|+...++++++.+.++++++ |++++|+++..+.. ..+.. +++++|||.|... |.+++. ++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~------------~~~~~~-l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV------------GEAASV-MSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH------------hCceEE-EEeC
Confidence 99999999999999988885 56889998766654 33333 7999999999876 356766 5567
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
.+.+.+.++.++.+++.+|. ++.. .| +.|+..++++|++|+ +++++.|++++.|+++++|+....+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~--~~~~---~e---~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK--IWVV---DE---KLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEEe---CH---HHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77889999999999999995 2222 23 467777889999997 789999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 343 TGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
.| +++|+.++|. ..|+++|+.+
T Consensus 206 ~g-s~~l~~~~~~~~~~l~~~v~sp 229 (266)
T PLN02688 206 LG-AAKMVLETGKHPGQLKDMVTSP 229 (266)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCCCC
Confidence 98 8999988887 8899999964
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=217.25 Aligned_cols=219 Identities=16% Similarity=0.217 Sum_probs=177.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCC---cEEEEEecCCchhHHHHHH-cCceecCCCcCCHhhhhccCCeEEEee
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G---~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
|++|+|||+|+||.+++..|.++ | .+|.+..|+.+ ..+...+ .|+.. ..+..++++++|+||+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~-~~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPE-KRAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHH-HHHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 47999999999999999999988 7 46766666543 3444444 47653 467788899999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
||..+.++++++.+++ +..+|++++|+++..++. .++.+.+++++|||.|... |.|++. +++.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~------------~~~~~~-i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV------------GAGMTA-LTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH------------cCceEE-EecC
Confidence 9999999999999887 344678999998766654 4455678999999998654 357765 6667
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
.+.+.++++.+..+++.+|....+. .++.|+..++++|++|+ +++++.+.+++.|+|+++|.+++.+++
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~~~~~~-------~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~ 206 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGKVVWVD-------DEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTV 206 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCeEEEEC-------ChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8889999999999999999642221 12367788999999996 889999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 343 TGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
.| .++++.+.|. ..++++|+.+
T Consensus 207 ~g-~~~~~~~~~~~~~~l~~~v~tp 230 (267)
T PRK11880 207 LG-AAKLLLESGEHPAELRDNVTSP 230 (267)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCCCC
Confidence 99 8999998877 8899999953
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=218.13 Aligned_cols=218 Identities=15% Similarity=0.195 Sum_probs=174.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|+|||+|+||.+++.+|.++ |+ +|.+..|+..+....+.+. |+.. ..++.++++++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 73 5666666543333333333 5653 467888899999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
||+...++++++.++++++++| ++++|+++..++. .++ ..++++|||+|... +.|.+. ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~------------~~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA------------LSGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH------------hhccEE-Eee
Confidence 9999999999999999888864 5777788777665 333 36999999988554 257876 445
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHH-cCCCHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTE-NGMNEDLAYKNTVE 340 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~-~G~~~e~A~~~~~e 340 (462)
....+.+.++.+..++..+|.. .+..+++++..+.++|++|+ +++++.+.+++ .|+++++|+.++.+
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~ 204 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASE 204 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6667888999999999999964 23334567777999999998 77999999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHHhcCCcc
Q 012479 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (462)
Q Consensus 341 ~i~Gli~~li~e~G~--~~m~~~vs~~~ 366 (462)
++.| .++|+.+++. ..|+|+|+.+.
T Consensus 205 ~~~G-~~~l~~~~~~~~~~l~~~v~spg 231 (273)
T PRK07680 205 MLIG-MGKLLEKGLYTLPTLQEKVCVKG 231 (273)
T ss_pred HHHH-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 9999 7899998876 89999999643
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=205.43 Aligned_cols=195 Identities=18% Similarity=0.268 Sum_probs=165.5
Q ss_pred EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchHHHhh
Q 012479 142 VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQ 220 (462)
Q Consensus 142 ~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~ 220 (462)
+|+++.|+.++..+.+.+.|+.. ..++.++++++|+|||++||+.+.++++++.+.+.++++ |++++|+++..++
T Consensus 11 ~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~ 86 (245)
T TIGR00112 11 DIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLS 86 (245)
T ss_pred eEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHH
Confidence 67888776555455556678764 567888999999999999999999999999988877664 6799999998887
Q ss_pred hccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 012479 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (462)
Q Consensus 221 ~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~ 300 (462)
. .++.+.+++|+|||+|... |+|++. ++...+++.++.+.+..+|..+|.. + +..+
T Consensus 87 ~---~~~~~~~ivR~mPn~~~~~------------~~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~--~------~v~E 142 (245)
T TIGR00112 87 Q---LLGGTRRVVRVMPNTPAKV------------GAGVTA-IAANANVSEEDRALVLALFKAVGEV--V------ELPE 142 (245)
T ss_pred H---HcCCCCeEEEECCChHHHH------------hCCeEE-EecCCCCCHHHHHHHHHHHHhCCCE--E------EECH
Confidence 6 5566678999999999877 479999 6668889999999999999999965 1 2234
Q ss_pred cchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 301 DIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 301 dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
+.|+..++|+||+|+ +++++.|++++.|+++++|.+++.|++.| .++|+.++|. ..++++|+.+
T Consensus 143 ~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G-~a~l~~~~~~~~~~l~~~v~sp 212 (245)
T TIGR00112 143 ALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVKG-AAKLLEESGEHPALLKDQVTSP 212 (245)
T ss_pred HHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHcCCCC
Confidence 577888999999998 89999999999999999999999999999 8999998876 9999999964
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-23 Score=200.07 Aligned_cols=215 Identities=16% Similarity=0.187 Sum_probs=163.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc---EEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
+||+|||+|+||.+++++|++. |+ .+.+..|+.++..+.+... |+.. +.++.++++++|+||+++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999988 64 3455555444433344444 3543 5688889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
|+...++++++. +++|++ |++++|+++..++. .++....++++|||.|... ++|++.+ +..
T Consensus 71 p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~------------~~g~t~~-~~~ 132 (258)
T PRK06476 71 PQIAEEVLRALR--FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE------------RKGVTAI-YPP 132 (258)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh------------CCCCeEe-cCC
Confidence 999999998873 567775 67889999887765 4455578999999988775 3678874 322
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGII 346 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli 346 (462)
.+.++.+++.+|.... +.+|...|+|+..+...+..-.+++++.+.+++.|+|+++|++...+++.| .
T Consensus 133 -------~~~~~~l~~~lG~~~~----~~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G-~ 200 (258)
T PRK06476 133 -------DPFVAALFDALGTAVE----CDSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFAS-L 200 (258)
T ss_pred -------HHHHHHHHHhcCCcEE----ECChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-H
Confidence 2578999999997522 224666677766554333333599999999999999999999999999999 8
Q ss_pred HHH-HHHhcH--HHHHHhcCCcc
Q 012479 347 SKI-ISTQGM--LAVYNSFSGED 366 (462)
Q Consensus 347 ~~l-i~e~G~--~~m~~~vs~~~ 366 (462)
++| +.+++. ..|+|+|+.+.
T Consensus 201 ~~l~~~~~~~~~~~l~~~v~spg 223 (258)
T PRK06476 201 AQDAVRSTKTDFSALSREFSTKG 223 (258)
T ss_pred HHHHHhcCCCCHHHHHHhCCCCC
Confidence 888 577766 89999999653
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=191.59 Aligned_cols=219 Identities=15% Similarity=0.095 Sum_probs=157.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
++|+|||+|+||+++|++|++. |+++.+..+... .....+...|+. +....+.++++++||+||+|+|+..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCC--cccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 887666554432 223333334444 2234567889999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCC
Q 012479 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (462)
Q Consensus 191 ~~~vl~eI~~-~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~ 269 (462)
..++++++.+ .++++.+|+++++++....+.....++...+||..||+ +|... ..+..+...++.|.++++++.++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPM-aG~e~-sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPM-AGSHK-SGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCc-CcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence 9999999998 48999999999999753222111123556789999995 23321 112222222334788889999999
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 012479 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 349 (462)
Q Consensus 270 tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~l 349 (462)
+.++++.++.+++.+|+. ++..+.++ .+..+++.+.+|.++-..+ +...|.+++.++.++.+.+.+ ++++
T Consensus 151 ~~~~~~~v~~l~~~lGa~-~v~~~~~~------HD~~~A~vshlPh~ia~al--~~~~~~~~~~~~~la~~gfrd-~tRi 220 (359)
T PRK06545 151 DPDAVAELKDLLSGTGAK-FVVLDAEE------HDRAVALVSHLPHILASSL--AARLAGEHPLALRLAAGGFRD-ITRI 220 (359)
T ss_pred CHHHHHHHHHHHHHcCCE-EEECCHHH------HhHHHhHhccHHHHHHHHH--HHhhccCchHHHhhhcccccC-Cccc
Confidence 999999999999999974 33343333 3466888999999766544 566688889999988888876 5655
Q ss_pred H
Q 012479 350 I 350 (462)
Q Consensus 350 i 350 (462)
.
T Consensus 221 a 221 (359)
T PRK06545 221 A 221 (359)
T ss_pred c
Confidence 5
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-19 Score=176.41 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=155.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEE-EEEecCCchhHHHHHHcCceecCCCcCCH-hhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~V-ivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~eav~~ADvViLavpd~ 189 (462)
++|+|||+|+||+++|+.|+.. |+.+ +++.+.+..+.+.+.+.|+.. +...+. .+++.+||+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d--~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVID--ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCccc--ccccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 9876 556666666778888888873 322333 67888999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCch-hhHHhhhcCccccCCCceEEEeeccC
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP-SVRRLYVQGKEINGAGINSSFAVHQD 268 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~-~vr~lf~~G~~~~G~Gv~aliav~qd 268 (462)
+..++++++.|++++|++|+|..+++-..++.-....|++++||..||+. |+ ....+|+ +..+++|+.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~-G~~~~~~lf~--------~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMF-GPEADAGLFE--------NAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCC-CCcccccccC--------CCEEEEcCCCC
Confidence 99999999999999999999999996432222122556656999999984 43 3444554 68999999998
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCC
Q 012479 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGM 329 (462)
Q Consensus 269 ~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~ 329 (462)
.+.+.++.++++|+++|+ +++.++.++|++.- +.+++.-+.+..++...+-+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~ga-~~v~~~~eeHD~~~-----a~vshLpH~~a~al~~~~~~~~~ 201 (279)
T COG0287 147 TEKEWVEEVKRLWEALGA-RLVEMDAEEHDRVM-----AAVSHLPHAAALALANALAKLET 201 (279)
T ss_pred CCHHHHHHHHHHHHHcCC-EEEEcChHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCc
Confidence 889999999999999995 78889999998542 44566666777788777777666
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=174.20 Aligned_cols=249 Identities=16% Similarity=0.116 Sum_probs=173.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|||+||| +|+||.++|+.|++. |++|++..++.+...+.+.+.|+.. ..+..++++++|+||+++|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999998 8888877766544456677778753 4577889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCC-CchhhHHhhhcCccccCCCceEEEeec
Q 012479 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Png-pg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
..++++++.++++++++|+++++++ +..+.+ .+|++++||+.||+. |... .| .|..+++++.
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPmaGp~~~---~~--------~g~~~il~p~ 136 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPMFGPRTP---SL--------KGQVVILTPT 136 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCCCCCCCc---cc--------CCCEEEEecC
Confidence 9999999999999999999988764 233333 456678999999973 4322 33 3567778888
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH-HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG- 344 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL-~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~G- 344 (462)
.+.+.++.+.+.+++..+|+ +++.++.++|++. .+. ++.-+.+.-++..++.+.|++++.+..++.-...-
T Consensus 137 ~~~~~~~~~~v~~ll~~~G~-~v~~~~~e~HD~~------~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~~frd~ 209 (437)
T PRK08655 137 EKRSNPWFDKVKNFLEKEGA-RVIVTSPEEHDRI------MSVVQGLTHFAYISIASTLKRLGVDIKESRKFASPIYELM 209 (437)
T ss_pred CCCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcChhhHHH
Confidence 87888999999999999996 4666666666532 333 44444566777788888899998887654432221
Q ss_pred --HHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHHHHHHHHHhccCChhh
Q 012479 345 --IISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI 398 (462)
Q Consensus 345 --li~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~~m~e~~~~i~~G~fa 398 (462)
+++++. ++-..|+..+.-.++ |-. ...+...+.+.++-+.|++|++-
T Consensus 210 ~~~~tRIa--~~~p~lw~dI~~~N~--~~~---~~l~~~~~~l~~l~~~l~~~D~~ 258 (437)
T PRK08655 210 IDIIGRIL--GQNPYLYASIQMNNP--QIP---EIHETFIKECEELSELVKNGDRE 258 (437)
T ss_pred HHHHHHHh--cCCHHHHHHHHHhCH--HHH---HHHHHHHHHHHHHHHHHHcCCHH
Confidence 011111 222556665542232 110 11133444666666667666543
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=166.35 Aligned_cols=191 Identities=16% Similarity=0.136 Sum_probs=138.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
+||+|||+|+||+++|+.|++. |++|+++++ +....+.+.+.|... . ..+..+++++||+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~-~~~~~~~a~~~g~~~--~-~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSR-RESTCERAIERGLVD--E-ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEEC-CHHHHHHHHHCCCcc--c-ccCCHhHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999998 888766554 455677787788652 1 22333578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCH
Q 012479 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tg 271 (462)
.++++++.++++++.+|+++++++....+. ..+....||+.||+.... ...+..+..++..|.++++++.++.+.
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~---~~~~~~~~v~~HPm~G~~--~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEA---WEKLHPRFVGSHPMAGTA--ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHH---HHHhhCCceeeCCcCCCC--cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 999999999999999999999997544432 111112599999963211 011222222334578999999999999
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHH-HHHHHH
Q 012479 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVE-SLFRRF 324 (462)
Q Consensus 272 ea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~palie-a~~d~~ 324 (462)
++++.++.+++.+|. .+++.+.++|+ ....+++.+|.++- ++....
T Consensus 146 ~~~~~v~~l~~~lG~-~~v~~~~~~hD------~~~a~~shlp~~~a~~l~~~~ 192 (279)
T PRK07417 146 NALAIVEELAVSLGS-KIYTADPEEHD------RAVALISHLPVMVSAALIQTC 192 (279)
T ss_pred HHHHHHHHHHHHcCC-EEEEcCHHHHH------HHHHHHcchHHHHHHHHHHHH
Confidence 999999999999996 45555544444 44667788887655 333333
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=163.68 Aligned_cols=194 Identities=17% Similarity=0.143 Sum_probs=137.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
+||+|||+|+||.++|++|++. |+ +|++ ++.+....+.+.+.|+... ..+..++. ++|+||+++|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~-~d~~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYG-YDHNELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEE-EcCCHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999988 75 5544 4444555677778887521 34666765 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCC------CchhhHHhhhcCccccCCCceEEE
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Png------pg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
.+.++++++.+ ++++++|++++..+....+. +.--...+||+.||+. |.....++|+ |.++++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~--~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~--------g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIES--VPKHIRKNFIAAHPMAGTENSGPKAAIKGLYE--------GKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHH--HHHhcCCCEEecCCcCcCchhhHHhccHHHhC--------CCeEEE
Confidence 99999999999 99999999877764322211 0000125799999984 4455445554 677878
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLA 334 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A 334 (462)
++.++.+.++++.++.+++.+|. ++++++.++|++.- +.+++.-+.+..++.+.+. .+.+++..
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~-----a~vs~lph~~a~~l~~~~~-~~~~~~~~ 202 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHA-----AYISHLPHIISFALANTVL-KEEDERNI 202 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHH-----HHHhHHHHHHHHHHHHHHH-hcCChHHH
Confidence 88888888999999999999996 56667666655321 2235554556666666664 45655543
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-17 Score=163.39 Aligned_cols=186 Identities=18% Similarity=0.220 Sum_probs=139.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
++|+|||+|+||.++|+.|++. |+ +|++.++ +....+.+++.|+.. ....+.+++++++|+||+++|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr-~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADR-SAETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEEC-CHHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7999999999999999999988 75 6665555 445567777788641 12456778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCC------CchhhHHhhhcCccccCCCceEEE
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Png------pg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
...++++++.++++++.+|+++++++....+......+.+++||..||.. |+....++|. |.++++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~--------g~~~~l 149 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFE--------NRWCIL 149 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHC--------CCeEEE
Confidence 99999999999999999999998876433221111345677899999974 2333345554 678888
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~ 321 (462)
++....+.++++.++.++..+|.. ++..+.++| +.++++++.+|.++-.++
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~lG~~-~~~~~~~~h------D~~~A~~s~lph~~a~~l 200 (307)
T PRK07502 150 TPPEGTDPAAVARLTAFWRALGAR-VEEMDPEHH------DLVLAITSHLPHLIAYTI 200 (307)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-EEEcCHHHH------hHHHHHHhhHHHHHHHHH
Confidence 888888889999999999999974 444443344 366888999998765554
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-16 Score=159.49 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=128.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeec
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLIS 187 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav-~~ADvViLavp 187 (462)
++ ++|+|||+|+||+++|+.|++. |.+|++.++.. ..+.+.+.|+.. ..+.++++ .++|+||+|+|
T Consensus 35 ~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp 101 (304)
T PLN02256 35 RK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTS 101 (304)
T ss_pred CC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecC
Confidence 44 7999999999999999999988 88877666553 246677778764 46777776 47999999999
Q ss_pred chhHHHHHHHH-HhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 188 DAAQADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 188 d~a~~~vl~eI-~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+....++++++ .++++++++|+++++++ +..+.. .+|.+.+||++|||.+...-...| ++.+.++
T Consensus 102 ~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~~~~~~--------~~~~~~~ 170 (304)
T PLN02256 102 ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPESGKGGW--------AGLPFVY 170 (304)
T ss_pred HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCCCcccc--------CCCeEEE
Confidence 99999999998 68899999999888864 334433 456678899999997444321222 3566666
Q ss_pred eec----cCCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 012479 264 AVH----QDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (462)
Q Consensus 264 av~----qd~tgea~e~a~al~~aiG~~~viettf~~E~~~ 300 (462)
++. .+.++++++.++.+++.+|+ ++++++.++|++.
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~l~~~lGa-~v~~~~~eeHD~~ 210 (304)
T PLN02256 171 DKVRIGDEGEREARCERFLDIFEEEGC-RMVEMSCEEHDRY 210 (304)
T ss_pred ecceecCCCCCHHHHHHHHHHHHHCCC-EEEEeCHHHHhHH
Confidence 543 45677899999999999996 7888999999855
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-16 Score=174.15 Aligned_cols=221 Identities=16% Similarity=0.163 Sum_probs=159.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
+||+|||+|+||.++++.|+.. |+ +|++.+++ ....+.+.+.|+.. ....+..++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRR-AKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECC-hhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 73 66555544 44567777788751 12456788899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCC-CccEEecccCC-C-----chhhHHhhhcCccccCCCc
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPK-NIGVIAVCPKG-M-----GPSVRRLYVQGKEINGAGI 259 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~-~v~VV~v~Png-p-----g~~vr~lf~~G~~~~G~Gv 259 (462)
...++++++.++++++.+|+++++++ +..+++ .++. .++++..||+. + ......+|. |.
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~--------~~ 143 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGELPAGFVPGHPIAGSEKSGVHAANADLFR--------NH 143 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccccCCeEEecCCcCcCCcchhhhhhhHHhC--------CC
Confidence 99999999999999999999999986 444433 2322 34555566642 1 112234454 56
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-HHHHHHHHHHHcCCCHHHHHHHH
Q 012479 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNT 338 (462)
Q Consensus 260 ~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-liea~~d~~v~~G~~~e~A~~~~ 338 (462)
++++++..+.+.++.+.++.+++.+|.. ++..+ + +.++..++++|++|+ +.-++.+.+.+.|... .+++++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~-~~~~~---~---~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~-~~~~~a 215 (735)
T PRK14806 144 KVILTPLAETDPAALARVDRLWRAVGAD-VLHMD---V---AHHDEVLAATSHLPHLLAFSLVDQLANREDNL-DIFRYA 215 (735)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHcCCE-EEEcC---H---HHHhHHHHHhcchHHHHHHHHHHHHhhcCChh-HHHhhh
Confidence 7778888889999999999999999963 33332 2 245577899999998 7778888888877644 678888
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhc
Q 012479 339 VECITGIISKIISTQGMLAVYNSF 362 (462)
Q Consensus 339 ~e~i~Gli~~li~e~G~~~m~~~v 362 (462)
.+.+.+ ++++. .+.-...+|.+
T Consensus 216 ~~~f~~-~tRia-~~~p~~~~di~ 237 (735)
T PRK14806 216 AGGFRD-FTRIA-ASDPVMWHDIF 237 (735)
T ss_pred ccchhc-ccccc-cCCHHHHHHHH
Confidence 888876 56665 33333344444
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=156.12 Aligned_cols=192 Identities=19% Similarity=0.190 Sum_probs=130.2
Q ss_pred HHHHHHHhhhhhcCC--cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCC
Q 012479 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (462)
Q Consensus 126 iA~~Lrds~~~~g~G--~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk 203 (462)
+|+.|+++ | ++ +++.+.+....+.|++.|+.. .. .+..++++++|+||||+|+....++++++.|+++
T Consensus 1 ~A~aL~~~------g~~~~-v~g~d~~~~~~~~a~~~g~~~--~~-~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVE-VYGYDRDPETLEAALELGIID--EA-STDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSE-EEEE-SSHHHHHHHHHTTSSS--EE-ESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeE-EEEEeCCHHHHHHHHHCCCee--ec-cCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 58889988 7 45 457777788899999999974 22 2336789999999999999999999999999999
Q ss_pred CCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHH
Q 012479 204 PNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (462)
Q Consensus 204 ~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~a 283 (462)
+|++|+|+++++....+.-.-.+|.+++||.+||+. |+. ++.|......++.|.++++|+..+.+.++++.++++++.
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~-G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMA-GPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESC-STS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCC-CCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 999999999996322211112456789999999972 331 123333334445689999999999888999999999999
Q ss_pred hCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHH
Q 012479 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 335 (462)
Q Consensus 284 iG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~ 335 (462)
+|+ +++.++.++|++.- +.+++.-+.+.-++...+.+.+.+.+...
T Consensus 149 ~Ga-~~~~~~~eeHD~~~-----A~vshlpH~~a~al~~~~~~~~~~~~~~~ 194 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDRIM-----AYVSHLPHLLASALANTLAELSSDDPDIL 194 (258)
T ss_dssp CT--EEEE--HHHHHHHH-----HHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 997 68888999998653 33444444556666665654444443333
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=156.92 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=117.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+||+|||+ |+||+++|+.|++. .+++|+ +.++. |....+.++++++||+||||+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~-g~D~~---------------d~~~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVI-GHDPA---------------DPGSLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEE-EEcCC---------------ccccCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 166664 55432 1113467788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeecc
Q 012479 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 191 ~~~vl~eI~~~---Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q 267 (462)
..++++++.++ +++|++|+|+++++-.-.+. ..+...+||+.||+. |+....+| +|.++++|+..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HPMa-G~E~s~lf--------~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHPMT-APPKSPTL--------KGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCCCC-CCCCCccc--------CCCeEEEeCCC
Confidence 99999999876 89999999999997433222 123356799999974 44322344 47899888764
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 012479 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (462)
Q Consensus 268 d~tgea~e~a~al~~aiG~~~viettf~~E~~~ 300 (462)
..+..+.++.|++.+|+ ++++++.++|++.
T Consensus 132 --~~~~~~~v~~l~~~~Ga-~v~~~~aeeHD~~ 161 (370)
T PRK08818 132 --LQHWSPWVQSLCSALQA-ECVYATPEHHDRV 161 (370)
T ss_pred --chhHHHHHHHHHHHcCC-EEEEcCHHHHHHH
Confidence 34557889999999996 6888999999855
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-14 Score=144.67 Aligned_cols=252 Identities=12% Similarity=0.139 Sum_probs=158.6
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHHhhhhhcCCcEEEEEecCCch----hHHHHHHcCceecCC
Q 012479 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENG 167 (462)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lrds~~~~g~G~~Vivg~r~~~~----s~~~A~~~G~~~~d~ 167 (462)
+||.|-|.||| |.++|.+|.+. |++|++++++..+ .++...+.|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~--- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV--- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE---
Confidence 47777777776 88999999998 9998888775431 345566778764
Q ss_pred CcCCHhhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccchHHH----hhhccccCCCCccEEecccCCCch
Q 012479 168 TLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLGH----LQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 168 ~~~~~~eav~~ADvViLavpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~~i~~----~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
..+..+++++||+||+++|+.. ..+++++|.+++++|++|++++.+.... +.. .++.....++++|+.|+.
T Consensus 72 -asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~ 147 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAA 147 (342)
T ss_pred -eCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCcc
Confidence 5688899999999999999988 6789999999999999988877664322 222 222222233343333332
Q ss_pred hhHHhhhcCccccCCCceEEE-----eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH--
Q 012479 243 SVRRLYVQGKEINGAGINSSF-----AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-- 315 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~ali-----av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-- 315 (462)
.... . +.|... + +.....+.++++.+..+++++|.. ++... + +.......+...+.+
T Consensus 148 v~Ga--e------~g~l~V-m~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-v~~~~---~---g~~~~vk~~~n~l~av~ 211 (342)
T PRK12557 148 VPGT--P------QHGHYV-IAGKTTNGTELATEEQIEKCVELAESIGKE-PYVVP---A---DVVSAVADMGSLVTAVA 211 (342)
T ss_pred cccc--c------cchheE-EeCCCcccccCCCHHHHHHHHHHHHHcCCE-EEEeC---H---HHHHHHHHHHHHHHHHH
Confidence 2100 0 012222 2 223345788999999999999963 33332 1 123231222222222
Q ss_pred ---HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCc-------hhHHHH
Q 012479 316 ---IVESLFRRFTENG-MNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY-------YPCMEI 384 (462)
Q Consensus 316 ---liea~~d~~v~~G-~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~-------~~~~~~ 384 (462)
+.|+ +-.+.+.| .|++++.+.+.|++.| +++|+.++|++.|-+.+.. .+--+.+-+-.. +...++
T Consensus 212 ~a~~aE~-~~l~~~~~~~p~~~~~~~~~~~~~~-~a~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (342)
T PRK12557 212 LSGVLDY-YSVGTKIIKAPKEMIEKQILMTLQT-MASLVETSGVDGLLKALNP--ELLLRSASSMHLLEKQKDLDAALEI 287 (342)
T ss_pred HHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHH-HHHHHHHhChHHHHHhcCH--HHHhhhHhhCCcchhhhhHHHHHHH
Confidence 2222 22333444 5566677799999998 9999999999999998873 222232222111 225678
Q ss_pred HHHHHHhccCCh
Q 012479 385 LYECYEDVAAGS 396 (462)
Q Consensus 385 m~e~~~~i~~G~ 396 (462)
++++++++..+.
T Consensus 288 ~~~~~~~~~~~~ 299 (342)
T PRK12557 288 LENLDEDLLKEI 299 (342)
T ss_pred HHHHHHHHhhcc
Confidence 888888864433
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-14 Score=147.21 Aligned_cols=178 Identities=10% Similarity=0.028 Sum_probs=128.9
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 110 gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
.+++|+||| +|+||+++|+.|++. |+.|.++++.. ..+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 348999999 999999999999999 99887776531 12456788899999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
....++++++.+ +++|++|+++++++. ..+.. ..+ .+||..||+..... ..| .|..+++
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~---~~~--~~fvg~HPm~G~~~--~~~--------~~~~vv~-- 214 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLA---AHS--GPVLGLHPMFGPDV--GSL--------AKQVVVV-- 214 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHH---hCC--CCEEeeCCCCCCCC--ccc--------CCCEEEE--
Confidence 999999999999 999999999998743 22222 222 26999999754322 122 3444444
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-HHHHHHHHHHHcCCCHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-liea~~d~~v~~G~~~e~A~~ 336 (462)
....+.++++.++.+++.+|+ +++.++.++|++.- +.++ .+|. +.-++...+.+.|.+.+....
T Consensus 215 ~~~~~~~~~~~~~~l~~~lG~-~v~~~~~~~HD~~~-----a~vs-hLpH~~a~al~~~l~~~~~~~~~~~~ 279 (374)
T PRK11199 215 CDGRQPEAYQWLLEQIQVWGA-RLHRISAVEHDQNM-----AFIQ-ALRHFATFAYGLHLAKENVDLEQLLA 279 (374)
T ss_pred cCCCCchHHHHHHHHHHHCCC-EEEECCHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 334466788999999999996 68888888887542 2334 3354 445556666667888766543
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-14 Score=158.17 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=133.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-~ADvViLa 185 (462)
.+++ +||+|||+|+||+++|++|++. |++|+++++.. .. +.+.+.|+.. ..+.++++. ++|+||+|
T Consensus 366 ~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~~-~~a~~~Gv~~----~~~~~el~~~~aDvVILa 432 (667)
T PLN02712 366 DGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-YS-DEAQKLGVSY----FSDADDLCEEHPEVILLC 432 (667)
T ss_pred CCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-HH-HHHHHcCCeE----eCCHHHHHhcCCCEEEEC
Confidence 4566 8999999999999999999998 88887666653 22 5566778763 567788775 59999999
Q ss_pred ecchhHHHHHHHHHh-cCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceE
Q 012479 186 ISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (462)
Q Consensus 186 vpd~a~~~vl~eI~~-~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~a 261 (462)
+|+....++++++.+ .+++|++|+++++.+ +..+.. .+|.+++||+.||+.....-+..|.. ...+.+|...
T Consensus 433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~~v 508 (667)
T PLN02712 433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKVRI 508 (667)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCcEe
Confidence 999999999998876 689999999997763 334333 45678899999998644331111221 1111223211
Q ss_pred EEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCC
Q 012479 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (462)
Q Consensus 262 liav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~ 330 (462)
.......+..+..+.+|..+|+ ++++++.++|++. .+.+-.+|.+ +...+++.|++
T Consensus 509 ---~~~~~~~~~~~~l~~l~~~lGa-~vv~ms~eeHD~~------~A~vShLpHl---la~~L~~~~~~ 564 (667)
T PLN02712 509 ---GSDDRRVSRCDSFLDIFAREGC-RMVEMSCAEHDWH------AAGSQFITHT---MGRLLEKLGLE 564 (667)
T ss_pred ---CCCcchHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH------HHHHHHHHHH---HHHHHHHCCCc
Confidence 1222234556677899999996 7888999998833 2233344443 34777778875
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-14 Score=140.67 Aligned_cols=217 Identities=12% Similarity=0.130 Sum_probs=142.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----cCceecC----------CCcCCHhhh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----~G~~~~d----------~~~~~~~ea 175 (462)
+++|+|||+|+||.++|..|..+ |++|++.++. .+..+.+.+ .|....+ ....+..++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVM-EGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 58999999999999999999998 9888776654 333433332 1210000 013567788
Q ss_pred hccCCeEEEeecchh--HHHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCc
Q 012479 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (462)
Q Consensus 176 v~~ADvViLavpd~a--~~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~ 252 (462)
+++||+||+++|++. ..+++.++.+.++++++| +.++|+.+..+.+ .++...+|+++||+.|... +
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~-------~- 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV-------I- 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc-------C-
Confidence 999999999999875 457888998888888876 6888888766654 3444567999999999765 1
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHH
Q 012479 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (462)
Q Consensus 253 ~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e 332 (462)
. ... +++....+.+.++.+..++..+|...++ . +.+..-| ++...+.+++......+.+.|++++
T Consensus 146 ----~-l~~-i~~g~~t~~~~~~~v~~l~~~~G~~~v~-~----~~d~~G~----i~nr~~~~~~~Ea~~l~~~g~~~~~ 210 (311)
T PRK06130 146 ----P-LVE-VVRGDKTSPQTVATTMALLRSIGKRPVL-V----KKDIPGF----IANRIQHALAREAISLLEKGVASAE 210 (311)
T ss_pred ----c-eEE-EeCCCCCCHHHHHHHHHHHHHcCCEEEE-E----cCCCCCc----HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 2 233 5567778999999999999999974211 1 1111111 2222333444434444456678998
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhcHHHHHHh
Q 012479 333 LAYKNTVECI------TGIISKIISTQGMLAVYNS 361 (462)
Q Consensus 333 ~A~~~~~e~i------~Gli~~li~e~G~~~m~~~ 361 (462)
+......+.. .| .-+++-..|+..+.+.
T Consensus 211 ~id~~~~~~~g~~~~~~G-p~~~~D~~Gl~~~~~~ 244 (311)
T PRK06130 211 DIDEVVKWSLGIRLALTG-PLEQRDMNGLDVHLAV 244 (311)
T ss_pred HHHHHHHhcCCCCccCCC-HHHHhhhhccchHHHH
Confidence 8877543321 24 3455666676544433
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-13 Score=135.94 Aligned_cols=226 Identities=13% Similarity=0.136 Sum_probs=167.4
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHHhhhhhcCCcEEEEEecCCc----hhHHHHHHcCceecCC
Q 012479 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENG 167 (462)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lrds~~~~g~G~~Vivg~r~~~----~s~~~A~~~G~~~~d~ 167 (462)
|||.|-|.||| |.++|.+|.++ |++|++++++.+ ..++...+.|...
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~--- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV--- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee---
Confidence 57778888877 88999999999 999999877533 2345677788875
Q ss_pred CcCCHhhhhccCCeEEEeecchhHH-HHHHHHHhcCCCCcEEEEeccchH---HHhhhcccc-CCCCccEEecccC-CCc
Q 012479 168 TLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLD-FPKNIGVIAVCPK-GMG 241 (462)
Q Consensus 168 ~~~~~~eav~~ADvViLavpd~a~~-~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~-~p~~v~VV~v~Pn-gpg 241 (462)
+.+..|+++++|+||+++|+..+. +++..+.+++++|++|++++-+.. .+.-+..+. =++|+.|...||- -|+
T Consensus 72 -AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred -cCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 678999999999999999988875 788889999999999998876542 222111122 2579999999996 455
Q ss_pred hhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC-cccccchhhhccccchhhhHhHHhHHHH----H
Q 012479 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHG----I 316 (462)
Q Consensus 242 ~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~-~viettf~~E~~~dlfgeqtvL~G~~pa----l 316 (462)
+.-.+.|.-+ |... + -..-+++++.+....+.+.+|.. +++ ..|+.+..+-+|-.+.+ -
T Consensus 151 ~~~~~~~~~~------~~~~-~-~~~~A~ee~i~~~~el~~~~~~~~~~~--------pa~l~~~v~Dm~s~vta~~~~g 214 (341)
T TIGR01724 151 TPQHGHYVIG------GKPT-A-GKEMATEEQISKCVELAKSTGKKAYVV--------PADVTSAVADMGSLVTAVALAG 214 (341)
T ss_pred CCCCceeeec------cccc-c-ccccCCHHHHHHHHHHHHHhCCCeeec--------chhhcchhhhHHHHHHHHHHHH
Confidence 5544556653 3332 2 24567999999999999999975 222 23455555555555444 3
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCC
Q 012479 317 VESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364 (462)
Q Consensus 317 iea~~d~~v~-~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~ 364 (462)
+-.-++.+++ .|-|.+++-..+.+++.. ++.|+.++|+..|-+.+..
T Consensus 215 il~y~~~~t~i~~ap~~~~~~~~~~~l~~-~a~l~~~~Gi~~~~~~l~p 262 (341)
T TIGR01724 215 VLDYYYVGTQIINAPKEMIEKQILMTLQT-MASLVETSGVEGMAKAINP 262 (341)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcCH
Confidence 4455666654 699999999999999985 9999999999999998873
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-15 Score=156.47 Aligned_cols=104 Identities=11% Similarity=0.084 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHH----HHHHHHHhcc
Q 012479 318 ESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME----ILYECYEDVA 393 (462)
Q Consensus 318 ea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~----~m~e~~~~i~ 393 (462)
+++||.+|++|++|++||+++.+++. +|+++|+++||..|+|++|+ +++||.|... +.+|+ +++++|++|+
T Consensus 233 ~~~Fe~lve~G~~pe~A~k~~~~~~E-~I~e~i~e~GI~~m~d~~S~--tak~ga~~~~--~~~k~~m~p~f~~~~~~I~ 307 (487)
T PRK05225 233 LLCFDKLVAEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLSN--PAKIRAFELS--EQLKEIMAPLFQKHMDDII 307 (487)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhhHH-HHHHHHHhccHHHHHHhccc--hhhccccccc--HHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999998 69999999999999999996 6669988642 33444 4599999999
Q ss_pred CChhhhHHHHhcccccccCCCCccc-ch-hhhcChhHHHh
Q 012479 394 AGSEIRSVVLAGRRFYEKEGLPAFP-MG-KIDQTRMWKVG 431 (462)
Q Consensus 394 ~G~far~~~~~~~~~~~~~g~~~~~-~~-~i~~~~ie~vG 431 (462)
||+|+|+|+.++. +|.+.+. |+ ++.+|++|++-
T Consensus 308 sG~fak~~m~d~~-----~~~~~l~~~r~~~~~~~~E~~~ 342 (487)
T PRK05225 308 SGEFSSTMMADWA-----NDDKKLLTWREETGKTAFENAP 342 (487)
T ss_pred ccHHHHHHHHHHh-----cCChHHHHHHHHhhcCchhhcc
Confidence 9999999999975 5666665 54 66899999975
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.6e-14 Score=154.58 Aligned_cols=165 Identities=17% Similarity=0.176 Sum_probs=122.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav-~~ADvViLavpd~a 190 (462)
++|+|||+|+||+++|++|++. |++|++..+.. ..+.+.+.|+.. ..+.++++ +++|+||+|||+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~--~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSD--HSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH--HHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 7899999999999999999998 88887666652 235677788764 56777755 57999999999999
Q ss_pred HHHHHHHHH-hcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhh-HHhhhcCccccCCCceEEEee
Q 012479 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSV-RRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 191 ~~~vl~eI~-~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~v-r~lf~~G~~~~G~Gv~aliav 265 (462)
..++++++. +++++|++|+++.+++.. .+.. .+|++.+||+.||+. |+.. +..| .|.+++++.
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~~~~g~--------~~~~~~~~~ 188 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQSAKHGW--------DGLRFVYEK 188 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCccccchh--------ccCcEEEee
Confidence 999999886 789999999999988632 2232 456778999999984 3331 1222 345555552
Q ss_pred ----ccCCCHHHHHHHHHHHHHhCCCcccccchhhhcccc
Q 012479 266 ----HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (462)
Q Consensus 266 ----~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~d 301 (462)
......+..+..+.+|..+|+ ++++++.++|++.-
T Consensus 189 ~~~~~~~~~~~~~~~l~~l~~~lGa-~v~~ms~eeHD~~~ 227 (667)
T PLN02712 189 VRIGNEELRVSRCKSFLEVFEREGC-KMVEMSCTEHDKYA 227 (667)
T ss_pred ccCCCccccHHHHHHHHHHHHHcCC-EEEEeCHHHHHHHH
Confidence 222223456777899999996 78888988888543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=134.07 Aligned_cols=152 Identities=17% Similarity=0.181 Sum_probs=115.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHH-----------HHHHcCceec--------C-CCcC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEE--------N-GTLG 170 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~--------d-~~~~ 170 (462)
|+||+|||.|.||.++|..|..+ |++|++.+++.+ ..+ ...+.|.... . ....
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~ 75 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDA-AVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT 75 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 47899999999999999999999 988877665433 232 3333442100 0 0023
Q ss_pred CHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHh
Q 012479 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~l 247 (462)
+. +.+++||+||+++|++.. .+++++|.++++++++| +.++|+.+..+.. .++..-+++++||+.|.+..
T Consensus 76 ~~-~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~--- 148 (282)
T PRK05808 76 DL-DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM--- 148 (282)
T ss_pred CH-HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC---
Confidence 44 457999999999998766 67999999999999987 7889998877655 33344579999999998882
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.++. ++++...+.+..+.+..++..+|..
T Consensus 149 ---------~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~ 177 (282)
T PRK05808 149 ---------KLVE--IIRGLATSDATHEAVEALAKKIGKT 177 (282)
T ss_pred ---------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 3564 6678899999999999999999975
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-12 Score=137.12 Aligned_cols=192 Identities=14% Similarity=0.076 Sum_probs=131.5
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH------------------HcC-ceecCCCcCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~------------------~~G-~~~~d~~~~~ 171 (462)
++||+|||+|+||.++|.+|..+ |++|+++++..++...... ..| +.. +.+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe----eCC
Confidence 47999999999999999999999 9999888776443221110 012 332 467
Q ss_pred HhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
+++++++||+|+.++|+... ..++.++.++++++.+| +-++|+.+..+.+ .++..-.++..||+.|.+.
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~----- 145 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYL----- 145 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCccc-----
Confidence 88999999999999998864 34778888888888765 4667877766654 3334457999999998765
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH-HHHHHHHHHHHHc
Q 012479 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-GIVESLFRRFTEN 327 (462)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p-aliea~~d~~v~~ 327 (462)
+--..++.....+.+.++.+..++..+|...++ -+...+-| +++.+. +++.-.+....+.
T Consensus 146 ---------~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~-----~~k~~~gf-----i~nrl~~a~~~EA~~L~~~g 206 (495)
T PRK07531 146 ---------LPLVELVGGGKTSPETIRRAKEILREIGMKPVH-----IAKEIDAF-----VGDRLLEALWREALWLVKDG 206 (495)
T ss_pred ---------CceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEe-----ecCCCcch-----hHHHHHHHHHHHHHHHHHcC
Confidence 122246667778899999999999999975221 11122222 333333 3333334444567
Q ss_pred CCCHHHHHHHHH
Q 012479 328 GMNEDLAYKNTV 339 (462)
Q Consensus 328 G~~~e~A~~~~~ 339 (462)
|+++++.....-
T Consensus 207 ~~s~~~id~~~~ 218 (495)
T PRK07531 207 IATTEEIDDVIR 218 (495)
T ss_pred CCCHHHHHHHHh
Confidence 799998877443
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=5e-13 Score=122.98 Aligned_cols=149 Identities=22% Similarity=0.217 Sum_probs=100.6
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|+||||||+|+||.++|++|.++ |++|.+++|.. +..+...+.|... +.++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~-~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSP-EKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSH-HHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccch-hhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 68999999999999999999999 99998877664 4456666678876 7899999999999999999855
Q ss_pred H-HHHHHH--HHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 191 Q-ADNYEK--IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 191 ~-~~vl~e--I~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
+ .+++.+ +.+++++|+++++++-.... .+.+ ..-+.++.+|- +|-.-+.. .-+ .|--.++.
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vd-apV~Gg~~---~a~-------~g~l~~~~ 136 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE--RLAAKGVRYVD-APVSGGPP---GAE-------EGTLTIMV 136 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH--HHHHTTEEEEE-EEEESHHH---HHH-------HTTEEEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh--hhhhccceeee-eeeecccc---ccc-------ccceEEEc
Confidence 5 678887 99999999999988876432 2222 11134566653 22211111 111 24433333
Q ss_pred eccCCCHHHHHHHHHHHHHhCC
Q 012479 265 VHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~ 286 (462)
.. +.++.+.++.+++.+|.
T Consensus 137 -gG--~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 137 -GG--DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp -ES---HHHHHHHHHHHHHHEE
T ss_pred -cC--CHHHHHHHHHHHHHHhC
Confidence 32 56899999999999996
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-12 Score=128.65 Aligned_cols=192 Identities=21% Similarity=0.202 Sum_probs=127.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
+||+|||+|+||.++|.||.+. |+.+.+++|..++..+.+++.|... ..++.|+++++|+||+++|+..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998777788888889886 67889999999999999998888
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeccchHHH---hhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 192 ~-~vl~---eI~~~Lk~gaiL~~a~G~~i~~---~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
. +|+. .+.+.+++|+++++++-+.... +.+ .+. ..+..++- +|=.-+.. ..+ .|.-.+.+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~-~~~-~~G~~~lD-APVsGg~~---~A~-------~GtLtimv 137 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAA-ALA-AKGLEFLD-APVSGGVP---GAA-------AGTLTIMV 137 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHH-HHH-hcCCcEEe-cCccCCch---hhh-------hCceEEEe
Confidence 6 5773 5999999999999998764321 111 011 12333332 23111111 011 35555333
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH-H-HHHHHHHH---HHHcCCCHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-G-IVESLFRR---FTENGMNEDLAYK 336 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p-a-liea~~d~---~v~~G~~~e~A~~ 336 (462)
.. +.++.+.++-+++.+|.. ++.. -..=.+..+=||+-+- + .+.++.|+ +.++|++++..+.
T Consensus 138 -GG--~~~~f~r~~pvl~~~g~~-i~~~------G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~ 204 (286)
T COG2084 138 -GG--DAEAFERAKPVLEAMGKN-IVHV------GPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLE 204 (286)
T ss_pred -CC--CHHHHHHHHHHHHHhcCc-eEEE------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 44 689999999999999973 2211 1111122221222111 1 33344443 4588999987665
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=129.48 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=112.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceec-------C-CCcCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N-GTLGD 171 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------d-~~~~~ 171 (462)
++||+|||+|.||.++|.+|..+ |++|++.+++.++ .+. ..+.|.... + -...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 48999999999999999999999 9988877665332 222 222231100 0 00233
Q ss_pred HhhhhccCCeEEEeec--chhHHHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 172 IYETISGSDLVLLLIS--DAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 172 ~~eav~~ADvViLavp--d~a~~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
..+++++||+||.++| ++....++.++.++++++++| +.++|+.+..+.+ ......+++++||..|....
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~~---- 149 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPIM---- 149 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCcccC----
Confidence 4467899999999999 555567888999999999987 5889998877655 33344689999998887651
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.. ..++.+...+.+.++.+..++..+|..
T Consensus 150 ---------~l-veiv~g~~t~~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 150 ---------KL-VEIIRGADTSDEVFDATKALAERFGKT 178 (295)
T ss_pred ---------ce-EEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 12 346677888999999999999999975
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.6e-13 Score=111.65 Aligned_cols=90 Identities=23% Similarity=0.335 Sum_probs=73.1
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCC---cEEEEE-ecCCchhHHHHHHcCceecCCCcC-CHhhhhccCCeEEEeec
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G---~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~-~~~eav~~ADvViLavp 187 (462)
||+|||+|+||.+++++|.++ | .+|.+. .|+.++..+.+++.+... .. +..|++++||+|||++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999999 8 788866 666666667778888654 34 79999999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE-EEecc
Q 012479 188 DAAQADNYEKIFSCMKPNSIL-GLSHG 213 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL-~~a~G 213 (462)
|+...++++++ +...++++| ++++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999 777788865 45554
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-12 Score=122.02 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=110.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-------cCceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
|||+||| .|+||.+++..|.++ |++|+++.|..++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 5899997 899999999999998 88888887765443333322 13210 001246678899999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEE-EEeccchH-----------------HHhhhccccCCCCccEEecccCCCchhhH
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-----------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~i-----------------~~~~~~~i~~p~~v~VV~v~Pngpg~~vr 245 (462)
+++|++.+.++++++.+.++. ++| ..+.|+.+ ..+++ .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999999999998887764 654 46667754 22333 455546899999999877654
Q ss_pred HhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHh-CCC
Q 012479 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSP 287 (462)
Q Consensus 246 ~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~ai-G~~ 287 (462)
.. .. +.+...++| . | ++++++.+.+|...+ |+.
T Consensus 150 ~~-~~-----~~~~~~~v~-G-d-d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 150 DV-DD-----EVDCDVLVC-G-D-DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred CC-CC-----CCCCCEEEE-C-C-CHHHHHHHHHHHHhcCCCC
Confidence 31 11 245555444 3 3 456999999999999 974
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=123.62 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=101.6
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC--------------ceecCCCcCCHhhhh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G--------------~~~~d~~~~~~~eav 176 (462)
|+||+|||+|+||.++|.+|.++ |++|.++.|... ..+...+.| ... ..+.++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPE-QAAEINADRENPRYLPGIKLPDNLRA----TTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHcCcccccCCCCcCCCCeEE----eCCHHHHH
Confidence 57999999999999999999999 999887776533 344444432 222 45677888
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec-cchHH-------HhhhccccCCC-CccEEecccCCCchhhHHh
Q 012479 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLLG-------HLQSMGLDFPK-NIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 177 ~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~-G~~i~-------~~~~~~i~~p~-~v~VV~v~Pngpg~~vr~l 247 (462)
+++|+||+++|+....++++++.++++++++|+... |+... .+.+ ..+. ....++..|+.+...
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~---- 142 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV---- 142 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----
Confidence 999999999999988899999999999998766444 77531 2222 2222 123455667654333
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCC
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~ 286 (462)
+.|.+.++... ..+.+..+.+..+++..|.
T Consensus 143 --------~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 143 --------ARGLPTAVVIA-STDEELAERVQELFHSPYF 172 (325)
T ss_pred --------HcCCCcEEEEE-eCCHHHHHHHHHHhCCCCE
Confidence 12333322222 2356788888999998885
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=121.39 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=122.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc---CCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~---ADvViLavpd 188 (462)
++|+|||+|+||.++|++|.+. |++|++++|+.+ ..+.+.+.|... ..+.++++++ +|+||+++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQE-AVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4899999999999999999998 999888776543 445556678764 5688888876 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 189 ~-a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
. ...++++++.+.+++|++|++++.... ..+.+ . .-..++.++- +|-.-+.. .=+ .|. .++
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~vd-apV~G~~~---~a~-------~g~-~~~- 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE-E-LAERGIHYVD-CGTSGGVW---GLR-------NGY-CLM- 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH-H-HHHcCCeEEe-CCCCCCHH---HHh-------cCC-eEE-
Confidence 8 667889999999999999998876532 22221 1 1124566643 34221111 001 455 333
Q ss_pred eccCCCHHHHHHHHHHHHHhCCC--cccccch-hhhccccchhhhHhHHhHHHHHHHHHHHHHHHcC--CCHHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSP--FTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTENG--MNEDLAYKN 337 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~--~viettf-~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G--~~~e~A~~~ 337 (462)
+.. ++++.+.++.+++.+|.. .++..-. -.-....+. -+.++.+.+.++.|++ ..+.+.| ++++..+..
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~-~n~~~~~~~~~~aEa~-~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV-HNGIEYGMMQAYAEGL-ELLDKSDFDFDVEDVARL 208 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcccCCCHHHHHHH
Confidence 344 577899999999999961 1221110 000001111 1222233333344443 3456788 889877764
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.3e-11 Score=118.74 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=104.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh---hccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea---v~~ADvViLavpd 188 (462)
|+|+|||+|+||.++|++|.+. |++|++++|+.+ ..+...+.|... ..+.+++ ++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQD-AVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999999 999888766544 455566667653 3455554 4568999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
....++++++.+++++|++|++++... .....+ ..-..+++++-....+.....+ .|. + +.+
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~--~~~~~g~~~vda~vsGg~~~a~-----------~G~-~-~~~ 134 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK--LLKEKGIHLLDCGTSGGVWGRE-----------RGY-C-FMI 134 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH--HHHhcCCeEEecCCCCCHHHHh-----------cCC-e-eee
Confidence 988899999999999999988876542 111111 1224567787755444222211 364 4 333
Q ss_pred ccCCCHHHHHHHHHHHHHhCC
Q 012479 266 HQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~ 286 (462)
.. +.++.+.++.+++.+|.
T Consensus 135 gG--~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 135 GG--DGEAFARAEPLFADVAP 153 (298)
T ss_pred CC--CHHHHHHHHHHHHHhcC
Confidence 44 67899999999999996
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-10 Score=115.67 Aligned_cols=213 Identities=16% Similarity=0.188 Sum_probs=137.1
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-------------------------Cceec
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------------GFTEE 165 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-------------------------G~~~~ 165 (462)
++||+|||.|.||.++|..|..+ |++|++.++..+ ..+.+.+. .+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 74 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL- 74 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-
Confidence 48999999999999999999998 999887766533 23333211 2221
Q ss_pred CCCcCCHhhhhccCCeEEEeecch--hHHHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCch
Q 012479 166 NGTLGDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~--a~~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
+.+.++++++||+||.++|.+ ...++++++.+.++++++|+ .++++.+..+.+ ..+..-+|+..||-.|.+
T Consensus 75 ---~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~ 148 (287)
T PRK08293 75 ---TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIW 148 (287)
T ss_pred ---eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCC
Confidence 467888999999999999966 45678899999999999875 445555544443 223334799999977754
Q ss_pred hhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHh-HHHHHHHHHH
Q 012479 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLF 321 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G-~~paliea~~ 321 (462)
. .-.+-+.++...+++.++.+.+++..+|...++-. .+ .-+. +.+ .+.+++...+
T Consensus 149 ~--------------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~---~d-~pgf------i~nRi~~~~~~ea~ 204 (287)
T PRK08293 149 K--------------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLK---KE-QPGY------ILNSLLVPFLSAAL 204 (287)
T ss_pred c--------------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec---CC-CCCH------hHHHHHHHHHHHHH
Confidence 3 23444667888899999999999999996422111 11 1111 222 2223332222
Q ss_pred HHHHHcCC-CHHHHHHH---HHHHHHHHHHHHHHHhcHHHHHHhcC
Q 012479 322 RRFTENGM-NEDLAYKN---TVECITGIISKIISTQGMLAVYNSFS 363 (462)
Q Consensus 322 d~~v~~G~-~~e~A~~~---~~e~i~Gli~~li~e~G~~~m~~~vs 363 (462)
.+++.|+ ++++--.. ....-.| .-+++-..|++.+++...
T Consensus 205 -~l~~~g~a~~~~iD~a~~~~~g~~~G-p~~~~D~~Gld~~~~~~~ 248 (287)
T PRK08293 205 -ALWAKGVADPETIDKTWMIATGAPMG-PFGILDIVGLDTAYNITS 248 (287)
T ss_pred -HHHHcCCCCHHHHHHHHHhccCCCcC-HHHHHHHhchHHHHHHHH
Confidence 3577885 56554432 2221235 356677778766555543
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-11 Score=120.02 Aligned_cols=197 Identities=14% Similarity=0.123 Sum_probs=123.5
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|+||+|||+|+||.++|.+|.+. |++|++++++.+ ..+...+.|... ..+..+++++||+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~-~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQ-AVDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 46899999999999999999998 998887776644 455555667654 5688899999999999999986
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 191 ~-~~vl~---eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+ ..++. .+.+.+++|+++++++-+... .+.+ .....++.++- +|-.-+... =. .|...++
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~ld-apV~g~~~~---a~-------~g~l~~~ 136 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMMD-VPVGRTSDN---AI-------TGTLLLL 136 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEEE-ccCCCCHHH---HH-------hCcEEEE
Confidence 4 55664 477889999998877765432 2211 11123566553 453222210 11 3555544
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccc-hhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viett-f~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~ 337 (462)
+ .. +.+..+.++.+++.+|.. ++... .-.=....+. .-.++++..+++--.+..+.+.|++++..+..
T Consensus 137 ~-gg--~~~~~~~~~p~l~~~g~~-~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~ 205 (296)
T PRK15461 137 A-GG--TAEQVERATPILMAMGNE-LINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKV 205 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHHcCC-eEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 33 678899999999999964 22221 0000111111 11123333333333344567899999887653
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.3e-11 Score=119.76 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=125.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
|||+|||+|+||.+++++|.++ |++|.++++.. + .+...+.|... ..+..|++++||+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 99888877653 2 34455677764 56888999999999999998855
Q ss_pred -HHHHH---HHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 192 -ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 192 -~~vl~---eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
.+++. .+.+.+++|++|++++..... .+.+ ..-..++.|+- +|-.-+.. ..+. |-..+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~-------g~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GARE-------GTLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhc-------CcEEEEE
Confidence 56663 367778999999999877542 2211 12234677777 58543333 2232 4434343
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCcccccc-hhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~~viett-f~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
.. +.+.++.++.+++.+|.. ++... .-.=....+. -+..+...+.++.|++ ..+.+.|++++..+.
T Consensus 136 -gG--~~~~~~~~~p~l~~~g~~-~~~~G~~G~g~~~Kl~-~N~l~~~~~~a~~Ea~-~la~~~Gld~~~~~~ 202 (292)
T PRK15059 136 -GG--DEAVFERVKPLFELLGKN-ITLVGGNGDGQTCKVA-NQIIVALNIEAVSEAL-LFASKAGADPVRVRQ 202 (292)
T ss_pred -cC--CHHHHHHHHHHHHHHcCC-cEEeCCccHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHH
Confidence 33 578899999999999964 22221 0111111111 1222222333455553 235789999998775
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-10 Score=116.03 Aligned_cols=190 Identities=17% Similarity=0.152 Sum_probs=121.7
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHH
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~ 192 (462)
||+|||+|+||.++|.+|.+. |++|++++++. ...+.+.+.|... ..+..+++++||+||+++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGP-EVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999999 99988776654 4466666777754 567889999999999999987554
Q ss_pred -HHH---HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 193 -DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 193 -~vl---~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
.++ +.+.+.+++|++|++++.+... .+.+ ....+++.++- +|-. +... ... .|...++.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~--~l~~~g~~~~~-~pv~-g~~~--~a~-------~g~l~i~~- 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK--AVKEKGIDYLD-APVS-GGEI--GAI-------EGTLSIMV- 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEe-cCCC-CCHH--HHh-------cCCEEEEe-
Confidence 455 3477888999998887766432 2222 11124667776 5742 2111 111 24444343
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH-HhHHHH-HHHHHH---HHHHHcCCCHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHG-IVESLF---RRFTENGMNEDLAYK 336 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL-~G~~pa-liea~~---d~~v~~G~~~e~A~~ 336 (462)
.. +++..+.+..+++.+|.. ++..- .... ++..=| .+.+-+ .++++. ..+.+.|+++++.+.
T Consensus 136 gg--~~~~~~~~~~ll~~lg~~-~~~~g---~~g~---a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~ 202 (291)
T TIGR01505 136 GG--DQAVFDRVKPLFEALGKN-IVLVG---GNGD---GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQ 202 (291)
T ss_pred cC--CHHHHHHHHHHHHHhcCC-eEEeC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 33 478999999999999964 22221 1000 111112 222222 333333 445689999998776
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=118.97 Aligned_cols=152 Identities=17% Similarity=0.239 Sum_probs=111.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH--------------cCceecC---------C
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------------AGFTEEN---------G 167 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~--------------~G~~~~d---------~ 167 (462)
++||+|||+|+||.++|..|.++ |++|++.+++. +..+.+.+ .|....+ .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSE-EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999999 99887766553 33332211 1211000 0
Q ss_pred CcCCHhhhhccCCeEEEeecchh--HHHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhh
Q 012479 168 TLGDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 168 ~~~~~~eav~~ADvViLavpd~a--~~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
...+. +++++||+||+++|++. ..++++++.++++++++| +-++|+.+..+.+ .++..-+++++||..|.+..
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12334 67899999999999886 367888999999999875 4667777766654 33344579999999998872
Q ss_pred HHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.++. +..++..+++..+.+..+++.+|..
T Consensus 152 ------------~~vE--v~~g~~T~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 152 ------------KLIE--VVRAALTSEETFNTTVELSKKIGKI 180 (291)
T ss_pred ------------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2443 3368888999999999999999975
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-11 Score=118.61 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=110.5
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----------cC-------------ceecC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG-------------FTEEN 166 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G-------------~~~~d 166 (462)
++||+|||.|.||.++|..|.++ |++|+++++..+ ..+.+.+ .| +..
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 71 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQE-QLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-- 71 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE--
Confidence 47999999999999999999999 999887766533 3333321 11 121
Q ss_pred CCcCCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchh
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
+.+.++++++||+||.|+|+.... .++.++.++++++++| +.++.+.+..+.+ ......+++.+|+-.|.+.
T Consensus 72 --~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~ 146 (288)
T PRK09260 72 --SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK 146 (288)
T ss_pred --eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc
Confidence 356778999999999999988753 5778899999999977 5666677665544 2223346888898866543
Q ss_pred hHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 244 vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+--..++.+...+.+.++.+..++..+|..
T Consensus 147 --------------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~ 176 (288)
T PRK09260 147 --------------MKLVELIRGLETSDETVQVAKEVAEQMGKE 176 (288)
T ss_pred --------------CceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 233446667788999999999999999964
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-10 Score=114.23 Aligned_cols=193 Identities=13% Similarity=0.126 Sum_probs=123.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceecC---------CCcC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~~ 170 (462)
|++|+|||.|.||.++|.+|.++ |++|+++++..+ ..+. ..+.|..... ..+.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 999888776533 2332 2234532000 1246
Q ss_pred CHhhhhccCCeEEEeecchh--HHHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHHh
Q 012479 171 DIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a--~~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~l 247 (462)
+..+++++||+|+.++|+.. ...++.++.+..+++.+|. -+++..+..+.+ .++..-.++..||..|.+..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 78889999999999999874 3567778877766665543 233444444443 33444579999998876541
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHH-HHHHHHHHHHHHH
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV-HGIVESLFRRFTE 326 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~-paliea~~d~~v~ 326 (462)
.. ..++++...+.+.++.++.++..+|.. ++... .+ ... | +++-+ .+++..++..+-+
T Consensus 149 ----------~l-veiv~~~~t~~~~~~~~~~~~~~lG~~-~v~v~--~~-~~G-~-----i~nrl~~a~~~EA~~l~~~ 207 (308)
T PRK06129 149 ----------PV-VEVVPAPWTAPATLARAEALYRAAGQS-PVRLR--RE-IDG-F-----VLNRLQGALLREAFRLVAD 207 (308)
T ss_pred ----------ce-EEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEec--CC-Ccc-H-----HHHHHHHHHHHHHHHHHHc
Confidence 12 236667778899999999999999964 22221 11 111 1 22222 2333333344445
Q ss_pred cCCCHHHHHHH
Q 012479 327 NGMNEDLAYKN 337 (462)
Q Consensus 327 ~G~~~e~A~~~ 337 (462)
.|+++++....
T Consensus 208 g~~~~~~id~~ 218 (308)
T PRK06129 208 GVASVDDIDAV 218 (308)
T ss_pred CCCCHHHHHHH
Confidence 66899887764
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-10 Score=112.96 Aligned_cols=196 Identities=17% Similarity=0.190 Sum_probs=120.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+++|+|||+|.||.++|.+|.+. |++|++++++ ....+.+.+.|... +.+.++++++||+||+++|+..
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRN-PEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHH
Confidence 37899999999999999999998 9888776654 34455566677654 5678899999999999999776
Q ss_pred HH-HHH---HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 191 QA-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 191 ~~-~vl---~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+. .++ +++.+.+++|++|++++.+... .+.+ .....+++++- +|-.-+... .. .|...++
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~--~~~~~g~~~~d-~pv~g~~~~----a~------~g~l~i~ 137 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA--ALKAKGIEMLD-APVSGGEPK----AI------DGTLSVM 137 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH--HHHHcCCcEEE-cCCCCCHHH----Hh------hCcEEEE
Confidence 64 455 3588889999999988877542 2222 01123455543 242211110 00 2444434
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchh-hhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLE-QEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~-~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
. .. +.+..+.+..+++.+|.. ++.+.-. .=....+. ....+.+.+ +++--++..+.+.|+++++.+.
T Consensus 138 ~-gg--~~~~~~~~~~~l~~~~~~-~~~~g~~g~a~~~Kl~-~n~~~~~~~-~~~~Ea~~l~~~~Gi~~~~~~~ 205 (296)
T PRK11559 138 V-GG--DKAIFDKYYDLMKAMAGS-VVHTGDIGAGNVTKLA-NQVIVALNI-AAMSEALVLATKAGVNPDLVYQ 205 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHhcCC-eEEeCCcCHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHH
Confidence 3 33 578899999999999974 2222100 00000011 111122222 2333345566788999987765
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=115.96 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=109.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCceecC---------CCcC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~d---------~~~~ 170 (462)
++||+|||.|.||.++|.+|..+ |++|+++++..+ ..+.+.+ .|..... ....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSAD-RLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 48999999999999999999999 999888776533 2333221 2321000 0134
Q ss_pred CHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHh
Q 012479 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~l 247 (462)
+. +.+++||+||.++|...+ ..++++|.+.++++++| +.++++.+..+.+ .+...-+++++|+.-|.+..
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 45 457899999999997644 46888999999999976 4788887766654 22233578898987776652
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.++ - +.++...+.+.++.+..++..+|..
T Consensus 150 ---------~~v-e-i~~g~~t~~~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 150 ---------KLV-E-LIRGIATDEATFEAAKEFVTKLGKT 178 (292)
T ss_pred ---------ceE-E-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 133 3 4557778999999999999999964
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-10 Score=122.06 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=104.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhcc---CCeEEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~~---ADvViL 184 (462)
+.+|||||+|+||.++|+||.++ |++|.|++|..++..+...+ .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 36899999999999999999999 99999998876654443332 24320 0015688888876 999999
Q ss_pred eecchhHH-HHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCce
Q 012479 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (462)
Q Consensus 185 avpd~a~~-~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ 260 (462)
++|+.... +|++.+.+.+++|++|++.+-... ....+ ..-.+++.++. +|-.-+..-. + .|-
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fld-apVSGG~~gA---~-------~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYLG-MGVSGGEEGA---R-------NGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-CCCcCCHHHh---c-------CCC-
Confidence 99987765 578889999999999998875422 11111 11134677664 4532122200 0 454
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHhCC
Q 012479 261 SSFAVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 261 aliav~qd~tgea~e~a~al~~aiG~ 286 (462)
+ +-+.. +.++.+.++-+++.+|.
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~ 167 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAA 167 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhh
Confidence 4 44455 67899999999999995
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.4e-11 Score=119.70 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=94.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--------CceecC--CCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--------G~~~~d--~~~~~~~eav~~ADv 181 (462)
+||+|||+|+||.++|.+|.+. |++|.++.|..+. .+...+. |..... ....+.+|+++++|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 7999999999999999999999 9999888775333 3333322 311000 014578888999999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEE-EEeccch-----HHHhhhccc--cCCCCccEEecccCCCchhhHHhhhcCcc
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-----LGHLQSMGL--DFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~-----i~~~~~~~i--~~p~~v~VV~v~Pngpg~~vr~lf~~G~~ 253 (462)
||+++|+....+++ +.++++.+| +.+.|+. ...+.+ .+ .....+ +++..|+.+...
T Consensus 78 Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~-~l~~~~~~~~-~~~~gP~~a~~~---------- 141 (328)
T PRK14618 78 AVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELAR-VLEFLTQARV-AVLSGPNHAEEI---------- 141 (328)
T ss_pred EEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHH-HHHHhcCCCe-EEEECccHHHHH----------
Confidence 99999999776665 445667654 4666763 222221 00 011222 346677665444
Q ss_pred ccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 254 ~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
++|.+.+... ...+.+..+.+..++...|..
T Consensus 142 --~~~~~~~~~~-~~~~~~~~~~v~~ll~~~~~~ 172 (328)
T PRK14618 142 --ARFLPAATVV-ASPEPGLARRVQAAFSGPSFR 172 (328)
T ss_pred --HcCCCeEEEE-EeCCHHHHHHHHHHhCCCcEE
Confidence 2344432222 223677889999999988853
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-10 Score=113.00 Aligned_cols=191 Identities=18% Similarity=0.126 Sum_probs=122.2
Q ss_pred EEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh-HHHH
Q 012479 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADN 194 (462)
Q Consensus 116 IIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a-~~~v 194 (462)
|||+|+||.++|++|.++ |++|++++|+.+ ..+...+.|... ..+..++++++|+||+++|+.. ..++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPD-AVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 999888776644 456666678764 5688899999999999999855 4677
Q ss_pred H---HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccC
Q 012479 195 Y---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (462)
Q Consensus 195 l---~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd 268 (462)
+ +++.+.+++|++|++++++... .+.+ .....+++++-. |-.-+.. ..+. |-..+++ ..
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~--~~~~~g~~~vda-Pv~Gg~~---~a~~-------g~l~~~~-gg- 134 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAE--LAAAHGAVFMDA-PVSGGVG---GARA-------GTLTFMV-GG- 134 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEEEC-CCCCCHH---HHhh-------CcEEEEE-CC-
Confidence 7 5788999999999999887543 2222 111246777653 6432222 2232 4444333 33
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccch-hhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 269 VDGRATNVALGWSVALGSPFTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 269 ~tgea~e~a~al~~aiG~~~viettf-~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
+.+..+.+..+++.+|.. ++..-. ..-....+. ....+.+.+.++.|++ ..+.+.|++++..+.
T Consensus 135 -~~~~~~~~~~~l~~~g~~-~~~~g~~g~g~~~Kl~-~n~~~~~~~~~~~Ea~-~la~~~Gld~~~~~~ 199 (288)
T TIGR01692 135 -VAEEFAAAEPVLGPMGRN-IVHCGDHGAGQAAKIC-NNMLLGISMIGTAEAM-ALGEKLGLDPKVLFE 199 (288)
T ss_pred -CHHHHHHHHHHHHHhcCC-eEeeCCCCHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHH
Confidence 457889999999999964 222211 010111111 1111222222334433 345789999987765
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-10 Score=115.29 Aligned_cols=198 Identities=14% Similarity=0.110 Sum_probs=120.9
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC---------ceecC--CCcCCHhhhhccC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G---------~~~~d--~~~~~~~eav~~A 179 (462)
++||+|||.|+||.++|..|.+. | +++++.++ +...+...+.+ +...+ ....+..++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 37999999999999999999998 7 45555554 33333333322 11000 0134677889999
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCc-EEEEeccchH-------HHhhhccccCCCCccEEecccCCCchhhHHhhhcC
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i-------~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G 251 (462)
|+||+++|++...+++++|.|++++++ +|+...|+.. ..+.+ .+|....++...|+.+...
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev-------- 147 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV-------- 147 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH--------
Confidence 999999999999999999999998887 5678888864 23333 2343333567777665444
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH---HHHHHHHHHHHcC
Q 012479 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG---IVESLFRRFTENG 328 (462)
Q Consensus 252 ~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa---liea~~d~~v~~G 328 (462)
++|.++.+.+... +.+..+.+.+++..-|. .-....|+.+.+ ++|.+-- +.-.+.+ +...|
T Consensus 148 ----~~g~~t~~via~~-~~~~~~~v~~lf~~~~~--------~v~~s~Di~gve--~~~alkNv~aia~G~~~-g~~~g 211 (341)
T PRK12439 148 ----AEGYAAAAVLAMP-DQHLATRLSPLFRTRRF--------RVYTTDDVVGVE--MAGALKNVFAIAVGMGY-SLGIG 211 (341)
T ss_pred ----HcCCCeEEEEEeC-CHHHHHHHHHHhCCCCE--------EEEEcCchHHHH--HHHHHHHHHHHHHHHHH-HhcCC
Confidence 2467664443332 34444555555544442 234456666655 6666663 3333444 33556
Q ss_pred CCHHHH-HHHHHHHHH
Q 012479 329 MNEDLA-YKNTVECIT 343 (462)
Q Consensus 329 ~~~e~A-~~~~~e~i~ 343 (462)
-...-| ...+++|+.
T Consensus 212 ~n~~aali~~~~~E~~ 227 (341)
T PRK12439 212 ENTRAMVIARALREMT 227 (341)
T ss_pred chHHHHHHHHHHHHHH
Confidence 444322 224555555
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-11 Score=109.28 Aligned_cols=114 Identities=26% Similarity=0.314 Sum_probs=73.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
.||+|||.|+.|.++++.|.+. |++|...+.++..+.+++... .. +....+..|+++++|+|||+|||+++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~--~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAF--IG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccc--cc-cccccccccccccCCEEEEEechHHH
Confidence 6999999999999999999999 987654443333444444432 11 22256788999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEeccch-HHHhhhccccCCCCccEEeccc
Q 012479 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (462)
Q Consensus 192 ~~vl~eI~~~--Lk~gaiL~~a~G~~-i~~~~~~~i~~p~~v~VV~v~P 237 (462)
.++.++|... .++|++|.+++|-. ...++- .-..+..+..+||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999987 89999999999853 322221 1123556677777
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-10 Score=120.37 Aligned_cols=147 Identities=17% Similarity=0.133 Sum_probs=103.2
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--C--ceecCCCcCCHhhhh---ccCCeEEEe
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETI---SGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G--~~~~d~~~~~~~eav---~~ADvViLa 185 (462)
+|||||+|+||.++|+||.++ |++|++++|+.++..+...+. | +.. ..+.++++ +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKTDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEEE
Confidence 489999999999999999999 999998888755544333321 2 332 45677766 468999999
Q ss_pred ecc-hhHHHHHHHHHhcCCCCcEEEEeccch----HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCce
Q 012479 186 ISD-AAQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (462)
Q Consensus 186 vpd-~a~~~vl~eI~~~Lk~gaiL~~a~G~~----i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ 260 (462)
+|+ .+..++++++.|+|++|++|++.+-.. ...... ...+++.+|.....|-....+ .|.
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~---l~~~gi~fvdapVsGG~~gA~-----------~G~- 135 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE---LKAKGILFVGSGVSGGEEGAR-----------KGP- 135 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH---HHhcCCEEEcCCCCCCHHHHh-----------cCC-
Confidence 998 556779999999999999999887432 112111 224578877655554222211 354
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 261 aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+ +-+.. +.++.+.++-+++.++..
T Consensus 136 ~-im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 S-IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred c-CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 4 33454 678999999999999964
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.1e-10 Score=117.89 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=102.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhc---cCCeEEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~---~ADvViL 184 (462)
|.+|||||+|+||.++|+||.++ |++|.+++|+.++..+..+. .|... ....+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 36899999999999999999999 99998888875543333221 25321 12568888886 5899999
Q ss_pred eecchh-HHHHHHHHHhcCCCCcEEEEeccch----HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCc
Q 012479 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (462)
Q Consensus 185 avpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~~----i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv 259 (462)
++||.. +.++++++.|+|++|++|++.+-.. .....+ ...+++.|+. +|-.-|..- =+ .|-
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fld-apVSGG~~g---A~-------~G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYLG-MGVSGGEEG---AR-------YGP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEEc-CCCCCCHHH---Hh-------cCC
Confidence 977665 4678899999999999998887432 112111 2235677664 342212210 11 354
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 260 ~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+ +-+.. +.++.+.++-+++.+|..
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 4 44455 578999999999999964
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.3e-10 Score=111.07 Aligned_cols=195 Identities=15% Similarity=0.106 Sum_probs=123.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc---CCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~---ADvViLavpd 188 (462)
++|||||+|+||.++|++|.+. |++|+++++..+ ..+.+.+.|... ..+.+|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPE-AVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 4899999999999999999998 999888776644 345556678775 5678888875 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 189 ~-a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
. ...++++.+.+.+++|+++++++.... ..+.+ ..-..++.++- +|..-+..-. + .|. .++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~a---~-------~g~-~~~- 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWGL---E-------RGY-CLM- 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHHH---h-------cCC-eEE-
Confidence 8 667788889999999998887754432 11211 11134677875 7754232210 1 354 433
Q ss_pred eccCCCHHHHHHHHHHHHHhCCC---cccccch-hhhccccchhhhHhHHhHHHHHHHHHHHHHHH--cCCCHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSP---FTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTE--NGMNEDLAYK 336 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~---~viettf-~~E~~~dlfgeqtvL~G~~paliea~~d~~v~--~G~~~e~A~~ 336 (462)
+.. +.+..+.++.+++.+|.. .++..-. -.-...++. .+.++.+.+.++.|++ ..+.+ .|++++..+.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~-~n~l~~~~~~~~aEa~-~l~~~~~~gld~~~~~~ 208 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMV-HNGIEYGMMQAYAEGF-ELLEASRFDLDLAAVAE 208 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcCCCCCHHHHHH
Confidence 343 578899999999999971 1221110 000111111 1223333333444433 34455 8999887665
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-10 Score=108.02 Aligned_cols=155 Identities=20% Similarity=0.162 Sum_probs=104.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-cCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
||+|+|||.|+||.++|+++.+. |++|+++.++.+++.+.+.+ .+... +..+++++++.+|+|||++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 58999999999999999999999 99999998876655544433 34332 1568999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecc-----chH-------------HHhhhccccCCCCccEEecccCCCchhhHHhhhcC
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHG-----FLL-------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G-----~~i-------------~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G 251 (462)
.+.++++++...+. |++|+++.= +.. ..+++ .+|.. +||..-=+.+... +.++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~a-kVVkAFn~i~a~~----l~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPGA-KVVKAFNTIPAAV----LADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCCc-chhhhhcccCHHH----hccC
Confidence 99999999998886 888775531 100 01111 22222 4443222333333 2322
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 252 ~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
... +.....++| . .+.++++.+.+|.+.+|..
T Consensus 143 ~~~-~~~~~v~va-g--DD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 143 AKP-GGRRDVLVA-G--DDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CCc-CCceeEEEe-c--CcHHHHHHHHHHHHhcCcc
Confidence 111 112333344 2 3678999999999999975
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-10 Score=107.94 Aligned_cols=126 Identities=14% Similarity=0.008 Sum_probs=96.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+||+|||. |.||..++..++++ |+.|. +++||+||||+|+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999998 99999999999999 98764 247899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccC-CCchhhHHhhhcCccccCCCceEEEeeccCC
Q 012479 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pn-gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~ 269 (462)
..++++++. .+|+|+++++-...+ ...+||+.||+ ||.+...++| .+++++ .++.
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~-------~~~~~vg~HPMfGp~~a~~~lf----------~~~iv~-~~~~ 99 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKK-------YSGKIVSIHPLFGPMSYNDGVH----------RTVIFI-NDIS 99 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHH-------hcCCEEecCCCCCCCcCccccc----------ceEEEE-CCCC
Confidence 999998875 278999999753221 13479999998 4444432222 255444 5566
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhcccc
Q 012479 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (462)
Q Consensus 270 tgea~e~a~al~~aiG~~~viettf~~E~~~d 301 (462)
++++++.++++++ |+ +++++|.++|++.-
T Consensus 100 ~~~~~~~~~~l~~--G~-~~~~~t~eeHD~~~ 128 (197)
T PRK06444 100 RDNYLNEINEMFR--GY-HFVEMTADEHDLLM 128 (197)
T ss_pred CHHHHHHHHHHHc--CC-EEEEeCHHHHHHHH
Confidence 7788899999998 74 79999999998653
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-09 Score=110.15 Aligned_cols=200 Identities=16% Similarity=0.120 Sum_probs=119.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-------------------HcC-ceecCCCcCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~d~~~~~ 171 (462)
|||+|||+|.||.++|.+|.+. |++|+++++...+ .+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5899999999999999999999 9998766654332 22221 123 332 457
Q ss_pred HhhhhccCCeEEEeecchh----------HHHHHHHHHhcCCCCcEEEEeccchHH---Hh----hhccccCCCCcc-EE
Q 012479 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLLG---HL----QSMGLDFPKNIG-VI 233 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a----------~~~vl~eI~~~Lk~gaiL~~a~G~~i~---~~----~~~~i~~p~~v~-VV 233 (462)
..+++++||+||+++|... ...++++|.+++++|++|++.+++... .+ .+.........+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7888999999999999653 566777899999999998887754211 11 110000011222 25
Q ss_pred ecccCC--CchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhC-CCcccccchhhhccccchhhhHhHH
Q 012479 234 AVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLEQEYRSDIFGERGILL 310 (462)
Q Consensus 234 ~v~Png--pg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG-~~~viettf~~E~~~dlfgeqtvL~ 310 (462)
..+|.. +|..+.+.+. .+.++. . .+.+..+.+..+++.++ ...+..++. ..-+.-.+-+.+ +.
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~-G--~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~Ae~~Kl~~N~-~~ 215 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVG-G--ETEEAGEAVAELYAPIIEDGPVLVTSI-ETAEMIKLAENT-FR 215 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhccCCCEEcCCH-HHHHHHHHHHHH-HH
Confidence 667743 3333222221 223233 3 37889999999999997 332222221 211111121222 22
Q ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 311 GAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 311 G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
+.--+++.-+...+.+.|+++++.+.
T Consensus 216 a~~ia~~nE~~~la~~~GiD~~~v~~ 241 (411)
T TIGR03026 216 AVKIAFANELARICEALGIDVYEVIE 241 (411)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 22234666667777888998877665
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.6e-10 Score=112.29 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=123.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav-~~ADvViLavpd~a 190 (462)
.+|||||+|+||.=+|.-|.+. |+.+++..|.+ --..|+..|..- ...+.+.+ +..|+|++||.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 6899999999999999999999 99888887765 345556666542 34455544 57899999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEeccch---HHHhhhccccCCCCccEEecccC-CCchhhHHhhhcCccccCCCceEEEee
Q 012479 191 QADNYEKIFSC-MKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 191 ~~~vl~eI~~~-Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pn-gpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
+..++...-+. +|.|+++++.-.++ ...+++ .+|+|++++.+||+ ||-.+ . . + ++|.|.++--
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpmfGPksv-n---h-~----wqglpfVydk 188 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPMFGPKSV-N---H-E----WQGLPFVYDK 188 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCCcCCCcC-C---C-c----cccCceEEEE
Confidence 99998876655 89999988776653 333444 78999999999998 55422 1 1 1 4789987654
Q ss_pred ccC----CCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 012479 266 HQD----VDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (462)
Q Consensus 266 ~qd----~tgea~e~a~al~~aiG~~~viettf~~E~~~ 300 (462)
+.- ...+..|...+++...|+ ..++.+.++|++.
T Consensus 189 vRig~~~~r~ercE~fleIf~cegc-kmVemS~eeHDki 226 (480)
T KOG2380|consen 189 VRIGYAASRPERCEFFLEIFACEGC-KMVEMSYEEHDKI 226 (480)
T ss_pred eeccccccchHHHHHHHHHHHhcCC-eEEEEEeeccccc
Confidence 432 226889999999999998 4777777888755
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-09 Score=115.35 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=111.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcC-------------cee
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTE 164 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G-------------~~~ 164 (462)
..+++|+|||+|.||..||.++..+ |++|++.++..+. .+. ..+.| +..
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~ 77 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAGA-AAAARDGIAARLAKLVEKGKLTAEQADAALARLRP 77 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 3468999999999999999999999 9999887766443 333 24455 232
Q ss_pred cCCCcCCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCc
Q 012479 165 ENGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMG 241 (462)
Q Consensus 165 ~d~~~~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg 241 (462)
..+.++ +.+||+||-++|..... .++.++...++++++| +.++.+.+..+.. .....-+++++|.--|.
T Consensus 78 ----~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa 149 (507)
T PRK08268 78 ----VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPV 149 (507)
T ss_pred ----eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCc
Confidence 356654 56999999999987764 4777888888999988 5778887765554 22222468898988887
Q ss_pred hhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 242 ~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.. ...- ++.+...+.+.++.+..+++.+|..
T Consensus 150 ~v~-------------~LvE-vv~g~~Ts~~~~~~~~~l~~~lgk~ 181 (507)
T PRK08268 150 PLM-------------KLVE-VVSGLATDPAVADALYALARAWGKT 181 (507)
T ss_pred ccC-------------eeEE-EeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 772 2333 4556778899999999999999975
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-09 Score=110.54 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=111.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCceecC-----CCcCCHhh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d-----~~~~~~~e 174 (462)
++||+|||.|.||.++|..+..+ |++|++.++..+ ..+.+ .+.|..... ..+.++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPG-AEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 999988776533 12221 122221100 11457889
Q ss_pred hhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcC
Q 012479 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (462)
Q Consensus 175 av~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G 251 (462)
++++||+|+-++|..... .++.+|..+++++++|. -++++.+..+.+ .+...-+++.+||--|.+..+
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~p------ 150 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLLP------ 150 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccCc------
Confidence 999999999999977653 58889999999999764 445666655544 223334799999988887721
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 252 ~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.-- +.++...+++.++.+.+++..+|..
T Consensus 151 -------LVE-Vv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 151 -------LVE-VLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred -------eEE-EeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 122 4567888999999999999999964
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-09 Score=106.22 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=66.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
.+ |||+|||+|+||.++|+.|.+. |++|.++.|... .++.++++++|+||+++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 35 7999999999999999999999 999988877531 2567888999999999999
Q ss_pred hhHHHHHHHHHhc-CCCCcEEEEec
Q 012479 189 AAQADNYEKIFSC-MKPNSILGLSH 212 (462)
Q Consensus 189 ~a~~~vl~eI~~~-Lk~gaiL~~a~ 212 (462)
..+.++++++.++ ++++++|+++.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 9888999988875 78888776544
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.6e-09 Score=122.89 Aligned_cols=199 Identities=17% Similarity=0.141 Sum_probs=121.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch-
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA- 189 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~- 189 (462)
+++|||||+|+||.++|.+|.+. |++|+++++...+ .+...+.|... ..++.+++++||+||+++|+.
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~ 392 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEV 392 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChH
Confidence 38999999999999999999999 9998888776443 44455567654 568899999999999999954
Q ss_pred hHHHHHH---HHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 190 AQADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 190 a~~~vl~---eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+..+++. .+.+.+++|+++++++-+... .+.+.....+.++.++- +|-..+... = ..|-..++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD-APVsGg~~~---A-------~~G~L~im 461 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD-APVSGGVKR---A-------AMGTLTIM 461 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE-ccCCCChhh---h-------hcCCceEE
Confidence 4456762 478889999999888765432 22110000014566553 343322221 0 13444434
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCccccc-chhhhccccchhhhHhHHhHHH-HHHHHHHHHHHHcCCCHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFAT-TLEQEYRSDIFGERGILLGAVH-GIVESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viet-tf~~E~~~dlfgeqtvL~G~~p-aliea~~d~~v~~G~~~e~A~~~ 337 (462)
+ .. +.+.++.++.+++.+|...++-. ..-.-....+. .+ .++++.- ++.|+ +..+.++|++++..+..
T Consensus 462 v-gG--~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~-nN-~l~~~~~aa~aEa-l~la~k~Gld~~~l~ev 531 (1378)
T PLN02858 462 A-SG--TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMV-NQ-LLAGVHIASAAEA-MAFGARLGLNTRKLFDI 531 (1378)
T ss_pred E-EC--CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHH-HH-HHHHHHHHHHHHH-HHHHHHcCCCHHHHHHH
Confidence 4 33 56789999999999996421101 01111111111 01 1222222 23333 34457899999987763
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=102.07 Aligned_cols=216 Identities=16% Similarity=0.161 Sum_probs=136.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceecC---------CCcC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~~ 170 (462)
+++|+|||.|.||..+|..+..+ |++|++.++..+. .+. +.+.|..... ..+.
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEEL-ATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47999999999999999999999 9999887766442 222 3334432100 0134
Q ss_pred CHhhhhccCCeEEEeecchhHH--HHHHHHHhcC-CCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHH
Q 012479 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCM-KPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~~--~vl~eI~~~L-k~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~ 246 (462)
+. +++++||+||-++|.+... +++.++...+ +++++|. -++++.+..+.. .....-+++.+|+-.|.+..
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 56 5689999999999988774 4778888887 8899875 455666655543 22222369999998887772
Q ss_pred hhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHH-HhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHH
Q 012479 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (462)
Q Consensus 247 lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~-aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v 325 (462)
+..- +.++...+++.++.+..++. .+|...+. . .|. .-| ++--.+..++...+ .++
T Consensus 152 -----------~lvE-lv~~~~T~~~~~~~~~~~~~~~lgk~pv~-v---~d~--pGf----i~nRi~~~~~~Ea~-~ll 208 (286)
T PRK07819 152 -----------PLVE-LVPTLVTSEATVARAEEFASDVLGKQVVR-A---QDR--SGF----VVNALLVPYLLSAI-RMV 208 (286)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHhCCCCceE-e---cCC--CCh----HHHHHHHHHHHHHH-HHH
Confidence 2334 55688899999999999988 59964211 1 111 111 11122333333333 456
Q ss_pred HcCC-CHHHHHHHHHHH---HHHHHHHHHHHhcHHHHHHhcC
Q 012479 326 ENGM-NEDLAYKNTVEC---ITGIISKIISTQGMLAVYNSFS 363 (462)
Q Consensus 326 ~~G~-~~e~A~~~~~e~---i~Gli~~li~e~G~~~m~~~vs 363 (462)
+.|+ ++++.=...... =.| .-.++...|++.+++...
T Consensus 209 ~eGv~~~~dID~~~~~g~G~p~G-pf~~~D~~Gld~~~~~~~ 249 (286)
T PRK07819 209 ESGFATAEDIDKAMVLGCAHPMG-PLRLSDLVGLDTVKAIAD 249 (286)
T ss_pred HhCCCCHHHHHHHHHhCCCCCCC-HHHHHHHhccHHHHHHHH
Confidence 7775 465533322111 115 456777778877666654
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-08 Score=103.78 Aligned_cols=202 Identities=16% Similarity=0.096 Sum_probs=120.6
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh---------------
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea--------------- 175 (462)
++||+|||+|.||.++|.+|.+. |++|++.+++ ++..+. ...|.... .....++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~-~~~v~~-l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDIN-QHAVDT-INRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCC-HHHHHH-HHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 9998766554 333333 33343210 01122222
Q ss_pred hccCCeEEEeecc----------hhHHHHHHHHHhcCCCCcEEEEeccchHH-------Hhhhcccc--CC----CCcc-
Q 012479 176 ISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLD--FP----KNIG- 231 (462)
Q Consensus 176 v~~ADvViLavpd----------~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~-------~~~~~~i~--~p----~~v~- 231 (462)
+++||+||+|+|+ ..+..+++.|.+++++|++|++.+.+... .+.+.... .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3489999999997 46667888899999999998876654211 11111111 11 0111
Q ss_pred EEeccc--CCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH
Q 012479 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL 309 (462)
Q Consensus 232 VV~v~P--ngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL 309 (462)
.+...| -.+|....+... .+-++. . .+++..+.++.++..++...++.++. .+-+.-.+-+.+ +
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~vvg-G--~~~~~~~~~~~ly~~~~~~~~~~~~~-~~Ae~~Kl~~N~-~ 218 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDRVIG-G--MTPVCSARASELYKIFLEGECVVTNS-RTAEMCKLTENS-F 218 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhcCCCeeeCCH-HHHHHHHHHHHH-H
Confidence 245677 356666443322 334332 2 36788999999999998643332322 222222222322 2
Q ss_pred HhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 310 LGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 310 ~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
...--+++.-+...+-+.|+++++..+
T Consensus 219 ~a~~ia~~nE~~~lae~~GiD~~~v~~ 245 (415)
T PRK11064 219 RDVNIAFANELSLICADQGINVWELIR 245 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 233334666677777788999876654
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-08 Score=102.68 Aligned_cols=256 Identities=16% Similarity=0.220 Sum_probs=144.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCC-------cEEEEEecCCch----hHHHHHHc--------CceecCC--C
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAA--------GFTEENG--T 168 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-------~~Vivg~r~~~~----s~~~A~~~--------G~~~~d~--~ 168 (462)
+.+||+|||.|++|.|+|.-|.+. | ++|.++.|+..- ..+.-.+. |+...+. .
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ 83 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVA 83 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEE
Confidence 336899999999999999999987 6 678887766421 11111111 1111000 1
Q ss_pred cCCHhhhhccCCeEEEeecchhHHHHHHHHHh--cCCCCc-EEEEeccchHHH---------hhhccccCCCCccEEecc
Q 012479 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNS-ILGLSHGFLLGH---------LQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~~~vl~eI~~--~Lk~ga-iL~~a~G~~i~~---------~~~~~i~~p~~v~VV~v~ 236 (462)
+.|+.+++++||+|+++||++...++++++.+ ++++++ +|+.+.|+.... +.+ .++..+-+ ..
T Consensus 84 tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e---~l~~~~~~-Ls- 158 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE---ELGIPCCA-LS- 158 (365)
T ss_pred ecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH---HhCCCeEE-EE-
Confidence 45778899999999999999999999999999 888776 467888885321 111 12222222 22
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG- 315 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa- 315 (462)
||.+. ++-. +|.++.+++... + .+.+..+.+-+... .|.-....|+.|.+ |||.+--
T Consensus 159 --GPs~A--~Eva-------~~~pt~~vias~-~---~~~a~~~~~lf~~~-----~frvy~s~Dv~GvE--l~galKNv 216 (365)
T PTZ00345 159 --GANVA--NDVA-------REEFSEATIGCE-D---KDDALIWQRLFDRP-----YFKINCVPDVIGVE--VCGALKNI 216 (365)
T ss_pred --CCCHH--HHHH-------cCCCcEEEEEeC-C---HHHHHHHHHHhCCC-----cEEEEEcCCcccch--hhHHHHHH
Confidence 44443 2222 356665554432 2 33444445555544 33334566788877 7888774
Q ss_pred --HHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHH----------HhcHHHHHHhcCCcchhhhchhhccCc--hh
Q 012479 316 --IVESLFRRFTENGMNEDLAYK-NTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSASY--YP 380 (462)
Q Consensus 316 --liea~~d~~v~~G~~~e~A~~-~~~e~i~Gli~~li~----------e~G~~~m~~~vs~~~~aeyg~~~~~~~--~~ 380 (462)
+.--+.|.+ ..|..-.-|+. .++.||.- +++.+. -.|++.|.-.|+......||..+.... ++
T Consensus 217 iAIa~Gi~dGl-~~G~N~kaalitrgl~Em~~-l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~ 294 (365)
T PTZ00345 217 IALAAGFCDGL-GLGTNTKSAIIRIGLEEMKL-FGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKS 294 (365)
T ss_pred HHHHHHHHHhc-CCChhHHHHHHHHHHHHHHH-HHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCC
Confidence 222222322 45654444444 56666653 444442 134555555554333445676653222 34
Q ss_pred HHHHHHHHHH-hccCChhhhH
Q 012479 381 CMEILYECYE-DVAAGSEIRS 400 (462)
Q Consensus 381 ~~~~m~e~~~-~i~~G~far~ 400 (462)
..+++++++. .+--|-.+-.
T Consensus 295 ~~~~~~~~~~~~~vEG~~t~~ 315 (365)
T PTZ00345 295 WEEIEAELLNGQKLQGTVTLK 315 (365)
T ss_pred HHHHHHHhhCCcEechHHHHH
Confidence 4444444322 3444555443
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-08 Score=99.03 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=97.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC-------CCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d-------~~~~~~~eav~~ADvViL 184 (462)
|||+|||.|+||..+|..|.++ |++|.+..|..+ ..+...+.|+...+ ..+.+..++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5899999999999999999998 888887776433 34445555763200 012344444 89999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcE-EEEeccch-HHHhhhccccCCCCccEE------ecccCCCchhhHHhhhcCccccC
Q 012479 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-LGHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEING 256 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~-i~~~~~~~i~~p~~v~VV------~v~Pngpg~~vr~lf~~G~~~~G 256 (462)
++|..+..++++.+.+++.++++ |+...|+. ...+.+ .+++. .++ .+...+|+.... .|
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~---~~~~~-~i~~~~~~~~~~~~~p~~v~~---------~~ 139 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA---YIGPE-RVLGGVVTHAAELEGPGVVRH---------TG 139 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---hcCcc-cEEEEEEEEeeEecCCCEEEE---------cC
Confidence 99999999999999999988764 56777885 333332 23332 232 222334444311 12
Q ss_pred CCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 257 AGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 257 ~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.|... +...++.. +..+.+.+++...|..
T Consensus 140 ~g~~~-ig~~~~~~-~~~~~l~~~l~~~~~~ 168 (304)
T PRK06522 140 GGRLK-IGEPDGES-AAAEALADLLNAAGLD 168 (304)
T ss_pred CCCEE-EeCCCCCc-HHHHHHHHHHHhcCCC
Confidence 45544 44333322 4456666778877754
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-08 Score=107.46 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=109.6
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceecC---------CCc
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~ 169 (462)
.++||+|||.|.||..||.++.++ |++|++++++.++ .+. ..+.|..... ..+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~ 76 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV 76 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe
Confidence 358999999999999999999999 9999888776443 222 2334421000 014
Q ss_pred CCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHH
Q 012479 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~ 246 (462)
.++++ +.+||+||-++|..... .++.++.+.++++++|. -++++.+..+.. .+....++++.|.--|.+..
T Consensus 77 ~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~-- 150 (503)
T TIGR02279 77 TDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM-- 150 (503)
T ss_pred CCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC--
Confidence 46654 57999999999976553 47788888899998764 666776654443 22333478999988877772
Q ss_pred hhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 247 lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
...- +..+...+++.++.+..+++.+|..
T Consensus 151 -----------~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 151 -----------ALVE-VVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2333 4557788999999999999999975
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6e-08 Score=98.35 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=70.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--Cce------ecCC--CcCCHhhhh-ccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EENG--TLGDIYETI-SGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~------~~d~--~~~~~~eav-~~AD 180 (462)
|||+|||.|+||.++|..|.++ |++|.++.|... ..+.-.+. +.. ..+. ...+..+++ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 5799999999999999999999 998887776432 22222221 111 0000 124556666 5899
Q ss_pred eEEEeecchhHHHHHHHHHh-cCCCCc-EEEEeccch
Q 012479 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~-~Lk~ga-iL~~a~G~~ 215 (462)
+||++||+....++++++.+ ++++++ +|+...|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 567778883
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=110.61 Aligned_cols=148 Identities=22% Similarity=0.230 Sum_probs=99.5
Q ss_pred eecCccccc-----c---cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec
Q 012479 94 VRGGRDLFN-----L---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (462)
Q Consensus 94 ~~~~~~~f~-----~---~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (462)
+|+|+|... . ....|.| ++|||||+|+||.++|+.|+.. |.+|+++++.... ..+...|+.
T Consensus 126 ~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~~~~-- 194 (333)
T PRK13243 126 VRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKELGAE-- 194 (333)
T ss_pred HHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHHcCCE--
Confidence 456778532 0 1257899 9999999999999999999988 9888766654322 233445654
Q ss_pred CCCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~ 236 (462)
..+.+|++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..+++.. ......||....
T Consensus 195 ---~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~-i~gAaLDV~~~E 270 (333)
T PRK13243 195 ---YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGW-IAGAGLDVFEEE 270 (333)
T ss_pred ---ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCC-eEEEEeccCCCC
Confidence 35889999999999999997665 45664 7889999999987554 421 12222211 112346777777
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeeccC
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd 268 (462)
|- |.+. ++.- -+.+++||--
T Consensus 271 P~-~~~p---L~~~--------~nvilTPHia 290 (333)
T PRK13243 271 PY-YNEE---LFSL--------KNVVLAPHIG 290 (333)
T ss_pred CC-CCch---hhcC--------CCEEECCcCC
Confidence 74 3222 3331 3677888873
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-09 Score=102.12 Aligned_cols=107 Identities=22% Similarity=0.273 Sum_probs=78.7
Q ss_pred eecCcc--cccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC
Q 012479 94 VRGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (462)
Q Consensus 94 ~~~~~~--~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (462)
++.|+| ........+.| ++|||||+|.+|..+|+.|+.. |.+|++.++.... ...+...++. ..+
T Consensus 18 ~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~-----~~~ 84 (178)
T PF02826_consen 18 QRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE-----YVS 84 (178)
T ss_dssp HHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE-----ESS
T ss_pred HHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce-----eee
Confidence 367788 33333589999 9999999999999999999987 9998777665432 3335566775 569
Q ss_pred HhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEe-cc
Q 012479 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HG 213 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a-~G 213 (462)
.+|++++||+|++++|-... ..++. +.+..||+|++++-+ -|
T Consensus 85 l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 85 LDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp HHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSG
T ss_pred hhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccch
Confidence 99999999999999995544 35665 678899999987744 45
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.9e-09 Score=107.44 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=106.9
Q ss_pred eecCccccccc-ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 012479 94 VRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (462)
Q Consensus 94 ~~~~~~~f~~~-~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (462)
.|+|.|..... ...|.| ||+||||+|.+|..+|..++.. |++|+++++..++ +.+...+... ..+.
T Consensus 125 ~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~----~~~L 191 (324)
T COG0111 125 QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG----VDSL 191 (324)
T ss_pred HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee----cccH
Confidence 38899987222 358899 9999999999999999999988 9998776653333 2344455553 5689
Q ss_pred hhhhccCCeEEEeecchh-HHHHHH-HHHhcCCCCcEEEEec-cc------hHHHhhhccccCCCCccEEecccCCCchh
Q 012479 173 YETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILGLSH-GF------LLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a-~~~vl~-eI~~~Lk~gaiL~~a~-G~------~i~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
++++++||+|++++|-.. ...++. +.+..||+|++++-++ |- .+..+++..+. ...+||.-..|-.+.+.
T Consensus 192 d~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~-gA~lDVf~~EPl~~~~p 270 (324)
T COG0111 192 DELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA-GAALDVFEEEPLPADSP 270 (324)
T ss_pred HHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc-eEEecCCCCCCCCCCCh
Confidence 999999999999999544 455776 6788899999877554 42 12333332222 34678888888766644
Q ss_pred hHHhhhcCccccCCCceEEEeeccC-CCHH
Q 012479 244 VRRLYVQGKEINGAGINSSFAVHQD-VDGR 272 (462)
Q Consensus 244 vr~lf~~G~~~~G~Gv~aliav~qd-~tge 272 (462)
+|.- -+.+++||-- .|.+
T Consensus 271 ---L~~~--------pnV~~TPHia~~T~e 289 (324)
T COG0111 271 ---LWDL--------PNVILTPHIGGSTDE 289 (324)
T ss_pred ---hhcC--------CCeEECCcccccCHH
Confidence 4442 3566688773 3444
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-08 Score=119.07 Aligned_cols=197 Identities=13% Similarity=0.065 Sum_probs=122.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
++|||||+|+||..||.||.+. |++|.+++|..++ .+...+.|... +.++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTPL-MEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9999888776444 45555678765 67899999999999999998776
Q ss_pred H-HHH---HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCC--ccEEecccCCCchhhHHhhhcCccccCCCceEE
Q 012479 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (462)
Q Consensus 192 ~-~vl---~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~--v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~al 262 (462)
. +++ +.+.+.+++|+++++++-+... .+.+ ..-..+ +.+|- +|-.-+.. .-+ .|--.+
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~--~l~~~g~~~~~lD-aPVsGg~~---~A~-------~G~L~i 140 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEK--KLTERKEQIFLVD-AYVSKGMS---DLL-------NGKLMI 140 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHH--HHHhcCCceEEEE-ccCcCCHH---HHh-------cCCeEE
Confidence 4 576 3588889999999988755422 2221 011233 55543 44321111 111 244443
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCccccc-chhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 012479 263 FAVHQDVDGRATNVALGWSVALGSPFTFAT-TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 263 iav~qd~tgea~e~a~al~~aiG~~~viet-tf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~ 337 (462)
++ .. +.+..+.++.+++.+|...+... ..-.=....+.. +.++.+.+.++.|++ -.+.+.|++++..+..
T Consensus 141 mv-GG--~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~n-N~l~~~~~~a~aEAl-~la~~~Gld~~~l~~v 211 (1378)
T PLN02858 141 IA-SG--RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVN-ELLEGIHLVASAEAM-ALGVRAGIHPWIIYDI 211 (1378)
T ss_pred EE-cC--CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHH-HHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHH
Confidence 33 33 56789999999999996411100 000000011110 011111222344443 2357899999988774
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-09 Score=97.63 Aligned_cols=95 Identities=23% Similarity=0.348 Sum_probs=69.7
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--------C--CCcCCHhhhhccCCeE
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------N--GTLGDIYETISGSDLV 182 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--------d--~~~~~~~eav~~ADvV 182 (462)
||+|||.|++|.++|.-|.+. |++|.++.|+.. ..+.-.+.+.... + ..+.|+++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 999988877643 3333333222100 0 0146788999999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEE-Eeccc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~-~a~G~ 214 (462)
++++|.+.+.+++++|.|+++++++|. .+.||
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998754 55677
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.9e-09 Score=109.71 Aligned_cols=159 Identities=18% Similarity=0.106 Sum_probs=106.2
Q ss_pred eecCcccccc---cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC
Q 012479 94 VRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (462)
Q Consensus 94 ~~~~~~~f~~---~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (462)
++.|+|.... ....|.| ++|||||+|+||..+|+.|+.. |.+|++.++... ..+.....|+.. ..
T Consensus 173 ~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g~~~----~~ 240 (385)
T PRK07574 173 AVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELGLTY----HV 240 (385)
T ss_pred HHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcCcee----cC
Confidence 4678896532 2367999 9999999999999999999987 999877766532 223334456653 46
Q ss_pred CHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCc
Q 012479 171 DIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg 241 (462)
+.+|++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..+++..+ .....||....|--+.
T Consensus 241 ~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i-~GAaLDV~~~EPlp~d 319 (385)
T PRK07574 241 SFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHL-AGYAGDVWFPQPAPAD 319 (385)
T ss_pred CHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCc-cEEEEecCCCCCCCCC
Confidence 899999999999999997665 45776 6889999999887554 421 122232111 1234677777775434
Q ss_pred hhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHH
Q 012479 242 PSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (462)
Q Consensus 242 ~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~ 276 (462)
+. ++.- -+.+++||- ..+.+..+.
T Consensus 320 ~p---L~~~--------pNvilTPHiag~T~e~~~~ 344 (385)
T PRK07574 320 HP---WRTM--------PRNGMTPHISGTTLSAQAR 344 (385)
T ss_pred Ch---HHhC--------CCeEECCccccCcHHHHHH
Confidence 33 2221 366788875 345555443
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-09 Score=105.51 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=99.7
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
+|+|+|..... ..|.| ++|||||+|+||.++|+.|+.. |++|+++++...+ .|+.. ...+.+
T Consensus 107 ~~~g~w~~~~~-~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~l~ 168 (303)
T PRK06436 107 MKNGNFKQSPT-KLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYMEPE 168 (303)
T ss_pred HHcCCCCCCCC-CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCCHH
Confidence 46788976543 68999 9999999999999999988877 8898776654221 23321 035789
Q ss_pred hhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhh
Q 012479 174 ETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 174 eav~~ADvViLavpd~a~~-~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
+++++||+|++++|..... .++. +....||+|++++.++ |-. +..+++ +.......||..-.|..+.+.
T Consensus 169 ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~-g~i~~a~lDV~~~EP~~~~~~- 246 (303)
T PRK06436 169 DIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRN-HNDKYYLSDVWWNEPIITETN- 246 (303)
T ss_pred HHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCceEEEEccCCCCCCCccCC-
Confidence 9999999999999977664 4665 6888899999887554 421 112222 111112356766666433221
Q ss_pred HHhhhcCccccCCCceEEEeecc--CCCHHHHHH
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQ--DVDGRATNV 276 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~q--d~tgea~e~ 276 (462)
=-+++++||- ..+.+..+.
T Consensus 247 -------------~~nviiTPHi~g~~t~e~~~~ 267 (303)
T PRK06436 247 -------------PDNVILSPHVAGGMSGEIMQP 267 (303)
T ss_pred -------------CCCEEECCccccccCHHHHHH
Confidence 1367899993 356655444
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-07 Score=92.39 Aligned_cols=227 Identities=14% Similarity=0.185 Sum_probs=156.7
Q ss_pred CCEEEEEcccch--------------------HHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcCceecC
Q 012479 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEEN 166 (462)
Q Consensus 111 ikkIgIIG~G~m--------------------G~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G~~~~d 166 (462)
++||+|.|.||| |..+|-.+... |++|+....+ +...|++-+..|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 378999999987 55666666666 8888887543 346699999999987
Q ss_pred CCcCCHhhhhccCCeEEEeecch-hHHHHHHHHHhcCCCCcEEEEec---cchHHHhhhccccC-CCCccEEecccC-CC
Q 012479 167 GTLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSILGLSH---GFLLGHLQSMGLDF-PKNIGVIAVCPK-GM 240 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~-a~~~vl~eI~~~Lk~gaiL~~a~---G~~i~~~~~~~i~~-p~~v~VV~v~Pn-gp 240 (462)
+.|..++++.+++.+|-||-. ..-.+.++|.+++..|++|+-.+ -+.+.+--+..+.. ++|+-|-..||- -|
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvP 150 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVP 150 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCC
Confidence 677889999999999999987 66789999999999999986443 33332221222333 368888888886 46
Q ss_pred chhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-HHHH
Q 012479 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVES 319 (462)
Q Consensus 241 g~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-liea 319 (462)
|....+.|.-+ |++-.. -.-+|+++.+++..++++.|.. ++.+ ..|+-...+-++-.+.+ .+++
T Consensus 151 Gtp~h~~yvia----gr~t~g----~elATeEQi~r~velaes~Gk~-~yv~------padv~s~VaDmg~lvtav~l~g 215 (340)
T COG4007 151 GTPQHGHYVIA----GRSTEG----KELATEEQIERCVELAESTGKE-VYVL------PADVVSAVADMGVLVTAVALSG 215 (340)
T ss_pred CCCCCceEEEe----ccCCCc----eeeccHHHHHHHHHHHHhcCCc-eEec------CHHHHHHhhhhHHHHHHHHHHH
Confidence 66666666654 222221 2246889999999999999964 2211 22333333323222222 3333
Q ss_pred HHHH---HH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 012479 320 LFRR---FT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (462)
Q Consensus 320 ~~d~---~v-~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs 363 (462)
..|. +. -.|-|.|+--+.+..++. -++-++-.+|+..|...+.
T Consensus 216 vldyy~Vg~qIi~AP~eMIekQilmtLq-TmAsLvetsGi~g~~~~~n 262 (340)
T COG4007 216 VLDYYYVGTQIIGAPKEMIEKQILMTLQ-TMASLVETSGIDGMLKALN 262 (340)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHHhcchhHHHHhcC
Confidence 3333 33 469999999887777776 4799999999999988766
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-09 Score=109.44 Aligned_cols=158 Identities=15% Similarity=0.047 Sum_probs=105.7
Q ss_pred eecCccccc---ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC
Q 012479 94 VRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (462)
Q Consensus 94 ~~~~~~~f~---~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (462)
++.|+|... .....|.| ++|||||+|+||..+|+.|+.. |.+|+++++.. ...+...+.|+.. ..
T Consensus 180 ~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g~~~----~~ 247 (386)
T PLN03139 180 VVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETGAKF----EE 247 (386)
T ss_pred HHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcCcee----cC
Confidence 567889642 22367999 9999999999999999999987 99987765542 2233344556653 45
Q ss_pred CHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCc
Q 012479 171 DIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg 241 (462)
+.+|++++||+|++++|.... ..++. +++..||+|++|+.++ |-. +..+++.. ......||..-.|..+.
T Consensus 248 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~-l~GAaLDV~~~EPlp~d 326 (386)
T PLN03139 248 DLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGH-IGGYGGDVWYPQPAPKD 326 (386)
T ss_pred CHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCC-ceEEEEcCCCCCCCCCC
Confidence 899999999999999996655 45775 6899999999887665 421 12222211 11234677777775544
Q ss_pred hhhHHhhhcCccccCCCceEEEeeccC-CCHHHHH
Q 012479 242 PSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (462)
Q Consensus 242 ~~vr~lf~~G~~~~G~Gv~aliav~qd-~tgea~e 275 (462)
+.. +.- -+.+++||-. .+.++.+
T Consensus 327 ~pL---~~~--------pNvilTPHiag~t~~~~~ 350 (386)
T PLN03139 327 HPW---RYM--------PNHAMTPHISGTTIDAQL 350 (386)
T ss_pred Chh---hcC--------CCeEEcccccccCHHHHH
Confidence 432 221 3667788763 3444443
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-07 Score=95.95 Aligned_cols=171 Identities=17% Similarity=0.248 Sum_probs=105.3
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCC--------cEEEEEecCC----chhHHHHHH--------cCceecCC--CcC
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG----SRSFAEARA--------AGFTEENG--TLG 170 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G--------~~Vivg~r~~----~~s~~~A~~--------~G~~~~d~--~~~ 170 (462)
||+|||.|+.|.++|.-|.++ | ++|.++.|.. +...+.-.+ .|+...+. .+.
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 699999999999999999988 7 7888887632 221111111 13211000 135
Q ss_pred CHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchHH---------HhhhccccCCCCccEEecccCCC
Q 012479 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG---------HLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~---------~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
|+++++++||+||+++|++.+.++++++.++++++++ |+.+.|+... .+++ .++..+-++ .||
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e---~l~~~~~~l----sGP 147 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEE---ELGIPCGVL----SGA 147 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHH---HhCCCeEEe----eCc
Confidence 7889999999999999999999999999999998874 6788888542 1111 122222222 244
Q ss_pred chhhHHhhhcCccccCCCceEEEeecc-CCC--HHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH
Q 012479 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVD--GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG 315 (462)
Q Consensus 241 g~~vr~lf~~G~~~~G~Gv~aliav~q-d~t--gea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa 315 (462)
.+. .+-. +|.|+-+++.. |.+ .+..+.+.++ +-.. .|.-....|+.|.+ |||.+--
T Consensus 148 ~~A--~Eva-------~~~pt~~~ia~~~~~~~~~~a~~~~~l---f~~~-----~frv~~s~Dv~GvE--l~galKN 206 (342)
T TIGR03376 148 NLA--NEVA-------KEKFSETTVGYRDPADFDVDARVLKAL---FHRP-----YFRVNVVDDVAGVE--IAGALKN 206 (342)
T ss_pred chH--HHHH-------cCCCceEEEEeCCCcchHHHHHHHHHH---hCCC-----CEEEEEcCCcccch--hhHHHHH
Confidence 444 3333 35655444433 222 3444444444 4443 33334456788777 8888874
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.5e-08 Score=91.54 Aligned_cols=150 Identities=16% Similarity=0.199 Sum_probs=100.2
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-----------HcCceec---------CCCcCCH
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE---------NGTLGDI 172 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-----------~~G~~~~---------d~~~~~~ 172 (462)
||+|||.|.||.++|..+..+ |++|++.+.+.+ ..+.++ +.|-... -....+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 799999999999999999999 999988776533 222211 1121000 0014678
Q ss_pred hhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhh
Q 012479 173 YETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~ 249 (462)
++++ +||+||=++|.... .++|.++.+.+.++++| +-++++.+..+.. .++..-+++.+|+-.|.+..+
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~~---- 145 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLMP---- 145 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccCc----
Confidence 8887 99999999997665 36999999999999987 5777888877765 333445799999988876521
Q ss_pred cCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 250 ~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.-= +.++...+.+.++.+.+++..+|..
T Consensus 146 ---------lVE-vv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 ---------LVE-VVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp ---------EEE-EEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred ---------eEE-EeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 222 5568889999999999999999853
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-07 Score=94.10 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=98.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCC---------CcCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~---------~~~~~~eav~~ADvV 182 (462)
|||+|||.|+||..+|..|.++ |++|.+..| . +..+...+.|+...+. ...+.+++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-P-KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-H-HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 888887777 3 3344555566542110 123455667899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEE-EEeccch-HHHhhhccccCCCCccEE------ecccCCCchhhHHhhhcCccc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~-i~~~~~~~i~~p~~v~VV------~v~Pngpg~~vr~lf~~G~~~ 254 (462)
|+++|..+..++++++.+++.++++| +...|+. ...+.. .+|++ .++ ......|+.....
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~---~~~~~-~v~~g~~~~~~~~~~~g~v~~~-------- 140 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP---YFGRE-RVLGGVVFISAQLNGDGVVVQR-------- 140 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH---hCCcc-cEEEEEEEEEEEECCCeEEEEc--------
Confidence 99999999999999999999888765 4667875 233332 33433 222 2333355555211
Q ss_pred cCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 255 ~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.|... +........+..+...+++...|..
T Consensus 141 -~~~~~~-iG~~~~~~~~~~~~l~~~l~~~g~~ 171 (305)
T PRK12921 141 -ADHRLT-FGEIPGQRSERTRAVRDALAGARLE 171 (305)
T ss_pred -CCCcEE-EcCCCCCcCHHHHHHHHHHHhCCCC
Confidence 122222 3332333345555666777777754
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=102.92 Aligned_cols=162 Identities=23% Similarity=0.231 Sum_probs=109.4
Q ss_pred cceeecCccccc-----ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec
Q 012479 91 EYIVRGGRDLFN-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (462)
Q Consensus 91 e~~~~~~~~~f~-----~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (462)
+.-+|.|.|... .....++| ||+||||+|.||.++|+.++.. |.+|+++.+... .+..++.++.
T Consensus 122 ~~~~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~~~~-- 190 (324)
T COG1052 122 DRRVREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKELGAR-- 190 (324)
T ss_pred HHHHhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhcCce--
Confidence 345677888665 44578999 9999999999999999999865 888877766533 3333344455
Q ss_pred CCCcCCHhhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec-cc------hHHHhhhccccCCCCccEEecc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GF------LLGHLQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~a~~-~vl~-eI~~~Lk~gaiL~~a~-G~------~i~~~~~~~i~~p~~v~VV~v~ 236 (462)
..+.+|++++||+|++.+|..... .++. +....||+|.+|+=++ |- .+.-+++.. .-....||.--.
T Consensus 191 ---y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~-i~gaglDV~e~E 266 (324)
T COG1052 191 ---YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGK-IAGAGLDVFENE 266 (324)
T ss_pred ---eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC-cceEEeeecCCC
Confidence 345999999999999999977664 5665 6888999999887444 42 123333322 223467888888
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHH
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e 275 (462)
|.-..+...++-. . -+.+++||. ..|.++++
T Consensus 267 p~~~d~~l~~l~~-------~-~~vvltPHia~at~ea~~ 298 (324)
T COG1052 267 PALFDHPLLRLDN-------F-PNVVLTPHIASATEEARK 298 (324)
T ss_pred CCCCChhHhhccC-------C-CCEEEccccccccHHHHH
Confidence 8654343322211 1 347788887 44544443
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-08 Score=102.68 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=102.7
Q ss_pred ceeecCcccccc----cccccCCCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC
Q 012479 92 YIVRGGRDLFNL----LPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (462)
Q Consensus 92 ~~~~~~~~~f~~----~~~~l~gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (462)
..+|+|+|.... ....|.| ++|||||+|++|..+|+.++ .. |.+|++.++... .+.....|..
T Consensus 123 ~~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~~~~~--- 190 (323)
T PRK15409 123 ERVKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEERFNAR--- 190 (323)
T ss_pred HHHHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHhcCcE---
Confidence 345778886421 2357999 99999999999999999997 44 888876554422 2223345655
Q ss_pred CCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEeccc
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCP 237 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~P 237 (462)
..+.+|++++||+|++++|-... ..++. +.+..||+|++++-++ |-. +..+++.. ......||..-.|
T Consensus 191 --~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~-i~gAaLDVf~~EP 267 (323)
T PRK15409 191 --YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGE-IHAAGLDVFEQEP 267 (323)
T ss_pred --ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCC-eeEEEeecCCCCC
Confidence 45899999999999999996555 45665 6888999999877443 421 22333211 1123467777777
Q ss_pred CCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHH
Q 012479 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 238 ngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e 275 (462)
-.+.+. ++. =-+++++||- ..+.++.+
T Consensus 268 ~~~~~p---L~~--------~~nvilTPHia~~t~e~~~ 295 (323)
T PRK15409 268 LSVDSP---LLS--------LPNVVAVPHIGSATHETRY 295 (323)
T ss_pred CCCCch---hhc--------CCCEEEcCcCCCCcHHHHH
Confidence 433332 232 2477888886 33444443
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-08 Score=112.50 Aligned_cols=135 Identities=13% Similarity=-0.029 Sum_probs=98.2
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCC-ccEEecccCCCchhhHHhhhcCccccCCCce
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~-v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ 260 (462)
||||+|+....++++++.|+++++++|+|+++++-...+.....++.+ .+||..||+. |.. ...|+...+++++|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMa-G~e-~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIA-GRE-SSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcC-cCc-chhhhhhChhHhCCCe
Confidence 699999999999999999999999999999999743222111133432 5799999972 322 1233334444455899
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHH
Q 012479 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF 324 (462)
Q Consensus 261 aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~ 324 (462)
+++|+.++.+.++++.+++++..+|+ +++.++.++|++.-.+ +|+.=|-+.-++.+.+
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga-~~~~~~~~~HD~~~A~-----iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARA-DVRAMSAEQHDRVFAA-----VSHLPHVLSFALVEQI 136 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHHHHH-----HhhHHHHHHHHHHHHH
Confidence 99999999999999999999999995 7899999999866433 3444444444444444
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.2e-08 Score=104.64 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=71.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
...|+| ++|||||+|+||.++|+.|+.. |.+|+++++....... .... ..+.++++++||+|++
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~~-----~~~~----~~~l~ell~~aDiVil 204 (330)
T PRK12480 141 SKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDLD-----FLTY----KDSVKEAIKDADIISL 204 (330)
T ss_pred ccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhhh-----hhhc----cCCHHHHHhcCCEEEE
Confidence 467999 9999999999999999999988 9998776654322111 1111 3578999999999999
Q ss_pred eecchhH-HHHHH-HHHhcCCCCcEEEEe-ccc
Q 012479 185 LISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGF 214 (462)
Q Consensus 185 avpd~a~-~~vl~-eI~~~Lk~gaiL~~a-~G~ 214 (462)
++|.... ..++. ++.+.||+|++|+.+ -|-
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 9997764 34454 788999999987644 454
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-07 Score=94.69 Aligned_cols=201 Identities=19% Similarity=0.263 Sum_probs=126.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--------CceecC--CCcCCHhhhhccCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD 180 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--------G~~~~d--~~~~~~~eav~~AD 180 (462)
++||+|||.|+-|.|+|+-|.++ |++|.+|.|+.+- .+.-... |+...+ ..+.|+++++++||
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~-~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEI-VAEINETRENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHH-HHHHHhcCcCccccCCccCCcccccccCHHHHHhcCC
Confidence 37999999999999999999999 9999888775321 1111111 221101 12568899999999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEE-EEeccch------HH-HhhhccccCCCCccEEecccCCCchhhHHhhhcCc
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL------LG-HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~------i~-~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~ 252 (462)
+|++++|-+.+.++++++.+++++++++ +.+-|+. +. .+++ .+|.+.-++.. ||.+. ++-
T Consensus 74 ~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLS---GPs~A--~EV---- 141 (329)
T COG0240 74 IIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLS---GPSFA--KEV---- 141 (329)
T ss_pred EEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEE---CccHH--HHH----
Confidence 9999999999999999999999998864 5666772 22 2333 34443333333 44444 222
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH--HHHHHHHHHHHcCCC
Q 012479 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IVESLFRRFTENGMN 330 (462)
Q Consensus 253 ~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa--liea~~d~~v~~G~~ 330 (462)
.+|.|+-+++... +.+..+.+..+|.. . +|.--+..|..|.+ ++|.+-- -|-+++--+...|-.
T Consensus 142 ---a~g~pta~~vas~-d~~~a~~v~~~f~~---~-----~Frvy~~~Dv~Gve--igGAlKNViAIA~Gi~dGlg~G~N 207 (329)
T COG0240 142 ---AQGLPTAVVVASN-DQEAAEKVQALFSS---P-----YFRVYTSTDVIGVE--IGGALKNVIAIAAGIADGLGLGDN 207 (329)
T ss_pred ---hcCCCcEEEEecC-CHHHHHHHHHHhCC---C-----cEEEEecCchhhhH--HHHHHHHHHHHHHHHHHHhhcChh
Confidence 2578887776653 33444444444443 3 23334456777776 7787774 334444445566666
Q ss_pred HHHHHH-HHHHHHHH
Q 012479 331 EDLAYK-NTVECITG 344 (462)
Q Consensus 331 ~e~A~~-~~~e~i~G 344 (462)
-.-|.. -++.+|.-
T Consensus 208 akaalitrGL~Em~r 222 (329)
T COG0240 208 AKAALITRGLAEMTR 222 (329)
T ss_pred HHHHHHHhHHHHHHH
Confidence 655554 45555553
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=102.09 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=102.7
Q ss_pred eecCccccccc-------ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC
Q 012479 94 VRGGRDLFNLL-------PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (462)
Q Consensus 94 ~~~~~~~f~~~-------~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (462)
+|+|+|..... ...|.| |+|||||+|++|..+|+.++.. |.+|+++++.... ...++.
T Consensus 122 ~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~~~~~~--- 186 (311)
T PRK08410 122 VKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----KNEEYE--- 186 (311)
T ss_pred HHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----cccCce---
Confidence 56778864321 257999 9999999999999999999876 8898766553211 123454
Q ss_pred CCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEE-Eeccch------HHHhhhccccCCCCccEEeccc
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~-~a~G~~------i~~~~~~~i~~p~~v~VV~v~P 237 (462)
..+.+|++++||+|++++|-... ..++. +.+..||||++|+ .+-|-. +..+++..+. ...||..-.|
T Consensus 187 --~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~--AaLDV~~~EP 262 (311)
T PRK08410 187 --RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY--AGLDVLEKEP 262 (311)
T ss_pred --eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE--EEEecCCCCC
Confidence 45899999999999999995544 45776 6888999999877 444531 2333332222 4567777777
Q ss_pred CCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 012479 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (462)
Q Consensus 238 ngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a 277 (462)
-.+.+. ++.-- .=-|.+++||- ..+.+..+.+
T Consensus 263 ~~~~~p---L~~~~-----~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 263 MEKNHP---LLSIK-----NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CCCCCh---hhccC-----CCCCEEECCccccCCHHHHHHH
Confidence 544433 22200 00267888886 3455555443
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=105.11 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=70.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHH-HHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~L-rds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
...|.| ++|||||+|+||.++|+.| +.. |.+|++.++..... ...++.. ..+.++++++||+|+
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~~~----~~~l~ell~~aDvIv 205 (332)
T PRK08605 141 SRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYVDY----KDTIEEAVEGADIVT 205 (332)
T ss_pred cceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhccc----cCCHHHHHHhCCEEE
Confidence 367999 9999999999999999999 444 77876654432221 1122331 358899999999999
Q ss_pred EeecchhHHHHH--HHHHhcCCCCcEEEEec-cc
Q 012479 184 LLISDAAQADNY--EKIFSCMKPNSILGLSH-GF 214 (462)
Q Consensus 184 Lavpd~a~~~vl--~eI~~~Lk~gaiL~~a~-G~ 214 (462)
+++|.......+ .+..+.||+|++|+.++ |.
T Consensus 206 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 206 LHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred EeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 999987776544 36788999999887554 43
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.8e-08 Score=97.24 Aligned_cols=97 Identities=26% Similarity=0.294 Sum_probs=73.0
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCC------------CcCCHhhhhcc
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG------------TLGDIYETISG 178 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~------------~~~~~~eav~~ 178 (462)
++||+|||.|.||.++|..|.++ |++|++..|. +..+...+.|+...+. ...+..++++.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA--RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALAT 73 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH--HHHHHHHhcCceeecCCCcceecccceeEeccChhhccC
Confidence 47899999999999999999999 9998887764 2234445556542110 01222356789
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~-~a~G~~ 215 (462)
+|+||+++|+....++++++.++++++++|+ ...|+.
T Consensus 74 ~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 74 ADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred CCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 9999999999999999999999999998764 556775
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.82 E-value=1e-08 Score=111.11 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=82.1
Q ss_pred eeecCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC
Q 012479 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (462)
Q Consensus 93 ~~~~~~~~f~~-~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (462)
-+|+|+|.... ....|.| |+|||||+|+||.++|+.|+.. |.+|+++++.. ..+.+.+.|+.. ..+
T Consensus 120 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~----~~~ 186 (525)
T TIGR01327 120 SLKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL----VDD 186 (525)
T ss_pred HHHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE----cCC
Confidence 35677886432 2367999 9999999999999999999987 98887665532 234455667653 357
Q ss_pred HhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 012479 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
.+|++++||+|++++|.... ..++. +.+..||+|++|+.++
T Consensus 187 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 187 LDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCA 229 (525)
T ss_pred HHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcC
Confidence 99999999999999997654 45664 6778999999887664
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.3e-08 Score=102.17 Aligned_cols=161 Identities=22% Similarity=0.183 Sum_probs=102.0
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC--------ceec
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------FTEE 165 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G--------~~~~ 165 (462)
+++|+|..+.. ..|.| ++|||||+|.||..+|+.|+.. |.+|++.++...+... ...+ +...
T Consensus 144 ~~~~~w~~~~~-~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~--~~~~~~~~~~~~~~~~ 213 (347)
T PLN02928 144 LKARRLGEPIG-DTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPE--DGLLIPNGDVDDLVDE 213 (347)
T ss_pred HHcCCcccccc-cCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhh--hhhccccccccccccc
Confidence 45677865333 67999 9999999999999999999977 9998776654221111 1000 0000
Q ss_pred CCCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~ 236 (462)
.....+.+|++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..++.. .......||....
T Consensus 214 ~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g-~i~gAaLDV~~~E 292 (347)
T PLN02928 214 KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG-HLGGLAIDVAWSE 292 (347)
T ss_pred cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC-CeeEEEEccCCCC
Confidence 01145889999999999999995544 45665 6888999999887554 431 2222321 1112356788777
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeeccC-CCHHHHHH
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd-~tgea~e~ 276 (462)
|--+.+. ++.. -+.+++||-. .+.+..+.
T Consensus 293 P~~~~~p---L~~~--------~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 293 PFDPDDP---ILKH--------PNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred CCCCCCh---hhcC--------CCEEECCcCCCChHHHHHH
Confidence 7443332 3332 4778888863 45454443
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-08 Score=103.40 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=96.3
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
.+.|+|..... ..++| +||||||+|+||..+|+.|+.. |++|+++.+...+ . .++.. -....+.+
T Consensus 121 ~~~~~w~~~~~-~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l~ 185 (312)
T PRK15469 121 QNSSHWQPLPE-YHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREELS 185 (312)
T ss_pred HHhCCcCCCCC-CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccHH
Confidence 45678864333 57899 9999999999999999999987 9988776654221 1 12221 00135789
Q ss_pred hhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhh
Q 012479 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 174 eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
+++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..+++..+ .....||..-.|--+.+
T Consensus 186 e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i-~gaalDVf~~EPl~~~~-- 262 (312)
T PRK15469 186 AFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKV-KGAMLDVFSREPLPPES-- 262 (312)
T ss_pred HHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCe-eeEEecCCCCCCCCCCC--
Confidence 999999999999996665 45666 6888999999887665 421 222332111 12235666666632222
Q ss_pred HHhhhcCccccCCCceEEEeeccC
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQD 268 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~qd 268 (462)
.++.. -+++++||-.
T Consensus 263 -pl~~~--------~nvi~TPHia 277 (312)
T PRK15469 263 -PLWQH--------PRVAITPHVA 277 (312)
T ss_pred -hhhcC--------CCeEECCcCC
Confidence 23331 4677888863
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-08 Score=109.33 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=81.9
Q ss_pred eecCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 012479 94 VRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (462)
Q Consensus 94 ~~~~~~~f~~-~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (462)
+|+|+|.... ....|.| |+|||||+|+||..+|+.|+.. |.+|+++++.. ..+.+...|+.. .+.
T Consensus 123 ~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~-----~~l 188 (526)
T PRK13581 123 LKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYI--SPERAAQLGVEL-----VSL 188 (526)
T ss_pred HHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE-----EcH
Confidence 4678886432 2357899 9999999999999999999988 99887666542 234455667763 489
Q ss_pred hhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 012479 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
+|++++||+|++++|.... ..++. +.+..||+|++|+.++
T Consensus 189 ~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 189 DELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred HHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECC
Confidence 9999999999999997655 45774 7889999999887654
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.7e-08 Score=98.12 Aligned_cols=159 Identities=17% Similarity=0.115 Sum_probs=100.5
Q ss_pred eecCcccccc-------cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC
Q 012479 94 VRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (462)
Q Consensus 94 ~~~~~~~f~~-------~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (462)
+++|+|.... ....|+| ++|||||+|.+|..+|+.++.. |.+|++..+.... .....
T Consensus 124 ~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~~~~~--- 187 (314)
T PRK06932 124 QLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------VCREG--- 187 (314)
T ss_pred HHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------ccccc---
Confidence 4567785321 2257999 9999999999999999999876 8888655432111 11111
Q ss_pred CCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEE-Eeccch------HHHhhhccccCCCCccEEeccc
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~-~a~G~~------i~~~~~~~i~~p~~v~VV~v~P 237 (462)
..+.+|++++||+|++++|-... ..++. +.+..||+|++|+ .+-|-. +..+++. .......||..-.|
T Consensus 188 --~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g-~i~gAaLDV~~~EP 264 (314)
T PRK06932 188 --YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENG-KIAGAALDVLVKEP 264 (314)
T ss_pred --cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC-CccEEEEecCCCCC
Confidence 34789999999999999995544 45775 6888999999877 444532 2233321 12123567887777
Q ss_pred CCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHHHH
Q 012479 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVAL 278 (462)
Q Consensus 238 ngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a~ 278 (462)
-.+.+...+.+.+ =-|.+++||- ..+.++.+...
T Consensus 265 ~~~~~pl~~~~~~-------~pnvilTPHia~~t~e~~~~~~ 299 (314)
T PRK06932 265 PEKDNPLIQAAKR-------LPNLLITPHIAWASDSAVTTLV 299 (314)
T ss_pred CCCCChhhHhhcC-------CCCEEECCccccCcHHHHHHHH
Confidence 5444332211111 1367788886 34555555443
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-08 Score=100.26 Aligned_cols=149 Identities=20% Similarity=0.189 Sum_probs=104.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
++|||||+|+||.+++.||.+. |+.|+|++|..++ .+..++.|..+ ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 7899999999999999999999 9999999887555 45556678875 67899999999999999998777
Q ss_pred H-HHHH---HHHhcCCCCcEE-EEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 192 A-DNYE---KIFSCMKPNSIL-GLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 192 ~-~vl~---eI~~~Lk~gaiL-~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+ ++|. .+...+++|... ++++-+.. ..+.+ .+. ..+..+|- +|-. |.. ..=+ +|.-.++
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~-~i~-~~~~~~vD-APVS-Gg~--~~A~-------~G~Ltim 171 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK-AIS-NKGGRFVD-APVS-GGV--KGAE-------EGTLTIM 171 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH-HHH-hCCCeEEe-cccc-CCc--hhhh-------cCeEEEE
Confidence 5 5665 366677788866 57765531 12221 112 23445553 3311 111 1111 4566655
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCC
Q 012479 264 AVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~ 287 (462)
+ . -+....+.+..+++.+|..
T Consensus 172 a-g--Gde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 172 A-G--GDEALFEAASPVFKLMGKN 192 (327)
T ss_pred e-c--CcHHHHHHHHHHHHHhcce
Confidence 5 3 3677888999999999954
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-06 Score=96.45 Aligned_cols=215 Identities=10% Similarity=0.112 Sum_probs=139.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceecC---------CC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~ 168 (462)
+.+++|+|||.|.||..||..+..+ |++|++.+...+ ..+. ..+.|..... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999998 999887766533 2222 2222321100 00
Q ss_pred cCCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhH
Q 012479 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr 245 (462)
..+. +.+++||+||=++|..... +++.++.++++++++| +-++++.+..+.+ .....-+|+..|+--|.+..+
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc
Confidence 2344 5679999999999976653 6999999999999987 4677788776654 223334799999988887621
Q ss_pred HhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH-HHHHHHHHHH
Q 012479 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-GIVESLFRRF 324 (462)
Q Consensus 246 ~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p-aliea~~d~~ 324 (462)
.-= |.++...+++.++.+.+++..+|..-++ + .+ .. +-+.+=+. +++. -+-.+
T Consensus 460 -------------lVE-vv~g~~T~~~~~~~~~~~~~~lgk~pv~-v---~d--~p-----Gfv~nRi~~~~~~-ea~~l 513 (715)
T PRK11730 460 -------------LVE-VIRGEKTSDETIATVVAYASKMGKTPIV-V---ND--CP-----GFFVNRVLFPYFA-GFSQL 513 (715)
T ss_pred -------------eEE-eeCCCCCCHHHHHHHHHHHHHhCCceEE-e---cC--cC-----chhHHHHHHHHHH-HHHHH
Confidence 222 4467888999999999999999965222 1 11 11 11222222 2222 23346
Q ss_pred HHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHh
Q 012479 325 TENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNS 361 (462)
Q Consensus 325 v~~G~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~~~ 361 (462)
++.|.++++-=...-+.+ .| --+++-..|++.+++.
T Consensus 514 v~~Ga~~e~ID~a~~~~~G~~~G-P~~~~D~~Gld~~~~~ 552 (715)
T PRK11730 514 LRDGADFRQIDKVMEKQFGWPMG-PAYLLDVVGIDTAHHA 552 (715)
T ss_pred HHcCCCHHHHHHHHHhhCCCccC-HHHHHHhhchHHHHHH
Confidence 888988876554322211 35 3456667777655543
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.7e-07 Score=100.80 Aligned_cols=212 Identities=11% Similarity=0.124 Sum_probs=136.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceecC---------CC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~ 168 (462)
..+++|+|||.|.||..||..+..+ |++|++.+...+ ..+. ..+.|-.... ..
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 405 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPA-GLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP 405 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 3458999999999999999999998 999887665432 2222 2222211000 00
Q ss_pred cCCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhH
Q 012479 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr 245 (462)
..+. +++++||+||=++|.+... +++.++.++++++++|. -++++.+..+.. .....-+|+..|+--|.+..+
T Consensus 406 ~~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m~ 481 (737)
T TIGR02441 406 TLDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKMQ 481 (737)
T ss_pred eCCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccCc
Confidence 2344 4679999999999976653 69999999999999874 667787776654 222334799999988887721
Q ss_pred HhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH-H-HHHHHHHH
Q 012479 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-G-IVESLFRR 323 (462)
Q Consensus 246 ~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p-a-liea~~d~ 323 (462)
.-= |..+...+++.++.+.+++..+|..-++ + .+ ..-| +.+=+. + +-|++ .
T Consensus 482 -------------LvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~-v---~d--~pGF-----i~NRi~~~~~~ea~--~ 534 (737)
T TIGR02441 482 -------------LLE-IITHDGTSKDTLASAVAVGLKQGKVVIV-V---KD--GPGF-----YTTRCLGPMLAEVI--R 534 (737)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHCCCeEEE-E---CC--cCCc-----hHHHHHHHHHHHHH--H
Confidence 122 4457788999999999999999965222 1 11 1111 222222 2 33333 4
Q ss_pred HHHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHH
Q 012479 324 FTENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYN 360 (462)
Q Consensus 324 ~v~~G~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~~ 360 (462)
+++.|+++++-=.. +..+ .| --.++-..|++.+++
T Consensus 535 lv~eGv~~~~ID~a-~~~~G~p~G-P~~l~D~vGld~~~~ 572 (737)
T TIGR02441 535 LLQEGVDPKKLDKL-TTKFGFPVG-AATLADEVGVDVAEH 572 (737)
T ss_pred HHHcCCCHHHHHHH-HHHcCCCCC-HHHHHHHhhHHHHHH
Confidence 78889988765552 2221 14 235666667654443
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.7e-07 Score=99.60 Aligned_cols=215 Identities=10% Similarity=0.074 Sum_probs=136.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCceecC---------CC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d---------~~ 168 (462)
+.+++|+|||.|.||..||..+..+ |++|++.+...+ ..+.+ .+.|-.... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3568999999999999999999999 999887765533 22221 122211000 00
Q ss_pred cCCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhH
Q 012479 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr 245 (462)
..+. +.+++||+||=++|.+... +++.++.+.++|+++|. -++++.+..+.. ..+..-+|+..|+--|.+..+
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccCc
Confidence 2344 5679999999999976653 69999999999999874 667777776654 223334799999988887721
Q ss_pred HhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHH
Q 012479 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (462)
Q Consensus 246 ~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v 325 (462)
.-= |.++...+++.++.+.+++..+|..-|+ + .+ .. +-+.+=+..-+-.-.-.++
T Consensus 460 -------------lvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~-v---~d--~p-----Gfi~NRl~~~~~~ea~~l~ 514 (714)
T TIGR02437 460 -------------LVE-VIRGEKSSDETIATVVAYASKMGKTPIV-V---ND--CP-----GFFVNRVLFPYFGGFSKLL 514 (714)
T ss_pred -------------eEe-ecCCCCCCHHHHHHHHHHHHHcCCEEEE-e---CC--cc-----cchHHHHHHHHHHHHHHHH
Confidence 112 4467788999999999999999965222 1 11 11 1122222221112233467
Q ss_pred HcCCCHHHHHHHHHHH---HHHHHHHHHHHhcHHHHHH
Q 012479 326 ENGMNEDLAYKNTVEC---ITGIISKIISTQGMLAVYN 360 (462)
Q Consensus 326 ~~G~~~e~A~~~~~e~---i~Gli~~li~e~G~~~m~~ 360 (462)
+.|.++++-=...-+. =.|+ -.++-..|++.+++
T Consensus 515 ~eG~~~~~ID~a~~~~~G~p~GP-f~l~D~~Gld~~~~ 551 (714)
T TIGR02437 515 RDGADFVRIDKVMEKQFGWPMGP-AYLLDVVGIDTGHH 551 (714)
T ss_pred HCCCCHHHHHHHHHhcCCCccCH-HHHHHhhhHHHHHH
Confidence 8898887654421111 1252 45666667755443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.6e-08 Score=84.01 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=58.1
Q ss_pred cccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 299 RSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 299 ~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
+++.|+..++++||+|+ +++++.+.+++.|+++++|.+++.|++.| .++|+.+++. ..+++.|+.+
T Consensus 2 ~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G-~a~ll~~~~~~~~~l~~~v~tP 73 (107)
T PF14748_consen 2 DEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIG-AAKLLEESGRSPAELRDEVTTP 73 (107)
T ss_dssp SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-HHHHHHHCSS-HHHHHHHHS-T
T ss_pred CHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHccCCCHHHHhhhccCC
Confidence 45688899999999998 89999999999999999999999999999 8999998885 9999999965
|
... |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=97.89 Aligned_cols=138 Identities=22% Similarity=0.256 Sum_probs=94.5
Q ss_pred ccccccceeecCccccccc---ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 012479 86 LADRDEYIVRGGRDLFNLL---PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 86 ~~~~~e~~~~~~~~~f~~~---~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (462)
|-+-.|. ++.|+|..... ...++| |+|+|+|+|++|..+|++|... |..+.+..|. ....+.+.+.+.
T Consensus 136 ~~~g~~~-~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 136 FSEGNEM-VRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYYA 206 (336)
T ss_pred hhhhhhh-hhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhcc
Confidence 4444443 55667722221 488999 9999999999999999999987 8444444443 444566666655
Q ss_pred eecCCCcCCHhhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEE-EeccchH------HHhhhccccCCCCccEE
Q 012479 163 TEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFLL------GHLQSMGLDFPKNIGVI 233 (462)
Q Consensus 163 ~~~d~~~~~~~eav~~ADvViLavpd~a~~-~vl~-eI~~~Lk~gaiL~-~a~G~~i------~~~~~~~i~~p~~v~VV 233 (462)
. ..+.+|.+.++|+|+++.|..... .++. ++..+||+|.+|+ .+=|--+ ..+.+ +.....+.||.
T Consensus 207 ~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s-G~i~~aGlDVf 280 (336)
T KOG0069|consen 207 E-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS-GKIAGAGLDVF 280 (336)
T ss_pred c-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc-CCccccccccc
Confidence 4 358999999999999999977764 5776 7999999999876 3334311 12222 22234567888
Q ss_pred ecccC
Q 012479 234 AVCPK 238 (462)
Q Consensus 234 ~v~Pn 238 (462)
--.|+
T Consensus 281 ~~EP~ 285 (336)
T KOG0069|consen 281 EPEPP 285 (336)
T ss_pred CCCCC
Confidence 88883
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-06 Score=92.26 Aligned_cols=201 Identities=13% Similarity=0.100 Sum_probs=113.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC------------CCcCCHhhhhccC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------GTLGDIYETISGS 179 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d------------~~~~~~~eav~~A 179 (462)
+||+|||+|.||..+|.+|.+ |++|++.++. +...+... .|..... -...+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~-~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVN-KKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCC-HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 799999999999999999764 6777655544 43344433 4432000 0123445678999
Q ss_pred CeEEEeecchh-------HHHH---HHHHHhcCCCCcEEEEeccc----hHH----Hhhh-ccccCCCCccEEeccc--C
Q 012479 180 DLVLLLISDAA-------QADN---YEKIFSCMKPNSILGLSHGF----LLG----HLQS-MGLDFPKNIGVIAVCP--K 238 (462)
Q Consensus 180 DvViLavpd~a-------~~~v---l~eI~~~Lk~gaiL~~a~G~----~i~----~~~~-~~i~~p~~v~VV~v~P--n 238 (462)
|+||+|+|... ...+ .+.|.+++++|++|++.+-+ .-. .+++ .++....+ .++...| -
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~-~~~~~~PE~v 156 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQD-FYVGYSPERI 156 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCC-eeEeeCCCcC
Confidence 99999999541 1233 34799999999988766533 211 1111 01121111 2333333 3
Q ss_pred CCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC-cccccchhhhccccchhhhHhHHhHHHHHH
Q 012479 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIV 317 (462)
Q Consensus 239 gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~-~viettf~~E~~~dlfgeqtvL~G~~pali 317 (462)
.+|....++.. .+- +.... +.+..+.+..+.+.+... .+..++. .+-+.-.+-+.+ +...--+++
T Consensus 157 ~~G~a~~~~~~---------~~r-iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~-~~AE~~Kl~~N~-~~av~Ia~~ 222 (425)
T PRK15182 157 NPGDKKHRLTN---------IKK-ITSGS--TAQIAELIDEVYQQIISAGTYKAESI-KVAEAAKVIENT-QRDLNIALV 222 (425)
T ss_pred CCCcccccccC---------CCe-EEECC--CHHHHHHHHHHHHHHhhcCcEEecCH-HHHHHHHHHHHH-HHHHHHHHH
Confidence 45555332221 333 33343 467778888999888632 2222222 222222222322 223333577
Q ss_pred HHHHHHHHHcCCCHHHHHH
Q 012479 318 ESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 318 ea~~d~~v~~G~~~e~A~~ 336 (462)
.-++..+-+.|++.++.+.
T Consensus 223 NE~a~lae~~GiD~~~v~~ 241 (425)
T PRK15182 223 NELAIIFNRLNIDTEAVLR 241 (425)
T ss_pred HHHHHHHHHhCcCHHHHHH
Confidence 7778888899999987765
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.2e-08 Score=88.86 Aligned_cols=123 Identities=17% Similarity=0.075 Sum_probs=78.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+++ ++|+|||+|.||.++++.|++. | .+|.+.+++..+..+.+.+.+.........+..++++++|+||+++
T Consensus 17 ~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 567 9999999999999999999987 6 4677777664444444555443100001456777889999999999
Q ss_pred cchhH-HHHHHHHHhcCCCCcEEEEeccchH--HHhhhccccCCCCccEEecccCCC
Q 012479 187 SDAAQ-ADNYEKIFSCMKPNSILGLSHGFLL--GHLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 187 pd~a~-~~vl~eI~~~Lk~gaiL~~a~G~~i--~~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
|+..+ .+-.......++++++|++++.... ...+. .-..++.+|..+|+-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~---~~~~g~~~v~g~~~~~ 143 (155)
T cd01065 90 PVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKE---ARALGAKTIDGLEMLV 143 (155)
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHH---HHHCCCceeCCHHHHH
Confidence 99886 1111101233688999888865432 11111 1123567777777543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.4e-08 Score=101.62 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=96.1
Q ss_pred eecCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 012479 94 VRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (462)
Q Consensus 94 ~~~~~~~f~~-~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (462)
+|+|+|.... ....|.| |+|||||+|++|..+|+.++.. |.+|+++++.. . ....++.. ..+.
T Consensus 134 ~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~-~----~~~~~~~~----~~~l 197 (409)
T PRK11790 134 AHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIED-K----LPLGNARQ----VGSL 197 (409)
T ss_pred HHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCc-c----cccCCcee----cCCH
Confidence 4668886432 2367999 9999999999999999999977 99987655431 1 11123332 4589
Q ss_pred hhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchh
Q 012479 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
+|++++||+|++++|.... ..++. +.+..||+|++|+-++ |-. +..+++..+ .....||.--.|-.+.+.
T Consensus 198 ~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i-~gaalDVf~~EP~~~~~~ 276 (409)
T PRK11790 198 EELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHL-AGAAIDVFPVEPKSNGDP 276 (409)
T ss_pred HHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCc-eEEEEcCCCCCCCCcccc
Confidence 9999999999999996554 55775 6888999999877444 431 223332111 123456666666432210
Q ss_pred h-HHhhhcCccccCCCceEEEeecc
Q 012479 244 V-RRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 244 v-r~lf~~G~~~~G~Gv~aliav~q 267 (462)
. ..++.. -+++++||-
T Consensus 277 ~~~pL~~~--------~nvilTPHi 293 (409)
T PRK11790 277 FESPLRGL--------DNVILTPHI 293 (409)
T ss_pred ccchhhcC--------CCEEECCcC
Confidence 0 113322 367788886
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-06 Score=95.81 Aligned_cols=214 Identities=13% Similarity=0.117 Sum_probs=134.9
Q ss_pred CCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCceecC---------CC
Q 012479 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d---------~~ 168 (462)
.+++|+|||.|.||..+|.-+. .+ |++|++.+...+ ..+.+ .+.|-.... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999886 57 999887665432 22222 122211000 01
Q ss_pred cCCHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhH
Q 012479 169 LGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr 245 (462)
..+. +++++||+||=++|.... .+++.++-++++++++|. -++++.+..+.+ .+...-+|+..|+--|.+..+
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2344 578999999999997765 369999999999999874 667788776655 222334799999988877621
Q ss_pred HhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-HHHHHHHHH
Q 012479 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRF 324 (462)
Q Consensus 246 ~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-liea~~d~~ 324 (462)
.-= |.++...+++.++.+.++++.+|..-++ + .+ ..-| +..=.+.. +.|++ .+
T Consensus 452 -------------lVE-vv~g~~T~~~~~~~~~~~~~~~gk~pv~-v---~d--~pGf----i~nRl~~~~~~Ea~--~l 505 (699)
T TIGR02440 452 -------------LVE-VIPHAGTSEQTIATTVALAKKQGKTPIV-V---AD--KAGF----YVNRILAPYMNEAA--RL 505 (699)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHcCCeEEE-E---cc--ccch----HHHHHHHHHHHHHH--HH
Confidence 222 4557788999999999999999965222 1 11 1111 11112222 33332 35
Q ss_pred HHcCCCHHHHHHHHH--HHHHHHHHHHHHHhcHHHHHHh
Q 012479 325 TENGMNEDLAYKNTV--ECITGIISKIISTQGMLAVYNS 361 (462)
Q Consensus 325 v~~G~~~e~A~~~~~--e~i~Gli~~li~e~G~~~m~~~ 361 (462)
++.|.++++-=...- ..-.| .-.++-..|++.+++.
T Consensus 506 ~~~G~~~~dID~a~~~~G~p~G-Pf~l~D~vGld~~~~i 543 (699)
T TIGR02440 506 LLEGEPVEHIDKALVKFGFPVG-PITLLDEVGIDVGAKI 543 (699)
T ss_pred HHCCCCHHHHHHHHHHcCCCcC-HHHHHHHhchHHHHHH
Confidence 678888766544321 11125 3456666677555443
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.2e-08 Score=97.98 Aligned_cols=156 Identities=21% Similarity=0.146 Sum_probs=100.4
Q ss_pred eeecCcccccc-------cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec
Q 012479 93 IVRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (462)
Q Consensus 93 ~~~~~~~~f~~-------~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (462)
-+|+|+|.... ....|.| ++|||||+|++|..+|+.++.. |.+|+++++.... ....
T Consensus 124 ~~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~-- 187 (317)
T PRK06487 124 AVAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD-- 187 (317)
T ss_pred HHHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc--
Confidence 34678886432 1247999 9999999999999999999876 8888766543211 1122
Q ss_pred CCCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEe-ccch------HHHhhhccccCCCCccEEecc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a-~G~~------i~~~~~~~i~~p~~v~VV~v~ 236 (462)
..+.+|++++||+|++++|-... ..++. +.+..||+|++|+-+ -|-. +..+++ +.......||.-..
T Consensus 188 ---~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~E 263 (317)
T PRK06487 188 ---RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAATDVLSVE 263 (317)
T ss_pred ---ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCCC
Confidence 34789999999999999996544 45776 688899999987744 3531 223332 12222356788777
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a 277 (462)
|-.+.+. ++... =-+.+++||- ..+.+..+.+
T Consensus 264 P~~~~~p---l~~~~------~pnvilTPHia~~t~e~~~~~ 296 (317)
T PRK06487 264 PPVNGNP---LLAPD------IPRLIVTPHSAWGSREARQRI 296 (317)
T ss_pred CCCCCCc---hhhcC------CCCEEECCccccCCHHHHHHH
Confidence 7543332 33200 0367788886 3344544433
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-06 Score=88.28 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=109.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCceecCC---------CcCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEENG---------TLGD 171 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~d~---------~~~~ 171 (462)
++||+|||.|.||+.+|..+... |++|++.+.+.. ++.++..+.|-..++. ...+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 58999999999999999999887 899888776522 2223333334221110 0122
Q ss_pred HhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
+. ++++||+||=+++-..- .+++.++-.+.+|+++| +-.+++.+..+.+. ..-| -+|+..|+--|.+.
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~-~~rp--er~iG~HFfNP~~~----- 147 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEA-LKRP--ERFIGLHFFNPVPL----- 147 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHH-hCCc--hhEEEEeccCCCCc-----
Confidence 22 78999999999995544 46999999999999998 57788887666542 2323 36999999888877
Q ss_pred hcCccccCCCceEE-EeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 249 ~~G~~~~G~Gv~al-iav~qd~tgea~e~a~al~~aiG~~ 287 (462)
|+.+ +......+++.++.+.+++..+|.+
T Consensus 148 ----------m~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 148 ----------MPLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred ----------ceeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3331 3346677889999999999999943
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-06 Score=84.45 Aligned_cols=199 Identities=16% Similarity=0.190 Sum_probs=139.7
Q ss_pred HcCceecCCCcCCHhhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEe
Q 012479 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIA 234 (462)
Q Consensus 159 ~~G~~~~d~~~~~~~eav~~ADvViLavpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~ 234 (462)
+.|+.+ +.|..|+++++|++|+=+|-.. +.+++++|.+++++|++|+.++=++ +.++-+ ... ++|+.|..
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE-~l~-R~DvgVsS 197 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFE-DLG-REDLNVTS 197 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHH-hhC-cccCCeec
Confidence 578876 6788899999999999999776 7899999999999999998777653 212211 122 58999999
Q ss_pred cccCC-CchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC-cccccchhhhccccchhhhHhHHhH
Q 012479 235 VCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGA 312 (462)
Q Consensus 235 v~Png-pg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~-~viettf~~E~~~dlfgeqtvL~G~ 312 (462)
.||-+ |+.. |--+ + ...-+++++.+....|.+..|.. +++ ..|+.+..+-+|-.
T Consensus 198 ~HPaaVPgt~--------------~q~Y-i-~egyAtEEqI~klveL~~sa~k~ay~~--------PA~LvspV~DMgS~ 253 (340)
T TIGR01723 198 YHPGCVPEMK--------------GQVY-I-AEGYASEEAVNKLYELGKKARGKAFKM--------PANLLGPVCDMCSA 253 (340)
T ss_pred cCCCCCCCCC--------------CceE-e-ecccCCHHHHHHHHHHHHHhCCCeeec--------chhhccchhhHHHH
Confidence 99953 3222 2222 3 36778999999999999999975 222 33355555555445
Q ss_pred HHH----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHHHHHH
Q 012479 313 VHG----IVESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387 (462)
Q Consensus 313 ~pa----liea~~d~~v~-~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~~m~e 387 (462)
+.+ .+..-++..++ .|-|.+++-..+.++++. ++.|+.++|+..|.+.+.. .+--|.+-|--+.|..+++..
T Consensus 254 VTAv~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~t-masLme~~GI~gm~~aLnP--eaL~~tAdSM~~~~~q~~L~~ 330 (340)
T TIGR01723 254 VTAIVYAGLLAYRDAVTKILGAPADFAQMMADEALTQ-IHNLMEEKGIDKMEEALDP--AALLGTADSMNFGPLADILPT 330 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcCH--HHHhhhhhhcccchHHHHHHH
Confidence 554 44455566655 599999999999999995 9999999999999999874 332333222223444444444
Q ss_pred HHH
Q 012479 388 CYE 390 (462)
Q Consensus 388 ~~~ 390 (462)
.|+
T Consensus 331 aL~ 333 (340)
T TIGR01723 331 ALE 333 (340)
T ss_pred HHH
Confidence 443
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3e-06 Score=84.68 Aligned_cols=176 Identities=17% Similarity=0.200 Sum_probs=130.4
Q ss_pred HHcCceecCCCcCCHhhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEE
Q 012479 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVI 233 (462)
Q Consensus 158 ~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV 233 (462)
++.|+.+ +.|..|+++++|++|+=+|-.. +.+++++|.+++++|++|+.++=++ +.++-+ ... ++|+.|.
T Consensus 125 EdaGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le-~l~-R~DvgIs 198 (342)
T PRK00961 125 EDLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFK-DLG-RDDLNVT 198 (342)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHH-HhC-cccCCee
Confidence 3468876 6788899999999999999776 7899999999999999998777553 222211 122 6899999
Q ss_pred ecccCC-CchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC-cccccchhhhccccchhhhHhHHh
Q 012479 234 AVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLG 311 (462)
Q Consensus 234 ~v~Png-pg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~-~viettf~~E~~~dlfgeqtvL~G 311 (462)
..||-+ |+.. |-.. ++ ..-+++++.+....|.+..|.. +++ ..|+.+..+-+|-
T Consensus 199 S~HPaaVPgt~--------------Gq~~-i~-egyAtEEqI~klveL~~sa~k~ay~~--------PA~lvspV~DMgS 254 (342)
T PRK00961 199 SYHPGAVPEMK--------------GQVY-IA-EGYADEEAVEKLYEIGKKARGNAFKM--------PANLIGPVCDMCS 254 (342)
T ss_pred ccCCCCCCCCC--------------Ccee-cc-cccCCHHHHHHHHHHHHHhCCCeeec--------chhhcchhhhHHH
Confidence 999953 3322 2222 22 4567999999999999999975 222 2345555555544
Q ss_pred HHHH----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCC
Q 012479 312 AVHG----IVESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364 (462)
Q Consensus 312 ~~pa----liea~~d~~v~-~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~ 364 (462)
.+.+ -+..-++..++ .|-|.+++-..+.+++.. ++.|+.++|+..|.+.+..
T Consensus 255 ~VTAv~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~t-masLme~~GI~gm~~aLnP 311 (342)
T PRK00961 255 AVTAIVYAGILAYRDAVTQILGAPADFAQMMADEALTQ-ITALMREEGIDNMEEALDP 311 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHhHHHHhcCH
Confidence 5554 44455566665 599999999999999985 8999999999999999874
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-06 Score=96.13 Aligned_cols=214 Identities=11% Similarity=0.137 Sum_probs=135.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCceecC---------C
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------G 167 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d---------~ 167 (462)
+.+++|+|||.|.||..+|..+. .. |++|++.+...+ ..+.+ .+.|-.... .
T Consensus 307 ~~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 379 (708)
T PRK11154 307 RPVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALIS 379 (708)
T ss_pred CcccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEE
Confidence 34689999999999999999987 77 999887665432 22222 222211000 0
Q ss_pred CcCCHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhh
Q 012479 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 168 ~~~~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
.+.+. +++++||+||=++|.... .+++.++.++++|+++|. -++++.+..+.+ .....-+|+.+|+=.|.+..
T Consensus 380 ~~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~ 455 (708)
T PRK11154 380 GTTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKM 455 (708)
T ss_pred EeCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccC
Confidence 02334 578999999999997665 469999999999999874 667777777655 22333479999998888762
Q ss_pred HHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHh-HHHHHHHHHHHH
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRR 323 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G-~~paliea~~d~ 323 (462)
+ .-= |.++...+++.++.+.+++..+|...++ . .+ .. +-+.+ .+.+++...+ .
T Consensus 456 ~-------------lVE-vv~g~~Ts~~~~~~~~~~~~~~gk~pv~-v---~d--~p-----Gfi~nRl~~~~~~EA~-~ 509 (708)
T PRK11154 456 P-------------LVE-VIPHAKTSAETIATTVALAKKQGKTPIV-V---RD--GA-----GFYVNRILAPYINEAA-R 509 (708)
T ss_pred c-------------eEE-EECCCCCCHHHHHHHHHHHHHcCCceEE-E---ec--cC-----cHHHHHHHHHHHHHHH-H
Confidence 1 222 5568889999999999999999975222 1 11 11 11222 2223333333 4
Q ss_pred HHHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHh
Q 012479 324 FTENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNS 361 (462)
Q Consensus 324 ~v~~G~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~~~ 361 (462)
+++.|+++++-=.. +..+ .| --.++-..|++.+++.
T Consensus 510 lv~eGv~~~dID~a-~~~~G~p~G-Pf~~~D~~Gld~~~~i 548 (708)
T PRK11154 510 LLLEGEPIEHIDAA-LVKFGFPVG-PITLLDEVGIDVGTKI 548 (708)
T ss_pred HHHcCCCHHHHHHH-HHHcCCCCC-HHHHHHHhhhHHHHHH
Confidence 67788887654332 2211 14 3455666676554443
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.2e-06 Score=85.57 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=97.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--CCC-------cCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~-------~~~~~eav~~ADvV 182 (462)
++|+|||.|.||..+|..|.++ |++|.+..|.. .+.-.+.|+... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7999999999999999999999 99988887753 233344565421 110 11223356789999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEE-EEeccchH-HHhhhccccCCCCccEEe------cccCCCchhhHHhhhcCccc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEI 254 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~i-~~~~~~~i~~p~~v~VV~------v~Pngpg~~vr~lf~~G~~~ 254 (462)
|++||-.+..++++.+.+.++++.+| .+.-|+.. ..+.+ .+|+. +|+. ....+|+... +.
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---~~----- 144 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---HL----- 144 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---EC-----
Confidence 99999998889999999999888754 56668753 23333 33443 3332 3444555541 11
Q ss_pred cCCCceEEEeeccCCC-----HHHHHHHHHHHHHhCCC
Q 012479 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSP 287 (462)
Q Consensus 255 ~G~Gv~aliav~qd~t-----gea~e~a~al~~aiG~~ 287 (462)
|.|... +......+ .+.++...++++..|..
T Consensus 145 -~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~ 180 (313)
T PRK06249 145 -AYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGID 180 (313)
T ss_pred -CCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCC
Confidence 234433 43333222 35566667788888865
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.6e-07 Score=91.09 Aligned_cols=160 Identities=20% Similarity=0.166 Sum_probs=114.3
Q ss_pred ccccceeecCccccccc-ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC
Q 012479 88 DRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (462)
Q Consensus 88 ~~~e~~~~~~~~~f~~~-~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (462)
++----++.|+|.+... .-.+.| |++||||+|.+|.-+|..++.- |..++..+.. ...+++++.|+.
T Consensus 123 ~~A~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi--~~~~~~~a~gvq--- 190 (406)
T KOG0068|consen 123 GQASASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPI--TPMALAEAFGVQ--- 190 (406)
T ss_pred chhheeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCC--CchHHHHhccce---
Confidence 33444578899988766 789999 9999999999999999999987 8887655544 346788889998
Q ss_pred CCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec--cc-----hHHHhhhccccCCCCccEEeccc
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH--GF-----LLGHLQSMGLDFPKNIGVIAVCP 237 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~--G~-----~i~~~~~~~i~~p~~v~VV~v~P 237 (462)
..+.+|+++.||.|-|.+|-... ..++. +-+..||+|..|+-++ |+ .+.-++. +..-..-+||.-..|
T Consensus 191 --~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~Ep 267 (406)
T KOG0068|consen 191 --LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEEP 267 (406)
T ss_pred --eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCCC
Confidence 57999999999999999996554 45665 5777899999776443 43 1223332 223344578888888
Q ss_pred CCCchhhHHhhhcCccccCCCceEEEeeccCCCH
Q 012479 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (462)
Q Consensus 238 ngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tg 271 (462)
...+.. ++| .+ =-+.+.+||+..+-
T Consensus 268 p~~~~~-~~L-v~-------hpnVi~TpHlgasT 292 (406)
T KOG0068|consen 268 PKNGWD-SEL-VS-------HPNVIVTPHLGAST 292 (406)
T ss_pred Cccchh-HHH-hc-------CCceeecCccccch
Confidence 665422 222 22 14667889986654
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.4e-06 Score=90.41 Aligned_cols=139 Identities=14% Similarity=0.042 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----CceecCCCcCCHhhhhcc---CCeEEEeecchhH-HH
Q 012479 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQ-AD 193 (462)
Q Consensus 122 mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~eav~~---ADvViLavpd~a~-~~ 193 (462)
||.++|+||.++ |++|.+++|..++..+..... |+.. ..+++|+++. +|+||+++|+..+ .+
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999988766655555432 4554 6789998875 8999999998766 56
Q ss_pred HHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCC
Q 012479 194 NYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (462)
Q Consensus 194 vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~t 270 (462)
|++++.|+|.+|.+|++.+-... ....+ ..-.+++.+|. +|-.-|.. .=+ .|- + +-+.. +
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvd-apVSGG~~---gA~-------~G~-s-iM~GG--~ 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIG-MGVSGGEE---GAL-------HGP-S-IMPGG--Q 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEe-cCCCCCHH---HHh-------cCC-E-EEEeC--C
Confidence 88899999999999998874321 11111 11135677664 34211211 001 354 4 34565 5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 012479 271 GRATNVALGWSVALGSP 287 (462)
Q Consensus 271 gea~e~a~al~~aiG~~ 287 (462)
.++.+.++-+++.+|..
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 78999999999999963
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.6e-06 Score=86.94 Aligned_cols=195 Identities=11% Similarity=0.071 Sum_probs=104.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH----------------cCceecCCCcCCHhhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~d~~~~~~~ea 175 (462)
|||+|||+|.||..+|..+. . |++|++.++. ....+...+ .+.... ...+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~------G~~VigvD~d-~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~--~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q------NHEVVALDIL-PSRVAMLNDRISPIVDKEIQQFLQSDKIHFN--ATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h------CCcEEEEECC-HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEE--Eecchhhh
Confidence 58999999999999996554 6 8887655544 433444332 111110 02346788
Q ss_pred hccCCeEEEeecch-----------hHHHHHHHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccC--C
Q 012479 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPK--G 239 (462)
Q Consensus 176 v~~ADvViLavpd~-----------a~~~vl~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pn--g 239 (462)
+++||+||+++|.. ...+++++|.+ +++|++|++.+-+... .+.. .+ .+.. +...|- -
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~---~~-~~~~-v~~~PE~l~ 144 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHK---KY-RTEN-IIFSPEFLR 144 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHH---Hh-hcCc-EEECccccc
Confidence 89999999999954 44567788877 6999988765543221 2221 11 1112 333453 3
Q ss_pred CchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHH--hCCCcc-cccchhhhccccchhhhHhHHhHHHHH
Q 012479 240 MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA--LGSPFT-FATTLEQEYRSDIFGERGILLGAVHGI 316 (462)
Q Consensus 240 pg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~a--iG~~~v-iettf~~E~~~dlfgeqtvL~G~~pal 316 (462)
+|..+.+.+. .+-++. .. +.+..+.+..++.. ++.... +.++. .+-+.-.+-+.+.+ ..--++
T Consensus 145 ~G~a~~d~~~---------p~rvv~-G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~AE~~Kl~~N~~~-a~~Ia~ 210 (388)
T PRK15057 145 EGKALYDNLH---------PSRIVI-GE--RSERAERFAALLQEGAIKQNIPTLFTDS-TEAEAIKLFANTYL-AMRVAY 210 (388)
T ss_pred CCcccccccC---------CCEEEE-Ec--CcHHHHHHHHHHHhhhhcCCCceeeCCH-HHHHHHHHHHHHHH-HHHHHH
Confidence 3444333332 334332 32 23445556666644 453211 22322 22222223233222 222246
Q ss_pred HHHHHHHHHHcCCCHHHHHH
Q 012479 317 VESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 317 iea~~d~~v~~G~~~e~A~~ 336 (462)
+.-+...+-+.|++.++...
T Consensus 211 ~NE~a~lae~~GiD~~eV~~ 230 (388)
T PRK15057 211 FNELDSYAESLGLNTRQIIE 230 (388)
T ss_pred HHHHHHHHHHhCcCHHHHHH
Confidence 66677777778888866554
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-07 Score=95.43 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=94.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..|+| ++|||||+|+||..+|+.|+.. |++|+++++.... ...... ..+.++++++||+|+++
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~~-----~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEGD-----FRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccccc-----cCCHHHHHhhCCEEEEe
Confidence 36889 9999999999999999999987 9998766532111 111111 45899999999999999
Q ss_pred ecchh-----HHHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCc
Q 012479 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (462)
Q Consensus 186 vpd~a-----~~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~ 252 (462)
+|-.. ...++. +.+..||+|++|+-++ |-. +..+++ +-....-.||.--.|. +... ++..
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~-~~~~---Ll~~-- 247 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPE-LNVE---LLKK-- 247 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCC-Cchh---hhhc--
Confidence 99544 345665 6888999999988554 421 222222 1111223567767774 2222 3321
Q ss_pred cccCCCceEEEeecc-CCCHHHHH-----HHHHHHHHhCC
Q 012479 253 EINGAGINSSFAVHQ-DVDGRATN-----VALGWSVALGS 286 (462)
Q Consensus 253 ~~~G~Gv~aliav~q-d~tgea~e-----~a~al~~aiG~ 286 (462)
.+ +++||- ..+.+... .+..+..-+|.
T Consensus 248 ------~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~ 280 (378)
T PRK15438 248 ------VD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIGH 280 (378)
T ss_pred ------CC-EECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence 23 678875 34544444 33445455553
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.2e-07 Score=82.78 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=67.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
-.+.| |++.|+|||..|..+|+.||.. |.+|+|.... +-..-+|..+||. +.+.+|+++++|+||.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~D-Pi~alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEID-PIRALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SS-HHHHHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECC-hHHHHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 45778 9999999999999999999998 9999887665 4445667779998 46899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|-...+. -.+.++.||+|++|..++.|.
T Consensus 86 TG~~~vi--~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDVI--TGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSSB---HHHHHHS-TTEEEEESSSST
T ss_pred CCCcccc--CHHHHHHhcCCeEEeccCcCc
Confidence 9875431 125667799999998887774
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=5e-07 Score=94.67 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=91.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... . .+... ..+.+|++++||+|+++
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~~----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDGD----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCcc----ccCHHHHHhhCCEEEEe
Confidence 46789 9999999999999999999988 9998766543211 1 12121 45899999999999999
Q ss_pred ecchh-----HHHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCc
Q 012479 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (462)
Q Consensus 186 vpd~a-----~~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~ 252 (462)
+|... ...++. +.+..||+|++|+-++ |-. +..+++ +.....-.||..-.|. +.+. +..
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~-g~i~~a~LDV~e~EP~-~~~~---L~~--- 246 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS-GEDLDAVLDVWEGEPQ-IDLE---LAD--- 246 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCCCCCCC-CChh---hhh---
Confidence 99653 445665 6888899999887554 421 122222 1111224567766774 2222 222
Q ss_pred cccCCCceEEEeecc-CCCHHHHH
Q 012479 253 EINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 253 ~~~G~Gv~aliav~q-d~tgea~e 275 (462)
.+.+++||- ..+.+..+
T Consensus 247 ------~nvi~TPHiAg~s~e~~~ 264 (381)
T PRK00257 247 ------LCTIATPHIAGYSLDGKA 264 (381)
T ss_pred ------CCEEEcCccccCCHHHHH
Confidence 477888886 34555443
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.4e-07 Score=92.75 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=91.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCchhHHH-HHHcCc-------eecC-CCcCCHhhh
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGF-------TEEN-GTLGDIYET 175 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~~s~~~-A~~~G~-------~~~d-~~~~~~~ea 175 (462)
..+.| ++|||||+|.+|..+|+.|+ .. |.+|++.++........ ....|. ...+ ....+.+|+
T Consensus 161 ~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~el 233 (386)
T PLN02306 161 NLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEV 233 (386)
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHH
Confidence 57999 99999999999999999986 44 88887665542211111 011221 0000 013478999
Q ss_pred hccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhhHH
Q 012479 176 ISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (462)
Q Consensus 176 v~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~ 246 (462)
+++||+|++++|-... ..++. +.+..||+|++|+-++ |-. +..+++.. ......||.--.|- +.+ .
T Consensus 234 l~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~-i~gAaLDVf~~EP~-~~~---~ 308 (386)
T PLN02306 234 LREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANP-MFRVGLDVFEDEPY-MKP---G 308 (386)
T ss_pred HhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC-eeEEEEeCCCCCCC-Ccc---h
Confidence 9999999999995544 45776 6888999999887554 421 22333211 11234677766773 222 2
Q ss_pred hhhcCccccCCCceEEEeecc-CCCHHHHH
Q 012479 247 LYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 247 lf~~G~~~~G~Gv~aliav~q-d~tgea~e 275 (462)
++.. -+.+++||- ..+.+..+
T Consensus 309 L~~~--------pNVilTPHiag~T~e~~~ 330 (386)
T PLN02306 309 LADM--------KNAVVVPHIASASKWTRE 330 (386)
T ss_pred HhhC--------CCEEECCccccCcHHHHH
Confidence 3332 377888886 34444443
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.6e-06 Score=81.12 Aligned_cols=146 Identities=20% Similarity=0.176 Sum_probs=106.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh---ccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI---SGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav---~~ADvViLavpd 188 (462)
|+|+.||+|.||..+.++|.+. |++++ +++.+....+.+..+|... ..+++|.+ ...-+|-+.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV-~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVV-GYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEE-EEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 99875 5556677788888899764 55666654 456899999998
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEeccch----HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 189 A-AQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 189 ~-a~~~vl~eI~~~Lk~gaiL~~a~G~~----i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
. ....++++++|+|.+|.+|++-+--+ +....+ ...++++++-+=-.|-..-.+ +|...
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~---l~~kgi~flD~GTSGG~~G~~-----------~G~~l-- 133 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKL---LAEKGIHFLDVGTSGGVWGAE-----------RGYCL-- 133 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHH---HHhcCCeEEeccCCCCchhhh-----------cCceE--
Confidence 8 44679999999999999998876432 222222 335788888655443211111 23433
Q ss_pred eeccCCCHHHHHHHHHHHHHhCC
Q 012479 264 AVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~ 286 (462)
-+.. +.++.+...-+|+++--
T Consensus 134 MiGG--~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 134 MIGG--DEEAVERLEPIFKALAP 154 (300)
T ss_pred EecC--cHHHHHHHHHHHHhhCc
Confidence 3344 67999999999999863
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=88.55 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=72.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..++| ++|+|||+|.+|.++|+.|+.. |.+|++..|+..+ .+.+.+.|.... ...+..+.++++|+||++
T Consensus 147 ~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 147 FTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF--PLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee--cHHHHHHHhccCCEEEEC
Confidence 46789 9999999999999999999988 8898888876433 444555666521 123567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+|...+. ++..+.|+++.+|++.+.
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 9975321 346677899998887764
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-06 Score=92.50 Aligned_cols=120 Identities=20% Similarity=0.219 Sum_probs=86.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...|...|+. +.+.+++++.+|+|+++
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 46889 9999999999999999999988 8888776654333 3345567886 45789999999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccchHHH-hhhccccCCCCccEEecccCCCchh
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~i~~-~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
+.. ..++. +....||+|++|+.++-+.... +.. +....++++..+.|+.....
T Consensus 317 tGt---~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~a--L~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 317 TGN---KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAE--LEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred CCc---ccccCHHHHhccCCCcEEEEcCCCchHHhHHH--HHhcCCceeecccCCCCeEE
Confidence 753 44665 6888899999988665443111 110 11112577888888765444
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-05 Score=84.35 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=116.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-------------------ceecCCCcCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------------------FTEENGTLGD 171 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-------------------~~~~d~~~~~ 171 (462)
+|||+|||+|.+|..+|..|.+. |.|++|+ +.+.++...+.-.+.+ +.. +.+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~-gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~----t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVV-VVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF----STD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEE-EEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE----EcC
Confidence 48999999999999999999877 2246665 4444443333321111 111 345
Q ss_pred HhhhhccCCeEEEeec-ch--------------hHHHHHHHHHhcCCCCcEEEEec----cchHHHhhhccccCCCCcc-
Q 012479 172 IYETISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLGHLQSMGLDFPKNIG- 231 (462)
Q Consensus 172 ~~eav~~ADvViLavp-d~--------------a~~~vl~eI~~~Lk~gaiL~~a~----G~~i~~~~~~~i~~p~~v~- 231 (462)
..+++++||++|+||| |. .+..+.++|.+++++|++|+.-+ |..- .+......-.++.+
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~-~~~~~l~~~~~g~~f 150 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSKGINF 150 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH-HHHHHHHhhCCCCCe
Confidence 6788999999999996 22 34567778999999999876443 4431 11110000011233
Q ss_pred EEecccC--CCchhhHHhhhcCccccCCCceEEE-eeccC-CCHHHHHHHHHHHHHhCC-Ccccccchhhhccccchhhh
Q 012479 232 VIAVCPK--GMGPSVRRLYVQGKEINGAGINSSF-AVHQD-VDGRATNVALGWSVALGS-PFTFATTLEQEYRSDIFGER 306 (462)
Q Consensus 232 VV~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~ali-av~qd-~tgea~e~a~al~~aiG~-~~viettf~~E~~~dlfgeq 306 (462)
.|...|- .||..+++++. .+-++ ....+ ...++.+.++++...+-. ..++.|+. ++-+.-.+
T Consensus 151 ~v~~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~-~~AE~~K~--- 217 (473)
T PLN02353 151 QILSNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNL-WSAELSKL--- 217 (473)
T ss_pred EEEECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCH-HHHHHHHH---
Confidence 3556664 56777665554 45543 22212 225678888888888742 23444443 33333222
Q ss_pred HhHHhHHH----HHHHHHHHHHHHcCCCHHHHH
Q 012479 307 GILLGAVH----GIVESLFRRFTENGMNEDLAY 335 (462)
Q Consensus 307 tvL~G~~p----aliea~~d~~v~~G~~~e~A~ 335 (462)
..++.- +|+..+.+.+-+.|++..+..
T Consensus 218 --~eN~~ra~~Iaf~NEla~lce~~giD~~eV~ 248 (473)
T PLN02353 218 --AANAFLAQRISSVNAMSALCEATGADVSQVS 248 (473)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 233333 477777777777787775544
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.2e-06 Score=83.30 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=63.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
|+||||||+|.||..++.+|.+. +.+++++...+.+. +..+.+...|... +.+.+++++++|+|++|+|++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 47999999999999999999875 11245443344433 3333444455543 568888889999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecc
Q 012479 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~ga-iL~~a~G 213 (462)
.+.++..++.. .|+ +++.+.|
T Consensus 73 ~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 73 AVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred HHHHHHHHHHH---cCCCEEEEchH
Confidence 99888776544 344 4444443
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.4e-06 Score=79.89 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=59.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC--------------C---CcCCHhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--------------G---TLGDIYE 174 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d--------------~---~~~~~~e 174 (462)
|||+|||+|-+|..+|..|.++ |++|+ |.+.+++..+.. ..|...-. + ...+..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~~l-~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVEAL-NNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHHHH-HTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHHHH-hhccccccccchhhhhccccccccchhhhhhhh
Confidence 7999999999999999999999 99874 666655433332 22321100 0 1456788
Q ss_pred hhccCCeEEEeecch----------hHHHHHHHHHhcCCCCcEEEEec
Q 012479 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 175 av~~ADvViLavpd~----------a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++++||++|+|+|.. ....++++|.++++++++|++-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 899999999999832 23557778999999999887655
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.24 E-value=6e-06 Score=87.26 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...|...|+. +.+.+++++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~r-~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChhh-HHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4788 9999999999999999999988 8898876654433 5667778986 456788999999999988
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~ 215 (462)
.. ..++. +....||+|.+|+.++.+.
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 64 45565 5788899999988776553
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.4e-05 Score=76.71 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=98.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCC--------cCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~--------~~~~~eav~~ADvVi 183 (462)
|||.|||.|.||.-++..|.+. |.+|.+..|. +..+.-++.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~--~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRS--RRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecH--HHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 8667666664 33566666687543211 112235566899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEE-EEeccch-HHHhhhccccCCCCccEEe-ccc-----CCCchhhHHhhhcCcccc
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSMGLDFPKNIGVIA-VCP-----KGMGPSVRRLYVQGKEIN 255 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~-i~~~~~~~i~~p~~v~VV~-v~P-----ngpg~~vr~lf~~G~~~~ 255 (462)
++++-.+..++++.+.|++++.+.| .+--|.. .+.+.+ .+|.. ++++ +.+ ++|+++. +.
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~-~il~G~~~~~a~~~~~g~v~---~~------ 139 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKE-TVLGGVTTHGAVREGPGHVV---HT------ 139 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcc-eEEEEEeeeeeEecCCceEE---Ee------
Confidence 9999999999999999999999854 4556775 333333 44444 3332 333 4555552 11
Q ss_pred CCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 256 G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
|.|... +........+..+...+.|+..|..
T Consensus 140 g~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~ 170 (307)
T COG1893 140 GLGDTV-IGELRGGRDELVKALAELFKEAGLE 170 (307)
T ss_pred cCCcEE-EccCCCCchHHHHHHHHHHHhCCCC
Confidence 234555 3322222224555555666777754
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00014 Score=71.24 Aligned_cols=199 Identities=17% Similarity=0.198 Sum_probs=136.5
Q ss_pred HHcCceecCCCcCCHhhhhccCCeEEEeecc-hhHHHHHHHHHhcCCCCcEEEEeccchHH-H---hhhccccCCCCccE
Q 012479 158 RAAGFTEENGTLGDIYETISGSDLVLLLISD-AAQADNYEKIFSCMKPNSILGLSHGFLLG-H---LQSMGLDFPKNIGV 232 (462)
Q Consensus 158 ~~~G~~~~d~~~~~~~eav~~ADvViLavpd-~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~-~---~~~~~i~~p~~v~V 232 (462)
++.|+.+ +.|..|++++||+||-=.|- ..|.++++++.+.+++|++|+.++-+... + ++. .=+++.+|
T Consensus 123 ed~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed---~gredlnv 195 (343)
T COG4074 123 EDMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFED---MGREDLNV 195 (343)
T ss_pred HHceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHH---hCccccce
Confidence 3467776 57888999999999998884 56789999999999999999988865321 1 121 12478899
Q ss_pred EecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhH
Q 012479 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGA 312 (462)
Q Consensus 233 V~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~ 312 (462)
-..||-+ .+.. +|-.+ |+ +.-+++++++..-++.+.--+. .+. ....|.|-.+-.|..
T Consensus 196 tsyhpg~-vpem------------kgqvy-ia-egyaseeavn~lyelg~karg~-afk------~pa~llgpvcdmcsa 253 (343)
T COG4074 196 TSYHPGT-VPEM------------KGQVY-IA-EGYASEEAVNALYELGEKARGL-AFK------VPAYLLGPVCDMCSA 253 (343)
T ss_pred eccCCCC-Cccc------------cCcEE-Ee-cccccHHHHHHHHHHHHHhhcc-ccc------CcHHhhchHHHHHHH
Confidence 9999954 3331 34444 44 6678888888776665433221 111 123377888888888
Q ss_pred HHHHHHHHHHHH---H--HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHHHHHH
Q 012479 313 VHGIVESLFRRF---T--ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387 (462)
Q Consensus 313 ~paliea~~d~~---v--~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~~m~e 387 (462)
+.+++-|+.-.+ | -.|-|-+.|...+.|.+.+ |++++.+.|++.|-+.+.. .+-.|..-+-.+-|..+++-.
T Consensus 254 vtaivyagll~yrdavt~ilgapadfaqmma~eal~q-i~~lmee~gidkmeealdp--aallgtadsmnfgpladilpt 330 (343)
T COG4074 254 VTAIVYAGLLTYRDAVTDILGAPADFAQMMAVEALQQ-IAKLMEEEGIDKMEEALDP--AALLGTADSMNFGPLADILPT 330 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHhhhhHHHhhcCH--HHhhCccccccccchHHHhHH
Confidence 887665554333 2 2499999999999999996 9999999999999999874 333443333334454444444
Q ss_pred H
Q 012479 388 C 388 (462)
Q Consensus 388 ~ 388 (462)
.
T Consensus 331 a 331 (343)
T COG4074 331 A 331 (343)
T ss_pred H
Confidence 3
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.7e-06 Score=81.49 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+||||||+|.||..++++|.+.. .++++. ++++..++..+.+.+.|... ...+.+++++++|+|++++|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 156655 34444344445556666421 15688999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecc
Q 012479 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~ga-iL~~a~G 213 (462)
+.++..+.. +.|+ +++.+.|
T Consensus 80 h~e~~~~aL---~aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVL---AAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHH---HcCCcEEEecch
Confidence 988876654 4565 4444434
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.9e-06 Score=82.38 Aligned_cols=94 Identities=22% Similarity=0.357 Sum_probs=72.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| +|++|||+|.+|.+++..|+.. |.+|++..|+.. ..+.++..|.... ...+..+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 45678 9999999999999999999988 888888877643 3566777787531 123567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+|+.. +-++....|+++.+|++.+
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEc
Confidence 98643 2245677899999988775
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=85.97 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+. +.+.+++++.+|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 3688 9999999999999999999988 9898887665444 4555667886 457889999999999998
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~ 215 (462)
.. ..++. +....||+|.+++.++.+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 54 34565 6788899999988877664
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.5e-05 Score=81.70 Aligned_cols=182 Identities=17% Similarity=0.191 Sum_probs=122.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC----ceecCCCcCCHhhh---hccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYET---ISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G----~~~~d~~~~~~~ea---v~~ADvViL 184 (462)
..||+||+|.||..+|+|+.+. |+.|.|.+|..+++.+.-++.+ ++. ..+++|. ++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 4799999999999999999999 9999999999888776666654 232 4567764 567788999
Q ss_pred eecchh-HHHHHHHHHhcCCCCcEEEEeccc----hHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCc
Q 012479 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGF----LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (462)
Q Consensus 185 avpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~----~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv 259 (462)
.|+-.. +..++++++|+|.+|.+|+|-+-- ++....+ .-.+++.||+.==.| |. +|.
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-GE--------------eGA 135 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-GE--------------EGA 135 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-cc--------------ccc
Confidence 998753 456889999999999999987643 2333222 235688898633222 11 122
Q ss_pred ---eEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH--------------HHHHHHHH
Q 012479 260 ---NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH--------------GIVESLFR 322 (462)
Q Consensus 260 ---~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p--------------aliea~~d 322 (462)
|+ |-|.. +.++.+.+.-++..|-+.. ..+--.+..|+. |.+| .+|--.|+
T Consensus 136 ~~GPS-iMpGG--~~eay~~v~pil~~IaAk~------~g~pCc~~iG~~----GAGHfVKmVHNGIEYgDMQlIaE~Y~ 202 (473)
T COG0362 136 RHGPS-IMPGG--QKEAYELVAPILTKIAAKV------DGEPCCTWIGPD----GAGHFVKMVHNGIEYGDMQLIAEAYD 202 (473)
T ss_pred ccCCC-cCCCC--CHHHHHHHHHHHHHHHhhc------CCCCceeeECCC----CCCceeeeeecCchHHHHHHHHHHHH
Confidence 33 33444 7889999999999997641 011111222222 3333 16666677
Q ss_pred HHHH-cCCCHHHH
Q 012479 323 RFTE-NGMNEDLA 334 (462)
Q Consensus 323 ~~v~-~G~~~e~A 334 (462)
-+.. .|++.++-
T Consensus 203 ilk~~lgls~~ei 215 (473)
T COG0362 203 ILKDGLGLSAEEI 215 (473)
T ss_pred HHHHhcCCCHHHH
Confidence 7776 68887754
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.8e-06 Score=83.20 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=61.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|+|||.| .||..+|.+|.+. |..|.++.+.. .++.+++++||+||.
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 46899 999999996 9999999999999 99988875431 257788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++.... ++. ..+++|++|++++
T Consensus 209 avg~~~~---v~~--~~ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRL---IDA--DWLKPGAVVIDVG 231 (301)
T ss_pred ecCChhc---ccH--hhccCCcEEEEec
Confidence 9997643 221 1289999888873
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00036 Score=71.37 Aligned_cols=207 Identities=13% Similarity=0.069 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHhhhhhcCCcEEEEEecCCch-----------------hHHHHHHcCceecC-------C--CcC--CHh
Q 012479 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-----------------SFAEARAAGFTEEN-------G--TLG--DIY 173 (462)
Q Consensus 122 mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-----------------s~~~A~~~G~~~~d-------~--~~~--~~~ 173 (462)
||..||..+..+ |++|++.+...+. .++.+.+.|..... . .+. +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 799999999988 9999888766421 11222233322100 0 011 256
Q ss_pred hhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhc
Q 012479 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (462)
Q Consensus 174 eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~ 250 (462)
+++++||+||-++|..... .++.+|.+.++++++|. -++++.+..+.. ..+..-+++.+|+--|.+..+
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~~----- 146 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLMP----- 146 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccCc-----
Confidence 8899999999999977664 58889999999999874 555666655554 222224799999988876621
Q ss_pred CccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCC
Q 012479 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (462)
Q Consensus 251 G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~ 330 (462)
.-= +..+...+.+.++.+..++..+|.. ++.. .+.. .+ ++......++.-.+..+-+.|.+
T Consensus 147 --------lvE-Vv~g~~t~~e~~~~~~~ll~~lGk~-~v~v---~d~~-----Gf-i~nri~~~~l~EAl~l~e~g~~~ 207 (314)
T PRK08269 147 --------LVE-VSPSDATDPAVVDRLAALLERIGKV-PVVC---GPSP-----GY-IVPRIQALAMNEAARMVEEGVAS 207 (314)
T ss_pred --------eEE-EeCCCCCCHHHHHHHHHHHHHcCCc-EEEe---cCCC-----Cc-chHHHHHHHHHHHHHHHHhCCCC
Confidence 111 4456788899999999999999975 2211 1211 11 34444444444444555666789
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHhcHHHHHHhc
Q 012479 331 EDLAYKNTVECI------TGIISKIISTQGMLAVYNSF 362 (462)
Q Consensus 331 ~e~A~~~~~e~i------~Gli~~li~e~G~~~m~~~v 362 (462)
+++......... .| .-+++-..|+..+++..
T Consensus 208 ~e~iD~a~~~g~G~~~~~~G-pf~~~D~~Gld~~~~~~ 244 (314)
T PRK08269 208 AEDIDKAIRTGFGLRFAVLG-LLEFIDWGGCDILYYAS 244 (314)
T ss_pred HHHHHHHHHhCCCCCccCcC-HHHHHHhhhHHHHHHHH
Confidence 988776443221 25 45566667776555543
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=85.59 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=71.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
-+.| ++|+|||+|.+|..+|+.++.. |.+|++..+. +.....|...|+.. .+.+++++.+|+|+.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~d-p~r~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEID-PICALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-chhhHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 3788 9999999999999999999987 8888776554 32334677788873 47889999999999876
Q ss_pred cchhHHHHH-HHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl-~eI~~~Lk~gaiL~~a~G~ 214 (462)
... .++ .+.+..||+|.+|+.++-+
T Consensus 318 Gt~---~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 318 GNK---DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCc---cchHHHHHhcCCCCCEEEEcCCC
Confidence 643 333 5677889999998866554
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.6e-05 Score=67.05 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=62.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.+|+|||+|.+|..+...+++.. .+.+++...+.+. +....+++.|+.. ..+.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~----~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS----PDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT----TTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhcC----CCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 37999999999999999998761 1456554445544 3344467788875 788999887 78999999999
Q ss_pred hhHHHHHHHHHh
Q 012479 189 AAQADNYEKIFS 200 (462)
Q Consensus 189 ~a~~~vl~eI~~ 200 (462)
..+.++..+...
T Consensus 73 ~~h~~~~~~~l~ 84 (120)
T PF01408_consen 73 SSHAEIAKKALE 84 (120)
T ss_dssp GGHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 999998887654
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.2e-05 Score=83.24 Aligned_cols=93 Identities=23% Similarity=0.261 Sum_probs=74.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|+|||+|.+|..+++.++.. |.+|++..+. +.....|...|+. ..+.+++++.+|+||.+
T Consensus 198 ~~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~-----~~~~~e~v~~aDVVI~a 264 (413)
T cd00401 198 VMIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYE-----VMTMEEAVKEGDIFVTT 264 (413)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCE-----EccHHHHHcCCCEEEEC
Confidence 34788 9999999999999999999988 8888775544 4557888899986 34667889999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~ 214 (462)
+... .++. +....+++|.+|+.++.+
T Consensus 265 tG~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 265 TGNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 8643 3555 467889999988766644
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.4e-05 Score=70.12 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=70.6
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCC----------cCCHhhhhccCCeEE
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~----------~~~~~eav~~ADvVi 183 (462)
|+|||.|+||.-+|-.|.+. |.+|.+..|.. ..+.-++.|+...+.. ..+..+..+..|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999988 99988777653 3455566777542111 111123567899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcE-EEEeccch
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSI-LGLSHGFL 215 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~ 215 (462)
+++|-.+..++++.+++++.+++. |++--|+.
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 999999999999999999999865 55666875
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.3e-05 Score=79.69 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=69.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+.| ++|+|||+|.||..+++.|+.. | .+|++.+|...+..+.|.+.|.... ...+..+++.++|+||.+|
T Consensus 176 l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISAT 246 (311)
T ss_pred ccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECC
Confidence 678 9999999999999999999986 5 4677777776666677888776421 0234567889999999999
Q ss_pred cchhHHHHHHHHHhcC-CCCcEEEEec
Q 012479 187 SDAAQADNYEKIFSCM-KPNSILGLSH 212 (462)
Q Consensus 187 pd~a~~~vl~eI~~~L-k~gaiL~~a~ 212 (462)
|.....++++.+.... +++.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 9776655555543322 2455666554
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.6e-05 Score=67.19 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=60.7
Q ss_pred EEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEE-ecCCchhHHHHHHcC-ceecCCCcCCHhhh-hccCCeEEEeecc
Q 012479 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (462)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg-~r~~~~s~~~A~~~G-~~~~d~~~~~~~ea-v~~ADvViLavpd 188 (462)
||+||| .|.+|..++..|.+. .++++... .++.+.....+...+ +....-...+..+. ..++|+||+++|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 689999 589999999999884 04554333 222211111122222 11000000111111 2589999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
..+.+++..+.+.+++|++|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999888767778999999999886
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.7e-05 Score=79.40 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHc---C--ceecCCCcCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~---G--~~~~d~~~~~~~eav~~ADvViLa 185 (462)
++|+|||+|.||..+++.+.... + .+|.+++|..++..+.+.+. | +.. +.+.++++++||+|+.+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~-----~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~a 196 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVR-----PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISCA 196 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEEe
Confidence 89999999999999998776520 3 47888888766656655553 4 332 46788899999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+|.. ..++.. ..++||++|..+
T Consensus 197 T~s~--~pvl~~--~~l~~g~~i~~i 218 (314)
T PRK06141 197 TLST--EPLVRG--EWLKPGTHLDLV 218 (314)
T ss_pred eCCC--CCEecH--HHcCCCCEEEee
Confidence 9865 233331 457889854433
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.4e-05 Score=78.30 Aligned_cols=96 Identities=17% Similarity=0.084 Sum_probs=65.7
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH---HcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+.++++|||+|.||..+++.|.... ..-+|.+++|..++....+. +.|+.. ..+.+.+|++++||+|+.||
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEec
Confidence 3489999999999999999887641 02367777776555444333 345321 01578999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|... .++. ...+|||+.|.-++...
T Consensus 201 ~s~~--P~~~--~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 201 PSRK--PVVK--ADWVSEGTHINAIGADA 225 (325)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCCC
Confidence 8642 2332 23568999887776654
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=8.4e-05 Score=75.33 Aligned_cols=122 Identities=19% Similarity=0.201 Sum_probs=80.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-HcCceecC-CC--c----CCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEEN-GT--L----GDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~d-~~--~----~~~~eav~~ADvVi 183 (462)
+||+|||.|.||+-+|..|.++ |.+|.+..|..+ ..+.-+ +.|+...+ +. . ....+..+..|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999998 888887777533 233333 33553211 10 0 01112245789999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEE-EEeccchH-HHhhhccccCCCC-----ccEEecccCCCchh
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKN-----IGVIAVCPKGMGPS 243 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~i-~~~~~~~i~~p~~-----v~VV~v~Pngpg~~ 243 (462)
++||-....+.++.+.|++.+++.| ++--|+.. ..+.. .+|++ +..+.....+|+.+
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~---~~~~~~v~~g~~~~ga~~~~pg~v 139 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA---RVPHARCIFASSTEGAFRDGDWRV 139 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH---hCCCCcEEEEEeeeceecCCCCEE
Confidence 9999999999999999999998864 56678853 33333 34443 12233445566665
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.9e-05 Score=77.33 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=59.8
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++| |+|+||| .|.||..+|.+|.+. |..|.++..+. .+.++++++||+||.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 5899 9999999 999999999999998 99988874221 1356788999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++...+ +++. ++++|++|++++
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDvG 230 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDVG 230 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEcC
Confidence 997653 3321 289999888874
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.4e-05 Score=68.50 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=67.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcC---ceecCCCcCCHhhhhccCCe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~eav~~ADv 181 (462)
..++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+ +.. ....+..+.++++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 46888 9999999999999999999998 87 48889998777777777662 211 014456678899999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCC-cEEEEec
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g-aiL~~a~ 212 (462)
||.+||.... .+-++..+...+. .++.|.+
T Consensus 79 vI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 9999997654 2222333322222 3677774
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.4e-05 Score=72.01 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=50.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-cCCeEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-~ADvVi 183 (462)
...++| |+|+|+|+|+||.++|+.|.+. |.+|++.+++..+..+.+...|... .+.+++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 366899 9999999999999999999998 9988866554333333334446542 24455543 799998
Q ss_pred Eeec
Q 012479 184 LLIS 187 (462)
Q Consensus 184 Lavp 187 (462)
.+..
T Consensus 91 p~A~ 94 (200)
T cd01075 91 PCAL 94 (200)
T ss_pred eccc
Confidence 6654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.8e-05 Score=79.00 Aligned_cols=74 Identities=23% Similarity=0.316 Sum_probs=57.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++| ++|+|||+|.||..+++.|+.. |. +|++.+|...+..+.+.+.|.... ...+..+++.++|+||.+
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEEC
Confidence 3678 9999999999999999999988 87 788888876665667777664310 123566788999999999
Q ss_pred ecch
Q 012479 186 ISDA 189 (462)
Q Consensus 186 vpd~ 189 (462)
|+..
T Consensus 250 T~s~ 253 (423)
T PRK00045 250 TGAP 253 (423)
T ss_pred CCCC
Confidence 9844
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00081 Score=70.72 Aligned_cols=151 Identities=20% Similarity=0.303 Sum_probs=96.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh-------------------HHHHHHcC-ceecCCCcCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAG-FTEENGTLGD 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s-------------------~~~A~~~G-~~~~d~~~~~ 171 (462)
.+|+|||+|-+|..+|..+.++ |++| +|.+.+.+. .+.+.+.| +.. +.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra----Ttd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA----TTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE----ecC
Confidence 6899999999999999999998 8886 466544422 33455555 332 345
Q ss_pred HhhhhccCCeEEEeecchhH----------HHHHHHHHhcCCCCcEEEEec----cch--H-HHh-hh-ccccCCCCccE
Q 012479 172 IYETISGSDLVLLLISDAAQ----------ADNYEKIFSCMKPNSILGLSH----GFL--L-GHL-QS-MGLDFPKNIGV 232 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~----------~~vl~eI~~~Lk~gaiL~~a~----G~~--i-~~~-~~-~~i~~p~~v~V 232 (462)
.++ ++.||++++|||...- ....+.|++.|++|++|++=+ |.+ + ..+ +. .++.+++|+ +
T Consensus 79 ~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df-~ 156 (436)
T COG0677 79 PEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF-Y 156 (436)
T ss_pred hhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee-e
Confidence 554 4599999999984321 223456999999999876443 542 1 122 22 345665553 3
Q ss_pred EecccC--CCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 233 IAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 233 V~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.-+|- .||...+++-. .+-+|. .++++..+.+.++-+.+=..
T Consensus 157 laysPERv~PG~~~~el~~---------~~kVIg---G~tp~~~e~a~~lY~~iv~~ 201 (436)
T COG0677 157 LAYSPERVLPGNVLKELVN---------NPKVIG---GVTPKCAELAAALYKTIVEG 201 (436)
T ss_pred EeeCccccCCCchhhhhhc---------CCceee---cCCHHHHHHHHHHHHHheEE
Confidence 445553 56776544432 344333 46788888888888877544
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00014 Score=73.65 Aligned_cols=76 Identities=22% Similarity=0.252 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|+|||. |.||..+|..|.+. |..|.++. ++ +.+.++.+++||+||.
T Consensus 154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~---s~----------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTH---SR----------------TRNLAEVARKADILVV 207 (284)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEEC---CC----------------CCCHHHHHhhCCEEEE
Confidence 45899 99999999 99999999999998 88888762 11 2357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++..... +. .++++|+++++++
T Consensus 208 avg~~~~v---~~--~~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHFV---TK--EFVKEGAVVIDVG 230 (284)
T ss_pred ecCccccC---CH--HHccCCcEEEEec
Confidence 99975542 21 1389999988873
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00076 Score=66.44 Aligned_cols=213 Identities=11% Similarity=0.039 Sum_probs=128.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH----cCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
..|+|||.|..|.+..+..-+- ++. ++ -..++|.+.|+. .+.. ..+.+...+-.++||.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~--cs-~i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVA--CS-AISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------hee--eh-hhhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 5799999999999854433222 222 11 122344444443 3322 2344445566688888888
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeecc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q 267 (462)
|..+.++.... .-+||++|.+++|++-.-+-. . .-+.+.--..+||+.......+--.+- ++.-..|+ ..
T Consensus 77 d~~~s~vaa~~--~~rpg~iv~HcSga~~~~il~-~-~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~-ea 146 (289)
T COG5495 77 DALYSGVAATS--LNRPGTIVAHCSGANGSGILA-P-LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGIT-EA 146 (289)
T ss_pred HHHHHHHHHhc--ccCCCeEEEEccCCCchhhhh-h-hhhcCCcceeecccccccCCHHHHHhC-----cccEEEee-cc
Confidence 88666665543 347999999999996322211 0 112234446799987666554444433 23333333 32
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH-HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 012479 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGII 346 (462)
Q Consensus 268 d~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL-~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli 346 (462)
+.....+++.++..+|+.... +.|..-.+||...+. ++.+..+.--..+....+|.++-++.-+.+--+.| .
T Consensus 147 --D~~g~ai~q~la~emgg~~f~----V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g-~ 219 (289)
T COG5495 147 --DDVGYAIVQSLALEMGGEPFC----VREEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVEVGPLARG-A 219 (289)
T ss_pred --cccccHHHHHHHHHhCCCcee----echhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeeeehHHHHH-H
Confidence 344566789999999997322 135556699998766 44444555556677889999998887765555555 4
Q ss_pred HHHHHHhcH
Q 012479 347 SKIISTQGM 355 (462)
Q Consensus 347 ~~li~e~G~ 355 (462)
.+-.++.|.
T Consensus 220 ~~n~~qrg~ 228 (289)
T COG5495 220 LENTLQRGQ 228 (289)
T ss_pred HHHHHHhhh
Confidence 555555555
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00016 Score=73.52 Aligned_cols=91 Identities=22% Similarity=0.184 Sum_probs=66.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc---CceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
++|+|||+|.||..++..+.... ++ +|.++.|..++..+.+.+. ++... +.+.++++.++|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGL-----PVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEEEccC
Confidence 89999999999999999997530 44 6778888766655555554 33321 3578899999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
... .++. ..++||+.|.-.+...
T Consensus 198 s~~--Pl~~---~~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 198 SRT--PVYP---EAARAGRLVVAVGAFT 220 (304)
T ss_pred CCC--ceeC---ccCCCCCEEEecCCCC
Confidence 664 3443 2478999888776654
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00041 Score=69.17 Aligned_cols=91 Identities=22% Similarity=0.229 Sum_probs=57.1
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--CceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
|+||||||+|.||..+++.|.+. .++++......+....+..... +... +.+.+++..+.|+|+.|+|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 47999999999999999999865 0344333332221111111212 4432 46777764569999999999
Q ss_pred hhHHHHHHHHHhcCCCCc-EEEEecc
Q 012479 189 AAQADNYEKIFSCMKPNS-ILGLSHG 213 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~ga-iL~~a~G 213 (462)
..+.++..++. +.|+ +++.+.|
T Consensus 72 ~~~~e~~~~aL---~aGk~Vvi~s~~ 94 (265)
T PRK13303 72 AALKEHVVPIL---KAGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHHHH---HcCCCEEEeChH
Confidence 98877766654 4455 4444444
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00025 Score=73.26 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=69.2
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhccCCeEEEe
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+...++|||+|.|+..|++.++.- +++ +|.|+.|..+...+.+.. .+... -..+.+.++++++||+|+-+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 447899999999999999999875 144 678888876655554432 33210 01267889999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
||... .++. ...++||+.|.-+++.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99876 3443 3457899998877765
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00042 Score=68.74 Aligned_cols=96 Identities=15% Similarity=0.254 Sum_probs=64.2
Q ss_pred CCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
++||+|||+ |.||..++..+.+. .+++++...+.+.+........|+.. ..+.+++++++|+|+.++||.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 379999998 99999999988764 15666555554332222223344432 567888888899999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeccchHHH
Q 012479 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGH 218 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~~ 218 (462)
...++...... .|. +|+-.-|++...
T Consensus 72 ~~~~~~~~al~---~G~~vvigttG~s~~~ 98 (257)
T PRK00048 72 ATLENLEFALE---HGKPLVIGTTGFTEEQ 98 (257)
T ss_pred HHHHHHHHHHH---cCCCEEEECCCCCHHH
Confidence 88777765443 454 343355776543
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00019 Score=76.02 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=57.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++| ++|+|||+|.||..+++.|+.. | .+|++.+|...+..+.+.+.|.... ...+..+++.++|+||.+
T Consensus 177 ~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEEC
Confidence 4778 9999999999999999999988 8 4788888876655567776664310 124566888999999999
Q ss_pred ecchh
Q 012479 186 ISDAA 190 (462)
Q Consensus 186 vpd~a 190 (462)
|+...
T Consensus 248 T~s~~ 252 (417)
T TIGR01035 248 TGAPH 252 (417)
T ss_pred CCCCC
Confidence 97443
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00027 Score=73.47 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=67.2
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhccCCeEEEe
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+-++++|||.|.|+..+++.+..-. .+ +|.++.|..++..+.+++ .|+.. ..+.+.++++++||+|+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTV 200 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 3478999999999999999887641 33 688888775544443333 24321 0156899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
|+......+++ ...++||+.|.-.+.+..
T Consensus 201 T~S~~~~Pvl~--~~~lkpG~hV~aIGs~~p 229 (346)
T PRK07589 201 TADKTNATILT--DDMVEPGMHINAVGGDCP 229 (346)
T ss_pred cCCCCCCceec--HHHcCCCcEEEecCCCCC
Confidence 97543223444 135789998877766643
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.014 Score=60.51 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=71.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhh-cCCcEEEEEecCC---chhHHHHHH-----------cCceecC--CCcCCHhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKG---SRSFAEARA-----------AGFTEEN--GTLGDIYE 174 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~-g~G~~Vivg~r~~---~~s~~~A~~-----------~G~~~~d--~~~~~~~e 174 (462)
.||+|||.|+=|.++|+.+...-.+. -+..+|..+.+.. .+.....+- -|+.... -.+.|+.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 68999999999999999988751111 1122455544321 110111110 0111000 01578899
Q ss_pred hhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchH
Q 012479 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (462)
Q Consensus 175 av~~ADvViLavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i 216 (462)
++++||+++..+|.+-...++++|..+++++.. |+.+-||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999986 788888854
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00028 Score=71.76 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH----cCceecCCCcCCHhhhhccCCeEEEe
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++++|||.|.||..+++.+..- +.+ +|.++.|..++..+.+.+ .|+.. ..+.+.++++.+||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 38999999999999999998864 134 688888776655554443 24321 0156899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
|+-.. .+++ ...++||+.|.-.+.+..
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~~p 216 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSNYP 216 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCCCC
Confidence 99542 3443 235788988877766543
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00043 Score=70.87 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=65.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH----cCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|+|||+|.||.+++..+.... ++ +|.++.|..++..+.+++ .++.. ..+.+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR-----DIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC-----CccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 89999999999999998876431 44 577777765555544442 24421 01467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|-. + .++. ..+++|+.|.-++.+.
T Consensus 201 ~s~-~-p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 201 NAK-T-PVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCC-C-cchH---HhcCCCcEEEecCCCC
Confidence 965 2 3443 5679999988777664
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00034 Score=71.70 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=61.9
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH----cCceecCCCcCCHhhhhccCCeEEEe
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++|+|||+|.||..++.++... .++ .+.+++|..++..+.+.+ .|+.. ..+.+.+++++ +|+|+++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEe
Confidence 37899999999999999999753 145 455566554443333333 24321 01457888887 9999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
||... .++. ...+++|+.|.-.+.+.
T Consensus 201 Tps~~--P~~~--~~~l~~g~hV~~iGs~~ 226 (326)
T PRK06046 201 TPSRK--PVVK--AEWIKEGTHINAIGADA 226 (326)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecCCCC
Confidence 99753 3333 23468999887776654
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00099 Score=67.20 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH--cCceec--CC---CcCCHhhhhccCCeE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NG---TLGDIYETISGSDLV 182 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--d~---~~~~~~eav~~ADvV 182 (462)
|+||+|||.|+||..+|..+... |+ ++++.+...+.....+.+ ...... +. ...+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 58999999999999999999877 65 777666543322221211 111000 00 02344 568999999
Q ss_pred EEee
Q 012479 183 LLLI 186 (462)
Q Consensus 183 iLav 186 (462)
|+++
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00063 Score=74.23 Aligned_cols=85 Identities=18% Similarity=0.133 Sum_probs=60.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhhccCCeEEEe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+.+ ++|+|||.|.||..++.+|... |. +|++.+|+..+....+.+. |....-....+..+++.++|+||.+
T Consensus 264 l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 677 9999999999999999999988 86 6888888766666666654 2211000134567889999999999
Q ss_pred ecc---hhHHHHHHHHH
Q 012479 186 ISD---AAQADNYEKIF 199 (462)
Q Consensus 186 vpd---~a~~~vl~eI~ 199 (462)
|+- -...+.++++.
T Consensus 337 T~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 337 TSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCCCCeeCHHHHHHhh
Confidence 862 22345555544
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00042 Score=71.06 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc----CceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++++|||+|.||..++..|... .++ +|.|+.|..++..+.+.+. |+... .+.+.++++++||+|+.+|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~-----~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~--~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV-----RDIRSARIWARDSAKAEALALQLSSLLGIDVT--AATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh-----CCccEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhccCCEEEEec
Confidence 7999999999999999999753 054 6788888766656555543 54320 1467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|... .++. ...+++|+.|...+.
T Consensus 203 ~s~~--p~i~--~~~l~~g~~i~~vg~ 225 (326)
T TIGR02992 203 PSET--PILH--AEWLEPGQHVTAMGS 225 (326)
T ss_pred CCCC--cEec--HHHcCCCcEEEeeCC
Confidence 9643 2332 134788987765543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0014 Score=65.46 Aligned_cols=95 Identities=12% Similarity=0.162 Sum_probs=62.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEec-CCchh--HHHHHH-----cCceecCCCcCCHhhhhccCCe
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRS--FAEARA-----AGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r-~~~~s--~~~A~~-----~G~~~~d~~~~~~~eav~~ADv 181 (462)
|+||+||| +|.||..+++.+.+. .+++++...+ .++.. ...+.. .|+.. +.+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 36899999 699999999999864 1667665555 32221 122222 23432 4577777557999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCc-EEEEeccchHH
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~ 217 (462)
||.++||..+.+++..... .|. +|+-..|++..
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e 105 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEE 105 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHH
Confidence 9999999998887776543 343 45445587643
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00081 Score=66.22 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=103.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCceec--------C-----
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE--------N----- 166 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~--------d----- 166 (462)
++.|+|||.|.||..||+-...+ |++|++.+++. +.+.+|.+ .+.... +
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~~-~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDANE-DALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCCH-HHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999999 99988776543 22333322 122110 0
Q ss_pred -CCcCCHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCch
Q 012479 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 167 -~~~~~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
....+..+++++||+||=++-...- .+++++|-..-++.+++ +-.+++.+..+.. .....-.|.+.|=.-|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 0145677889999999866653322 34677776667888876 4667787766543 223345788888777777
Q ss_pred hhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.. +-+ +.-+.+.+++-......+.+++|.+
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 632 222 2236788999999999999999975
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00052 Score=70.71 Aligned_cols=85 Identities=9% Similarity=0.175 Sum_probs=55.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
.+|+|||+|+||..++..+.+. .+++++...+.+... ......+... ..+..+++.+.|+|++|+|...+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 5899999999999999999865 156665444443211 1222234432 35677778899999999998877
Q ss_pred HHHHHHHHhcCCCCcEEE
Q 012479 192 ADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL~ 209 (462)
.+... +.|+.|.-++
T Consensus 74 ~~~~~---~~L~aG~NVV 88 (324)
T TIGR01921 74 IPEQA---PYFAQFANTV 88 (324)
T ss_pred HHHHH---HHHHcCCCEE
Confidence 55443 3344555333
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00023 Score=72.67 Aligned_cols=96 Identities=22% Similarity=0.282 Sum_probs=55.0
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhccCCeEEEee
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.++++|||+|.||..++..+..-. ++ +|.|+.|+.++..+.+.+ .|+.. ..+.+.++++++||+|+.+|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE--
T ss_pred CceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEcc
Confidence 378999999999999999998751 44 677888775443333333 24332 12578999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|......+++ ...++||+.|.-++...
T Consensus 201 ~s~~~~P~~~--~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 201 PSTTPAPVFD--AEWLKPGTHINAIGSYT 227 (313)
T ss_dssp --SSEEESB---GGGS-TT-EEEE-S-SS
T ss_pred CCCCCCcccc--HHHcCCCcEEEEecCCC
Confidence 9665213333 23578898877666553
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00062 Score=59.71 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=58.4
Q ss_pred EEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEE-EecCC--chhHHHHHH--cCceecCCCcC-CHhhhhccCCeEEEe
Q 012479 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG--SRSFAEARA--AGFTEENGTLG-DIYETISGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Viv-g~r~~--~~s~~~A~~--~G~~~~d~~~~-~~~eav~~ADvViLa 185 (462)
||+||| .|.+|..+.+.|.+. + .++++. ..++. .+.+..... .++.. -.+. ...+.++++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p----~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-P----DFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-S----TEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-C----CccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 1 344333 33332 122332211 11211 0011 233456999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+|+....++.+.+ +++|..|++.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999998888876 4578788888774
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00051 Score=64.67 Aligned_cols=97 Identities=21% Similarity=0.165 Sum_probs=62.3
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----Cc--eecC-CCcCCHhhhhcc
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEEN-GTLGDIYETISG 178 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~--~~~d-~~~~~~~eav~~ 178 (462)
.+++ +++.|+|. |.+|.+++..|.+. |.+|++..|+..+..+.+... +. ...+ ....+..+++++
T Consensus 25 ~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 25 DLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 5678 99999996 99999999999988 888887777644433333322 21 1100 001223478899
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+|+||.++|..... ........+++.+++|..
T Consensus 98 ~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 98 ADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred CCEEEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 99999999977651 112222345566777653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00062 Score=69.79 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=66.8
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHH---HcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+.++++|||+|.|+..+++.+..-. .+ +|.|+.|..++..+.+. +.|+... .+.+.++++++||+|+.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVWGRSETALEEYRQYAQALGFAVN--TTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHhcCCcEE--EECCHHHHhcCCCEEEEe
Confidence 3489999999999999999987641 33 78888887665444332 2354321 146789999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|+-.. .+++ ...++||+.|.-++.+.
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 98542 4443 23578999887776654
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00062 Score=68.67 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=54.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcC-----ceecCCCcCCHhhhhccCC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~d~~~~~~~eav~~AD 180 (462)
.+++ ++|.|||.|-.|.+++..|.+. |. +|.+.+|...+..+.++..+ ... ....+..+.++++|
T Consensus 124 ~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~~~aD 194 (284)
T PRK12549 124 DASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAALAAAD 194 (284)
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhhCCCC
Confidence 4567 8999999999999999999988 87 78888887666666655432 111 00223455678899
Q ss_pred eEEEeecchh
Q 012479 181 LVLLLISDAA 190 (462)
Q Consensus 181 vViLavpd~a 190 (462)
+||.+||...
T Consensus 195 iVInaTp~Gm 204 (284)
T PRK12549 195 GLVHATPTGM 204 (284)
T ss_pred EEEECCcCCC
Confidence 9999999653
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00087 Score=59.38 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=60.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH---HHHH-----HcCceecCCCcCCHhhhhccCCeE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
+||+|+|+ |.||..+++.+.+. .+++++.+.++..+.. +... ..|+.. ..+.+++++.+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999984 1777666655433100 1111 233433 46889999999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCc-EEEEeccchH
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL 216 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i 216 (462)
|-.+-|+...+.++....+ |. +|+=+.|++-
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSD 103 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCH
Confidence 9999888887777765544 44 5666788863
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0013 Score=68.17 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=63.9
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH-HHHHHcCceec-----------CC---CcCCHhhh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYET 175 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~-----------d~---~~~~~~ea 175 (462)
|.||||+|+|.||..+++.+.+. .+++++...+...... ..++..|+... +. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 46899999999999999998864 1567665555433222 22343343200 00 02356677
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 176 v~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
..++|+|+.++|+....+..+.. ++.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHH---HHCCCEEEEcCCC
Confidence 78899999999999888777644 3457778888774
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0021 Score=65.57 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=43.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH----------cCceecCCCcCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~----------~G~~~~d~~~~~~~eav~~AD 180 (462)
+||+|||.|.||..+|..|... |+ +|++.+.........+.. .+... ...+.++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence 6899999999999999999887 65 766655532211112110 01110 1245655 78999
Q ss_pred eEEEeec
Q 012479 181 LVLLLIS 187 (462)
Q Consensus 181 vViLavp 187 (462)
+||++.+
T Consensus 72 iVIitag 78 (305)
T TIGR01763 72 IVVITAG 78 (305)
T ss_pred EEEEcCC
Confidence 9999998
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0006 Score=72.44 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=58.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcC-ceecCCCcCCHhhhhccCCeEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~eav~~ADvVi 183 (462)
..++| ++|.|||.|-||.+++.+|.+. |. ++++.+|...+..+.+.+.| ... ....+..+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence 34678 9999999999999999999988 86 68888888777777777765 221 01244567899999999
Q ss_pred Eeecc
Q 012479 184 LLISD 188 (462)
Q Consensus 184 Lavpd 188 (462)
.||+.
T Consensus 248 ~aT~a 252 (414)
T PRK13940 248 AAVNV 252 (414)
T ss_pred ECcCC
Confidence 99984
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00092 Score=69.91 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=65.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-C-CCcCCHhhhhccCCeEEEe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d-~~~~~~~eav~~ADvViLa 185 (462)
+.+ .+|.|||+|.+|...++.++.. |.+|++.+++..+....+...|.... . ....+..+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 456 7899999999999999999988 88887777654433333334443210 0 0012356788999999999
Q ss_pred ecc--hhHHHHH-HHHHhcCCCCcEEEEec
Q 012479 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (462)
Q Consensus 186 vpd--~a~~~vl-~eI~~~Lk~gaiL~~a~ 212 (462)
++. .....++ ++....|+++.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 842 2223333 45666789999888765
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0024 Score=64.84 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=63.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch--hHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~--s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavp 187 (462)
.+|||||+|++|.-++..+.+. . ++++....+.+.. .++.|++.|+... ..+.+++++ +.|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~----~~elvaV~d~d~es~~la~A~~~Gi~~~---~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-E----HLEMVAMVGIDPESDGLARARELGVKTS---AEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-C----CcEEEEEEeCCcccHHHHHHHHCCCCEE---ECCHHHHhcCCCCCEEEECCC
Confidence 4799999999999998888764 1 4554433333332 3567888887531 346777774 5789999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+..+.+...... +.|+.|.+-..
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdekP 96 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLTP 96 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECCc
Confidence 999988876654 45776655443
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0012 Score=66.55 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=60.9
Q ss_pred CEEEEEcccchH-HHHHHHHHHhhhhhcCC--cEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEe
Q 012479 112 NQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG-~AiA~~Lrds~~~~g~G--~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLa 185 (462)
.||||||+|.++ ..++..+++. + +.++ +.+++.++..+.+++.|+.. ...+.++++++ .|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 689999999665 5688888876 4 3333 33455556677888888741 16789998875 5999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEE
Q 012479 186 ISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
+|+..+.++... .|+.|+.|
T Consensus 75 tp~~~H~e~~~~---AL~aGkhV 94 (342)
T COG0673 75 TPNALHAELALA---ALEAGKHV 94 (342)
T ss_pred CCChhhHHHHHH---HHhcCCEE
Confidence 999999987743 34556543
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0021 Score=65.73 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=65.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc--hhHHHHHHcCceecCCCcCCHhhhhc-----cCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~eav~-----~ADvViL 184 (462)
.||||||+|++|..++..+.++ .++++....+.+. +..+.|++.|+.. ...+.+++++ +.|+|++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 5899999999999999888865 1455544333333 3446788888763 1356787774 5899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++|...+.+...... +.|+.+++....
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sPA 103 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTPA 103 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCcc
Confidence 999999988877654 457777766543
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0025 Score=62.70 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=62.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
++|+|||||.+|..+..-+++- ..+++.++.+++ .++..+.+...+.. .+.+++|.+++.|+|+=|-.+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhhccceeeeeCCHHH
Confidence 4799999999999999988863 013444444444 33333333333333 25789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccc
Q 012479 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~ga-iL~~a~G~ 214 (462)
..+...++.. .|. +|+.+-|-
T Consensus 73 v~e~~~~~L~---~g~d~iV~SVGA 94 (255)
T COG1712 73 VREYVPKILK---AGIDVIVMSVGA 94 (255)
T ss_pred HHHHhHHHHh---cCCCEEEEechh
Confidence 9988877643 443 55555553
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00086 Score=69.72 Aligned_cols=94 Identities=24% Similarity=0.255 Sum_probs=75.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
--+.| |++.|.|||-.|..+|+.+|.. |-+|+|..-.+-+ .-+|.-+||. +...+|+++.+|++|-+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~-AleA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchH-HHHHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 44667 9999999999999999999987 8899887654333 4456668998 57899999999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~ 215 (462)
|-... |+. +.+..||+|++|.-++=|+
T Consensus 272 TGnkd---Vi~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 272 TGNKD---VIRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred cCCcC---ccCHHHHHhccCCeEEecccccc
Confidence 98754 443 5677799999988776564
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=61.87 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=57.2
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~m-G~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| ++|.|||.|-| |..+++.|... |.+|.+..|.. .+..+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 45889 99999999987 88899999988 88877776641 245678999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-.. ++.. ..++++.+|+|.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999653 2331 1356777777654
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0009 Score=71.01 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=62.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|++ +++.|||+|-||.-.|+.|... |+ +|+|.+|.-++.++.|.+.|... -...+..+.+.++|+||.
T Consensus 174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis 244 (414)
T COG0373 174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS 244 (414)
T ss_pred ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence 33788 9999999999999999999999 86 78899999889899999999542 124456778999999999
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+|.
T Consensus 245 sTs 247 (414)
T COG0373 245 STS 247 (414)
T ss_pred ecC
Confidence 986
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.014 Score=57.77 Aligned_cols=206 Identities=13% Similarity=0.158 Sum_probs=126.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCceec----C------CCcCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----N------GTLGD 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~----d------~~~~~ 171 (462)
.||+|+|.|..|+++|.-+..+ |++|..++-... +...+.++.|.-.. + +++.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 6899999999999999999888 999877654322 12222333343210 0 23578
Q ss_pred HhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEEEecc-chHHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~~a~G-~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
++|++++|=.|-=|+|.... ..+|+++-..+.|..+|.-+.+ |-...+.. .+-+.-.++-+||--|..-+
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~---gL~~k~q~lvaHPvNPPyfi---- 150 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA---GLINKEQCLVAHPVNPPYFI---- 150 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh---hhhhhhheeEecCCCCCccc----
Confidence 99999999888889996655 3477777666777766654433 22222211 11123467888996654331
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccc-cchhhhHhHHhHHHHHHH------HHH
Q 012479 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS-DIFGERGILLGAVHGIVE------SLF 321 (462)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~-dlfgeqtvL~G~~palie------a~~ 321 (462)
-..- +.|++..+++.++...++...+|-..| +.+.|..- .+=-.|-++|+=.-.++. .=.
T Consensus 151 ---------PLvE-lVPaPwTsp~tVdrt~~lM~sigq~pV---~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 151 ---------PLVE-LVPAPWTSPDTVDRTRALMRSIGQEPV---TLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred ---------chhe-eccCCCCChhHHHHHHHHHHHhCCCCc---ccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 1222 567888899999999999999995311 22222110 011112222222222222 224
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 012479 322 RRFTENGMNEDLAYKNTVECIT 343 (462)
Q Consensus 322 d~~v~~G~~~e~A~~~~~e~i~ 343 (462)
|.-..+|+-|-+|+.-.+||++
T Consensus 218 D~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 218 DAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred HHHHhcCCCcchhcccchhhhh
Confidence 6677899999999998888887
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.001 Score=69.93 Aligned_cols=93 Identities=19% Similarity=0.196 Sum_probs=63.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc-----Cc---eecCCCcCCHhhhhccC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GF---TEENGTLGDIYETISGS 179 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~-----G~---~~~d~~~~~~~eav~~A 179 (462)
++.++++|||+|.|+..+++.+..-. ..+ +|.|+.|..++..+.+++. |+ .. +.+.++++++|
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~----~~s~~eav~~A 224 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV----VDSIEEVVRGS 224 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE----eCCHHHHHcCC
Confidence 34589999999999999999987631 024 6788888765544433322 32 22 57899999999
Q ss_pred CeEEEeecchh----HHHHHHHHHhcCCCCcEEEEe
Q 012479 180 DLVLLLISDAA----QADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 180 DvViLavpd~a----~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|+|+.+|+... ...+++ ...++||+.|.-.
T Consensus 225 DIVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~i 258 (379)
T PRK06199 225 DIVTYCNSGETGDPSTYPYVK--REWVKPGAFLLMP 258 (379)
T ss_pred CEEEEccCCCCCCCCcCcEec--HHHcCCCcEEecC
Confidence 99999997432 123443 2357899877643
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00083 Score=66.85 Aligned_cols=93 Identities=19% Similarity=0.123 Sum_probs=60.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc---CceecCCCcCCHhh-hhccCCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~e-av~~ADvVi 183 (462)
.++ +++.|+|.|.+|.+++..|.+. |.+|++.+|...+..+.+++. |... ..+..+ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 457 8999999999999999999988 888888887655544444432 2211 122332 346899999
Q ss_pred EeecchhHHHHHH-HH-HhcCCCCcEEEEe
Q 012479 184 LLISDAAQADNYE-KI-FSCMKPNSILGLS 211 (462)
Q Consensus 184 Lavpd~a~~~vl~-eI-~~~Lk~gaiL~~a 211 (462)
.++|.....++-+ .+ ...++++.++.|+
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999753321100 00 2235666666655
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.015 Score=57.43 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC--C--------CcCCHhhhhccCCeEEEeecchh
Q 012479 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 121 ~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d--~--------~~~~~~eav~~ADvViLavpd~a 190 (462)
.||..+|..|.++ |++|.+..|. +..+.-++.|+...+ + ...++++ ....|+||++||-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3788999999998 8888877774 334455556754311 1 0112333 568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEE-EEeccch
Q 012479 191 QADNYEKIFSCMKPNSIL-GLSHGFL 215 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL-~~a~G~~ 215 (462)
..++++.+.|++.++++| .+.-|+.
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g 97 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLG 97 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCC
Confidence 999999999999988765 4556774
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.001 Score=66.57 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=55.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCc-CCHhhhhccCCeEEE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~-~~~~eav~~ADvViL 184 (462)
.+++ +++.|||.|-+|.+++..|.+. | .+|++..|+..+..+.+.+.+-.. .-.. .+..+.+.++|+||.
T Consensus 120 ~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLIIN 191 (278)
T ss_pred CCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEEE
Confidence 4778 9999999999999999999988 8 488888887655555555433110 0001 133467789999999
Q ss_pred eecchhH
Q 012479 185 LISDAAQ 191 (462)
Q Consensus 185 avpd~a~ 191 (462)
+||....
T Consensus 192 aTp~g~~ 198 (278)
T PRK00258 192 ATSAGMS 198 (278)
T ss_pred CCcCCCC
Confidence 9997654
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0039 Score=54.83 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=56.9
Q ss_pred CEEEEEc----ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG----~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
|+|+||| -+..|.-+..+|++. |++|+--+.+. . .-.|... ..++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~-~-----~i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKG-G-----EILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTC-S-----EETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCc-e-----EECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 688899999999998 98865443332 1 1145553 6778874478999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++...++++++... ..+.++...+..
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~~ 90 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcchH
Confidence 99999999997654 344455555543
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0042 Score=63.04 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=46.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc-------Cc--eecCCCcCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GF--TEENGTLGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~-------G~--~~~d~~~~~~~eav~~AD 180 (462)
+||+|||.|.+|.++|..|... |+ ++++.++..++....+.+. +. .. ...+ .+.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~-~~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGD-YSDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCC-HHHhCCCC
Confidence 5899999999999999999988 74 6777776554433333321 11 11 1223 34578999
Q ss_pred eEEEeecc
Q 012479 181 LVLLLISD 188 (462)
Q Consensus 181 vViLavpd 188 (462)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99999975
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0036 Score=61.20 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=63.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc---EEEEEecCC----chh-------HHHHHHcCceecCCCcCC
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~~----~~s-------~~~A~~~G~~~~d~~~~~ 171 (462)
..+++ ++|.|+|.|.+|.+++..|.+. |. ++++.+|++ .+. .+.++..+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 35788 9999999999999999999988 86 477777762 221 33444433211 0136
Q ss_pred HhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
..++++++|+||-++|+.... +++...|.++.+|.+..
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence 778889999999999865543 23444455676665443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0012 Score=68.56 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=70.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-H-cCceecCCCcCCHhhh---hccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-A-AGFTEENGTLGDIYET---ISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-~-~G~~~~d~~~~~~~ea---v~~ADvViLav 186 (462)
..||.||++.||+++++|+.+. |+.|.+++|..++.-+... + .|.... ...+++|. ++.--+|||++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~--ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKII--GAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCccc--CCCCHHHHHHhcCCCcEEEEEe
Confidence 4699999999999999999999 9999999998765443222 1 132210 14577776 46778999999
Q ss_pred cchhHHH-HHHHHHhcCCCCcEEEEec
Q 012479 187 SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 187 pd~a~~~-vl~eI~~~Lk~gaiL~~a~ 212 (462)
+...-.+ +++++.|+|.+|.+|++-+
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGG 105 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGG 105 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCC
Confidence 9777765 6678999999999988765
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0038 Score=64.57 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-ceec-CCCcCCHh-hhhccCCeEEEee
Q 012479 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~-d~~~~~~~-eav~~ADvViLav 186 (462)
|+||+|||. |.+|..+++.|.+. .+++++...++.+.....+...+ +... +..+.+.+ +..+++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 379999997 99999999999865 14455443433222112222222 1100 00122222 2457899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|+..+.++..++.. .|..|+|.++
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~ 100 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSA 100 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999888887643 5887887766
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0036 Score=65.94 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=61.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--------------CC---CcCCHhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------d~---~~~~~~e 174 (462)
|||+|||.|-.|...+..|.+. |++|+. .+.++.-.+. ...|..+. ++ .+.|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~-vDid~~KV~~-ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVC-VDIDESKVEL-LNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEE-EeCCHHHHHH-HhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 7899999999999999999998 988754 4443322222 12222110 00 1467889
Q ss_pred hhccCCeEEEeecch----------hHHHHHHHHHhcCCCCcEEE
Q 012479 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 175 av~~ADvViLavpd~----------a~~~vl~eI~~~Lk~gaiL~ 209 (462)
+++++|++|||||.. .+..+.++|.++++..++|+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV 117 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV 117 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE
Confidence 999999999999732 12346678999997766654
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0054 Score=62.88 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=44.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH-------cC--ceecCCCcCCHhhhhc
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AG--FTEENGTLGDIYETIS 177 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~-------~G--~~~~d~~~~~~~eav~ 177 (462)
.|. +||+|||.|++|.+++..+... |+ ++++.+.+.+.....+.+ .+ ... ....+.+ +++
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i--~~~~d~~-~l~ 72 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI--LGTNNYE-DIK 72 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEE--EeCCCHH-HhC
Confidence 456 8999999999999999999887 74 655555443322222211 11 111 0023444 789
Q ss_pred cCCeEEEee
Q 012479 178 GSDLVLLLI 186 (462)
Q Consensus 178 ~ADvViLav 186 (462)
+||+||++.
T Consensus 73 ~ADiVVita 81 (319)
T PTZ00117 73 DSDVVVITA 81 (319)
T ss_pred CCCEEEECC
Confidence 999999999
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0024 Score=65.53 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=62.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc----CceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|+|||+|.||.+++..+.... ++ +|.++.|..++..+.+++. |+.. ....+.++++.+||+|+.+|
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 89999999999999999998630 44 6777877766555555432 4431 11467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|... .+++. ..+++|+.|...+
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~vg 227 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTAMG 227 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEeeC
Confidence 8642 33332 2367887665443
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0034 Score=66.27 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=58.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcC---c--eecCC-CcCCHhhhhccCCeEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F--TEENG-TLGDIYETISGSDLVL 183 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G---~--~~~d~-~~~~~~eav~~ADvVi 183 (462)
|++|.|||+|.+|.++|..|.++ + .+|.+..|+.++ .+++...+ + ...|. ......+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 58999999999999999999988 6 689999887554 33333332 1 11011 0123457899999999
Q ss_pred EeecchhHHHHHHH
Q 012479 184 LLISDAAQADNYEK 197 (462)
Q Consensus 184 Lavpd~a~~~vl~e 197 (462)
.|.|+.....+++.
T Consensus 74 n~~p~~~~~~i~ka 87 (389)
T COG1748 74 NAAPPFVDLTILKA 87 (389)
T ss_pred EeCCchhhHHHHHH
Confidence 99999988877753
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0058 Score=55.42 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=45.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc-------CceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||. |+.|.++|..|... ++ ++++.++...+....+.+. +... ....+..+.+++||+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence 69999999 99999999999988 65 6655555533333333321 1100 002245678899999
Q ss_pred EEEeec
Q 012479 182 VLLLIS 187 (462)
Q Consensus 182 ViLavp 187 (462)
|+++.-
T Consensus 73 vvitag 78 (141)
T PF00056_consen 73 VVITAG 78 (141)
T ss_dssp EEETTS
T ss_pred EEEecc
Confidence 999873
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.003 Score=64.16 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| ++|.|||.|. +|..+|.-|... |..|++..++ +.+..+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~-------------------t~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSR-------------------SKDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHHhhCCEEEE
Confidence 46899 9999999988 999999999988 8888877642 1256788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-.. ++.. ..+++|++|+|++
T Consensus 208 Avg~p~---~i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 208 AVGKPG---LVTK--DVVKEGAVIIDVG 230 (286)
T ss_pred CCCCCc---ccCH--HHcCCCcEEEEcC
Confidence 998643 2321 3478999888875
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0026 Score=64.59 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~m-G~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| ++|.|||.|.. |..++.-|... |..|.+.... +.+..+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence 45799 99999999988 99999999988 8877764211 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-.. ++.. .++|+|++|++++
T Consensus 208 avG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred cCCCcC---ccCH--HHcCCCCEEEEcc
Confidence 999432 3432 5689999888764
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0031 Score=53.36 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=55.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavpd~ 189 (462)
.+|.|+|+|+.|.+++..+.+. . |+.+....+.+++.... +-.|+.. ..++.++.+. .|+.+|++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G~-~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIGK-EIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTTS-EETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccCc-EECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5899999999999999766654 2 44433333333321111 1135553 3377777766 99999999999
Q ss_pred hHHHHHHHHHh-cCCCCcEEEEec
Q 012479 190 AQADNYEKIFS-CMKPNSILGLSH 212 (462)
Q Consensus 190 a~~~vl~eI~~-~Lk~gaiL~~a~ 212 (462)
...++..++.. .+|. ++.++.
T Consensus 74 ~a~~~~~~~~~~gIk~--i~nft~ 95 (96)
T PF02629_consen 74 AAQEVADELVEAGIKG--IVNFTP 95 (96)
T ss_dssp HHHHHHHHHHHTT-SE--EEEESS
T ss_pred HHHHHHHHHHHcCCCE--EEEeCC
Confidence 98888887544 3322 555554
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.003 Score=68.28 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=52.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.+++ ++++|||.|.+|.+++..|.+. |.++++.+|...+..+.+...+.... ...+.. .+.++|+||+++
T Consensus 329 ~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~~--~~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 329 PLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKAF--PLESLP-ELHRIDIIINCL 398 (477)
T ss_pred CcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhcccee--chhHhc-ccCCCCEEEEcC
Confidence 4677 8999999999999999999998 88888887765544444444332210 011222 257899999999
Q ss_pred cchh
Q 012479 187 SDAA 190 (462)
Q Consensus 187 pd~a 190 (462)
|+..
T Consensus 399 P~g~ 402 (477)
T PRK09310 399 PPSV 402 (477)
T ss_pred CCCC
Confidence 9875
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.016 Score=49.57 Aligned_cols=94 Identities=21% Similarity=0.207 Sum_probs=60.8
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh---h-hhccCCeEEEeecch
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLISDA 189 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---e-av~~ADvViLavpd~ 189 (462)
|.|+|+|.+|..+++.|++. +.++++.. .+.+..+.+++.|+..-.+...+.+ + -+++||.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid-~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVID-RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEE-SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEE-CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 77776554 4456678888888654222223322 1 368899999999987
Q ss_pred hHHHHHHH-HHhcCCCCcEEEEeccc
Q 012479 190 AQADNYEK-IFSCMKPNSILGLSHGF 214 (462)
Q Consensus 190 a~~~vl~e-I~~~Lk~gaiL~~a~G~ 214 (462)
..--.+-. +........++..+..-
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 66543333 33333334456655543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0075 Score=61.45 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=44.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc--Cceec---CCCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEE---NGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~--G~~~~---d~~~~~~~eav~~ADvViL 184 (462)
|||+|||.|.+|.++|..|... |+ ++++.++...+....+.+. ..... .-...+ .+.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d-~~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGD-YADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCC-HHHhCCCCEEEE
Confidence 5899999999999999999988 74 5655555433222222221 11000 000123 356899999999
Q ss_pred eecc
Q 012479 185 LISD 188 (462)
Q Consensus 185 avpd 188 (462)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9985
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.008 Score=61.79 Aligned_cols=69 Identities=22% Similarity=0.215 Sum_probs=43.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCch----hHHHHHH---cC--ceecCCCcCCHhhhhc
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR----SFAEARA---AG--FTEENGTLGDIYETIS 177 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~----s~~~A~~---~G--~~~~d~~~~~~~eav~ 177 (462)
++. +||+|||.|+||.++|..+... |+ ++++.+..... ..+.... .+ .... ...+. ++++
T Consensus 4 ~~~-~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~ 73 (321)
T PTZ00082 4 IKR-RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIA 73 (321)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhC
Confidence 345 7999999999999999998877 76 65555443332 1222111 11 1110 12344 6789
Q ss_pred cCCeEEEee
Q 012479 178 GSDLVLLLI 186 (462)
Q Consensus 178 ~ADvViLav 186 (462)
+||+||++.
T Consensus 74 ~aDiVI~ta 82 (321)
T PTZ00082 74 GSDVVIVTA 82 (321)
T ss_pred CCCEEEECC
Confidence 999999966
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=57.83 Aligned_cols=82 Identities=18% Similarity=0.099 Sum_probs=57.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-HcCceec--CCCc-CCHhhh-hccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE--NGTL-GDIYET-ISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~--d~~~-~~~~ea-v~~ADvViLav 186 (462)
|+|.|||+|..|.++|+.|.+. |++|++-++..+...+.+. +.+.... |.+- ..+.++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 9988777665444333222 2333211 1111 124455 78899999999
Q ss_pred cchhHHHHHHHHH
Q 012479 187 SDAAQADNYEKIF 199 (462)
Q Consensus 187 pd~a~~~vl~eI~ 199 (462)
....+.-++-.++
T Consensus 75 ~~d~~N~i~~~la 87 (225)
T COG0569 75 GNDEVNSVLALLA 87 (225)
T ss_pred CCCHHHHHHHHHH
Confidence 9988887776654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0099 Score=62.59 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=53.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-cCceec--CCC-cCCHhhh-hccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEE--NGT-LGDIYET-ISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~--d~~-~~~~~ea-v~~ADvViLav 186 (462)
|+|.|+|+|.+|.++++.|++. |+++++..++ ....+.+++ .|+... |.+ ....+++ ++++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~-~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTD-EERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECC-HHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 8888766554 333444443 454221 111 1123445 78999999999
Q ss_pred cchhHHHHHHH
Q 012479 187 SDAAQADNYEK 197 (462)
Q Consensus 187 pd~a~~~vl~e 197 (462)
++......+..
T Consensus 74 ~~~~~n~~~~~ 84 (453)
T PRK09496 74 DSDETNMVACQ 84 (453)
T ss_pred CChHHHHHHHH
Confidence 98766554443
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0089 Score=57.49 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=57.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-ceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~eav~~ADvViL 184 (462)
-.++| ++|.|||.|.+|...++.|.+. |.+|++..+.-.+........| +.. ..... .++-+.++|+||.
T Consensus 6 l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~-~~~~~-~~~~l~~adlVia 76 (202)
T PRK06718 6 IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRW-KQKEF-EPSDIVDAFLVIA 76 (202)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEE-EecCC-ChhhcCCceEEEE
Confidence 45899 9999999999999999999998 8877776554333322222333 221 10111 1335789999999
Q ss_pred eecchhHHHHHHHHH
Q 012479 185 LISDAAQADNYEKIF 199 (462)
Q Consensus 185 avpd~a~~~vl~eI~ 199 (462)
+|.+...-..+.+..
T Consensus 77 aT~d~elN~~i~~~a 91 (202)
T PRK06718 77 ATNDPRVNEQVKEDL 91 (202)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999988766555443
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0064 Score=62.71 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=53.2
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||||||+|.++. .++..+....+ +++++...+.+.+..+.+.+.+... ...+.+|+++ +.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~----~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKD----SWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCC----CEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCCc
Confidence 5899999999764 45555543210 4566544444444345555565321 1568899885 57999999999
Q ss_pred hhHHHHHHHHH
Q 012479 189 AAQADNYEKIF 199 (462)
Q Consensus 189 ~a~~~vl~eI~ 199 (462)
..+.++..+..
T Consensus 75 ~~H~~~~~~al 85 (344)
T PRK10206 75 DSHFEYAKRAL 85 (344)
T ss_pred hHHHHHHHHHH
Confidence 99988776543
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0082 Score=61.60 Aligned_cols=83 Identities=10% Similarity=0.153 Sum_probs=54.7
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhhc--cCCeEEEeec
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav~--~ADvViLavp 187 (462)
.||||||+|.+|. .++..++.. .+++++...+.+.+.. +.+. +... ..+.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~~--~~~~~~~~~----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATKV--KADWPTVTV----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHHH--HhhCCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999998 467777654 1566554444433222 2223 2322 568899885 5799999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE
Q 012479 188 DAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL 208 (462)
+..+.++..+.+ +.|+.|
T Consensus 74 ~~~H~~~~~~al---~aGkhV 91 (346)
T PRK11579 74 NDTHFPLAKAAL---EAGKHV 91 (346)
T ss_pred cHHHHHHHHHHH---HCCCeE
Confidence 999988776543 345543
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0085 Score=49.50 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=47.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..+++ ++++|+|.|.+|..++..|.+. +. ++.+++| |++|-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 34778 9999999999999999999987 53 5555443 99999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+++...... ++....++++.+|.+.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998644432 2234556788877654
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.012 Score=59.32 Aligned_cols=92 Identities=17% Similarity=0.124 Sum_probs=59.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh-hccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea-v~~ADvViLavpd~a 190 (462)
+||||||||.||..++..|.+.. ..++++...+++.....+... ..... +.+++++ ..+.|+|+=|-++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~~-~~~~~----~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPALA-GRVAL----LDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHhh-ccCcc----cCCHHHHhhcCCCEEEECCCHHH
Confidence 79999999999999999987530 002444433444332222221 12332 6788885 688999999999988
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccc
Q 012479 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~ga-iL~~a~G~ 214 (462)
..+....+. +.|. +++.+-|-
T Consensus 75 v~e~~~~iL---~~g~dlvv~SvGA 96 (267)
T PRK13301 75 IAEHAEGCL---TAGLDMIICSAGA 96 (267)
T ss_pred HHHHHHHHH---hcCCCEEEEChhH
Confidence 888777664 3444 45555453
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.013 Score=59.65 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=67.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeecc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavpd 188 (462)
.||.|.|. |++|..+.++|++. |+++++...+..-. .+-.|+.. ..++.|+-+. .|++++++|+
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~---~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp~ 75 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG---TTVLGLPV----FNTVAEAVEATGANASVIYVPP 75 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC---CeEeCeec----cCCHHHHhhccCCCEEEEEcCH
Confidence 68999995 88999999999988 77644344432000 12247764 6688887776 8999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchHH
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~ 217 (462)
....+++++... ..-+.++++++||...
T Consensus 76 ~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 76 PFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 999999998654 2334578899999753
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0092 Score=57.29 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=64.2
Q ss_pred CCEEEEEcccchHHHHHHHHH--HhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEee
Q 012479 111 INQIGVIGWGSQGPAQAQNLR--DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lr--ds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLav 186 (462)
+.++.|||+|++|+|++..-- +. |++++...+.++...-.-. .++.+. ...++++.++ +.|+.||+|
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~~~-~~v~V~--~~d~le~~v~~~dv~iaiLtV 154 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGTKI-GDVPVY--DLDDLEKFVKKNDVEIAILTV 154 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCccc-CCeeee--chHHHHHHHHhcCccEEEEEc
Confidence 378999999999999885322 33 7788777776554221111 223321 1344566676 789999999
Q ss_pred cchhHHHHHHHHHhc-CCCCcEEEEeccchHHHhhhccccCCCCccEEe
Q 012479 187 SDAAQADNYEKIFSC-MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIA 234 (462)
Q Consensus 187 pd~a~~~vl~eI~~~-Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~ 234 (462)
|-....++.+.+... +| .+|-|+.. + +..|+++.|.-
T Consensus 155 Pa~~AQ~vad~Lv~aGVk--GIlNFtPv----~-----l~~pe~V~V~~ 192 (211)
T COG2344 155 PAEHAQEVADRLVKAGVK--GILNFTPV----R-----LQVPEGVIVEN 192 (211)
T ss_pred cHHHHHHHHHHHHHcCCc--eEEeccce----E-----ecCCCCcEEEE
Confidence 988777777765432 32 25665543 2 24466666544
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0068 Score=61.51 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=64.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHh--hhhccCCeE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLV 182 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~--eav~~ADvV 182 (462)
...+| +++.|+|.|=.+.|++..|.+. |. +++|.+|+.++..+.+...+-........... +..+++|+|
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dli 194 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLL 194 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEE
Confidence 34567 9999999999999999999999 86 78999998777777766654110000011111 222269999
Q ss_pred EEeecchhHHHH----HHHHHhcCCCCcEEEEe
Q 012479 183 LLLISDAAQADN----YEKIFSCMKPNSILGLS 211 (462)
Q Consensus 183 iLavpd~a~~~v----l~eI~~~Lk~gaiL~~a 211 (462)
|.+||....... +. ...++++.++.|+
T Consensus 195 INaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 195 INATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred EECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 999997665432 11 3345666666654
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0063 Score=61.67 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=57.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.|. .|.+++..|.+. |..|.+..++ ..+..+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 46899 9999999997 999999999988 8788777652 1245566789999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++... .+. ...+++|++|+|+.
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 996222 232 24578999988764
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.011 Score=61.31 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=58.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceec--CCCc--CCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~--d~~~--~~~~eav~~ADvViLa 185 (462)
+||+|||. |.+|..+++.|.+. .+++++ +..++.+.........+.... +..+ .+.++..+++|+||+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 58999998 99999999999854 134555 322221111111111221000 0001 2455666789999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+|.....++..++.. .|..|+|.++.
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 999998888877643 57777777663
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0053 Score=61.84 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=55.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCc---CCHhhhhccCCeE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV 182 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~---~~~~eav~~ADvV 182 (462)
.++| +++.|||.|-+|.+++..|.+. |. +|.|.+|..++..+.+...+....-... .+..+++.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 4678 9999999999999999999988 87 6888888766666666554321000001 1223556889999
Q ss_pred EEeecchh
Q 012479 183 LLLISDAA 190 (462)
Q Consensus 183 iLavpd~a 190 (462)
|.+||...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999754
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.011 Score=59.66 Aligned_cols=64 Identities=31% Similarity=0.325 Sum_probs=40.2
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHH---Hc----Cc--eecCCCcCCHhhhhccCCeEE
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AA----GF--TEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~---~~----G~--~~~d~~~~~~~eav~~ADvVi 183 (462)
|+|||.|+||..+|..|... |+ +|++.+...+.....+. .. +. .. ....+ .+++++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I--~~t~d-~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV--TGTND-YEDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE--EEcCC-HHHhCCCCEEE
Confidence 68999999999999999877 65 77666554332111111 11 10 11 00234 45689999999
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 977
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0099 Score=61.11 Aligned_cols=95 Identities=20% Similarity=0.125 Sum_probs=64.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--CCCcCCHhhhhccCCeEEEee--c
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGDIYETISGSDLVLLLI--S 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~~~~~~eav~~ADvViLav--p 187 (462)
-||.|||.|..|..-|+-...- |-+|.+.+.+..+....-...|.... -.+...++++++++|+||-++ |
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4899999999999877765543 66888887765443333333343210 112335788999999999665 5
Q ss_pred chhHHH-HHHHHHhcCCCCcEEEEec
Q 012479 188 DAAQAD-NYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 188 d~a~~~-vl~eI~~~Lk~gaiL~~a~ 212 (462)
-...+. +.+++...||||++|+|++
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 444455 4457888999999987664
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.037 Score=50.43 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=69.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhccCCeEEEeec
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~~ADvViLavp 187 (462)
++ ++|.+||+| -|.++|..|.+. |++|+ +.+.++...+.+++.+.... ++-.....+.-+++|+|-=.-|
T Consensus 16 ~~-~kileIG~G-fG~~vA~~L~~~------G~~Vi-aIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KN-KKIVELGIG-FYFKVAKKLKES------GFDVI-VIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cC-CEEEEEEec-CCHHHHHHHHHC------CCEEE-EEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56 889999999 899999999988 98875 55666667788888776321 2223334567899999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEe
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|.....-+-+++..+...-+|.-.
T Consensus 87 p~el~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 87 PRDLQPFILELAKKINVPLIIKPL 110 (134)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 887777666777766555455433
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.022 Score=57.93 Aligned_cols=91 Identities=15% Similarity=0.277 Sum_probs=68.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeecc
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavpd 188 (462)
.+|.|.| .|.+|..+-.+|+.. |.+++.+..++ +. ..+-.|+.. ..++.|+-+. .|++++++|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KG--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CC--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6899999 799999999999988 88866665543 11 112357764 6688887765 6999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
....+++++... ..-..++++++||..
T Consensus 74 ~~v~~~l~e~~~-~Gvk~avIis~Gf~e 100 (286)
T TIGR01019 74 PFAADAIFEAID-AGIELIVCITEGIPV 100 (286)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCH
Confidence 999999998654 223457889999964
|
ATP citrate lyases appear to form an outgroup. |
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.014 Score=59.82 Aligned_cols=137 Identities=22% Similarity=0.206 Sum_probs=94.4
Q ss_pred hhhhccccCccccccccchhhhhhhhccccccceeecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcC
Q 012479 60 MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS 139 (462)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~ 139 (462)
|.+.-.++-|. .+-|-++-+.|--+|-|-.|.++-+ -.+.- --.+.| |.+.|-|||..|..-|+.||..
T Consensus 168 m~k~G~L~VPA-iNVNDSVTKsKFDnLygcreSl~Dg--ikraT-DvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------ 236 (434)
T KOG1370|consen 168 MSKNGKLKVPA-INVNDSVTKSKFDNLYGCRESLLDG--IKRAT-DVMIAG-KVAVVCGYGDVGKGCAQALKGF------ 236 (434)
T ss_pred HHhCCceecce-eeccchhhhhhccccccchhhhhhh--hhhhh-hheecc-cEEEEeccCccchhHHHHHhhc------
Confidence 44443333333 5667777777777777766644321 01111 244566 8888999999999999999987
Q ss_pred CcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 140 DIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 140 G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|-.|+|..-..-..+ +|.-.|+. +.+.+|+++++|+++-++--..+ +..+.+..||.++||+-.+-|.
T Consensus 237 g~~VivTEiDPI~AL-QAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 237 GARVIVTEIDPICAL-QAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred CcEEEEeccCchHHH-HHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 878887654433333 44446898 57899999999999998875433 3457788899999998666554
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.015 Score=63.47 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=65.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--C----C-------CcCC-------
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-------TLGD------- 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--d----~-------~~~~------- 171 (462)
.|+.|||+|.+|...++.++.. |.+|++.+++ ....+.++..|.... + + +..+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 7999999999999999999988 8877665554 446788888876520 0 0 0001
Q ss_pred ---HhhhhccCCeEEEee--cchhHHH-HHHHHHhcCCCCcEEEEec
Q 012479 172 ---IYETISGSDLVLLLI--SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 172 ---~~eav~~ADvViLav--pd~a~~~-vl~eI~~~Lk~gaiL~~a~ 212 (462)
..+.++++|+||.++ |-..... +.++....||+|.+|+|.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345578999999988 2111222 3346778899999988764
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.027 Score=57.77 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc--------CceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--------GFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~--------G~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|.+|.++|..|... |+ ++.+.+.........+.+. .... ..+..+.+++||+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i----~~~~~~~~~~adi 76 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI----YAGDYSDCKDADL 76 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE----EeCCHHHhCCCCE
Confidence 7999999999999999999988 76 5666555433322222221 1111 1233456899999
Q ss_pred EEEeec
Q 012479 182 VLLLIS 187 (462)
Q Consensus 182 ViLavp 187 (462)
||++.-
T Consensus 77 vIitag 82 (315)
T PRK00066 77 VVITAG 82 (315)
T ss_pred EEEecC
Confidence 999764
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.041 Score=50.20 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=49.4
Q ss_pred EEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---HhhhhccCCeEEEeecc
Q 012479 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (462)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvViLavpd 188 (462)
|.|+|. |.+|..+++.|.++ |++|++..|+.++..+ ..++........+ ..++++++|.||.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 789995 99999999999999 9999888887655443 4454332222334 35678899999999984
|
... |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.011 Score=69.35 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=54.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhc---------CCcEEEEEecCCchhHHHHHHc-Cc--eecCCCcCCHhh--
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE-- 174 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g---------~G~~Vivg~r~~~~s~~~A~~~-G~--~~~d~~~~~~~e-- 174 (462)
+.+++|+|||+|.+|..++..|.+. .+.. .+..|.|+++...+..+.+... ++ ...| +.+.++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~ 643 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLL 643 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHH
Confidence 3348999999999999999999865 1000 0113666665433333334333 42 1101 345444
Q ss_pred -hhccCCeEEEeecchhHHHHHHH
Q 012479 175 -TISGSDLVLLLISDAAQADNYEK 197 (462)
Q Consensus 175 -av~~ADvViLavpd~a~~~vl~e 197 (462)
+++++|+|+.|+|+..+.++...
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHHH
Confidence 44689999999999988887764
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.018 Score=58.50 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=59.0
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| ++|.|||.|. .|..++.-|... |..|.+..+. +.++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 9999999998 999999999887 7788776432 2367788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++++|++|++++
T Consensus 209 avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---cc--HHHcCCCcEEEEcc
Confidence 9953222 22 15678999988875
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.019 Score=52.40 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=56.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| ++|.|||-+ ..|..++.-|.+. |..|.+..++ ..+.++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 46889 999999966 7889999999887 8887766432 1256788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
++.-.. +++ ...+|||++|.+.
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidv 99 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINC 99 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEc
Confidence 998652 233 3458999987754
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.01 Score=63.21 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=48.3
Q ss_pred CEEEEEcccchHHHHHH--HHHHhhhhhcCCcEEEEEecCCchhHHHHHH--------cCceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------AGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~--~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~--------~G~~~~d~~~~~~~eav~~ADv 181 (462)
.||+|||.|++|.+.+. .+..... -.|.+|++.++..+ ..+.... .+....=..+.|..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~--~~g~eV~L~Did~e-~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPE--LSGSTIALMDIDEE-RLETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCC--CCCCEEEEECCCHH-HHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 48999999999998766 4532100 11557776655433 2222111 1110000014577899999999
Q ss_pred EEEeecchhHHHHHH
Q 012479 182 VLLLISDAAQADNYE 196 (462)
Q Consensus 182 ViLavpd~a~~~vl~ 196 (462)
||.+++........+
T Consensus 78 Vi~ai~~~~~~~~~~ 92 (423)
T cd05297 78 VINTIQVGGHEYTET 92 (423)
T ss_pred EEEeeEecCccchhh
Confidence 999999765544433
|
linked to 3D####ucture |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.02 Score=53.03 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=58.3
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCC
Q 012479 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 101 f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
||.. -.|+| ++|.|||.|.+|...++.|.+. |.+|.+....- ..+......+.. +...... +-++++|
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~~--~~~l~~l~~i~~-~~~~~~~-~dl~~a~ 72 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPEI--CKEMKELPYITW-KQKTFSN-DDIKDAH 72 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCcc--CHHHHhccCcEE-EecccCh-hcCCCce
Confidence 5555 67899 9999999999999999999998 88877663321 122211112221 1111222 2368899
Q ss_pred eEEEeecchhHHHHHHHHHh
Q 012479 181 LVLLLISDAAQADNYEKIFS 200 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~ 200 (462)
+||.+|.+...-..+.....
T Consensus 73 lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 73 LIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 99999999887766655543
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.013 Score=60.99 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=61.8
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
..++| ++|.|+|. |.||..+++.|... .|. ++++..|...+....+.+.+.. ...+..+++.++|+|+
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~-----~gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAK-----TGVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIVV 220 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhh-----CCCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEEE
Confidence 36888 99999998 89999999999743 043 6666666544444445543311 1346778999999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
.++...... ++.. ..++++.+++|.+
T Consensus 221 ~~ts~~~~~-~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 221 WVASMPKGV-EIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred ECCcCCcCC-cCCH--HHhCCCeEEEEec
Confidence 998743221 1110 2346777777664
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0095 Score=57.36 Aligned_cols=81 Identities=10% Similarity=0.203 Sum_probs=51.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavpd~ 189 (462)
++|+|||+|.+|.+++..+... + .|++++...+.++..... ...|+.. ....+..+.+++ .|+|++++|+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~-~i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGT-KIGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCC-EeCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 6899999999999999864321 1 167766555543321111 1123321 013356677654 99999999999
Q ss_pred hHHHHHHHHH
Q 012479 190 AQADNYEKIF 199 (462)
Q Consensus 190 a~~~vl~eI~ 199 (462)
.+.++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9887776554
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.036 Score=59.46 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=66.9
Q ss_pred CEEEEEcc----cchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
++|+|||. |+.|.-+.++|++. |+ +|+ ....... +-.|+.. ..+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~-~Vnp~~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIY-PVNPKAG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEE-EECCCCC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999988 76 453 3333221 2357664 56788887788999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
+|++...+++++... ..-..+|++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999998765 34455788899984
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.053 Score=51.82 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=51.3
Q ss_pred EEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-hHHHHHHcCceecCCCcC---CHhhhhccCCeEEEeecc
Q 012479 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (462)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-s~~~A~~~G~~~~d~~~~---~~~eav~~ADvViLavpd 188 (462)
|.|+|. |.+|.+++..|.+. +++|.+..|+..+ ..+..+..|......... ++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789995 99999999999998 8999888887533 344556677753222222 345689999999999993
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.046 Score=56.44 Aligned_cols=115 Identities=12% Similarity=0.183 Sum_probs=80.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCc--hhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEee
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLav 186 (462)
.||-|-|. |.+|.-+++.+++. |-+|+.|..+.. +... ..|+.. ..++.|+.+. +|+.++++
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 68999994 99999999999999 989988887643 3221 126664 6789999887 99999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHHH---hhhccccCCCCccEEecccCCCchh
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~---~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
|+....+.+.|.... .-..+|+++.||.... +++ ...-..++.+|+ ||+||-.
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe~d~~~l~~-~~~~~~g~rliG--PNc~Gii 152 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQHDMVKVKH-ALLSQNKTRLIG--PNCPGII 152 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCchhhHHHHHH-HHhhcCCCEEEC--CCCceEE
Confidence 999999988875442 1234788999996432 221 111123455554 8887754
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.037 Score=47.35 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.++| ++|.|||.|..|..=++.|.+. |-+|++..... .. .+..+... ....++-+.++|+|++++
T Consensus 4 ~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~----~~-~~~~i~~~---~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI----EF-SEGLIQLI---RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE----HH-HHTSCEEE---ESS-GGGCTTESEEEE-S
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch----hh-hhhHHHHH---hhhHHHHHhhheEEEecC
Confidence 4788 9999999999999999999998 88887765542 11 11223221 123446688999999999
Q ss_pred cchhHHHHHH
Q 012479 187 SDAAQADNYE 196 (462)
Q Consensus 187 pd~a~~~vl~ 196 (462)
.+....+-+.
T Consensus 69 ~d~~~n~~i~ 78 (103)
T PF13241_consen 69 DDPELNEAIY 78 (103)
T ss_dssp S-HHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9877655443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.031 Score=61.15 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=66.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--CCCc-------------CCH
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTL-------------GDI 172 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~~-------------~~~ 172 (462)
..+ .||.|||.|.+|...++.++.. |.+|++. +.++...+.+++.|.... +..- .+.
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~-D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAF-DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEE-eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 346 8999999999999999999888 8876554 445666889999997510 1000 010
Q ss_pred --------hhhhccCCeEEEeecchh--HHHH-HHHHHhcCCCCcEEEEec
Q 012479 173 --------YETISGSDLVLLLISDAA--QADN-YEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 173 --------~eav~~ADvViLavpd~a--~~~v-l~eI~~~Lk~gaiL~~a~ 212 (462)
.+.++++|+||-++.-.. ...+ .++....||+|.+|++.+
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122357999999986322 2344 377778899999887664
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.045 Score=54.24 Aligned_cols=65 Identities=28% Similarity=0.315 Sum_probs=42.0
Q ss_pred EEEEcc-cchHHHHHHHHHHhhhhhcCC----cEEEEEecCCchhHHHHHH-------c-CceecCCCcCCHhhhhccCC
Q 012479 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA-------A-GFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s~~~A~~-------~-G~~~~d~~~~~~~eav~~AD 180 (462)
|+|||. |.+|..++..|... | .++++.+....+....+.+ . ..... ...|..+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~--~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS--ITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE--ECCchHHHhCCCC
Confidence 689999 99999999999987 6 4666655443322211111 1 11110 1345578999999
Q ss_pred eEEEee
Q 012479 181 LVLLLI 186 (462)
Q Consensus 181 vViLav 186 (462)
+||++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999955
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.024 Score=54.74 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=61.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCc--CC----Hhhhhcc
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~--~~----~~eav~~ 178 (462)
..++| |+|.|||-+ ..|..+|.-|.+. |..|.+...+............-. .+ .+ ..+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~hs----~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIRHE----KHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccccc----cccccchhhHHHHHhhh
Confidence 46899 999999977 7899999999888 878877643321111100000000 01 12 6788999
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
||+||.+++..... +. ...+|+|++|++++-
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi 157 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFAS 157 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcCC
Confidence 99999999965431 22 245789999998764
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.042 Score=51.40 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. |..|.+.... ..+.++.+++||+||.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence 35899 999999988 5999999999998 8777765332 1356778899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
++.-... ++ ...+|+|++|+|++-
T Consensus 86 a~G~~~~---i~--~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 86 AVGKPNL---IK--ADWIKPGAVVIDVGI 109 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--C
T ss_pred eeccccc---cc--cccccCCcEEEecCC
Confidence 9985332 22 346899998888753
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.057 Score=60.00 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=55.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh---h-hhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---e-av~~ADvViLavp 187 (462)
.+|.|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|...--+...+.+ + -+++||+|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 8887654 45566788888888643211122221 1 2679999999999
Q ss_pred chhHHH
Q 012479 188 DAAQAD 193 (462)
Q Consensus 188 d~a~~~ 193 (462)
+.....
T Consensus 474 d~~~n~ 479 (601)
T PRK03659 474 EPEDTM 479 (601)
T ss_pred CHHHHH
Confidence 976653
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.047 Score=52.32 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=30.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEec
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r 148 (462)
..|++ ++|.|||+|.+|..++++|... |+ ++.+.++
T Consensus 17 ~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~ 53 (202)
T TIGR02356 17 QRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDD 53 (202)
T ss_pred HHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecC
Confidence 67788 9999999999999999999998 87 5555543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.036 Score=54.09 Aligned_cols=77 Identities=17% Similarity=0.034 Sum_probs=48.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCceec-CC-CcCCHh
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE-NG-TLGDIY 173 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~-d~-~~~~~~ 173 (462)
..++| ++|+|.|+|+.|...|+.|.+. |..++...+.+. +..+..++.+-... .. ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 46789 9999999999999999999998 886555455544 44444444332210 00 000112
Q ss_pred hh-hccCCeEEEeecch
Q 012479 174 ET-ISGSDLVLLLISDA 189 (462)
Q Consensus 174 ea-v~~ADvViLavpd~ 189 (462)
+. -.+||+++-|.+..
T Consensus 92 ~l~~~~~DVlipaA~~~ 108 (217)
T cd05211 92 AILGLDVDIFAPCALGN 108 (217)
T ss_pred cceeccccEEeeccccC
Confidence 21 13678888777755
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.092 Score=50.66 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=55.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-ceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.|+| ++|.|||.|..|..-++.|.+. |.+|+|......+.+....+.| +....+. .. .+-+.++|+||++
T Consensus 6 ~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~-~~-~~dl~~~~lVi~a 76 (205)
T TIGR01470 6 NLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARC-FD-ADILEGAFLVIAA 76 (205)
T ss_pred EcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCC-CC-HHHhCCcEEEEEC
Confidence 4889 9999999999999999999998 8887776554333333333333 3321111 12 3457899999999
Q ss_pred ecchhHH-HHHHHH
Q 012479 186 ISDAAQA-DNYEKI 198 (462)
Q Consensus 186 vpd~a~~-~vl~eI 198 (462)
+.+...- .++...
T Consensus 77 t~d~~ln~~i~~~a 90 (205)
T TIGR01470 77 TDDEELNRRVAHAA 90 (205)
T ss_pred CCCHHHHHHHHHHH
Confidence 9987443 444443
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.04 Score=57.24 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=50.4
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCC-c-EEEEEecCCchhHHHHHH-c--CceecCCCcCC---HhhhhccCCeEEEe
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G-~-~Vivg~r~~~~s~~~A~~-~--G~~~~d~~~~~---~~eav~~ADvViLa 185 (462)
|.|||+|.+|..+++.|.+. + . +|+++.|+..+..+.+.+ . .+....-.+.+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 4 4 788888875554444432 1 22110001223 45688999999999
Q ss_pred ecchhHHHHHHH
Q 012479 186 ISDAAQADNYEK 197 (462)
Q Consensus 186 vpd~a~~~vl~e 197 (462)
+||.....+++.
T Consensus 75 ~gp~~~~~v~~~ 86 (386)
T PF03435_consen 75 AGPFFGEPVARA 86 (386)
T ss_dssp SSGGGHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999866666654
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.07 Score=58.55 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=53.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh---h-hhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---e-av~~ADvViLavp 187 (462)
..|-|+|+|.+|..+++.|++. |+++++-+ ++++..+.+++.|.....+...+.+ + -+++||.|+++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~------g~~vvvId-~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA------GIPLVVIE-TSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 3799999999999999999998 88876655 4455677788888643212222221 1 2578999999999
Q ss_pred chhHH
Q 012479 188 DAAQA 192 (462)
Q Consensus 188 d~a~~ 192 (462)
++...
T Consensus 491 ~~~~~ 495 (558)
T PRK10669 491 NGYEA 495 (558)
T ss_pred ChHHH
Confidence 87554
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.056 Score=56.13 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=49.8
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh-HHHHHHcCceec-----------CC---CcCCHhhhhcc
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-----------NG---TLGDIYETISG 178 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~-----------d~---~~~~~~eav~~ 178 (462)
|||+|+|.+|..+++.+... .+++++...+.+.+. ...|...|+... +. ...+++++.++
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 156665555543322 234443332110 00 03468888899
Q ss_pred CCeEEEeecchhHHHHH
Q 012479 179 SDLVLLLISDAAQADNY 195 (462)
Q Consensus 179 ADvViLavpd~a~~~vl 195 (462)
+|+|+.|+|......-.
T Consensus 76 vDiVve~Tp~~~~~~na 92 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK 92 (333)
T ss_pred CCEEEECCCCCCChhhH
Confidence 99999999987765433
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.033 Score=56.67 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=58.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|.|||-| ..|..+|.-|.+. |..|.+.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 46889 999999999 9999999999988 8787765321 1245678999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++..... +. ..++|+|++|++++
T Consensus 207 AvG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCCc---CC--HHHcCCCcEEEEee
Confidence 9975432 22 23568999988875
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.1 Score=54.96 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=57.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--CceecCCCcCCHh----hhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~d~~~~~~~----eav~~ADvViLa 185 (462)
++|.|+|+|..|..+++.|.+. |+++++..+. ++..+...+. ++....+...+.+ .-++++|.|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 8899999999999999999998 8888766554 3344444443 3321111112222 236789999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+++...--+...++..+.+..+++-+
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 98764433333333444444454433
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.038 Score=58.31 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=43.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
++|.|||+|.+|.++|+.|++. |.+|++.++... ..... +... +....+.+...+++|+||.+.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSLE-ALQSC---PYIH-ERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCcc-ccchh---HHHh-hhhcCCcHHHhcCCCEEEECCCCC
Confidence 8999999999999999999999 988766554322 22111 1110 000122333457899999887544
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.042 Score=55.76 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=58.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.+ ..|..+|.-|... |..|.+..++ ..++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~-------------------t~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSK-------------------TENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecC-------------------hhHHHHHHhhCCEEEE
Confidence 46899 999999999 9999999999877 7777776532 1356788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-. .++. ..++|+|++|+|++
T Consensus 202 Avgk~---~lv~--~~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFIT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccC--HHHcCCCcEEEEee
Confidence 99733 2333 12369999998875
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.051 Score=55.76 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=42.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH----cCceecCC-C-cCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENG-T-LGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~----~G~~~~d~-~-~~~~~eav~~ADvVi 183 (462)
+||+|||.|.+|.++|..|... |+ ++++.+.+.......+.+ ..+..... . ..+.+ .+++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEE
Confidence 6999999999999999999887 65 555555443322222222 21110000 1 24555 489999999
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.14 Score=52.88 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=42.8
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCCc------hhHHHHHHc-----CceecCCCc
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS------RSFAEARAA-----GFTEENGTL 169 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~~------~s~~~A~~~-----G~~~~d~~~ 169 (462)
|...||+|||. |.+|.++|..|... ++ +++..+.... ..++..... .... .
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~ 71 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----T 71 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----e
Confidence 34579999998 99999999988765 33 4444443211 122222211 1111 2
Q ss_pred CCHhhhhccCCeEEEeec
Q 012479 170 GDIYETISGSDLVLLLIS 187 (462)
Q Consensus 170 ~~~~eav~~ADvViLavp 187 (462)
.+..+.+++||+||++--
T Consensus 72 ~~~y~~~~daDiVVitaG 89 (326)
T PRK05442 72 DDPNVAFKDADVALLVGA 89 (326)
T ss_pred cChHHHhCCCCEEEEeCC
Confidence 345678999999998764
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.11 Score=50.06 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=59.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecC---Cc---------------hhHHHHHH----cC
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS---------------RSFAEARA----AG 161 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~---~~---------------~s~~~A~~----~G 161 (462)
...|+. ++|+|||+|.+|..+|.+|..+ |+ ++++.++. .+ +....++. ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 467788 9999999999999999999998 87 45555433 00 00000000 00
Q ss_pred -ceec--CCC--cCCHhhhhccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEEeccc
Q 012479 162 -FTEE--NGT--LGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 162 -~~~~--d~~--~~~~~eav~~ADvViLavpd~a~~~-vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.... +.. ..+..+.++++|+||-++-+..... +++++...++...+++ .+|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 1100 000 1123456888999999954434443 4566777665544444 5565
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.091 Score=58.71 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=55.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh----hhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----eav~~ADvViLavp 187 (462)
++|-|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|....-+...+.+ .-+++||+|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6899999999999999999998 8887654 55566677888888743211122221 23568999999999
Q ss_pred chhHHH
Q 012479 188 DAAQAD 193 (462)
Q Consensus 188 d~a~~~ 193 (462)
|.....
T Consensus 474 d~~~n~ 479 (621)
T PRK03562 474 DPQTSL 479 (621)
T ss_pred CHHHHH
Confidence 876653
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.049 Score=55.02 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=50.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCC---chhHHHHHHc---C--ceecCCCcC---CHhh
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIYE 174 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~d~~~~---~~~e 174 (462)
.++| +++.|+|.|-+|.+++..|.+. |.+ |.+.+|+. ++..+.+++. + ....-.... +..+
T Consensus 123 ~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 3677 8999999999999999999988 885 88888764 3333333322 1 010000011 2234
Q ss_pred hhccCCeEEEeecchhH
Q 012479 175 TISGSDLVLLLISDAAQ 191 (462)
Q Consensus 175 av~~ADvViLavpd~a~ 191 (462)
.++.+|+||.+||....
T Consensus 196 ~~~~~DilINaTp~Gm~ 212 (289)
T PRK12548 196 EIASSDILVNATLVGMK 212 (289)
T ss_pred hhccCCEEEEeCCCCCC
Confidence 56678999999987543
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.035 Score=57.33 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=45.7
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCC--chhHHHHHHc-CceecCCCc-CCHhhhhc
Q 012479 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAA-GFTEENGTL-GDIYETIS 177 (462)
Q Consensus 105 ~~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~--~~s~~~A~~~-G~~~~d~~~-~~~~eav~ 177 (462)
|..+|. +||+|||. |.+|.++|..|... ++ ++++.+... ...++..... .+...+.+. .+..++++
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~ 75 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR 75 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhC
Confidence 456777 99999999 99999999999865 43 555554421 1111211101 111101011 12267899
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
+||+||++.-
T Consensus 76 gaDvVVitaG 85 (321)
T PTZ00325 76 GADLVLICAG 85 (321)
T ss_pred CCCEEEECCC
Confidence 9999998764
|
|
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.24 Score=44.85 Aligned_cols=93 Identities=15% Similarity=0.221 Sum_probs=61.7
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH-HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 263 iav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL-~G~~paliea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
++++. +.++++.++.++..+|.. ++.. .+..--+||..+++ |+.+.+++....+.+.++|+++++|++.-.--
T Consensus 4 ~~iEg--d~~~~~~l~~l~~~lg~~-~~~i---~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PL 77 (132)
T PF10728_consen 4 FAIEG--DEEALEVLQELAKELGGR-PFEI---DSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPL 77 (132)
T ss_dssp EEEEE--SHHHHHHHHHHHHHTTSE-EEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHH
T ss_pred EEEec--CHHHHHHHHHHHHHhCCc-eEEe---CHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 34444 789999999999999985 3333 23334489999986 99999999999999999999999988754444
Q ss_pred HHHHHHHHHHHhcHHHHHHhcCCc
Q 012479 342 ITGIISKIISTQGMLAVYNSFSGE 365 (462)
Q Consensus 342 i~Gli~~li~e~G~~~m~~~vs~~ 365 (462)
+.+ ..+=+.+.|. .+.++.|
T Consensus 78 i~~-t~~n~~~~g~---~~alTGP 97 (132)
T PF10728_consen 78 IRE-TLENILQLGP---ADALTGP 97 (132)
T ss_dssp HHH-HHHHHHHS-H---HHH--SC
T ss_pred HHH-HHHHHHhcCc---hhccCCC
Confidence 443 3444445544 2445533
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.029 Score=52.02 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=62.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCC-----------------
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG----------------- 167 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~----------------- 167 (462)
+..+.. .+|.|+|.|+.|..-+.-+..- |.++++.+.. ....+.....+.....-
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 344555 7999999999999998888887 9988776554 33344444544321000
Q ss_pred -----CcCCHhhhhccCCeEEEe--ecchhHHHHHH-HHHhcCCCCcEEEEec
Q 012479 168 -----TLGDIYETISGSDLVLLL--ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 168 -----~~~~~~eav~~ADvViLa--vpd~a~~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
......+.++.+|+||.+ .|......++. +....|+++.+|+|.+
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 001245678999999963 35556666664 6777899999998774
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.17 Score=52.93 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=41.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH----cCceec-CCCc-CCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEE-NGTL-GDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~----~G~~~~-d~~~-~~~~eav~~ADvVi 183 (462)
+||+|||.|++|.++|..|... ++ ++++.+.........+.+ ..+... .-.. .+. +.+++||+||
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVV 110 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCI 110 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEE
Confidence 5999999999999999999877 65 455555433322222221 111100 0001 244 4489999999
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
++.
T Consensus 111 itA 113 (350)
T PLN02602 111 VTA 113 (350)
T ss_pred ECC
Confidence 984
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.14 Score=53.23 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=55.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC---------------------chhH---HHHHH
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~---------------------~~s~---~~A~~ 159 (462)
.+.|++ ++|.|||+|..|..+|.+|... |+ ++.+.++.. ++.. +..++
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 577888 9999999999999999999998 87 555544421 0111 11111
Q ss_pred --cCceec----CCCcCCHhhhhccCCeEEEeecchhHHHHHHHHH
Q 012479 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (462)
Q Consensus 160 --~G~~~~----d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~ 199 (462)
.++... +.+..+.+++++++|+||.++-+.....++.++.
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 122110 1111235678899999999996665555666654
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.11 Score=54.25 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=60.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEE-ecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec---
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp--- 187 (462)
.||+|||+ .+|..++..+++. ..+++++.. ++..++..+.|++.|+.. ..+.+|++++.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999999876 003455433 444456677888888763 6899999988888888875
Q ss_pred -chhHHHHHHHHHhcCCCCcEEE
Q 012479 188 -DAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 188 -d~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 45777766553 34565443
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.077 Score=56.66 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=50.1
Q ss_pred ccccCCCCEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
++.+++ ++|.|||+|..|.+ +|+-|++. |.+|.+.+.......+..++.|+... .....+.+.++|+||
T Consensus 2 ~~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv 71 (461)
T PRK00421 2 PELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVV 71 (461)
T ss_pred CCcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEE
Confidence 355677 89999999999999 79999999 99987766543333333455677641 122345567899888
Q ss_pred Ee
Q 012479 184 LL 185 (462)
Q Consensus 184 La 185 (462)
+.
T Consensus 72 ~s 73 (461)
T PRK00421 72 YS 73 (461)
T ss_pred EC
Confidence 75
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.06 Score=52.84 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=29.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi 144 (462)
..++| ++|+|.|+|++|...++.|.+. |.+|+
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv 58 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVV 58 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 56788 9999999999999999999988 88876
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.081 Score=54.55 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=41.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCCch------hHHHHHHc-----CceecCCCcCCH
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR------SFAEARAA-----GFTEENGTLGDI 172 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~~~------s~~~A~~~-----G~~~~d~~~~~~ 172 (462)
+||+|||. |.+|.++|..|... ++ ++++.+..... .++..... .... ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 69999999 99999999999876 54 45444442211 11211111 1111 2345
Q ss_pred hhhhccCCeEEEeec
Q 012479 173 YETISGSDLVLLLIS 187 (462)
Q Consensus 173 ~eav~~ADvViLavp 187 (462)
.+.+++||+||++--
T Consensus 73 ~~~~~daDivvitaG 87 (322)
T cd01338 73 NVAFKDADWALLVGA 87 (322)
T ss_pred HHHhCCCCEEEEeCC
Confidence 678999999999863
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.081 Score=53.67 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=51.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCc---hhHHHHHHcCceecC-CCcCC------Hhhh
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYET 175 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~---~s~~~A~~~G~~~~d-~~~~~------~~ea 175 (462)
.++| +++.|||.|-.+.|++..|... |. ++.|.+|..+ +..+.++..+..... -...+ ..+.
T Consensus 121 ~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (288)
T PRK12749 121 DIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA 193 (288)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhh
Confidence 4678 8999999999999999999887 76 7888888742 444444433210000 00112 2235
Q ss_pred hccCCeEEEeecchhH
Q 012479 176 ISGSDLVLLLISDAAQ 191 (462)
Q Consensus 176 v~~ADvViLavpd~a~ 191 (462)
+.++|+||.+||....
T Consensus 194 ~~~aDivINaTp~Gm~ 209 (288)
T PRK12749 194 LASADILTNGTKVGMK 209 (288)
T ss_pred cccCCEEEECCCCCCC
Confidence 6789999999997543
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.084 Score=53.67 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=58.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..+|.-|.+. +..|.+... . +.+..+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs---~----------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHI---F----------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCC---C----------------CcCHHHHHhhCCEEEE
Confidence 46899 999999998 8999999999888 777766532 1 1356678999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|++++
T Consensus 207 AvGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred ecCcccc---cC--HHHcCCCcEEEEee
Confidence 9975332 22 34578999988864
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.26 Score=53.13 Aligned_cols=71 Identities=17% Similarity=0.052 Sum_probs=42.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcC--Cc--EEEEEecCCchhHHHHHH--cC-------ceecCCCcCCHhhhhc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKS--DI--VVKVGLRKGSRSFAEARA--AG-------FTEENGTLGDIYETIS 177 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~--G~--~Vivg~r~~~~s~~~A~~--~G-------~~~~d~~~~~~~eav~ 177 (462)
-||+|||. |++|.++|-.|... +=+|. ++ +++..++..+.....+.+ ++ +.. ..+..+.++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i----~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSI----GIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEE----ecCCHHHhC
Confidence 58999999 99999999988753 00110 22 454444443333322222 11 111 134567899
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
+||+||+.--
T Consensus 176 daDiVVitAG 185 (444)
T PLN00112 176 DAEWALLIGA 185 (444)
T ss_pred cCCEEEECCC
Confidence 9999999764
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.12 Score=53.65 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=54.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhh---h-hhcCCcEEEEEecCC----------chh-HHHHHHcCceec-C--CCcCCHh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSL---A-EAKSDIVVKVGLRKG----------SRS-FAEARAAGFTEE-N--GTLGDIY 173 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~---~-~~g~G~~Vivg~r~~----------~~s-~~~A~~~G~~~~-d--~~~~~~~ 173 (462)
.+|+|||+|.+|..+++.|++.- . ..|.+++++...++. ... .+.+.+.|.... + ....+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 58999999999999999987641 0 012234543322211 111 122223332110 0 0123677
Q ss_pred hhh--ccCCeEEEeecchhHH-HH-HHHHHhcCCCCcEEEE
Q 012479 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (462)
Q Consensus 174 eav--~~ADvViLavpd~a~~-~v-l~eI~~~Lk~gaiL~~ 210 (462)
+++ .+.|+|+.++|+..+. +. ++-+...|+.|..|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 777 4689999999986652 22 2233455667775543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.2 Score=52.25 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=57.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc-cCCeEEEe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-GSDLVLLL 185 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~-~ADvViLa 185 (462)
-.| ++|+|+|+|-.|+.-.|-.+.. |.+|+...++ ++..+.|++.|.... +....+..+.++ .+|+||.+
T Consensus 165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~-~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRS-EEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCC-hHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 346 8999999998887777777666 8787766555 455788999886421 111112223333 39999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+++... +.-.+.|+++-.++.+
T Consensus 237 v~~~~~----~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 VGPATL----EPSLKALRRGGTLVLV 258 (339)
T ss_pred CChhhH----HHHHHHHhcCCEEEEE
Confidence 993322 3333445666555544
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.12 Score=52.59 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.+. .|..++.-|... |..|.+.... +.+..+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 46899 9999999998 999999999988 7777765421 2467788899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++--.. ++. ...+++|++|++++
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVG 236 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEec
Confidence 775322 222 23678999988875
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.12 Score=52.51 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=42.2
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc--Ccee-cCC--CcCCHhhhhccCCeEEEee
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENG--TLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~d~--~~~~~~eav~~ADvViLav 186 (462)
|+|||.|.+|.++|..|... |+ ++++.+...++....+.+. .... ... ...+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999987 75 5665555443322222211 0000 000 0112256899999999988
Q ss_pred c
Q 012479 187 S 187 (462)
Q Consensus 187 p 187 (462)
.
T Consensus 75 g 75 (300)
T cd00300 75 G 75 (300)
T ss_pred C
Confidence 6
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.26 Score=50.93 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=42.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCC--chhHHHHHH--cCc-eecCC--CcCCHhhhh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSFAEARA--AGF-TEENG--TLGDIYETI 176 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~--~~s~~~A~~--~G~-~~~d~--~~~~~~eav 176 (462)
.||+|||. |.+|.++|..|... ++ ++++.+... +.....+.+ +.. ..... ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999999877 54 455544432 112222221 111 00000 013456789
Q ss_pred ccCCeEEEeec
Q 012479 177 SGSDLVLLLIS 187 (462)
Q Consensus 177 ~~ADvViLavp 187 (462)
++||+||++--
T Consensus 78 ~daDvVVitAG 88 (323)
T TIGR01759 78 KDVDAALLVGA 88 (323)
T ss_pred CCCCEEEEeCC
Confidence 99999999763
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.11 Score=52.96 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=58.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. +-.|.+...+ +.++++.+++||+||.
T Consensus 151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs 204 (287)
T PRK14173 151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV 204 (287)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999966 7899999999887 7777665321 2367788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-.. ++. ..++|+|++|+|++
T Consensus 205 AvGkp~---~i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 205 AVGRPH---LIT--PEMVRPGAVVVDVG 227 (287)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 998543 232 34578999988864
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.17 Score=51.80 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=42.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCC--chhHHHHH-------HcCc--eecCCCcCCHhhhhc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGF--TEENGTLGDIYETIS 177 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~--~~s~~~A~-------~~G~--~~~d~~~~~~~eav~ 177 (462)
+||+|||. |..|..++..|... |+ +|+..++.. ++....+. ..+. .. . ...+ .+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i-~-~~~d-~~~l~ 71 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI-K-ISSD-LSDVA 71 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEE-E-ECCC-HHHhC
Confidence 68999998 99999999999987 76 465555532 11111110 1111 11 0 0124 45699
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
+||+||++..
T Consensus 72 ~aDiViitag 81 (309)
T cd05294 72 GSDIVIITAG 81 (309)
T ss_pred CCCEEEEecC
Confidence 9999999985
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.19 Score=51.99 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=60.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-cCceecCCCcC-CHh----hhh--ccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~-~~~----eav--~~ADvVi 183 (462)
.++.|+|.|.+|...++.++.. |...++..+.++...+.|++ .|......... +.. +.- ..+|++|
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 4899999999999988888877 76444555666677899988 45432100001 111 122 3589999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
-|+- ....+.+....++++-.+++.
T Consensus 244 e~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 244 EAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 9999 334566666777887766544
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.11 Score=53.09 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=58.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.+..+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA 207 (297)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999966 7899999999888 7777665321 2357788899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-.. ++. ..++|+|++|++++
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 208 AAGRPN---LIG--AEMVKPGAVVVDVG 230 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998543 232 34678999988875
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.12 Score=52.49 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=58.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| |++.|||-+ ..|..++.-|.+. |..|.+...+ +.+..+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV 207 (278)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999966 7899999999988 7777765421 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 208 AIGRPKF---ID--EEYVKEGAIVIDVG 230 (278)
T ss_pred cCCCcCc---cC--HHHcCCCcEEEEee
Confidence 9985432 22 24578999988873
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.11 Score=53.22 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=58.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.+.++.+++||+||.
T Consensus 163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA 216 (299)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999976 7899999999887 7777765321 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-. .++. ..++|+|++|++++
T Consensus 217 AvGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCc---CccC--HHHcCCCCEEEEee
Confidence 99753 3333 34579999988864
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.13 Score=52.37 Aligned_cols=76 Identities=13% Similarity=0.202 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|.|||-+ ..|..++.-|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999976 7899999999887 7777765321 2357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 206 AvG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 206 AVGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred ccCCcCc---cC--HHHcCCCcEEEEee
Confidence 9985433 22 24578999988875
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.17 Score=43.54 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH---HcCceecCCCcCCHhhhhccCCeEEEeecchhHHH-HHH
Q 012479 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE 196 (462)
Q Consensus 121 ~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~-vl~ 196 (462)
+-+..++..|++. |.+|.+.+..-.. ..... ..++.. +.+.+++++++|+||++++-....+ -++
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~~ 85 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDE-EEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDWE 85 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHH-HHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGHH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccCh-HHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCHH
Confidence 5567788888888 9988776554332 22222 246664 5688999999999999999888876 466
Q ss_pred HHHhcCCCCcEEEEeccc
Q 012479 197 KIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 197 eI~~~Lk~gaiL~~a~G~ 214 (462)
++...++++.+|.|.-++
T Consensus 86 ~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 86 EIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHSCSSEEEEESSST
T ss_pred HHHHhcCCCCEEEECccc
Confidence 788888888889988764
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.13 Score=52.26 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=58.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.+..+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999966 7899999999987 7777765321 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 209 AvGk~~~---i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPEF---IK--ADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9985432 22 34578999988874
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.11 Score=53.26 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=42.5
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchh----HHHHHHcCcee-cCCC-cCCHhhhhccCCeEEE
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS----FAEARAAGFTE-ENGT-LGDIYETISGSDLVLL 184 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s----~~~A~~~G~~~-~d~~-~~~~~eav~~ADvViL 184 (462)
||+|||.|.+|.++|..|... ++ ++++.+...... ++.....-+.. .+.. ..+..+.+++||+||+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEE
Confidence 799999999999999999887 66 455555433322 22222111110 0000 1123578899999999
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+.-
T Consensus 75 taG 77 (307)
T cd05290 75 TAG 77 (307)
T ss_pred CCC
Confidence 864
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.13 Score=52.37 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| |++.|||-+ ..|..++.-|.+. +..|.+.... +.+..+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999977 7899999999887 7777665321 2367788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 207 AvG~~~~---i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 207 ATGLAKF---VK--KDYIKPGAIVIDVG 229 (284)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9985432 22 34578999988864
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.1 Score=53.22 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=57.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.+..+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5899 999999976 7899999999887 7777665321 23677889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+.-.. ++. ..++|+|++|+|++
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDVG 231 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEee
Confidence 98432 332 34578999988864
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.14 Score=52.23 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=57.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..+|.-|... +..|.+.... +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV 207 (284)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 35899 999999965 8899999999887 7777765321 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-.. ++. ..++|+|++|+|++
T Consensus 208 AvG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 208 AVGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred ecCCCC---cCC--HHHcCCCCEEEEee
Confidence 997443 232 24568999998875
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.34 Score=49.20 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=49.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHc-----C----ceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAA-----G----FTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~-----G----~~~~d~~~~~~~eav~~ADv 181 (462)
++|+|||.|.+-.+-..-.+.. +.. .+.+.+.++...+.+++. | .........+...-+.+.|+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~------~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH------GPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H------TT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SE
T ss_pred ceEEEEcCCCcchHHHHHHHHh------CCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCE
Confidence 5999999999987755444333 322 345667766555555331 1 11100001122223568899
Q ss_pred EEEeecch----hHHHHHHHHHhcCCCCcEEE--Eeccch
Q 012479 182 VLLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (462)
Q Consensus 182 ViLavpd~----a~~~vl~eI~~~Lk~gaiL~--~a~G~~ 215 (462)
|+++.-.. .=.++++.|..+|++|+.|+ ..+|..
T Consensus 196 V~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 196 VFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp EEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred EEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 99998776 45679999999999999876 667764
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.12 Score=55.60 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=49.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC-CHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~-~~~eav~~ADvViL 184 (462)
..+.+ ++|.|+|+|-.|.++|+-|++. |.+|.+.++......+...+.|+... .. ...+-++++|+||.
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~~d~vV~ 80 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADI---STAEASDQLDSFSLVVT 80 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEE---eCCCchhHhcCCCEEEe
Confidence 55677 9999999999999999999999 98877766543332233455687541 11 23345678899887
Q ss_pred e
Q 012479 185 L 185 (462)
Q Consensus 185 a 185 (462)
.
T Consensus 81 S 81 (473)
T PRK00141 81 S 81 (473)
T ss_pred C
Confidence 5
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.16 Score=52.33 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=41.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHHh-hhhhcCCcEEEEEecCCchhHHHHHHcCcee------cCC-CcCCHhhhhccCCeE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------ENG-TLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds-~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~------~d~-~~~~~~eav~~ADvV 182 (462)
.||+|||. |.+|.+++..|... +.+...+.++++.++........+...-+.. .+- ...+..+++++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 47999999 99999999999875 0000002356665553221111111111110 000 024556889999999
Q ss_pred EEee
Q 012479 183 LLLI 186 (462)
Q Consensus 183 iLav 186 (462)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9875
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.47 Score=48.34 Aligned_cols=93 Identities=22% Similarity=0.144 Sum_probs=61.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC--CchhHHHHHHcCceecCCCcCCHhh--hhccCCeEEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVLL 184 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~--~~~s~~~A~~~G~~~~d~~~~~~~e--av~~ADvViL 184 (462)
.| .+|.|+|.|.+|...++.++.. |.+|++..+. +++.++.+++.|....+....+..+ .....|+||-
T Consensus 172 ~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 172 NP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 67 8999999999999999999988 8887666553 3556778888887531111111111 2245799999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
++.... .+.+....++++-.++..
T Consensus 245 ~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred CcCCHH---HHHHHHHHccCCcEEEEE
Confidence 987432 445555667777665544
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.15 Score=54.64 Aligned_cols=70 Identities=27% Similarity=0.183 Sum_probs=48.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc----hhHHHHHHcCceecCCCcCCHhhhhccCCeE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~----~s~~~A~~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
.+++ ++|.|||.|..|.+.|..|++. |.+|++.++.+. ...+..++.|+... ..+..+...++|+|
T Consensus 13 ~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~V 82 (480)
T PRK01438 13 DWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLV 82 (480)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEE
Confidence 3567 8999999999999999999998 998887765432 11234556687541 11211234578999
Q ss_pred EEee
Q 012479 183 LLLI 186 (462)
Q Consensus 183 iLav 186 (462)
|+++
T Consensus 83 v~s~ 86 (480)
T PRK01438 83 VTSP 86 (480)
T ss_pred EECC
Confidence 9876
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.36 Score=44.64 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCCCEEEEEc--ccchHHHHHHHHHHhhhhhcCCcEEEEEecCC----c--hhH----HHHHHcCc--eecCCCcCCHhh
Q 012479 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----S--RSF----AEARAAGF--TEENGTLGDIYE 174 (462)
Q Consensus 109 ~gikkIgIIG--~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~--~s~----~~A~~~G~--~~~d~~~~~~~e 174 (462)
|| +||++|| .+++..|++..+..- |.++.+....+ . ..+ +.+.+.|. .. +.+.+|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 389999999999988 98866654443 1 122 22333443 32 578999
Q ss_pred hhccCCeEEEeecc
Q 012479 175 TISGSDLVLLLISD 188 (462)
Q Consensus 175 av~~ADvViLavpd 188 (462)
++++||+|+...-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999999877655
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.12 Score=55.19 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=50.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch----hHHHHHHcCceecCCCcCCHhhhhccCCe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~----s~~~A~~~G~~~~d~~~~~~~eav~~ADv 181 (462)
..+.+ ++|+|+|+|..|.++|+-|++. |..|.+.++.... ..+..++.|+.... -....+.+.++|+
T Consensus 10 ~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~dl 80 (458)
T PRK01710 10 KFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVL--GENYLDKLDGFDV 80 (458)
T ss_pred hhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEe--CCCChHHhccCCE
Confidence 55677 9999999999999999999999 9988776654321 12335566875310 1122455688999
Q ss_pred EEEe
Q 012479 182 VLLL 185 (462)
Q Consensus 182 ViLa 185 (462)
||+.
T Consensus 81 VV~S 84 (458)
T PRK01710 81 IFKT 84 (458)
T ss_pred EEEC
Confidence 8886
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.13 Score=45.63 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
+||.|||+|..|..++.+|..+ |+ ++.+.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD 33 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVD 33 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecC
Confidence 7999999999999999999998 77 555554
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.17 Score=51.57 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=57.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| |+|.|||-+ ..|..++.-|... +..|.+.... +.+..+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 46899 999999966 7899999999887 7777665321 2356677899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEec
Confidence 9985433 22 24578999988874
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.16 Score=51.59 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=58.3
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| +++.|||-++ .|..+++-|... +..|.+.... +.+..+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 46899 9999999885 689999999987 7777765432 2356678899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++--... +. .+.+|+|++|+|++
T Consensus 206 AvG~p~~---i~--~d~vk~gavVIDVG 228 (283)
T COG0190 206 AVGKPHF---IK--ADMVKPGAVVIDVG 228 (283)
T ss_pred ecCCccc---cc--cccccCCCEEEecC
Confidence 9974322 22 56789999998885
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.15 Score=53.19 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=44.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| ++|.|||.|-||...+++|++. |. ++++.+|.... ...+-. ....-+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 34788 9999999999999999999998 86 68888887421 111100 0011133468999999
Q ss_pred ee
Q 012479 185 LI 186 (462)
Q Consensus 185 av 186 (462)
++
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.16 Score=51.75 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=57.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.+..+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999976 7899999999877 7677664221 2356788899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-. .++. ..++|+|++|+|++
T Consensus 207 AvGk~---~~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKA---ELVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCc---CccC--HHHcCCCCEEEEee
Confidence 99842 2333 34578999988864
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.18 Score=51.29 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=57.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 35899 999999976 7899999999877 7777665422 2357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 207 AvGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9985332 22 24578999988864
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.2 Score=53.00 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=48.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH----HHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~----~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
+++ |+|.|||.|.+|.++|..|.+. |.+|++.++.....+ +...+.|....- .....+...++|+||
T Consensus 3 ~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVV 73 (450)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEE
Confidence 577 9999999999999999999999 999888776542222 222334553210 112234557799999
Q ss_pred Eeec
Q 012479 184 LLIS 187 (462)
Q Consensus 184 Lavp 187 (462)
+++-
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 9765
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.13 Score=52.15 Aligned_cols=77 Identities=21% Similarity=0.104 Sum_probs=51.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCC--CcCC---HhhhhccCC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENG--TLGD---IYETISGSD 180 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~--~~~~---~~eav~~AD 180 (462)
.+++ +++.|||.|-.|.|++-.|.+. |. ++.|.+|..++..+.+.......... ...+ ..+.+.++|
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcC
Confidence 4667 8999999999999999999988 87 67788887666555554421000000 0112 233556789
Q ss_pred eEEEeecchh
Q 012479 181 LVLLLISDAA 190 (462)
Q Consensus 181 vViLavpd~a 190 (462)
+||.+||...
T Consensus 197 ivINaTp~Gm 206 (283)
T PRK14027 197 GVVNATPMGM 206 (283)
T ss_pred EEEEcCCCCC
Confidence 9999998543
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.16 Score=49.47 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
...|+. .+|.|||+|..|..+|++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 367788 9999999999999999999988
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.19 Score=51.35 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=57.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| |+|.|||-+ ..|..++.-|.+. +..|.+.... +.+..+.+++||+||.
T Consensus 156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA 209 (294)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999976 7899999999888 7777665321 2357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 210 AvGkp~~---i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPNF---VK--YSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9985432 22 24578999988863
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.2 Score=51.26 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=55.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|.|||-+ ..|..++.-|.+.+... +..|.+.... ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 46889 999999966 78999999887621000 5566554321 2356788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-. .++. ..++|+|++|++++
T Consensus 213 Avg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccC--HHHcCCCCEEEEee
Confidence 99643 3333 23459999988875
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.19 Score=52.79 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=57.3
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. +-.|.+...+ +.+..+.+++||+||.
T Consensus 227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs 280 (364)
T PLN02616 227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS 280 (364)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 35789 999999966 7899999999887 7777665321 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ...+|+|++|+|++
T Consensus 281 AvGkp~~---i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPNM---VR--GSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcCc---CC--HHHcCCCCEEEecc
Confidence 9985432 22 34578999988864
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.3 Score=46.77 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
.+.|+. .+|.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 477888 9999999999999999999998 87 344443
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.2 Score=53.45 Aligned_cols=66 Identities=29% Similarity=0.297 Sum_probs=46.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
.++| ++|.|||+|-.|.+.|+-|++. |.+|.+.++..... ...++.|+... ..+ .+.+.++|+||.
T Consensus 6 ~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~-~~l~~~g~~~~---~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 6 GFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPASR-AKAAAAGITTA---DLR-TADWSGFAALVL 71 (460)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhhH-HHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence 3678 9999999999999999999998 99887666443322 23445677531 112 234578998886
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.23 Score=50.60 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=56.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHH--hhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrd--s~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
..++| |++.|||-+ ..|..++.-|.+ . +..|.+.... +.++.+.+++||+|
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv 207 (284)
T PRK14193 154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII 207 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence 45889 999999965 789999999976 5 5566665321 24678889999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|.++.-.. ++. ..++|+|++|+|++
T Consensus 208 V~AvGkp~---~i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 208 VAAAGVAH---LVT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EEecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 99998543 232 34579999988864
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.55 Score=46.34 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=56.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceecCCCcCC---Hhhhh------cc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG 178 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav------~~ 178 (462)
.| .+|.|+|.|.+|...++-++.. |.+ |++. +.+++..+.+++.|... +.+ ..+.+ ..
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAA-DPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRG 187 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCC
Confidence 67 8999999999999999999888 886 5444 44556678888888742 111 11111 24
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
.|+|+-++... ..+++....++++-.++..
T Consensus 188 ~d~vid~~G~~---~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 188 VDVALEFSGAT---AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CCEEEECCCCh---HHHHHHHHHhcCCCEEEEe
Confidence 68888777532 2333334455665555443
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.33 Score=46.45 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
.+.|+. .+|.|||+|.+|..++++|..+ |+ ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 467778 9999999999999999999998 87 344443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.21 Score=51.61 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=40.0
Q ss_pred EEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCCchhHHHHHHcCceec-----CC--CcCCHhhhhc
Q 012479 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-----NG--TLGDIYETIS 177 (462)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~~~s~~~A~~~G~~~~-----d~--~~~~~~eav~ 177 (462)
+|+|||. |.+|.++|..|... ++ ++++.++........++..-+... .. ...+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999999875 43 355544432211111111100000 00 0124467899
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
+||+||++--
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999999764
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.22 Score=52.04 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=57.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|.|||-+ ..|..+|.-|.+. +..|.+.... +.+..+.+++||+||.
T Consensus 210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA 263 (345)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence 36889 999999966 6899999999877 7777655321 2356788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ...+|+|++|+|++
T Consensus 264 AvGkp~~---v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 264 AAGIPNL---VR--GSWLKPGAVVIDVG 286 (345)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9985432 22 34578999988874
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.19 Score=53.59 Aligned_cols=90 Identities=18% Similarity=0.267 Sum_probs=50.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhh----hhcCCcEEEE-EecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~----~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViL 184 (462)
.+|||||+|.+|..++..|.+..+ ..|.+++++. ..++..+ .......+... ..+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~-~~~~~~~~~~~----~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK-DRGVDLPGILL----TTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh-ccCCCCcccce----eCCHHHHhhCCCCCEEEE
Confidence 579999999999999988865411 1122344432 3333211 11011111111 457888885 4799999
Q ss_pred eecch-hHHHHHHHHHhcCCCCcEEE
Q 012479 185 LISDA-AQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 185 avpd~-a~~~vl~eI~~~Lk~gaiL~ 209 (462)
++++. .+.+. +...|+.|+.|+
T Consensus 79 ~tg~~~~~~~~---~~~aL~~GkhVV 101 (426)
T PRK06349 79 LMGGIEPAREL---ILKALEAGKHVV 101 (426)
T ss_pred CCCCchHHHHH---HHHHHHCCCeEE
Confidence 98763 22333 334456676544
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.49 Score=46.11 Aligned_cols=82 Identities=17% Similarity=0.035 Sum_probs=56.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
-.|+| ++|.|||.|..|.-=++.|.+. |-+|+|....- ++......+.++...+ ...+.++.. .+++||.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEEE
Confidence 46789 9999999999999999999988 87777765543 3333444444422111 123444444 4999999
Q ss_pred eecchhHHHHHH
Q 012479 185 LISDAAQADNYE 196 (462)
Q Consensus 185 avpd~a~~~vl~ 196 (462)
+|.|....+-+.
T Consensus 79 At~d~~ln~~i~ 90 (210)
T COG1648 79 ATDDEELNERIA 90 (210)
T ss_pred eCCCHHHHHHHH
Confidence 999987755333
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.24 Score=51.14 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=40.1
Q ss_pred EEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCC--chhH----HHHHH-----cCceecCCCcCCHh
Q 012479 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARA-----AGFTEENGTLGDIY 173 (462)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~--~~s~----~~A~~-----~G~~~~d~~~~~~~ 173 (462)
||+|||. |.+|.+++..|... ++ ++++.+... +... +.... .+... ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 7999999 99999999999876 43 355444432 1111 11110 01111 13566
Q ss_pred hhhccCCeEEEee
Q 012479 174 ETISGSDLVLLLI 186 (462)
Q Consensus 174 eav~~ADvViLav 186 (462)
+++++||+||++-
T Consensus 72 ~~~~~aDiVVitA 84 (323)
T cd00704 72 EAFKDVDVAILVG 84 (323)
T ss_pred HHhCCCCEEEEeC
Confidence 8899999999875
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.2 Score=53.69 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=43.7
Q ss_pred CCEEEEEcccchHHHHHH--HHHHhhhhhcCCcEEEEEecCCchhHHHHH--------HcCc--eecCCCcCCHhhhhcc
Q 012479 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGF--TEENGTLGDIYETISG 178 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~--~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~--------~~G~--~~~d~~~~~~~eav~~ 178 (462)
|+||+|||.|++|.+.+. .+.... +-.+.+|++.+. +.+..+.+. ..+. .. ..+.|..+++++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~--~l~~~evvLvDi-d~er~~~~~~l~~~~~~~~~~~~~i--~~ttD~~eal~d 75 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVP--ALRDAEIALMDI-DPERLEESEIVARKLAESLGASAKI--TATTDRREALQG 75 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCc--cCCCCEEEEECC-CHHHHHHHHHHHHHHHHhcCCCeEE--EEECCHHHHhCC
Confidence 479999999999977665 654220 011346655544 333333211 1221 11 114566899999
Q ss_pred CCeEEEeecch
Q 012479 179 SDLVLLLISDA 189 (462)
Q Consensus 179 ADvViLavpd~ 189 (462)
||+||.++-..
T Consensus 76 ADfVv~ti~vg 86 (431)
T PRK15076 76 ADYVINAIQVG 86 (431)
T ss_pred CCEEeEeeeeC
Confidence 99999998764
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.45 Score=47.78 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=57.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
+| +++.|+|.|.+|...++-++.. |.++++..+......+.|.+.++.. ...+.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 56 8899999999999999888887 8875555555555566666554331 111122457999999886
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEe
Q 012479 189 AAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
.. .++...+.++++-.++..
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEE
Confidence 43 334445566776665544
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.43 Score=49.26 Aligned_cols=158 Identities=12% Similarity=0.051 Sum_probs=93.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
.||+||| .|-.|.-+.+-|.+. ..+++. ..... +. +. ..+.+++++++|+||+|+|...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~-~l~s~-~~--------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELL-SIAPD-RR--------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEE-EEecc-cc--------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 5899999 688888888888765 123432 22211 11 22 2355667789999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCC
Q 012479 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~t 270 (462)
..++.+++. ..|..|+|.++- + .+.+ +++-+.|--... .|+..++ ... |+ .+++.
T Consensus 62 s~~~~~~~~---~~g~~VIDlSad---f------Rl~~--~~~yglPEln~~-~~~~i~~--------a~l-IA-nPgC~ 116 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTA---Y------RTAD--DWAYGFPELAPG-QREKIRN--------SKR-IA-NPGCY 116 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChH---H------hCCC--CCeEEccccCHH-HHHhhcc--------CCE-EE-CCCCH
Confidence 888777653 367788888764 2 1112 566666754322 2333332 233 44 55556
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHH
Q 012479 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (462)
Q Consensus 271 gea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d 322 (462)
.-+.-+++.=+...|.. +......+++.+..||.+-..++.+.+
T Consensus 117 aTa~~LaL~PL~~~~li--------~~~~~~~~~a~SG~SGAGr~~~~~l~~ 160 (310)
T TIGR01851 117 PTGFIALMRPLVEAGIL--------PADFPITINAVSGYSGGGKAMIADYEQ 160 (310)
T ss_pred HHHHHHHHHHHHHcCCc--------cccceEEEEeccccCccChhhhHHhhh
Confidence 66666666555555532 111112455666778888877766553
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.33 Score=49.69 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=52.2
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHHHHHcCceecCCCcCCHhhhhccC
Q 012479 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (462)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~d~~~~~~~eav~~A 179 (462)
.++| .||++||-| ++.+|++..+..- |.++.+...+. ....+.+++.|.... ...|+++++++|
T Consensus 147 ~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~a 217 (301)
T TIGR00670 147 RLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDEA 217 (301)
T ss_pred CCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCCC
Confidence 4788 999999985 9999999999887 88887765432 233456666665321 146899999999
Q ss_pred CeEEEe
Q 012479 180 DLVLLL 185 (462)
Q Consensus 180 DvViLa 185 (462)
|+|...
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 999873
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.47 Score=49.29 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=55.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC---------------------chhHHHHHH---
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFAEARA--- 159 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~---------------------~~s~~~A~~--- 159 (462)
...|+. .+|.|||+|-+|..+|.+|..+ |+ ++.+.++.. .+....++.
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 467788 9999999999999999999988 77 555555421 111111111
Q ss_pred c--Ccee--c--CCCcCCHhhhhccCCeEEEeecchhHHHHHHHHH
Q 012479 160 A--GFTE--E--NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (462)
Q Consensus 160 ~--G~~~--~--d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~ 199 (462)
. .+.. . +-+..+..+.++++|+||.++-......++.+..
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 1110 0 0011234567889999999988776666666543
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.65 Score=45.74 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=58.6
Q ss_pred ccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCCHhhhhc
Q 012479 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~eav~ 177 (462)
-.|+.. -.++| ++|.|||.|.+|..=+..|.+. |-+|.|.-..- +...+.+....+... ....+.. -++
T Consensus 15 ~~~pi~-l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~-~r~~~~~-dl~ 84 (223)
T PRK05562 15 KYMFIS-LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLI-KGNYDKE-FIK 84 (223)
T ss_pred CEeeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEE-eCCCChH-HhC
Confidence 345544 56678 8999999999999989999888 87776654432 332333332223221 1112333 367
Q ss_pred cCCeEEEeecchhHHHHHHHHH
Q 012479 178 GSDLVLLLISDAAQADNYEKIF 199 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~eI~ 199 (462)
++++||.||.|...-+-+.+.+
T Consensus 85 g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 85 DKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred CCcEEEECCCCHHHHHHHHHHH
Confidence 8999999999987765554443
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.25 Score=53.44 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=50.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|.|+|+|..|.+.++-|+.. |.+|++.++. ....+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 34567 9999999999999999999988 9888876644 3334456667875311 11234567789988876
Q ss_pred e
Q 012479 186 I 186 (462)
Q Consensus 186 v 186 (462)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 5
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.32 Score=46.99 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=60.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---HhhhhccCCeEEEeec
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvViLavp 187 (462)
|||+||| .|..|.-+++-..++ |++|....|+.++.... .+.......+.+ ..+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhcccc---ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 6999999 699999999999999 99988878875543221 333221222333 3467888999999875
Q ss_pred ch------hHHHHHHHHHhcCCC-CcE-EEEeccch
Q 012479 188 DA------AQADNYEKIFSCMKP-NSI-LGLSHGFL 215 (462)
Q Consensus 188 d~------a~~~vl~eI~~~Lk~-gai-L~~a~G~~ 215 (462)
.. .+....+.+...++. +.. +.+++|..
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33 222333334455544 432 66777763
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.21 Score=54.86 Aligned_cols=76 Identities=25% Similarity=0.192 Sum_probs=50.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh-hccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea-v~~ADvViLa 185 (462)
.+++ +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+.... ...+..+. ...+|+|+.+
T Consensus 376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~~--~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQAL--TLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCcee--eHhHhhhhccccCeEEEec
Confidence 3677 8999999999999999999998 88888887765555555544432110 01122222 2356888888
Q ss_pred ecchhH
Q 012479 186 ISDAAQ 191 (462)
Q Consensus 186 vpd~a~ 191 (462)
+|....
T Consensus 447 T~vGm~ 452 (529)
T PLN02520 447 TSVGMQ 452 (529)
T ss_pred ccCCCC
Confidence 876543
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.17 Score=52.36 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=45.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (462)
+--+| .+++|+|+|..|.|.+++.|.. |-.-|||.|.+++-.++|++.|+++
T Consensus 189 kv~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 189 KVEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred ccCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 34467 8999999999999999999998 8766789998888899999999985
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.26 Score=52.00 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=53.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCc--hhHHHHHHcCceecC-CCcCCHh-hhhccCCeEEEee
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEEN-GTLGDIY-ETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~d-~~~~~~~-eav~~ADvViLav 186 (462)
+||+|||. |..|..+.+-|.+. .++++....+..+ +...... ..+...+ ....+.+ +.++++|+||+++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVF-PHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhC-ccccCccccceecCCHHHhcCCCEEEEcC
Confidence 79999995 89999999887765 1345544433211 1111110 0000000 0011222 2258899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
|.....++.+.+ +.|..|+|.++.
T Consensus 113 p~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 113 PHGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred CHHHHHHHHHHH----hCCCEEEEcCch
Confidence 998666666553 457777777764
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.5 Score=48.62 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=41.5
Q ss_pred EEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCC--chhHHHHHHcC-ceecCCCcC-CHhhhhccCCeEEEe
Q 012479 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAG-FTEENGTLG-DIYETISGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~--~~s~~~A~~~G-~~~~d~~~~-~~~eav~~ADvViLa 185 (462)
||+|||. |++|.++|..|... ++ ++++.+... ...++...... ......+.. +..+++++||+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEe
Confidence 7999999 99999999999877 65 455444332 11222221110 011000001 236789999999998
Q ss_pred ecc
Q 012479 186 ISD 188 (462)
Q Consensus 186 vpd 188 (462)
.-.
T Consensus 75 aG~ 77 (312)
T TIGR01772 75 AGV 77 (312)
T ss_pred CCC
Confidence 753
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.93 Score=46.01 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=59.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc---cCCeEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~---~ADvVi 183 (462)
+| .+|.|+|.|.+|...++-++.. |.. |++..+. ++..+.+++.|.... +....+..+..+ ..|+||
T Consensus 169 ~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 169 QG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVS-PRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCC-HHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 57 8999999999999999988888 874 5544444 556788888887420 111112233222 379999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
-++... ..++.....++++-.++..+
T Consensus 241 d~~G~~---~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVSGHP---SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 888753 23344445567776655443
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.59 Score=50.78 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=66.0
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-----ceec------
Q 012479 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTEE------ 165 (462)
Q Consensus 107 ~l~gikkIgIIG~----------G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-----~~~~------ 165 (462)
.++| +||+|+|+ .+-...++..|.+. |.+|.+.+..-.. .+..+..+ +...
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVTE-EQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-HHHHHHhhccccccccccccccc
Confidence 4788 99999998 56777888888888 8888776543211 11111121 1000
Q ss_pred -------CCCcCCHhhhhccCCeEEEeecchhHHHH-HHHHHhcCCCCcEEEEeccc
Q 012479 166 -------NGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 166 -------d~~~~~~~eav~~ADvViLavpd~a~~~v-l~eI~~~Lk~gaiL~~a~G~ 214 (462)
-..+.+..+++++||+|++++.-....++ ++++.+.|++..+|.|.-++
T Consensus 393 ~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~ 449 (473)
T PLN02353 393 SPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNV 449 (473)
T ss_pred ccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCC
Confidence 00134567899999999999998777653 55677777765578887665
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.43 Score=46.22 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEec
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r 148 (462)
...|+. .+|.|||+|.+|..++++|... |+ ++++.++
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~ 60 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVDF 60 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 477888 9999999999999999999988 76 3444443
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.4 Score=47.44 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
...|+. ++|.|||+|..|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 478888 9999999999999999999988
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.21 Score=52.37 Aligned_cols=84 Identities=15% Similarity=0.041 Sum_probs=52.6
Q ss_pred CEEEEEcccchHHHH-HHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCce---e-cCC-C---------c--CCHh-
Q 012479 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---E-ENG-T---------L--GDIY- 173 (462)
Q Consensus 112 kkIgIIG~G~mG~Ai-A~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~---~-~d~-~---------~--~~~~- 173 (462)
|||.++|.|++|+++ +.-|.++ |++|+..+. ++...+.-.+.|.- . .++ . . .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~-~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDV-NQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEEC-CHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999977 5555556 777665553 34445555555641 1 111 0 1 0112
Q ss_pred --hhhccCCeEEEeecchhHHHHHHHHHhcC
Q 012479 174 --ETISGSDLVLLLISDAAQADNYEKIFSCM 202 (462)
Q Consensus 174 --eav~~ADvViLavpd~a~~~vl~eI~~~L 202 (462)
+.+.++|+|++++++.....+...|.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 24458899999999887766666665555
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.32 Score=50.51 Aligned_cols=87 Identities=23% Similarity=0.189 Sum_probs=52.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcE--EEEEecCCc---hhHHHHHHcC--ceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIV--VKVGLRKGS---RSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~--Vivg~r~~~---~s~~~A~~~G--~~~~d~~~~~~~eav~~ADvVi 183 (462)
.+|+|||. |..|..+.+-|.++ ++. .+....... +... -.| +... -.+..+ ++++|+||
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~---~~~~~l~~~---~~~~~~-~~~vD~vF 71 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVP---FAGKNLRVR---EVDSFD-FSQVQLAF 71 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeec---cCCcceEEe---eCChHH-hcCCCEEE
Confidence 68999995 99999999999876 441 122332211 1111 111 1110 112223 57899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+++|.....++.+++. +.|..++|.+|-
T Consensus 72 la~p~~~s~~~v~~~~---~~G~~VIDlS~~ 99 (336)
T PRK05671 72 FAAGAAVSRSFAEKAR---AAGCSVIDLSGA 99 (336)
T ss_pred EcCCHHHHHHHHHHHH---HCCCeEEECchh
Confidence 9999876666666553 357778877763
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.69 Score=47.45 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=41.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh----HHHHHHc-CceecCCCcCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s----~~~A~~~-G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
|||+|||. |.+|.+++..|...+ +.+..+.+.+++ +.. ++..... -.........++.+.++++|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 68999999 999999999885421 013345544443 222 1221100 0111000013556788999999998
Q ss_pred ec
Q 012479 186 IS 187 (462)
Q Consensus 186 vp 187 (462)
.-
T Consensus 77 aG 78 (312)
T PRK05086 77 AG 78 (312)
T ss_pred CC
Confidence 75
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.43 Score=49.78 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhccC--CeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~A--DvViLavpd 188 (462)
-++||+|+|.|+.=.+++|.-. ++ .++.|+ |..+..++..+.|++.++.. -....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999998764 11 144443 33444556678888888831 22367899999877 999999999
Q ss_pred hhHHHHHHHHHhc
Q 012479 189 AAQADNYEKIFSC 201 (462)
Q Consensus 189 ~a~~~vl~eI~~~ 201 (462)
.++.++.-.++.+
T Consensus 83 ~qH~evv~l~l~~ 95 (351)
T KOG2741|consen 83 PQHYEVVMLALNK 95 (351)
T ss_pred ccHHHHHHHHHHc
Confidence 9999887655443
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.34 Score=50.49 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=55.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc---EEE-EE-ecCCchhHHHHHHcCceecCCCcCC-HhhhhccCCeEEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VG-LRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~---~Vi-vg-~r~~~~s~~~A~~~G~~~~d~~~~~-~~eav~~ADvViL 184 (462)
.||+||| .|..|..+.+-|.++ ++ ++. +. .+...+.... .|... .+.+ ..+.++++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 7899999 688899998888776 54 222 22 2222222221 12110 0111 1245688999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++|.....++.+++. +.|..|+|.++-
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 999998777777653 368888888774
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.56 Score=48.44 Aligned_cols=155 Identities=14% Similarity=0.071 Sum_probs=89.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
.||+||| .|..|..+.+-|.+. . +++.....+ +.. . ..+.++..+++|+||+|+|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~~~~s~-~~~------~--------~~~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELLSIPEA-KRK------D--------AAARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEEEEecC-CCC------c--------ccCchhhhcCCCEEEECCCHH
Confidence 6899999 799999999888765 3 343322221 111 1 112334567899999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCC
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~ 269 (462)
...++.+++. +.|..|+|.++- + .+.+ +++.+.|--... .|+..++ ... |+ .+++
T Consensus 62 ~s~~~~~~~~---~~g~~VIDlSad---f------Rl~~--~~~yglPEvn~~-~~~~i~~--------~~~-Ia-nPgC 116 (313)
T PRK11863 62 AAREAVALID---NPATRVIDASTA---H------RTAP--GWVYGFPELAPG-QRERIAA--------AKR-VA-NPGC 116 (313)
T ss_pred HHHHHHHHHH---hCCCEEEECChh---h------hcCC--CCeEEcCccCHH-HHHHhhc--------CCe-EE-cCCc
Confidence 8888877764 357788887763 2 1112 566666644221 3444442 233 33 5555
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHH
Q 012479 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESL 320 (462)
Q Consensus 270 tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~ 320 (462)
..-+.-++++=+..-|.. ++.....+++.+..||.+...++.+
T Consensus 117 ~~Ta~~laL~PL~~~~li--------~~~~~i~i~a~SG~SGAG~~~~~~~ 159 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLL--------PADYPVSINAVSGYSGGGKAMIAAY 159 (313)
T ss_pred HHHHHHHHHHHHHHcCCc--------ccCceEEEEEccccccCCccchHHH
Confidence 555666555545444532 1111124555566778877655554
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.33 Score=49.64 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=55.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCC----cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCC
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
..++| |++.|||-+ ..|..++.-|.+. | ..|.+...+ +.++.+.+++||
T Consensus 153 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~AD 206 (293)
T PRK14185 153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEAD 206 (293)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCC
Confidence 46899 999999976 7899999999865 4 345554221 236778889999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||.++.-... +. ...+|+|++|+|++
T Consensus 207 IvIsAvGkp~~---i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 207 IIIAALGQPEF---VK--ADMVKEGAVVIDVG 233 (293)
T ss_pred EEEEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 99999985432 22 34578999988874
|
|
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.53 Score=48.30 Aligned_cols=91 Identities=9% Similarity=0.161 Sum_probs=68.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeecc
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavpd 188 (462)
.||.|.| .|--|..+-..+... |-+++.|...+.- ..+-.|+.. ..++.|+.+. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 7899999 789999999999988 8899888765420 012257764 5678887765 7999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
....+.+++.... .-..+|++++||.-
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e 106 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQ 106 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCc
Confidence 9999999886542 22347889999963
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.24 Score=50.52 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=55.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHH----hhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCC
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrd----s~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
..++| |++.|||-+ ..|..++.-|.+ . +..|.+.... ..++.+.+++||
T Consensus 153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD 206 (286)
T PRK14184 153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD 206 (286)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence 46899 999999976 789999999987 4 5566654421 235778899999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||.++.-.. ++. ..++++|++|+|++
T Consensus 207 IVI~AvG~p~---li~--~~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPR---FVT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence 9999996432 232 23468999988875
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.56 Score=50.44 Aligned_cols=35 Identities=34% Similarity=0.366 Sum_probs=30.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
-+| ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 139 ~~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~ 173 (467)
T TIGR01318 139 PTG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRH 173 (467)
T ss_pred CCC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecC
Confidence 367 9999999999999999999998 9888777554
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.65 Score=49.29 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHHh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds 133 (462)
-||+|||. |++|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999999876
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.8 Score=42.95 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.7
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEec
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r 148 (462)
||.|||+|.+|..++++|... |+ ++.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999988 77 4555443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.46 Score=48.85 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=56.6
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHH----HcC--ceecCCCcCCHhhhh
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEAR----AAG--FTEENGTLGDIYETI 176 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~----~~G--~~~~d~~~~~~~eav 176 (462)
|+| +||+.||=| ||+.|+...-..- |+++.+...+ ++.-++.|+ +.| +.. +.|+.|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 899 999999976 7888887777666 9988876543 344444444 345 443 56899999
Q ss_pred ccCCeEEEeecchhH--HHHHHHHHhcCC
Q 012479 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMK 203 (462)
Q Consensus 177 ~~ADvViLavpd~a~--~~vl~eI~~~Lk 203 (462)
++||+|.-=+....= .+..++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 999999866554322 223444444444
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.41 Score=50.59 Aligned_cols=70 Identities=20% Similarity=0.128 Sum_probs=46.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc---hhHHHHHHcCceecCCCcCCHhhhhcc-CCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~---~s~~~A~~~G~~~~d~~~~~~~eav~~-ADvVi 183 (462)
++| ++|.|+|.|.+|.+.|+.|++. |.+|++.++... ...+...+.|+.... -....+...+ .|+||
T Consensus 3 ~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVIC--GSHPLELLDEDFDLMV 73 (447)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEe--CCCCHHHhcCcCCEEE
Confidence 567 9999999999999999999999 998877765422 222334455765310 0123344444 89888
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
...
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 754
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.3 Score=50.56 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=43.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCCc--hhHHHHHHcCc-eecC-CCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGF-TEEN-GTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~--~s~~~A~~~G~-~~~d-~~~~~~~eav~~ADvViL 184 (462)
.||+|||. |++|.++|..|... ++ ++++.+.... ..++....... ...+ ....+..+++++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 69999999 99999999999876 55 4555444321 11121111111 1101 012345789999999999
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 864
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.68 Score=48.53 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=30.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEec
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r 148 (462)
...|++ ++|.|||+|-.|..++.+|... |+ ++.+.++
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~ 167 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDH 167 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 357888 9999999999999999999988 77 4555444
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.34 Score=48.84 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=49.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+++.|||.|-.+.|++-.|.+. |. +|.|.+|..++..+.++..+... ..+. ....+|+||.+||...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~~----~~~~--~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYEW----RPDL--GGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCcc----hhhc--ccccCCEEEECCcccc
Confidence 6899999999999999999988 87 68888888766666666554321 0011 1246899999999654
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.44 Score=49.28 Aligned_cols=94 Identities=10% Similarity=0.031 Sum_probs=54.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCC-cEEEEEecCCch-hHHHHHHcCc------e--ecCCCcCC-HhhhhccC
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSR-SFAEARAAGF------T--EENGTLGD-IYETISGS 179 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~-s~~~A~~~G~------~--~~d~~~~~-~~eav~~A 179 (462)
+||+|||+ |.+|.-+++.|.+. . ++++...+.... .........+ . ..+-.+.+ ..+...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 48999995 99999999988765 3 455444333211 0111111111 0 00000111 22355789
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
|+|++++|.....++.+.+.. .|..+++.+|-
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999988887765533 57777777664
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.9 Score=40.53 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.4
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
+|.|||+|.+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999998 77 454443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.66 Score=45.49 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
...|++ .+|.|||+|-.|..++.+|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 477888 9999999999999999999988
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.33 Score=49.94 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=42.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecC--CchhHHHHHHcCc-eecCC-CcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK--GSRSFAEARAAGF-TEENG-TLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~--~~~s~~~A~~~G~-~~~d~-~~~~~~eav~~ADvViL 184 (462)
+||+|||. |++|.++|..|... ++ ++++.+.+ ....++....... ..... ...++.+.+++||+||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999877 65 44444332 1122232222111 11000 01223678999999998
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 864
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.4 Score=51.78 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=47.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHc--CceecCCCcC-CHhhhhccCCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~--G~~~~d~~~~-~~~eav~~ADvVi 183 (462)
+++ ++|.|||+|..|.++|+-|++. |.+|.+.+.... +..+..++. |+... .. ...+.+.++|+||
T Consensus 5 ~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLVA 74 (498)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEEE
Confidence 467 8999999999999999999999 998876654322 222333334 43321 12 2345677899999
Q ss_pred Ee--ecc
Q 012479 184 LL--ISD 188 (462)
Q Consensus 184 La--vpd 188 (462)
.. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 85 555
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.43 Score=52.41 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=51.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC--------------------chhHHHHHHcCceec-
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~- 165 (462)
.-.| ++|+|||.|..|.+.|..|++. |.+|++..+.. ....+.+++.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4568 9999999999999999999998 98887765321 123456777886421
Q ss_pred CCCc-C--CHhhhhccCCeEEEeecc
Q 012479 166 NGTL-G--DIYETISGSDLVLLLISD 188 (462)
Q Consensus 166 d~~~-~--~~~eav~~ADvViLavpd 188 (462)
+... . +.++.-...|+||+++-.
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCC
Confidence 1111 1 133334568999999864
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.4 Score=46.53 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=91.9
Q ss_pred CEEEEEcc-cchHHHHHHHHH-HhhhhhcCCcE---EEEEecCCchhHHHHHHcCceecCCCcCCH-h-hhhccCCeEEE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr-ds~~~~g~G~~---Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~-eav~~ADvViL 184 (462)
++|||||+ |..|..+.+.|. ++ .+. ++..... ++... ...|......+.+. + +..++.|++|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~--~s~g~--~~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTS--QLGQA--APSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEch--hhCCC--cCCCCCCcceEEcCcccccccCCCEEEE
Confidence 58999996 999999999888 54 442 2222111 11111 11111000012222 2 35788999999
Q ss_pred eecchhHHHHHHHHHhcCCCC--cEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEE
Q 012479 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g--aiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~al 262 (462)
+.+.....++..... +.| .+|++.++. + ...+|++.| -|---......... .|+..
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa---~------Rmd~dVPLV--VPeVN~~~i~~~~~-------~gi~~- 128 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASS---L------RMKDDAVII--LDPVNQDVITDGLN-------NGIRT- 128 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChh---h------hcCCCCCEE--eCCcCHHHHHhHHh-------CCcCe-
Confidence 999886666666544 467 678888764 2 112344443 35333233322112 35533
Q ss_pred EeeccCCCHHHHHHHH-HHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHH
Q 012479 263 FAVHQDVDGRATNVAL-GWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (462)
Q Consensus 263 iav~qd~tgea~e~a~-al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v 325 (462)
|+ .++++--.+-.++ .|.+..|-.+++-||+.. +||.+...|+.+.+...
T Consensus 129 ia-nPNCst~~l~~aL~pL~~~~~i~~v~VsTyQA------------vSGAG~~g~~eL~~Qt~ 179 (366)
T TIGR01745 129 FV-GGNCTVSLMLMSLGGLFANDLVEWVSVATYQA------------ASGGGARHMRELLTQMG 179 (366)
T ss_pred EE-CcCHHHHHHHHHHHHHHhccCccEEEEEechh------------hhhcCHHHHHHHHHHHH
Confidence 23 4555655554444 444456655677665432 67888877777766654
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.62 Score=52.15 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
-+| ++|+|||.|..|.+.|..|++. |++|++..+.
T Consensus 308 ~~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~ 342 (639)
T PRK12809 308 PRS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRH 342 (639)
T ss_pred CCC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCC
Confidence 358 9999999999999999999998 9988887654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.97 Score=45.89 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=60.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH-hhhhccCCeEEEeec
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~eav~~ADvViLavp 187 (462)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. ++..+.+++.|... +.+. .+.-+..|+++.++.
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~----vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAAS----AGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCce----eccccccCcccceEEEECCC
Confidence 46 8999999999999888888877 8876655554 44588999999753 2221 111234688887765
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEec
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
.. +.+....+.++++-.++..+
T Consensus 233 ~~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 233 AG---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred cH---HHHHHHHHhhCCCcEEEEEe
Confidence 43 35666667788877665443
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.58 Score=47.58 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
| ++|+|||--.==..+++.|.+. |++|.+..-.++. . ...|... ..+.++++++||+|++.+|+.
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~-~---~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD-H---GFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc-c---ccCCcee----eccHHHHhccCCEEEECCccc
Confidence 5 8999999888888899999998 9988774322211 1 2347664 456788999999999998863
Q ss_pred hH-----HH------HH-HHHHhcCCCCcEEE
Q 012479 190 AQ-----AD------NY-EKIFSCMKPNSILG 209 (462)
Q Consensus 190 a~-----~~------vl-~eI~~~Lk~gaiL~ 209 (462)
.- .. .+ ++....|++|+++.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 11 00 11 34667788886544
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.5 Score=48.77 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=54.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc---EEEEEecCC--chhHHHHHHcCceecCCCcCCHh-hhhccCCeEEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG--SRSFAEARAAGFTEENGTLGDIY-ETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~~--~~s~~~A~~~G~~~~d~~~~~~~-eav~~ADvViL 184 (462)
+||+||| .|..|..+.+-|.+. ++ ++....+.. .+... -.|... ...+.. +.++++|+||+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~---~~g~~i---~v~d~~~~~~~~vDvVf~ 69 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS---FKGKEL---KVEDLTTFDFSGVDIALF 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee---eCCcee---EEeeCCHHHHcCCCEEEE
Confidence 7999999 689999999999876 55 333333321 12111 112111 022222 34578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
|+|.....++.+.+. +.|..|++.++-
T Consensus 70 A~g~g~s~~~~~~~~---~~G~~VIDlS~~ 96 (334)
T PRK14874 70 SAGGSVSKKYAPKAA---AAGAVVIDNSSA 96 (334)
T ss_pred CCChHHHHHHHHHHH---hCCCEEEECCch
Confidence 999888888777653 457777776653
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.39 Score=51.91 Aligned_cols=70 Identities=27% Similarity=0.300 Sum_probs=48.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh---HHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s---~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
.+.| |||.|+|+|.-|.+.++.|++. |..|++.+.+.... .......++....+.. +. +-..++|+|+
T Consensus 4 ~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~-~~-~~~~~~d~vV 74 (448)
T COG0771 4 DFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSH-DD-EDLAEFDLVV 74 (448)
T ss_pred cccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCcc-ch-hccccCCEEE
Confidence 4457 9999999999999999999999 99998887543321 1222345654321111 12 5677899998
Q ss_pred Ee
Q 012479 184 LL 185 (462)
Q Consensus 184 La 185 (462)
+.
T Consensus 75 ~S 76 (448)
T COG0771 75 KS 76 (448)
T ss_pred EC
Confidence 74
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.63 Score=47.88 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=50.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCch--hH----HHHHHcC-ceecCCCcCCHhhhhcc
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SF----AEARAAG-FTEENGTLGDIYETISG 178 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~--s~----~~A~~~G-~~~~d~~~~~~~eav~~ 178 (462)
.++| +||++||- +++..|++..+..- |.++.+...+.-. .. +.+++.| +.. ..++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 4788 99999997 68999999999877 8888776554311 11 3344444 332 4689999999
Q ss_pred CCeEEEee
Q 012479 179 SDLVLLLI 186 (462)
Q Consensus 179 ADvViLav 186 (462)
||+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999854
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.96 Score=47.23 Aligned_cols=87 Identities=11% Similarity=0.125 Sum_probs=53.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC-------------------chhHHHHHH-----
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~-------------------~~s~~~A~~----- 159 (462)
...|++ .+|.|||+|-.|..++++|... |+ ++.+.++.. .+....++.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 477888 9999999999999999999988 76 444433221 111111111
Q ss_pred cCceec--CCCc--CCHhhhhccCCeEEEeecchhHHHHHHHH
Q 012479 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKI 198 (462)
Q Consensus 160 ~G~~~~--d~~~--~~~~eav~~ADvViLavpd~a~~~vl~eI 198 (462)
..+... .... .+..+.++++|+||.++-+.....++.+.
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~ 138 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWA 138 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 111110 0111 12346789999999998766555566654
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=91.84 E-value=3.1 Score=44.48 Aligned_cols=174 Identities=20% Similarity=0.133 Sum_probs=100.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHH--HHHHc--Cceec----------------CCCc
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFA--EARAA--GFTEE----------------NGTL 169 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~--~A~~~--G~~~~----------------d~~~ 169 (462)
|.+|-|+|.|..+--+|..++.. +- +|=+..|.+.++.. .+.+. +.... |...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 57899999999999999999975 32 34444554433332 22222 21110 1123
Q ss_pred CCHhhhhccCCeEEEeecchhHHHHHHHHHhc-CCC-CcEEEEeccchHHHhhhcc-ccCCCCccEEe----------cc
Q 012479 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSC-MKP-NSILGLSHGFLLGHLQSMG-LDFPKNIGVIA----------VC 236 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~a~~~vl~eI~~~-Lk~-gaiL~~a~G~~i~~~~~~~-i~~p~~v~VV~----------v~ 236 (462)
.+.+++..+=|.+|||||-++..+|+++|.+. |+. ..+|.++..|.-+.+.+.. .....++.||. +.
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 45667777789999999999999999976432 333 3356666655322111100 02233677776 33
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCc-ccccchhhhccc
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRS 300 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~-viettf~~E~~~ 300 (462)
...|-++.-...++ ..++. ..+.....++....+++.+|-.. +..+-++.|.+.
T Consensus 155 ~~~~~~vlt~~vK~---------kiYig-St~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rN 209 (429)
T PF10100_consen 155 GEQPNRVLTTAVKK---------KIYIG-STHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRN 209 (429)
T ss_pred CCCcceehhhhhhc---------eEEEE-eCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcc
Confidence 33443443333331 22233 33455578888889999999753 455555556543
|
|
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.51 Score=49.02 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| .||++||-+ +...|++..+... |.++.+...+. +...+ .+++.|.... ...++++++
T Consensus 152 ~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (332)
T PRK04284 152 PYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEGV 222 (332)
T ss_pred CcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999975 8888999888877 88877765431 22232 2344563210 157899999
Q ss_pred ccCCeEEEe
Q 012479 177 SGSDLVLLL 185 (462)
Q Consensus 177 ~~ADvViLa 185 (462)
++||+|...
T Consensus 223 ~~aDvvy~~ 231 (332)
T PRK04284 223 KGSDVIYTD 231 (332)
T ss_pred CCCCEEEEC
Confidence 999999985
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.14 Score=47.03 Aligned_cols=85 Identities=16% Similarity=0.253 Sum_probs=48.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+..+| ++|++||+ +.+ ++..|+.. +.++.+.+++... ... ...++. ....++++++||+|++.
T Consensus 7 ~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~~-~~~~~~-----~~~~~~~l~~aD~viiT 69 (147)
T PF04016_consen 7 EIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IGE-EPGDVP-----DEDAEEILPWADVVIIT 69 (147)
T ss_dssp CTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG---S-SCT-EE-----GGGHHHHGGG-SEEEEE
T ss_pred hhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CCC-CCCcCC-----HHHHHHHHccCCEEEEE
Confidence 66778 99999997 323 67777766 7788888776432 111 112232 35678899999998875
Q ss_pred ecchhHHHHHHHHHhcCCCCcEE
Q 012479 186 ISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
-. ...-..+++|..+.++++.+
T Consensus 70 Gs-TlvN~Ti~~iL~~~~~~~~v 91 (147)
T PF04016_consen 70 GS-TLVNGTIDDILELARNAREV 91 (147)
T ss_dssp CH-HCCTTTHHHHHHHTTTSSEE
T ss_pred ee-eeecCCHHHHHHhCccCCeE
Confidence 33 22223444444444444433
|
; PDB: 3L5O_B 3NPG_A. |
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.67 Score=48.27 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=49.4
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| .||++||-+ ++..|++..+..- |.++.+..... ....+ .+++.|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4678 999999976 7899999988877 88877654332 12222 2344453210 147899999
Q ss_pred ccCCeEEEee
Q 012479 177 SGSDLVLLLI 186 (462)
Q Consensus 177 ~~ADvViLav 186 (462)
++||+|....
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.82 Score=46.66 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=40.1
Q ss_pred EEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH----cCceecC-CCcCCHhhhhccCCeEEEeec
Q 012479 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEEN-GTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 116 IIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~----~G~~~~d-~~~~~~~eav~~ADvViLavp 187 (462)
|||.|.+|.++|..|... ++ ++++.+.........+.+ .-+...+ ....+..+.+++||+||++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 799999999999999877 65 455555443322333322 1111000 001234578999999999764
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.63 Score=45.97 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=26.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
.+.|++ .+|.|||+|-+|..++.+|..+
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999988
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.31 E-value=1.3 Score=45.52 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCC-cCCHhhhhccCCeEEEee
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~~~~eav~~ADvViLav 186 (462)
.| ++|.|+|.|.+|...++-++.. |.+|++......+..+.+++.|.... +.. .....+.....|+||-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 57 8999999999999999999888 88876655554555566677786320 000 001122223568888877
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
... ..+++....++++-.++..
T Consensus 256 g~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 SAV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCH---HHHHHHHHHhcCCcEEEEe
Confidence 632 1334444556666554433
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.44 Score=49.24 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=41.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--Cceec--CCC-cC-CHhhhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEE--NGT-LG-DIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~--d~~-~~-~~~eav~~ADvViLa 185 (462)
+||+|||.|.+|.+.|..|... +.+.++++.+.......-.|.+. +.... +.. .. ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999655 11225555554422222222211 11000 000 11 225678999999998
Q ss_pred e
Q 012479 186 I 186 (462)
Q Consensus 186 v 186 (462)
-
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 7
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.67 Score=47.34 Aligned_cols=80 Identities=11% Similarity=0.165 Sum_probs=55.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+..+ ..+-.|.+...+ +.+..+.+++||+||.
T Consensus 149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~ 206 (287)
T PRK14181 149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKHP--DTNATVTLLHSQ-------------------SENLTEILKTADIIIA 206 (287)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHhCcC--CCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999976 789999999976500 001245543211 3467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-.. ++. ..++|+|++|++++
T Consensus 207 AvG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 207 AIGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 997542 232 34578999988875
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.2 Score=46.49 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=51.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH----cCceecCCCcCCHhhh-hccCCeEEE
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYET-ISGSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~ea-v~~ADvViL 184 (462)
++||+||| -|--|.-+.+-|... ..+++.....+..+-...... .|.....-...+.++. ..+||+||+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 47999999 567777766666543 134543332211110111111 1221000002233443 445899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|+|+..-.++..++.. .|..|+|.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999988888877643 4555777766
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.64 Score=50.10 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=45.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH---HHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~---~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
++| ++|+|+|+|.-|.+.++-|++. |.+|++.+.+..... ...++.+... . .....+.+.++|+||.
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 568 9999999999999999999999 999888774322111 1222222221 1 1223456778999887
Q ss_pred ee
Q 012479 185 LI 186 (462)
Q Consensus 185 av 186 (462)
.-
T Consensus 76 Sp 77 (468)
T PRK04690 76 SP 77 (468)
T ss_pred CC
Confidence 53
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.39 Score=49.96 Aligned_cols=168 Identities=15% Similarity=0.061 Sum_probs=89.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHHh-hhhhcCCcEEEEEec--CCchhHHHHHHcCceecCCCcCCHhhh-hccCCeEEEee
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLR--KGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds-~~~~g~G~~Vivg~r--~~~~s~~~A~~~G~~~~d~~~~~~~ea-v~~ADvViLav 186 (462)
.+|+|||. |..|.-+.+-|.++ ++ ..++..... ...+.....-. ... +.+.++. ..++|+||+++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~~~~~~~-~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGETLRFGGK-SVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCceEEECCc-ceE-----EEeCchhhccCCCEEEECC
Confidence 79999996 99999999988874 11 124332221 11222221000 112 2233333 26899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
|.....++.+++. +.|..|+|.++- + .+.++++ .+-|---.... +.++ ..+ +|+ .
T Consensus 75 p~~~s~~~~~~~~---~~g~~VIDlS~~---f------Rl~~~vP--~~lPEvn~~~l-~~i~--------~~~-iIA-n 129 (336)
T PRK08040 75 GREASAAYAEEAT---NAGCLVIDSSGL---F------ALEPDVP--LVVPEVNPFVL-ADYR--------NRN-IIA-V 129 (336)
T ss_pred CHHHHHHHHHHHH---HCCCEEEECChH---h------cCCCCCc--eEccccCHHHH-hhhc--------cCC-EEE-C
Confidence 9987777777654 358888888764 1 1111322 22332221111 1111 112 344 5
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v 325 (462)
+++..-++-+++.=+...|.. +.. ..+.-...||++-..++.+.+...
T Consensus 130 PgC~~t~~~laL~PL~~~~~i--------~~v---iV~t~qgvSGAG~~~~~~L~~qt~ 177 (336)
T PRK08040 130 ADSLTSQLLTAIKPLIDQAGL--------SRL---HVTNLLSASAHGKAAVDALAGQSA 177 (336)
T ss_pred CCHHHHHHHHHHHHHHHhCCC--------eEE---EEEeeccccccChhhHHHHHHHHH
Confidence 666666666665555554433 111 222334678888887777665544
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.82 Score=46.02 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=47.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC---CHhhhhccCCeEEEeec
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~eav~~ADvViLavp 187 (462)
|||.|+| .|.+|..+++.|.+. |++|++..|+.++. ......|+....+... +..++++++|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 599999999999998 99988777764332 2112235432111122 34567899999998764
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.99 Score=38.94 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=48.0
Q ss_pred cccchHHHHHHHHHHhhhhhcCCcEEEEEecCC---chhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecchhHH
Q 012479 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (462)
Q Consensus 118 G~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~---~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd~a~~ 192 (462)
|+|++|.+++..|...-+. .+++++...+++ ...+......... +.+.++.+. +.|+||=|++++...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDWAASFPDEAF-----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTHHHHHTHSCE-----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhhhhhcccccc-----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999876111 134443333332 1222222222223 578888888 899999999998887
Q ss_pred HHHHHHHhcCCCCcEEE
Q 012479 193 DNYEKIFSCMKPNSILG 209 (462)
Q Consensus 193 ~vl~eI~~~Lk~gaiL~ 209 (462)
+.+.++ |+.|.-|+
T Consensus 74 ~~~~~~---L~~G~~VV 87 (117)
T PF03447_consen 74 EYYEKA---LERGKHVV 87 (117)
T ss_dssp HHHHHH---HHTTCEEE
T ss_pred HHHHHH---HHCCCeEE
Confidence 777654 34566443
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.83 E-value=2.4 Score=44.87 Aligned_cols=170 Identities=15% Similarity=0.200 Sum_probs=91.9
Q ss_pred CCEEEEEcc-cchHHHHHH-HHHHhhhhhcCCcE---EEEEecCCchhHHHHHHcCceecCCCcCC--HhhhhccCCeEE
Q 012479 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGD--IYETISGSDLVL 183 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~-~Lrds~~~~g~G~~---Vivg~r~~~~s~~~A~~~G~~~~d~~~~~--~~eav~~ADvVi 183 (462)
|++|||||. |..|.-+.+ -|.+. .+. +.. .... ++-..- ..|......+.+ ..+..+++|+||
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss~-~sg~~~--~~f~g~~~~v~~~~~~~~~~~~Divf 70 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FSTS-QAGGAA--PSFGGKEGTLQDAFDIDALKKLDIII 70 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecch-hhCCcc--cccCCCcceEEecCChhHhcCCCEEE
Confidence 478999996 999999997 55555 443 433 2221 111110 111100001111 124457899999
Q ss_pred EeecchhHHHHHHHHHhcCCCC--cEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceE
Q 012479 184 LLISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g--aiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~a 261 (462)
+++|.....++..++.. .| .+|+|.+|. + ...+ +|..+-|--.....+..-. .|+..
T Consensus 71 ~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~---f------R~~~--dvplvvPEvN~e~i~~~~~-------~g~~i 129 (369)
T PRK06598 71 TCQGGDYTNEVYPKLRA---AGWQGYWIDAAST---L------RMKD--DAIIILDPVNRDVIDDALA-------NGVKT 129 (369)
T ss_pred ECCCHHHHHHHHHHHHh---CCCCeEEEECChH---H------hCCC--CCcEEcCCcCHHHHHhhhh-------cCCCE
Confidence 99999877777776543 57 567887764 2 1112 4445556443333322111 24433
Q ss_pred EEeeccCCCHHHHHHHHHHHHHhCCC-cccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHH
Q 012479 262 SFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (462)
Q Consensus 262 liav~qd~tgea~e~a~al~~aiG~~-~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v 325 (462)
|+ .++++.-+.-+++.=+...|.. +++-+| -..+||++...|+.+.+...
T Consensus 130 -Ia-nPnC~tt~~~laL~PL~~~~~i~~viVst------------~qavSGAG~~g~~eL~~qt~ 180 (369)
T PRK06598 130 -FV-GGNCTVSLMLMALGGLFKNDLVEWVSVMT------------YQAASGAGARNMRELLTQMG 180 (369)
T ss_pred -EE-cCChHHHHHHHHHHHHHhcCCceEEEEEe------------eecccccCHHHHHHHHHHHH
Confidence 33 5566666666666555555543 233332 23477888877766666544
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.82 Score=47.45 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=53.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHH-HHHHcCcee--------cCCC--cCCHhhhhccC
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTE--------ENGT--LGDIYETISGS 179 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~-~A~~~G~~~--------~d~~--~~~~~eav~~A 179 (462)
.||+|+| .|.+|..+.+.|.+. ..++++...+..+..-+ .....++.. .+-. ..+. +.++++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 77 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDV 77 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCC
Confidence 6899998 899999999988865 02354433233211100 110011100 0000 1133 445789
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|+|++++|.....++.+.+.. .|..+++.+|
T Consensus 78 DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred CEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 999999999877777655433 4666666665
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.72 Score=47.94 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhH----HHHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~----~~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| .||++||-+ ++..|++..+... |.++.+...+. .... +.+++.|.... ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999986 6788888888877 88877765431 1112 23344563210 157899999
Q ss_pred ccCCeEEEee
Q 012479 177 SGSDLVLLLI 186 (462)
Q Consensus 177 ~~ADvViLav 186 (462)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999743
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.63 E-value=2.5 Score=44.09 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=80.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc--E-EEEEe--cCCchhHHHHHHcCceecCCCcCC---HhhhhccCCeE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-VKVGL--RKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~--~-Vivg~--r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvV 182 (462)
++|||+| .|..|.-+.+.|.++ .+ . +.+.- |+..+.. ..-.|... .+.+ .....+++|++
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~------~f~~~~~~~~AS~rSaG~~~--~~f~~~~~---~v~~~~~~~~~~~~~Div 70 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER------HFPFEELVLLASARSAGKKY--IEFGGKSI---GVPEDAADEFVFSDVDIV 70 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc------CCCcceEEEEecccccCCcc--ccccCccc---cCccccccccccccCCEE
Confidence 7899998 699999999999886 43 2 22222 2222211 11112211 0111 12345689999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEE
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~al 262 (462)
+.+.+.....++.++.. +.|.+|++.++. + ..-+|+++| -|---.... ..|.+ +| .+
T Consensus 71 f~~ag~~~s~~~~p~~~---~~G~~VIdnsSa---~------Rm~~DVPLV--VPeVN~~~l-~~~~~------rg--~I 127 (334)
T COG0136 71 FFAAGGSVSKEVEPKAA---EAGCVVIDNSSA---F------RMDPDVPLV--VPEVNPEHL-IDYQK------RG--FI 127 (334)
T ss_pred EEeCchHHHHHHHHHHH---HcCCEEEeCCcc---c------ccCCCCCEe--cCCcCHHHH-Hhhhh------CC--CE
Confidence 99999888877777665 468888888764 1 112344433 443222111 12221 35 33
Q ss_pred EeeccCCCHHHHHHHH-HHHHHhCCCcccccch
Q 012479 263 FAVHQDVDGRATNVAL-GWSVALGSPFTFATTL 294 (462)
Q Consensus 263 iav~qd~tgea~e~a~-al~~aiG~~~viettf 294 (462)
|+ .+|++--.+-.++ -|....|..++.-||.
T Consensus 128 ia-npNCst~~l~~aL~PL~~~~~i~~v~VsTy 159 (334)
T COG0136 128 IA-NPNCSTIQLVLALKPLHDAFGIKRVVVSTY 159 (334)
T ss_pred EE-CCChHHHHHHHHHHHHHhhcCceEEEEEEe
Confidence 44 6666655554444 4455566555655543
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.7 Score=44.32 Aligned_cols=89 Identities=20% Similarity=0.182 Sum_probs=56.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHH-hhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrd-s~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViL 184 (462)
.| .+|.|+|.|.+|...++-++. . | .+|++..+. +...+.+++.|... ..++..+ ..|+||=
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~-~~k~~~a~~~~~~~------~~~~~~~~~g~d~viD 228 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKH-QEKLDLFSFADETY------LIDDIPEDLAVDHAFE 228 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCc-HhHHHHHhhcCcee------ehhhhhhccCCcEEEE
Confidence 36 899999999999988887775 3 3 356555444 44466676655431 1112222 4799998
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
++........+++....++++-.++..
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 887433344566666678887665543
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.4 Score=46.95 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=53.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh---h-hhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---e-av~~ADvViLavp 187 (462)
..|-|+|+|.+|..+++.|++. |.++++.+.. + .+...+.|.....+...+.+ + -+++|+.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d--~-~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL--G-LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc--h-hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5799999999999999999988 8777665543 1 23333344321111122222 1 3678999999998
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEEe
Q 012479 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-aiL~~a 211 (462)
++..-...-.....+.|+ +++.-+
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 876544332222333343 344433
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=90.54 E-value=0.66 Score=48.82 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=55.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC-------------------chhHHHHH---Hc-
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA- 160 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~-------------------~~s~~~A~---~~- 160 (462)
...|++ .+|.|||+|-.|..++.+|... |+ ++.+.++.. .+....++ +.
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 477888 9999999999999999999988 76 444443320 01111111 11
Q ss_pred -Cce--ecCCCc--CCHhhhhccCCeEEEeecchhHHHHHHHHH
Q 012479 161 -GFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (462)
Q Consensus 161 -G~~--~~d~~~--~~~~eav~~ADvViLavpd~a~~~vl~eI~ 199 (462)
.+. ...... .+..+.++++|+||-|+-......++.++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111 101111 134567899999999988777766777654
|
|
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.83 Score=47.53 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=48.8
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| .||++||-+ +...|++..+..- |.+|.+...+. +...+ .++..|.... ...++++++
T Consensus 152 ~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (331)
T PRK02102 152 PLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEAV 222 (331)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999997 7888988888877 88876654332 12222 2344564310 146889999
Q ss_pred ccCCeEEEe
Q 012479 177 SGSDLVLLL 185 (462)
Q Consensus 177 ~~ADvViLa 185 (462)
++||+|..-
T Consensus 223 ~~aDvvyt~ 231 (331)
T PRK02102 223 KGADVIYTD 231 (331)
T ss_pred CCCCEEEEc
Confidence 999999984
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.3 Score=43.67 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=56.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----CceecCCCcCCHhhhhccCCeEEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~eav~~ADvViL 184 (462)
+| ++|.-||+|+ | .++..+... |...+++.+.++...+.|++. ++.. ..+..+.-...|+|+.
T Consensus 119 ~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vva 185 (250)
T PRK00517 119 PG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIVA 185 (250)
T ss_pred CC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEEE
Confidence 56 8999999999 5 344455555 554356777777666665543 3310 0000000004799887
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
-+....+..+++++...|+||..++++
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 665556677888899999999877665
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.74 Score=48.20 Aligned_cols=89 Identities=12% Similarity=0.164 Sum_probs=55.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHH-hhhhhcCCcE---EEEEe--cCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGL--RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrd-s~~~~g~G~~---Vivg~--r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
.+|||||. |..|.-+.+-|.+ . .+. +.... +...+......+ ..... ..+. +..++.|+||+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~-~~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKI-NSFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCH-HHhcCCCEEEE
Confidence 68999996 9999999998884 4 443 32222 222222211111 11110 1233 34578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++|.....++..+.. +.|..|+|.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999987777777653 468888888764
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.14 E-value=1 Score=50.54 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
.| ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~ 359 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRH 359 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecC
Confidence 57 9999999999999999999998 9988887653
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.87 Score=46.75 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=55.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCC----cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCC
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
..++| |+|.|||-+ ..|..++.-|.+. | -.|.+...+ +.+.++.+++||
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~~~~~atVtv~hs~-------------------T~~l~~~~~~AD 210 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK------GPGANATVTIVHTR-------------------SKNLARHCQRAD 210 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc------ccCCCCEEEEecCC-------------------CcCHHHHHhhCC
Confidence 46899 999999965 7899999998765 3 345553221 236778899999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||.++.-.. ++. ...+|+|++|++++
T Consensus 211 IvVsAvGkp~---~i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 211 ILIVAAGVPN---LVK--PEWIKPGATVIDVG 237 (297)
T ss_pred EEEEecCCcC---ccC--HHHcCCCCEEEecC
Confidence 9999986433 222 34578999988864
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=1 Score=47.88 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=46.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-hHHHHHH--cCceecCCCcCC-HhhhhccCCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGD-IYETISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-s~~~A~~--~G~~~~d~~~~~-~~eav~~ADvVi 183 (462)
+++ ++|.|+|.|..|.+.|+-|++. |..|.+.+..... ..+..++ .|+... ... ..+...++|+||
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~---~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFY---TGRLKDALDNGFDILA 72 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEE---eCCCCHHHHhCCCEEE
Confidence 467 9999999999999999999999 9988776554322 2222222 366431 111 233456899999
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
...
T Consensus 73 ~sp 75 (445)
T PRK04308 73 LSP 75 (445)
T ss_pred ECC
Confidence 854
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.8 Score=45.21 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHHH----HHcCceecCCCcCCHhhhhc
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~A----~~~G~~~~d~~~~~~~eav~ 177 (462)
.++| .||++||- .++..|++..+..- |.+|.+...+. ....+.+ +..|.... ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 4788 99999997 57888888888776 88877764432 1222333 33453210 1568899999
Q ss_pred cCCeEEEee
Q 012479 178 GSDLVLLLI 186 (462)
Q Consensus 178 ~ADvViLav 186 (462)
+||+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999843
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=90.01 E-value=1.3 Score=46.77 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=61.4
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~----------G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| ++|+|+|+ -+-...++..|.+. |.+|.+.+..-.. ... +..+. +.+..+++
T Consensus 310 ~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~~-~~~~~------~~~~~~~~ 374 (411)
T TIGR03026 310 PLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EEV-KGLPL------IDDLEEAL 374 (411)
T ss_pred cccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hhh-hhccc------CCCHHHHH
Confidence 3688 99999998 55777888888888 9888776654222 111 11221 35778999
Q ss_pred ccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEE
Q 012479 177 SGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGL 210 (462)
Q Consensus 177 ~~ADvViLavpd~a~~~-vl~eI~~~Lk~gaiL~~ 210 (462)
++||+|++++.-....+ -++.+...+++ .+|.|
T Consensus 375 ~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D 408 (411)
T TIGR03026 375 KGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVD 408 (411)
T ss_pred hCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEe
Confidence 99999999999877765 35567766654 35555
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.2 Score=46.77 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=49.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcC---ceecCCCcCCHhhhhcc
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAG---FTEENGTLGDIYETISG 178 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G---~~~~d~~~~~~~eav~~ 178 (462)
.++| .||++||-+ ++.+|++..+..- |.++.+.... .....+.+++.| +.. ..++++++++
T Consensus 191 ~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~~ 259 (348)
T PLN02342 191 RLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVKG 259 (348)
T ss_pred CcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhCC
Confidence 4788 999999974 6888888888776 8887765433 223344555555 332 5788999999
Q ss_pred CCeEEEee
Q 012479 179 SDLVLLLI 186 (462)
Q Consensus 179 ADvViLav 186 (462)
||+|....
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999874
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.2 Score=46.54 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhH----HHHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~----~~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| .||++||-+ ++..|++..+..- |.++.+...+. .... +.+++.|.... ...++++++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999986 7899999988877 88877764432 1112 23444563221 157899999
Q ss_pred ccCCeEEEe
Q 012479 177 SGSDLVLLL 185 (462)
Q Consensus 177 ~~ADvViLa 185 (462)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999975
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.64 Score=47.29 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=66.3
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcC-CcEEEEEecCCchhHHHHHHcC-----ceecCCCcCCHhhhhccCCeEEEee
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~-G~~Vivg~r~~~~s~~~A~~~G-----~~~~d~~~~~~~eav~~ADvViLav 186 (462)
-..|+|.|.|+..+...-.+. .+ =.+|.|+++....+.+.|+..- +..+-....+.+++++.+|+|+-++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred EEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 478999999999887665543 01 1278999999888788877321 1111112456889999999999998
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHH
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~ 217 (462)
+...-. ++ ...++||+.|..+++|+-+
T Consensus 216 lstePi-lf---gewlkpgthIdlVGsf~p~ 242 (333)
T KOG3007|consen 216 LSTEPI-LF---GEWLKPGTHIDLVGSFKPV 242 (333)
T ss_pred ccCCce-ee---eeeecCCceEeeeccCCch
Confidence 853111 11 2457899999999999753
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=89.73 E-value=2.7 Score=44.11 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=63.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCc-CCHhhhh------ccCC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETI------SGSD 180 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~-~~~~eav------~~AD 180 (462)
..| .+|.|+|.|.+|...++-++.. |.++++..+.+.+..+.|++.|+...+... .+..+.+ ...|
T Consensus 184 ~~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 184 GPG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCc
Confidence 346 8999999999999999988888 887655555555678889999874211111 1222222 2479
Q ss_pred eEEEeecchhH-----------HHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~-----------~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||-++-.... ...+++....+++|-.|+..+
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 99988875421 235565556777776655443
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.52 E-value=1.6 Score=44.59 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
...|+. .+|.|||+|-.|..++.+|..+
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 477888 9999999999999999999998
|
|
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.3 Score=47.19 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEcc-----c---chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHH----HHHcCceecCCCcC
Q 012479 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (462)
Q Consensus 107 ~l~gikkIgIIG~-----G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~~ 170 (462)
.++| +||+|+|- | ++..|++..+..- |.+|.+...+. +...+. +++.|.... ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 4778 89999985 4 6678888888776 88877765442 222233 444563210 147
Q ss_pred CHhhhhccCCeEEEee
Q 012479 171 DIYETISGSDLVLLLI 186 (462)
Q Consensus 171 ~~~eav~~ADvViLav 186 (462)
+++|++++||+|...+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.95 Score=52.08 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=46.4
Q ss_pred CEEEEEcccchHHHH-HHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~Ai-A~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
++|.|||+|-.|.+- |+-|++. |.+|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 679999999999997 9999999 99987766543333344455687642 12233567789998864
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.2 Score=46.16 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=53.5
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCce---------ec------CCC---cC---
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFT---------EE------NGT---LG--- 170 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~---------~~------d~~---~~--- 170 (462)
||||+|+|.+|+.+.+.|.++. .+.+++|+.-++. +.+......+++-+ .+ ++. +.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~--~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG--ERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC--CCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 6999999999999999988650 0013565443332 23333333333210 00 000 11
Q ss_pred CHhhh---hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 171 ~~~ea---v~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++++. -.++|+|+.|++.....+.... +++.|+.+++.+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLFS 120 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEec
Confidence 23222 1478999999998877665543 455676655444
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=89.19 E-value=1.1 Score=43.28 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.2
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc
Q 012479 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (462)
Q Consensus 106 ~~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~ 151 (462)
+-.++ |+|.|+| .|.+|..+++.|.+. |++|++..|..+
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~ 52 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVD 52 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHH
Confidence 45566 9999999 599999999999998 998877666543
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.11 E-value=2 Score=43.47 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=69.8
Q ss_pred CCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-hH-H---HH---HHcCceecCCCcCCHhhhhccCCe
Q 012479 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF-A---EA---RAAGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-s~-~---~A---~~~G~~~~d~~~~~~~eav~~ADv 181 (462)
++||+|+|+ |.||..+.+.+... .++++..+..+.+. +. . .+ ...|+.. ..+...+..++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 479999998 99999999999876 14565555544322 11 1 11 1123332 2345667889999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCC
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
+|=-+-|+...+.++....+ +-.+|+=..||+-..++. ...+.+.+.+| .+||..
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~--~~~lVIGTTGf~~e~~~~-l~~~a~~v~vv-~a~NfS 127 (266)
T COG0289 73 LIDFTTPEATLENLEFALEH--GKPLVIGTTGFTEEQLEK-LREAAEKVPVV-IAPNFS 127 (266)
T ss_pred EEECCCchhhHHHHHHHHHc--CCCeEEECCCCCHHHHHH-HHHHHhhCCEE-Eeccch
Confidence 99999998888887754432 122566677886433221 11122334444 567754
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.8 Score=48.61 Aligned_cols=78 Identities=18% Similarity=0.125 Sum_probs=51.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EE--EEEecCCc------hhHHHHHHc--Cc--eecC-CCcCCHhh
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VV--KVGLRKGS------RSFAEARAA--GF--TEEN-GTLGDIYE 174 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~V--ivg~r~~~------~s~~~A~~~--G~--~~~d-~~~~~~~e 174 (462)
+. .||+|||.|.+|.++..+|..+ |+ ++ ++.+...+ +..+.|++. ++ ...+ ....+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 55 8999999999999999999999 87 22 22232211 334556652 21 1101 11345778
Q ss_pred hhccCCeEEEeecchhHHH
Q 012479 175 TISGSDLVLLLISDAAQAD 193 (462)
Q Consensus 175 av~~ADvViLavpd~a~~~ 193 (462)
+++..|+|+.++-+....+
T Consensus 201 v~~~~DiVi~vsDdy~~~~ 219 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDD 219 (637)
T ss_pred hhcCCcEEEEECCCCChHH
Confidence 9999999999988655543
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=0.95 Score=46.90 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.9
Q ss_pred CEEEEEcccchHHHHHHHHHHh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds 133 (462)
++|+|||+|++|..+++.|++.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 4899999999999999999873
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.92 E-value=2.6 Score=43.25 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=61.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-----CceecCCC---cCCHhhh---hc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----GFTEENGT---LGDIYET---IS 177 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-----G~~~~d~~---~~~~~ea---v~ 177 (462)
.. ++|+.||+|..|.+-..-++...+ + -.+++.+.++...+.|++. |+. +.. ..|..+. ..
T Consensus 123 ~p-~~VldIGcGpgpltaiilaa~~~p----~-~~~~giD~d~~ai~~Ar~~~~~~~gL~--~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 123 VP-TKVAFVGSGPLPLTSIVLAKHHLP----T-TSFHNFDIDPSANDVARRLVSSDPDLS--KRMFFHTADVMDVTESLK 194 (296)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHhcCC----C-CEEEEEeCCHHHHHHHHHHhhhccCcc--CCcEEEECchhhcccccC
Confidence 44 899999999987754433333211 1 1356888877666666652 221 000 1222222 35
Q ss_pred cCCeEEEeec----chhHHHHHHHHHhcCCCCcEEEE--eccc
Q 012479 178 GSDLVLLLIS----DAAQADNYEKIFSCMKPNSILGL--SHGF 214 (462)
Q Consensus 178 ~ADvViLavp----d~a~~~vl~eI~~~Lk~gaiL~~--a~G~ 214 (462)
+-|+|++.+= .....++++.+..+|+||.++.. +||.
T Consensus 195 ~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 195 EYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred CcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 7899999952 24557899999999999998654 4554
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.4 Score=46.62 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
...|+. .+|.|||+|-.|..+|.+|..+
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999988
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.96 Score=47.71 Aligned_cols=65 Identities=26% Similarity=0.287 Sum_probs=43.8
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHH----HHH-HcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~----~A~-~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
||.|||+|-.|.++|+-|++. |.+|.+.+........ ..+ ..|+... .....+.++++|+||..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~---~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLH---TGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEE---ecCchHHhccCCEEEECC
Confidence 589999999999999999999 9998776654332111 122 2476531 112245678899887753
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.76 Score=47.70 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=54.4
Q ss_pred EEEEEc-ccchHHHHHHHHHHhhhhhcCCcE---EEEEecC--CchhHHHHHHcCceecCCCcCCH-hhhhccCCeEEEe
Q 012479 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~---Vivg~r~--~~~s~~~A~~~G~~~~d~~~~~~-~eav~~ADvViLa 185 (462)
||+||| .|..|..+.+-|.++ ++. +.+..+. ..+... ..|... .+.+. .+.++++|+||++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~---~~~~~~~~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKEL---EVNEAKIESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeE---EEEeCChHHhcCCCEEEEC
Confidence 689999 899999999988876 553 2222222 122221 112111 01111 2445899999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+|.....++.+++. +.|..|++.++.
T Consensus 69 ~g~~~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 69 AGGSVSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred CCHHHHHHHHHHHH---HCCCEEEECCHH
Confidence 99998888776653 457777777764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=88.51 E-value=0.99 Score=46.54 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEEEcccchHHHHHHHHHHh
Q 012479 113 QIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds 133 (462)
||.|||+|-.|..+|++|..+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999999988
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.47 E-value=2 Score=44.22 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=46.2
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
.++| .||++||- +++..|++..+..- |+++.+...++-.... . ..+.. ..+++|++++||+|.
T Consensus 153 ~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~~----~~d~~ea~~~aDvvy 218 (305)
T PRK00856 153 RLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYGV----HTDLDEVIEDADVVM 218 (305)
T ss_pred CCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceEE----ECCHHHHhCCCCEEE
Confidence 4788 99999997 58999999999887 8887776543211000 0 01232 578999999999887
Q ss_pred Ee
Q 012479 184 LL 185 (462)
Q Consensus 184 La 185 (462)
..
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 63
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=88.32 E-value=1.3 Score=46.99 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=54.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecC--C-----------------chhHHHHHH---c-
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-----------------SRSFAEARA---A- 160 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~--~-----------------~~s~~~A~~---~- 160 (462)
...|+. .+|.|||+|-.|..++++|..+ |+ ++++.+.. . .+....++. .
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 76 33333221 0 011111111 1
Q ss_pred -Ccee--cCCCc--CCHhhhhccCCeEEEeecchhHHHHHHHHH
Q 012479 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (462)
Q Consensus 161 -G~~~--~d~~~--~~~~eav~~ADvViLavpd~a~~~vl~eI~ 199 (462)
.+.. ..... .+..+.++++|+||.|+=+.....++.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1110 01111 123467899999999988777766776643
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.23 E-value=0.94 Score=48.46 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi 144 (462)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 47899 9999999999999999999988 88876
|
|
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=1.6 Score=44.87 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=50.1
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHH-HHHcCceecCCCcCCHhhhhccCC
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE-ARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~-A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
.++| .||++||- ++..+|++..+..- |.+|.+..... ....+. +++.|.... ...+.++++++||
T Consensus 149 ~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~aD 219 (304)
T PRK00779 149 SLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGAD 219 (304)
T ss_pred CcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCCC
Confidence 4788 89999997 78999999998877 88877765432 111222 556674320 1468899999999
Q ss_pred eEEEe
Q 012479 181 LVLLL 185 (462)
Q Consensus 181 vViLa 185 (462)
+|...
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 99985
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.19 E-value=3.4 Score=42.99 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=56.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCC---HhhhhccCCeEEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~---~~eav~~ADvViL 184 (462)
.| .+|.|.|.|.+|...++-++.. |.+|++..+.+++..+.+++.|.... + ..+ ..+.....|+|+-
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~--~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV--TTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc--CcCHHHHHHhhCCCcEEEE
Confidence 47 8999999999999999999888 88876665554454677777886320 0 011 1222335788888
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
++.... .+.+....++++-.++.
T Consensus 249 ~~G~~~---~~~~~~~~l~~~G~iv~ 271 (375)
T PLN02178 249 TVSAEH---ALLPLFSLLKVSGKLVA 271 (375)
T ss_pred CCCcHH---HHHHHHHhhcCCCEEEE
Confidence 876432 23333444556555443
|
|
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=88.16 E-value=1 Score=44.16 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=55.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHHHHHcCceecCCCcCCHhhh-----hccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-----ISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea-----v~~ADvV 182 (462)
.|++|||.||+|.-+.-.+.++ |- .+.+|.+..+.-+..|.+.|+.... ...+-+ .++-|+|
T Consensus 5 ~kvaiigsgni~tdlm~k~lr~------g~~le~~~mvgidp~sdglaraarlgv~tt~---egv~~ll~~p~~~di~lv 75 (310)
T COG4569 5 RKVAIIGSGNIGTDLMIKILRH------GQHLEMAVMVGIDPQSDGLARAARLGVATTH---EGVIGLLNMPEFADIDLV 75 (310)
T ss_pred ceEEEEccCcccHHHHHHHHhc------CCcccceeEEccCCCccHHHHHHhcCCcchh---hHHHHHHhCCCCCCcceE
Confidence 5899999999999887777666 32 5788999888888888888886311 111111 2455699
Q ss_pred EEeecchhHHHHHHHH
Q 012479 183 LLLISDAAQADNYEKI 198 (462)
Q Consensus 183 iLavpd~a~~~vl~eI 198 (462)
|=+++..++.+-...+
T Consensus 76 fdatsa~~h~~~a~~~ 91 (310)
T COG4569 76 FDATSAGAHVKNAAAL 91 (310)
T ss_pred EeccccchhhcchHhH
Confidence 9999988886644433
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.5 Score=45.10 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=54.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..+|.-|.+... ..+..|.+... + +.++++.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~aTVtvchs---~----------------T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKAD--GGNATVTVCHS---R----------------TDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHhcCcc--CCCCEEEEeCC---C----------------CCCHHHHHhhCCEEEE
Confidence 36899 999999966 789999998875400 00235555322 1 2356788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|+--.. ++. ..++|+|++|++++
T Consensus 211 AvGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 886332 222 24578999988864
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=1.8 Score=45.07 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcCceecCCCcCCHhhhhccC
Q 012479 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (462)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~eav~~A 179 (462)
.++| .||++||= +++..|++..|...+ |.++.+.... .....+.+++.|.... .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMYK-----NVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHhc-----CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 5788 99999997 588999888765331 6777665433 2233455666564321 157889999999
Q ss_pred CeEEEe
Q 012479 180 DLVLLL 185 (462)
Q Consensus 180 DvViLa 185 (462)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.96 E-value=4.2 Score=38.68 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
++| ++|.|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 4 ~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 567 89999996 89999999999988 98887766653
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=87.89 E-value=1.7 Score=44.56 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcCceecCCCcCCHhhhhccC
Q 012479 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (462)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~eav~~A 179 (462)
.++| .||++||-+ +...|++..+...+ |.++.+...+ .....+.+++.|.... ...++++++++|
T Consensus 148 ~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDG-IKVGLVGDLANGRTVRSLAYLLAKYE-----DVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASKC 219 (306)
T ss_pred CcCC-CEEEEECCCCCChhHHHHHHHHHhcC-----CCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCCC
Confidence 4788 999999976 57899998876531 6677665443 2233455666565321 146889999999
Q ss_pred CeEEEe
Q 012479 180 DLVLLL 185 (462)
Q Consensus 180 DvViLa 185 (462)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999983
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.77 E-value=0.8 Score=48.28 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=42.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCceecC-CCcCCHhhhhccCCeEEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~d-~~~~~~~eav~~ADvViL 184 (462)
+++|||||-|-.|.=++..-+.- |+++++-+.. +......| ......+ +....+.++++.||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~~~~PA~~va--~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPDADAPAAQVA--DRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCCCCCchhhcc--cceeecCCCCHHHHHHHHhhCCEEEE
Confidence 38999999999999999998887 9988775533 22222222 2222100 001235678889998854
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=87.75 E-value=2 Score=43.82 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=29.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
+.|+. .+|.|||+|-.|..+|+||..+ |+ ++.+.+
T Consensus 15 ~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 15 KKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 56667 8999999999999999999988 77 454444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.4 Score=46.88 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=44.5
Q ss_pred EEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+|-|||.|-.|.+ +|+-|++. |.+|.+.+.......+..++.|+... .....+.++++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 4789999999998 99999999 99987766543333344455677641 11223456789998874
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.66 E-value=0.99 Score=47.03 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=42.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceecCCCcCC---HhhhhccCCeEEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvViL 184 (462)
+++|+|||.|-.|.-+++.+++. |++|++.+.... .....+ +..... ...| +.+.++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~~a--d~~~~~--~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQVA--DEVIVA--DYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhHhC--ceEEec--CCCCHHHHHHHHhcCCEEEe
Confidence 48999999999999999999998 999877655422 222222 222210 1223 4557789998743
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=87.61 E-value=5 Score=40.94 Aligned_cols=93 Identities=23% Similarity=0.294 Sum_probs=55.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhh----hh--ccCCe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~e----av--~~ADv 181 (462)
+| .+|.|+|.|.+|...++-++.. |.+.++..+.+.+..+.+++.|.... +....+..+ .. ...|+
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 46 8999999999999999988888 87533444444556788888886210 100112212 12 14688
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|+=++-.. ..+++....++++-.++..
T Consensus 249 vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 88777632 2233333455666555544
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=87.57 E-value=2.4 Score=45.92 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=30.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r 148 (462)
.-.| ++|+|||.|..|.+.|..|++. |++|++..+
T Consensus 140 ~~~~-~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~ 174 (485)
T TIGR01317 140 KRTG-KKVAVVGSGPAGLAAADQLNRA------GHTVTVFER 174 (485)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEec
Confidence 3457 8999999999999999999998 888877654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=87.56 E-value=4.6 Score=39.04 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=57.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceecCCCcCCHhhh--hccCCeEEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea--v~~ADvViL 184 (462)
-+| .+|.|.|.|.+|.+..+.++.. |.+ |++ .+.+.+..+.+++.|.. +.......+. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~-~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVG-VDPDAARRELAEALGPA--DPVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEE-ECCCHHHHHHHHHcCCC--ccccccchhhhcCCCCCEEEE
Confidence 356 8999999999999999888887 877 554 44444456788888721 1111111111 135799998
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.... .+.+....++++..++..+
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEEe
Confidence 766432 3444555666666555443
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.52 E-value=2.1 Score=46.14 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=49.2
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHHHHHcCceecCCCcCCHhhhhccCC
Q 012479 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 108 l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
++| +||++||- +++..|++..+...+ |.++.+...+. +...+.+++.|.... .+.+++|++++||
T Consensus 239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~AD 310 (429)
T PRK11891 239 VDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGAD 310 (429)
T ss_pred cCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCCC
Confidence 788 99999998 489999998876421 77776654332 233455555564321 1478899999999
Q ss_pred eEEEee
Q 012479 181 LVLLLI 186 (462)
Q Consensus 181 vViLav 186 (462)
+|....
T Consensus 311 VVYt~~ 316 (429)
T PRK11891 311 VVYATR 316 (429)
T ss_pred EEEEcC
Confidence 999843
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.52 E-value=2.4 Score=47.67 Aligned_cols=73 Identities=25% Similarity=0.206 Sum_probs=49.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCceecCC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~d~ 167 (462)
-.+ ++|+|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 456 8999999999999999999998 888877765321 1134455667643111
Q ss_pred Cc----CCHhhhhccCCeEEEeec
Q 012479 168 TL----GDIYETISGSDLVLLLIS 187 (462)
Q Consensus 168 ~~----~~~~eav~~ADvViLavp 187 (462)
+. .+.++.....|.||+++-
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcC
Confidence 11 123444456899999885
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=87.49 E-value=6.8 Score=36.99 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=56.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhh-----hccCCe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~ea-----v~~ADv 181 (462)
.+| .+|.|+|.|.+|.+.++-++.. |.+|++..+. ....+.+++.|.... +....+..+. -+..|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 456 8999999999999999988887 8777665544 344566666664310 1001112221 246899
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|+.++... ..+..+...++++..++..+
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 99888763 23344445555655554443
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=87.49 E-value=3.9 Score=43.37 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=58.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc---------CceecCCC----cCCHhhh
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGT----LGDIYET 175 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~---------G~~~~d~~----~~~~~ea 175 (462)
.+.++|.|||+| .|.+....|+.. +...++..+.++...+.|++. ++. |.. ..|..+.
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~--DpRV~vvi~Da~~f 219 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFF--DNRVNVHVCDAKEF 219 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHhccccchhccccCC--CCceEEEECcHHHH
Confidence 334899999998 455554445433 343455666677777888752 111 100 2333333
Q ss_pred h----ccCCeEEEeecchhH--------HHHHHHHHhcCCCCcEEEEecc
Q 012479 176 I----SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 176 v----~~ADvViLavpd~a~--------~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+ ..-|+||+=.||... .+.++.+...|+||-+++.-++
T Consensus 220 L~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 220 LSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 3 245999999876422 4577889999999998665444
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.47 E-value=3.7 Score=39.44 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE-
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL- 184 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL- 184 (462)
.++| |++.|+|. |-+|.++++.|.+. |.+|++..++..+..+.....+ ...+.+
T Consensus 4 ~l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~~~~~~~l~~~~-----------------~~~~~~D 59 (255)
T PRK06463 4 RFKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSAENEAKELREKG-----------------VFTIKCD 59 (255)
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHhCC-----------------CeEEEec
Confidence 3578 99999995 79999999999998 9888766554332222111111 111111
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
...+....++++++...+.+=.+|+..+|+
T Consensus 60 l~~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 60 VGNRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 123444556777766555333356677765
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=87.43 E-value=1.5 Score=46.50 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=43.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-hHHHHHH--cCceecCCCcC-CHhhhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLG-DIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-s~~~A~~--~G~~~~d~~~~-~~~eav~~ADvViLa 185 (462)
-+|.|||+|-.|.++|+-|++. |.+|.+.+..... ..+..++ .|+... .. ...+.+.++|+||..
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~---~~~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELR---CGGFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEE---eCCCChHHhcCCCEEEEC
Confidence 4799999999999999999999 9988776654322 2222333 366531 11 234556789988764
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=87.33 E-value=7.4 Score=32.62 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=54.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH----cCceecCCCcCCH----hhhhccCC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDI----YETISGSD 180 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~----~eav~~AD 180 (462)
++ ++|.-||+|.-. ++..+.+... +.+ +++.+.++...+.+++ .+.....-...+. ....+..|
T Consensus 19 ~~-~~vldlG~G~G~--~~~~l~~~~~----~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGSGS--ITIEAARLVP----NGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCCCH--HHHHHHHHCC----Cce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 35 789999999933 3333433300 224 4666665554544432 3321000001121 12235789
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
+|++.-++....++++++...|++|..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987777777899999999999887653
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.29 E-value=1.7 Score=46.36 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=51.8
Q ss_pred cCCCCEEEEEccc----------chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--CceecCCCcCCHhhh
Q 012479 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (462)
Q Consensus 108 l~gikkIgIIG~G----------~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~d~~~~~~~ea 175 (462)
|+| |+|||.|+- +-...++..|.+. |.+|++++.. ..+.+... ++.. ..+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~---a~~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPV---AMENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECch---hhHHHHhcCCCceE----eCCHHHH
Confidence 889 999999973 3345566666666 8888776543 22333322 1333 5789999
Q ss_pred hccCCeEEEeecchhHHHHH
Q 012479 176 ISGSDLVLLLISDAAQADNY 195 (462)
Q Consensus 176 v~~ADvViLavpd~a~~~vl 195 (462)
+++||++++++-.+...++=
T Consensus 374 ~~~aDaivi~tew~ef~~~d 393 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLD 393 (414)
T ss_pred HhhCCEEEEeccHHHHhccC
Confidence 99999999999987776643
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=87.25 E-value=3.5 Score=41.39 Aligned_cols=92 Identities=21% Similarity=0.171 Sum_probs=55.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceec-CCCcCCHh---hhhc--cCC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSD 180 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~---eav~--~AD 180 (462)
..| .+|.|+|.|.+|...++-++.. |.+ |++. ..+++..+.+++.|.... +....+.+ +... ..|
T Consensus 162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~-~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGV-DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 347 8999999999999999999888 887 6554 444455777888886310 10001111 2222 478
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
+||-++..... +.+....++++..++.
T Consensus 234 ~vid~~g~~~~---~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 234 VAIECSGNTAA---RRLALEAVRPWGRLVL 260 (339)
T ss_pred EEEECCCCHHH---HHHHHHHhhcCCEEEE
Confidence 88888775433 2232334555555443
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=87.19 E-value=0.83 Score=47.50 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
|.+|.|||.|.+|.+.|..|.+. |.+|++..+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 46899999999999999999998 99998877653
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=87.17 E-value=4.6 Score=41.48 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=53.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc-----cCCe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~-----~ADv 181 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++ .+.+++..+.+++.|.... +....+..+.+. ..|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~-~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVA-VDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEE-EcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 46 8999999999999999988888 88 4544 4444556788888886320 100011112121 3688
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEE
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
||-++.... .+......++++-.++
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv 287 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTV 287 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEE
Confidence 888775321 2333333455554443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=87.01 E-value=2.2 Score=45.87 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=31.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
..-.+ ++|+|||.|..|.+.|..|++. |++|++..+.
T Consensus 139 ~~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~ 175 (471)
T PRK12810 139 VKRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERA 175 (471)
T ss_pred cCCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecC
Confidence 33467 8999999999999999999998 8888777653
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.93 E-value=3.8 Score=44.19 Aligned_cols=81 Identities=19% Similarity=0.077 Sum_probs=53.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
-.|+| ++|.|||.|..+..=++.|.+. |-+|.|.-.. .++..+.+.+..+...... .. .+-++++++||.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~-~~-~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGP-FD-ESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-CC-hHHhCCCEEEEE
Confidence 56899 9999999999999999999988 8777665433 2232233332222211111 12 245789999999
Q ss_pred eecchhHHHHH
Q 012479 185 LISDAAQADNY 195 (462)
Q Consensus 185 avpd~a~~~vl 195 (462)
||.|...-+-+
T Consensus 79 at~d~~~n~~i 89 (457)
T PRK10637 79 ATDDDAVNQRV 89 (457)
T ss_pred CCCCHHHhHHH
Confidence 99998765433
|
|
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.89 E-value=4.7 Score=42.35 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=54.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH----------hhhhc-
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI----------YETIS- 177 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~----------~eav~- 177 (462)
.| .+++|+|+|-+|.|-.++++.. |-..|++.+.+....+.|++.|.+. +.+. .++..
T Consensus 185 ~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~----~vn~~~~~~vv~~i~~~T~g 253 (366)
T COG1062 185 PG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATH----FVNPKEVDDVVEAIVELTDG 253 (366)
T ss_pred CC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCce----eecchhhhhHHHHHHHhcCC
Confidence 34 6899999999999999999988 7777788888888899999999864 2222 22233
Q ss_pred cCCeEEEeecchh
Q 012479 178 GSDLVLLLISDAA 190 (462)
Q Consensus 178 ~ADvViLavpd~a 190 (462)
.+|.+|-++-...
T Consensus 254 G~d~~~e~~G~~~ 266 (366)
T COG1062 254 GADYAFECVGNVE 266 (366)
T ss_pred CCCEEEEccCCHH
Confidence 6889988886543
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=86.83 E-value=2.4 Score=44.56 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=47.9
Q ss_pred ccCCCCEEEEEccc--------chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHH----HHHcCceecCCCcC
Q 012479 107 AFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAGFTEENGTLG 170 (462)
Q Consensus 107 ~l~gikkIgIIG~G--------~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~----A~~~G~~~~d~~~~ 170 (462)
.|+| +||+|+|.| ++..|++..+... |.++.+...+ .+...+. +++.|.... .+.
T Consensus 167 ~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~ 237 (357)
T TIGR03316 167 NLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IVN 237 (357)
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 4678 899999853 4557788888776 8887776543 2222333 344564310 157
Q ss_pred CHhhhhccCCeEEEee
Q 012479 171 DIYETISGSDLVLLLI 186 (462)
Q Consensus 171 ~~~eav~~ADvViLav 186 (462)
+++|++++||+|..-.
T Consensus 238 d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHhCCCCEEEECC
Confidence 8999999999999874
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=4.1 Score=41.22 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=36.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (462)
.| .+|.|.|.|.+|...++-++.. |.++++....+....+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence 57 8999999999999999999888 88644444444455667777775
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.81 E-value=2 Score=45.50 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=43.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh-HHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+.+ ++|.|||+|-.|.+.+.-|++. |.+|.+.+...... .+. .+.|+.... -....+.+++.|+||..
T Consensus 4 ~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~-l~~g~~~~~--~~~~~~~~~~~d~vv~s 72 (438)
T PRK03806 4 YQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDK-LPENVERHT--GSLNDEWLLAADLIVAS 72 (438)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHH-HhcCCEEEe--CCCCHHHhcCCCEEEEC
Confidence 456 8999999999999999988888 98887665433221 222 233764310 01233456778976654
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=86.78 E-value=2.2 Score=39.17 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=48.8
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH---hhhhccCCeEEEeecch
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETISGSDLVLLLISDA 189 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~eav~~ADvViLavpd~ 189 (462)
++.|+|.|..|..++..|+++ |++++...+.+.... ...-.|+.. +.+. .+..++.+.+++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pv----lg~~~~l~~~~~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPV----LGGDEDLLRYPPDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccE----ECCHHHHhhhcccccEEEEEcCCH
Confidence 478999999999999999988 998776665533211 112245543 2233 33344568899999754
Q ss_pred hH-HHHHHHHHh
Q 012479 190 AQ-ADNYEKIFS 200 (462)
Q Consensus 190 a~-~~vl~eI~~ 200 (462)
.. .++++.+..
T Consensus 70 ~~~~~i~~~l~~ 81 (201)
T TIGR03570 70 KLRRRLFEKLKA 81 (201)
T ss_pred HHHHHHHHHHHh
Confidence 43 455555543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=86.75 E-value=2.1 Score=43.95 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHH----HHHcCceecCCCcCCHhhhhc
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~~~~~eav~ 177 (462)
.++| .||++||- .+...|++..+..- |.+|.+...+. ....+. +.+.|.... ...+.+++++
T Consensus 145 ~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~ 215 (304)
T TIGR00658 145 KLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAVK 215 (304)
T ss_pred CCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHhC
Confidence 3788 89999996 68889999888877 88877765332 122222 344563210 1468899999
Q ss_pred cCCeEEEe
Q 012479 178 GSDLVLLL 185 (462)
Q Consensus 178 ~ADvViLa 185 (462)
+||+|...
T Consensus 216 ~aDvvy~~ 223 (304)
T TIGR00658 216 GADVIYTD 223 (304)
T ss_pred CCCEEEEc
Confidence 99999985
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=86.72 E-value=3.4 Score=41.99 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=36.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (462)
+| .+|.|+|.|.+|...++-++.. |.+|++..+ +++..+.+++.|+
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~-~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDI-DPEKLEMMKGFGA 211 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcC-CHHHHHHHHHhCC
Confidence 46 8999999999999999999988 887655444 4455778888876
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.59 E-value=4.1 Score=42.24 Aligned_cols=95 Identities=17% Similarity=0.187 Sum_probs=50.9
Q ss_pred CEEEEEcccchHHHHHHHHHHh---hh-hhcCCcEEE-EEecCCc---------hhH-HHHHHcCceec--C--C-CcCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVK-VGLRKGS---------RSF-AEARAAGFTEE--N--G-TLGD 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds---~~-~~g~G~~Vi-vg~r~~~---------~s~-~~A~~~G~~~~--d--~-~~~~ 171 (462)
.+|+|+|+|+.|..+++-|.+. +. ..|..++|+ |.+++.. ..+ +..++.|-... + + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999988773 11 122224433 2232110 111 11111221100 0 0 0125
Q ss_pred Hhhhh--ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 012479 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 172 ~~eav--~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
.+|.+ .++|+||=+++++...+++.+. ++.|..|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEE
Confidence 66666 4799999999877666666554 34555443
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.57 E-value=4.9 Score=41.17 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=56.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCC-cCCHhhhhccCCeEEEee
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~~~~eav~~ADvViLav 186 (462)
+| .++.|+|.|.+|...++-++.. |.++++..+.+.+....+++.|.... +.. ...+.+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 57 8999999999999999998888 88776665554444444455776310 000 001112223568988888
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
... ..+++....++++..++..
T Consensus 253 g~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 PVF---HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred Cch---HHHHHHHHHhccCCEEEEE
Confidence 632 2333444556666655444
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.53 E-value=7.6 Score=36.53 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=31.2
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCc
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~ 151 (462)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|+..
T Consensus 3 ~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred cCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 567 89999996 67999999999998 998887777644
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.34 E-value=7.5 Score=39.87 Aligned_cols=126 Identities=21% Similarity=0.205 Sum_probs=67.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcC----ceecCC-CcCCHhhhhcc
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENG-TLGDIYETISG 178 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G----~~~~d~-~~~~~~eav~~ 178 (462)
..++. .||.|+|.|+.|.|.|..+.-+ |+ ++.+-+-...+...++-... |...-. .....-.+-++
T Consensus 16 ~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~ 88 (332)
T KOG1495|consen 16 KEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSAN 88 (332)
T ss_pred ccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCC
Confidence 44555 8999999999999999998877 66 33333322222222222211 211000 01112245678
Q ss_pred CCeEEEeecchhH------------HHHHHHHHhcC---CCCcEEEEec-cchHH-HhhhccccCCCCccEEecccCC
Q 012479 179 SDLVLLLISDAAQ------------ADNYEKIFSCM---KPNSILGLSH-GFLLG-HLQSMGLDFPKNIGVIAVCPKG 239 (462)
Q Consensus 179 ADvViLavpd~a~------------~~vl~eI~~~L---k~gaiL~~a~-G~~i~-~~~~~~i~~p~~v~VV~v~Png 239 (462)
+|+||+..-..+. .++++.|.|.+ .|++++.+++ -+.+- |..-..-.+|++ +||+.=.|-
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~n-RViGsGcnL 165 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKN-RVIGSGCNL 165 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCccc-ceeccCcCc
Confidence 9999998753332 34566666654 6677765444 44332 222112245554 677654443
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.32 E-value=3.7 Score=39.59 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=33.6
Q ss_pred ccccccccCCCCEEEEEcc-c-chHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 101 FNLLPDAFNGINQIGVIGW-G-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 101 f~~~~~~l~gikkIgIIG~-G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++.....++| +++.|.|. | -+|.++++.|.+. |.+|++..+.
T Consensus 8 ~~~~~~~~~~-k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~ 51 (262)
T PRK07831 8 YVPGHGLLAG-KVVLVTAAAGTGIGSATARRALEE------GARVVISDIH 51 (262)
T ss_pred CCCcccccCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3344466788 99999997 6 5999999999998 9988776654
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.23 E-value=2.9 Score=40.12 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=30.7
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
++| |++.|+|. |.+|.++++.|.+. |.+|++..|..
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 578 99999995 79999999999998 99887777653
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.23 E-value=2.7 Score=46.59 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=29.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++ ++|.|||.|..|.+.|..|++. |++|.+..+.
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~ 315 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESL 315 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecC
Confidence 56 8999999999999999999998 9888776543
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.99 E-value=2 Score=46.54 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=30.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r 148 (462)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 56899 9999999999999999999988 887765534
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=85.83 E-value=4.5 Score=40.20 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=57.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhh-hhccCCeEEEee
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~e-av~~ADvViLav 186 (462)
.+| .+|.|.|.|.+|.+.++-++.. |.+|++..+.. ...+.+++.|... ..+..+ .-+..|+++.+.
T Consensus 166 ~~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~vD~vi~~~ 233 (329)
T cd08298 166 KPG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW----AGDSDDLPPEPLDAAIIFA 233 (329)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE----EeccCccCCCcccEEEEcC
Confidence 356 7999999999999999988887 88876665554 4466667777632 111111 223578888876
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEE
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
+.. ..++++...++++..++.
T Consensus 234 ~~~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 234 PVG---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred CcH---HHHHHHHHHhhcCCEEEE
Confidence 543 345666667777665553
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=85.71 E-value=5 Score=40.16 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=62.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH----HcCceecCCCcCCHhhhhc---cCC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~~eav~---~AD 180 (462)
|.| ++|-=|||| |+.++.-|.+. |.+| .|.|-.++..+.|+ +.|+.. +=...+.+|... .-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 788 999999998 56777777777 8776 57777777776666 345542 111345666655 568
Q ss_pred eEEEe-----ecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLa-----vpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+|+.. +|+.. .++..+...+|||-++.++
T Consensus 127 vV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEe
Confidence 88754 44433 3777888999999877655
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=85.71 E-value=3 Score=42.66 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=48.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-HHH--c---Cc--eecCCC-cCCHhhh
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARA--A---GF--TEENGT-LGDIYET 175 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-A~~--~---G~--~~~d~~-~~~~~ea 175 (462)
..+++ ++|.|.|. |.+|..++..|.+. |++|++..|........ ... . .+ ...|-. ..+..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 44677 99999997 99999999999998 99887766653321111 011 1 11 111100 1234567
Q ss_pred hccCCeEEEeecc
Q 012479 176 ISGSDLVLLLISD 188 (462)
Q Consensus 176 v~~ADvViLavpd 188 (462)
++.+|+||-+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8889999988753
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=85.70 E-value=4.8 Score=41.63 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=36.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCc
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (462)
-+| .+|.|+|.|.+|...++-++.. |. +|++. +.++...+.+++.|.
T Consensus 197 ~~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 197 QAG-SSVAIFGLGAVGLAVAEGARAR------GASKIIGV-DINPEKFEKGKEMGI 244 (381)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCCcEEEE-cCChHHHHHHHHcCC
Confidence 346 8999999999999999999888 87 45544 444556788888886
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.68 E-value=5.3 Score=38.86 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=44.1
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH---hhhhc-------
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS------- 177 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~eav~------- 177 (462)
++ ++|.|.|. |-+|.++++.|.+. |.+|++..|..++ .+.....++......+.+. +++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~-l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDK-MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45 89999995 79999999999988 9888776665433 3323233332110012232 23333
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
..|+||.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 5799988764
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.21 E-value=4.7 Score=39.16 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.4
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
++| ++|.|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~ 39 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDE 39 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence 567 89999996 78999999999998 99887776653
|
|
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=85.20 E-value=3.3 Score=43.13 Aligned_cols=70 Identities=14% Similarity=0.003 Sum_probs=46.2
Q ss_pred c-CCCCEEEEEccc-------chHHHHHHHHHHhhhhhcCCcEEEEEec-CC----chhHHH----HHHcCceecCCCcC
Q 012479 108 F-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KG----SRSFAE----ARAAGFTEENGTLG 170 (462)
Q Consensus 108 l-~gikkIgIIG~G-------~mG~AiA~~Lrds~~~~g~G~~Vivg~r-~~----~~s~~~----A~~~G~~~~d~~~~ 170 (462)
+ +| .||+|++.| ++..|++..+..- |.++++... +. ....+. +.+.|.... ...
T Consensus 166 ~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~ 236 (335)
T PRK04523 166 TLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--VSH 236 (335)
T ss_pred ccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 5 78 899776543 6788888887776 888777655 21 122222 344563220 156
Q ss_pred CHhhhhccCCeEEEee
Q 012479 171 DIYETISGSDLVLLLI 186 (462)
Q Consensus 171 ~~~eav~~ADvViLav 186 (462)
+++|++++||+|..-.
T Consensus 237 d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 237 DIDSAYAGADVVYAKS 252 (335)
T ss_pred CHHHHhCCCCEEEece
Confidence 8899999999999754
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=85.13 E-value=4.6 Score=40.62 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=56.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCC-HhhhhccCCeEEEee
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLLI 186 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~-~~eav~~ADvViLav 186 (462)
+| .+|.|.|.|.+|.+.++-++.. |.++++..+. .+..+.+.+.|.... +....+ ..+.-...|+|+-++
T Consensus 169 ~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~ 240 (337)
T cd05283 169 PG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTV 240 (337)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECC
Confidence 56 8999999999999999888888 8877665544 344666777775310 000001 111234679999888
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+... .+.+....++++..++..
T Consensus 241 g~~~---~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 241 SASH---DLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred CCcc---hHHHHHHHhcCCCEEEEE
Confidence 7652 234445556555554443
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=85.12 E-value=4.8 Score=38.65 Aligned_cols=37 Identities=22% Similarity=0.048 Sum_probs=31.1
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
..|+| |+|.|.|. |.+|.++++.|.+. |.+|++..+.
T Consensus 6 ~~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 6 PGHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred cccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 45788 99999995 89999999999988 8888776554
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.09 E-value=2.4 Score=45.33 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~ 151 (462)
.|+| ++|+|=|+||.|.-.|+-|.+. |.+|++..+...
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 3899 9999999999999999999888 888877666544
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=85.08 E-value=1.1 Score=43.89 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=43.4
Q ss_pred EEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---Hhhhh------cc-CCe
Q 012479 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG-SDL 181 (462)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav------~~-ADv 181 (462)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..|+........| ..+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4789996 99999999999998 999888887644321 1222110011222 33455 45 899
Q ss_pred EEEeecc
Q 012479 182 VLLLISD 188 (462)
Q Consensus 182 ViLavpd 188 (462)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988875
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=84.83 E-value=5.4 Score=40.31 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=56.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhh----hh--ccCCe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~e----av--~~ADv 181 (462)
+| .+|.|.|.|.+|.+.++-.+.. |..+++..+..++..+.+++.|+... +....+..+ .. +..|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 46 8999999999999999988887 88544555555566788888886310 100111111 22 24788
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEE
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
|+-++... +.+.+....++++..++
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEE
Confidence 88777642 23444455566655544
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.73 E-value=5.4 Score=38.67 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
.++| +++-|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 3 ~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 3 GLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 3677 99999996 78999999999998 99888776653
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.63 E-value=7.8 Score=37.19 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
.++| ++|-|+|. |-+|.++++.|.+. |.+|++..|+
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4788 99999997 89999999999998 9888776664
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=84.62 E-value=3.2 Score=41.15 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=45.4
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH--HHHHH-cC------ceecCCC-cCCHhhhhc
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-AG------FTEENGT-LGDIYETIS 177 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~--~~A~~-~G------~~~~d~~-~~~~~eav~ 177 (462)
+| ++|.|.| .|-+|..++..|.+. |++|++..|...... ..... .+ +...|-. .....++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 35 8999999 699999999999999 998876666533211 11111 11 1111100 123556788
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
++|+||.+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 8999988764
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=1.8 Score=48.20 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=32.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCch
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~ 152 (462)
+..+| ++|.|.|. |.+|.++++.|.+. |++|++..|+..+
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ek 116 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQR 116 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHH
Confidence 44556 89999995 89999999999998 9998887776443
|
|
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=84.50 E-value=9.5 Score=38.11 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=54.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHH-hhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc----cCCe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL 181 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrd-s~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~----~ADv 181 (462)
.+| .+|.|+|.|.+|.+.++.++. . |..+++..+..++..+.+++.|.... +....+..+.+. +.|+
T Consensus 159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 357 899999999999998887774 5 77655555555566778888886320 100112333332 3467
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
|+-++... ..+.+....++++-.++.
T Consensus 232 vid~~g~~---~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 232 IIDAACHP---SILEEAVTLASPAARIVL 257 (339)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEE
Confidence 77777632 123333445555554443
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=2.7 Score=44.60 Aligned_cols=67 Identities=28% Similarity=0.307 Sum_probs=43.3
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH----HHHHHcCceecCCCcCCH---hhhhccCCeEEEe
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDI---YETISGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~----~~A~~~G~~~~d~~~~~~---~eav~~ADvViLa 185 (462)
||.|||.|..|.+.|+.|.+. |+.|.+.++...... ..-++.|+...-+...+. .+..++.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 689999999999999999999 998877665432212 223445765310011111 1356789998883
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.18 E-value=3.1 Score=45.07 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r 148 (462)
..|+| ++|+|.|+|+.|...|+.|.+. |.+|++..+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 46899 9999999999999999999998 888766333
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.16 E-value=4.4 Score=38.29 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
.++| +++.|.|. |.+|..+++.|.+. |++|++..|..
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~ 43 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNA 43 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 3678 99999997 79999999999998 98887766653
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.11 E-value=4.3 Score=38.74 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=31.3
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCc
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~ 151 (462)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|..+
T Consensus 5 ~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~~ 42 (262)
T PRK13394 5 LNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQD 42 (262)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCChH
Confidence 567 99999997 89999999999998 988877666543
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.04 E-value=4.4 Score=38.35 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=30.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
+++ ++|.|+|. |.+|.++++.|.+. |.+|++..|+.
T Consensus 3 ~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 577 89999995 89999999999998 99987776653
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=83.98 E-value=6.6 Score=39.59 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=56.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----Cceec-CCCcCCHhhh-hccCCe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE-NGTLGDIYET-ISGSDL 181 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~-d~~~~~~~ea-v~~ADv 181 (462)
.+| ++|.-||+|+-..+ ..+... |..-+++.+.++...+.|++. ++... .....+.... -...|+
T Consensus 158 ~~g-~~VLDvGcGsG~la--i~aa~~------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDl 228 (288)
T TIGR00406 158 LKD-KNVIDVGCGSGILS--IAALKL------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADV 228 (288)
T ss_pred CCC-CEEEEeCCChhHHH--HHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceE
Confidence 467 89999999993334 344444 543456777776666555542 32100 0001111111 236799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|+.-........+++++...|+||-.+.++
T Consensus 229 Vvan~~~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 229 IVANILAEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred EEEecCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 987665555667888899999999876554
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=83.90 E-value=7.6 Score=40.30 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=37.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCce
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (462)
.+| .+|.|+|.|.+|...++-++.. |..+++..+.+++..+.|++.|..
T Consensus 192 ~~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa~ 240 (378)
T PLN02827 192 SKG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGVT 240 (378)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCc
Confidence 357 8999999999999999988888 875445555445567788888863
|
|
| >PRK14805 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.86 E-value=3.1 Score=42.74 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=46.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcCceecCCCcCCHhhhhc
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~eav~ 177 (462)
.++| .||++||-+ ++..|++..+..- |.++.+..... ....+ .+++.|.... .+.+ .++++
T Consensus 144 ~l~g-~kva~vGD~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~d-~~a~~ 213 (302)
T PRK14805 144 DVSK-VKLAYVGDGNNVTHSLMYGAAIL------GATMTVICPPGHFPDGQIVAEAQELAAKSGGKLV--LTSD-IEAIE 213 (302)
T ss_pred CcCC-cEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEE--EEcC-HHHHC
Confidence 4788 999999975 6778888888877 88877765432 12222 2344564321 1344 56899
Q ss_pred cCCeEEEee
Q 012479 178 GSDLVLLLI 186 (462)
Q Consensus 178 ~ADvViLav 186 (462)
+||+|...+
T Consensus 214 ~aDvvy~~~ 222 (302)
T PRK14805 214 GHDAIYTDT 222 (302)
T ss_pred CCCEEEeec
Confidence 999999865
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=83.73 E-value=3.8 Score=34.12 Aligned_cols=91 Identities=22% Similarity=0.172 Sum_probs=55.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC----c----eecCCCcCCH---hhhhc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----F----TEENGTLGDI---YETIS 177 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G----~----~~~d~~~~~~---~eav~ 177 (462)
+| .+|--||+|.-..++...-+.. +.+| ++.+.++...+.|++.- . ... ..+. .+...
T Consensus 1 p~-~~vLDlGcG~G~~~~~l~~~~~------~~~v-~gvD~s~~~~~~a~~~~~~~~~~~~i~~~---~~d~~~~~~~~~ 69 (112)
T PF12847_consen 1 PG-GRVLDLGCGTGRLSIALARLFP------GARV-VGVDISPEMLEIARERAAEEGLSDRITFV---QGDAEFDPDFLE 69 (112)
T ss_dssp TT-CEEEEETTTTSHHHHHHHHHHT------TSEE-EEEESSHHHHHHHHHHHHHTTTTTTEEEE---ESCCHGGTTTSS
T ss_pred CC-CEEEEEcCcCCHHHHHHHhcCC------CCEE-EEEeCCHHHHHHHHHHHHhcCCCCCeEEE---ECccccCcccCC
Confidence 46 8899999998444433332224 6674 67777776666665532 1 110 1233 34456
Q ss_pred cCCeEEEee-----cc--hhHHHHHHHHHhcCCCCcEEEE
Q 012479 178 GSDLVLLLI-----SD--AAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 178 ~ADvViLav-----pd--~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
+.|+|++.- -. ....++++.+...|+||-.+.+
T Consensus 70 ~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 70 PFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp CEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 789998866 11 2345678889999999887654
|
... |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=83.51 E-value=6.4 Score=39.08 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=53.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceec-CCCcCCHhh----hhccCCeE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDLV 182 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~e----av~~ADvV 182 (462)
+| .+|.|+|.|.+|.+.++.++.. |.+ +++..+ +++..+.+.+.|.... +....+..+ .-+..|+|
T Consensus 159 ~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 159 PG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEP-NEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECC-CHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEE
Confidence 56 8999999999999999998888 887 544444 3444566666675210 100011110 12458999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+-++... ..+.+....|+++..++..
T Consensus 231 ~~~~~~~---~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 231 IEATGVP---KTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EECCCCh---HHHHHHHHHHhcCCEEEEE
Confidence 9887532 2333444445555444433
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.42 E-value=5.6 Score=38.47 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=51.6
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
.++| |++.|.|.+ -+|.++|+.|.+. |.+|++..|+ .+..+...+. . ..... .-.+|+
T Consensus 4 ~l~~-k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~-~~~~~~~~~~--~------~~~~~-~~~~Dl-- 64 (252)
T PRK06079 4 ILSG-KKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQN-DRMKKSLQKL--V------DEEDL-LVECDV-- 64 (252)
T ss_pred ccCC-CEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCc-hHHHHHHHhh--c------cCcee-EEeCCC--
Confidence 3678 999999985 7999999999998 9998877664 2222222111 1 00000 112343
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++.+.++++++.....+=.+|+..+|+
T Consensus 65 --~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 65 --ASDESIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred --CCHHHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 34455566777766544222356666665
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=83.41 E-value=1.8 Score=43.56 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi 144 (462)
..++| +||+|.|+|+.|...|+-|.+. |.+|+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 67899 9999999999999999999988 88776
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=83.30 E-value=5.2 Score=38.12 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=30.1
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
++| |+|.|.|. |.+|.++|..|.+. |.+|++..|+.
T Consensus 2 ~~~-k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~~ 38 (256)
T PRK09186 2 LKG-KTILITGAGGLIGSALVKAILEA------GGIVIAADIDK 38 (256)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEecCh
Confidence 567 99999995 79999999999998 98887766543
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.20 E-value=8.3 Score=39.54 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=36.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (462)
+| .+|.|+|.|.+|.+.++-++.. |.++++.....+...+.+.+.|.
T Consensus 183 ~g-~~vlI~g~g~vG~~a~~~a~~~------G~~~v~~~~~~~~~~~~~~~~g~ 229 (365)
T cd05279 183 PG-STCAVFGLGGVGLSVIMGCKAA------GASRIIAVDINKDKFEKAKQLGA 229 (365)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHhCC
Confidence 46 8999999999999999988888 88655555444555677777775
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=83.01 E-value=1.8 Score=42.70 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.2
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
+|.|||.|.-|.+.|..|++. |++|++..+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA------GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc------ccccccchhcc
Confidence 699999999999999999999 99998887753
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.00 E-value=4.8 Score=38.55 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=31.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
.|+| |+|.|.|. |.+|.++++.|.+. |.+|++..|.
T Consensus 7 ~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~ 43 (255)
T PRK07523 7 DLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRD 43 (255)
T ss_pred CCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4788 99999995 89999999999988 9988776665
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.91 E-value=4.3 Score=38.92 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++| |++-|.|. |-+|.++++.|.+. |.+|++..|.
T Consensus 7 ~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~ 42 (253)
T PRK05867 7 LHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARH 42 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCC
Confidence 678 99999997 78999999999998 9988777664
|
|
| >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=82.72 E-value=13 Score=37.27 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=56.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhh----h--ccCCe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET----I--SGSDL 181 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~ea----v--~~ADv 181 (462)
+| .+|.|+|.|.+|.+.++-++.. |.++++.....+...+.+++.|.... +....+..+. . ...|+
T Consensus 168 ~g-~~vlI~g~g~vg~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~ 240 (345)
T cd08287 168 PG-STVVVVGDGAVGLCAVLAAKRL------GAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADA 240 (345)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCE
Confidence 56 8999999999999999888888 88655666655556777787775210 1111111121 1 24788
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
++-++... ..+......++++..++.
T Consensus 241 il~~~g~~---~~~~~~~~~l~~~g~~v~ 266 (345)
T cd08287 241 VLECVGTQ---ESMEQAIAIARPGGRVGY 266 (345)
T ss_pred EEECCCCH---HHHHHHHHhhccCCEEEE
Confidence 88776432 234444445555555443
|
This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.63 E-value=4 Score=46.11 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=33.3
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch
Q 012479 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (462)
Q Consensus 106 ~~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~ 152 (462)
..++| ++|.|+| .|-+|.++++.|.+. |.+|++..|+.++
T Consensus 418 ~~l~g-k~vLVTGasggIG~~la~~L~~~------Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAG-KVALVTGAAGGIGKATAKRLAAE------GACVVLADLDEEA 458 (681)
T ss_pred cCCCC-CEEEEecCCCHHHHHHHHHHHHC------cCEEEEEeCCHHH
Confidence 45678 9999999 599999999999998 8888777766443
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.55 E-value=8.1 Score=39.60 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=35.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCc
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (462)
.+| .+|.|+|.|.+|...++-++.. |. +|++..+ .+..++.+++.|.
T Consensus 183 ~~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~Vi~~~~-~~~~~~~~~~~ga 230 (365)
T cd08277 183 EPG-STVAVFGLGAVGLSAIMGAKIA------GASRIIGVDI-NEDKFEKAKEFGA 230 (365)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeC-CHHHHHHHHHcCC
Confidence 356 8999999999999999988888 88 4554444 4455777777776
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=82.52 E-value=2.7 Score=43.35 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=46.1
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH-cCceecCCCcCCHhhhhccCCe
Q 012479 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~~~eav~~ADv 181 (462)
.++| .||++||= +++..|++..+..- |. ++.+.-...- +..... ..+.. +.+.++++++||+
T Consensus 154 ~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~--~p~~~~~~~~~~----~~d~~ea~~~aDv 220 (310)
T PRK13814 154 HWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSL--LPDKVGNDSIKK----FTELKPSLLNSDV 220 (310)
T ss_pred CcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCccc--CcCccccceEEE----EcCHHHHhCCCCE
Confidence 4778 99999997 69999999999887 87 7766544321 111111 12432 5788999999999
Q ss_pred EEE
Q 012479 182 VLL 184 (462)
Q Consensus 182 ViL 184 (462)
|..
T Consensus 221 vy~ 223 (310)
T PRK13814 221 IVT 223 (310)
T ss_pred EEE
Confidence 986
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.50 E-value=7.8 Score=39.88 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=36.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCce
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFT 163 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~ 163 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++. +.+.+..+.+++.|..
T Consensus 185 ~g-~~VlV~G~G~iG~~a~q~Ak~~------G~~~Vi~~-~~~~~~~~~a~~~Ga~ 232 (368)
T TIGR02818 185 EG-DTVAVFGLGGIGLSVIQGARMA------KASRIIAI-DINPAKFELAKKLGAT 232 (368)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEE-cCCHHHHHHHHHhCCC
Confidence 46 8999999999999999988888 87 56554 4445567788888863
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=82.40 E-value=3.7 Score=44.23 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=28.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
+| ++|.|+|+|.-|.+.++-|+ . |.+|++.+++
T Consensus 5 ~~-~~v~v~G~G~sG~a~~~~L~-~------g~~v~v~D~~ 37 (454)
T PRK01368 5 TK-QKIGVFGLGKTGISVYEELQ-N------KYDVIVYDDL 37 (454)
T ss_pred CC-CEEEEEeecHHHHHHHHHHh-C------CCEEEEECCC
Confidence 46 89999999999999999998 6 8888887744
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 462 | ||||
| 1yve_I | 524 | Acetohydroxy Acid Isomeroreductase Complexed With N | 0.0 | ||
| 3fr7_A | 525 | Ketol-Acid Reductoisomerase (Kari) In Complex With | 0.0 | ||
| 1np3_A | 338 | Crystal Structure Of Class I Acetohydroxy Acid Isom | 7e-22 | ||
| 1yrl_A | 491 | Escherichia Coli Ketol-Acid Reductoisomerase Length | 4e-09 | ||
| 3ulk_A | 491 | E. Coli Ketol-Acid Reductoisomerase In Complex With | 4e-09 |
| >pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph, Magnesium And Inhibitor Ipoha (N-Hydroxy-N- Isopropyloxamate) Length = 524 | Back alignment and structure |
|
| >pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+ Length = 525 | Back alignment and structure |
|
| >pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid Isomeroreductase From Pseudomonas Aeruginosa Length = 338 | Back alignment and structure |
|
| >pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase Length = 491 | Back alignment and structure |
|
| >pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph And Mg2+ Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 462 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 0.0 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 3e-13 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 1e-46 | |
| 1yrl_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 2e-42 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 1e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 2e-04 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 536 bits (1383), Expect = 0.0
Identities = 342/391 (87%), Positives = 367/391 (93%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 254
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 255 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 314
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG 431
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVG
Sbjct: 315 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVG 374
Query: 432 ERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
E+VRSTRP DLGPLHPFTAGVY ALMMAQ+
Sbjct: 375 EKVRSTRPENDLGPLHPFTAGVYVALMMAQI 405
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 15/141 (10%), Positives = 41/141 (29%), Gaps = 4/141 (2%)
Query: 299 RSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAV 358
+D+ G ++ + + G + +V ++ + +G+ +
Sbjct: 383 ENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFM 442
Query: 359 YNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP 418
++ S + K Y + + + V + I +++ G
Sbjct: 443 VDNCSTTARLGSRKWAPRFDYILTQ---QAFVTVDKDAPINQDLISNFMSDPVHGAIE-V 498
Query: 419 MGKIDQTRMWKVGERVRSTRP 439
++ T V RP
Sbjct: 499 CAELRPTVDISVPANADFVRP 519
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 Length = 338 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 1e-46
Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 31/257 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
++ +D+V++L D Q Y++ I +K + L +HGF + ++
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVP-----RADL 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PF 288
VI + PK G +VR +V+G GI A++QD G A NVAL ++ +G
Sbjct: 123 DVIMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTG 177
Query: 289 TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGII 346
TT + E +D+FGE+ +L G +V++ F E G ++AY EC+ +I
Sbjct: 178 IIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAY---FECLHELKLI 234
Query: 347 SKIISTQGMLAVYNSFS 363
++ G+ + S S
Sbjct: 235 VDLMYEGGIANMNYSIS 251
|
| >1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} Length = 491 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-42
Identities = 71/248 (28%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF ++ +G K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGF---NIVEVGEQIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
+I V+ V PK G VR Y +G G+ + AVH D G +A W+ A G
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200
Query: 287 PFTFA----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A ++ E +SD+ GE+ IL G + F + E G + A K
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEK---LIQ 255
Query: 343 TGIISKII 350
G + I
Sbjct: 256 FGW--ETI 261
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 1e-08
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
P + GI V + G + A+G +
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 35/286 (12%), Positives = 83/286 (29%), Gaps = 83/286 (29%)
Query: 9 SRPIPKFS-PSPSS-ETLKEALKHLNLASF------SSTAKSLRALKTTTGRGSALSAWM 60
++ K++ L++AL L A + K+ W+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----------------WV 166
Query: 61 ASETALKTPFLLDFETSVFKKDMISLA--DRDEYIVRGGRDLF-----NLLPDAFNGINQ 113
A + L + +F ++L + E ++ + L N + + N
Sbjct: 167 ALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 114 IGVIGWGSQGPA---QAQNLRDSL-----------AEA---KSDIVV---------KVGL 147
I +++ + L A I++ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 148 RKGSRSFAEARAAGFTEE----------NGTLGDI-YETISGSDLVLLLIS-----DAAQ 191
+ + + T + + D+ E ++ + L +I+ A
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 192 ADNYEKIFSCMKPNSILGLSHGFL-----LGHLQSMGLDFPKNIGV 232
DN++ + +C K +I+ S L + + FP + +
Sbjct: 344 WDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHI 387
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 2e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 462 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 100.0 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 100.0 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 100.0 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.97 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.96 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 99.91 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.91 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.87 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.87 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.87 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.83 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.83 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.83 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.82 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.81 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.78 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.78 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.67 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.63 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.61 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.58 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.57 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.56 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.55 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.54 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.54 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.53 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.53 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.52 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.51 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.51 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.5 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.5 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.49 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.48 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.47 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.47 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.45 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.44 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.44 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.43 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.43 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.41 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.41 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.4 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.39 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.39 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.39 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.38 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.38 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.38 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.37 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.36 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.36 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.36 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.36 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.35 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.35 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.35 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.34 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.34 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.33 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.31 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.3 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.29 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.28 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.27 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.26 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.25 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.9 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.25 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.23 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.23 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.22 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.17 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.16 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.16 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.16 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.15 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.14 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.13 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.13 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.13 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.13 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.13 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.12 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.11 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.1 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.09 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.07 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.07 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.07 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.06 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.06 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.04 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.04 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.02 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.02 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.02 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.01 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.0 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.0 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.99 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.98 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.97 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.96 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.96 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.95 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.95 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.92 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.9 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.89 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.89 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.88 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.83 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.83 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.76 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.74 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.72 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.69 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.69 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.64 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.64 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.61 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 98.59 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.57 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.56 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.56 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.55 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.54 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.53 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.52 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.51 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.5 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.5 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.5 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.48 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.44 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.43 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.31 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.3 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.27 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 98.27 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.26 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.24 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.22 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 98.22 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.21 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 98.21 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.19 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.18 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.16 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.16 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.16 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.12 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.12 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.11 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.11 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.1 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.07 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 98.07 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.07 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.06 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.05 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.04 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.03 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.01 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.01 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.01 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.99 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.96 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.95 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.95 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.94 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.94 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.94 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.93 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.93 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.93 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.91 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.91 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.9 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 97.89 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.88 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.88 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.85 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.83 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.82 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.81 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.8 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.79 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.78 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.78 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.76 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.74 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.71 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.7 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.7 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.69 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.67 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.65 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.65 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.65 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.62 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.61 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.61 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.6 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.58 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.58 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.57 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.55 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.54 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.53 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.51 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.51 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.51 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.51 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.48 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.47 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.46 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.44 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.43 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.42 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.42 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.42 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.42 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.4 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.4 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.4 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.39 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.36 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.35 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.34 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.34 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.27 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.26 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.26 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.24 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.23 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.23 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.22 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.21 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.21 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.21 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.2 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.18 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.16 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.14 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.13 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.1 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 97.1 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.07 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.07 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.03 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.98 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.97 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 96.97 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.97 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.97 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.96 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.91 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.9 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.9 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 96.9 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.9 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.89 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.87 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.86 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.84 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.78 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.76 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.75 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.75 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.75 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.74 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.71 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.66 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.65 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.61 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.58 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.57 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.56 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.55 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.54 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.54 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.5 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.49 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 96.46 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.42 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.4 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.36 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.32 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.31 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.31 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.31 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.23 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.22 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.18 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.05 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.05 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.0 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 95.98 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.9 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 95.89 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.88 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 95.84 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 95.82 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.82 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.81 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.72 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.63 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.61 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.6 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.59 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.58 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 95.41 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.39 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.37 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.26 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.25 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.21 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 95.04 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 95.04 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 94.97 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 94.93 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 94.89 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 94.89 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 94.85 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 94.84 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 94.74 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 94.71 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 94.67 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.65 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 94.6 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 94.54 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 94.47 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 94.46 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 94.38 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 94.32 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.28 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.24 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 94.2 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 94.15 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 94.13 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 94.0 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 93.98 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 93.9 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.88 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.86 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 93.86 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 93.85 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 93.79 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.79 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.78 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.77 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.76 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 93.74 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 93.69 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 93.64 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 93.63 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.61 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 93.6 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 93.57 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.55 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 93.53 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 93.53 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 93.51 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.46 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.46 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 93.46 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 93.45 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 93.4 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 93.39 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.33 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 93.29 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 93.25 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 93.25 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.23 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.2 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.15 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.12 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.02 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 92.97 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 92.94 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 92.93 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 92.89 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 92.84 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.78 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 92.7 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 92.68 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 92.62 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 92.6 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 92.54 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 92.52 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 92.52 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 92.26 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 92.23 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 92.22 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 92.21 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 92.2 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 92.1 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 92.1 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 92.08 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.06 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.05 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 92.04 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 91.98 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 91.97 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.96 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.88 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 91.78 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 91.75 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 91.71 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.67 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 91.61 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 91.6 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 91.6 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 91.57 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 91.57 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 91.54 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 91.53 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.52 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 91.49 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 91.47 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 91.42 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.42 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 91.32 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.28 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 91.23 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 91.21 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 91.18 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 91.18 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 91.17 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 91.16 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 91.13 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 91.06 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 91.05 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 91.03 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 91.01 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 90.89 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 90.86 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 90.84 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 90.79 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 90.71 | |
| 2h1q_A | 270 | Hypothetical protein; ZP_00559375.1, structural ge | 90.66 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 90.58 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 90.53 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 90.52 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 90.5 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 90.5 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 90.42 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 90.4 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 90.38 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 90.35 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 90.32 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 90.15 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 90.15 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 90.15 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 90.0 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 89.94 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 89.91 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 89.85 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 89.85 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 89.82 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 89.81 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 89.75 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 89.74 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 89.69 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 89.45 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 89.39 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 89.39 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 89.38 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 89.34 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 89.24 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 89.11 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 88.99 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 88.97 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 88.94 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 88.94 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 88.83 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 88.8 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 88.79 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 88.77 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 88.69 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 88.66 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.64 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 88.32 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 88.32 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 88.31 | |
| 3l5o_A | 270 | Uncharacterized protein from DUF364 family; RARE m | 88.23 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 88.2 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 88.12 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 88.08 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 88.05 | |
| 4ekn_B | 306 | Aspartate carbamoyltransferase; atcase, aspartate | 88.01 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 87.97 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 87.97 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 87.54 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 87.53 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 87.42 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-103 Score=824.64 Aligned_cols=395 Identities=87% Similarity=1.342 Sum_probs=375.6
Q ss_pred CccccccccchhhhhhhhccccccceeecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEe
Q 012479 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (462)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~ 147 (462)
++++++|||++|.+++++|+|++|+|+++|+|.|++++++|+|+|||+|||+|+||+++|++|+++++++|+|++|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~g~~E~v~~~~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~ 90 (525)
T 3fr7_A 11 AMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL 90 (525)
T ss_dssp ----CCCCCSSSCEEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred cccccccccccceeeEeecCCcceEEEeccccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 45779999999999999999999999999999999999999999999999999999999999999988898999999999
Q ss_pred cCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCC
Q 012479 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227 (462)
Q Consensus 148 r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p 227 (462)
+.++++++.|++.|+...+++..++.|++++||+|||++||..+.+++++|+|+|++|++|+++|||+++++++..+.+|
T Consensus 91 r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p 170 (525)
T 3fr7_A 91 RKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFP 170 (525)
T ss_dssp CTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCC
T ss_pred CCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCC
Confidence 98888999999999984233346899999999999999999999999999999999999999999999988875567889
Q ss_pred CCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhH
Q 012479 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307 (462)
Q Consensus 228 ~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqt 307 (462)
++++|||+|||+|++.||++|.+|+++||+|+|++|+++||+++++++++++|++++|++++++|+|++|+++||||+|+
T Consensus 171 ~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqt 250 (525)
T 3fr7_A 171 KNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 250 (525)
T ss_dssp TTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHT
T ss_pred CCCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHHHHHH
Q 012479 308 ILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387 (462)
Q Consensus 308 vL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~~m~e 387 (462)
+|||++|++|+++||++|++|||||+||++++|+++|+|++||+++|+.+|+++||||+++|||++|+..+.|+|++|++
T Consensus 251 vLsG~~pAlieA~~d~lVe~G~~pe~Ay~~~~qel~~~i~~li~e~G~~~m~~~~S~ta~~~~~~~~~~~~~~~~~~m~~ 330 (525)
T 3fr7_A 251 ILLGAVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFNKAYSASFYPCMDILYE 330 (525)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTHHHHHHHHHCHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCcHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999966999999999999999999988899999887778899999999
Q ss_pred HHHhccCChhhhHHHHhcccccccCCCCcccchhhhcChhHHHhHHHHhcCCCCCCCCCCCchhHHHHHhhhhcC
Q 012479 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462 (462)
Q Consensus 388 ~~~~i~~G~far~~~~~~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lR~~~~~~~~~~~~p~t~g~~~~~~~~~~ 462 (462)
+|++||+|+|+|+|+++|++++|+.|+|.|+|++|++|+|||||++||++||++++|||||||+|||||+||||+
T Consensus 331 ~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vr~~r~~~~~~~~~~~~~~~~~~~~~~~~ 405 (525)
T 3fr7_A 331 CYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQI 405 (525)
T ss_dssp HHHHHHHSHHHHHHHHHHHTTSCBTTBCCCCCCCSTTSHHHHHHHHHHHHCCTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcCccchhccccccchhhhcccHHHHHHHHHHhcCCcccCCCCCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-83 Score=660.84 Aligned_cols=347 Identities=26% Similarity=0.395 Sum_probs=318.0
Q ss_pred ccccccchhhhhhhh-----ccccccceeecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEE
Q 012479 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (462)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Viv 145 (462)
.|||||++||+|+.+ ||+++| |.+.++.||| |||+|||||+||++||+||||| |++|+|
T Consensus 2 ~ny~n~l~~~~~~~~~~~c~~m~~~e---------F~~~~~~lkg-K~IaVIGyGsQG~AqAlNLRDS------Gv~V~V 65 (491)
T 3ulk_A 2 ANYFNTLNLRQQLAQLGKCRFMGRDE---------FADGASYLQG-KKVVIVGCGAQGLNQGLNMRDS------GLDISY 65 (491)
T ss_dssp CCTGGGSCHHHHHHHHTCCEECCGGG---------GTTTTGGGTT-SEEEEESCSHHHHHHHHHHHHT------TCEEEE
T ss_pred cchhccccHHHHHHHhccceeccHHH---------hcchhHHHcC-CEEEEeCCChHhHHHHhHHHhc------CCcEEE
Confidence 499999999999987 898888 9999999999 9999999999999999999999 999999
Q ss_pred EecCCc-----hhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhh
Q 012479 146 GLRKGS-----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (462)
Q Consensus 146 g~r~~~-----~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~ 220 (462)
|+|+++ +||++|+++||. +.+++|++++||+|++++||+.|.++|++|.|+||+|++|.|+|||+|++
T Consensus 66 glr~~s~~e~~~S~~~A~~~Gf~-----v~~~~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~faHGFnI~~-- 138 (491)
T 3ulk_A 66 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVE-- 138 (491)
T ss_dssp EECHHHHHTTCHHHHHHHHTTCE-----EEEHHHHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEESSCHHHHT--
T ss_pred EeCCCCcccccchHHHHHHCCCE-----ecCHHHHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEecCcccccc--
Confidence 999544 899999999999 57899999999999999999999999999999999999999999999977
Q ss_pred hccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec--cCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 012479 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (462)
Q Consensus 221 ~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~--qd~tgea~e~a~al~~aiG~~~--viettf~~ 296 (462)
..+.||+|++||+|+||+||+.||++|++| +|+|++|+|| ||+++++++++++|+.++|+++ +++|||++
T Consensus 139 -~~i~pp~dvdVimVAPKgpG~~VR~~y~~G-----~GvP~liAVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~e 212 (491)
T 3ulk_A 139 -VGEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 212 (491)
T ss_dssp -TCCCCCTTSEEEEEEESSCHHHHHHHHHTT-----CCCCEEEEECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHH
T ss_pred -cccccCCCcceEEeCCCCCcHHHHHHHHcC-----CCCceEEEEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHH
Confidence 457999999999999999999999999997 8999999997 8999999999999999999985 99999999
Q ss_pred hccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhcc
Q 012479 297 EYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSA 376 (462)
Q Consensus 297 E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~ 376 (462)
|+++||||||++|||+++++++++||++|++||+|++||+++.++++ +|+|+|+++||.+||++|| +|++||+|..+
T Consensus 213 EtetDLfGEQaVLcGgl~~li~agFetLveaGy~P~~a~~~~~~e~k-lIvdli~egGi~~M~~siS--~TAe~G~~~~~ 289 (491)
T 3ulk_A 213 EVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLS--NPAKLRAYALS 289 (491)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSC--HHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-HHHHHHHhCCHHHHHHhcC--chhhccchhhh
Confidence 99999999999999999999999999999999999999999888777 8999999999999999999 68899998755
Q ss_pred C--chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc-ch-hhhcChhHHHhHHHHhcCCC--CCCCCCCCch
Q 012479 377 S--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP-MG-KIDQTRMWKVGERVRSTRPA--GDLGPLHPFT 450 (462)
Q Consensus 377 ~--~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~-~~-~i~~~~ie~vG~~lR~~~~~--~~~~~~~p~t 450 (462)
. .+.++++|+++|++||+|+|+|+|+.+++ +|.+.|+ ++ +..+|++| .+|+ .+++|..|||
T Consensus 290 ~~~~~~~k~~~~~~l~~I~sG~Fa~~~~~e~~-----~g~~~l~~~R~~~~~h~iE--------k~~~~~~~I~~qe~f~ 356 (491)
T 3ulk_A 290 EQLKEIMAPLFQKHMDDIISGEFSSGMMADWA-----NDDKKLLTWREETGKTAFE--------TAPQYEGKIGEQEYFD 356 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----TTTHHHHHHHHHHHHSHHH--------HCCCCCSCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH-----cCChhHHHHHHHhcCCccc--------cCcccccCCCcccchh
Confidence 3 35678899999999999999999999864 6777765 22 33456655 4665 5678899999
Q ss_pred hHHH-HHhhhhcC
Q 012479 451 AGVY-AALMMAQV 462 (462)
Q Consensus 451 ~g~~-~~~~~~~~ 462 (462)
+||| ||+|+|+|
T Consensus 357 ~Gilmva~v~a~v 369 (491)
T 3ulk_A 357 KGVLMIAMVKAGV 369 (491)
T ss_dssp TCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 9999 99999874
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=387.94 Aligned_cols=310 Identities=28% Similarity=0.490 Sum_probs=273.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+++ ++|+|||+|+||.++|++|+++ |++|+++++..+++++.+.+.|+.. . +.++++++||+||++
T Consensus 12 ~~l~~-~~I~IIG~G~mG~alA~~L~~~------G~~V~~~~~~~~~~~~~a~~~G~~~----~-~~~e~~~~aDvVila 79 (338)
T 1np3_A 12 SIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLKV----A-DVKTAVAAADVVMIL 79 (338)
T ss_dssp HHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCEE----E-CHHHHHHTCSEEEEC
T ss_pred chhcC-CEEEEECchHHHHHHHHHHHHC------cCEEEEEECChHHHHHHHHHCCCEE----c-cHHHHHhcCCEEEEe
Confidence 56788 9999999999999999999999 9888888887666688888899874 3 888999999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
+|+..+.++++ ++.+++++|++|++++|+++ .... +..+.+++|+++||++|++.++++|+.| +|.+++++
T Consensus 80 vp~~~~~~v~~~~i~~~l~~~~ivi~~~gv~~-~~~~--~~~~~~~~vv~~~P~gp~~a~~~l~~~G-----~g~~~ii~ 151 (338)
T 1np3_A 80 TPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQ--VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLIA 151 (338)
T ss_dssp SCHHHHHHHHHHHTGGGCCTTCEEEESCCHHH-HTTS--SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEEE
T ss_pred CCcHHHHHHHHHHHHhhCCCCCEEEEcCCchh-HHHh--hcCCCCcEEEeccCCCCchhHHHHHhcc-----CCCeEEEE
Confidence 99999999999 99999999999999999987 4433 3346778999999999999999999875 79999999
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCc--ccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~~--viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
++++.++++++.++.|++.+|..+ ++++++.+|++.|+|+++++|||++|+++...++.+++.|++++.||++++++.
T Consensus 152 ~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a~~e~~~~~ 231 (338)
T 1np3_A 152 IYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHEL 231 (338)
T ss_dssp EEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTH
T ss_pred ecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHhhhHH
Confidence 999999999999999999999755 889999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccC---chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc-
Q 012479 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS---YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP- 418 (462)
Q Consensus 343 ~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~---~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~- 418 (462)
. ++.+++..+|+..|+...| +.++|+++.... .+..++.|+++++.|++|+|.++|+.+++ .+++.|+
T Consensus 232 ~-~~~~~~~~gg~~~~r~a~s--~p~~~~d~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~-----~~r~~~~~ 303 (338)
T 1np3_A 232 K-LIVDLMYEGGIANMNYSIS--NNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGA-----ANYPSMTA 303 (338)
T ss_dssp H-HHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTHHHHHHHHHHH-----TTSHHHHH
T ss_pred H-HHHHHHHhcCHHHHHHhcC--CHHHHhhhhcCCccccHHHHHHHHHHHHHHhCCHHHHHHHHHHh-----cccHHHHH
Confidence 6 7899989999988866666 678899976332 15678899999999999999999999875 5677776
Q ss_pred ch-hhhcChhHHHhHHHHhcCCCCCC
Q 012479 419 MG-KIDQTRMWKVGERVRSTRPAGDL 443 (462)
Q Consensus 419 ~~-~i~~~~ie~vG~~lR~~~~~~~~ 443 (462)
++ ++++|+||+||++||++|||++.
T Consensus 304 ~~~~~~~~~~~~~g~~~r~~~~~~~~ 329 (338)
T 1np3_A 304 YRRNNAAHPIEQIGEKLRAMMPWIAA 329 (338)
T ss_dssp HHHHHHHSHHHHHHHHHHTTCTTC--
T ss_pred HHHHHhCCcHHHHHHHHHHhCccccc
Confidence 44 55899999999999999999984
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-31 Score=258.00 Aligned_cols=220 Identities=16% Similarity=0.141 Sum_probs=187.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc---EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
+||+|||+|+||.+++++|.++ |+ +|++++|+.++..+.+++.|+.. ..++.++++++|+||+++||
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~------g~~~~~V~v~dr~~~~~~~l~~~~gi~~----~~~~~~~~~~aDvVilav~p 73 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIAN------GYDPNRICVTNRSLDKLDFFKEKCGVHT----TQDNRQGALNADVVVLAVKP 73 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHT------TCCGGGEEEECSSSHHHHHHHHTTCCEE----ESCHHHHHSSCSEEEECSCG
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCCCCeEEEEeCCHHHHHHHHHHcCCEE----eCChHHHHhcCCeEEEEeCH
Confidence 7999999999999999999999 87 78888776655444444468875 56889999999999999999
Q ss_pred hhHHHHHHHHHhc-CCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 189 AAQADNYEKIFSC-MKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 189 ~a~~~vl~eI~~~-Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
+...+++++|.++ ++++++ |++++|+++..++. .++.+.+|+++|||+|... |+|++. +++.
T Consensus 74 ~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~---~l~~~~~vvr~mPn~p~~v------------~~g~~~-l~~~ 137 (280)
T 3tri_A 74 HQIKMVCEELKDILSETKILVISLAVGVTTPLIEK---WLGKASRIVRAMPNTPSSV------------RAGATG-LFAN 137 (280)
T ss_dssp GGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHH---HHTCCSSEEEEECCGGGGG------------TCEEEE-EECC
T ss_pred HHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHH---HcCCCCeEEEEecCChHHh------------cCccEE-EEeC
Confidence 9999999999998 888865 67889998877765 5566678999999999887 478887 5668
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
++.++++++.++.+++++|...++ ..+++++..++|+|++|+ ++|++.|.+++.|++|++|++++.|++
T Consensus 138 ~~~~~~~~~~v~~l~~~iG~~~~v-------~~E~~~d~~talsgsgpa~~~~~~eal~~a~v~~Gl~~~~a~~l~~~t~ 210 (280)
T 3tri_A 138 ETVDKDQKNLAESIMRAVGLVIWV-------SSEDQIEKIAALSGSGPAYIFLIMEALQEAAEQLGLTKETAELLTEQTV 210 (280)
T ss_dssp TTSCHHHHHHHHHHHGGGEEEEEC-------SSHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEE-------CCHHHhhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 889999999999999999963111 123468888999999998 679999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 343 TGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
.| +++|+.++|. ..++|+|+.+
T Consensus 211 ~G-~a~~~~~~~~~p~~l~~~v~sp 234 (280)
T 3tri_A 211 LG-AARMALETEQSVVQLRQFVTSP 234 (280)
T ss_dssp HH-HHHHHHTCSSCHHHHHHHHCCT
T ss_pred HH-HHHHHHhcCCCHHHHHHhccCC
Confidence 99 9999999996 8999999965
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=235.87 Aligned_cols=219 Identities=19% Similarity=0.279 Sum_probs=172.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
+||+|||+|+||.+++++|.++ |+ +|++++|+.++..+.+++.|+.. ..++.|+++++|+||+++|
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~------g~~~~~~V~~~~r~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVilav~ 72 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK------NIVSSNQIICSDLNTANLKNASEKYGLTT----TTDNNEVAKNADILILSIK 72 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TSSCGGGEEEECSCHHHHHHHHHHHCCEE----CSCHHHHHHHCSEEEECSC
T ss_pred CeEEEECccHHHHHHHHHHHhC------CCCCCCeEEEEeCCHHHHHHHHHHhCCEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999999 87 88877766444444444568875 5788999999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
|+...++++++.++++++++ |++++|+++..+.+ .++.+.+++++||+.|... ++|... +++.
T Consensus 73 ~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~------------~~g~~~-~~~~ 136 (247)
T 3gt0_A 73 PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTEN---AFNKKVKVVRVMPNTPALV------------GEGMSA-LCPN 136 (247)
T ss_dssp TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHH---HHCSCCEEEEEECCGGGGG------------TCEEEE-EEEC
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHH---HhCCCCcEEEEeCChHHHH------------cCceEE-EEeC
Confidence 99999999999999999986 45889998766654 4456678999999999876 367766 6667
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
...+.++++.++.+++.+|.. +.. .++.++..+.++|++|+ ++|++.+.+++.|+++++|++.+.+++
T Consensus 137 ~~~~~~~~~~~~~l~~~~G~~--~~~------~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~ 208 (247)
T 3gt0_A 137 EMVTEKDLEDVLNIFNSFGQT--EIV------SEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFAAQAV 208 (247)
T ss_dssp TTCCHHHHHHHHHHHGGGEEE--EEC------CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCE--EEe------CHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 788999999999999999963 222 23467777899999997 789999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 343 TGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
.| +++|+.++|. ..|+|+||.+
T Consensus 209 ~g-s~~~~~~~~~~p~~l~~~v~sp 232 (247)
T 3gt0_A 209 LG-SAKMVLETGIHPGELKDMVCSP 232 (247)
T ss_dssp HH-HHHHHHHSCC------------
T ss_pred HH-HHHHHHHcCCCHHHHHHhcCCC
Confidence 99 8999999997 8999999964
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.7e-26 Score=235.24 Aligned_cols=130 Identities=18% Similarity=0.327 Sum_probs=114.4
Q ss_pred chhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhH
Q 012479 302 IFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPC 381 (462)
Q Consensus 302 lfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~ 381 (462)
-|+....++.++.++++++||++|++||+||.||++|+|+++ ||+++|+++|+.+|+++|| ||||||+|..+ ..+
T Consensus 354 ~f~~Gilmva~v~a~ve~~FEtlveaGy~pE~AYfE~LHElk-LIvdli~e~gl~~M~~sIS--dTAEYG~yl~~--~~~ 428 (491)
T 3ulk_A 354 YFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLFS--YAC 428 (491)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHTTGGGHH-HHHHHHHHHHHHHHHHHSC--HHHHHHHHHHH--HHH
T ss_pred chhhhhHHHHHHHHHHhhhHHHHHHcCCcHHHHHHHHHhHHH-HHHHHHHHhhHHHHHhHhh--hHhhhcCEEec--HHH
Confidence 354443348899999999999999999999999999999999 9999999999999999999 79999999642 356
Q ss_pred HHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc-c-hhhhcChhHHHhHHHHhcCCCCC
Q 012479 382 MEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP-M-GKIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 382 ~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~-~-~~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
|..||+++++||+|.|+|++ .|++ .|.|.|+ + +++++|+||+||++||++|||+|
T Consensus 429 k~~mk~~l~~Iq~g~fak~~-~e~~-----~g~~~l~~~~~~~~~H~IE~VG~~LR~~M~wmk 485 (491)
T 3ulk_A 429 VPLLKPFMAELQPGDLGKAI-PEGA-----VDNGQLRDVNEAIRSHAIEQVGKKLRGYMTDMK 485 (491)
T ss_dssp HHHTHHHHHTCCTTSSSSCC-CCCC-----CCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCChHhhhh-hhcc-----CCCHHHHHHHHHHhCCChhHHHHHHHHhhHHHH
Confidence 77999999999999999995 5654 5778777 4 47799999999999999999997
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=207.57 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=173.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC----cEEEEEecCCc-hhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+||+|||+|+||.++|.+|.++ | ++|++++|..+ ...+...+.|+.. ..++.++++++|+||+++
T Consensus 23 mkI~iIG~G~mG~ala~~L~~~------G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~----~~~~~e~~~~aDvVilav 92 (322)
T 2izz_A 23 MSVGFIGAGQLAFALAKGFTAA------GVLAAHKIMASSPDMDLATVSALRKMGVKL----TPHNKETVQHSDVLFLAV 92 (322)
T ss_dssp CCEEEESCSHHHHHHHHHHHHT------TSSCGGGEEEECSCTTSHHHHHHHHHTCEE----ESCHHHHHHHCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCCcceEEEECCCccHHHHHHHHHcCCEE----eCChHHHhccCCEEEEEe
Confidence 7899999999999999999998 8 67887776643 2455556678875 467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe-ccchHHHhhhccccCC---CCccEEecccCCCchhhHHhhhcCccccCCCceEE
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFP---KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a-~G~~i~~~~~~~i~~p---~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~al 262 (462)
||++..+++++|.+.++++++|+++ .|+.+..+.+ .++ .+.+|++.||+.|... ++|...
T Consensus 93 ~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~---~l~~~~~~~~vv~~~p~~p~~~------------~~g~~v- 156 (322)
T 2izz_A 93 KPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEK---KLSAFRPAPRVIRCMTNTPVVV------------REGATV- 156 (322)
T ss_dssp CGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHH---HHHTTSSCCEEEEEECCGGGGG------------TCEEEE-
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHH---HHhhcCCCCeEEEEeCCcHHHH------------cCCeEE-
Confidence 9999999999999999999987654 6887654432 111 2458999999998766 256644
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHH
Q 012479 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNT 338 (462)
Q Consensus 263 iav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~ 338 (462)
++..++.+.++.+.+..+++.+|.. +. ..+|+++..+.++|++|+ +++++.+.+++.|++++.++.++
T Consensus 157 ~~~g~~~~~~~~~~v~~ll~~~G~~--~~------~~e~~~~~~~a~~g~gpa~~~~~~eala~a~~~~Gl~~~~a~~l~ 228 (322)
T 2izz_A 157 YATGTHAQVEDGRLMEQLLSSVGFC--TE------VEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLG 228 (322)
T ss_dssp EEECTTCCHHHHHHHHHHHHTTEEE--EE------CCGGGHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHhCCCE--EE------eCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5556777889999999999999953 11 124577888899998887 68999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHHhcCC
Q 012479 339 VECITGIISKIISTQGM--LAVYNSFSG 364 (462)
Q Consensus 339 ~e~i~Gli~~li~e~G~--~~m~~~vs~ 364 (462)
.+++.| .++++.+.|. ..+++.++.
T Consensus 229 ~~~~~g-~~~~~~~~~~~p~~l~~~v~s 255 (322)
T 2izz_A 229 AQALLG-AAKMLLHSEQHPGQLKDNVSS 255 (322)
T ss_dssp HHHHHH-HHHHHHHCSSCHHHHHHHHCC
T ss_pred HHHHHH-HHHHHHhcCCCHHHHHHhCCC
Confidence 999998 7788877764 668888864
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-21 Score=185.69 Aligned_cols=210 Identities=13% Similarity=0.202 Sum_probs=163.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC----cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
+||+|||+|+||.+++.+|.++ | ++|.+++|+.++ .|+.. ..+..++++++|+||+++|
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~------g~~~~~~v~~~~~~~~~-------~g~~~----~~~~~~~~~~~D~vi~~v~ 67 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANA------NIIKKENLFYYGPSKKN-------TTLNY----MSSNEELARHCDIIVCAVK 67 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH------TSSCGGGEEEECSSCCS-------SSSEE----CSCHHHHHHHCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCCCCCeEEEEeCCccc-------CceEE----eCCHHHHHhcCCEEEEEeC
Confidence 7899999999999999999998 8 578777765443 57764 5678899999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeecc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q 267 (462)
++...++++++.++++++.+|+++.|+....+.+ .++.+.++++++|+.|... ++| ..+++...
T Consensus 68 ~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~------------~~g-~~~~~~~~ 131 (262)
T 2rcy_A 68 PDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE---MVGSENKIVWVMPNTPCLV------------GEG-SFIYCSNK 131 (262)
T ss_dssp TTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH---HHCTTSEEEEEECCGGGGG------------TCE-EEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH---HhCCCCcEEEECCChHHHH------------cCC-eEEEEeCC
Confidence 9999999999999885555678899998765554 3455557889999888765 367 55567677
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012479 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (462)
Q Consensus 268 d~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i~ 343 (462)
+.+.+..+.+..+++.+|. ++.. ..+.++..++++++.|+ +++++.+.+++.|++++.++....+++.
T Consensus 132 ~~~~~~~~~~~~ll~~~G~--~~~~------~~~~~~~~~a~~~~~~~~~~~~~~al~~~~~~~Gl~~~~~~~~~~~~~~ 203 (262)
T 2rcy_A 132 NVNSTDKKYVNDIFNSCGI--IHEI------KEKDMDIATAISGCGPAYVYLFIESLIDAGVKNGLSRELSKNLVLQTIK 203 (262)
T ss_dssp TCCHHHHHHHHHHHHTSEE--EEEC------CGGGHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC--EEEe------CHHHccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7788999999999999994 3322 22357777888887775 7888888899999999999999999888
Q ss_pred HHHHHHHHHhcH--HHHHHhcC
Q 012479 344 GIISKIISTQGM--LAVYNSFS 363 (462)
Q Consensus 344 Gli~~li~e~G~--~~m~~~vs 363 (462)
| +.++..+.+. ..++|.++
T Consensus 204 ~-~~~~~~~~~~~~~~l~d~~~ 224 (262)
T 2rcy_A 204 G-SVEMVKKSDQPVQQLKDNIV 224 (262)
T ss_dssp H-HHHHHHHCSSCHHHHHHHHC
T ss_pred H-HHHHHHhcCCCHHHHHHhcC
Confidence 7 6666665443 44455554
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=184.64 Aligned_cols=215 Identities=13% Similarity=0.179 Sum_probs=168.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|||+|||+|+||.++|.+|.+. | ++|.+++|+.++..+.+...|+.. ..+..+++ ++|+||+++|+..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~r~~~~~~~~~~~~g~~~----~~~~~~~~-~~D~vi~~v~~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATLPELH-SDDVLILAVKPQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSCCCCC-TTSEEEECSCHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC------CCCeEEEECCCHHHHHHHHHhcCCEE----eCCHHHHh-cCCEEEEEeCchh
Confidence 5899999999999999999998 8 888777665444333344458764 45677888 9999999999888
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-ccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCC
Q 012479 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a-~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~ 269 (462)
..++++++.+ + +++|++. +|+....+.+ .++.+.++++.+|+.|... +.|... +.+..+.
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~---~~~~~~~~v~~~~~~~~~~------------~~g~~~-i~~~~~~ 130 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI------------GLGVSG-MYAEAEV 130 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG------------TCEEEE-EECCTTS
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCHHHHHH---HcCCCCcEEEEcCCHHHHH------------cCceEE-EEcCCCC
Confidence 8888887766 5 8877766 7887655554 4455678999999988765 357776 4556667
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 012479 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGI 345 (462)
Q Consensus 270 tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i~Gl 345 (462)
+.+..+.+..+++.+|.. + .. . +.|.++..++++|+.|+ +++++.|.+++.|++++.++.++.+++.|
T Consensus 131 ~~~~~~~~~~l~~~~g~~-~-~~---~--~~~~~~~~~al~g~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~~~~~~~- 202 (263)
T 1yqg_A 131 SETDRRIADRIMKSVGLT-V-WL---D--DEEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKG- 202 (263)
T ss_dssp CHHHHHHHHHHHHTTEEE-E-EC---S--STTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhCCCE-E-Ee---C--ChhhccHHHHHHccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-
Confidence 889999999999999953 1 22 1 13478888999888886 67788889999999999999999999998
Q ss_pred HHHHHHHhc--HHHHHHhcCC
Q 012479 346 ISKIISTQG--MLAVYNSFSG 364 (462)
Q Consensus 346 i~~li~e~G--~~~m~~~vs~ 364 (462)
..+++.++| ...+++.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~ 223 (263)
T 1yqg_A 203 AVALAEQTGEDFEKLQKNVTS 223 (263)
T ss_dssp HHHHHHHHCCCHHHHHHHTCC
T ss_pred HHHHHHhcCCCHHHHHHhcCC
Confidence 788999888 6678888764
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-21 Score=183.11 Aligned_cols=215 Identities=16% Similarity=0.152 Sum_probs=165.1
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
++||+|||+|+||.+++.+|.+. |.+|.+++++.++..+.+++.|+.. ..+.+++++++|+||+++|+..
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~------g~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~D~Vi~~v~~~~ 72 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQL 72 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGG
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHHcCCEe----eCCHHHHHhcCCEEEEEeCcHh
Confidence 47999999999999999999988 8887776665444334444457764 5688899999999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEe-ccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCC
Q 012479 191 QADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a-~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~ 269 (462)
+.+++.++ ++|++|+.. .|++...+.+ .++.+.++++.+|+.|... ++|... +++....
T Consensus 73 ~~~v~~~l----~~~~~vv~~~~~~~~~~l~~---~~~~~~~~v~~~p~~~~~~------------~~g~~~-i~~~~~~ 132 (259)
T 2ahr_A 73 FETVLKPL----HFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI------------LQSSTA-LTGNALV 132 (259)
T ss_dssp HHHHHTTS----CCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG------------TCEEEE-EEECTTC
T ss_pred HHHHHHHh----ccCCEEEEeCCCCCHHHHHH---hcCCCCCEEEEcCCchHHH------------cCceEE-EEcCCCC
Confidence 87777654 477776655 6787665544 3344568999999988765 357555 5566667
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 012479 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGI 345 (462)
Q Consensus 270 tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i~Gl 345 (462)
+.+..+.++.+++.+|. ++... + +.++..+.|+|++|+ +++++.|.+++.|++++.++....+++.|
T Consensus 133 ~~~~~~~~~~ll~~~G~--~~~~~---~---~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~~~~~~~- 203 (259)
T 2ahr_A 133 SQELQARVRDLTDSFGS--TFDIS---E---KDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLA- 203 (259)
T ss_dssp CHHHHHHHHHHHHTTEE--EEECC---G---GGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhCCC--EEEec---H---HHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-
Confidence 88999999999999993 33332 2 356777888887775 78999999999999999999999999998
Q ss_pred HHHHHHHhc--HHHHHHhcCC
Q 012479 346 ISKIISTQG--MLAVYNSFSG 364 (462)
Q Consensus 346 i~~li~e~G--~~~m~~~vs~ 364 (462)
..+++.+.| -..+++.++.
T Consensus 204 ~~~~~~~~~~~p~~l~~~~~~ 224 (259)
T 2ahr_A 204 SASNLKTSSQSPHDFIDAICS 224 (259)
T ss_dssp HHHHHHHSSSCHHHHHHHHCC
T ss_pred HHHHHHhcCCCHHHHHHhCCC
Confidence 788888888 4666677753
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=188.23 Aligned_cols=209 Identities=12% Similarity=0.019 Sum_probs=155.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCceecCCCcCCHhh-hhccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~e-av~~ADvViLavpd 188 (462)
+||+|||+|+||.++|++|+++ |+ +|+++++ +....+.+.+.|+. +....++++ ++++||+||+++|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~------G~~~~V~~~dr-~~~~~~~a~~~G~~--~~~~~~~~~~~~~~aDvVilavp~ 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDI-NPESISKAVDLGII--DEGTTSIAKVEDFSPDFVMLSSPV 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECS-CHHHHHHHHHTTSC--SEEESCTTGGGGGCCSEEEECSCG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCCCEEEEEEC-CHHHHHHHHHCCCc--chhcCCHHHHhhccCCEEEEeCCH
Confidence 8999999999999999999999 88 7766554 45567788888884 112467788 89999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
....++++++.++++++++|+++++++ +..+.+ .+|. +||..||+..... ..+...+..++.|.++++++
T Consensus 105 ~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~---~l~~--~~v~~hPm~G~e~--sG~~~A~~~Lf~g~~~il~~ 177 (314)
T 3ggo_A 105 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEK--SGVEYSLDNLYEGKKVILTP 177 (314)
T ss_dssp GGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEECCCCCC--CSGGGCCTTTTTTCEEEECC
T ss_pred HHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHH---hcCC--CEEecCcccCCcc--cchhhhhhhhhcCCEEEEEe
Confidence 999999999999999999999998875 233332 2333 8999999753211 00111122233578888999
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIV-ESLFRRFTENGMNEDLAYKNTVECIT 343 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pali-ea~~d~~v~~G~~~e~A~~~~~e~i~ 343 (462)
++..+.++++.++.+++.+|. .++.++.+++ +..+.+.+.+|.++ -++.+.+.+.+.+++++..++.....
T Consensus 178 ~~~~~~~~~~~v~~l~~~~G~-~v~~~~~~~h------D~~~a~~s~lph~~a~~l~~~~~~~~~~~~~~~~~a~~~fr 249 (314)
T 3ggo_A 178 TKKTDKKRLKLVKRVWEDVGG-VVEYMSPELH------DYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGGGFK 249 (314)
T ss_dssp CTTSCHHHHHHHHHHHHHTTC-EEEECCHHHH------HHHHHHHTHHHHHHHHHHHHHHHHHCCSSCCGGGCCTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHH------HHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhhccccHH
Confidence 888899999999999999996 4555543333 35577888999865 66677777888777776665555444
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-19 Score=173.59 Aligned_cols=213 Identities=14% Similarity=0.089 Sum_probs=153.3
Q ss_pred CCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
|+||+|||+ |+||.++|.+|.+. |++|++++|. .+..+.+.+.|+. ..+..++++++|+||+++|+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~------g~~V~~~~r~-~~~~~~~~~~g~~-----~~~~~~~~~~aDvVi~av~~~ 78 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS------AHHLAAIEIA-PEGRDRLQGMGIP-----LTDGDGWIDEADVVVLALPDN 78 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS------SSEEEEECCS-HHHHHHHHHTTCC-----CCCSSGGGGTCSEEEECSCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHhcCCC-----cCCHHHHhcCCCEEEEcCCch
Confidence 379999999 99999999999998 9988776654 4445555557755 346778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEe-ccchHHHhhhccccCCCCccEEecccCCCchhh----HHhhhcCccccCCC------
Q 012479 190 AQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV----RRLYVQGKEINGAG------ 258 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a-~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~v----r~lf~~G~~~~G~G------ 258 (462)
...++++++.++++++++|++. .|..+..+.+ . .++.+|++.||+.|+.-. ...+ +|
T Consensus 79 ~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~---~-~~~~~~v~~~P~~~~~~~~~~~~~~~--------~g~l~~~~ 146 (286)
T 3c24_A 79 IIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP---E-RADITYFIGHPCHPPLFNDETDPAAR--------TDYHGGIA 146 (286)
T ss_dssp HHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC---C-CTTSEEEEEEECCSCSSCCCCSHHHH--------TCSSSSSS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh---h-hCCCeEEecCCCCccccccccchhhc--------cCcccccc
Confidence 9999999999999999987754 4454544432 2 346789999999887610 0112 45
Q ss_pred -ceEEEeeccCCCHHHHHHHHHHHHHhCCC--cccccchhhhccccchh-hhH--hHHhHHHHHHHHHHHHHHHcCCCHH
Q 012479 259 -INSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFG-ERG--ILLGAVHGIVESLFRRFTENGMNED 332 (462)
Q Consensus 259 -v~aliav~qd~tgea~e~a~al~~aiG~~--~viettf~~E~~~dlfg-eqt--vL~G~~paliea~~d~~v~~G~~~e 332 (462)
.+.+++.. ..+++..+.+..+++.+|.+ +++..+ +...|.++ ... ..++.+-+++|++.+.+++.|++++
T Consensus 147 ~~~~i~~~~-~~~~~~~~~v~~l~~~~G~~~~~~~~v~---~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~ 222 (286)
T 3c24_A 147 KQAIVCALM-QGPEEHYAIGADICETMWSPVTRTHRVT---TEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQ 222 (286)
T ss_dssp CEEEEEEEE-ESCTHHHHHHHHHHHHHTCSEEEEEECC---HHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred cceeeeecc-CCCHHHHHHHHHHHHHhcCCcceEEEeC---hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 35543333 36788999999999999973 344442 33444442 211 1233344588999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012479 333 LAYKNTVECITGIISKIIST 352 (462)
Q Consensus 333 ~A~~~~~e~i~Gli~~li~e 352 (462)
+++.++.+++.| +++++.+
T Consensus 223 ~~~~~~~~~~~~-~~~~~~~ 241 (286)
T 3c24_A 223 AALDFMIGHLNV-EIAMWFG 241 (286)
T ss_dssp HHHHHHHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHHHH-HHHHHHh
Confidence 999999999887 5655533
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=182.42 Aligned_cols=222 Identities=13% Similarity=0.069 Sum_probs=161.8
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEeec
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLIS 187 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-~ADvViLavp 187 (462)
|+||+|||+|+||.++|++|++. |+ +|++.++ +.+..+.+.+.|+.. ....+++++++ ++|+||+++|
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~------g~~~~V~~~d~-~~~~~~~~~~~g~~~--~~~~~~~~~~~~~aDvVilavp 71 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDI-NPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSP 71 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECS-CHHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSC
T ss_pred CcEEEEEecCHHHHHHHHHHHhc------CCCcEEEEEeC-CHHHHHHHHHCCCcc--cccCCHHHHhcCCCCEEEEcCC
Confidence 47999999999999999999998 87 7766554 445566677788741 11357788999 9999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCC------CchhhHHhhhcCccccCCC
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAG 258 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Png------pg~~vr~lf~~G~~~~G~G 258 (462)
+....++++++.++++++++|+++++.+. ..+.+ .+++ .++..||.. |++...++ +.|
T Consensus 72 ~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~---~l~~--~~v~~~p~~~~~~~gp~~a~~~l--------~~g 138 (281)
T 2g5c_A 72 VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEKSGVEYSLDNL--------YEG 138 (281)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEEECCCSCCSGGGCCSST--------TTT
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHH---hccc--cceeeccccCCccCChhhhhhHH--------hCC
Confidence 99999999999999999999998887643 22322 2233 266666643 33332222 357
Q ss_pred ceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHH-HHHHHHHHHHcCCCHHHHHHH
Q 012479 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGI-VESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 259 v~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pal-iea~~d~~v~~G~~~e~A~~~ 337 (462)
.+++++++...+.++.+.+..+++.+|.. ++.++.. ..++.+.++|.+|.+ .-++.+.+.+.|++++.++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~v~~l~~~~g~~-~~~~~~~------~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 211 (281)
T 2g5c_A 139 KKVILTPTKKTDKKRLKLVKRVWEDVGGV-VEYMSPE------LHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKY 211 (281)
T ss_dssp CEEEECCCSSSCHHHHHHHHHHHHHTTCE-EEECCHH------HHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGC
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHcCCE-EEEcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhh
Confidence 88889988888899999999999999973 3333211 234668899999986 477888888889999999998
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcC
Q 012479 338 TVECITGIISKIISTQGMLAVYNSFS 363 (462)
Q Consensus 338 ~~e~i~Gli~~li~e~G~~~m~~~vs 363 (462)
+.+.+.+ ++++.. .-...++|.++
T Consensus 212 ~~~~~~~-~~r~~~-~~p~~~~~~~~ 235 (281)
T 2g5c_A 212 PGGGFKD-FTRIAK-SDPIMWRDIFL 235 (281)
T ss_dssp CTTTGGG-C---CC-SCHHHHHHHHH
T ss_pred ccccHHH-HhHHhc-CCHHHHHHHHH
Confidence 8888876 566553 33455555554
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-20 Score=178.27 Aligned_cols=227 Identities=12% Similarity=0.076 Sum_probs=163.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
++||+|||+|+||.++|.+|.+. |.|++|++.++ +....+.+.+.|... ....+++++++++|+||+++|+..
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~~d~-~~~~~~~~~~~g~~~--~~~~~~~~~~~~aDvVilavp~~~ 78 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD----HPHYKIVGYNR-SDRSRDIALERGIVD--EATADFKVFAALADVIILAVPIKK 78 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH----CTTSEEEEECS-SHHHHHHHHHTTSCS--EEESCTTTTGGGCSEEEECSCHHH
T ss_pred cceEEEEeeCHHHHHHHHHHHhC----CCCcEEEEEcC-CHHHHHHHHHcCCcc--cccCCHHHhhcCCCEEEEcCCHHH
Confidence 38999999999999999999987 22357765554 444556666677631 114577888999999999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEeccchH---HHhhhccccCCC-CccEEecccC------CCchhhHHhhhcCccccCCCc
Q 012479 191 QADNYEKIFSC-MKPNSILGLSHGFLL---GHLQSMGLDFPK-NIGVIAVCPK------GMGPSVRRLYVQGKEINGAGI 259 (462)
Q Consensus 191 ~~~vl~eI~~~-Lk~gaiL~~a~G~~i---~~~~~~~i~~p~-~v~VV~v~Pn------gpg~~vr~lf~~G~~~~G~Gv 259 (462)
+.++++++.++ ++++++|+++++.+. ..+.+ .+++ .++++..||. +|+....++| +|.
T Consensus 79 ~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~---~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~--------~g~ 147 (290)
T 3b1f_A 79 TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEY---YLKDKPVQFVGSHPMAGSHKSGAVAANVNLF--------ENA 147 (290)
T ss_dssp HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHH---HHTTSSCEEEEEEEC-----CCTTSCCTTTT--------TTS
T ss_pred HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHH---hccccCCEEEEeCCcCCCCcchHHHhhHHHh--------CCC
Confidence 99999999999 999999988887654 33333 3343 6788888998 6666544444 468
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 012479 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTV 339 (462)
Q Consensus 260 ~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~ 339 (462)
+++++++...+.++.+.+..+++.+|.. ++.++.+++ |.. .+.++++.|.+.-++.+.+.+.|++++.++.++.
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~l~~~~G~~-~~~~~~~~~---d~~--~a~~s~~~~~~a~~~~~~~~~~g~~~~~~~~la~ 221 (290)
T 3b1f_A 148 YYIFSPSCLTKPNTIPALQDLLSGLHAR-YVEIDAAEH---DCV--TSQISHFPHIIASSLMKQAGDFSESHEMTKHFAA 221 (290)
T ss_dssp EEEEEECTTCCTTHHHHHHHHTGGGCCE-EEECCHHHH---HHH--HHHHTHHHHHHHHHHHHHHHHHHHHCTHHHHHCC
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCE-EEEcCHHHH---HHH--HHHHhhHHHHHHHHHHHHHHhcccchhhHHhhcc
Confidence 8888888878889999999999999973 433332222 211 2556777776655666666667888889999999
Q ss_pred HHHHHHHHHHHHHhcHHHHHHhcC
Q 012479 340 ECITGIISKIISTQGMLAVYNSFS 363 (462)
Q Consensus 340 e~i~Gli~~li~e~G~~~m~~~vs 363 (462)
+++.+ ++++. ..--..++|.++
T Consensus 222 ~~~~~-~~rla-~~~p~~~~~~~~ 243 (290)
T 3b1f_A 222 GGFRD-MTRIA-ESEPGMWTSILL 243 (290)
T ss_dssp HHHHH-TTGGG-GSCHHHHHHHHH
T ss_pred ccHHh-hhhhh-cCCHHHHHHHHH
Confidence 99987 56555 333344466654
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=180.60 Aligned_cols=204 Identities=12% Similarity=0.076 Sum_probs=148.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc----CCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG----SDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~----ADvViLavp 187 (462)
+||+|||+|+||.++|++|+++ |++|+++++ +....+.+.+.|+.. ..++++++++ +|+||+++|
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr-~~~~~~~a~~~G~~~----~~~~~e~~~~a~~~aDlVilavP 77 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAA------NHSVFGYNR-SRSGAKSAVDEGFDV----SADLEATLQRAAAEDALIVLAVP 77 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECS-CHHHHHHHHHTTCCE----ESCHHHHHHHHHHTTCEEEECSC
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCee----eCCHHHHHHhcccCCCEEEEeCC
Confidence 7899999999999999999999 988876654 455677888889864 4677777764 799999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
+....++++++.++ ++|++|+++++++.. .+.. .++ +++||..||+..... ..+..+...+++|.+++++
T Consensus 78 ~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~---~~~-~~~~v~~HPmaG~e~--sG~~aa~~~Lf~g~~~ilt 150 (341)
T 3ktd_A 78 MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKA---RNM-QHRYVGSHPMAGTAN--SGWSASMDGLFKRAVWVVT 150 (341)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHH---TTC-GGGEECEEECCSCC---CCGGGCCSSTTTTCEEEEC
T ss_pred HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHH---hCC-CCcEecCCccccccc--cchhhhhhHHhcCCeEEEE
Confidence 99989999999886 899999999998643 2332 233 578999999742210 1222233345568899999
Q ss_pred eccCCCHH--------HHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHH-HHHHHHHcCCCHHHHH
Q 012479 265 VHQDVDGR--------ATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVES-LFRRFTENGMNEDLAY 335 (462)
Q Consensus 265 v~qd~tge--------a~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea-~~d~~v~~G~~~e~A~ 335 (462)
+..+.+.+ +++.++.+++.+|+ +++..+.++|+ ..+++++.+|.++-. +.+.+.+ .++.+.
T Consensus 151 p~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga-~v~~~~~~~HD------~~~A~vshlPh~ia~aL~~~~~~---~~~~~~ 220 (341)
T 3ktd_A 151 FDQLFDGTDINSTWISIWKDVVQMALAVGA-EVVPSRVGPHD------AAAARVSHLTHILAETLAIVGDN---GGALSL 220 (341)
T ss_dssp CGGGTSSCCCCHHHHHHHHHHHHHHHHTTC-EEEECCHHHHH------HHHHHHTHHHHHHHHHHHHHHHH---THHHHH
T ss_pred eCCCCChhhhccchHHHHHHHHHHHHHcCC-EEEEeCHHHHH------HHHHHHhHHHHHHHHHHHHHhhc---chHHHH
Confidence 98887777 99999999999997 45555544443 568888999985544 3444322 244555
Q ss_pred HHHHHHHH
Q 012479 336 KNTVECIT 343 (462)
Q Consensus 336 ~~~~e~i~ 343 (462)
.++.....
T Consensus 221 ~laa~gfr 228 (341)
T 3ktd_A 221 SLAAGSYR 228 (341)
T ss_dssp HHCCHHHH
T ss_pred HHccccHH
Confidence 55554444
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-18 Score=168.49 Aligned_cols=206 Identities=13% Similarity=0.054 Sum_probs=151.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+||+||| +|+||.++|++|++. |++|++.++... .+..+++++||+||++||+..
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~------G~~V~~~~~~~~------------------~~~~~~~~~aDvVilavp~~~ 77 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDW------------------AVAESILANADVVIVSVPINL 77 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCG------------------GGHHHHHTTCSEEEECSCGGG
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCeEEEEECCcc------------------cCHHHHhcCCCEEEEeCCHHH
Confidence 7999999 999999999999998 988877765422 135678899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCC
Q 012479 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~t 270 (462)
..++++++.++++++++|++++|++....+......+ .+++..||.. ++.. .. ..|.+++++++. +
T Consensus 78 ~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~--~~~v~~hP~~-g~~~-~~--------~~g~~~~l~~~~--~ 143 (298)
T 2pv7_A 78 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPMF-GADI-AS--------MAKQVVVRCDGR--F 143 (298)
T ss_dssp HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEECS-CTTC-SC--------CTTCEEEEEEEE--C
T ss_pred HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC--CCEEeeCCCC-CCCc-hh--------hcCCeEEEecCC--C
Confidence 9999999999999999999999886432221001222 5788889863 2221 12 246677788765 6
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHH---H
Q 012479 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIV-ESLFRRFTENGMNEDLAYKNTVECITGI---I 346 (462)
Q Consensus 271 gea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pali-ea~~d~~v~~G~~~e~A~~~~~e~i~Gl---i 346 (462)
.++++.+..+++.+|.. ++.++.+ ..+..+.+++++|+++ -++.+.+.+.|++++++++++.+.+.++ +
T Consensus 144 ~~~~~~v~~l~~~~G~~-~~~~~~~------~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~~~la~~~f~~~~~~~ 216 (298)
T 2pv7_A 144 PERYEWLLEQIQIWGAK-IYQTNAT------EHDHNMTYIQALRHFSTFANGLHLSKQPINLANLLALSSPIYRLELAMI 216 (298)
T ss_dssp GGGTHHHHHHHHHTTCE-EEECCHH------HHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCE-EEECCHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhcCHHHHHHHHHH
Confidence 78899999999999973 4333322 2346688899999864 6677777789999999999999998862 3
Q ss_pred HHHHHHhcHHHHHHhcC
Q 012479 347 SKIISTQGMLAVYNSFS 363 (462)
Q Consensus 347 ~~li~e~G~~~m~~~vs 363 (462)
+++. ..--..++|.++
T Consensus 217 ~ria-~~~p~~~~di~~ 232 (298)
T 2pv7_A 217 GRLF-AQDAELYADIIM 232 (298)
T ss_dssp HHHH-TSCHHHHHHHHC
T ss_pred HHHh-cCCHHHHHHHHH
Confidence 4433 233455566665
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-18 Score=164.06 Aligned_cols=222 Identities=13% Similarity=0.077 Sum_probs=160.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
|||+|||+|+||.+++.+|.+. |++|++.++. .+..+.+.+.|+.. ....+++++ +++|+||+++|++..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~--~~~~~~~~~-~~~D~vi~av~~~~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVSRQ-QSTCEKAVERQLVD--EAGQDLSLL-QTAKIIFLCTPIQLI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTSCS--EEESCGGGG-TTCSEEEECSCHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHhCCCCc--cccCCHHHh-CCCCEEEEECCHHHH
Confidence 5899999999999999999998 8887766554 44455666777631 114577788 999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCC------CchhhHHhhhcCccccCCCceEEEee
Q 012479 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Png------pg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
.++++++.++++++++|+++++++....+...-.++ +++..||.. |.+...++ +.|.++.+++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~---~~~~~~p~~g~~~~gp~~a~~~~--------~~g~~~~~~~ 139 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMAGTAAQGIDGAEENL--------FVNAPYVLTP 139 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECCCCSCSSGGGCCTTT--------TTTCEEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC---CEeecCcccCCccCCHHHHhHHH--------hCCCcEEEec
Confidence 999999999999999988887775432221000222 567667753 33332122 2466777888
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-HHHHHHHHHHHcCCC--HHHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMN--EDLAYKNTVECI 342 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-liea~~d~~v~~G~~--~e~A~~~~~e~i 342 (462)
....+.+..+.+..+++.+|.. ++.++ +. ..++.+.+++.+|+ +..++.+.+++.|++ ++.++.++.+.+
T Consensus 140 ~~~~~~~~~~~v~~l~~~~g~~-~~~~~---~~---~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~~~ 212 (279)
T 2f1k_A 140 TEYTDPEQLACLRSVLEPLGVK-IYLCT---PA---DHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASSGF 212 (279)
T ss_dssp CTTCCHHHHHHHHHHHGGGTCE-EEECC---HH---HHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCE-EEEcC---HH---HHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCCcc
Confidence 7777899999999999999963 33221 22 35567888888876 666888899999988 899999999999
Q ss_pred HHHHHHHHHHhcHHHHHHhcC
Q 012479 343 TGIISKIISTQGMLAVYNSFS 363 (462)
Q Consensus 343 ~Gli~~li~e~G~~~m~~~vs 363 (462)
.+ ++++. ..--..++|.++
T Consensus 213 ~~-~~r~~-~~~p~~~~~~~~ 231 (279)
T 2f1k_A 213 RD-TSRVG-GGNPELGTMMAT 231 (279)
T ss_dssp HH-HHTGG-GSCHHHHHHHHH
T ss_pred cc-hhccc-CCCHHHHHHHHH
Confidence 87 56554 233455566665
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=145.06 Aligned_cols=204 Identities=13% Similarity=0.099 Sum_probs=139.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+++ +||+|||+|.||.+++.+|.+. |++ |.++++..++..+.+...|+.. ..+.+++++++|+||+++
T Consensus 8 ~~~-m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~av 76 (266)
T 3d1l_A 8 IED-TPIVLIGAGNLATNLAKALYRK------GFRIVQVYSRTEESARELAQKVEAEY----TTDLAEVNPYAKLYIVSL 76 (266)
T ss_dssp GGG-CCEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSHHHHHHHHHHTTCEE----ESCGGGSCSCCSEEEECC
T ss_pred CCC-CeEEEEcCCHHHHHHHHHHHHC------CCeEEEEEeCCHHHHHHHHHHcCCce----eCCHHHHhcCCCEEEEec
Confidence 445 7899999999999999999998 887 5565554333333344447764 567888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe-ccchHHHhhhccccCCCCccEEecccCCC--chhhHHhhhcCccccCCCceEEE
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSMGLDFPKNIGVIAVCPKGM--GPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a-~G~~i~~~~~~~i~~p~~v~VV~v~Pngp--g~~vr~lf~~G~~~~G~Gv~ali 263 (462)
|+..+.++++++.+.++++++|++. .|+....+.+ .++. ..+ .||..| +...+ . ..+.+.++
T Consensus 77 ~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~---~~~~-~~~--~~~~~~~~g~~~~-~--------~~~~~~~v 141 (266)
T 3d1l_A 77 KDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEG---HVPH-YGV--FYPMQTFSKQREV-D--------FKEIPFFI 141 (266)
T ss_dssp CHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTT---TCSS-EEE--EEECCCC---CCC-C--------CTTCCEEE
T ss_pred CHHHHHHHHHHHHhhcCCCcEEEECCCCCchHHHHH---HHHh-ccC--cCCceecCCCchh-h--------cCCCeEEE
Confidence 9999999999999999999987655 4555444332 2222 111 344443 11111 1 13566644
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF-TENGMNEDLAYKNTVECI 342 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~-v~~G~~~e~A~~~~~e~i 342 (462)
...+.+..+.+..+++.+|.. ++... ++ ....|+..+.+++.+++.+-++.+.+ .+.|+++++++.+..+++
T Consensus 142 ---~~~~~~~~~~~~~l~~~~g~~-~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~~~eal~~~~Gl~~~~~~~l~~~~~ 214 (266)
T 3d1l_A 142 ---EASSTEDAAFLKAIASTLSNR-VYDAD--SE-QRKSLHLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETA 214 (266)
T ss_dssp ---EESSHHHHHHHHHHHHTTCSC-EEECC--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHH
T ss_pred ---ecCCHHHHHHHHHHHHhcCCc-EEEeC--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234678899999999999963 33221 12 11357788888888886444444444 478999999999888888
Q ss_pred HH
Q 012479 343 TG 344 (462)
Q Consensus 343 ~G 344 (462)
.|
T Consensus 215 ~~ 216 (266)
T 3d1l_A 215 RK 216 (266)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-16 Score=150.96 Aligned_cols=212 Identities=12% Similarity=0.054 Sum_probs=133.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+||+|||+|+||.+++++|.+. ++|+ +++++.++..+.+...|. . ..+++++++++|+||+++|++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~~~~~~~~~~~~g~-~----~~~~~~~~~~~DvVilav~~~~ 70 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRSIDRARNLAEVYGG-K----AATLEKHPELNGVVFVIVPDRY 70 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----------CCCEECSSHHHHHHHHHHTCC-C----CCSSCCCCC---CEEECSCTTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHHHHHcCC-c----cCCHHHHHhcCCEEEEeCChHH
Confidence 6899999999999999998653 3453 555543333333345565 3 5677788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEec-cchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCC
Q 012479 191 QADNYEKIFSCMKPNSILGLSH-GFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~-G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~ 269 (462)
+.++++++. +++++|++++ ++.+..+.. ..+.....+..+|++|... +.+ .+++..++.
T Consensus 71 ~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~---~~~~~~~p~~~~~g~~~~~--~~~--------~~~~~~~~~---- 130 (276)
T 2i76_A 71 IKTVANHLN---LGDAVLVHCSGFLSSEIFKK---SGRASIHPNFSFSSLEKAL--EMK--------DQIVFGLEG---- 130 (276)
T ss_dssp HHHHHTTTC---CSSCCEEECCSSSCGGGGCS---SSEEEEEECSCC--CTTGG--GCG--------GGCCEEECC----
T ss_pred HHHHHHHhc---cCCCEEEECCCCCcHHHHHH---hhccccchhhhcCCCchhH--HHh--------CCCeEEEEe----
Confidence 888887765 6788776555 555544332 1110111222344544332 112 256665543
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q 012479 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVECITGIISK 348 (462)
Q Consensus 270 tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-liea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~ 348 (462)
+.+.++.++.+++.+|.. ++.. .+...+.++..+++++.++. ++....+.+++.|+++++|+ ..+.+.| .++
T Consensus 131 ~~~~~~~~~~l~~~lG~~-~~~v---~~~~~~~~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~--~~~l~~~-~~~ 203 (276)
T 2i76_A 131 DERGLPIVKKIAEEISGK-YFVI---PSEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELL--IHTLMKG-VAD 203 (276)
T ss_dssp CTTTHHHHHHHHHHHCSC-EEEC---CGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHH--HHHHHHH-HHH
T ss_pred ChHHHHHHHHHHHHhCCC-EEEE---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH--HHHHHHH-HHH
Confidence 345688999999999963 3333 23334467777888777775 44444567778999999987 7788887 788
Q ss_pred HHHHhcHHHHHHhcCCc
Q 012479 349 IISTQGMLAVYNSFSGE 365 (462)
Q Consensus 349 li~e~G~~~m~~~vs~~ 365 (462)
++.+.| -++.++.|
T Consensus 204 ~~~~~g---p~~~~tgP 217 (276)
T 2i76_A 204 NIKKMR---VECSLTGP 217 (276)
T ss_dssp HHHHSC---GGGGCCSH
T ss_pred HHHhcC---hHhhCCCC
Confidence 888888 26777643
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.9e-14 Score=136.01 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=142.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-----------C--------------ceec
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------G--------------FTEE 165 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-----------G--------------~~~~ 165 (462)
++||+|||+|+||.++|+.|..+ |++|++.+++ .+..+.+.+. | +..
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~------G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~- 75 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH------GFAVTAYDIN-TDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY- 75 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-
Confidence 48999999999999999999999 9998876655 3334444332 2 222
Q ss_pred CCCcCCHhhhhccCCeEEEeecch--hHHHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCch
Q 012479 166 NGTLGDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~--a~~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
..++++++++||+||+++|+. ...++++++.++++++++|+ .++++.+..+.. .++...+++++||..|..
T Consensus 76 ---~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~---~~~~~~~~ig~h~~~p~~ 149 (283)
T 4e12_A 76 ---SDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG---YTGRGDKFLALHFANHVW 149 (283)
T ss_dssp ---ESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHH---HHSCGGGEEEEEECSSTT
T ss_pred ---eCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEccCCCcc
Confidence 467888999999999999987 55678999999999999876 567777655543 223345899999998865
Q ss_pred hhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHH
Q 012479 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d 322 (462)
. +-...++++...+.+.++.+..+++.+|...+. .. .+ .. -| +..-.+.+++...+.
T Consensus 150 ~--------------~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~-v~--~~-~~-g~----i~nr~~~~~~~ea~~ 206 (283)
T 4e12_A 150 V--------------NNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIE-LK--KE-KA-GY----VLNSLLVPLLDAAAE 206 (283)
T ss_dssp T--------------SCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEE-CS--SC-CT-TT----THHHHHHHHHHHHHH
T ss_pred c--------------CceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEE-Ee--cC-CC-CE----EehHHHHHHHHHHHH
Confidence 4 233456778888999999999999999964221 11 11 11 12 122223334444455
Q ss_pred HHHHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHH
Q 012479 323 RFTENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYN 360 (462)
Q Consensus 323 ~~v~~G~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~~ 360 (462)
.+.+.|.++++.....-... .| --+++-..|++..++
T Consensus 207 l~~~g~~~~~~id~~~~~~~g~~~G-p~~~~D~~Gld~~~~ 246 (283)
T 4e12_A 207 LLVDGIADPETIDKTWRIGTGAPKG-PFEIFDIVGLTTAYN 246 (283)
T ss_dssp HHHTTSCCHHHHHHHHHHHHCCSSC-HHHHHHHHCHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHhccCCCcC-HHHHHHhccHHHHHH
Confidence 55556679987555322211 14 345555667755544
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=138.83 Aligned_cols=162 Identities=19% Similarity=0.153 Sum_probs=111.4
Q ss_pred ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch--------------hHHHHHHcCceecCCC
Q 012479 103 LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------SFAEARAAGFTEENGT 168 (462)
Q Consensus 103 ~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~--------------s~~~A~~~G~~~~d~~ 168 (462)
.....+.+ +||+|||+|+||.++|++|.+. |++|++++|..++ ..+.+.+.|...
T Consensus 12 ~~~~~~~~-~kIgiIG~G~mG~alA~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 80 (245)
T 3dtt_A 12 HENLYFQG-MKIAVLGTGTVGRTMAGALADL------GHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH---- 80 (245)
T ss_dssp -------C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE----
T ss_pred ccccccCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee----
Confidence 33477888 9999999999999999999999 9999888776443 122222334432
Q ss_pred cCCHhhhhccCCeEEEeecchhHHHHHHHH-HhcCCCCcEEEEec-cc----------------h-HHHhhhccccCCCC
Q 012479 169 LGDIYETISGSDLVLLLISDAAQADNYEKI-FSCMKPNSILGLSH-GF----------------L-LGHLQSMGLDFPKN 229 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~~~vl~eI-~~~Lk~gaiL~~a~-G~----------------~-i~~~~~~~i~~p~~ 229 (462)
..++.|++++||+||+++|+..+.+++.++ .+.+ +|++|++++ |+ . ...+++ .+| +
T Consensus 81 ~~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~---~l~-~ 155 (245)
T 3dtt_A 81 LAAFADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQR---TFP-E 155 (245)
T ss_dssp EEEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHH---HST-T
T ss_pred ccCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHH---HCC-C
Confidence 567889999999999999999999999998 7887 888877665 22 1 233433 445 3
Q ss_pred ccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 230 v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.+||+.+|+.++++....-.. -.|-..++.... +.++.+.+..+++.+|..
T Consensus 156 ~~vv~~~~~~~a~v~~~~~~a-----~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~ 206 (245)
T 3dtt_A 156 AKVVKTLNTMNASLMVDPGRA-----AGGDHSVFVSGN--DAAAKAEVATLLKSLGHQ 206 (245)
T ss_dssp SEEEECSTTSCHHHHHCGGGT-----GGGCCCEEEECS--CHHHHHHHHHHHHHTTCC
T ss_pred CeEEEeecccCHHHhcCcccc-----CCCCeeEEEECC--CHHHHHHHHHHHHHcCCC
Confidence 689999999988874321100 012222222232 688999999999999964
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=138.64 Aligned_cols=153 Identities=13% Similarity=0.031 Sum_probs=109.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
+||+|||+|+||.++|++|++. |++|+.+++. +.+++|| |+++|++++
T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~------G~~V~~~~~~------------------------~~~~~aD--ilavP~~ai 54 (232)
T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSV------GHYVTVLHAP------------------------EDIRDFE--LVVIDAHGV 54 (232)
T ss_dssp CEEEEECCSCCCSCHHHHHHHT------TCEEEECSSG------------------------GGGGGCS--EEEECSSCH
T ss_pred cEEEEEeeCHHHHHHHHHHHHC------CCEEEEecCH------------------------HHhccCC--EEEEcHHHH
Confidence 7999999999999999999999 9887654441 1156789 999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecc-chHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCC
Q 012479 192 ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL~~a~G-~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~t 270 (462)
.++++++.+++++|++|++++| .+...+.. ..+.+..||..||+. |.+..++.. +
T Consensus 55 ~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~---~~~~g~~fvg~HPm~------------------g~~~~i~a~---d 110 (232)
T 3dfu_A 55 EGYVEKLSAFARRGQMFLHTSLTHGITVMDP---LETSGGIVMSAHPIG------------------QDRWVASAL---D 110 (232)
T ss_dssp HHHHHHHHTTCCTTCEEEECCSSCCGGGGHH---HHHTTCEEEEEEEEE------------------TTEEEEEES---S
T ss_pred HHHHHHHHHhcCCCCEEEEECCcCHHHHHHH---HHhCCCcEEEeeeCC------------------CCceeeeCC---C
Confidence 9999999999999999998765 44333322 113467899999972 234434433 6
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHH
Q 012479 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF 324 (462)
Q Consensus 271 gea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~ 324 (462)
.++++.++.|++.+|. +++..+. .+-|.|++....+.-+.+++....+.+
T Consensus 111 ~~a~~~l~~L~~~lG~-~vv~~~~---~~hd~~~AAvsh~nhLv~L~~~A~~ll 160 (232)
T 3dfu_A 111 ELGETIVGLLVGELGG-SIVEIAD---DKRAQLAAALTYAGFLSTLQRDASYFL 160 (232)
T ss_dssp HHHHHHHHHHHHHTTC-EECCCCG---GGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-EEEEeCH---HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7799999999999997 4444433 334477665444444445555554444
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-14 Score=133.91 Aligned_cols=154 Identities=14% Similarity=0.101 Sum_probs=110.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEE-EecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
|+||+|||+|+||.++|.+|.+. |++|++ +.|..++..+.+++.|... ..+..++++++|+||+++|++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~------g~~V~~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDvVilavp~~ 92 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAA------QIPAIIANSRGPASLSSVTDRFGASV----KAVELKDALQADVVILAVPYD 92 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHT------TCCEEEECTTCGGGGHHHHHHHTTTE----EECCHHHHTTSSEEEEESCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCCHHHHHHHHHHhCCCc----ccChHHHHhcCCEEEEeCChH
Confidence 38999999999999999999998 888877 5555455555566667653 345667789999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEE-Eeccc--------------hHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccc
Q 012479 190 AQADNYEKIFSCMKPNSILG-LSHGF--------------LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~-~a~G~--------------~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~ 254 (462)
.+.++++++.+ + ++++|+ .+.|+ ....+++ .+| +.+|++++|+.|...... |...
T Consensus 93 ~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~---~l~-~~~vv~~~~~~~~~v~~~----g~~~ 162 (220)
T 4huj_A 93 SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSE---LVP-GAKVVKAFNTLPAAVLAA----DPDK 162 (220)
T ss_dssp GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHH---HST-TCEEEEESCSSCHHHHTS----CSBC
T ss_pred HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHH---HCC-CCCEEECCCCCCHHHhhh----Cccc
Confidence 99999999887 5 577655 45566 3445544 445 568999999998776321 1000
Q ss_pred cCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 255 ~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.+.+...+++ .. +.++.+.+..+++.+|..
T Consensus 163 ~~~~~~v~~~-g~--~~~~~~~v~~l~~~~G~~ 192 (220)
T 4huj_A 163 GTGSRVLFLS-GN--HSDANRQVAELISSLGFA 192 (220)
T ss_dssp SSCEEEEEEE-ES--CHHHHHHHHHHHHHTTCE
T ss_pred CCCCeeEEEe-CC--CHHHHHHHHHHHHHhCCC
Confidence 1122333333 32 489999999999999974
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.3e-14 Score=138.32 Aligned_cols=184 Identities=12% Similarity=0.047 Sum_probs=121.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecC-CchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~-~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
++||+|||+|+||.++|++|.+. |+ +|++++++ +.+..+.+.+.|+.. ..++.|++++||+||+++|+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~ 93 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQA------GAIDMAAYDAASAESWRPRAEELGVSC----KASVAEVAGECDVIFSLVTA 93 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHH------SCCEEEEECSSCHHHHHHHHHHTTCEE----CSCHHHHHHHCSEEEECSCT
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCeEEEEcCCCCHHHHHHHHHCCCEE----eCCHHHHHhcCCEEEEecCc
Confidence 38999999999999999999999 99 88877775 255667777888875 67899999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchHHH---hhhccccCCC--CccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPK--NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~---~~~~~i~~p~--~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
....++++++.++++++++|++.+++.... +.. ..... ++.++- +|-..+... ..| ..+. +
T Consensus 94 ~~~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~--~~~~~~~g~~~vd-~pv~g~~~~----~~g------~l~i-~ 159 (312)
T 3qsg_A 94 QAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGD--VISRHRPSAQYAA-VAVMSAVKP----HGH------RVPL-V 159 (312)
T ss_dssp TTHHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHH--HHHHHCTTCEEEE-EEECSCSTT----TGG------GSEE-E
T ss_pred hhHHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHH--HHHhhcCCCeEEe-ccccCCchh----hcC------CEEE-E
Confidence 999999999999999999999887764221 111 01112 455654 232211110 012 2443 4
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH--------HHHHHHHHHHHHcCCCHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH--------GIVESLFRRFTENGMNED 332 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p--------aliea~~d~~v~~G~~~e 332 (462)
+...+ . +.++.+++.+|.. ++.+. +..+....+-.+.+ .+.|++. .+.+.|++++
T Consensus 160 vgg~~----~-~~~~~ll~~~g~~-~~~~g-------~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~-la~~~Gld~~ 222 (312)
T 3qsg_A 160 VDGDG----A-RRFQAAFTLYGCR-IEVLD-------GEVGGAALLKMCRSAVLKGLEALFLEALA-AAEKMGLADR 222 (312)
T ss_dssp EESTT----H-HHHHHHHHTTTCE-EEECC-------SSTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTCHHH
T ss_pred ecCCh----H-HHHHHHHHHhCCC-eEEcC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHH
Confidence 43332 1 7889999999964 22111 11233333322222 2444444 7788999984
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=134.47 Aligned_cols=199 Identities=15% Similarity=0.070 Sum_probs=128.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc-hh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd-~a 190 (462)
+||+|||+|+||.++|++|.+. |++|++++|+.+ ..+...+.|+.. ..+.+|++++||+||+++|+ ..
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~~ 70 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA------GCSVTIWNRSPE-KAEELAALGAER----AATPCEVVESCPVTFAMLADPAA 70 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGG-GGHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHCCCee----cCCHHHHHhcCCEEEEEcCCHHH
Confidence 7999999999999999999999 999887766544 455666678875 67899999999999999994 56
Q ss_pred HHHHH---HHHHhcCCCCcEEEEeccchHHHhhhc-cccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 191 QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 191 ~~~vl---~eI~~~Lk~gaiL~~a~G~~i~~~~~~-~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
..+++ +++.+.+++|++|++.++......... ......++.++. +|...+... . . .|...+++ .
T Consensus 71 ~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~--a-~-------~g~l~~~~-g 138 (287)
T 3pef_A 71 AEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKP--A-E-------DGTLIILA-A 138 (287)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHH--H-H-------HTCEEEEE-E
T ss_pred HHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHH--H-h-------cCCEEEEE-e
Confidence 77888 789999999999988887643221110 011123566776 775433331 1 2 24444343 3
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~ 337 (462)
. +.+..+.+..+++.+|.. ++...-......-.+.... +.+...+++.-++..+.+.|+++++.+..
T Consensus 139 g--~~~~~~~~~~ll~~~g~~-~~~~g~~g~~~~~Kl~~N~-~~~~~~~~~~E~~~l~~~~G~d~~~~~~~ 205 (287)
T 3pef_A 139 G--DRNLYDEAMPGFEKMGKK-IIHLGDVGKGAEMKLVVNM-VMGGMMACFCEGLALGEKAGLATDAILDV 205 (287)
T ss_dssp E--CHHHHHHHHHHHHHHEEE-EEECSSTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHhCCC-eEEeCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 478899999999999964 2222111111000111111 11112223444456678899999877764
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.5e-13 Score=132.05 Aligned_cols=217 Identities=13% Similarity=0.114 Sum_probs=140.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCceecC-------------
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN------------- 166 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d------------- 166 (462)
|+||+|||+|+||.++|..|.++ |++|++.++..+ ..+.+ .+.|.....
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 87 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTED-ILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 87 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHH-HHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhc
Confidence 47999999999999999999999 999887766533 23322 123321000
Q ss_pred -CCcCCHhhhhccCCeEEEeecchh--HHHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCch
Q 012479 167 -GTLGDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 167 -~~~~~~~eav~~ADvViLavpd~a--~~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
....++++++++||+||+++|+.. ..++++++.++++++++|+ .++|+.+..+.. .++..-++++.||+.|..
T Consensus 88 i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~---~~~~~~~~~g~h~~~P~~ 164 (302)
T 1f0y_A 88 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 164 (302)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred eEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCCcccEEEEecCCCcc
Confidence 014577789999999999999865 3568889999999999765 567887665543 333334799999998865
Q ss_pred hhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHH
Q 012479 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d 322 (462)
. +-...++.....+++..+.+..+++.+|.. ++.. .+. .-| +..-.+.+++.-.+.
T Consensus 165 ~--------------~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~-~v~~---~~~--~g~----i~nr~l~~~~~Ea~~ 220 (302)
T 1f0y_A 165 V--------------MKLVEVIKTPMTSQKTFESLVDFSKALGKH-PVSC---KDT--PGF----IVNRLLVPYLMEAIR 220 (302)
T ss_dssp T--------------CCEEEEECCTTCCHHHHHHHHHHHHHTTCE-EEEE---CSC--TTT----THHHHHHHHHHHHHH
T ss_pred c--------------CceEEEeCCCCCCHHHHHHHHHHHHHcCCc-eEEe---cCc--ccc----cHHHHHHHHHHHHHH
Confidence 4 122335667778999999999999999963 2211 111 111 122233345655666
Q ss_pred HHHHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHhc
Q 012479 323 RFTENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNSF 362 (462)
Q Consensus 323 ~~v~~G~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~~~v 362 (462)
.+.+.|.++++......... .| --.+.-..|++.+++..
T Consensus 221 l~~~g~~~~~~id~~~~~g~g~p~G-P~~~~D~~Gld~~~~~~ 262 (302)
T 1f0y_A 221 LYERGDASKEDIDTAMKLGAGYPMG-PFELLDYVGLDTTKFIV 262 (302)
T ss_dssp HHHTTSSCHHHHHHHHHHHHCCSSC-HHHHHHHHCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHHHHH
Confidence 66677788877554322111 13 23455556765555443
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-13 Score=138.71 Aligned_cols=212 Identities=13% Similarity=0.108 Sum_probs=140.7
Q ss_pred ccceeecCcccccccc-----cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-------hHHHH
Q 012479 90 DEYIVRGGRDLFNLLP-----DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-------SFAEA 157 (462)
Q Consensus 90 ~e~~~~~~~~~f~~~~-----~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-------s~~~A 157 (462)
.|..++ +|..|... ..-.-++||+|||+|.||.+||+.|.++ |++|++.+++.++ ..+.+
T Consensus 30 a~~~~~--~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~a------G~~V~l~D~~~e~a~~~i~~~l~~~ 101 (460)
T 3k6j_A 30 AHSLAG--QWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLA------GIETFLVVRNEQRCKQELEVMYARE 101 (460)
T ss_dssp TTCCTT--SCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred HHHhhc--cccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHC------CCeEEEEECcHHHHHHHHHHHHHHH
Confidence 444444 68777332 1223348999999999999999999999 9999887765442 12334
Q ss_pred HHcCceecC---------CCcCCHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchHHHhhhcccc
Q 012479 158 RAAGFTEEN---------GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLD 225 (462)
Q Consensus 158 ~~~G~~~~d---------~~~~~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~ 225 (462)
.+.|..... ....++ +++++||+||.++|.... .+++++|.++++++++|+ .++++.+..+.+ .
T Consensus 102 ~~~G~l~~~~~~~~~~~i~~t~dl-~al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~---~ 177 (460)
T 3k6j_A 102 KSFKRLNDKRIEKINANLKITSDF-HKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISS---V 177 (460)
T ss_dssp HHTTSCCHHHHHHHHTTEEEESCG-GGCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHT---T
T ss_pred HHcCCCCHHHHHHHhcceEEeCCH-HHHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHH---h
Confidence 445532100 013455 478999999999997543 468899999999999985 567777766654 3
Q ss_pred CCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhh
Q 012479 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGE 305 (462)
Q Consensus 226 ~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfge 305 (462)
++...+|+++||..|.+. +-..-+.+....+++.++.+..+++.+|... +.. .+ ..-|
T Consensus 178 ~~~p~r~iG~HffnPv~~--------------m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~-v~v---~d--~pGf-- 235 (460)
T 3k6j_A 178 LRDPSNLVGIHFFNPANV--------------IRLVEIIYGSHTSSQAIATAFQACESIKKLP-VLV---GN--CKSF-- 235 (460)
T ss_dssp SSSGGGEEEEECCSSTTT--------------CCEEEEECCSSCCHHHHHHHHHHHHHTTCEE-EEE---SS--CCHH--
T ss_pred ccCCcceEEEEecchhhh--------------CCEEEEEeCCCCCHHHHHHHHHHHHHhCCEE-EEE---ec--ccHH--
Confidence 333458999999988764 1223356677889999999999999999742 212 11 1112
Q ss_pred hHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 012479 306 RGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 306 qtvL~G~~paliea~~d~~v~~G~~~e~A~~~ 337 (462)
+..-.+.+++...+..+.+.|.++++....
T Consensus 236 --i~Nril~~~~~EA~~l~~~~Ga~~e~ID~a 265 (460)
T 3k6j_A 236 --VFNRLLHVYFDQSQKLMYEYGYLPHQIDKI 265 (460)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 122222234444444455899999887764
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-13 Score=131.15 Aligned_cols=156 Identities=14% Similarity=0.096 Sum_probs=105.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCC--------CcCCHhhhhc---cC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--------TLGDIYETIS---GS 179 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~--------~~~~~~eav~---~A 179 (462)
++||+|||+|+||.++|.+|.++ |++|++.+|+. +..+...+.|+...+. ...+..++.+ ++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG------GNDVTLIDQWP-AHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQV 75 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHhC------CCcEEEEECCH-HHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCC
Confidence 47999999999999999999998 99888776653 3455555557543100 0113344444 89
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEE-eccchH-HHhhhccccCCCCccEEecccC------CCchhhHHhhhcC
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL-GHLQSMGLDFPKNIGVIAVCPK------GMGPSVRRLYVQG 251 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL~~-a~G~~i-~~~~~~~i~~p~~v~VV~v~Pn------gpg~~vr~lf~~G 251 (462)
|+||+++|+....++++++.++++++++|++ +.|+.. ..+.+ .+++. +|+..+|. +|+...
T Consensus 76 d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~---~~~~~-~vi~g~~~~~~~~~~p~~~~------- 144 (316)
T 2ew2_A 76 DLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEK---YVPKE-NILVGITMWTAGLEGPGRVK------- 144 (316)
T ss_dssp SEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTT---TSCGG-GEEEEEECCCCEEEETTEEE-------
T ss_pred CEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHH---HcCCc-cEEEEEeeeeeEEcCCCEEE-------
Confidence 9999999999999999999999999987654 467754 34433 33433 56643321 222221
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 252 ~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
..+.|.+.+ .+....+.+..+.+..+++.+|..
T Consensus 145 --~~~~g~~~i-~~~~~~~~~~~~~~~~ll~~~g~~ 177 (316)
T 2ew2_A 145 --LLGDGEIEL-ENIDPSGKKFALEVVDVFQKAGLN 177 (316)
T ss_dssp --ECSCCCEEE-EESSGGGHHHHHHHHHHHHHTTCC
T ss_pred --EecCCcEEE-eecCCCccHHHHHHHHHHHhCCCC
Confidence 013677774 444445678889999999999964
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=134.02 Aligned_cols=201 Identities=13% Similarity=0.035 Sum_probs=127.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch-
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA- 189 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~- 189 (462)
|+||+|||+|+||.++|++|.+. |++|++++|+.++ .+...+.|+.. ..+++|++++||+||+++|+.
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~----~~~~~~~~~~advvi~~v~~~~ 69 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA------GFDVTVWNRNPAK-CAPLVALGARQ----ASSPAEVCAACDITIAMLADPA 69 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH------TCCEEEECSSGGG-GHHHHHHTCEE----CSCHHHHHHHCSEEEECCSSHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHCCCee----cCCHHHHHHcCCEEEEEcCCHH
Confidence 57999999999999999999999 9998877766444 45555668775 678999999999999999986
Q ss_pred hHHHHH---HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 190 AQADNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 190 a~~~vl---~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
...+++ +++.+.+++|++|++++..... .+.+ .....++.++.. |...+.. .-. .|...++
T Consensus 70 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~--~~~~~g~~~~~~-pv~g~~~---~a~-------~g~l~~~ 136 (287)
T 3pdu_A 70 AAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGA--AVTARGGRFLEA-PVSGTKK---PAE-------DGTLIIL 136 (287)
T ss_dssp HHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEEC-CEECCHH---HHH-------HTCEEEE
T ss_pred HHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEEC-CccCCHH---HHh-------cCCEEEE
Confidence 566788 7789999999999888775432 1111 011235666653 5432221 111 2444434
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e 340 (462)
+ .. +.+..+.++.+++.+|.. ++...-...-..-.+.... +.+...+++.-++..+.+.|++++..+...-+
T Consensus 137 ~-gg--~~~~~~~~~~ll~~~g~~-~~~~g~~g~~~~~Kl~~N~-~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 208 (287)
T 3pdu_A 137 A-AG--DQSLFTDAGPAFAALGKK-CLHLGEVGQGARMKLVVNM-IMGQMMTALGEGMALGRNCGLDGGQLLEVLDA 208 (287)
T ss_dssp E-EE--CHHHHHHTHHHHHHHEEE-EEECSSTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred E-eC--CHHHHHHHHHHHHHhCCC-EEEcCCCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3 33 578999999999999963 2222100000000011111 11122223333355678999999988774443
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.2e-13 Score=132.51 Aligned_cols=200 Identities=15% Similarity=0.035 Sum_probs=127.5
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch-
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA- 189 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~- 189 (462)
|+||+|||+|+||.++|++|.+. |++|++++|..+ ..+...+.|+.. ..+..|++++||+||+++|+.
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~-~~~~l~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~ 89 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKN------GFKVTVWNRTLS-KCDELVEHGASV----CESPAEVIKKCKYTIAMLSDPC 89 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSGG-GGHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHH
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHCCCeE----cCCHHHHHHhCCEEEEEcCCHH
Confidence 38999999999999999999999 999887766544 455556778875 678999999999999999975
Q ss_pred hHHHHH---HHHHhcCCCCcEEEEeccchHHHhhh-ccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 190 AQADNY---EKIFSCMKPNSILGLSHGFLLGHLQS-MGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 190 a~~~vl---~eI~~~Lk~gaiL~~a~G~~i~~~~~-~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
...+++ +++.+.+++|++|+++++........ .......++.++. +|...+.. ..+ .|...+++
T Consensus 90 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~--~a~--------~g~l~i~~- 157 (310)
T 3doj_A 90 AALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKK--PAE--------DGQLIILA- 157 (310)
T ss_dssp HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHH--HHH--------HTCEEEEE-
T ss_pred HHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChh--HHh--------cCCeEEEE-
Confidence 556788 67899999999999888764322110 0011123566766 67432222 111 24544444
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~ 337 (462)
.. +.+..+.+..+++.+|.. ++...-...-..-.+-... +.+...+++.-++..+.+.|+++++.+..
T Consensus 158 gg--~~~~~~~~~~ll~~~g~~-~~~~g~~g~a~~~Kl~~N~-~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~ 225 (310)
T 3doj_A 158 AG--DKALFEESIPAFDVLGKR-SFYLGQVGNGAKMKLIVNM-IMGSMMNAFSEGLVLADKSGLSSDTLLDI 225 (310)
T ss_dssp EE--CHHHHHHHHHHHHHHEEE-EEECSSTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHHhCCC-EEEeCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33 478999999999999963 2222100000000011111 11122223333445677899999877663
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.2e-13 Score=133.81 Aligned_cols=194 Identities=18% Similarity=0.237 Sum_probs=126.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|+||||||+|+||.++|+||.++ |++|++++|+.+ ..+...+.|... ..++.|++++||+||+++|+..
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~------G~~v~v~dr~~~-~~~~l~~~Ga~~----a~s~~e~~~~~dvv~~~l~~~~ 71 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLVQS-AVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 71 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSSHH-HHHHHHHTTCEE----CSSHHHHHTTCSEEEECCSCHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhC------CCeEEEEcCCHH-HHHHHHHcCCEE----cCCHHHHHhcCCceeecCCchH
Confidence 68999999999999999999999 999988877644 456666788886 7899999999999999999887
Q ss_pred HH-HHHHH---HHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccC--CCchhhHHhhhcCccccCCCceE
Q 012479 191 QA-DNYEK---IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPK--GMGPSVRRLYVQGKEINGAGINS 261 (462)
Q Consensus 191 ~~-~vl~e---I~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~a 261 (462)
+. +|+.. +.+.+++|++|++++-.... .+.+ ..-..++.++- +|- +|... + .|--.
T Consensus 72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~--~~~~~G~~~lD-aPVsGg~~~A-----~-------~G~L~ 136 (300)
T 3obb_A 72 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTAGA-----A-------AGTLT 136 (300)
T ss_dssp HHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHHHH-----H-------HTCEE
T ss_pred HHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEe-cCCCCCHHHH-----H-------hCCEE
Confidence 75 57752 78899999999988765322 2211 11134666664 342 22222 1 24434
Q ss_pred EEeeccCCCHHHHHHHHHHHHHhCCCcccccc-hhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 262 liav~qd~tgea~e~a~al~~aiG~~~viett-f~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
+++ .. +.++.+.++.+++.+|.. ++..- .-.=.... +--+.++.+...++.|++ ..+.+.|++++..+.
T Consensus 137 imv-GG--~~~~~~~~~p~l~~~g~~-i~~~G~~G~g~~~K-l~~N~l~~~~~~a~aEa~-~la~~~Gld~~~~~~ 206 (300)
T 3obb_A 137 FMV-GG--DAEALEKARPLFEAMGRN-IFHAGPDGAGQVAK-VCNNQLLAVLMIGTAEAM-ALGVANGLEAKVLAE 206 (300)
T ss_dssp EEE-ES--CHHHHHHHHHHHHHHEEE-EEEEESTTHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHTTCCHHHHHH
T ss_pred EEE-eC--CHHHHHHHHHHHHHhCCC-EEEeCCccHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHH
Confidence 333 44 578999999999999963 22111 00000011 111222333344455554 356789999986554
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-12 Score=128.34 Aligned_cols=204 Identities=13% Similarity=0.086 Sum_probs=138.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-------CceecCCCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-------G~~~~d~~~~~~~eav~~ADvViL 184 (462)
|+|+|||+|.||.+||++|. + |++|++++++ ....+.+.+. ++.. ..++++ +++||+||.
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a------G~~V~v~d~~-~~~~~~~~~~l~~~~~~~i~~----~~~~~~-~~~aDlVie 79 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S------KHEVVLQDVS-EKALEAAREQIPEELLSKIEF----TTTLEK-VKDCDIVME 79 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHHHSCGGGGGGEEE----ESSCTT-GGGCSEEEE
T ss_pred CeEEEEeeCHHHHHHHHHHH-c------CCEEEEEECC-HHHHHHHHHHHHHHHhCCeEE----eCCHHH-HcCCCEEEE
Confidence 89999999999999999999 9 9998877665 4445666665 5553 456665 899999999
Q ss_pred eecchhH--HHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceE
Q 012479 185 LISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (462)
Q Consensus 185 avpd~a~--~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~a 261 (462)
++|+... ..++.++.+. ++++|+ .++++++..+.. ......+++.+||.-|.+. +-..
T Consensus 80 avpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf~~Pv~~--------------~~lv 140 (293)
T 1zej_A 80 AVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHWMNPPHV--------------MPLV 140 (293)
T ss_dssp CCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT--------------CCEE
T ss_pred cCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEecCcccc--------------CCEE
Confidence 9998875 3477787665 898874 677777765543 2223347999999877543 3455
Q ss_pred EEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 262 liav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
.+.+....+++.++.+..+++.+|.. ++.. .+. ...-+ ++ .+.+.||+. +++.|+++++-....-..
T Consensus 141 eiv~g~~t~~~~~~~~~~l~~~lGk~-~v~v---~d~---fi~Nr-ll---~~~~~EA~~--l~~~Gv~~e~id~~~~~g 207 (293)
T 1zej_A 141 EIVISRFTDSKTVAFVEGFLRELGKE-VVVC---KGQ---SLVNR-FN---AAVLSEASR--MIEEGVRAEDVDRVWKHH 207 (293)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHTTCE-EEEE---ESS---CHHHH-HH---HHHHHHHHH--HHHHTCCHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCe-EEEe---ccc---ccHHH-HH---HHHHHHHHH--HHHhCCCHHHHHHHHHhc
Confidence 56777788999999999999999964 2222 121 12122 22 244666655 455599998766633211
Q ss_pred ----H--HHHHHHHHHHhcHHHHHHh
Q 012479 342 ----I--TGIISKIISTQGMLAVYNS 361 (462)
Q Consensus 342 ----i--~Gli~~li~e~G~~~m~~~ 361 (462)
+ .| --+++-..|++..++.
T Consensus 208 ~g~~~~~~G-P~~l~D~~Gld~~~~~ 232 (293)
T 1zej_A 208 LGLLYTLFG-PLGNLDYIGLDVAYYA 232 (293)
T ss_dssp HHHHHHHHH-HHHHHHHHCHHHHHHH
T ss_pred CCCCCCCCC-HHHHHHHhchHHHHHH
Confidence 1 24 3556667777655443
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-13 Score=131.76 Aligned_cols=198 Identities=16% Similarity=0.129 Sum_probs=127.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch-h
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~-a 190 (462)
+||+|||+|+||.++|++|.+. |++|++++|+ ....+...+.|... ...+++|++++||+||+++|+. .
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~---~~~~~~e~~~~aDvvi~~vp~~~~ 77 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA------GLSTWGADLN-PQACANLLAEGACG---AAASAREFAGVVDALVILVVNAAQ 77 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSE---EESSSTTTTTTCSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHcCCcc---ccCCHHHHHhcCCEEEEECCCHHH
Confidence 7899999999999999999999 9998877665 44456666667652 0357889999999999999986 4
Q ss_pred HHHHH---HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 191 QADNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 191 ~~~vl---~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
...++ +++.+.+++|++|++++..... .+.+ .....++.++. +|...+... -. .|...+++
T Consensus 78 ~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~~---a~-------~g~l~~~~ 144 (303)
T 3g0o_A 78 VRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAA--ALTALNLNMLD-APVSGGAVK---AA-------QGEMTVMA 144 (303)
T ss_dssp HHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHHH---HH-------TTCEEEEE
T ss_pred HHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHH--HHHHcCCeEEe-CCCCCChhh---hh-------cCCeEEEe
Confidence 56676 6788999999999988876432 2211 11123567777 785433331 11 35555444
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCcccccc--hhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSPFTFATT--LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNT 338 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~~viett--f~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~ 338 (462)
.. +.+..+.++.+++.+|.. ++.+. ...-... .+-... +.+...+++.-++..+.+.|+++++.+...
T Consensus 145 -gg--~~~~~~~~~~ll~~~g~~-~~~~~~~~g~a~~~-Kl~~N~-~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~ 214 (303)
T 3g0o_A 145 -SG--SEAAFTRLKPVLDAVASN-VYRISDTPGAGSTV-KIIHQL-LAGVHIAAAAEAMALAARAGIPLDVMYDVV 214 (303)
T ss_dssp -EC--CHHHHHHHHHHHHHHEEE-EEEEESSTTHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred -CC--CHHHHHHHHHHHHHHCCC-EEECCCCCcHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 33 578999999999999963 22221 0000000 111111 222222333334456788999998877643
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-13 Score=132.69 Aligned_cols=198 Identities=16% Similarity=0.109 Sum_probs=129.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec-chh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-DAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp-d~a 190 (462)
+||+|||+|.||.++|.+|.+. |++|+++++...+ .+...+.|+.. ..+..++++++|+||+++| +..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~------g~~V~~~~~~~~~-~~~~~~~g~~~----~~~~~~~~~~~DvVi~av~~~~~ 99 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM------GHTVTVWNRTAEK-CDLFIQEGARL----GRTPAEVVSTCDITFACVSDPKA 99 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECSSGGG-GHHHHHTTCEE----CSCHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEcccHHHHHHHHHHHhC------CCEEEEEeCCHHH-HHHHHHcCCEE----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999998 8888777665443 44555578764 5678899999999999999 677
Q ss_pred HHHHHHH---HHhcCCCCcEEEEeccchH---HHhhhccccC-CCCccEEecccC--CCchhhHHhhhcCccccCCCceE
Q 012479 191 QADNYEK---IFSCMKPNSILGLSHGFLL---GHLQSMGLDF-PKNIGVIAVCPK--GMGPSVRRLYVQGKEINGAGINS 261 (462)
Q Consensus 191 ~~~vl~e---I~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~-p~~v~VV~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~a 261 (462)
..+++.+ +.+.++++++|++++.... ..+.+ .+ ..++.++.. |. +|... . .|...
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~~~~~v~~-p~~g~~~~~-----~-------~g~~~ 163 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQ---VIVSRGGRFLEA-PVSGNQQLS-----N-------DGMLV 163 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEEC-CEESCHHHH-----H-------HTCEE
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEc-CccCChhHH-----h-------hCCEE
Confidence 7788875 4488999998887765532 22222 12 134566643 43 22221 1 35555
Q ss_pred EEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-HHHHHHHHHHHcCCCHHHHHHHHHH
Q 012479 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNTVE 340 (462)
Q Consensus 262 liav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-liea~~d~~v~~G~~~e~A~~~~~e 340 (462)
+++.. +.+..+.+..+++.+|...+..... +...........++++... +.|++.. +.+.|+++++++....+
T Consensus 164 ~~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~--~~~~~~K~~~n~~~~~~~~~~~Ea~~l-a~~~G~~~~~~~~~~~~ 237 (316)
T 2uyy_A 164 ILAAG---DRGLYEDCSSCFQAMGKTSFFLGEV--GNAAKMMLIVNMVQGSFMATIAEGLTL-AQVTGQSQQTLLDILNQ 237 (316)
T ss_dssp EEEEE---CHHHHHHTHHHHHHHEEEEEECSST--THHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCCHHHHHHHHHH
T ss_pred EEeCC---CHHHHHHHHHHHHHhcCCEEEeCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHc
Confidence 44333 4688899999999999642111110 1111111223445565444 5555554 89999999988876655
Q ss_pred HH
Q 012479 341 CI 342 (462)
Q Consensus 341 ~i 342 (462)
+.
T Consensus 238 ~~ 239 (316)
T 2uyy_A 238 GQ 239 (316)
T ss_dssp ST
T ss_pred CC
Confidence 43
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.9e-13 Score=130.99 Aligned_cols=199 Identities=15% Similarity=0.061 Sum_probs=121.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc-hh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd-~a 190 (462)
|||+|||+|+||.+++.+|.+. |++|+++++.. +..+...+.|+.. ..+++++++++|+||+++|+ ..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~V~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~~vp~~~~ 69 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH------GYPLIIYDVFP-DACKEFQDAGEQV----VSSPADVAEKADRIITMLPTSIN 69 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT------TCCEEEECSST-HHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 5799999999999999999998 88887776654 3455556668764 56888999999999999975 45
Q ss_pred HHHHHHH---HHhcCCCCcEEEEeccchHHHhhhccccCCC-CccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 191 QADNYEK---IFSCMKPNSILGLSHGFLLGHLQSMGLDFPK-NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 191 ~~~vl~e---I~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~-~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
..+++.+ +.+++++|++|++++|+...........+++ .+. +|+.|...-..... .|...++ +.
T Consensus 70 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~----~~~~p~~~g~~~a~-------~~~~~~~-~~ 137 (296)
T 2gf2_A 70 AIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAV----FMDAPVSGGVGAAR-------SGNLTFM-VG 137 (296)
T ss_dssp HHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE----EEECCEESHHHHHH-------HTCEEEE-EE
T ss_pred HHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE----EEEcCCCCChhHHh-------cCcEEEE-eC
Confidence 5677775 5567899998888888865332210001121 222 23333322111122 2454433 33
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~ 337 (462)
.+.+..+.+..+++.+|.. ++.+.....-..-.+............+.|++. .+.+.|++++.++..
T Consensus 138 --~~~~~~~~v~~l~~~~g~~-~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~-~~~~~G~~~~~~~~~ 204 (296)
T 2gf2_A 138 --GVEDEFAAAQELLGCMGSN-VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMN-LGIRLGLDPKLLAKI 204 (296)
T ss_dssp --SCGGGHHHHHHHHTTTEEE-EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHcCC-eEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCHHHHHHH
Confidence 3578899999999999964 222111000000000011111122234556655 888999999877764
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-12 Score=136.40 Aligned_cols=214 Identities=12% Similarity=0.126 Sum_probs=141.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCceecC---------CCcC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~d---------~~~~ 170 (462)
++||+|||+|+||.++|.+|.++ |++|++.+++ .+..+.+.+ .|..... ....
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a------G~~V~l~D~~-~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH------GHQVLLYDIS-AEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVT 77 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeC
Confidence 37999999999999999999999 9998877655 333444432 3321000 0134
Q ss_pred CHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHh
Q 012479 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~l 247 (462)
+. +++++||+||+++|+... .++++++.++++++++| +.++++.+..+.. .++...++++.||..|.+..
T Consensus 78 ~~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~---~~~~p~~~ig~hf~~Pa~v~--- 150 (483)
T 3mog_A 78 DI-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAA---EIKNPERVAGLHFFNPAPVM--- 150 (483)
T ss_dssp CG-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TSSSGGGEEEEEECSSTTTC---
T ss_pred CH-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHH---HccCccceEEeeecChhhhC---
Confidence 45 478999999999998854 47899999999999987 5788888866554 33344689999999988761
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHc
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~ 327 (462)
--..++.+...+.+.++.+..+++.+|... +.. .+.. -| +..-.+.+++...+..+.+.
T Consensus 151 -----------~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~-v~v---~d~~--Gf----i~Nr~l~~~~~Ea~~l~~~g 209 (483)
T 3mog_A 151 -----------KLVEVVSGLATAAEVVEQLCELTLSWGKQP-VRC---HSTP--GF----IVNRVARPYYSEAWRALEEQ 209 (483)
T ss_dssp -----------CEEEEEECSSCCHHHHHHHHHHHHHTTCEE-EEE---ESCT--TT----THHHHTHHHHHHHHHHHHTT
T ss_pred -----------CeEEEecCCCCCHHHHHHHHHHHHHhCCEE-EEE---eccC--cc----hHHHHHHHHHHHHHHHHHhC
Confidence 233366677889999999999999999642 211 1111 11 11222233455555556666
Q ss_pred CCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHH
Q 012479 328 GMNEDLAYKNTVECI---TGIISKIISTQGMLAVYN 360 (462)
Q Consensus 328 G~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~~ 360 (462)
|.++++-....-... .| --.++-..|++..+.
T Consensus 210 ~~~~~~id~a~~~~~G~p~G-P~~l~D~~Gld~~~~ 244 (483)
T 3mog_A 210 VAAPEVIDAALRDGAGFPMG-PLELTDLIGQDVNFA 244 (483)
T ss_dssp CSCHHHHHHHHHHTTCCSSC-HHHHHHHHCHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCCC-HHHHHHHhchHHHHH
Confidence 777887665322111 13 344555667755443
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=127.57 Aligned_cols=193 Identities=12% Similarity=0.083 Sum_probs=124.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch-h
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~-a 190 (462)
+||+|||+|.||.++|++|.+. |++|++++++.++ .+.+.+.|+.. ..+++|+++ ||+||+++|+. .
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~------G~~V~~~dr~~~~-~~~~~~~g~~~----~~~~~~~~~-aDvvi~~vp~~~~ 83 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW------PGGVTVYDIRIEA-MTPLAEAGATL----ADSVADVAA-ADLIHITVLDDAQ 83 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS------TTCEEEECSSTTT-SHHHHHTTCEE----CSSHHHHTT-SSEEEECCSSHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHCCCEE----cCCHHHHHh-CCEEEEECCChHH
Confidence 6899999999999999999998 9998877765444 55566678875 678999999 99999999965 5
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeecc
Q 012479 191 QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q 267 (462)
..++++++.+++++|++|++.+..... .+.+ .....++.++. +|...+... -. .|...+++ ..
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~~---a~-------~g~l~~~~-gg 149 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELAR--DLKARDIHIVD-APVSGGAAA---AA-------RGELATMV-GA 149 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHH--HHGGGTCEEEE-CCEESCHHH---HH-------HTCEEEEE-EC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHH--HHHHcCCEEEe-CCCcCCHHH---Hh-------cCCccEEe-cC
Confidence 567899999999999999988876432 1211 11123566664 464322221 11 24444333 33
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHH
Q 012479 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLA 334 (462)
Q Consensus 268 d~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A 334 (462)
+.+..+.+..+++.+|.. ++.+.-...-..-.+-... +.+...+++.-++..+.+.|+++++.
T Consensus 150 --~~~~~~~~~~ll~~~g~~-~~~~g~~g~a~~~Kl~~N~-~~~~~~~~~~E~~~l~~~~G~d~~~~ 212 (296)
T 3qha_A 150 --DREVYERIKPAFKHWAAV-VIHAGEPGAGTRMKLARNM-LTFTSYAAACEAMKLAEAAGLDLQAL 212 (296)
T ss_dssp --CHHHHHHHHHHHHHHEEE-EEEEESTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred --CHHHHHHHHHHHHHHcCC-eEEcCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 578999999999999963 2222100000000111121 11222223344455678899999876
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-13 Score=132.69 Aligned_cols=195 Identities=13% Similarity=0.136 Sum_probs=118.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
+||||||+|+||.++|+||.++ |++|++++|+.++ .+...+.|... ..++.|+++++|+||+++|+..+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~G~~~----~~s~~e~~~~~dvvi~~l~~~~~ 74 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA------GYELVVWNRTASK-AEPLTKLGATV----VENAIDAITPGGIVFSVLADDAA 74 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEC--------CTTTTTTCEE----CSSGGGGCCTTCEEEECCSSHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHcCCeE----eCCHHHHHhcCCceeeeccchhh
Confidence 5899999999999999999999 9999888776444 44455678875 67899999999999999998776
Q ss_pred H-HHH-HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 192 A-DNY-EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 192 ~-~vl-~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
. +++ .++.+.+++|+++++.+-+... .+.+ .....++.++- +|-.-+... =. .|...++. .
T Consensus 75 ~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~--~~~~~g~~~ld-apVsGg~~~---a~-------~g~l~im~-g 140 (297)
T 4gbj_A 75 VEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQ--VHEWYGAHYVG-APIFARPEA---VR-------AKVGNICL-S 140 (297)
T ss_dssp HHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEECCHHH---HH-------HTCCEEEE-E
T ss_pred HHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHH--HHHhcCCceec-CCcCCCccc---cc-------cccceeec-c
Confidence 5 454 4688999999999888765322 1111 11124566654 342211110 01 23434232 3
Q ss_pred cCCCHHHHHHHHHHHHHhCCCccccc--chhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFAT--TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viet--tf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
. +.++.+.++.+++.+|.. ++.. ..-.=.... +-.+..+.+...++.|+ +..+.+.|++++..+.
T Consensus 141 G--~~~~~~~~~~~l~~~g~~-i~~~g~~~G~g~~~K-l~~N~~~~~~~~~~aEa-~~la~~~Gld~~~~~~ 207 (297)
T 4gbj_A 141 G--NAGAKERIKPIVENFVKG-VFDFGDDPGAANVIK-LAGNFMIACSLEMMGEA-FTMAEKNGISRQSIYE 207 (297)
T ss_dssp E--CHHHHHHHHHHHHTTCSE-EEECCSCTTHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHTTCCHHHHHH
T ss_pred c--chhHHHHHHHHHHHhhCC-eEEecCCccHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHH
Confidence 3 578999999999999964 2111 000000010 11122222222233333 3457789999997766
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-12 Score=125.66 Aligned_cols=199 Identities=16% Similarity=0.062 Sum_probs=126.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh-
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a- 190 (462)
+||+|||+|+||.++|++|++. |++|++++|+ ....+.+.+.|... ..++.|++++||+||+++|+..
T Consensus 10 ~~IgiIG~G~mG~~~A~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~~~~ 78 (306)
T 3l6d_A 10 FDVSVIGLGAMGTIMAQVLLKQ------GKRVAIWNRS-PGKAAALVAAGAHL----CESVKAALSASPATIFVLLDNHA 78 (306)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHTCEE----CSSHHHHHHHSSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEEeCCHHH
Confidence 8999999999999999999999 9998877665 44455556668775 6789999999999999999776
Q ss_pred HHHHHH--HHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 191 QADNYE--KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 191 ~~~vl~--eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
..+++. .+.+ +++|++|++++..... .+.+ .....++.|+.. |...++.. . +.+-..+++
T Consensus 79 ~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~--~~~~~g~~~vda-pv~g~~~~---~-------~~~~~~i~~- 143 (306)
T 3l6d_A 79 THEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQG--LVNQAGGHYVKG-MIVAYPRN---V-------GHRESHSIH- 143 (306)
T ss_dssp HHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHH--HHHHTTCEEEEE-EEESCGGG---T-------TCTTCEEEE-
T ss_pred HHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEec-ccccCccc---c-------cCCceEEEE-
Confidence 567776 5644 5799999888876432 2111 011245677763 54322210 1 122223333
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhcc-ccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYR-SDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~-~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
.. +.++++.++.+++.+|. .++....-++.. --++. .++.+.+.++.|+ +..+.+.|++++..+....+..
T Consensus 144 gg--~~~~~~~~~~ll~~lg~-~~~~~~~g~~~g~g~~~k--~~~~~~~~~~~Ea-~~la~~~Gld~~~~~~~~~~~~ 215 (306)
T 3l6d_A 144 TG--DREAFEQHRALLEGLAG-HTVFLPWDEALAFATVLH--AHAFAAMVTFFEA-VGAGDRFGLPVSKTARLLLETS 215 (306)
T ss_dssp EE--CHHHHHHHHHHHHTTCS-EEEECCHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHTTCCHHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHHhcC-CEEEecCCCCccHHHHHH--HHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHhh
Confidence 33 57899999999999976 333220001000 00121 2233333334443 4467899999999888655543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=123.41 Aligned_cols=177 Identities=12% Similarity=0.062 Sum_probs=123.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-------ceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-------~~~~d~~~~~~~eav~~ADvVi 183 (462)
|||+||| +|.||.+++..|.+. |++|++.+|+.++..+..+..| +. ..+..++++++|+||
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~Vi 69 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDASIT-----GMKNEDAAEACDIAV 69 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-----EEEHHHHHHHCSEEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccccccCCCC-----hhhHHHHHhcCCEEE
Confidence 5899999 999999999999998 8888887775443322232223 22 346778899999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEE-Eeccch--------------HHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL--------------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~-~a~G~~--------------i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
+++|+....++++++.+.++ +++|+ .+.|+. ...+.+ .+| +..|+.+||+.|+.......
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~v~~~~~~~~~~~~~~~ 144 (212)
T 1jay_A 70 LTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE---VLE-SEKVVSALHTIPAARFANLD 144 (212)
T ss_dssp ECSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHH---HHT-CSCEEECCTTCCHHHHHCTT
T ss_pred EeCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHH---hCC-CCeEEEEccchHHHHhhCcC
Confidence 99999998899998888774 77655 455665 344443 334 36899999998877643211
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHh-CCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHH
Q 012479 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (462)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~ai-G~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d 322 (462)
. .|-..+++... +.++.+.+..+++.+ |.. ++.. . -.+....+-++.|.++...++
T Consensus 145 ~-------~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~-~~~~---~-----~~~~a~~~k~~~~~~~~~~~~ 201 (212)
T 1jay_A 145 E-------KFDWDVPVCGD--DDESKKVVMSLISEIDGLR-PLDA---G-----PLSNSRLVESLTPLILNIMRF 201 (212)
T ss_dssp C-------CCCEEEEEEES--CHHHHHHHHHHHHHSTTEE-EEEE---E-----SGGGHHHHHTHHHHHHHHHHH
T ss_pred C-------CCCccEEEECC--cHHHHHHHHHHHHHcCCCC-ceec---c-----chhHHHHhcchHHHHHHHHHH
Confidence 1 23333344443 688999999999999 963 1111 1 135666788888988776663
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=136.72 Aligned_cols=194 Identities=12% Similarity=0.056 Sum_probs=124.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc---CceecCCCcCCHhhhhcc---CCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~eav~~---ADvViLa 185 (462)
++|+|||+|+||.++|++|.++ |++|++++|+.++..+...+. |+.. ..+++|++++ +|+||++
T Consensus 16 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~~r~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVil~ 85 (480)
T 2zyd_A 16 QQIGVVGMAVMGRNLALNIESR------GYTVSIFNRSREKTEEVIAENPGKKLVP----YYTVKEFVESLETPRRILLM 85 (480)
T ss_dssp BSEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHHHHHHHHHHSTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CeEEEEccHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHhhCCCCCeEE----eCCHHHHHhCCCCCCEEEEE
Confidence 7899999999999999999999 999888777654433333332 7764 5688898887 9999999
Q ss_pred ecc-hhHHHHHHHHHhcCCCCcEEEEec-cch--HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceE
Q 012479 186 ISD-AAQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (462)
Q Consensus 186 vpd-~a~~~vl~eI~~~Lk~gaiL~~a~-G~~--i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~a 261 (462)
||+ +...++++++.+++++|++|++++ |.. ...+.+ .....++.++ .+|...+... .. .|. +
T Consensus 86 Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~--~l~~~g~~~v-~~pv~gg~~~---a~-------~g~-~ 151 (480)
T 2zyd_A 86 VKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNR--ELSAEGFNFI-GTGVSGGEEG---AL-------KGP-S 151 (480)
T ss_dssp SCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEE-EEEEESHHHH---HH-------HCC-E
T ss_pred CCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHCCCCee-CCccccCHhH---Hh-------cCC-e
Confidence 999 577889999999999999887665 432 122222 1112356676 4576433331 12 245 4
Q ss_pred EEeeccCCCHHHHHHHHHHHHHhCCCc------ccccchhhhccccchhhhHhH-HhH-HHHHHHHHHHH---HHH-cCC
Q 012479 262 SFAVHQDVDGRATNVALGWSVALGSPF------TFATTLEQEYRSDIFGERGIL-LGA-VHGIVESLFRR---FTE-NGM 329 (462)
Q Consensus 262 liav~qd~tgea~e~a~al~~aiG~~~------viettf~~E~~~dlfgeqtvL-~G~-~paliea~~d~---~v~-~G~ 329 (462)
++ +.. +.++.+.++.+++.+|... +... .+. -.+...-+ .++ .-.+++++.|. +.+ .|+
T Consensus 152 i~-~gg--~~~~~~~v~~ll~~~g~~~~dGe~~v~~~---g~~---G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl 222 (480)
T 2zyd_A 152 IM-PGG--QKEAYELVAPILTKIAAVAEDGEPCVTYI---GAD---GAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNL 222 (480)
T ss_dssp EE-EES--CHHHHHHHHHHHHHHSCBCTTSCBSBCCC---BST---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EE-ecC--CHHHHHHHHHHHHHHhccccCCCceEEEE---CCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33 343 5789999999999999630 1111 010 01111101 111 11245555555 777 599
Q ss_pred CHHHHHHHH
Q 012479 330 NEDLAYKNT 338 (462)
Q Consensus 330 ~~e~A~~~~ 338 (462)
++++.....
T Consensus 223 ~~~~~~~l~ 231 (480)
T 2zyd_A 223 TNEELAQTF 231 (480)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999887654
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-12 Score=125.03 Aligned_cols=197 Identities=16% Similarity=0.200 Sum_probs=124.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc-hh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd-~a 190 (462)
+||+|||+|.||.+++.+|.+. |++|+++++. .+..+...+.|+.. ..+.+++++++|+||+++|+ ..
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~v~~~~~ 74 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRN-PEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 74 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred ceEEEECchHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 5899999999999999999998 8888766554 44455556668764 56888999999999999995 45
Q ss_pred HHHHH---HHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 191 QADNY---EKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 191 ~~~vl---~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
...++ +++.+.+++|++|++.+... ...+.+ .....++.++.. |..++... ... .+... ++
T Consensus 75 ~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~~~-pv~~~~~~---~~~------~~~~~-~~ 141 (299)
T 1vpd_A 75 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDA-PVSGGEPK---AID------GTLSV-MV 141 (299)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEEC-CEESHHHH---HHH------TCEEE-EE
T ss_pred HHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEEe-cCCCCHhH---Hhc------CCEEE-Ee
Confidence 56777 67889999999877665432 223322 111235666654 54333221 112 23444 33
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH-HhHHH-HHHHHHHHH---HHHcCCCHHHHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVH-GIVESLFRR---FTENGMNEDLAYKNTV 339 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL-~G~~p-aliea~~d~---~v~~G~~~e~A~~~~~ 339 (462)
.. +.+..+.+..+++.+|.. ++.+ .+.... ...-| .+... .++.++.|. +.+.|+++++++....
T Consensus 142 -~~--~~~~~~~~~~ll~~~g~~-~~~~---~~~~~~---~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 211 (299)
T 1vpd_A 142 -GG--DKAIFDKYYDLMKAMAGS-VVHT---GDIGAG---NVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIR 211 (299)
T ss_dssp -ES--CHHHHHHHHHHHHTTEEE-EEEE---ESTTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred -CC--CHHHHHHHHHHHHHHcCC-eEEe---CCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 678899999999999963 2211 111111 11111 22222 244444454 8899999998887655
Q ss_pred HHH
Q 012479 340 ECI 342 (462)
Q Consensus 340 e~i 342 (462)
++.
T Consensus 212 ~~~ 214 (299)
T 1vpd_A 212 GGL 214 (299)
T ss_dssp TST
T ss_pred ccC
Confidence 543
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.5e-12 Score=126.68 Aligned_cols=187 Identities=15% Similarity=0.043 Sum_probs=118.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCc------hhHHHHHHcCceecCCCcC-CHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS------RSFAEARAAGFTEENGTLG-DIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~------~s~~~A~~~G~~~~d~~~~-~~~eav~~ADvVi 183 (462)
+||+|||+|+||.++|++|.+. | ++|+++++... ...+.+.+.|+ . . ++.|++++||+||
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~-----~~s~~e~~~~aDvVi 92 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR------NAARLAAYDLRFNDPAASGALRARAAELGV-E-----PLDDVAGIACADVVL 92 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECGGGGCTTTHHHHHHHHHHTTC-E-----EESSGGGGGGCSEEE
T ss_pred CeEEEECccHHHHHHHHHHHHc------CCCeEEEEeCCCccccchHHHHHHHHHCCC-C-----CCCHHHHHhcCCEEE
Confidence 7999999999999999999999 9 89888776541 33445555666 2 4 7789999999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccC-CCchhhHHhhhcCccccCCCc
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGI 259 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pn-gpg~~vr~lf~~G~~~~G~Gv 259 (462)
+++|+....++++++.+.+++|++|++++++... .+.+ .....++.++- +|- +|... .. |-
T Consensus 93 ~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~--~l~~~g~~~~d-~pv~g~~~a-----~~-------g~ 157 (317)
T 4ezb_A 93 SLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAG--AIATGKGSFVE-GAVMARVPP-----YA-------EK 157 (317)
T ss_dssp ECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHH--HHHTSSCEEEE-EEECSCSTT-----TG-------GG
T ss_pred EecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-ccCCCCchh-----hc-------CC
Confidence 9999999999999999999999999988876432 2221 11123455543 232 22111 11 23
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCCcccccch-hhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHH
Q 012479 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (462)
Q Consensus 260 ~aliav~qd~tgea~e~a~al~~aiG~~~viettf-~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e 332 (462)
..+++...+ + +.++.+++.+|.. ++.+.- ...-..-.+...+.+ ....+++.-++..+.+.|++++
T Consensus 158 l~i~vgg~~----~-~~~~~ll~~~g~~-v~~~g~~~g~a~~~Kl~~N~~~-~~~~~~~~E~~~la~~~Gid~~ 224 (317)
T 4ezb_A 158 VPILVAGRR----A-VEVAERLNALGMN-LEAVGETPGQASSLKMIRSVMI-KGVEALLIEALSSAERAGVTER 224 (317)
T ss_dssp SEEEEESTT----H-HHHHHHHHTTTCE-EEEEESSTTHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred EEEEEeCCh----H-HHHHHHHHHhCCC-eEEeCCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHH
Confidence 333443332 2 7889999999963 332221 001111112223222 2333344444567788999984
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=124.78 Aligned_cols=193 Identities=12% Similarity=0.056 Sum_probs=123.0
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|+||+|||+|.||.+++.+|.+ |++|+++++...+ .+...+.|+.. .. ..++++++|+||+++|+..
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-------g~~V~~~~~~~~~-~~~~~~~g~~~----~~-~~~~~~~~D~vi~~v~~~~ 67 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-------RFPTLVWNRTFEK-ALRHQEEFGSE----AV-PLERVAEARVIFTCLPTTR 67 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-------TSCEEEECSSTHH-HHHHHHHHCCE----EC-CGGGGGGCSEEEECCSSHH
T ss_pred CCeEEEEcccHHHHHHHHHHhC-------CCeEEEEeCCHHH-HHHHHHCCCcc----cC-HHHHHhCCCEEEEeCCChH
Confidence 4789999999999999999863 5677776665443 44444456653 33 6788899999999999776
Q ss_pred -HHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 191 -QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 191 -~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
..++++++.+.+++|++|++.+... ...+.+ .....++.++.. |..+++. ... .|...+++ .
T Consensus 68 ~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~--~~~~~g~~~~~~-p~~~~~~---~~~-------~g~~~~~~-~ 133 (289)
T 2cvz_A 68 EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAE--RLREKGVTYLDA-PVSGGTS---GAE-------AGTLTVML-G 133 (289)
T ss_dssp HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEEEC-CEESHHH---HHH-------HTCEEEEE-E
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEEe-cCCCChh---HHh-------hCCeEEEE-C
Confidence 6678888999999999887665443 222222 111235678875 8654443 222 24555444 3
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHH---HHHcCCCHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRR---FTENGMNEDLAYKNTV 339 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~---~v~~G~~~e~A~~~~~ 339 (462)
. +.+..+.+..++ .+|.. ++... +. +....+..+.++ ++.++.|. +.+.|+++++++....
T Consensus 134 ~--~~~~~~~~~~ll-~~g~~-~~~~~---~~-----~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 201 (289)
T 2cvz_A 134 G--PEEAVERVRPFL-AYAKK-VVHVG---PV-----GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVIN 201 (289)
T ss_dssp S--CHHHHHHHGGGC-TTEEE-EEEEE---ST-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred C--CHHHHHHHHHHH-hhcCC-eEEcC---CC-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHH
Confidence 2 678889999999 99863 22221 11 111222222222 34555555 8899999988877655
Q ss_pred HHH
Q 012479 340 ECI 342 (462)
Q Consensus 340 e~i 342 (462)
++.
T Consensus 202 ~~~ 204 (289)
T 2cvz_A 202 ASS 204 (289)
T ss_dssp TST
T ss_pred ccC
Confidence 443
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-12 Score=125.15 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=103.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCceecC-------CCcC--CHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-------GTLG--DIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~d-------~~~~--~~~eav~~ADv 181 (462)
|||+|||+|+||.++|.+|.++ |++|++.+|. +.+..+...+.|..... .... ++.++++++|+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~ 74 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCE
Confidence 5899999999999999999999 9988877661 33445555555531000 0123 56788899999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec-cc------hHHHhhhcc-ccCCC-CccEEecccCCCchhhHHhhhcCc
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH-GF------LLGHLQSMG-LDFPK-NIGVIAVCPKGMGPSVRRLYVQGK 252 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~-G~------~i~~~~~~~-i~~p~-~v~VV~v~Pngpg~~vr~lf~~G~ 252 (462)
||+++|+....++++++.+ ++++++|++.. |+ ....+.+.. ..++. ..-.++.+|+.+.+.
T Consensus 75 vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~--------- 144 (335)
T 1txg_A 75 VLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV--------- 144 (335)
T ss_dssp EEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH---------
T ss_pred EEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH---------
Confidence 9999999999999999999 99999876654 87 222222200 01111 112556777664332
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 253 ~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
++|.+..+.+.. .+.+..+.+..++...|..
T Consensus 145 ---~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~ 175 (335)
T 1txg_A 145 ---AKRMPTTVVFSS-PSESSANKMKEIFETEYFG 175 (335)
T ss_dssp ---HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEE
T ss_pred ---HccCCcEEEEEe-CCHHHHHHHHHHhCCCcEE
Confidence 135644344443 3578889999999988853
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-12 Score=135.86 Aligned_cols=148 Identities=17% Similarity=0.054 Sum_probs=105.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----cCceecCCCcCCHhhhhcc---CCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETISG---SDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----~G~~~~d~~~~~~~eav~~---ADvVi 183 (462)
++|+|||+|+||.++|++|.++ |++|.+++|..++ .+...+ .|+.. ..+++|++++ +|+||
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~~~gi~~----~~s~~e~v~~l~~aDvVi 79 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH------GFTVCAYNRTQSK-VDHFLANEAKGKSIIG----ATSIEDFISKLKRPRKVM 79 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSSHH-HHHHHHTTTTTSSEEC----CSSHHHHHHTSCSSCEEE
T ss_pred CCEEEEeeHHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHcccccCCCeEE----eCCHHHHHhcCCCCCEEE
Confidence 7899999999999999999999 9999888776554 444444 47764 5688898887 99999
Q ss_pred Eeecc-hhHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCc
Q 012479 184 LLISD-AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (462)
Q Consensus 184 Lavpd-~a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv 259 (462)
++||+ +...++++++.+++++|++|++++.... ..+.+ .....++.++ .+|...+.. ... .|.
T Consensus 80 l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~--~l~~~g~~~v-~~pVsgg~~---~a~-------~G~ 146 (497)
T 2p4q_A 80 LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYE--ELKKKGILFV-GSGVSGGEE---GAR-------YGP 146 (497)
T ss_dssp ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEE-EEEEESHHH---HHH-------HCC
T ss_pred EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHH--HHHHcCCcee-CCCcccChh---Hhh-------cCC
Confidence 99999 4778899999999999999887764421 22222 1112356676 346332222 112 345
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 260 ~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.++ +.. +.++.+.++.+++.+|..
T Consensus 147 -~im-~gg--~~e~~~~v~~ll~~~g~~ 170 (497)
T 2p4q_A 147 -SLM-PGG--SEEAWPHIKNIFQSISAK 170 (497)
T ss_dssp -EEE-EEE--CGGGHHHHHHHHHHHSCE
T ss_pred -eEE-ecC--CHHHHHHHHHHHHHhcCc
Confidence 323 343 578899999999999963
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-13 Score=143.48 Aligned_cols=168 Identities=17% Similarity=0.115 Sum_probs=123.2
Q ss_pred eeecCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC
Q 012479 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (462)
Q Consensus 93 ~~~~~~~~f~~-~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (462)
-+|.|+|.... ....+.| ++|+|||+|+||.++|++|+.. |++|+++++.. +.+.+.+.|+.. .+
T Consensus 124 ~~~~g~w~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~--~~~~a~~~g~~~-----~~ 189 (529)
T 1ygy_A 124 SLREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYV--SPARAAQLGIEL-----LS 189 (529)
T ss_dssp HHHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTS--CHHHHHHHTCEE-----CC
T ss_pred HHHhCCCcccCcCccccCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCcEE-----cC
Confidence 45778996532 2367999 9999999999999999999988 98887665543 345577788874 48
Q ss_pred HhhhhccCCeEEEeecch-hHHHHHHH-HHhcCCCCcEEEEeccch-HH------HhhhccccCCCCccEEecccCCCch
Q 012479 172 IYETISGSDLVLLLISDA-AQADNYEK-IFSCMKPNSILGLSHGFL-LG------HLQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~-a~~~vl~e-I~~~Lk~gaiL~~a~G~~-i~------~~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
.++++++||+|++++|+. ....++.+ +.+.||+|++|++++-.. +. .+.+..+ -...++|+..||. +.
T Consensus 190 l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i-~ga~lDv~~~eP~-~~- 266 (529)
T 1ygy_A 190 LDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV-RAAGLDVFATEPC-TD- 266 (529)
T ss_dssp HHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSE-EEEEESSCSSSSC-SC-
T ss_pred HHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCc-cEEEEeeccCCCC-CC-
Confidence 899999999999999988 66777764 889999999988765321 11 1111000 0124678999995 32
Q ss_pred hhHHhhhcCccccCCCceEEEeeccC-CCHHHHHH-----HHHHHHHhCCC
Q 012479 243 SVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV-----ALGWSVALGSP 287 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~aliav~qd-~tgea~e~-----a~al~~aiG~~ 287 (462)
..+|. +-+++++||.. .+.++.+. +..++..++..
T Consensus 267 --~~L~~--------~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~ 307 (529)
T 1ygy_A 267 --SPLFE--------LAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGE 307 (529)
T ss_dssp --CGGGG--------CTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTC
T ss_pred --chHHh--------CCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 24565 47889999998 78888775 77888888864
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5e-12 Score=127.43 Aligned_cols=149 Identities=17% Similarity=0.136 Sum_probs=102.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC--------------ceecCCCcCCHhhhhc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETIS 177 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G--------------~~~~d~~~~~~~eav~ 177 (462)
+||+|||+|+||.++|.+|.++ |++|.+++|..+ ..+...+.| +.. ..++.++++
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 84 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEE-EVRLVNEKRENVLFLKGVQLASNITF----TSDVEKAYN 84 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTT------EEEEEEECSCHH-HHHHHHHHTBCTTTSTTCBCCTTEEE----ESCHHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHcCcccccccccccccceee----eCCHHHHHc
Confidence 4999999999999999999988 888887766533 344444333 221 357788899
Q ss_pred cCCeEEEeecchhHHHHHHH----HHhcCCC-CcEEEEec-cchHHHh---hhc-cccCCCCccEEecccCCCchhhHHh
Q 012479 178 GSDLVLLLISDAAQADNYEK----IFSCMKP-NSILGLSH-GFLLGHL---QSM-GLDFPKNIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~e----I~~~Lk~-gaiL~~a~-G~~i~~~---~~~-~i~~p~~v~VV~v~Pngpg~~vr~l 247 (462)
++|+||+++|+....+++++ |.+++++ +++|+++. |+..... .+. ...+|.....++.+|+.+...
T Consensus 85 ~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~---- 160 (366)
T 1evy_A 85 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEV---- 160 (366)
T ss_dssp TCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHH----
T ss_pred CCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHH----
Confidence 99999999999988999998 9999988 88766554 7744211 000 002232223567788775433
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHh
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL 284 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~ai 284 (462)
+ .|.+.++.+. ..+.+..+.+..++...
T Consensus 161 ~--------~g~~~~~~~~-~~~~~~~~~v~~ll~~~ 188 (366)
T 1evy_A 161 A--------TGVFTCVSIA-SADINVARRLQRIMSTG 188 (366)
T ss_dssp H--------TTCCEEEEEE-CSSHHHHHHHHHHHSCT
T ss_pred H--------hCCceEEEEe-cCCHHHHHHHHHHhcCC
Confidence 1 3555544433 34678889999999988
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-12 Score=127.50 Aligned_cols=185 Identities=13% Similarity=0.052 Sum_probs=117.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-----------ceecCCCcCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----------FTEENGTLGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-----------~~~~d~~~~~~~eav~~AD 180 (462)
+||+|||+|+||.++|.+|.++ |++|.++.|..++ .+...+.| +.. ..++++ ++++|
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~------G~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~----~~~~~~-~~~aD 82 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHEN------GEEVILWARRKEI-VDLINVSHTSPYVEESKITVRA----TNDLEE-IKKED 82 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHH-HHHHHHHSCBTTBTTCCCCSEE----ESCGGG-CCTTE
T ss_pred CcEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHhCCcccCCCCeeeEEE----eCCHHH-hcCCC
Confidence 7999999999999999999999 9999887776443 33334445 232 456778 88999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe-ccchHHHh---hhc-cccCCCCccEEecccCCCchhhHHhhhcCcccc
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHL---QSM-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEIN 255 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a-~G~~i~~~---~~~-~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~ 255 (462)
+||++||+++..++++++.+ ++++|+.+ .|+..... .+. ...++ ....++.+|+.+...
T Consensus 83 vVil~vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~~~------------ 146 (335)
T 1z82_A 83 ILVIAIPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAEEV------------ 146 (335)
T ss_dssp EEEECSCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHHHH------------
T ss_pred EEEEECCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHHHH------------
Confidence 99999999988899988766 77766544 47643211 000 00123 224678999887654
Q ss_pred CCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhh-------------hHh----------HHhH
Q 012479 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGE-------------RGI----------LLGA 312 (462)
Q Consensus 256 G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfge-------------qtv----------L~G~ 312 (462)
+.|.+..+....+ + .+.+..++...|.. +. ...|+.+. .++ +...
T Consensus 147 ~~g~~~~~~~g~~-~---~~~~~~ll~~~g~~-~~-------~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~ 214 (335)
T 1z82_A 147 AKKLPTAVTLAGE-N---SKELQKRISTEYFR-VY-------TCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAAL 214 (335)
T ss_dssp HTTCCEEEEEEET-T---HHHHHHHHCCSSEE-EE-------EESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hCCCceEEEEEeh-h---HHHHHHHhCCCCEE-EE-------ecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHH
Confidence 2455433333332 1 66778888887753 11 11222211 011 1122
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 313 VHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 313 ~paliea~~d~~v~~G~~~e~A~~ 336 (462)
...++..+.+.+.+.|++++..+.
T Consensus 215 ~~~~~~E~~~la~a~G~~~~~~~~ 238 (335)
T 1z82_A 215 ETRGIYEIARFGMFFGADQKTFMG 238 (335)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCChhhhcc
Confidence 334667777788889999876544
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.37 E-value=9.3e-12 Score=124.15 Aligned_cols=191 Identities=17% Similarity=0.083 Sum_probs=124.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch-h
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~-a 190 (462)
+||+|||+|.||.++|++|.+. |++|++++|. ....+...+.|+.. ..+.+|++++||+||+++|+. .
T Consensus 32 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~l~~~g~~~----~~~~~e~~~~aDvVi~~vp~~~~ 100 (320)
T 4dll_A 32 RKITFLGTGSMGLPMARRLCEA------GYALQVWNRT-PARAASLAALGATI----HEQARAAARDADIVVSMLENGAV 100 (320)
T ss_dssp SEEEEECCTTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCEE----ESSHHHHHTTCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCeEEEEcCC-HHHHHHHHHCCCEe----eCCHHHHHhcCCEEEEECCCHHH
Confidence 8999999999999999999999 9998877665 44455666668775 578999999999999999964 5
Q ss_pred HHHHHH--HHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 191 QADNYE--KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 191 ~~~vl~--eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
..+++. ++.+.+++|++|++++..... .+.+ .....++.++. +|...+.. .-. .|...+++
T Consensus 101 ~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~--~~~~~g~~~~~-~pv~g~~~---~a~-------~g~l~i~~- 166 (320)
T 4dll_A 101 VQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAA--RLGALGIAHLD-TPVSGGTV---GAE-------QGTLVIMA- 166 (320)
T ss_dssp HHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEECHHH---HHH-------HTCEEEEE-
T ss_pred HHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHH--HHHHcCCEEEe-CCCcCCHh---HHh-------cCCeeEEe-
Confidence 567777 788999999999888776432 1111 11123566665 36432222 111 23434333
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH-HhHH----HHHHHHHHHHHHHcCCCHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAV----HGIVESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL-~G~~----paliea~~d~~v~~G~~~e~A~~~ 337 (462)
.. +.++.+.++.+++.+ . .++... +. --++..-+ .+.. -+++.-++..+.+.|++++..+..
T Consensus 167 gg--~~~~~~~~~~ll~~~-~-~~~~~g---~~---g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~ 233 (320)
T 4dll_A 167 GG--KPADFERSLPLLKVF-G-RATHVG---PH---GSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEA 233 (320)
T ss_dssp ES--CHHHHHHHHHHHHHH-E-EEEEEE---ST---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHhc-C-CEEEeC---Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33 578999999999999 4 333221 11 01111111 2222 223344445567899999877663
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.9e-12 Score=119.97 Aligned_cols=184 Identities=16% Similarity=0.117 Sum_probs=112.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|||+|||+|+||.++|.+|.+. |++|++.++. ..+..+...+.|+. .+.+++++++|+||+++|+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~------g~~V~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHC------CCeEEEeCCccCHHHHHHHHHCCCc------CCHHHHHhcCCEEEEECCCHH
Confidence 5899999999999999999998 9888775432 33344555555664 366788999999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeecc
Q 012479 191 QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q 267 (462)
+.+.+.++.+.+++ +|++.++... ..+.+ .+++.- ++. +|...++. ... .|.+ +++..+
T Consensus 69 ~~~~~~~~~~~~~~--~vi~~s~~~~~~~~~l~~---~~~~~g-~~~-~~v~~~~~---~~~-------~g~~-~~~~g~ 130 (264)
T 1i36_A 69 ALGAARRAGRHVRG--IYVDINNISPETVRMASS---LIEKGG-FVD-AAIMGSVR---RKG-------ADIR-IIASGR 130 (264)
T ss_dssp HHHHHHHHHTTCCS--EEEECSCCCHHHHHHHHH---HCSSSE-EEE-EEECSCHH---HHG-------GGCE-EEEEST
T ss_pred HHHHHHHHHHhcCc--EEEEccCCCHHHHHHHHH---HHhhCC-eee-eeeeCCcc---ccc-------cCCe-EEecCC
Confidence 87777888888877 7777776642 23333 233321 332 34221111 111 3566 444333
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH----HHHHHHHHH---HHHcCCCHHHHHHHHHH
Q 012479 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH----GIVESLFRR---FTENGMNEDLAYKNTVE 340 (462)
Q Consensus 268 d~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p----aliea~~d~---~v~~G~~~e~A~~~~~e 340 (462)
+ . +.+.. ++.+|.. ++.+ .+. .+....+..+.+ .++.++.|. +++.|++++ ++....+
T Consensus 131 ~--~---~~~~~-l~~~g~~-~~~~---~~~----~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~ 195 (264)
T 1i36_A 131 D--A---EEFMK-LNRYGLN-IEVR---GRE----PGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEY 195 (264)
T ss_dssp T--H---HHHHG-GGGGTCE-EEEC---SSS----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHT
T ss_pred c--H---HHhhh-HHHcCCe-eEEC---CCC----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHH
Confidence 2 1 66777 8999863 2222 111 223333222222 234555555 899999986 6654444
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-11 Score=124.26 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=105.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec---C-------CCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---N-------GTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~---d-------~~~~~~~eav~~ADv 181 (462)
+||+|||.|+||.++|..|.++ |++|.++.|.. +..+...+.|.... + ....++++++++||+
T Consensus 30 mkI~VIGaG~mG~alA~~La~~------G~~V~l~~r~~-~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARK------GQKVRLWSYES-DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTT------TCCEEEECSCH-HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 7999999999999999999999 99988777653 33444444442100 0 013578889999999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEE-EEeccchHH------HhhhccccCCCCccEEecccCCCchhhHHhhhcCccc
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLLG------HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~i~------~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~ 254 (462)
||+++|++...+++++|.++++++++| +.+.|+... .+.+ .+|...-.+...|+.....
T Consensus 103 VilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~---~l~~~~~~vlsgP~~a~ev----------- 168 (356)
T 3k96_A 103 ILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVAT---ELGQVPMAVISGPSLATEV----------- 168 (356)
T ss_dssp EEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHH---HHCSCCEEEEESSCCHHHH-----------
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHH---HcCCCCEEEEECccHHHHH-----------
Confidence 999999999999999999999999865 456677542 2322 2232223466677654332
Q ss_pred cCCCceEEEeeccCCCHHHHHHHHHHHHHhCC
Q 012479 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 255 ~G~Gv~aliav~qd~tgea~e~a~al~~aiG~ 286 (462)
++|.+..+++.. .+.+..+.+..++...|.
T Consensus 169 -~~g~pt~~via~-~~~~~~~~v~~lf~~~~~ 198 (356)
T 3k96_A 169 -AANLPTAVSLAS-NNSQFSKDLIERLHGQRF 198 (356)
T ss_dssp -HTTCCEEEEEEE-SCHHHHHHHHHHHCCSSE
T ss_pred -HcCCCeEEEEec-CCHHHHHHHHHHhCCCCe
Confidence 145666454443 356777888888887775
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=121.00 Aligned_cols=196 Identities=15% Similarity=0.113 Sum_probs=123.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh-
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA- 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a- 190 (462)
+||+|||+|.||.+++.+|.+. |++|+++++. .+..+...+.|+.. ..+.+++++++|+||+++|+..
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~~ 73 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE------GVTVYAFDLM-EANVAAVVAQGAQA----CENNQKVAAASDIIFTSLPNAGI 73 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 7899999999999999999998 8888766554 33445555557764 5688899999999999998554
Q ss_pred HHHHHH---HHHhcCCCCcEEEEe-ccc--hHHHhhhccccCC-CCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 191 QADNYE---KIFSCMKPNSILGLS-HGF--LLGHLQSMGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 191 ~~~vl~---eI~~~Lk~gaiL~~a-~G~--~i~~~~~~~i~~p-~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
...++. ++.+.+++|++|++. .|. ....+.+ .++ .++.++. +|..++.. ... .|...++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~---~~~~~g~~~~~-~p~~~~~~---~a~-------~g~~~~~ 139 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAK---VAAEKGIDYVD-APVSGGTK---GAE-------AGTLTIM 139 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHH---HHHHTTCEEEE-CCEESHHH---HHH-------HTCEEEE
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEE-ccCCCCHH---HHH-------cCCeEEE
Confidence 567775 788999999987654 444 2333332 122 3566664 57554432 222 2454444
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHh-HHhHHHH-HHHHHHH---HHHHcCCCHHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGI-LLGAVHG-IVESLFR---RFTENGMNEDLAYKNT 338 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtv-L~G~~pa-liea~~d---~~v~~G~~~e~A~~~~ 338 (462)
+ .. +.+..+.+..+++.+|.. ++... +... +...- +.+...+ ++.++.| .+.+.|+++++++...
T Consensus 140 ~-~g--~~~~~~~v~~ll~~~g~~-~~~~~---~~g~---~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 209 (301)
T 3cky_A 140 V-GA--SEAVFEKIQPVLSVIGKD-IYHVG---DTGA---GDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEII 209 (301)
T ss_dssp E-ES--CHHHHHHHHHHHHHHEEE-EEEEE---STTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred E-CC--CHHHHHHHHHHHHHhcCC-EEEeC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 33 678899999999999964 11111 1111 01100 1122211 2223333 3889999998877655
Q ss_pred HHHH
Q 012479 339 VECI 342 (462)
Q Consensus 339 ~e~i 342 (462)
.++.
T Consensus 210 ~~~~ 213 (301)
T 3cky_A 210 GKSS 213 (301)
T ss_dssp HTST
T ss_pred HcCC
Confidence 4443
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-11 Score=120.28 Aligned_cols=148 Identities=9% Similarity=0.028 Sum_probs=103.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC-------cEEEEEecCCch----hHHHHHHcC--------------ceecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAAG--------------FTEEN 166 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G-------~~Vivg~r~~~~----s~~~A~~~G--------------~~~~d 166 (462)
+||+|||+|+||.++|.+|.++ | ++|.+++|.... ..+...+.+ +..
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~------g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 80 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGN------AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-- 80 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE--
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE--
Confidence 6999999999999999999998 8 788877765440 233333221 221
Q ss_pred CCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEE-EeccchH--------H-HhhhccccCCCCccEEecc
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL--------G-HLQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~-~a~G~~i--------~-~~~~~~i~~p~~v~VV~v~ 236 (462)
..+++++++++|+||+++|++...+++++|.++++++++|+ .+.|+.+ . .+.+ .++.+ ..++.+
T Consensus 81 --~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~---~~~~~-~~v~~g 154 (354)
T 1x0v_A 81 --VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGE---RLGIP-MSVLMG 154 (354)
T ss_dssp --ESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHH---HHTCC-EEEEEC
T ss_pred --EcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHH---HcCCC-EEEEEC
Confidence 35678889999999999999999999999999999998765 4456642 1 1111 12311 357788
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCC
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~ 286 (462)
|+.+... + .|.+..+.+. ..+.+..+.+..++...|.
T Consensus 155 p~~a~~v----~--------~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~ 191 (354)
T 1x0v_A 155 ANIASEV----A--------DEKFCETTIG-CKDPAQGQLLKELMQTPNF 191 (354)
T ss_dssp SCCHHHH----H--------TTCCEEEEEE-CSSHHHHHHHHHHHCBTTE
T ss_pred CCcHHHH----H--------hcCCceEEEE-ECCHHHHHHHHHHhCCCCE
Confidence 8876543 1 3565444443 3457888889999998885
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=127.81 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=104.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc---CceecCCCcCCHhhhhcc---CCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISG---SDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~eav~~---ADvViLa 185 (462)
++|+|||+|+||.++|++|.+. |++|.+++|..++..+...+. |+.. ..+++|++++ +|+||++
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~------G~~V~v~dr~~~~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVila 75 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR------GYTVAIYNRTTSKTEEVFKEHQDKNLVF----TKTLEEFVGSLEKPRRIMLM 75 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSCEEE----CSSHHHHHHTBCSSCEEEEC
T ss_pred CcEEEEeeHHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHhCcCCCeEE----eCCHHHHHhhccCCCEEEEE
Confidence 6899999999999999999998 998887776644433333333 6664 5688898876 9999999
Q ss_pred ecch-hHHHHHHHHHhcCCCCcEEEEec-cch--HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceE
Q 012479 186 ISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (462)
Q Consensus 186 vpd~-a~~~vl~eI~~~Lk~gaiL~~a~-G~~--i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~a 261 (462)
||+. ...++++++.+++++|++|++.+ |.. ...+.+ .....++.++ .+|...+... -. .|...
T Consensus 76 vp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~--~l~~~g~~~v-~~pv~gg~~~---a~-------~g~~i 142 (474)
T 2iz1_A 76 VQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNA--ELADSGINFI-GTGVSGGEKG---AL-------LGPSM 142 (474)
T ss_dssp CCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HTTTSSCEEE-EEEECSHHHH---HH-------HCCCE
T ss_pred ccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCeEE-CCCCCCChhh---hc-------cCCeE
Confidence 9995 66789999999999999887665 432 222322 1212356666 4576443321 12 24432
Q ss_pred EEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 262 liav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+ +.. +.++.+.+..+++.+|..
T Consensus 143 -~-~gg--~~~~~~~v~~ll~~~g~~ 164 (474)
T 2iz1_A 143 -M-PGG--QKEAYDLVAPIFEQIAAK 164 (474)
T ss_dssp -E-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred -E-ecC--CHHHHHHHHHHHHHHhcc
Confidence 3 333 678999999999999964
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-11 Score=122.28 Aligned_cols=149 Identities=11% Similarity=0.005 Sum_probs=103.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCC-------cEEEEEecCCc----hhHHHHHHc--------------Cceec
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGS----RSFAEARAA--------------GFTEE 165 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-------~~Vivg~r~~~----~s~~~A~~~--------------G~~~~ 165 (462)
++||+|||+|+||.++|.+|.++ | ++|+++.|... +..+...+. ++..
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~------G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~- 93 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTN------AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA- 93 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHH------HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE-
T ss_pred CCEEEEECcCHHHHHHHHHHHHc------CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE-
Confidence 36899999999999999999988 7 78888777544 023332222 2222
Q ss_pred CCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHh----cCCCCcEEEEec-cchHH---------HhhhccccCCCCcc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS----CMKPNSILGLSH-GFLLG---------HLQSMGLDFPKNIG 231 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~----~Lk~gaiL~~a~-G~~i~---------~~~~~~i~~p~~v~ 231 (462)
+.++.++++++|+||++||++...+++++|.+ +++++++|+.+. |+... .+.+ .++.+ -
T Consensus 94 ---~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~---~~~~~-~ 166 (375)
T 1yj8_A 94 ---HSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISD---FLNIP-C 166 (375)
T ss_dssp ---ESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHH---HSSSC-E
T ss_pred ---ECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHH---HcCCC-E
Confidence 35677889999999999999999999999999 999999765444 76431 1111 12322 3
Q ss_pred EEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCC
Q 012479 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 232 VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~ 286 (462)
.++.+|+.+... +.|.+..+.+.. .+.+..+.+..++...|.
T Consensus 167 ~v~~gp~~a~~v------------~~g~~~~~~~~~-~~~~~~~~v~~ll~~~g~ 208 (375)
T 1yj8_A 167 SALSGANIAMDV------------AMENFSEATIGG-NDKDSLVIWQRVFDLPYF 208 (375)
T ss_dssp EEEECSCCHHHH------------HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTE
T ss_pred EEEeCCchHHHH------------HhCCCeEEEEec-CCHHHHHHHHHHhCCCCe
Confidence 567788775433 135665444333 467788889999998885
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-11 Score=124.80 Aligned_cols=153 Identities=16% Similarity=0.091 Sum_probs=108.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccC---Ce
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS---DL 181 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~A---Dv 181 (462)
+..+++ +||+|||+|+||.++|++|.+. |++|++++|. ....+.+.+.|+.. ..+++|+++++ |+
T Consensus 17 ~~Mm~~-mkIgiIGlG~mG~~~A~~L~~~------G~~V~v~dr~-~~~~~~l~~~g~~~----~~s~~e~~~~a~~~Dv 84 (358)
T 4e21_A 17 NLYFQS-MQIGMIGLGRMGADMVRRLRKG------GHECVVYDLN-VNAVQALEREGIAG----ARSIEEFCAKLVKPRV 84 (358)
T ss_dssp -----C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCBC----CSSHHHHHHHSCSSCE
T ss_pred hhhhcC-CEEEEECchHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHCCCEE----eCCHHHHHhcCCCCCE
Confidence 344566 8999999999999999999999 9998877665 44456666678774 57899999999 99
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCC
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~G 258 (462)
||+++|+....++++++.+.+++|++|++.+.... ..+.+ .....++.++. +|-.-+.. .-. .|
T Consensus 85 Vi~~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~--~l~~~g~~~vd-apVsGg~~---~a~-------~G 151 (358)
T 4e21_A 85 VWLMVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRAD--QMRAQGITYVD-VGTSGGIF---GLE-------RG 151 (358)
T ss_dssp EEECSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHH--HHHTTTCEEEE-EEEECGGG---HHH-------HC
T ss_pred EEEeCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHH--HHHHCCCEEEe-CCCCCCHH---HHh-------cC
Confidence 99999999778899999999999999998876542 11111 12234666765 35322221 111 24
Q ss_pred ceEEEeeccCCCHHHHHHHHHHHHHhCC
Q 012479 259 INSSFAVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 259 v~aliav~qd~tgea~e~a~al~~aiG~ 286 (462)
. + +.+.. +.++++.++.+++.+|.
T Consensus 152 ~-~-im~GG--~~~a~~~~~~ll~~lg~ 175 (358)
T 4e21_A 152 Y-C-LMIGG--EKQAVERLDPVFRTLAP 175 (358)
T ss_dssp C-E-EEEES--CHHHHHHTHHHHHHHSC
T ss_pred C-e-eeecC--CHHHHHHHHHHHHHhcc
Confidence 4 4 33444 57899999999999994
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.6e-12 Score=120.86 Aligned_cols=195 Identities=11% Similarity=0.064 Sum_probs=122.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
++||+|||+|.||.++|.+|.+. |++|++++ + ....+...+.|+.. ..+.+++++++|+||+++|+..
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~-~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~ 70 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARA------GHQLHVTT-I-GPVADELLSLGAVN----VETARQVTEFADIIFIMVPDTP 70 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHT------TCEEEECC-S-SCCCHHHHTTTCBC----CSSHHHHHHTCSEEEECCSSHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCEEEEEc-C-HHHHHHHHHcCCcc----cCCHHHHHhcCCEEEEECCCHH
Confidence 47999999999999999999998 88887665 4 33344455557764 5678899999999999998776
Q ss_pred -HHHHHH---HHHhcCCCCcEEEEeccch---HHHhhhccccCC-CCccEEecccCCCchhhHHhhhcCccccCCCceEE
Q 012479 191 -QADNYE---KIFSCMKPNSILGLSHGFL---LGHLQSMGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (462)
Q Consensus 191 -~~~vl~---eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p-~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~al 262 (462)
...++. ++.+.+++|++|++.+... ...+.+ .++ .++.++. +|...+.. ... .|...+
T Consensus 71 ~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~~-~p~~~~~~---~a~-------~g~~~~ 136 (295)
T 1yb4_A 71 QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQ---RVNEMGADYLD-APVSGGEI---GAR-------EGTLSI 136 (295)
T ss_dssp HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHH---HHHTTTEEEEE-CCEESHHH---HHH-------HTCEEE
T ss_pred HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEE-ccCCCCHH---HHH-------cCCeEE
Confidence 467877 7888999999877655432 222322 112 2455552 35432221 122 245443
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhH-hHHhHHHH-HHHHHHHH---HHHcCCCHHHHHHH
Q 012479 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG-ILLGAVHG-IVESLFRR---FTENGMNEDLAYKN 337 (462)
Q Consensus 263 iav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqt-vL~G~~pa-liea~~d~---~v~~G~~~e~A~~~ 337 (462)
++ .. +.+..+.+..+++.+|.. ++.. .+.... ... .+.+...+ ++.++.|. +.+.|++++.++..
T Consensus 137 ~~-~~--~~~~~~~~~~ll~~~g~~-~~~~---~~~~~~---~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~ 206 (295)
T 1yb4_A 137 MV-GG--EQKVFDRVKPLFDILGKN-ITLV---GGNGDG---QTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQA 206 (295)
T ss_dssp EE-ES--CHHHHHHHHHHHHHHEEE-EEEE---ESTTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred EE-CC--CHHHHHHHHHHHHHhcCC-EEEe---CCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 44 33 678899999999999963 2211 111111 111 11232222 33444444 88999999887775
Q ss_pred HHHH
Q 012479 338 TVEC 341 (462)
Q Consensus 338 ~~e~ 341 (462)
..++
T Consensus 207 ~~~~ 210 (295)
T 1yb4_A 207 LMGG 210 (295)
T ss_dssp HTSS
T ss_pred HHcC
Confidence 5443
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-11 Score=131.87 Aligned_cols=208 Identities=11% Similarity=0.065 Sum_probs=135.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCc-------------eecC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGF-------------TEEN 166 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~-------------~~~d 166 (462)
++||+|||+|+||.++|.+|.++ |++|++.+++.+ ..+.+ .+.|. ..
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-- 384 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK------GTPILMKDINEH-GIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP-- 384 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSHH-HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE--
T ss_pred CCEEEEECCChhhHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE--
Confidence 58999999999999999999999 999887766533 23332 22342 21
Q ss_pred CCcCCHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchh
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
..++ +++++||+||+++|+... ..++.++.++++++++|+ .++++.+..+.+ .+...-+|+..||..|.+.
T Consensus 385 --~~d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~~~~~ig~hf~~P~~~ 458 (715)
T 1wdk_A 385 --TLSY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM 458 (715)
T ss_dssp --ESSS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT
T ss_pred --ECCH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHH---HhcCccceEEEEccCCccc
Confidence 3455 788999999999997763 468889999999999875 566777765543 2223347999999887654
Q ss_pred hHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHH
Q 012479 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRR 323 (462)
Q Consensus 244 vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~ 323 (462)
+-...+.++...+++.++.+..+++.+|... +... +. .-|-.--++. +.+.|++ .
T Consensus 459 --------------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~-v~v~---d~--~Gfi~Nril~---~~~~Ea~--~ 513 (715)
T 1wdk_A 459 --------------MPLVEVIRGEKSSDLAVATTVAYAKKMGKNP-IVVN---DC--PGFLVNRVLF---PYFGGFA--K 513 (715)
T ss_dssp --------------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEE-EEEE---SC--TTTTHHHHHH---HHHHHHH--H
T ss_pred --------------CceEEEEECCCCCHHHHHHHHHHHHHhCCEe-EEEc---CC--CChhhhHHHH---HHHHHHH--H
Confidence 1223355677789999999999999999642 2111 11 1221111221 2345552 3
Q ss_pred HHHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHH
Q 012479 324 FTENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYN 360 (462)
Q Consensus 324 ~v~~G~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~~ 360 (462)
+++.|+++++-.... ... .| --.++-..|++..+.
T Consensus 514 l~~~G~~~~~id~~~-~~~G~p~G-p~~l~D~vGld~~~~ 551 (715)
T 1wdk_A 514 LVSAGVDFVRIDKVM-EKFGWPMG-PAYLMDVVGIDTGHH 551 (715)
T ss_dssp HHHTTCCHHHHHHHH-HHHTCSSC-HHHHHHHHCHHHHHH
T ss_pred HHHCCCCHHHHHHHH-HHcCCCCC-HHHHHHHhhHHHHHH
Confidence 556699998766543 221 13 245555566654443
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.8e-12 Score=128.57 Aligned_cols=160 Identities=15% Similarity=0.083 Sum_probs=112.3
Q ss_pred eeecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 012479 93 IVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (462)
Q Consensus 93 ~~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (462)
-+|+|+|.... ...+.| ++|||||+|+||.++|+.|+.. |.+|+++++...+ ..+.+.|+.. .+.
T Consensus 126 ~~~~g~w~~~~-~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~-----~~l 190 (313)
T 2ekl_A 126 LAKSGIFKKIE-GLELAG-KTIGIVGFGRIGTKVGIIANAM------GMKVLAYDILDIR--EKAEKINAKA-----VSL 190 (313)
T ss_dssp HHHTTCCCCCC-CCCCTT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCEE-----CCH
T ss_pred HHHcCCCCCCC-CCCCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCcch--hHHHhcCcee-----cCH
Confidence 45778896333 368999 9999999999999999999988 9998776665433 3466778763 488
Q ss_pred hhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEeccchH-------HHhhhccccCCCCccEEecccCCCchh
Q 012479 173 YETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~-~~vl-~eI~~~Lk~gaiL~~a~G~~i-------~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
++++++||+|++++|.... ..++ ++..+.||+|++|+.++--.+ ..+.+..+ -....||+..+|.. .+.
T Consensus 191 ~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i-~ga~lDv~~~eP~~-~~~ 268 (313)
T 2ekl_A 191 EELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKV-YAYATDVFWNEPPK-EEW 268 (313)
T ss_dssp HHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCE-EEEEESCCSSSSCC-SHH
T ss_pred HHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCC-cEEEEecCCCCCCC-Ccc
Confidence 9999999999999997653 4455 467788999998887654322 11111111 11246889999954 443
Q ss_pred hHHhhhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 012479 244 VRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (462)
Q Consensus 244 vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a 277 (462)
...+|. .-+++++||. ..|.+..+.+
T Consensus 269 ~~~L~~--------~~nviltPH~~~~t~~~~~~~ 295 (313)
T 2ekl_A 269 ELELLK--------HERVIVTTHIGAQTKEAQKRV 295 (313)
T ss_dssp HHHHHH--------STTEEECCSCTTCSHHHHHHH
T ss_pred cchHhh--------CCCEEECCccCcCcHHHHHHH
Confidence 446776 3688999997 4455554443
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-12 Score=123.86 Aligned_cols=165 Identities=16% Similarity=0.109 Sum_probs=103.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHH-cCceecCCC---------cCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA-AGFTEENGT---------LGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~-~G~~~~d~~---------~~~~~eav~~AD 180 (462)
|||+|||+|+||.++|.+|.++.. ...| ++|+++.| ++..+...+ .|+...+.. ..+..+.++++|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~-~~~g~~~V~~~~r--~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAA-ATDGLLEVSWIAR--GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVD 85 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHH-HTTSSEEEEEECC--HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCcc-ccCCCCCEEEEEc--HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCC
Confidence 589999999999999999986400 0003 67877766 344555555 687642100 013345678999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEE-EeccchH-HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCC
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~-~a~G~~i-~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~G 258 (462)
+||+++|+....++++++.++++++++|+ ...|+.. ..+.+ .+|+. .+++.+|+.+........... .+.|
T Consensus 86 ~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~---~l~~~-~v~~g~~~~~a~~~~pg~~~~---~~~g 158 (317)
T 2qyt_A 86 YILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRT---YLPDT-VVWKGCVYISARKSAPGLITL---EADR 158 (317)
T ss_dssp EEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTT---TSCTT-TBCEEEEEEEEEEEETTEEEE---EEEE
T ss_pred EEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHH---HCCCC-cEEEEEEEEEEEEcCCCEEEE---cCCC
Confidence 99999999999999999999998888654 5678765 34443 34443 567777764433210000000 0234
Q ss_pred ceEEEeec-cCCCHHHHHHHHHHHHHhCCC
Q 012479 259 INSSFAVH-QDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 259 v~aliav~-qd~tgea~e~a~al~~aiG~~ 287 (462)
...+++.. ...+.+.. .+..++...|..
T Consensus 159 ~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~ 187 (317)
T 2qyt_A 159 ELFYFGSGLPEQTDDEV-RLAELLTAAGIR 187 (317)
T ss_dssp EEEEEECCSSSCCHHHH-HHHHHHHHTTCC
T ss_pred ceEEEcCCCCCCcCHHH-HHHHHHHHCCCC
Confidence 33334433 33445666 788999999964
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=124.02 Aligned_cols=159 Identities=18% Similarity=0.079 Sum_probs=111.1
Q ss_pred eeecCcccc-cccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC
Q 012479 93 IVRGGRDLF-NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (462)
Q Consensus 93 ~~~~~~~~f-~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (462)
-+|+|+|.. ......+.| ++|||||+|+||.++|+.|+.. |.+|+++++...+ +.+.+.|+. ..+
T Consensus 124 ~~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~-----~~~ 189 (307)
T 1wwk_A 124 KMREGVWAKKEAMGIELEG-KTIGIIGFGRIGYQVAKIANAL------GMNILLYDPYPNE--ERAKEVNGK-----FVD 189 (307)
T ss_dssp HHTTTCCCTTTCCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCE-----ECC
T ss_pred HHHcCCCCccCcCCcccCC-ceEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHhhcCcc-----ccC
Confidence 356788963 122468999 9999999999999999999988 9998776665433 456677876 347
Q ss_pred HhhhhccCCeEEEeecchh-HHHHH-HHHHhcCCCCcEEEEeccchH-------HHhhhccccCCCCccEEecccCCCch
Q 012479 172 IYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a-~~~vl-~eI~~~Lk~gaiL~~a~G~~i-------~~~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
.++++++||+|++++|... ...++ ++..+.||+|++|+.++.-.+ ..+.+.. ......+|+..+|.-+.+
T Consensus 190 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~-i~ga~lDv~~~eP~~~~~ 268 (307)
T 1wwk_A 190 LETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGW-IAGAGLDVFEEEPLPKDH 268 (307)
T ss_dssp HHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTS-SSEEEESCCSSSSCCTTC
T ss_pred HHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCC-CcEEEEecCCCCCCCCCC
Confidence 8999999999999999765 34555 367788999999886654321 1222211 112356788888853332
Q ss_pred hhHHhhhcCccccCCCceEEEeeccC-CCHHHHHHH
Q 012479 243 SVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~aliav~qd-~tgea~e~a 277 (462)
.+|. .-+++++||.. .|.++.+.+
T Consensus 269 ---~L~~--------~~nviltPh~~~~t~~~~~~~ 293 (307)
T 1wwk_A 269 ---PLTK--------FDNVVLTPHIGASTVEAQERA 293 (307)
T ss_dssp ---GGGG--------CTTEEECSSCTTCBHHHHHHH
T ss_pred ---hHHh--------CCCEEECCccccCcHHHHHHH
Confidence 4565 46899999973 455554443
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.7e-11 Score=126.01 Aligned_cols=149 Identities=16% Similarity=0.109 Sum_probs=103.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-------ceecCCCcCCHhhhhcc---CCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISG---SDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-------~~~~d~~~~~~~eav~~---ADv 181 (462)
|+|+|||+|+||.++|++|.+. |++|.+++|..++..+...+.| +.. ..+++|++++ +|+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~----~~~~~e~v~~l~~aDv 71 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKA----FETMEAFAASLKKPRK 71 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE----CSCHHHHHHHBCSSCE
T ss_pred CEEEEEChHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEE----ECCHHHHHhcccCCCE
Confidence 5899999999999999999999 9998887776444444444446 443 5688888874 999
Q ss_pred EEEeecch-hHHHHHHHHHhcCCCCcEEEEec-cch--HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCC
Q 012479 182 VLLLISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGA 257 (462)
Q Consensus 182 ViLavpd~-a~~~vl~eI~~~Lk~gaiL~~a~-G~~--i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~ 257 (462)
||++||+. ...++++++.+++++|++|++.+ |.. ...+.+ .....++.++. +|...+.. .-. .
T Consensus 72 VilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~--~l~~~g~~~v~-~pv~gg~~---~a~-------~ 138 (478)
T 1pgj_A 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ--QLEAAGLRFLG-MGISGGEE---GAR-------K 138 (478)
T ss_dssp EEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH--HHHTTTCEEEE-EEEESHHH---HHH-------H
T ss_pred EEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHH--HHHHCCCeEEE-eeccCCHH---HHh-------c
Confidence 99999995 67889999999999999877654 442 222222 11123566664 46543332 112 2
Q ss_pred CceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 258 GINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 258 Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
|. .++ +.. +.++.+.+..+++.+|..
T Consensus 139 g~-~i~-~gg--~~~~~~~v~~ll~~~g~~ 164 (478)
T 1pgj_A 139 GP-AFF-PGG--TLSVWEEIRPIVEAAAAK 164 (478)
T ss_dssp CC-EEE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred CC-eEe-ccC--CHHHHHHHHHHHHHhccc
Confidence 44 333 333 578899999999999974
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-11 Score=127.18 Aligned_cols=148 Identities=17% Similarity=0.048 Sum_probs=103.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----cCceecCCCcCCHhhhhc---cCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETIS---GSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----~G~~~~d~~~~~~~eav~---~ADvVi 183 (462)
++|+|||+|+||.++|++|.+. |++|.+++|..++ .+...+ .|+.. ..+++++++ ++|+||
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~-~~~l~~~~~~g~gi~~----~~~~~e~v~~l~~aDvVi 71 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLG----AHSLEEMVSKLKKPRRII 71 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEE----CSSHHHHHHHBCSSCEEE
T ss_pred CeEEEEChHHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHhccccCCCeEE----eCCHHHHHhhccCCCEEE
Confidence 5899999999999999999999 9998877776544 444444 56654 568888874 899999
Q ss_pred Eeecch-hHHHHHHHHHhcCCCCcEEEEec-cchH--HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCc
Q 012479 184 LLISDA-AQADNYEKIFSCMKPNSILGLSH-GFLL--GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (462)
Q Consensus 184 Lavpd~-a~~~vl~eI~~~Lk~gaiL~~a~-G~~i--~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv 259 (462)
++||+. ...++++++.+++++|++|++.+ |... ..+.+ .....++.++ .+|...+... -. .|.
T Consensus 72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~--~l~~~g~~~v-~~pv~g~~~~---a~-------~g~ 138 (482)
T 2pgd_A 72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR--DLKDKGILFV-GSGVSGGEDG---AR-------YGP 138 (482)
T ss_dssp ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEE-EEEEESHHHH---HH-------HCC
T ss_pred EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEe-CCCCCCChhh---hc-------cCC
Confidence 999996 67889999999999999887664 4421 12222 1112356666 4576433221 11 345
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 260 ~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.++ +.. +.++.+.+..+++.+|..
T Consensus 139 -~i~-~gg--~~e~~~~v~~ll~~~g~~ 162 (482)
T 2pgd_A 139 -SLM-PGG--NKEAWPHIKAIFQGIAAK 162 (482)
T ss_dssp -EEE-EEE--CTTTHHHHHHHHHHHSCB
T ss_pred -eEE-eCC--CHHHHHHHHHHHHHhhhh
Confidence 333 333 367888999999999974
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.4e-12 Score=126.82 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=109.7
Q ss_pred eeecCcccc----cccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec-CCchhHHHHHHcCceecCC
Q 012479 93 IVRGGRDLF----NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEENG 167 (462)
Q Consensus 93 ~~~~~~~~f----~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r-~~~~s~~~A~~~G~~~~d~ 167 (462)
-+|.|+|.. ......+.| ++|||||+|+||.++|+.|+.. |.+|++.++ ...+ ..+.+.|+..
T Consensus 125 ~~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~--~~~~~~g~~~--- 192 (320)
T 1gdh_A 125 MIRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASS--SDEASYQATF--- 192 (320)
T ss_dssp HHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCH--HHHHHHTCEE---
T ss_pred HHHcCCCCccccccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcCh--hhhhhcCcEE---
Confidence 457788852 122367999 9999999999999999999988 888877666 4333 3566678763
Q ss_pred CcCCHhhhhccCCeEEEeecchh-HHHHHH-HHHhcCCCCcEEEEeccchH-------HHhhhccccCCCCccEEecccC
Q 012479 168 TLGDIYETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPK 238 (462)
Q Consensus 168 ~~~~~~eav~~ADvViLavpd~a-~~~vl~-eI~~~Lk~gaiL~~a~G~~i-------~~~~~~~i~~p~~v~VV~v~Pn 238 (462)
..+.++++++||+|++++|... ...++. +..+.||+|++|+.++.-.+ ..+.+..+. ....+|+..+|
T Consensus 193 -~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~-gA~lDv~~~eP- 269 (320)
T 1gdh_A 193 -HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA-YAGFDVFAGEP- 269 (320)
T ss_dssp -CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCTTTT-
T ss_pred -cCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc-EEEEeCCCCCC-
Confidence 3478999999999999999764 445664 57889999998886653221 122221111 23467777788
Q ss_pred CCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHHHHH
Q 012479 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVALG 279 (462)
Q Consensus 239 gpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a~a 279 (462)
|. ...+|. .-+++++||. ..|.++.+.+..
T Consensus 270 -~~--~~~L~~--------~~nviltPH~~~~t~~~~~~~~~ 300 (320)
T 1gdh_A 270 -NI--NEGYYD--------LPNTFLFPHIGSAATQAREDMAH 300 (320)
T ss_dssp -SC--CTTGGG--------CTTEEECSSCTTCBHHHHHHHHH
T ss_pred -CC--CChhhh--------CCCEEECCcCCcCcHHHHHHHHH
Confidence 22 224565 4789999997 445555544433
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-11 Score=116.11 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=96.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc---Cc--eecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GF--TEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~---G~--~~~d~~~~~~~eav~~ADvViLav 186 (462)
|||+|||+|+||.++|.+|.++ |++|++.+|...+..+ .... |. .. .-.. +..++++++|+||+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~~~~~-l~~~~~~~~~~~~-~~~~-~~~~~~~~~d~vi~~v 71 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNE-SLTA-NDPDFLATSDLLLVTL 71 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEE-EEEE-SCHHHHHTCSEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCccceee-EEEEcCCCceeee-eeee-cCccccCCCCEEEEEe
Confidence 5899999999999999999999 9998887765432211 1111 11 00 0012 2346788999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE-EeccchH-HHhhhccccCCC---Cc---cEEecccCCCchhhHHhhhcCccccCCC
Q 012479 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSMGLDFPK---NI---GVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~-~a~G~~i-~~~~~~~i~~p~---~v---~VV~v~Pngpg~~vr~lf~~G~~~~G~G 258 (462)
|+....++++++.++++++++|+ ...|+.. ..+.+ .+++ .+ ...+.+| .+.+. +.|
T Consensus 72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~---~~~~~~~g~~~~~~~~~~p-~~~~~------------~~g 135 (291)
T 1ks9_A 72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQN---IQQPLLMGTTTHAARRDGN-VIIHV------------ANG 135 (291)
T ss_dssp CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT---CCSCEEEEEECCEEEEETT-EEEEE------------ECC
T ss_pred cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHH---hcCCeEEEEEeEccEEcCC-EEEEe------------ccc
Confidence 99999999999999999998654 5677754 23333 3333 00 1123344 22211 256
Q ss_pred ceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 259 v~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
... +.+.. .+.+..+.+..+++.+|..
T Consensus 136 ~~~-i~~~~-~~~~~~~~~~~ll~~~g~~ 162 (291)
T 1ks9_A 136 ITH-IGPAR-QQDGDYSYLADILQTVLPD 162 (291)
T ss_dssp CEE-EEESS-GGGTTCTHHHHHHHTTSSC
T ss_pred ceE-EccCC-CCcchHHHHHHHHHhcCCC
Confidence 644 54432 2456678889999999965
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-10 Score=119.35 Aligned_cols=210 Identities=13% Similarity=0.098 Sum_probs=132.1
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCceec-------CCCcCCH
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------NGTLGDI 172 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-------d~~~~~~ 172 (462)
+++|+|||+|.||.++|..|..+ |++|++.+++ ....+.+.+ .|.... .....+.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~------G~~V~l~D~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 109 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST 109 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH
Confidence 48999999999999999999999 9998776654 333333322 121000 0002355
Q ss_pred hhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEEE-eccchHHHhhhccccCCCCccEEecccCCCchhhHHhhh
Q 012479 173 YETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGL-SHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~~-a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~ 249 (462)
+++++||+||+++|.... .++++++.++++++++|+. +++..+..+.. .+...-+|+..||..|.+.
T Consensus 110 -~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~---~~~~~~~~ig~hf~~P~~~------ 179 (463)
T 1zcj_A 110 -KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHV------ 179 (463)
T ss_dssp -GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT------
T ss_pred -HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHH---HhcCCcceEEeecCCCccc------
Confidence 678999999999997653 5688899999999998764 34555555443 2233357999999877543
Q ss_pred cCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHH-HHHHHHHHHHHHHcC
Q 012479 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV-HGIVESLFRRFTENG 328 (462)
Q Consensus 250 ~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~-paliea~~d~~v~~G 328 (462)
+-...+.++...+++.++.+..+++.+|... +.. .+ ..-| +++-+ ..++...+ .+++.|
T Consensus 180 --------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~-v~v---~~--~~gf-----i~Nrll~~~~~ea~-~l~~~G 239 (463)
T 1zcj_A 180 --------MRLLEVIPSRYSSPTTIATVMSLSKKIGKIG-VVV---GN--CYGF-----VGNRMLAPYYNQGF-FLLEEG 239 (463)
T ss_dssp --------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEE-EEB---CC--STTT-----THHHHHHHHHHHHH-HHHHTT
T ss_pred --------ceeEEEeCCCCCCHHHHHHHHHHHHHhCCEE-EEE---CC--CccH-----HHHHHHHHHHHHHH-HHHHcC
Confidence 2234456677789999999999999999642 211 11 1222 22222 22222223 456679
Q ss_pred CCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHH
Q 012479 329 MNEDLAYKNTVECI---TGIISKIISTQGMLAVY 359 (462)
Q Consensus 329 ~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~ 359 (462)
.++++.....- .+ .| -..++-..|++..+
T Consensus 240 ~~~~~id~~~~-~~g~p~G-p~~l~D~~GlD~~~ 271 (463)
T 1zcj_A 240 SKPEDVDGVLE-EFGFKMG-PFRVSDLAGLDVGW 271 (463)
T ss_dssp CCHHHHHHHHH-HHTCSSC-HHHHHHHHCHHHHH
T ss_pred CCHHHHHHHHH-HcCCCCc-HHHHHHHcchHHHH
Confidence 99987665332 11 13 34555666775443
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.9e-13 Score=125.20 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=104.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
.++ +||+|||+|+||.++|.+|.+. |++|+++.|... .+.....|+. ..+..++++++|+||+++|
T Consensus 17 ~~~-~~I~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~--~~~~~~~g~~-----~~~~~~~~~~aDvVilav~ 82 (201)
T 2yjz_A 17 EKQ-GVVCIFGTGDFGKSLGLKMLQC------GYSVVFGSRNPQ--VSSLLPRGAE-----VLCYSEAASRSDVIVLAVH 82 (201)
Confidence 556 8999999999999999999988 888877766533 2333334555 2377889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE-EEeccch--------HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCC
Q 012479 188 DAAQADNYEKIFSCMKPNSIL-GLSHGFL--------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL-~~a~G~~--------i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~G 258 (462)
++...+++ ++.+ ++++++| ..+.|+. ..+++. .+|. .++|+++||+|.......-..| .
T Consensus 83 ~~~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~---~~~~-~~vvra~~n~~a~~~~~g~l~g------~ 150 (201)
T 2yjz_A 83 REHYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQ---LVPG-AHVVKAFNTISAWALQSGTLDA------S 150 (201)
Confidence 98777776 5554 4567765 4666774 234433 3343 4899999999887632111111 1
Q ss_pred ceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 259 v~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
...+++ .. +.++++.+..+++++|..
T Consensus 151 ~~~~~~-g~--~~~~~~~v~~ll~~~G~~ 176 (201)
T 2yjz_A 151 RQVFVC-GN--DSKAKDRVMDIARTLGLT 176 (201)
Confidence 123333 33 467899999999999964
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=122.53 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=110.9
Q ss_pred eeecCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC
Q 012479 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (462)
Q Consensus 93 ~~~~~~~~f~~-~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (462)
-+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |.+|+++++...+ +.+.+.|+. ..+
T Consensus 147 ~~~~g~W~~~~~~~~~l~g-~tvgIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~-----~~~ 212 (335)
T 2g76_A 147 SMKDGKWERKKFMGTELNG-KTLGILGLGRIGREVATRMQSF------GMKTIGYDPIISP--EVSASFGVQ-----QLP 212 (335)
T ss_dssp HHHTTCCCTGGGCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSSCH--HHHHHTTCE-----ECC
T ss_pred HHHcCCCCccCCCCcCCCc-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCce-----eCC
Confidence 45778996432 2467999 9999999999999999999987 9998766655333 456677876 358
Q ss_pred HhhhhccCCeEEEeecchh-HHHHH-HHHHhcCCCCcEEEEeccchH-------HHhhhccccCCCCccEEecccCCCch
Q 012479 172 IYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a-~~~vl-~eI~~~Lk~gaiL~~a~G~~i-------~~~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
.++++++||+|++++|... ...++ +++.+.||+|++|+.++.-.+ ..+.+..+ .....+|+..+|. +.
T Consensus 213 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i-~gA~lDV~~~EP~-~~- 289 (335)
T 2g76_A 213 LEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQC-AGAALDVFTEEPP-RD- 289 (335)
T ss_dssp HHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSE-EEEEESCCSSSSC-SC-
T ss_pred HHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCc-cEEEEeecCCCCC-CC-
Confidence 8999999999999999875 45566 468899999999887764321 12222111 1124678888983 22
Q ss_pred hhHHhhhcCccccCCCceEEEeecc-CCCHHHHHH
Q 012479 243 SVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~ 276 (462)
..+|. .-+++++||. ..|.++.+.
T Consensus 290 --~~L~~--------~~nvilTPH~~~~t~e~~~~ 314 (335)
T 2g76_A 290 --RALVD--------HENVISCPHLGASTKEAQSR 314 (335)
T ss_dssp --CHHHH--------STTEEECSSCTTCBHHHHHH
T ss_pred --chHHh--------CCCEEECCcCCCCCHHHHHH
Confidence 34665 3689999997 445555443
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-10 Score=121.69 Aligned_cols=152 Identities=17% Similarity=0.057 Sum_probs=103.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC-CCcCCHhhhhc---cCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS---GSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d-~~~~~~~eav~---~ADvViLavp 187 (462)
++|||||+|+||.++|++|.+. |++|++++|+.++ .+...+.|..... ....+++|+++ ++|+||++||
T Consensus 5 ~kIgiIGlG~MG~~lA~~L~~~------G~~V~v~dr~~~~-~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp 77 (484)
T 4gwg_A 5 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVK 77 (484)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSC
T ss_pred CEEEEEChhHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecC
Confidence 7899999999999999999999 9998887776554 4444443321000 01467888887 5999999999
Q ss_pred ch-hHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 188 DA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 188 d~-a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+. ...++++++.++|++|++|++.+.... ....+ .....++.++.. |..-+.. .-.. |. +++
T Consensus 78 ~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~--~l~~~Gi~fvd~-pVsGg~~---gA~~-------G~-~im 143 (484)
T 4gwg_A 78 AGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCR--DLKAKGILFVGS-GVSGGEE---GARY-------GP-SLM 143 (484)
T ss_dssp SSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEEE-EEESHHH---HHHH-------CC-EEE
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHH--HHHhhccccccC-CccCCHH---HHhc-------CC-eee
Confidence 95 667899999999999999988876532 11111 111346777763 6422221 1122 34 433
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCC
Q 012479 264 AVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.. +.++.+.++.+++.+|..
T Consensus 144 -~GG--~~ea~~~v~pll~~ig~~ 164 (484)
T 4gwg_A 144 -PGG--NKEAWPHIKTIFQGIAAK 164 (484)
T ss_dssp -EEE--CGGGHHHHHHHHHHHSCB
T ss_pred -cCC--CHHHHHHHHHHHHHhcCc
Confidence 444 468999999999999974
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.8e-11 Score=116.09 Aligned_cols=152 Identities=21% Similarity=0.179 Sum_probs=104.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC--C--------CcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d--~--------~~~~~~eav~~ADv 181 (462)
+||+|||.|+||.++|..|.++ |.+|.++.|.. .+..++.|+.... + .+.+. +.++.+|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS------GEDVHFLLRRD---YEAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDL 72 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT------SCCEEEECSTT---HHHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEEcCc---HHHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCE
Confidence 7899999999999999999999 88888877753 3555667764311 0 01233 44789999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcE-EEEeccch-HHHhhhccccCCCCccEEecc------cCCCchhhHHhhhcCcc
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-LGHLQSMGLDFPKNIGVIAVC------PKGMGPSVRRLYVQGKE 253 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~-i~~~~~~~i~~p~~v~VV~v~------Pngpg~~vr~lf~~G~~ 253 (462)
||++||+.+..+++++|.|+++++++ |+...|+. ...+.+ .+|++ +|+..+ -.+|+++.. .
T Consensus 73 vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~---~~~~~-~v~~~~~~~~a~~~~p~~v~~---~---- 141 (312)
T 3hn2_A 73 VLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALAT---LFGAE-RIIGGVAFLCSNRGEPGEVHH---L---- 141 (312)
T ss_dssp EEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHH---HTCGG-GEEEEEEEEECCBCSSSEEEE---C----
T ss_pred EEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEEEEeeeEEcCCcEEEE---C----
Confidence 99999999999999999999999886 56778985 444444 34442 454433 345666521 1
Q ss_pred ccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 254 ~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
|.|... ++.....+.+..+.+.+++...|..
T Consensus 142 --~~g~~~-ig~~~~~~~~~~~~l~~~l~~~g~~ 172 (312)
T 3hn2_A 142 --GAGRII-LGEFLPRDTGRIEELAAMFRQAGVD 172 (312)
T ss_dssp --EEEEEE-EEESSCCCSHHHHHHHHHHHHTTCC
T ss_pred --CCCeEE-EecCCCCccHHHHHHHHHHHhCCCC
Confidence 234433 4444434456667778888888864
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-10 Score=124.13 Aligned_cols=243 Identities=11% Similarity=0.058 Sum_probs=142.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCceec-------C--CCcC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------N--GTLG 170 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-------d--~~~~ 170 (462)
|+||+|||.|.||.++|.+|.++ |++|++++++.+ ..+.+.+ .|.... + ....
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~~-~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 384 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS------NYPVILKEVNEK-FLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSL 384 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHH-HHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEES
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeC
Confidence 48999999999999999999999 999887766533 3333221 232100 0 0123
Q ss_pred CHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHHh
Q 012479 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~l 247 (462)
+. +++++||+||+++|+... ..++.++.++++++++|+ .++++.+..+.+ .....-+|+..|+--|.+.
T Consensus 385 d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~p~~~iG~hf~~P~~~---- 456 (725)
T 2wtb_A 385 DY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGE---RTKSQDRIVGAHFFSPAHI---- 456 (725)
T ss_dssp SS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TCSCTTTEEEEEECSSTTT----
T ss_pred CH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---HhcCCCCEEEecCCCCccc----
Confidence 45 678999999999998764 468889999999999875 466776655543 2222236899998766543
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHc
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTEN 327 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~ 327 (462)
+-...+.++...+++.++.+..+++.+|.. ++... +. .-|-.--++. +.+.|+ -.+++.
T Consensus 457 ----------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~-~v~v~---d~--~Gfi~Nril~---~~~~Ea--~~l~~~ 515 (725)
T 2wtb_A 457 ----------MPLLEIVRTNHTSAQVIVDLLDVGKKIKKT-PVVVG---NC--TGFAVNRMFF---PYTQAA--MFLVEC 515 (725)
T ss_dssp ----------CCEEEEEECSSCCHHHHHHHHHHHHHTTCE-EEEEE---SS--TTTTHHHHHH---HHHHHH--HHHHHT
T ss_pred ----------CceEEEEECCCCCHHHHHHHHHHHHHhCCE-EEEEC---CC--ccHHHHHHHH---HHHHHH--HHHHHC
Confidence 123335567778999999999999999964 22111 11 1121111121 235555 235566
Q ss_pred CCCHHHHHHHHHHHHH---HHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHHHHHHHHHhccCChhhhH
Q 012479 328 GMNEDLAYKNTVECIT---GIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRS 400 (462)
Q Consensus 328 G~~~e~A~~~~~e~i~---Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~~m~e~~~~i~~G~far~ 400 (462)
|+++++..... ...- | --.++-..|++..++-... -...|++. .|.| ..+++++ ..|.+.|+
T Consensus 516 G~~~e~id~~~-~~~g~p~G-p~~l~D~vGld~~~~i~~~-~~~~~~~~---~~~~--~~l~~~v---~~g~lG~k 580 (725)
T 2wtb_A 516 GADPYLIDRAI-SKFGMPMG-PFRLCDLVGFGVAIATATQ-FIENFSER---TYKS--MIIPLMQ---EDKRAGEA 580 (725)
T ss_dssp TCCHHHHHHHH-HHHTCSSC-HHHHHHHHCHHHHHHHHHH-HHHHSGGG---CCCC--THHHHHH---TTC-----
T ss_pred CCCHHHHHHHH-HHcCCCCC-HHHHHHHhchHHHHHHHHH-HHHhcCCc---cCCh--HHHHHHH---HCCCceec
Confidence 99998776644 2211 3 2455556676544433221 11223431 1343 3555544 45777765
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.2e-11 Score=112.61 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=91.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.+ +||+|||+|+||.++|..|.+. |++|++++|... ++++||+||++
T Consensus 15 ~~~~~-~~I~iiG~G~mG~~la~~l~~~------g~~V~~~~~~~~-----------------------~~~~aD~vi~a 64 (209)
T 2raf_A 15 LYFQG-MEITIFGKGNMGQAIGHNFEIA------GHEVTYYGSKDQ-----------------------ATTLGEIVIMA 64 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCC-----------------------CSSCCSEEEEC
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHH-----------------------HhccCCEEEEc
Confidence 55667 9999999999999999999998 988877665422 35689999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEE-eccch---------------HHHhhhccccCCCCccEEe-cccCCCchhhHHhh
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGL-SHGFL---------------LGHLQSMGLDFPKNIGVIA-VCPKGMGPSVRRLY 248 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~-a~G~~---------------i~~~~~~~i~~p~~v~VV~-v~Pngpg~~vr~lf 248 (462)
+|+....++++++.+.++ +++|++ +.|+. ...+++ .+| +.+|++ ++|.. ++.....-
T Consensus 65 v~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~---~l~-~~~vv~~~~~~~-~p~~~~~~ 138 (209)
T 2raf_A 65 VPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQ---QLP-DSQVLKAFNTTF-AATLQSGQ 138 (209)
T ss_dssp SCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHH---HCT-TSEEEECSTTSC-HHHHHHSE
T ss_pred CCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHH---HCC-CCcEEEeeeccc-Hhhccccc
Confidence 999999999999999888 887664 45664 233333 334 467888 55531 22211111
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCC
Q 012479 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~ 286 (462)
.. |.+...++. .. .+.++.+.+.++++.+|.
T Consensus 139 ~~-----g~~~~~~~~-~g-~~~~~~~~v~~ll~~~G~ 169 (209)
T 2raf_A 139 VN-----GKEPTTVLV-AG-NDDSAKQRFTRALADSPL 169 (209)
T ss_dssp ET-----TTEECEEEE-EE-SCHHHHHHHHHHTTTSSC
T ss_pred cC-----CCCCceeEE-cC-CCHHHHHHHHHHHHHcCC
Confidence 11 112333222 22 257889999999999996
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=113.94 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=121.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-------------------cC-ceecCCCcCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~d~~~~~ 171 (462)
|||+|||+|.||.++|..|.+. |++|++.++. .+..+...+ .| +.. +.+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~------G~~V~~~d~~-~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~----t~~ 69 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR------GHEVIGVDVS-STKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG----TTD 69 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE----eCC
Confidence 5899999999999999999999 9988665554 333433333 23 332 457
Q ss_pred HhhhhccCCeEEEeecchh----------HHHHHHHHHhcCCC---CcEEEEeccchHHH----h----hhc-cccCCCC
Q 012479 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKP---NSILGLSHGFLLGH----L----QSM-GLDFPKN 229 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a----------~~~vl~eI~~~Lk~---gaiL~~a~G~~i~~----~----~~~-~i~~p~~ 229 (462)
.++++++||+||+++|... ..+++++|.+++++ +++|++.+++.... + ... +.....+
T Consensus 70 ~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~ 149 (436)
T 1mv8_A 70 FKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVD 149 (436)
T ss_dssp HHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred HHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCc
Confidence 8888999999999998655 77888999999999 89887765442211 1 110 1111112
Q ss_pred ccEEecccC--CCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhH
Q 012479 230 IGVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERG 307 (462)
Q Consensus 230 v~VV~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqt 307 (462)
.. +...|. .|+..+.+++. .+.++ +.. .++++.+.+..++..+|.. ++.++... .+.-.+.+.+
T Consensus 150 ~~-v~~~Pe~~~~G~~~~~~~~---------~~~iv-~G~-~~~~~~~~~~~l~~~~~~~-v~~~~~~~-ae~~Kl~~N~ 215 (436)
T 1mv8_A 150 FG-VGTNPEFLRESTAIKDYDF---------PPMTV-IGE-LDKQTGDLLEEIYRELDAP-IIRKTVEV-AEMIKYTCNV 215 (436)
T ss_dssp BE-EEECCCCCCTTSHHHHHHS---------CSCEE-EEE-SSHHHHHHHHHHHTTSSSC-EEEEEHHH-HHHHHHHHHH
T ss_pred EE-EEECcccccccccchhccC---------CCEEE-EEc-CCHHHHHHHHHHHhccCCC-EEcCCHHH-HHHHHHHHHH
Confidence 23 344554 44544444333 12222 222 2578899999999999963 32232211 1111121211
Q ss_pred hHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 308 ILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 308 vL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
.....-+++..+...+.+.|+++++...
T Consensus 216 -~~a~~ia~~nE~~~l~~~~Gid~~~v~~ 243 (436)
T 1mv8_A 216 -WHAAKVTFANEIGNIAKAVGVDGREVMD 243 (436)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 1122235777788888899999876544
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=118.15 Aligned_cols=157 Identities=20% Similarity=0.162 Sum_probs=107.5
Q ss_pred eecCcccccc-----------cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 012479 94 VRGGRDLFNL-----------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 94 ~~~~~~~f~~-----------~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (462)
+|+|+|.... ....+.| ++|||||+|.||.++|+.|+.. |.+|+++++. ...+.+.+.|+
T Consensus 133 ~~~g~W~~~~~~~~~~~~~~~~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~--~~~~~~~~~g~ 203 (352)
T 3gg9_A 133 LKHGAWQQSGLKSTTMPPNFGIGRVLKG-QTLGIFGYGKIGQLVAGYGRAF------GMNVLVWGRE--NSKERARADGF 203 (352)
T ss_dssp HHTTCTTCCCCCCTTSCTTTTSBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSH--HHHHHHHHTTC
T ss_pred HHcCCCCcccccccccccccccCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEECCC--CCHHHHHhcCc
Confidence 4667886531 2478999 9999999999999999999988 9998766554 23456677888
Q ss_pred eecCCCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEeccch-------HHHhhhccccCCCCccEE
Q 012479 163 TEENGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVI 233 (462)
Q Consensus 163 ~~~d~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~G~~-------i~~~~~~~i~~p~~v~VV 233 (462)
.. +.+.+|++++||+|++++|.... ..++. +..+.||+|++|+.++--. +..+++..+. ....||+
T Consensus 204 ~~----~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~-gA~lDV~ 278 (352)
T 3gg9_A 204 AV----AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPG-MAAIDVF 278 (352)
T ss_dssp EE----CSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSS-EEEECCC
T ss_pred eE----eCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCcc-EEEeccc
Confidence 74 45899999999999999996544 44554 6889999999998776321 1222221111 2345677
Q ss_pred ecccCCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHH
Q 012479 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 234 ~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e 275 (462)
.-.|--+.+. ++. --+.+++||- ..+.+..+
T Consensus 279 ~~EPl~~~~p---L~~--------~~nvilTPHia~~t~e~~~ 310 (352)
T 3gg9_A 279 ETEPILQGHT---LLR--------MENCICTPHIGYVERESYE 310 (352)
T ss_dssp SSSCCCSCCG---GGG--------CTTEEECCSCTTCBHHHHH
T ss_pred CCCCCCCCCh---hhc--------CCCEEECCCCCCCCHHHHH
Confidence 6666433332 343 2578899987 34444433
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=116.24 Aligned_cols=155 Identities=19% Similarity=0.199 Sum_probs=97.4
Q ss_pred eeecCccccc---ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCc
Q 012479 93 IVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (462)
Q Consensus 93 ~~~~~~~~f~---~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (462)
-+|.|+|... .....+.| |||||||+|+||.++|+.|+.. |++|+++++...+ ..++.. .
T Consensus 151 ~~~~g~W~~~~~~~~~~~l~g-ktiGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~------~~~~~~----~ 213 (340)
T 4dgs_A 151 LVREGRWAAGEQLPLGHSPKG-KRIGVLGLGQIGRALASRAEAF------GMSVRYWNRSTLS------GVDWIA----H 213 (340)
T ss_dssp HHHTTCC------CCCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCT------TSCCEE----C
T ss_pred HHhcCCcccccCcCccccccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCccc------ccCcee----c
Confidence 4577889653 12378999 9999999999999999999988 9998777665332 234443 5
Q ss_pred CCHhhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec-cchH------HHhhhccccCCCCccEEecccCCC
Q 012479 170 GDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFLL------GHLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~a~-~~vl-~eI~~~Lk~gaiL~~a~-G~~i------~~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
.+.+|++++||+|++++|.... ..++ +++.+.||+|++|+.++ |-.+ ..+.+.. ......||..-.|..+
T Consensus 214 ~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~-i~gA~LDVf~~EP~~~ 292 (340)
T 4dgs_A 214 QSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGT-IAGAGLDVFVNEPAIR 292 (340)
T ss_dssp SSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CC-SSEEEESCCSSSSSCC
T ss_pred CCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCC-ceEEEeCCcCCCCCCc
Confidence 6899999999999999996544 4566 47888999999988665 3211 1111111 1122467777777433
Q ss_pred chhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 012479 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (462)
Q Consensus 241 g~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a 277 (462)
. .++.- -+.+++||- ..|.++.+.+
T Consensus 293 -~---~L~~~--------~nvilTPHia~~t~e~~~~~ 318 (340)
T 4dgs_A 293 -S---EFHTT--------PNTVLMPHQGSATVETRMAM 318 (340)
T ss_dssp -S---HHHHS--------SSEEECSSCSSCCHHHHHHH
T ss_pred -c---chhhC--------CCEEEcCcCCcCCHHHHHHH
Confidence 2 35552 578899987 4555554443
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-11 Score=119.07 Aligned_cols=151 Identities=15% Similarity=0.106 Sum_probs=104.3
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
+|+|+|.+... ..+.| +||||||+|+||.++|+.|+.. |++|+++++...+. ..+.. ..+.+
T Consensus 107 ~~~g~w~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~----~~~l~ 168 (290)
T 3gvx_A 107 MKAGIFRQSPT-TLLYG-KALGILGYGGIGRRVAHLAKAF------GMRVIAYTRSSVDQ------NVDVI----SESPA 168 (290)
T ss_dssp HHTTCCCCCCC-CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSCCCT------TCSEE----CSSHH
T ss_pred hhhcccccCCc-eeeec-chheeeccCchhHHHHHHHHhh------CcEEEEEecccccc------ccccc----cCChH
Confidence 57788976544 67999 9999999999999999999998 99988776653321 11332 45899
Q ss_pred hhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhh
Q 012479 174 ETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 174 eav~~ADvViLavpd~a~-~~vl-~eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
|++++||+|++++|.... ..++ ++..+.||+|++|+.++ |-. +..+++..+ .....||+...|. +
T Consensus 169 ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i-~ga~lDV~~~EP~---~-- 242 (290)
T 3gvx_A 169 DLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSD-VWYLSDVWWNEPE---I-- 242 (290)
T ss_dssp HHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTT-CEEEESCCTTTTS---C--
T ss_pred HHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccc-eEEeeccccCCcc---c--
Confidence 999999999999996443 4555 46889999999998776 321 122222111 1235678877775 1
Q ss_pred HHhhhcCccccCCCceEEEeecc--CCCHHHHHHH
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQ--DVDGRATNVA 277 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~q--d~tgea~e~a 277 (462)
.+|. --+++++||- ..+.++.+.+
T Consensus 243 -pL~~--------~~nvilTPHiag~~t~e~~~~~ 268 (290)
T 3gvx_A 243 -TETN--------LRNAILSPHVAGGMSGEIMDIA 268 (290)
T ss_dssp -CSCC--------CSSEEECCSCSSCBTTBCCHHH
T ss_pred -chhh--------hhhhhcCccccCCccchHHHHH
Confidence 2332 4678899994 3455544443
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6.4e-11 Score=122.60 Aligned_cols=159 Identities=14% Similarity=-0.002 Sum_probs=108.1
Q ss_pred eeecCcccccc---cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCc
Q 012479 93 IVRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (462)
Q Consensus 93 ~~~~~~~~f~~---~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (462)
.+|+|+|.... ....+.| ++|||||+|+||.++|+.|+.. |.+|+++++.. ...+.+.+.|+.. .
T Consensus 171 ~~~~g~W~~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~-~~~~~~~~~G~~~----~ 238 (393)
T 2nac_A 171 WARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHR-LPESVEKELNLTW----H 238 (393)
T ss_dssp HHHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSC-CCHHHHHHHTCEE----C
T ss_pred HHHcCCCCccccccCCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEEcCCc-cchhhHhhcCcee----c
Confidence 46788996421 1257899 9999999999999999999988 99887666543 2345666678764 4
Q ss_pred CCHhhhhccCCeEEEeecch-hHHHHH-HHHHhcCCCCcEEEEeccchH-------HHhhhccccCCCCccEEecccCCC
Q 012479 170 GDIYETISGSDLVLLLISDA-AQADNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~-a~~~vl-~eI~~~Lk~gaiL~~a~G~~i-------~~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
.+.++++++||+|++++|.. ....++ ++..+.||+|++|+.++--.+ ..+.+..+ .....||+..+|.-+
T Consensus 239 ~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i-~gA~lDV~~~EP~~~ 317 (393)
T 2nac_A 239 ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL-AGYAGDVWFPQPAPK 317 (393)
T ss_dssp SSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSE-EEEEESCCSSSSCCT
T ss_pred CCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCe-eEEEEEecCCCCCCC
Confidence 57899999999999999965 335566 467889999998886653221 12222111 123467787778544
Q ss_pred chhhHHhhhcCccccCCCceEEEeecc-CCCHHHHH
Q 012479 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 241 g~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e 275 (462)
.+. +|. --+++++||. ..+.++.+
T Consensus 318 ~~p---L~~--------~~nvilTPHia~~T~e~~~ 342 (393)
T 2nac_A 318 DHP---WRT--------MPYNGMTPHISGTTLTAQA 342 (393)
T ss_dssp TCG---GGT--------STTBCCCCSCTTCSHHHHH
T ss_pred CCh---hHc--------CCCEEECCCCCcCcHHHHH
Confidence 333 443 3567788887 44555443
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=115.69 Aligned_cols=153 Identities=10% Similarity=0.016 Sum_probs=102.8
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
+|.|+|........+.| ++|||||+|+||.++|++|+.. |++|+++++... + .+... ..+.+
T Consensus 108 ~~~g~w~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~dr~~~---~----~~~~~----~~~l~ 169 (303)
T 1qp8_A 108 MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPK---E----GPWRF----TNSLE 169 (303)
T ss_dssp HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCC---C----SSSCC----BSCSH
T ss_pred HHcCCCCCCCCCCCCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcc---c----cCccc----CCCHH
Confidence 46788964323347999 9999999999999999999988 999877665432 1 13332 45788
Q ss_pred hhhccCCeEEEeecchh-HHHHHH-HHHhcCCCCcEEEEeccchH-------HHhhhccccCCCCccEEecccCCCchhh
Q 012479 174 ETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 174 eav~~ADvViLavpd~a-~~~vl~-eI~~~Lk~gaiL~~a~G~~i-------~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
+++++||+|++++|... ...++. ++.+.||+|++|+.++--.+ ..+.+..+ .....+|.. ...|.+..
T Consensus 170 ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i-~gA~lDv~~--~~ep~~~~ 246 (303)
T 1qp8_A 170 EALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQ-FIFASDVWW--GRNDFAKD 246 (303)
T ss_dssp HHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTT-CEEEESCCT--TTTCCGGG
T ss_pred HHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCc-eEEEeccCC--CCCCCCCC
Confidence 99999999999999875 456665 68899999999987764322 11222111 111233330 33444444
Q ss_pred HHhhhcCccccCCCceEEEeeccCC---CHHHHH
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQDV---DGRATN 275 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~qd~---tgea~e 275 (462)
..+|. .-+++++||... +.+..+
T Consensus 247 ~~L~~--------~~nviltPH~~~~~~t~e~~~ 272 (303)
T 1qp8_A 247 AEFFS--------LPNVVATPWVAGGYGNERVWR 272 (303)
T ss_dssp HHHHT--------STTEEECCSCSSSSSCHHHHH
T ss_pred Chhhc--------CCCEEECCCcCCCCCCHHHHH
Confidence 55676 368899999753 566543
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=116.12 Aligned_cols=154 Identities=21% Similarity=0.159 Sum_probs=103.7
Q ss_pred eeecCcccc-c---ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCC
Q 012479 93 IVRGGRDLF-N---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (462)
Q Consensus 93 ~~~~~~~~f-~---~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (462)
-+|+|+|.. . .....+.| ++|||||+|+||.++|++|+.. |.+|+++++...+.. +.
T Consensus 123 ~~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~~-------~~----- 183 (311)
T 2cuk_A 123 YARDGLWKAWHPELLLGLDLQG-LTLGLVGMGRIGQAVAKRALAF------GMRVVYHARTPKPLP-------YP----- 183 (311)
T ss_dssp HHHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSSS-------SC-----
T ss_pred HHHcCCCCccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHC------CCEEEEECCCCcccc-------cc-----
Confidence 357788852 1 12357899 9999999999999999999988 999877666543321 22
Q ss_pred cCCHhhhhccCCeEEEeecchh-HHHHHH-HHHhcCCCCcEEEEeccchHH---Hhhh--ccccCCCCccEEecccCCCc
Q 012479 169 LGDIYETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILGLSHGFLLG---HLQS--MGLDFPKNIGVIAVCPKGMG 241 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a-~~~vl~-eI~~~Lk~gaiL~~a~G~~i~---~~~~--~~i~~p~~v~VV~v~Pngpg 241 (462)
..+.++++++||+|++++|+.. ...++. +..+.||+|++|+.++.-.+. .+.+ .+.......+|+..+|..+.
T Consensus 184 ~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~~eP~~~~ 263 (311)
T 2cuk_A 184 FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTDPEPLPPG 263 (311)
T ss_dssp BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCSSSSCCTT
T ss_pred cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCCCCCCCCC
Confidence 4578899999999999999875 456664 677899999998876643221 1111 01111124677777774332
Q ss_pred hhhHHhhhcCccccCCCceEEEeeccC-CCHHHHHH
Q 012479 242 PSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (462)
Q Consensus 242 ~~vr~lf~~G~~~~G~Gv~aliav~qd-~tgea~e~ 276 (462)
..+|. .-+++++||.. .|.+..+.
T Consensus 264 ---~~L~~--------~~nviltPh~~~~t~~~~~~ 288 (311)
T 2cuk_A 264 ---HPLYA--------LPNAVITPHIGSAGRTTRER 288 (311)
T ss_dssp ---SGGGG--------CTTEEECCSCTTCBHHHHHH
T ss_pred ---Chhhh--------CCCEEECCcCCCCCHHHHHH
Confidence 24565 46889999974 44554433
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=117.38 Aligned_cols=155 Identities=21% Similarity=0.214 Sum_probs=103.3
Q ss_pred eeecCccc-----cc---ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee
Q 012479 93 IVRGGRDL-----FN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (462)
Q Consensus 93 ~~~~~~~~-----f~---~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (462)
-+|.|+|. +. .....+.| ++|||||+|.||.++|+.|+.. |++|+++++...+ +.+.+.|+.
T Consensus 125 ~~~~~~w~~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~- 194 (334)
T 2dbq_A 125 FVRSGEWKKRGVAWHPKWFLGYDVYG-KTIGIIGLGRIGQAIAKRAKGF------NMRILYYSRTRKE--EVERELNAE- 194 (334)
T ss_dssp HHHTSHHHHTTCCCCTTTTCCCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHHCCE-
T ss_pred HHHcCCCcccccccccccccccCCCC-CEEEEEccCHHHHHHHHHHHhC------CCEEEEECCCcch--hhHhhcCcc-
Confidence 35667785 11 11357899 9999999999999999999988 9998776665433 455566775
Q ss_pred cCCCcCCHhhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec-cchH------HHhhhccccCCCCccEEec
Q 012479 165 ENGTLGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFLL------GHLQSMGLDFPKNIGVIAV 235 (462)
Q Consensus 165 ~d~~~~~~~eav~~ADvViLavpd~a~-~~vl-~eI~~~Lk~gaiL~~a~-G~~i------~~~~~~~i~~p~~v~VV~v 235 (462)
..+.++++++||+|++++|+... ..++ +++.+.|++|++|+.++ |..+ ..+....+. ....+|...
T Consensus 195 ----~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~-ga~lDv~~~ 269 (334)
T 2dbq_A 195 ----FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIA-GAGLDVFEE 269 (334)
T ss_dssp ----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS-EEEESCCSS
T ss_pred ----cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee-EEEecCCCC
Confidence 35788999999999999998774 4566 46788999999887654 4211 112221111 122455555
Q ss_pred ccCCCchhhHHhhhcCccccCCCceEEEeeccC-CCHHHH
Q 012479 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRAT 274 (462)
Q Consensus 236 ~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd-~tgea~ 274 (462)
.| | ....+|. .-+.+++||.. .+.+..
T Consensus 270 EP--~--~~~~L~~--------~~~vi~tPh~~~~t~~~~ 297 (334)
T 2dbq_A 270 EP--Y--YNEELFK--------LDNVVLTPHIGSASFGAR 297 (334)
T ss_dssp SS--C--CCHHHHH--------CTTEEECSSCTTCSHHHH
T ss_pred CC--C--CCchhhc--------CCCEEECCccCCCcHHHH
Confidence 55 2 2234565 36788999873 344443
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-11 Score=120.16 Aligned_cols=155 Identities=21% Similarity=0.261 Sum_probs=104.5
Q ss_pred ceeecCcccccc--cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCc
Q 012479 92 YIVRGGRDLFNL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (462)
Q Consensus 92 ~~~~~~~~~f~~--~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (462)
.-+|.|+|.... ....+.| ++|||||+|+||.++|+.|+.. |.+|+++++...+. .|+.. .
T Consensus 144 ~~~~~g~w~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~dr~~~~~------~g~~~----~ 206 (333)
T 3ba1_A 144 KYVRRGAWKFGDFKLTTKFSG-KRVGIIGLGRIGLAVAERAEAF------DCPISYFSRSKKPN------TNYTY----Y 206 (333)
T ss_dssp HHHHTTGGGGCCCCCCCCCTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSCCTT------CCSEE----E
T ss_pred HHHHcCCCCccccccccccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCchhc------cCcee----c
Confidence 345778896421 1367999 9999999999999999999988 88887776653321 25553 4
Q ss_pred CCHhhhhccCCeEEEeecchh-HHHHH-HHHHhcCCCCcEEEEec-cchH------HHhhhccccCCCCccEEecccCCC
Q 012479 170 GDIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSH-GFLL------GHLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~a-~~~vl-~eI~~~Lk~gaiL~~a~-G~~i------~~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
.+.++++++||+|++++|+.. ...++ +++.+.||+|++|+.++ |..+ ..+.+..+. ....+|+..+|. |
T Consensus 207 ~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~-ga~lDv~~~EP~-~ 284 (333)
T 3ba1_A 207 GSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLG-GAGLDVFEREPE-V 284 (333)
T ss_dssp SCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSC-EEEESCCTTTTC-C
T ss_pred CCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCe-EEEEecCCCCCC-C
Confidence 688999999999999999864 45666 46778899999887655 4321 112221111 124578877884 3
Q ss_pred chhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHH
Q 012479 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (462)
Q Consensus 241 g~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~ 276 (462)
. ..+|. ..+++++||. ..+.++.+.
T Consensus 285 ~---~~L~~--------~~nviltPH~~~~t~e~~~~ 310 (333)
T 3ba1_A 285 P---EKLFG--------LENVVLLPHVGSGTVETRKV 310 (333)
T ss_dssp C---GGGGG--------CTTEEECSSCTTCSHHHHHH
T ss_pred c---chhhc--------CCCEEECCcCCCCCHHHHHH
Confidence 2 23554 3688899887 345554433
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-10 Score=108.26 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=99.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
+||+|||+|.||.+++.+|.+. |++|++.+|+. +..+...+.|+.. .+..++++++|+||+++|+...
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~------g~~V~~~~r~~-~~~~~~~~~g~~~-----~~~~~~~~~~DvVi~av~~~~~ 96 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGS------GFKVVVGSRNP-KRTARLFPSAAQV-----TFQEEAVSSPEVIFVAVFREHY 96 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSH-HHHHHHSBTTSEE-----EEHHHHTTSCSEEEECSCGGGS
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCce-----ecHHHHHhCCCEEEECCChHHH
Confidence 7899999999999999999998 88887776653 3344444446663 3788899999999999999876
Q ss_pred HHHHHHHHhcCCCCcEEE-EeccchHHHh----------hhccccCCCCccEEecccCCC-chhhHHhhhcCccccCCCc
Q 012479 192 ADNYEKIFSCMKPNSILG-LSHGFLLGHL----------QSMGLDFPKNIGVIAVCPKGM-GPSVRRLYVQGKEINGAGI 259 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~----------~~~~i~~p~~v~VV~v~Pngp-g~~vr~lf~~G~~~~G~Gv 259 (462)
.++++ +.+.+ ++++|+ .+.|..+..+ .+ .+| +.+|++.+ |.. ++........ |-
T Consensus 97 ~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~---~l~-~~~vv~~~-n~~~~~~~~~~~~~-------g~ 162 (215)
T 2vns_A 97 SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLAS---LFP-TCTVVKAF-NVISAWTLQAGPRD-------GN 162 (215)
T ss_dssp GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHH---HCT-TSEEEEEC-TTBCHHHHHTCSCS-------SC
T ss_pred HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHH---HCC-CCeEEecc-ccccHhHhcccccC-------Cc
Confidence 67775 66666 777765 5566654322 12 234 35788876 432 2221111111 22
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 260 ~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.++... .+.++.+.+..+++.+|..
T Consensus 163 ~~~~~~g--~~~~~~~~v~~ll~~~G~~ 188 (215)
T 2vns_A 163 RQVPICG--DQPEAKRAVSEMALAMGFM 188 (215)
T ss_dssp CEEEEEE--SCHHHHHHHHHHHHHTTCE
T ss_pred eeEEEec--CCHHHHHHHHHHHHHcCCc
Confidence 2222223 3688999999999999974
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-09 Score=114.22 Aligned_cols=200 Identities=13% Similarity=0.106 Sum_probs=123.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-------------------cC-ceecCCCcCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~d~~~~~ 171 (462)
|||+|||+|.||.++|.+|.+. |++|+++++. .+..+...+ .| +.. +.+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~------G~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~----t~d 71 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL------GANVRCIDTD-RNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF----GTE 71 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE----ESC
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CCEEEEEECC-HHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE----ECC
Confidence 6999999999999999999999 9998766554 333333332 12 222 467
Q ss_pred HhhhhccCCeEEEeecch----------hHHHHHHHHHhcCCCCcEEEEeccchHH---H----hhhccccCC--CCccE
Q 012479 172 IYETISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLLG---H----LQSMGLDFP--KNIGV 232 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~----------a~~~vl~eI~~~Lk~gaiL~~a~G~~i~---~----~~~~~i~~p--~~v~V 232 (462)
.++++++||+||+++|.. ...+++++|.+++++|++|++.+.+... . +.+...... .++ .
T Consensus 72 ~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~-~ 150 (450)
T 3gg2_A 72 IEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDF-D 150 (450)
T ss_dssp HHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCE-E
T ss_pred HHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcce-e
Confidence 888999999999999977 6788999999999999998887765211 1 111000011 222 3
Q ss_pred EecccCC--CchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC--cccccchhhhccccchhhhHh
Q 012479 233 IAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERGI 308 (462)
Q Consensus 233 V~v~Png--pg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~--~viettf~~E~~~dlfgeqtv 308 (462)
+...|.. +|..+.+... .+.++ +.. .+.++.+.+..+++.++.. .++.++. ...+.-.+.+.+
T Consensus 151 v~~~Pe~a~eG~~~~~~~~---------p~~iv-vG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~-~~aE~~Kl~~N~- 217 (450)
T 3gg2_A 151 IASNPEFLKEGNAIDDFMK---------PDRVV-VGV-DSDRARELITSLYKPMLLNNFRVLFMDI-ASAEMTKYAANA- 217 (450)
T ss_dssp EEECCCCCCTTSHHHHHHS---------CSCEE-EEE-SSHHHHHHHHHHHTTTCCSCCCEEEECH-HHHHHHHHHHHH-
T ss_pred EEechhhhcccchhhhccC---------CCEEE-EEc-CCHHHHHHHHHHHHHHhcCCCeEEecCH-HHHHHHHHHHHH-
Confidence 4455652 2333222222 22222 222 2578999999999999862 2222222 222222333333
Q ss_pred HHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 309 LLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 309 L~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
+....-+++.-+...+.+.|+++++.+.
T Consensus 218 ~~a~~ia~~nE~~~l~~~~Gid~~~v~~ 245 (450)
T 3gg2_A 218 MLATRISFMNDVANLCERVGADVSMVRL 245 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 2233445777777778888999876655
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=116.01 Aligned_cols=160 Identities=19% Similarity=0.270 Sum_probs=106.9
Q ss_pred eeecCccc-c--cccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCc
Q 012479 93 IVRGGRDL-F--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (462)
Q Consensus 93 ~~~~~~~~-f--~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (462)
-+|.|+|. + ......+.| +||||||+|+||.++|+.|+.. |++|+++++.. ...+.+.+.|+. .
T Consensus 125 ~~~~g~w~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~-~~~~~~~~~g~~-----~ 191 (330)
T 4e5n_A 125 FVRSGKFRGWQPRFYGTGLDN-ATVGFLGMGAIGLAMADRLQGW------GATLQYHEAKA-LDTQTEQRLGLR-----Q 191 (330)
T ss_dssp HHHTTCCCSCCSCCCCCCSTT-CEEEEECCSHHHHHHHHHTTTS------CCEEEEECSSC-CCHHHHHHHTEE-----E
T ss_pred HHHhCCccccCccccCCccCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCC-CcHhHHHhcCce-----e
Confidence 35677775 2 122367899 9999999999999999999987 99987666543 234556667876 3
Q ss_pred CCHhhhhccCCeEEEeecchh-HHHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecc----
Q 012479 170 GDIYETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC---- 236 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~a-~~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~---- 236 (462)
.+.++++++||+|++++|... ...++. +..+.||+|++|+.++ |-. +..+++..+. ....||....
T Consensus 192 ~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~-gA~lDV~~~E~~~~ 270 (330)
T 4e5n_A 192 VACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLG-GYAADVFEMEDWAR 270 (330)
T ss_dssp CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCGGGCTTC
T ss_pred CCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCcc-EEEecccccccccc
Confidence 589999999999999999654 344554 7889999999998776 321 1222221111 2245666666
Q ss_pred ---cCCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 012479 237 ---PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (462)
Q Consensus 237 ---Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a 277 (462)
|--+.+ .++.. -+.+++||- ..|.++.+.+
T Consensus 271 ~~~Pl~~~~---~L~~~--------~nvilTPHia~~t~e~~~~~ 304 (330)
T 4e5n_A 271 ADRPQQIDP---ALLAH--------PNTLFTPHIGSAVRAVRLEI 304 (330)
T ss_dssp TTCCSSCCH---HHHTC--------SSEEECSSCTTCCHHHHHHH
T ss_pred cCCCCCCCc---hHHcC--------CCEEECCcCCCChHHHHHHH
Confidence 532222 34442 478899987 4555554443
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-10 Score=119.10 Aligned_cols=157 Identities=18% Similarity=0.117 Sum_probs=105.3
Q ss_pred eecCcccccc--------cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec
Q 012479 94 VRGGRDLFNL--------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (462)
Q Consensus 94 ~~~~~~~f~~--------~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (462)
+|.|+|.... ....+.| ++|||||+|.||.++|+.|+.. |.+|+++++...+ ..+.+.|+..
T Consensus 144 ~~~g~w~~~~~~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~- 213 (347)
T 1mx3_A 144 LREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSD--GVERALGLQR- 213 (347)
T ss_dssp HHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCT--THHHHHTCEE-
T ss_pred HHcCCcccccccccccccCccCCCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhHhhcCCee-
Confidence 5677884321 1247899 9999999999999999999988 9998877665433 2345567753
Q ss_pred CCCcCCHhhhhccCCeEEEeecchh-HHHHH-HHHHhcCCCCcEEEEeccch-------HHHhhhccccCCCCccEEecc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~a-~~~vl-~eI~~~Lk~gaiL~~a~G~~-------i~~~~~~~i~~p~~v~VV~v~ 236 (462)
+.+.+|++++||+|++++|+.. ...++ ++..+.||+|++|+.++--. ...+.+..+. ....+|+...
T Consensus 214 ---~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~-gA~lDV~~~E 289 (347)
T 1mx3_A 214 ---VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR-GAALDVHESE 289 (347)
T ss_dssp ---CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE-EEEESCCSSS
T ss_pred ---cCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCc-EEEEeecccC
Confidence 4588999999999999999864 45566 46788999999888665321 1122221111 2346788888
Q ss_pred cCCC-chhhHHhhhcCccccCCCceEEEeeccC-CCHHHHH
Q 012479 237 PKGM-GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (462)
Q Consensus 237 Pngp-g~~vr~lf~~G~~~~G~Gv~aliav~qd-~tgea~e 275 (462)
|..+ .+. ++. --+.+++||-. .+.+..+
T Consensus 290 P~~~~~~~---L~~--------~~nvi~tPHia~~t~~~~~ 319 (347)
T 1mx3_A 290 PFSFSQGP---LKD--------APNLICTPHAAWYSEQASI 319 (347)
T ss_dssp SCCTTSST---TTT--------CSSEEECSSCTTCCHHHHH
T ss_pred CCCCCCch---HHh--------CCCEEEEchHHHHHHHHHH
Confidence 8431 222 222 35788898874 4444443
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-10 Score=115.14 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=107.0
Q ss_pred eeecCccc--cc--ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCC
Q 012479 93 IVRGGRDL--FN--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (462)
Q Consensus 93 ~~~~~~~~--f~--~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (462)
-+|+|+|. .. .....+.| +||||||+|.||.++|+.|+.. |.+|+++++.. ..+.+.+.|+.
T Consensus 155 ~~r~g~~~w~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~----- 220 (365)
T 4hy3_A 155 AFQEGTELWGGEGNASARLIAG-SEIGIVGFGDLGKALRRVLSGF------RARIRVFDPWL--PRSMLEENGVE----- 220 (365)
T ss_dssp HHHHTCCCCSSSSTTSCCCSSS-SEEEEECCSHHHHHHHHHHTTS------CCEEEEECSSS--CHHHHHHTTCE-----
T ss_pred HHHcCCccccccccccccccCC-CEEEEecCCcccHHHHHhhhhC------CCEEEEECCCC--CHHHHhhcCee-----
Confidence 35667743 21 23477999 9999999999999999999887 99987766542 34556677887
Q ss_pred cCCHhhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec-cc------hHHHhhhccccCCCCccEEecccCC
Q 012479 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GF------LLGHLQSMGLDFPKNIGVIAVCPKG 239 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~-~~vl-~eI~~~Lk~gaiL~~a~-G~------~i~~~~~~~i~~p~~v~VV~v~Png 239 (462)
..+.+|++++||+|++++|.... ..++ .+.+..||+|++|+.++ |- .+..+++..+. ...||..-.|--
T Consensus 221 ~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~--aaLDV~~~EPl~ 298 (365)
T 4hy3_A 221 PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV--AASDVYPEEPLP 298 (365)
T ss_dssp ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE--EEESCCSSSSCC
T ss_pred eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce--EEeeCCCCCCCC
Confidence 45899999999999999996644 4556 46888999999998776 32 12233333332 346676666643
Q ss_pred CchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHH
Q 012479 240 MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (462)
Q Consensus 240 pg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~ 276 (462)
+.+. ++. --+++++||- ..+.++.+.
T Consensus 299 ~~~p---L~~--------~~nvilTPHia~~t~e~~~~ 325 (365)
T 4hy3_A 299 LDHP---VRS--------LKGFIRSAHRAGALDSAFKK 325 (365)
T ss_dssp TTCG---GGT--------CTTEEECCSCSSCCHHHHHH
T ss_pred CCCh---hhc--------CCCEEECCccccCHHHHHHH
Confidence 3332 333 2578899987 456655543
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=118.58 Aligned_cols=160 Identities=14% Similarity=0.106 Sum_probs=108.6
Q ss_pred eeecCcccccc---cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCc
Q 012479 93 IVRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (462)
Q Consensus 93 ~~~~~~~~f~~---~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (462)
-+|.|+|.... ....+.| ++|||||+|+||.++|+.|+.. |++|+++++. ....+.+.+.|+.. +
T Consensus 144 ~~~~g~W~~~~~~~~~~~l~g-ktvGIIG~G~IG~~vA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~ 211 (351)
T 3jtm_A 144 QVVKGEWNVAGIAYRAYDLEG-KTIGTVGAGRIGKLLLQRLKPF------GCNLLYHDRL-QMAPELEKETGAKF----V 211 (351)
T ss_dssp HHHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCEEEEECSS-CCCHHHHHHHCCEE----C
T ss_pred HHHcCCCccccccCCcccccC-CEEeEEEeCHHHHHHHHHHHHC------CCEEEEeCCC-ccCHHHHHhCCCeE----c
Confidence 35778996432 2357999 9999999999999999999988 9998766654 33456666778864 5
Q ss_pred CCHhhhhccCCeEEEeecch-hHHHHH-HHHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCC
Q 012479 170 GDIYETISGSDLVLLLISDA-AQADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~-a~~~vl-~eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
.+.+|++++||+|++++|.. ....++ ++.++.||+|++|+.++ |-. +..+++..+. ....||..-.|.-+
T Consensus 212 ~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-ga~lDV~~~EP~~~ 290 (351)
T 3jtm_A 212 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIG-GYSGDVWDPQPAPK 290 (351)
T ss_dssp SCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCSSSSCCT
T ss_pred CCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCcc-EEEeCCCCCCCCCC
Confidence 68999999999999999964 344555 46788899999998776 321 1222221111 23456776667433
Q ss_pred chhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHH
Q 012479 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (462)
Q Consensus 241 g~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~ 276 (462)
.+. ++. =-+.+++||- ..|.++.+.
T Consensus 291 ~~p---L~~--------~~nvilTPHia~~t~ea~~~ 316 (351)
T 3jtm_A 291 DHP---WRY--------MPNQAMTPHTSGTTIDAQLR 316 (351)
T ss_dssp TCG---GGT--------STTBCCCCSCGGGSHHHHHH
T ss_pred CCh---hhc--------CCCEEECCcCCCCCHHHHHH
Confidence 333 332 1357788884 455555544
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-10 Score=115.09 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=82.1
Q ss_pred eeecCcccc-c---ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCC
Q 012479 93 IVRGGRDLF-N---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (462)
Q Consensus 93 ~~~~~~~~f-~---~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (462)
-+|.|+|.. . .....+.| ++|||||+|.||.++|+.|+.. |++|+++++... ..+.+.+.|+..
T Consensus 134 ~~~~~~w~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~g~~~---- 201 (330)
T 2gcg_A 134 EVKNGGWTSWKPLWLCGYGLTQ-STVGIIGLGRIGQAIARRLKPF------GVQRFLYTGRQP-RPEEAAEFQAEF---- 201 (330)
T ss_dssp HHHTTCCCSCCTTSSCBCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCCEEEEESSSC-CHHHHHTTTCEE----
T ss_pred HHHcCCCcccCcccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCc-chhHHHhcCcee----
Confidence 356788853 1 11367899 9999999999999999999988 988877766543 344555667763
Q ss_pred cCCHhhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEecc
Q 012479 169 LGDIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~-~~vl-~eI~~~Lk~gaiL~~a~G 213 (462)
.+.++++++||+|++++|+... ..++ +++.+.|++|++|+.++.
T Consensus 202 -~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~sr 247 (330)
T 2gcg_A 202 -VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISR 247 (330)
T ss_dssp -CCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSC
T ss_pred -CCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCC
Confidence 3888999999999999998654 4555 467788999998876553
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.07 E-value=4.5e-10 Score=114.08 Aligned_cols=110 Identities=17% Similarity=0.113 Sum_probs=82.9
Q ss_pred eeecCc---ccc-c----ccccccCCCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCchhHHHHHHcCce
Q 012479 93 IVRGGR---DLF-N----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (462)
Q Consensus 93 ~~~~~~---~~f-~----~~~~~l~gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (462)
.+|.|+ |.. . .....+.| ++|||||+|.||.++|+.|+ .. |++|++.++.. ...+.+.+.|+.
T Consensus 138 ~~~~g~~~~w~~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~~------G~~V~~~d~~~-~~~~~~~~~g~~ 209 (348)
T 2w2k_A 138 AARTGDPETFNRVHLEIGKSAHNPRG-HVLGAVGLGAIQKEIARKAVHGL------GMKLVYYDVAP-ADAETEKALGAE 209 (348)
T ss_dssp HHTTCCHHHHHHHHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEECSSC-CCHHHHHHHTCE
T ss_pred HHHcCCCcccccccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHhc------CCEEEEECCCC-cchhhHhhcCcE
Confidence 456777 831 1 12367999 99999999999999999999 87 98887666543 334455566776
Q ss_pred ecCCCcCCHhhhhccCCeEEEeecchh-HHHHH-HHHHhcCCCCcEEEEeccc
Q 012479 164 EENGTLGDIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 164 ~~d~~~~~~~eav~~ADvViLavpd~a-~~~vl-~eI~~~Lk~gaiL~~a~G~ 214 (462)
. +.+.++++++||+|++++|+.. ...++ +++.+.|++|++|+.++..
T Consensus 210 ~----~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg 258 (348)
T 2w2k_A 210 R----VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARG 258 (348)
T ss_dssp E----CSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred E----eCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence 4 4478899999999999999865 44565 3677889999988866543
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=117.20 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=105.8
Q ss_pred eeecCccccc----ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCC
Q 012479 93 IVRGGRDLFN----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT 168 (462)
Q Consensus 93 ~~~~~~~~f~----~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (462)
-+|.|+|... .....+.| ++|||||+|+||.++|+.|+.. |.+|+++++...+ .+.+ .|+..
T Consensus 152 ~~r~g~W~~~~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~-~~~~--~g~~~---- 217 (345)
T 4g2n_A 152 MVRSGSWPGWGPTQLLGMGLTG-RRLGIFGMGRIGRAIATRARGF------GLAIHYHNRTRLS-HALE--EGAIY---- 217 (345)
T ss_dssp HHHTTCCCCCCTTTTCBCCCTT-CEEEEESCSHHHHHHHHHHHTT------TCEEEEECSSCCC-HHHH--TTCEE----
T ss_pred HHHcCCCcccCcccccccccCC-CEEEEEEeChhHHHHHHHHHHC------CCEEEEECCCCcc-hhhh--cCCeE----
Confidence 3577888631 22478999 9999999999999999999987 9998776665322 2222 26653
Q ss_pred cCCHhhhhccCCeEEEeecchh-HHHHH-HHHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCC
Q 012479 169 LGDIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKG 239 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a-~~~vl-~eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Png 239 (462)
+.+.+|++++||+|++++|... ...++ ++.++.||+|++|+.++ |-. +..+++..+ .....||.--.| .
T Consensus 218 ~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i-~gA~LDVf~~EP-~ 295 (345)
T 4g2n_A 218 HDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHL-FAAGLDVFANEP-A 295 (345)
T ss_dssp CSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSE-EEEEESCCTTTT-S
T ss_pred eCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCc-eEEEecCCCCCC-C
Confidence 4589999999999999999644 34555 46788999999998776 321 222332111 123567777777 2
Q ss_pred CchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 012479 240 MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (462)
Q Consensus 240 pg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a 277 (462)
+.+ .++. --+++++||- ..|.++.+.+
T Consensus 296 ~~~---pL~~--------~~nvilTPHia~~t~e~~~~~ 323 (345)
T 4g2n_A 296 IDP---RYRS--------LDNIFLTPHIGSATHETRDAM 323 (345)
T ss_dssp CCT---TGGG--------CTTEEECCSCTTCBHHHHHHH
T ss_pred CCc---hHHh--------CCCEEEcCccCcCCHHHHHHH
Confidence 222 2343 2468899986 3455544433
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-10 Score=116.29 Aligned_cols=148 Identities=12% Similarity=0.111 Sum_probs=100.6
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
.|+|+|........+.| ++|||||+|+||.++|+.|+.. |++|+++++...+. +.+ ...+. ..+.+
T Consensus 121 ~~~~~W~~~~~~~~l~g-ktvGIiGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~-~~~~~-----~~~l~ 186 (324)
T 3evt_A 121 RGARQWALPMTTSTLTG-QQLLIYGTGQIGQSLAAKASAL------GMHVIGVNTTGHPA-DHF-HETVA-----FTATA 186 (324)
T ss_dssp TTTCCSSCSSCCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSCCCC-TTC-SEEEE-----GGGCH
T ss_pred HhcCCcccCCCCccccC-CeEEEECcCHHHHHHHHHHHhC------CCEEEEECCCcchh-HhH-hhccc-----cCCHH
Confidence 56789976644578999 9999999999999999999988 99988776653321 111 11111 35788
Q ss_pred hhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhh
Q 012479 174 ETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 174 eav~~ADvViLavpd~a~-~~vl-~eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
|++++||+|++++|.... ..++ ++.+..||+|++|+.++ |-. +..+++..+ .....||....|.-+.+.
T Consensus 187 ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i-~gA~lDV~~~EPl~~~~p- 264 (324)
T 3evt_A 187 DALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQL-SMAALDVTEPEPLPTDHP- 264 (324)
T ss_dssp HHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSC-SEEEESSCSSSSCCTTCG-
T ss_pred HHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCc-eEEEeCCCCCCCCCCCCh-
Confidence 999999999999996543 4555 46888999999998776 321 122222111 123467777777433332
Q ss_pred HHhhhcCccccCCCceEEEeecc
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~q 267 (462)
++. --+.+++||-
T Consensus 265 --L~~--------~~nvilTPHi 277 (324)
T 3evt_A 265 --LWQ--------RDDVLITPHI 277 (324)
T ss_dssp --GGG--------CSSEEECCSC
T ss_pred --hhc--------CCCEEEcCcc
Confidence 444 2477899986
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-09 Score=112.32 Aligned_cols=207 Identities=12% Similarity=0.053 Sum_probs=120.0
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-------------------CceecCCCcCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------GFTEENGTLGD 171 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-------------------G~~~~d~~~~~ 171 (462)
++||+|||+|.||.++|.+|.+. |.|++|++.++. .+..+...+. ++.. +.+
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~----g~g~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~----t~~ 79 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHK----CPHITVTVVDMN-TAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF----SSD 79 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSC-HHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECC-HHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 37999999999999999999887 224677665543 3333333221 1221 346
Q ss_pred HhhhhccCCeEEEeecch---------------hHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhcccc-CC--CCc
Q 012479 172 IYETISGSDLVLLLISDA---------------AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLD-FP--KNI 230 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~---------------a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~-~p--~~v 230 (462)
..+++++||+||+++|.. ...+++++|.+++++|++|++.+.+.. ..+...... .+ ..+
T Consensus 80 ~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~ 159 (481)
T 2o3j_A 80 IPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENL 159 (481)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----C
T ss_pred HHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCC
Confidence 678899999999998753 256788889999999999888655421 111110000 11 123
Q ss_pred c-EEecccC--CCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHHHHHHHHHhCC-Ccccccchhhhccccchhh
Q 012479 231 G-VIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVALGWSVALGS-PFTFATTLEQEYRSDIFGE 305 (462)
Q Consensus 231 ~-VV~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a~al~~aiG~-~~viettf~~E~~~dlfge 305 (462)
+ .|..+|. .|+..+.+++.. -..++.... ..+.++.+.+..++..+|. ..++.++. ...+.-.+-+
T Consensus 160 d~~v~~~Pe~~~~G~a~~~~~~~--------~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~-~~ae~~Kl~~ 230 (481)
T 2o3j_A 160 KFQVLSNPEFLAEGTAMKDLANP--------DRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNT-WSSELSKLVA 230 (481)
T ss_dssp CEEEEECCCCCCTTCHHHHHHSC--------SCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEH-HHHHHHHHHH
T ss_pred ceEEEeCcccccccchhhcccCC--------CEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCH-HHHHHHHHHH
Confidence 3 3567775 455555444432 122232221 1123678889999999985 22222222 2222222323
Q ss_pred hHhHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 306 RGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 306 qtvL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
.+. ....-+++.-+...+.+.|+++++...
T Consensus 231 N~~-~a~~ia~~nE~~~la~~~Gid~~~v~~ 260 (481)
T 2o3j_A 231 NAF-LAQRISSINSISAVCEATGAEISEVAH 260 (481)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 321 222335677777777888998876654
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.5e-10 Score=115.33 Aligned_cols=158 Identities=19% Similarity=0.120 Sum_probs=97.5
Q ss_pred eeecCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC
Q 012479 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (462)
Q Consensus 93 ~~~~~~~~f~~-~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (462)
-+|+|+|.... ....+.| |||||||+|+||..+|+.++.. |++|+++++..... ..++.. ..+
T Consensus 127 ~~~~g~W~~~~~~~~el~g-ktlGiIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~~-----~~~~~~----~~~ 190 (404)
T 1sc6_A 127 KAHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLP-----LGNATQ----VQH 190 (404)
T ss_dssp HHHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-----CTTCEE----CSC
T ss_pred HHHcCCccccCCCccccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEEcCCchhc-----cCCcee----cCC
Confidence 35778896432 2467999 9999999999999999999988 99987766643221 112332 458
Q ss_pred HhhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEeccch-------HHHhhhccccCCCCccEEecccCCCch
Q 012479 172 IYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~-~~vl-~eI~~~Lk~gaiL~~a~G~~-------i~~~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
.+|++++||+|++++|.... ..++ ++.+..||+|++|+.++--. ...+.+..+ -...+||+..+|..+..
T Consensus 191 l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i-~gA~lDVf~~EP~~~~~ 269 (404)
T 1sc6_A 191 LSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHL-AGAAIDVFPTEPATNSD 269 (404)
T ss_dssp HHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSE-EEEEEEC---------C
T ss_pred HHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCc-cEEEEeecCCCCCCccc
Confidence 99999999999999997643 4566 46778899999988765321 112222111 11246788888854331
Q ss_pred h-hHHhhhcCccccCCCceEEEeeccC-CCHHHHH
Q 012479 243 S-VRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (462)
Q Consensus 243 ~-vr~lf~~G~~~~G~Gv~aliav~qd-~tgea~e 275 (462)
. ...++. --+.+++||-. .|.++.+
T Consensus 270 ~~~~pL~~--------~~nvilTPHi~~~T~ea~~ 296 (404)
T 1sc6_A 270 PFTSPLAE--------FDNVLLTPHIGGSTQEAQE 296 (404)
T ss_dssp TTTGGGTT--------CTTEEEECCCSCCSHHHHH
T ss_pred cccchhhc--------CCCEEECCCCCCCcHHHHH
Confidence 1 112333 35788999974 4555443
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-09 Score=106.06 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=101.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC---C--------CcCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---G--------TLGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d---~--------~~~~~~eav~~AD 180 (462)
+||+|||.|+||.++|..|.++ |.+|.+..|.. .+..++.|+...+ + .+.+.+++.+.+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT------GHCVSVVSRSD---YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT------TCEEEEECSTT---HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCh---HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 7999999999999999999999 99988877753 2555556653211 0 1245666666899
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccch-HHHhhhccccCCCCccEEecc------cCCCchhhHHhhhcCc
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-LGHLQSMGLDFPKNIGVIAVC------PKGMGPSVRRLYVQGK 252 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~-i~~~~~~~i~~p~~v~VV~v~------Pngpg~~vr~lf~~G~ 252 (462)
+||++||..+..+++++|.|+++++++ |+...|+. ...+.+ .+|.+ .|+... -..|+.+.. +
T Consensus 74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~---~~~~~-~vl~g~~~~~a~~~~pg~v~~-----~- 143 (320)
T 3i83_A 74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAA---AFPDN-EVISGLAFIGVTRTAPGEIWH-----Q- 143 (320)
T ss_dssp EEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHH---HSTTS-CEEEEEEEEEEEEEETTEEEE-----E-
T ss_pred EEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHH---HCCCC-cEEEEEEEeceEEcCCCEEEE-----C-
Confidence 999999999999999999999999885 56778985 344444 34443 344322 223444421 1
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 253 ~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.|... +......+.+..+.+.+++..-|..
T Consensus 144 ---~~~~~~-ig~~~~~~~~~~~~l~~~l~~~~~~ 174 (320)
T 3i83_A 144 ---AYGRLM-LGNYPGGVSERVKTLAAAFEEAGID 174 (320)
T ss_dssp ---EEEEEE-EEESSSCCCHHHHHHHHHHHHTTSC
T ss_pred ---CCCEEE-EecCCCCccHHHHHHHHHHHhCCCC
Confidence 123322 4333333345666777888888864
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-09 Score=110.34 Aligned_cols=201 Identities=13% Similarity=0.101 Sum_probs=123.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-------------------cC-ceecCCCc
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTL 169 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~d~~~ 169 (462)
|--+|+|||+|.||.++|.+|.+. |++|+++++..++ .+...+ .| +.. +
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~------G~~V~~~D~~~~k-v~~l~~g~~~~~epgl~~~~~~~~~~g~l~~----t 75 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDF------GHEVVCVDKDARK-IELLHQNVMPIYEPGLDALVASNVKAGRLSF----T 75 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCSTT-HHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE----E
T ss_pred CceEEEEEcCCHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHhcCCCCccCCCHHHHHHhhcccCCEEE----E
Confidence 336899999999999999999999 9998877665443 333222 12 232 4
Q ss_pred CCHhhhhccCCeEEEeecch-----------hHHHHHHHHHhcCCCCcEEEEeccchHH-------HhhhccccCCCCcc
Q 012479 170 GDIYETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKNIG 231 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~-----------a~~~vl~eI~~~Lk~gaiL~~a~G~~i~-------~~~~~~i~~p~~v~ 231 (462)
.++.+++++||+||+++|.. ...+++++|.+++++|++|++.+++... .+.+. ....++
T Consensus 76 td~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~--~~~~d~- 152 (446)
T 4a7p_A 76 TDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV--APNSGA- 152 (446)
T ss_dssp SCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH--STTSCC-
T ss_pred CCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh--CCCCCc-
Confidence 67889999999999997644 3678889999999999999888766321 11110 111233
Q ss_pred EEecccCC--CchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCc--ccccchhhhccccchhhhH
Q 012479 232 VIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERG 307 (462)
Q Consensus 232 VV~v~Png--pg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~--viettf~~E~~~dlfgeqt 307 (462)
.|...|.. +|..+++... .+.++ +.. .+.++.+.+..++..++... ++.++-....+.-.+.+.+
T Consensus 153 ~v~~~Pe~a~eG~a~~d~~~---------p~~iv-vG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~ 221 (446)
T 4a7p_A 153 KVVSNPEFLREGAAIEDFKR---------PDRVV-VGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANA 221 (446)
T ss_dssp EEEECCCCCCTTSHHHHHHS---------CSCEE-EEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHH
T ss_pred eEEeCcccccccchhhhccC---------CCEEE-EeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHH
Confidence 34555642 2222221111 22322 232 24688899999998887531 1222212222232343443
Q ss_pred hHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 308 ILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 308 vL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
. ...--+++.-+...+.+.|+++++...
T Consensus 222 ~-~a~~ia~~nE~~~l~~~~GiD~~~v~~ 249 (446)
T 4a7p_A 222 F-LAVKITFINEIADLCEQVGADVQEVSR 249 (446)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2 233445777778888899999976655
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.9e-10 Score=116.38 Aligned_cols=164 Identities=16% Similarity=0.060 Sum_probs=108.1
Q ss_pred eeecCccccc---ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceecCCC
Q 012479 93 IVRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGT 168 (462)
Q Consensus 93 ~~~~~~~~f~---~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~ 168 (462)
-+|.|+|.+. .....+.| ++|||||+|+||.++|+.|+.. |.+ |+++++.. ...+.+.+.|+..
T Consensus 144 ~~~~g~W~~~~~~~~~~~l~g-~tvgIIG~G~IG~~vA~~l~~~------G~~~V~~~d~~~-~~~~~~~~~g~~~---- 211 (364)
T 2j6i_A 144 QIINHDWEVAAIAKDAYDIEG-KTIATIGAGRIGYRVLERLVPF------NPKELLYYDYQA-LPKDAEEKVGARR---- 211 (364)
T ss_dssp HHHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCSEEEEECSSC-CCHHHHHHTTEEE----
T ss_pred HHHhCCCCcCcccCCcccCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCCc-cchhHHHhcCcEe----
Confidence 4567889642 12367999 9999999999999999999988 986 87666543 3345667778764
Q ss_pred cCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cc--h----HHHhhhccccCCCCccEEecccCC
Q 012479 169 LGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GF--L----LGHLQSMGLDFPKNIGVIAVCPKG 239 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~--~----i~~~~~~~i~~p~~v~VV~v~Png 239 (462)
+.+.++++++||+|++++|.... ..++. +..+.||+|++|+.++ |- . +..+++..+. ....||.--.|.-
T Consensus 212 ~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~-gA~LDVf~~EP~~ 290 (364)
T 2j6i_A 212 VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLR-GYGGDVWFPQPAP 290 (364)
T ss_dssp CSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCSSSSCC
T ss_pred cCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCc-EEEEecCCCCCCC
Confidence 45899999999999999998643 45564 6788999999887665 32 1 1222221111 2346777777754
Q ss_pred CchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHH
Q 012479 240 MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 240 pg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e 275 (462)
+.+....+-.. .+-+.+++||- ..|.++.+
T Consensus 291 ~~~pL~~~~~~------~~~nvilTPHia~~t~e~~~ 321 (364)
T 2j6i_A 291 KDHPWRDMRNK------YGAGNAMTPHYSGTTLDAQT 321 (364)
T ss_dssp TTCHHHHCCCT------TSCCEEECCSCGGGSHHHHH
T ss_pred CCChHHhccCC------ccCcEEECCccCcCCHHHHH
Confidence 44433221000 01278899987 34555543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5.2e-09 Score=109.84 Aligned_cols=204 Identities=13% Similarity=0.088 Sum_probs=119.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH---------------H----cCceecCCCcCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---------------A----AGFTEENGTLGD 171 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~---------------~----~G~~~~d~~~~~ 171 (462)
++||+|||+|.||.++|.+|.+. |.|++|++.++. .+..+... + .++.. +.+
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~----g~G~~V~~~d~~-~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~----t~~ 75 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHM----CPEIRVTVVDVN-ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF----STN 75 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSC-HHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred ccEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECC-HHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 47999999999999999999876 224687766554 33232211 1 23432 457
Q ss_pred HhhhhccCCeEEEeecchh---------------HHHHHHHHHhcCCCCcEEEEeccchHH-------HhhhccccCCCC
Q 012479 172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFPKN 229 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a---------------~~~vl~eI~~~Lk~gaiL~~a~G~~i~-------~~~~~~i~~p~~ 229 (462)
+++++++||+||+++|... ..++.++|.+++++|++|++.+.+... .+.+ .....
T Consensus 76 ~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~---~~~~~ 152 (467)
T 2q3e_A 76 IDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDA---NTKPN 152 (467)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHH---TCCTT
T ss_pred HHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHH---hCCCC
Confidence 7889999999999998543 356777899999999988876544211 1111 00112
Q ss_pred cc-EEecccC--CCchhhHHhhhcCccccCCCceEEEee-ccCCCHHHHHHHHHHHHHh-CCCcccccchhhhccccchh
Q 012479 230 IG-VIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAV-HQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYRSDIFG 304 (462)
Q Consensus 230 v~-VV~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~aliav-~qd~tgea~e~a~al~~ai-G~~~viettf~~E~~~dlfg 304 (462)
++ .|...|. .++..+.+++.. -..++.. ....+++..+.+..++..+ |...++.+.. ...+.-.+.
T Consensus 153 ~d~~V~~~Pe~~~~G~~~~d~~~~--------~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~-~~ae~~Kl~ 223 (467)
T 2q3e_A 153 LNLQVLSNPEFLAEGTAIKDLKNP--------DRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNT-WSSELSKLA 223 (467)
T ss_dssp CEEEEEECCCCCCTTSHHHHHHSC--------SCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECH-HHHHHHHHH
T ss_pred CCeEEEeCHHHhhcccchhhccCC--------CEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCH-HHHHHHHHH
Confidence 23 2345554 345554444432 1122331 1113578899999999998 6432222221 111111222
Q ss_pred hhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 305 ERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 305 eqtvL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
+.+. ....-+++.-+...+.+.|+++++...
T Consensus 224 ~N~~-~a~~ia~~nE~~~l~~~~Gid~~~v~~ 254 (467)
T 2q3e_A 224 ANAF-LAQRISSINSISALCEATGADVEEVAT 254 (467)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 3222 222335666667777888999876554
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.6e-09 Score=105.30 Aligned_cols=106 Identities=20% Similarity=0.283 Sum_probs=77.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCC---------CcCCHhhhh
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETI 176 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~---------~~~~~~eav 176 (462)
.++.. +||+|||.|+||.++|..|.++ |++|.++ ++ ++..+...+.|+..... ...+. +.+
T Consensus 15 ~~~~~-~kI~IiGaGa~G~~~a~~L~~~------G~~V~l~-~~-~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 84 (318)
T 3hwr_A 15 LYFQG-MKVAIMGAGAVGCYYGGMLARA------GHEVILI-AR-PQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAV 84 (318)
T ss_dssp ------CEEEEESCSHHHHHHHHHHHHT------TCEEEEE-CC-HHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGG
T ss_pred hhccC-CcEEEECcCHHHHHHHHHHHHC------CCeEEEE-Ec-HhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHc
Confidence 34444 8999999999999999999999 9988777 54 44456666667543100 02334 446
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchH-HHhhh
Q 012479 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL-GHLQS 221 (462)
Q Consensus 177 ~~ADvViLavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i-~~~~~ 221 (462)
+++|+||++||+....+++++|.|+++++++ |+...|+.. ..+.+
T Consensus 85 ~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~ 131 (318)
T 3hwr_A 85 QGADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENADTLRS 131 (318)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHH
T ss_pred CCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHH
Confidence 8999999999999999999999999999986 467889865 34433
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-10 Score=115.13 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=101.8
Q ss_pred eeecCcccc-c--ccc----cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec
Q 012479 93 IVRGGRDLF-N--LLP----DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (462)
Q Consensus 93 ~~~~~~~~f-~--~~~----~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (462)
-+|.|+|.. . ... ..+.| ++|||||+|.||.++|+.|+.. |++|+++++...+ +.+.+.|+..
T Consensus 122 ~~~~g~w~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~- 191 (333)
T 2d0i_A 122 FIRRGEWESHAKIWTGFKRIESLYG-KKVGILGMGAIGKAIARRLIPF------GVKLYYWSRHRKV--NVEKELKARY- 191 (333)
T ss_dssp HHHTTCCCCHHHHHTTSCCCCCSTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCCH--HHHHHHTEEE-
T ss_pred HHHcCCCCcCcccccCCcccCCCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCcee-
Confidence 356778842 1 112 57899 9999999999999999999988 9998776665433 5556667763
Q ss_pred CCCcCCHhhhhccCCeEEEeecch-hHHHHHH-HHHhcCCCCcEEEEec-cchH------HHhhhccccCCCCccEEecc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDA-AQADNYE-KIFSCMKPNSILGLSH-GFLL------GHLQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~-a~~~vl~-eI~~~Lk~gaiL~~a~-G~~i------~~~~~~~i~~p~~v~VV~v~ 236 (462)
.+.++++++||+|++++|.. ....++. ++.+.|++| +|+.++ |..+ ..+.+..+. ....+|....
T Consensus 192 ----~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~-gaglDv~~~E 265 (333)
T 2d0i_A 192 ----MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLK-GYATDVFEKE 265 (333)
T ss_dssp ----CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBC-EEEESCCSSS
T ss_pred ----cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCce-EEEecCCCCC
Confidence 47889999999999999987 4556664 577889999 887665 3211 111110010 1234555444
Q ss_pred cCCCchhhHHhhhcCccccCCCc-eEEEeecc-CCCHHHHH
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGI-NSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv-~aliav~q-d~tgea~e 275 (462)
|. |. ..+|. .. +++++||. ..+.+..+
T Consensus 266 P~-~~---~~L~~--------~~~nviltPh~~~~t~~~~~ 294 (333)
T 2d0i_A 266 PV-RE---HELFK--------YEWETVLTPHYAGLALEAQE 294 (333)
T ss_dssp SC-SC---CGGGG--------CTTTEEECCSCTTCCHHHHH
T ss_pred CC-CC---chHHc--------CCCCEEEcCccCCCcHHHHH
Confidence 52 22 23454 36 78899987 44555443
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-08 Score=106.47 Aligned_cols=193 Identities=11% Similarity=0.086 Sum_probs=115.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH------------------cCceecCCCcCCHh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------------------AGFTEENGTLGDIY 173 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~------------------~G~~~~d~~~~~~~ 173 (462)
+||+|||+|.||.++|..|. . |++|+++++. +...+...+ .++.. +.+++
T Consensus 37 mkIaVIGlG~mG~~lA~~La-~------G~~V~~~D~~-~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~----ttd~~ 104 (432)
T 3pid_A 37 MKITISGTGYVGLSNGVLIA-Q------NHEVVALDIV-QAKVDMLNQKISPIVDKEIQEYLAEKPLNFRA----TTDKH 104 (432)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE----ESCHH
T ss_pred CEEEEECcCHHHHHHHHHHH-c------CCeEEEEecC-HHHhhHHhccCCccccccHHHHHhhccCCeEE----EcCHH
Confidence 89999999999999999886 4 7888765554 433333332 12332 46788
Q ss_pred hhhccCCeEEEeecch-----------hHHHHHHHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccC-
Q 012479 174 ETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPK- 238 (462)
Q Consensus 174 eav~~ADvViLavpd~-----------a~~~vl~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pn- 238 (462)
+++++||+||+++|.. ...++++.|.+ +++|++|++.+.+... .+.+ .+.+. .+...|-
T Consensus 105 ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~---~l~~~--~v~~sPe~ 178 (432)
T 3pid_A 105 DAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKE---RLGID--NVIFSPEF 178 (432)
T ss_dssp HHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHH---HHTCC--CEEECCCC
T ss_pred HHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHH---HHhhc--cEeecCcc
Confidence 9999999999999975 45677888999 9999999888766432 2221 22221 3444775
Q ss_pred -CCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHH--hCCC-cccccchhhhccccchhhhHhHHhHHH
Q 012479 239 -GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA--LGSP-FTFATTLEQEYRSDIFGERGILLGAVH 314 (462)
Q Consensus 239 -gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~a--iG~~-~viettf~~E~~~dlfgeqtvL~G~~p 314 (462)
.|+..+.+... .+. |.+.. +.+..+.+..++.. ++.. .++.+.. .+-+.-.+-+.+.+ ..--
T Consensus 179 ~~~G~A~~~~l~---------p~r-IvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~~-~~AE~~Kl~~N~~~-a~~I 244 (432)
T 3pid_A 179 LREGRALYDNLH---------PSR-IVIGE--RSARAERFADLLKEGAIKQDIPTLFTDS-TEAEAIKLFANTYL-ALRV 244 (432)
T ss_dssp CCTTSHHHHHHS---------CSC-EEESS--CSHHHHHHHHHHHHHCSSSSCCEEECCH-HHHHHHHHHHHHHH-HHHH
T ss_pred CCcchhhhcccC---------Cce-EEecC--CHHHHHHHHHHHHhhhccCCCeEEecCc-cHHHHHHHHHHHHH-HHHH
Confidence 44554433332 122 22233 23566677777775 4432 2333332 22222223333322 3334
Q ss_pred HHHHHHHHHHHHcCCCHHHHHH
Q 012479 315 GIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 315 aliea~~d~~v~~G~~~e~A~~ 336 (462)
+++.-+...+.+.|++.++.+.
T Consensus 245 a~~nEl~~lae~~GiD~~~v~~ 266 (432)
T 3pid_A 245 AYFNELDSYAESQGLNSKQIIE 266 (432)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHH
Confidence 5666667777788888865544
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-09 Score=106.37 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=74.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCC---------CcCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~---------~~~~~~eav~~ADvV 182 (462)
+||+|||+|+||.++|..|.++ |++|.+..|. +..+..++.|+..... ...+.++ ++++|+|
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~------g~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V 74 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALA------GEAINVLARG--ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV 74 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHT------TCCEEEECCH--HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCEEEEEECh--HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence 7999999999999999999999 9888877763 4456666778753110 0235555 6899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEE-EEeccc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGF 214 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~ 214 (462)
|++||+.+..+++++|.|+++++++| +...|+
T Consensus 75 ilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 75 IVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp EECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred EEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 99999999999999999999999865 567785
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-08 Score=106.96 Aligned_cols=200 Identities=14% Similarity=0.115 Sum_probs=119.7
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC--------------------ceecCCCc
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------------FTEENGTL 169 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G--------------------~~~~d~~~ 169 (462)
|-+||+|||+|.||.++|..|.+. |++|+++++. ++..+...+.+ +.. +
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~------G~~V~~~d~~-~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~----t 75 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI------GHDVFCLDVD-QAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF----S 75 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----E
T ss_pred CCceEEEECcCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE----E
Confidence 458999999999999999999999 9988766554 43344443321 121 3
Q ss_pred CCHhhhhccCCeEEEeecc----------hhHHHHHHHHHhcCCCCcEEEEeccchHH-------HhhhccccCC---CC
Q 012479 170 GDIYETISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLDFP---KN 229 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd----------~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~-------~~~~~~i~~p---~~ 229 (462)
.+.++++++||+||++||. ....+++++|.++++++++|+..+++.+. .+.+. +..+ .+
T Consensus 76 td~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~-~~~g~~~~~ 154 (478)
T 2y0c_A 76 TDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEE-LAKRGGDQM 154 (478)
T ss_dssp CCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHH-HHHTTCCCC
T ss_pred CCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHH-hcCCCCCcc
Confidence 5677889999999999997 78888999999999999998877775321 11110 0001 22
Q ss_pred ccEEecccC--CCchhhHHhhhcCccccCCCceEEEeeccCCCH----HHHHHHHHHHHHhCC--Ccccccchhhhcccc
Q 012479 230 IGVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG----RATNVALGWSVALGS--PFTFATTLEQEYRSD 301 (462)
Q Consensus 230 v~VV~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tg----ea~e~a~al~~aiG~--~~viettf~~E~~~d 301 (462)
+. +...|. .||..+.+... .+.++ +..+ ++ +..+.+..+++.++. ..++.+.. ...+.-
T Consensus 155 ~~-v~~~Pe~~~eG~~~~~~~~---------p~~iv-iG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di-~~ae~~ 221 (478)
T 2y0c_A 155 FS-VVSNPEFLKEGAAVDDFTR---------PDRIV-IGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDV-RSAEFT 221 (478)
T ss_dssp EE-EEECCCCCCTTCHHHHHHS---------CSCEE-EECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECH-HHHHHH
T ss_pred EE-EEEChhhhcccceeeccCC---------CCEEE-EEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCH-HHHHHH
Confidence 22 445554 23333222211 22222 2322 23 678888888888763 11222221 122222
Q ss_pred chhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHH
Q 012479 302 IFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 335 (462)
Q Consensus 302 lfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~ 335 (462)
.+.+.+ +....-+++.-+...+.+.|++.++..
T Consensus 222 Kl~~N~-~~a~~ia~~nE~~~la~~~Gid~~~v~ 254 (478)
T 2y0c_A 222 KYAANA-MLATRISFMNELANLADRFGADIEAVR 254 (478)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 222222 122233467777788888999986544
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=112.79 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=102.9
Q ss_pred eecCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 012479 94 VRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (462)
Q Consensus 94 ~~~~~~~f~~-~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (462)
+|+|+|.... ....+.| |+|||||+|+||.++|+.++.. |++|+++++..... ..+... ..+.
T Consensus 139 ~~~g~W~~~~~~~~el~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~yd~~~~~~-----~~~~~~----~~sl 202 (416)
T 3k5p_A 139 AHAGGWEKTAIGSREVRG-KTLGIVGYGNIGSQVGNLAESL------GMTVRYYDTSDKLQ-----YGNVKP----AASL 202 (416)
T ss_dssp HHTTCCCCCCTTCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCCCC-----BTTBEE----CSSH
T ss_pred hhcccccccCCCCccCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCcchhc-----ccCcEe----cCCH
Confidence 5778996543 2468999 9999999999999999999988 99987766542211 123332 5689
Q ss_pred hhhhccCCeEEEeecchhHH-HHH-HHHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchh
Q 012479 173 YETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~~-~vl-~eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
+|++++||+|++++|..... .++ ++.+..||+|++|+.++ |-. +..+++..+ .....||.-..|..+...
T Consensus 203 ~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i-~gAalDVf~~EP~~~~~~ 281 (416)
T 3k5p_A 203 DELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHL-AGAAIDVFPVEPASNGER 281 (416)
T ss_dssp HHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE-EEEEECCCSSCCSSTTSC
T ss_pred HHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCc-cEEEeCCCCCCCCCcccc
Confidence 99999999999999976553 455 36788899999988665 421 122222111 123466777777554321
Q ss_pred h-HHhhhcCccccCCCceEEEeecc-CCCHHHHHH
Q 012479 244 V-RRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (462)
Q Consensus 244 v-r~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~ 276 (462)
. ..++. --+.+++||- ..|.++.+.
T Consensus 282 ~~~pL~~--------~~nvilTPHig~~T~ea~~~ 308 (416)
T 3k5p_A 282 FSTPLQG--------LENVILTPHIGGSTEEAQER 308 (416)
T ss_dssp CCCTTTT--------CTTEEECCSCTTCCHHHHHH
T ss_pred cchhHhc--------CCCEEECCCCCCCCHHHHHH
Confidence 1 11222 2478899994 566665543
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-10 Score=116.89 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=99.9
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
+|+|+|..... ..+.| ++|||||+|+||.++|+.|+.. |++|+++++..... ..+ .+... ..+.+
T Consensus 125 ~~~g~W~~~~~-~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~--~~~~~----~~~l~ 189 (324)
T 3hg7_A 125 QKQRLWQSHPY-QGLKG-RTLLILGTGSIGQHIAHTGKHF------GMKVLGVSRSGRER-AGF--DQVYQ----LPALN 189 (324)
T ss_dssp HHTTCCCCCCC-CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-TTC--SEEEC----GGGHH
T ss_pred HhhCCCcCCCC-ccccc-ceEEEEEECHHHHHHHHHHHhC------CCEEEEEcCChHHh-hhh--hcccc----cCCHH
Confidence 57789976544 78999 9999999999999999999988 99987776653221 111 11121 45789
Q ss_pred hhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhh
Q 012479 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 174 eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
|++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..+++..+ .....||.-..|--+.+.
T Consensus 190 ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i-~ga~lDV~~~EPl~~~~p- 267 (324)
T 3hg7_A 190 KMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKL-GMAVLDVFEQEPLPADSP- 267 (324)
T ss_dssp HHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSS-SEEEESCCSSSSCCTTCT-
T ss_pred HHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCc-eEEEeccCCCCCCCCCCh-
Confidence 999999999999996543 44554 6778899999998776 321 122232111 123467777777443332
Q ss_pred HHhhhcCccccCCCceEEEeecc
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~q 267 (462)
++. --+++++||-
T Consensus 268 --L~~--------~~nvilTPHi 280 (324)
T 3hg7_A 268 --LWG--------QPNLIITPHN 280 (324)
T ss_dssp --TTT--------CTTEEECCSC
T ss_pred --hhc--------CCCEEEeCCC
Confidence 333 2578889886
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-10 Score=115.66 Aligned_cols=147 Identities=13% Similarity=0.096 Sum_probs=99.9
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
+|+|+|.... ...+.| ++|||||+|+||.++|+.|+.. |++|+++++..... .++... ....+.+
T Consensus 124 ~~~g~W~~~~-~~~l~g-~tvGIiG~G~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~~-~~~~~l~ 188 (315)
T 3pp8_A 124 KNQALWKPLP-EYTREE-FSVGIMGAGVLGAKVAESLQAW------GFPLRCWSRSRKSW------PGVESY-VGREELR 188 (315)
T ss_dssp HHTTCCCCCC-CCCSTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEEESSCCCC------TTCEEE-ESHHHHH
T ss_pred HHhcccCCCC-CCCcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCchhh------hhhhhh-cccCCHH
Confidence 4678997664 378999 9999999999999999999988 99988776653321 233210 0124688
Q ss_pred hhhccCCeEEEeecchh-HHHHH-HHHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhh
Q 012479 174 ETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 174 eav~~ADvViLavpd~a-~~~vl-~eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
|++++||+|++++|... ...++ ++.++.||+|++|+.++ |-. +..+++..+. ....||....|--+.+.
T Consensus 189 ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~-gA~lDV~~~EPl~~~~p- 266 (315)
T 3pp8_A 189 AFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLK-GAMLDVFSQEPLPQESP- 266 (315)
T ss_dssp HHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCSSSSCCTTCG-
T ss_pred HHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCcc-EEEcCCCCCCCCCCCCh-
Confidence 99999999999999554 45566 47889999999988776 321 1222221111 23467777777433332
Q ss_pred HHhhhcCccccCCCceEEEeecc
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~q 267 (462)
++. --+++++||-
T Consensus 267 --L~~--------~~nvilTPHi 279 (315)
T 3pp8_A 267 --LWR--------HPRVAMTPHI 279 (315)
T ss_dssp --GGG--------CTTEEECSSC
T ss_pred --hhc--------CCCEEECCCC
Confidence 343 2467889886
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.5e-08 Score=99.54 Aligned_cols=152 Identities=13% Similarity=0.145 Sum_probs=113.5
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHH-----------HHHHcCceecC----------CCc
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN----------GTL 169 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~d----------~~~ 169 (462)
+.||+|||.|.||..+|..+..+ |++|++.+... +..+ ...+.|..... ..+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~------G~~V~l~D~~~-~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~ 78 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASG------GFRVKLYDIEP-RQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC 78 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCCEEEECSCH-HHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE
T ss_pred CCeEEEECCcHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc
Confidence 37999999999999999999999 99998776542 2222 22223322100 014
Q ss_pred CCHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHH
Q 012479 170 GDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~ 246 (462)
.+.+|++++||+||=++|-..- .++|.+|-++++++++| +-++++.+..+.+ .....-+|+..||--|.+.
T Consensus 79 ~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~---~~~~p~r~ig~HffNP~~~--- 152 (319)
T 3ado_A 79 TNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFT---GLAHVKQCIVAHPVNPPYY--- 152 (319)
T ss_dssp CCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHT---TCTTGGGEEEEEECSSTTT---
T ss_pred cchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhh---hccCCCcEEEecCCCCccc---
Confidence 5788899999999999996655 46999999999999987 4677888877765 2233347999999888877
Q ss_pred hhhcCccccCCCceEE-EeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 247 LYVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 247 lf~~G~~~~G~Gv~al-iav~qd~tgea~e~a~al~~aiG~~ 287 (462)
++.+ +.++...+++.++.+.++++.+|..
T Consensus 153 ------------m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~ 182 (319)
T 3ado_A 153 ------------IPLVELVPHPETSPATVDRTHALMRKIGQS 182 (319)
T ss_dssp ------------CCEEEEEECTTCCHHHHHHHHHHHHHTTCE
T ss_pred ------------cchHHhcCCCCCcHHHHHHHHHHHHHhCCc
Confidence 3221 4568889999999999999999964
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.7e-09 Score=103.70 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=74.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-CceecC----------CCcCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN----------GTLGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~d----------~~~~~~~eav~~AD 180 (462)
+||+|||+|.||..+|..|.+. |++|.+.+|..+ ..+...+. |+...+ ....+.+++++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 77 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDIDAQ-RIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 77 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHH-HHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence 7999999999999999999998 988877665433 34444444 432100 01457788899999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+||+++|+..+.++++++.++++++++|++..|+
T Consensus 78 ~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~~ 111 (359)
T 1bg6_A 78 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 111 (359)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCCC
Confidence 9999999999999999999999999987766663
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-09 Score=108.64 Aligned_cols=160 Identities=13% Similarity=0.016 Sum_probs=102.6
Q ss_pred eeecCccccc-ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC
Q 012479 93 IVRGGRDLFN-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (462)
Q Consensus 93 ~~~~~~~~f~-~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (462)
-+|+|+|... .....+.| ++|||||+|+||.++|+.|+.. |.+|+++++...+. +.+ ++.. ..+
T Consensus 128 ~~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~~~-~~~~----~~~ 192 (333)
T 1j4a_A 128 KVARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNPE---LEK-KGYY----VDS 192 (333)
T ss_dssp HHHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCHH---HHH-TTCB----CSC
T ss_pred HHHcCCCccCCcccccCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcchh---HHh-hCee----cCC
Confidence 3467777432 22467999 9999999999999999999988 99987766654332 222 3332 337
Q ss_pred HhhhhccCCeEEEeecchh-HHHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCC--C
Q 012479 172 IYETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKG--M 240 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a-~~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Png--p 240 (462)
.++++++||+|++++|... ...++. +..+.||+|++|+.++ |-. +..+++..+. ....||+--.|.. +
T Consensus 193 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~-gA~LDV~~~EP~~l~~ 271 (333)
T 1j4a_A 193 LDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF-GYAMDVYEGEVGIFNE 271 (333)
T ss_dssp HHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCTTCTTTTTS
T ss_pred HHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCce-EEEEecCCCCCCcccc
Confidence 8999999999999999764 345563 5778899999887665 321 1122221111 2346777777731 1
Q ss_pred ch--------hhHHhhhcCccccCCCceEEEeecc-CCCHHHHHH
Q 012479 241 GP--------SVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (462)
Q Consensus 241 g~--------~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~ 276 (462)
.+ ....++.. -+.+++||- ..|.++.+.
T Consensus 272 ~~~~~~~~~p~~~~L~~~--------~nvilTPHia~~t~~~~~~ 308 (333)
T 1j4a_A 272 DWEGKEFPDARLADLIAR--------PNVLVTPKTAFYTTHAVRN 308 (333)
T ss_dssp BCTTSCCSCHHHHHHHHC--------TTEEECSSCTTCBHHHHHH
T ss_pred ccccccCCccchhhHHhC--------CCEEECCccccCHHHHHHH
Confidence 11 11235542 477889987 345554433
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.3e-09 Score=110.83 Aligned_cols=156 Identities=17% Similarity=0.056 Sum_probs=101.7
Q ss_pred cCcccc--cccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 96 GGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 96 ~~~~~f--~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
+|+|.+ ......+.| ++|||||+|+||.++|+.|+.. |.+|+++++...+ ..+.++. ..+.+
T Consensus 132 ~g~~~w~~~~~~~~l~g-ktvgIiGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~----~~~~~~~-----~~~l~ 195 (343)
T 2yq5_A 132 DHDFTWPSNLISNEIYN-LTVGLIGVGHIGSAVAEIFSAM------GAKVIAYDVAYNP----EFEPFLT-----YTDFD 195 (343)
T ss_dssp HCCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCG----GGTTTCE-----ECCHH
T ss_pred cCCcccccCCCccccCC-CeEEEEecCHHHHHHHHHHhhC------CCEEEEECCChhh----hhhcccc-----ccCHH
Confidence 555433 233578999 9999999999999999999988 9998777665432 1223343 35899
Q ss_pred hhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCC-Cch-
Q 012479 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKG-MGP- 242 (462)
Q Consensus 174 eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Png-pg~- 242 (462)
|++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..+++.. ......||..-.|.. |..
T Consensus 196 ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~-i~gA~LDV~~~EP~~~~~~~ 274 (343)
T 2yq5_A 196 TVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGE-IAGAGLDTLAGESSYFGHTG 274 (343)
T ss_dssp HHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTS-SSCEEESCCTTGGGTTTCCS
T ss_pred HHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCC-CcEEEecccccCCCcccccc
Confidence 999999999999996433 44553 6788899999998776 321 12223211 223456777777731 110
Q ss_pred -------h-hHHhhhcCccccCCCceEEEeecc-CCCHHHHHH
Q 012479 243 -------S-VRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (462)
Q Consensus 243 -------~-vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~ 276 (462)
. ...++. --+++++||- ..|.++.+.
T Consensus 275 ~~~~~l~~~~~pL~~--------~~nvilTPHia~~t~ea~~~ 309 (343)
T 2yq5_A 275 LTDSEIPEDYKTLAK--------MPNVVITPHSAFYTETSIRN 309 (343)
T ss_dssp CCTTTSCHHHHHHTT--------CTTEEECSSCTTCBHHHHHH
T ss_pred ccccccccchhHHhc--------CCCEEECCccccchHHHHHH
Confidence 0 123444 2578899987 455555443
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.2e-08 Score=99.34 Aligned_cols=201 Identities=9% Similarity=0.016 Sum_probs=109.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC--------------CCcCCHhhhhc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--------------GTLGDIYETIS 177 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d--------------~~~~~~~eav~ 177 (462)
|||+|||+|.||.++|..|.+ |++|++.++. .+..+...+.|....+ ....+..++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-------G~~V~~~d~~-~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~ 72 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-------QNEVTIVDIL-PSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK 72 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEECSC-HHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhC-------CCEEEEEECC-HHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc
Confidence 589999999999999999863 6777665544 4434444444431000 01346778899
Q ss_pred cCCeEEEeecch-----------hHHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccC--CCc
Q 012479 178 GSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPK--GMG 241 (462)
Q Consensus 178 ~ADvViLavpd~-----------a~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pn--gpg 241 (462)
+||+||+++|+. ...+++++|.+ ++++++|++.+... ...+.+ .++++ .|...|. .|+
T Consensus 73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~---~~~~~--~v~~~Pe~~~~G 146 (402)
T 1dlj_A 73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQ---KFQTD--RIIFSPEFLRES 146 (402)
T ss_dssp HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHH---HTTCS--CEEECCCCCCTT
T ss_pred CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHH---HhCCC--eEEECCccccCc
Confidence 999999999987 47788899999 99999887743332 223322 33443 4445564 344
Q ss_pred hhhHHhhhcCccccCCCceEEEeeccCC---CHHHHHHHHHHHHHhCCC---cccccchhhhccccchhhhHhHHhHHHH
Q 012479 242 PSVRRLYVQGKEINGAGINSSFAVHQDV---DGRATNVALGWSVALGSP---FTFATTLEQEYRSDIFGERGILLGAVHG 315 (462)
Q Consensus 242 ~~vr~lf~~G~~~~G~Gv~aliav~qd~---tgea~e~a~al~~aiG~~---~viettf~~E~~~dlfgeqtvL~G~~pa 315 (462)
..+.+.... +. .++....+. ..+..+.+..++..-+.. .++.+... ..+.-.+-+.+. ...--+
T Consensus 147 ~a~~~~~~~-------~r-iviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~-~ae~~Kl~~N~~-~a~~ia 216 (402)
T 1dlj_A 147 KALYDNLYP-------SR-IIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGAS-EAEAVKLFANTY-LALRVA 216 (402)
T ss_dssp STTHHHHSC-------SC-EEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHH-HHHHHHHHHHHH-HHHHHH
T ss_pred chhhcccCC-------CE-EEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChH-HHHHHHHHHHHH-HHHHHH
Confidence 433332221 11 222322111 114445556666543321 12222211 111111212221 122234
Q ss_pred HHHHHHHHHHHcCCCHHHHHH
Q 012479 316 IVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 316 liea~~d~~v~~G~~~e~A~~ 336 (462)
++.-+...+.+.|++.++...
T Consensus 217 ~~nE~~~l~~~~Gid~~~v~~ 237 (402)
T 1dlj_A 217 YFNELDTYAESRKLNSHMIIQ 237 (402)
T ss_dssp HHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHH
Confidence 666667777788888876554
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-09 Score=108.61 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=78.4
Q ss_pred eeecCcccc--cccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC
Q 012479 93 IVRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (462)
Q Consensus 93 ~~~~~~~~f--~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (462)
-+|+|+|.+ ......+.| ++|||||+|.||.++|+.|+.. |.+|+++++...+. + +.++. ..
T Consensus 126 ~~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~-----~~ 189 (333)
T 1dxy_A 126 QLQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG---D-HPDFD-----YV 189 (333)
T ss_dssp HHHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS---C-CTTCE-----EC
T ss_pred HHHcCCcccccCCCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCcchh---h-Hhccc-----cC
Confidence 356777743 223468999 9999999999999999999988 99987766654332 1 12233 35
Q ss_pred CHhhhhccCCeEEEeecchhH-HHHH-HHHHhcCCCCcEEEEec
Q 012479 171 DIYETISGSDLVLLLISDAAQ-ADNY-EKIFSCMKPNSILGLSH 212 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~-~~vl-~eI~~~Lk~gaiL~~a~ 212 (462)
+.++++++||+|++++|.... ..++ ++..+.||+|++|+.++
T Consensus 190 ~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~s 233 (333)
T 1dxy_A 190 SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTA 233 (333)
T ss_dssp CHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred CHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECC
Confidence 889999999999999997654 4556 46778899999988665
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.5e-09 Score=107.85 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=102.8
Q ss_pred eeecCcccc--cccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC
Q 012479 93 IVRGGRDLF--NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (462)
Q Consensus 93 ~~~~~~~~f--~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (462)
-+|+|+|.. ......+.| ++|||||+|.||.++|+.|+.. |.+|+++++...+. + +.++. ..
T Consensus 127 ~~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~~-----~~ 190 (331)
T 1xdw_A 127 RTAKKNFKVDAFMFSKEVRN-CTVGVVGLGRIGRVAAQIFHGM------GATVIGEDVFEIKG---I-EDYCT-----QV 190 (331)
T ss_dssp HHTTTCCCCCSTTCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCS---C-TTTCE-----EC
T ss_pred HHHcCCCccccCcCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCccHH---H-Hhccc-----cC
Confidence 346778753 222367999 9999999999999999999988 99987776654332 1 12333 35
Q ss_pred CHhhhhccCCeEEEeecchh-HHHHH-HHHHhcCCCCcEEEEeccch-------HHHhhhccccCCCCccEEecccCC-C
Q 012479 171 DIYETISGSDLVLLLISDAA-QADNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSMGLDFPKNIGVIAVCPKG-M 240 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a-~~~vl-~eI~~~Lk~gaiL~~a~G~~-------i~~~~~~~i~~p~~v~VV~v~Png-p 240 (462)
+.++++++||+|++++|... ...++ ++..+.||+|++|+.++--. +..+++..+. ....||+-..|.. |
T Consensus 191 ~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~-gA~LDV~~~EP~~~~ 269 (331)
T 1xdw_A 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLG-GYGCDVLDGEASVFG 269 (331)
T ss_dssp CHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCTTGGGTTT
T ss_pred CHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCce-EEEEecCCCCCCccc
Confidence 88999999999999999754 34555 36778899999988765221 1122221111 2346777777731 1
Q ss_pred ---------chhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHH
Q 012479 241 ---------GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (462)
Q Consensus 241 ---------g~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~ 276 (462)
.+....++.- .-+.+++||- ..|.++.+.
T Consensus 270 ~~~~~~~~~~~~~~~L~~~-------~~nvilTPHia~~t~~~~~~ 308 (331)
T 1xdw_A 270 KDLEGQKLENPLFEKLVDL-------YPRVLITPHLGSYTDEAVKN 308 (331)
T ss_dssp CCCTTSCCSSHHHHHHHHT-------TTTEEECCSCTTCSHHHHHH
T ss_pred ccccccccCccchHHHHhC-------CCCEEEcCccccChHHHHHH
Confidence 1111234441 1378889987 345555443
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-07 Score=98.72 Aligned_cols=201 Identities=19% Similarity=0.181 Sum_probs=121.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCch---hHHHHHH---------------------cC-cee
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR---SFAEARA---------------------AG-FTE 164 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~---s~~~A~~---------------------~G-~~~ 164 (462)
++||+|||+|.||.++|.+|.+. .|+ +|+++++..++ ..+...+ .| +..
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~-----~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ 92 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADA-----PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC 92 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHS-----TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-----CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE
Confidence 48999999999999999999865 167 88776665440 2222111 22 221
Q ss_pred cCCCcCCHhhhhccCCeEEEeecchh------------HHHHHHHHHhcCCCCcEEEEeccchHHH--------h-hhcc
Q 012479 165 ENGTLGDIYETISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLGH--------L-QSMG 223 (462)
Q Consensus 165 ~d~~~~~~~eav~~ADvViLavpd~a------------~~~vl~eI~~~Lk~gaiL~~a~G~~i~~--------~-~~~~ 223 (462)
+.+ .+++++||+||+++|... ...+.+.|.+++++|++|++.+++.... + +..+
T Consensus 93 ----ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g 167 (478)
T 3g79_A 93 ----TPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESG 167 (478)
T ss_dssp ----ESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHC
T ss_pred ----eCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcC
Confidence 234 788999999999998653 3456678999999999998887663211 1 1111
Q ss_pred ccCCCCccEEecccC--CCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHh-CCCcccccchhhhccc
Q 012479 224 LDFPKNIGVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTLEQEYRS 300 (462)
Q Consensus 224 i~~p~~v~VV~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~ai-G~~~viettf~~E~~~ 300 (462)
.....++ .+...|. .+|..+.+... .+.++ ... +.+..+.+..++..+ +...+..++ ...-+.
T Consensus 168 ~~~~~d~-~v~~~Pe~~~~G~a~~~~~~---------~~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~-~~~aE~ 233 (478)
T 3g79_A 168 LKAGEDF-ALAHAPERVMVGRLLKNIRE---------HDRIV-GGI--DEASTKRAVELYSPVLTVGQVIPMS-ATAAEV 233 (478)
T ss_dssp CCBTTTB-EEEECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHGGGCSSCCEEEEE-HHHHHH
T ss_pred CCcCCce-eEEeCCccCCccchhhhhcC---------CcEEE-EeC--CHHHHHHHHHHHhhhccCCeEEeCC-HHHHHH
Confidence 1111222 3556674 45555433332 23333 233 567789999999999 654222222 222222
Q ss_pred cchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 301 DIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 301 dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
-.+-+++.+ ..--+++.-+...+.+.|++.++.+.
T Consensus 234 ~Kl~~N~~~-a~~Ia~~nE~~~l~e~~GiD~~~v~~ 268 (478)
T 3g79_A 234 TKTAENTFR-DLQIAAINQLALYCEAMGINVYDVRT 268 (478)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 223333322 33345777777888889999976655
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-08 Score=103.24 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=70.3
Q ss_pred CEEEEEcccchHHHHHHHHHH-hhhhhcCCcEEEEEec--CCchhHHHH-HHcCceec----CC-----------CcCCH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLR--KGSRSFAEA-RAAGFTEE----NG-----------TLGDI 172 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrd-s~~~~g~G~~Vivg~r--~~~~s~~~A-~~~G~~~~----d~-----------~~~~~ 172 (462)
|||+|||.|+||.++|..|.+ + |++|.++.+ .+.+..+.+ ++.|+... ++ ...++
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~------G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRD------GVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP 76 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTST------TEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred ceEEEECCCHHHHHHHHHHHhCC------CCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence 799999999999999999976 6 888877661 223334442 33331100 00 13567
Q ss_pred hhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+++++++|+||++||+....+++++|.++++++++|+..
T Consensus 77 ~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 77 EIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp HHHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEET
T ss_pred HHHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEc
Confidence 788999999999999999999999999999999887663
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-07 Score=96.23 Aligned_cols=202 Identities=11% Similarity=0.108 Sum_probs=120.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh-------------
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET------------- 175 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea------------- 175 (462)
.| .|+.|||+|.||.++|.+|.+. |++|+++++. ++..+... .|.... .....+|+
T Consensus 10 ~~-~~~~ViGlGyvGlp~A~~La~~------G~~V~~~D~~-~~kv~~L~-~g~~pi--~epgl~~ll~~~~~~g~l~~t 78 (431)
T 3ojo_A 10 HG-SKLTVVGLGYIGLPTSIMFAKH------GVDVLGVDIN-QQTIDKLQ-NGQISI--EEPGLQEVYEEVLSSGKLKVS 78 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHH-TTCCSS--CCTTHHHHHHHHHHTTCEEEE
T ss_pred cC-CccEEEeeCHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHH-CCCCCc--CCCCHHHHHHhhcccCceEEe
Confidence 45 8999999999999999999999 9998766655 33333332 232110 00011110
Q ss_pred --hccCCeEEEeecchh------------HHHHHHHHHhcCCCCcEEEEeccchHH---Hh-----hhccccCCCCccEE
Q 012479 176 --ISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLG---HL-----QSMGLDFPKNIGVI 233 (462)
Q Consensus 176 --v~~ADvViLavpd~a------------~~~vl~eI~~~Lk~gaiL~~a~G~~i~---~~-----~~~~i~~p~~v~VV 233 (462)
+++||+||+|||... ...+.+.|.+++++|++|++.+++... .+ ++.+.....++ .+
T Consensus 79 td~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~-~v 157 (431)
T 3ojo_A 79 TTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDI-YL 157 (431)
T ss_dssp SSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTE-EE
T ss_pred CchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCe-EE
Confidence 458999999999665 345667899999999998888776321 11 11111112232 35
Q ss_pred ecccC--CCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHh
Q 012479 234 AVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311 (462)
Q Consensus 234 ~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G 311 (462)
...|. .||..+.+... .+.++ ... +.+..+.+..+++.++...++.++. ..-+.-.+-+++.+ .
T Consensus 158 ~~~Pe~~~~G~A~~~~~~---------p~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~-~~AE~~Kl~~N~~~-a 223 (431)
T 3ojo_A 158 VHCPERVLPGKILEELVH---------NNRII-GGV--TKACIEAGKRVYRTFVQGEMIETDA-RTAEMSKLMENTYR-D 223 (431)
T ss_dssp EECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHTTTCCSCEEEEEH-HHHHHHHHHHHHHH-H
T ss_pred EECCCcCCCcchhhcccC---------CCEEE-EeC--CHHHHHHHHHHHHHHhCCcEEeCCH-HHHHHHHHHHHHHH-H
Confidence 56663 44554433322 33433 343 5789999999999998653333332 22222233344333 3
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 312 AVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 312 ~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
.--+++.-+...+.+.|++.++...
T Consensus 224 ~~Ia~~nE~~~l~e~~GiD~~~v~~ 248 (431)
T 3ojo_A 224 VNIALANELTKICNNLNINVLDVIE 248 (431)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3345777777888888999876554
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.2e-08 Score=96.55 Aligned_cols=119 Identities=20% Similarity=0.131 Sum_probs=83.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCC------cCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT------LGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~------~~~~~eav~~ADvViLa 185 (462)
|||+|||+|+||.++|..|. + |.+|.+..|.. ...+..++.|+...... .....++++.+|+||++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~------g~~V~~~~r~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vila 74 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-L------YHDVTVVTRRQ-EQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVT 74 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCH-HHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHh-c------CCceEEEECCH-HHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEE
Confidence 79999999999999999999 8 98988776653 33445556687641100 00013467789999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccchHH-HhhhccccCCCCccEEec------ccCCCchh
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSMGLDFPKNIGVIAV------CPKGMGPS 243 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~-~~~~~~i~~p~~v~VV~v------~Pngpg~~ 243 (462)
||+.+..++++++.+. .++++|++..|+... .+.+ .+|.+ +|+.. ...+|+++
T Consensus 75 vK~~~~~~~l~~l~~~-~~~~ivs~~nGi~~~e~l~~---~~~~~-~vl~g~~~~~a~~~~pg~v 134 (307)
T 3ego_A 75 VKQHQLQSVFSSLERI-GKTNILFLQNGMGHIHDLKD---WHVGH-SIYVGIVEHGAVRKSDTAV 134 (307)
T ss_dssp CCGGGHHHHHHHTTSS-CCCEEEECCSSSHHHHHHHT---CCCSC-EEEEEEECCEEEECSSSEE
T ss_pred eCHHHHHHHHHHhhcC-CCCeEEEecCCccHHHHHHH---hCCCC-cEEEEEEeeceEECCCCEE
Confidence 9999999999999875 566677788999764 4443 34443 44433 23456655
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.69 E-value=4e-08 Score=87.28 Aligned_cols=110 Identities=7% Similarity=-0.027 Sum_probs=79.8
Q ss_pred CEEEEEcc----cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
++|+|||. |+||..++++|++. |++|+..+.+..+ -.|... ..++.|+.+..|++++++|
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~------G~~V~~vnp~~~~------i~G~~~----~~s~~el~~~vDlvii~vp 78 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNYDE------IEGLKC----YRSVRELPKDVDVIVFVVP 78 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTCSE------ETTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHC------CCEEEEeCCCCCe------ECCeee----cCCHHHhCCCCCEEEEEeC
Confidence 89999999 99999999999998 9885444333211 157764 5688998889999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchh
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
++.+.++++++.. ...+.++.+++++.-...+. .-..++.+| -||+++-.
T Consensus 79 ~~~v~~v~~~~~~-~g~~~i~~~~~~~~~~l~~~---a~~~Gi~~i--gpnc~g~~ 128 (138)
T 1y81_A 79 PKVGLQVAKEAVE-AGFKKLWFQPGAESEEIRRF---LEKAGVEYS--FGRCIMVE 128 (138)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEECTTSCCHHHHHH---HHHHTCEEE--CSCCHHHH
T ss_pred HHHHHHHHHHHHH-cCCCEEEEcCccHHHHHHHH---HHHCCCEEE--cCCcceEE
Confidence 9999999998766 45566777777764222111 112356665 49988765
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-08 Score=98.93 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=72.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.++| ++|+|||+|.||.+++.+|.+. |.+|.+.+|+.++..+.+.+.|+.. ..+..++++++|+||++|
T Consensus 126 ~~~~-~~v~iiGaG~~g~aia~~L~~~------g~~V~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDiVi~at 194 (275)
T 2hk9_A 126 EVKE-KSILVLGAGGASRAVIYALVKE------GAKVFLWNRTKEKAIKLAQKFPLEV----VNSPEEVIDKVQVIVNTT 194 (275)
T ss_dssp TGGG-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSHHHHHHHTTTSCEEE----CSCGGGTGGGCSEEEECS
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHcCCee----ehhHHhhhcCCCEEEEeC
Confidence 4678 9999999999999999999998 8888887776544445555556553 347788899999999999
Q ss_pred cchhHHHHHHHH-HhcCCCCcEEEEecc
Q 012479 187 SDAAQADNYEKI-FSCMKPNSILGLSHG 213 (462)
Q Consensus 187 pd~a~~~vl~eI-~~~Lk~gaiL~~a~G 213 (462)
|+....++...+ .+.+++|++|+++..
T Consensus 195 p~~~~~~~~~~i~~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 195 SVGLKDEDPEIFNYDLIKKDHVVVDIIY 222 (275)
T ss_dssp STTSSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence 988653211112 356788988877655
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-08 Score=105.14 Aligned_cols=139 Identities=15% Similarity=0.108 Sum_probs=93.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|||||+|+||.++|+.|+.. |++|+++++.. .. ...|.. ..+.+|++++||+|+++
T Consensus 112 ~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~----~~-~~~g~~-----~~~l~ell~~aDvV~l~ 174 (380)
T 2o4c_A 112 ADLAE-RTYGVVGAGQVGGRLVEVLRGL------GWKVLVCDPPR----QA-REPDGE-----FVSLERLLAEADVISLH 174 (380)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHH----HH-HSTTSC-----CCCHHHHHHHCSEEEEC
T ss_pred cccCC-CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCCh----hh-hccCcc-----cCCHHHHHHhCCEEEEe
Confidence 46889 9999999999999999999988 99987665421 11 123433 46899999999999999
Q ss_pred ecchhH-----HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCc
Q 012479 186 ISDAAQ-----ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (462)
Q Consensus 186 vpd~a~-----~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~ 252 (462)
+|.... ..++. ++.+.||+|++|+.++ |-. +..+.+..+ .....||....|. |... ++.
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i-~~A~LDV~~~EP~-~~~~---l~~--- 246 (380)
T 2o4c_A 175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGAD-LEVALDVWEGEPQ-ADPE---LAA--- 246 (380)
T ss_dssp CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCC-EEEEESCCTTTTS-CCHH---HHT---
T ss_pred ccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCC-ceEEeeeeccCCC-Cchh---hcc---
Confidence 997664 45554 6788999999988665 321 112222111 1234677777783 3322 332
Q ss_pred cccCCCceEEEeecc-CCCHHHHH
Q 012479 253 EINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 253 ~~~G~Gv~aliav~q-d~tgea~e 275 (462)
.+.+++||- ..|.+..+
T Consensus 247 ------~nvi~TPHiag~t~e~~~ 264 (380)
T 2o4c_A 247 ------RCLIATPHIAGYSLEGKL 264 (380)
T ss_dssp ------TCSEECSSCTTCCHHHHH
T ss_pred ------CCEEEccccCcCCHHHHH
Confidence 366789986 45555433
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-08 Score=104.33 Aligned_cols=150 Identities=16% Similarity=0.138 Sum_probs=98.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|||||+|+||.++|+.|+.. |++|+++++. .+. ...+.. ..+.+|++++||+|+++
T Consensus 115 ~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~----~~~-~~~~~~-----~~sl~ell~~aDiV~l~ 177 (381)
T 3oet_A 115 FSLRD-RTIGIVGVGNVGSRLQTRLEAL------GIRTLLCDPP----RAA-RGDEGD-----FRTLDELVQEADVLTFH 177 (381)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHH----HHH-TTCCSC-----BCCHHHHHHHCSEEEEC
T ss_pred CccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCC----hHH-hccCcc-----cCCHHHHHhhCCEEEEc
Confidence 46789 9999999999999999999988 9998766542 111 112322 56899999999999999
Q ss_pred ecchhH-----HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCc
Q 012479 186 ISDAAQ-----ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (462)
Q Consensus 186 vpd~a~-----~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~ 252 (462)
+|.... ..++. +....||+|++|+.++ |-. +..+++.. ......||.--.|. |.. .++.
T Consensus 178 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~-i~gA~LDV~e~EP~-~~~---~L~~--- 249 (381)
T 3oet_A 178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQ-PLSVVLDVWEGEPD-LNV---ALLE--- 249 (381)
T ss_dssp CCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTC-CEEEEESCCTTTTS-CCH---HHHH---
T ss_pred CcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCC-CeEEEeeccccCCC-Ccc---hhhh---
Confidence 996543 34553 6778899999998776 321 12222211 11235677777774 322 2443
Q ss_pred cccCCCceEEEeecc-CCCHHHHHH-----HHHHHHHhCC
Q 012479 253 EINGAGINSSFAVHQ-DVDGRATNV-----ALGWSVALGS 286 (462)
Q Consensus 253 ~~~G~Gv~aliav~q-d~tgea~e~-----a~al~~aiG~ 286 (462)
.+.+++||- ..|.++.+. +..+..-++.
T Consensus 250 ------~~~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~ 283 (381)
T 3oet_A 250 ------AVDIGTSHIAGYTLEGKARGTTQVFEAYSAFIGR 283 (381)
T ss_dssp ------HSSEECSSCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------CCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence 235688887 455555443 3445555654
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.7e-06 Score=84.48 Aligned_cols=181 Identities=16% Similarity=0.199 Sum_probs=132.7
Q ss_pred HcCceecCCCcCCHhhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccch---HH-HhhhccccCCCCccEE
Q 012479 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LG-HLQSMGLDFPKNIGVI 233 (462)
Q Consensus 159 ~~G~~~~d~~~~~~~eav~~ADvViLavpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~~---i~-~~~~~~i~~p~~v~VV 233 (462)
+.|+.+ +.|..|+++++|++|+=+|-.. +.++.++|.+++++|++|+.++=++ +. .++. .. ++|+.|.
T Consensus 126 daGVkV----tsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~--l~-R~DvgIs 198 (358)
T 2b0j_A 126 DVGLKV----TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKD--LG-REDLNIT 198 (358)
T ss_dssp GGTCEE----ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHH--TT-CTTSEEE
T ss_pred HcCcEe----ecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHH--hC-cccCCee
Confidence 368876 6788899999999999999766 8899999999999999999887653 22 2222 23 7899999
Q ss_pred ecccCC-CchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC-cccccchhhhccccchhhhHhHHh
Q 012479 234 AVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLG 311 (462)
Q Consensus 234 ~v~Png-pg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~-~viettf~~E~~~dlfgeqtvL~G 311 (462)
..||-+ |+.. |-.. +. ..-+++++++....|++..|.. +++ ..|+.+..+-++-
T Consensus 199 S~HPaaVPgt~--------------Gq~~-~g-~~yAtEEqIeklveLaksa~k~ay~v--------PAdl~SpV~DMgs 254 (358)
T 2b0j_A 199 SYHPGCVPEMK--------------GQVY-IA-EGYASEEAVNKLYEIGKIARGKAFKM--------PANLIGPVCDMCS 254 (358)
T ss_dssp ECBCSSCTTTC--------------CCEE-EE-ESSSCHHHHHHHHHHHHHHHSCEEEE--------EHHHHHHHHSTTH
T ss_pred ccCCCCCCCCC--------------Cccc-cc-cccCCHHHHHHHHHHHHHhCCCeEec--------chhhccchhhhHH
Confidence 999953 4432 3333 33 5678999999999999999975 222 2234444444433
Q ss_pred HHHH----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchh
Q 012479 312 AVHG----IVESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (462)
Q Consensus 312 ~~pa----liea~~d~~v~-~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~ 373 (462)
.+.+ .+..-++...+ .|-|.+++-+.+.+++.. ++.|+...|+..|.+.+.. .+--+.+
T Consensus 255 ~vTAv~~AGiL~Y~~~vtkIlgAP~~mie~q~~esL~t-iasLve~~GI~gm~k~LnP--~aL~~sA 318 (358)
T 2b0j_A 255 AVTATVYAGLLAYRDAVTKILGAPADFAQMMADEALTQ-IHNLMKEKGIANMEEALDP--AALLGTA 318 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HHHHHHHHCGGGHHHHSCG--GGGGGTG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcCH--HHHHhHH
Confidence 4444 34444555544 599999999999999995 9999999999999999874 3334443
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.4e-08 Score=97.96 Aligned_cols=104 Identities=19% Similarity=0.114 Sum_probs=77.4
Q ss_pred eecCcccccc--cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC
Q 012479 94 VRGGRDLFNL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (462)
Q Consensus 94 ~~~~~~~f~~--~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (462)
++.|+|.... ....+.| ++|||||+|.+|..+|+.++.. |.+|+++++... +...+.|+. ..+
T Consensus 123 ~~~~~~~~~~~~~~~~l~g-~tvGIiG~G~IG~~va~~~~~f------g~~v~~~d~~~~---~~~~~~~~~-----~~~ 187 (334)
T 3kb6_A 123 VKKLNFSQDSEILARELNR-LTLGVIGTGRIGSRVAMYGLAF------GMKVLCYDVVKR---EDLKEKGCV-----YTS 187 (334)
T ss_dssp HHTTCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCC---HHHHHTTCE-----ECC
T ss_pred ccccccccccccccceecC-cEEEEECcchHHHHHHHhhccc------CceeeecCCccc---hhhhhcCce-----ecC
Confidence 4455553322 2478899 9999999999999999999987 999876654422 233445665 468
Q ss_pred HhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 012479 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
.+|++++||+|++++|-... ..++. +.+..||+|++|+-++
T Consensus 188 l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~a 230 (334)
T 3kb6_A 188 LDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTA 230 (334)
T ss_dssp HHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECS
T ss_pred HHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecC
Confidence 99999999999999996544 44564 5778899999887554
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.56 E-value=8.7e-08 Score=85.64 Aligned_cols=112 Identities=10% Similarity=0.008 Sum_probs=78.6
Q ss_pred CEEEEEcc----cchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|+|||+ |+||..++++|++. |++|+..+.... +. -.|... ..++.|+.+..|++++++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~------G~~v~~vnp~~~g~~-----i~G~~~----~~sl~el~~~~Dlvii~v 78 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQ------GYHVIPVSPKVAGKT-----LLGQQG----YATLADVPEKVDMVDVFR 78 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHH------TCCEEEECSSSTTSE-----ETTEEC----CSSTTTCSSCCSEEECCS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHC------CCEEEEeCCcccccc-----cCCeec----cCCHHHcCCCCCEEEEEe
Confidence 88999999 89999999999999 888554443320 11 147764 567888888999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhh
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
|+....++++++.. ...+.++.+.+.+.-...+. .-..++.++ .||+++-..
T Consensus 79 p~~~v~~v~~~~~~-~g~~~i~i~~~~~~~~l~~~---a~~~Gi~~i--gpnc~g~~~ 130 (145)
T 2duw_A 79 NSEAAWGVAQEAIA-IGAKTLWLQLGVINEQAAVL---AREAGLSVV--MDRCPAIEL 130 (145)
T ss_dssp CSTHHHHHHHHHHH-HTCCEEECCTTCCCHHHHHH---HHTTTCEEE--CSCCHHHHS
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEcCChHHHHHHHH---HHHcCCEEE--cCCeeeEEc
Confidence 99999999998766 44556666665553211111 113456665 499988663
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.56 E-value=5.4e-07 Score=76.76 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=65.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-HcCceecCCCcCCHh----hhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIY----ETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~~----eav~~ADvViLav 186 (462)
++|.|||+|.+|..+++.|.+. |++|++.++...+ .+... ..|+....+...+.+ ..++++|+||+++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~------g~~v~~~d~~~~~-~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDIDKDI-CKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHH-HHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 7999999999999999999998 8888777665333 33333 346531111112222 2267899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
|+......+.++.+.++++.+|..+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 105 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGINKTIARISEI 105 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred CCchHHHHHHHHHHHcCCCEEEEEecCH
Confidence 9886665555666667777777655543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-07 Score=92.32 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=70.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..++| ++|+|||+|.||.++|+.|+.. |.+|++.++... ..+.+.+.|+... ...+.+++++++|+|+++
T Consensus 151 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~dr~~~-~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 220 (293)
T 3d4o_A 151 FTIHG-ANVAVLGLGRVGMSVARKFAAL------GAKVKVGARESD-LLARIAEMGMEPF--HISKAAQELRDVDVCINT 220 (293)
T ss_dssp SCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHH-HHHHHHHTTSEEE--EGGGHHHHTTTCSEEEEC
T ss_pred CCCCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCeec--ChhhHHHHhcCCCEEEEC
Confidence 46789 9999999999999999999988 888887776533 3344556676520 024677889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+|+..+.+ +....|++|.+|++++
T Consensus 221 ~p~~~i~~---~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 221 IPALVVTA---NVLAEMPSHTFVIDLA 244 (293)
T ss_dssp CSSCCBCH---HHHHHSCTTCEEEECS
T ss_pred CChHHhCH---HHHHhcCCCCEEEEec
Confidence 99854422 3455789999988776
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.2e-08 Score=103.92 Aligned_cols=101 Identities=17% Similarity=0.167 Sum_probs=76.8
Q ss_pred ccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc
Q 012479 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (462)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ 178 (462)
|..... ..+.| ++|+|||+|.||.++|+.|+.. |.+|++.++. ......+...|+. ..++++++++
T Consensus 247 w~r~~~-~~l~G-ktVgIIG~G~IG~~vA~~l~~~------G~~Viv~d~~-~~~~~~a~~~g~~-----~~~l~ell~~ 312 (479)
T 1v8b_A 247 LMRATD-FLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEID-PICAIQAVMEGFN-----VVTLDEIVDK 312 (479)
T ss_dssp HHHHHC-CCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSC-HHHHHHHHTTTCE-----ECCHHHHTTT
T ss_pred hhhccc-cccCC-CEEEEEeeCHHHHHHHHHHHhC------cCEEEEEeCC-hhhHHHHHHcCCE-----ecCHHHHHhc
Confidence 754332 47899 9999999999999999999988 9988776654 3333356667886 4689999999
Q ss_pred CCeEEEeecchhHHHHH-HHHHhcCCCCcEEEEeccchH
Q 012479 179 SDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 179 ADvViLavpd~a~~~vl-~eI~~~Lk~gaiL~~a~G~~i 216 (462)
||+|++++.. ..++ .+....||+|++|+.++-+.+
T Consensus 313 aDiVi~~~~t---~~lI~~~~l~~MK~gailiNvgrg~~ 348 (479)
T 1v8b_A 313 GDFFITCTGN---VDVIKLEHLLKMKNNAVVGNIGHFDD 348 (479)
T ss_dssp CSEEEECCSS---SSSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred CCEEEECCCh---hhhcCHHHHhhcCCCcEEEEeCCCCc
Confidence 9999999732 2334 367788999999987765433
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-07 Score=91.57 Aligned_cols=94 Identities=21% Similarity=0.344 Sum_probs=71.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..++| ++|+|||+|.||.++|+.|+.. |.+|++.++... ..+.+.+.|+... ...+.++++++||+|+++
T Consensus 153 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~d~~~~-~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 222 (300)
T 2rir_A 153 YTIHG-SQVAVLGLGRTGMTIARTFAAL------GANVKVGARSSA-HLARITEMGLVPF--HTDELKEHVKDIDICINT 222 (300)
T ss_dssp SCSTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSHH-HHHHHHHTTCEEE--EGGGHHHHSTTCSEEEEC
T ss_pred CCCCC-CEEEEEcccHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHCCCeEE--chhhHHHHhhCCCEEEEC
Confidence 57889 9999999999999999999988 888887776533 3344445676420 024678899999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+|+..+. ++....|++|.+|++++
T Consensus 223 ~p~~~i~---~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 223 IPSMILN---QTVLSSMTPKTLILDLA 246 (300)
T ss_dssp CSSCCBC---HHHHTTSCTTCEEEECS
T ss_pred CChhhhC---HHHHHhCCCCCEEEEEe
Confidence 9985432 24567899999888765
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.5e-07 Score=93.13 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=70.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--------EEEEEecCCc---hhHHHHH-Hc--------CceecC--CCc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--------VVKVGLRKGS---RSFAEAR-AA--------GFTEEN--GTL 169 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--------~Vivg~r~~~---~s~~~A~-~~--------G~~~~d--~~~ 169 (462)
.||+|||.|+.|.|+|.-|.++ |. +|.+|.|+.+ +...... .. |+...+ ..+
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n------g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t 108 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN------CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVAN 108 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHHc------CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEe
Confidence 4899999999999999999887 43 4777766533 1111111 11 121100 014
Q ss_pred CCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEE-EEeccc
Q 012479 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGF 214 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~ 214 (462)
.|+++++++||+||+++|.+...++++++.++++++..| +.+-|+
T Consensus 109 ~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 109 PDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp SCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred CCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEecccc
Confidence 678999999999999999999999999999999999864 455676
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.5e-06 Score=92.73 Aligned_cols=212 Identities=13% Similarity=0.123 Sum_probs=136.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCceec-C-----CCcCC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-N-----GTLGD 171 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-d-----~~~~~ 171 (462)
+.++||+|||.|.||..||..+..+ |++|++.+.. .+..+.+.+ .+.... + -...+
T Consensus 314 ~~i~~v~ViGaG~MG~gIA~~~a~a------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (742)
T 3zwc_A 314 QPVSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS 386 (742)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEES
T ss_pred ccccEEEEEcccHHHHHHHHHHHhC------CCchhcccch-HhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccC
Confidence 3468999999999999999999998 9998876654 322222221 110000 0 00123
Q ss_pred HhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
..+.+++||+||=+++-..- .+++.+|.++++++++|. -++++.+..+.. .....-+|+..|+--|.+..+
T Consensus 387 ~~~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~---~~~~p~r~ig~HFfnP~~~m~--- 460 (742)
T 3zwc_A 387 STKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHVMR--- 460 (742)
T ss_dssp CGGGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEECCSSTTTCC---
T ss_pred cHHHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHh---hcCCccccccccccCCCCCCc---
Confidence 34568899999999996555 369999999999999874 677888877654 222334799999988877621
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHh--HHHHHHHHHHHHHHH
Q 012479 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG--AVHGIVESLFRRFTE 326 (462)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G--~~paliea~~d~~v~ 326 (462)
.-= |.++...+++.++.+.++.+.+|.+.|+ . .+ +.-| +.+ ..|.+-|++ .+++
T Consensus 461 ----------LVE-vi~g~~Ts~e~~~~~~~~~~~lgK~pV~-v---kd--~pGF-----i~NRi~~~~~~ea~--~l~~ 516 (742)
T 3zwc_A 461 ----------LLE-VIPSRYSSPTTIATVMSLSKKIGKIGVV-V---GN--CYGF-----VGNRMLAPYYNQGF--FLLE 516 (742)
T ss_dssp ----------EEE-EEECSSCCHHHHHHHHHHHHHTTCEEEE-C---CC--STTT-----THHHHHHHHHHHHH--HHHH
T ss_pred ----------eEE-EecCCCCCHHHHHHHHHHHHHhCCCCcc-c---CC--CCCc-----cHHHHhhHHHHHHH--HHHH
Confidence 122 4568889999999999999999975322 1 11 1112 212 122344444 3677
Q ss_pred cCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHH
Q 012479 327 NGMNEDLAYKNTVECI---TGIISKIISTQGMLAVY 359 (462)
Q Consensus 327 ~G~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~ 359 (462)
.|.++++--... ..+ .| --.|+-.-|++.++
T Consensus 517 eG~~~~~id~a~-~~~G~pmG-Pf~l~D~vGlDv~~ 550 (742)
T 3zwc_A 517 EGSKPEDVDGVL-EEFGFKMG-PFRVSDLAGLDVGW 550 (742)
T ss_dssp TTCCHHHHHHHH-HHHTCSSC-HHHHHHHHCHHHHH
T ss_pred cCCCHHHHHHHH-HHcCCCCC-hHHHHHHhCHHHHH
Confidence 888887655422 221 14 34556666775443
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=4.8e-08 Score=103.85 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=75.9
Q ss_pred ccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc
Q 012479 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (462)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ 178 (462)
|..... ..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.++.. .....+...|+. ..++++++++
T Consensus 267 w~~~~g-~~L~G-ktVgIIG~G~IG~~vA~~l~~~------G~~V~v~d~~~-~~~~~a~~~G~~-----~~~l~ell~~ 332 (494)
T 3d64_A 267 IKRATD-VMIAG-KIAVVAGYGDVGKGCAQSLRGL------GATVWVTEIDP-ICALQAAMEGYR-----VVTMEYAADK 332 (494)
T ss_dssp HHHHHC-CCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSCH-HHHHHHHTTTCE-----ECCHHHHTTT
T ss_pred hhhccc-cccCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCh-HhHHHHHHcCCE-----eCCHHHHHhc
Confidence 654333 57899 9999999999999999999987 99987766543 323345566876 4689999999
Q ss_pred CCeEEEeecchhHHHHH-HHHHhcCCCCcEEEEeccch
Q 012479 179 SDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 179 ADvViLavpd~a~~~vl-~eI~~~Lk~gaiL~~a~G~~ 215 (462)
||+|++++.. ..++ ++....||+|++|+.++-+.
T Consensus 333 aDiVi~~~~t---~~lI~~~~l~~MK~gAilINvgrg~ 367 (494)
T 3d64_A 333 ADIFVTATGN---YHVINHDHMKAMRHNAIVCNIGHFD 367 (494)
T ss_dssp CSEEEECSSS---SCSBCHHHHHHCCTTEEEEECSSSS
T ss_pred CCEEEECCCc---ccccCHHHHhhCCCCcEEEEcCCCc
Confidence 9999999832 2334 36778899999998776443
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.2e-08 Score=85.48 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=67.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
| ++|+|||+|.||.++++.|+.. |++|+++.|..++..+.+++.|.... ...+..++++++|+||.++|..
T Consensus 21 ~-~~v~iiG~G~iG~~~a~~l~~~------g~~v~v~~r~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 21 G-NKILLVGNGMLASEIAPYFSYP------QYKVTVAGRNIDHVRAFAEKYEYEYV--LINDIDSLIKNNDVIITATSSK 91 (144)
T ss_dssp C-CEEEEECCSHHHHHHGGGCCTT------TCEEEEEESCHHHHHHHHHHHTCEEE--ECSCHHHHHHTCSEEEECSCCS
T ss_pred C-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHHhCCceE--eecCHHHHhcCCCEEEEeCCCC
Confidence 6 9999999999999999999987 88877777765555566777775421 1467888999999999999976
Q ss_pred hHHHHHHHHHhcCCCCcEEEEe
Q 012479 190 AQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
.. ++. ...+++|.++++.
T Consensus 92 ~~--~~~--~~~l~~g~~vid~ 109 (144)
T 3oj0_A 92 TP--IVE--ERSLMPGKLFIDL 109 (144)
T ss_dssp SC--SBC--GGGCCTTCEEEEC
T ss_pred Cc--Eee--HHHcCCCCEEEEc
Confidence 21 111 2457788877765
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-07 Score=94.26 Aligned_cols=91 Identities=12% Similarity=0.146 Sum_probs=68.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcC--ceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G--~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
++|+|||+|.||.+++.+|.+. .|+ +|.+++|..++..+.+++.+ +.. +.+.+++++++|+|+++||.
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~-----~g~~~V~v~dr~~~~~~~l~~~~~~~~~~----~~~~~e~v~~aDiVi~atp~ 206 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQ-----FSFKEVRIWNRTKENAEKFADTVQGEVRV----CSSVQEAVAGADVIITVTLA 206 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CCCSEEEEECSSHHHHHHHHHHSSSCCEE----CSSHHHHHTTCSEEEECCCC
T ss_pred cEEEEECCcHHHHHHHHHHHHh-----CCCcEEEEEcCCHHHHHHHHHHhhCCeEE----eCCHHHHHhcCCEEEEEeCC
Confidence 8999999999999999999864 155 77777776555555666656 553 56889999999999999995
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
. ..++.. +.+++|++|.+++++.
T Consensus 207 ~--~~v~~~--~~l~~g~~vi~~g~~~ 229 (312)
T 2i99_A 207 T--EPILFG--EWVKPGAHINAVGASR 229 (312)
T ss_dssp S--SCCBCG--GGSCTTCEEEECCCCS
T ss_pred C--CcccCH--HHcCCCcEEEeCCCCC
Confidence 2 233322 5789999888776553
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-08 Score=100.76 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=71.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav-~~ADvViLavpd~a 190 (462)
+||+|||.|+||.++|..|.++ |.+|.+..|.... .+.....|... .....+..+++ +.+|+||++||+.+
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~g~~~-~~~~~~~~~~~~~~~D~vilavk~~~ 74 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS------LPHTTLIGRHAKT-ITYYTVPHAPA-QDIVVKGYEDVTNTFDVIIIAVKTHQ 74 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH------CTTCEEEESSCEE-EEEESSTTSCC-EEEEEEEGGGCCSCEEEEEECSCGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeccCc-EEEEecCCeec-cceecCchHhcCCCCCEEEEeCCccC
Confidence 7999999999999999999998 8888877776332 11112234210 00012344554 88999999999999
Q ss_pred HHHHHHHHHhcCCCCcE-EEEeccchH
Q 012479 191 QADNYEKIFSCMKPNSI-LGLSHGFLL 216 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gai-L~~a~G~~i 216 (462)
..++++++.|+++++++ |++..|+..
T Consensus 75 ~~~~l~~l~~~l~~~~~iv~~~nGi~~ 101 (294)
T 3g17_A 75 LDAVIPHLTYLAHEDTLIILAQNGYGQ 101 (294)
T ss_dssp HHHHGGGHHHHEEEEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEeccCccc
Confidence 99999999999988875 567788864
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-07 Score=96.83 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=72.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.++. +.....|...|+. ..+++|++++||+|+++
T Consensus 207 ~~L~G-ktVgIiG~G~IG~~vA~~Lka~------Ga~Viv~D~~-p~~a~~A~~~G~~-----~~sL~eal~~ADVVilt 273 (436)
T 3h9u_A 207 VMIAG-KTACVCGYGDVGKGCAAALRGF------GARVVVTEVD-PINALQAAMEGYQ-----VLLVEDVVEEAHIFVTT 273 (436)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred CcccC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCC-hhhhHHHHHhCCe-----ecCHHHHHhhCCEEEEC
Confidence 56789 9999999999999999999998 9988765543 4445566778887 46899999999999986
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEecc
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHG 213 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G 213 (462)
..... ++. +....||+|++|+.++-
T Consensus 274 ~gt~~---iI~~e~l~~MK~gAIVINvgR 299 (436)
T 3h9u_A 274 TGNDD---IITSEHFPRMRDDAIVCNIGH 299 (436)
T ss_dssp SSCSC---SBCTTTGGGCCTTEEEEECSS
T ss_pred CCCcC---ccCHHHHhhcCCCcEEEEeCC
Confidence 65432 233 56788999999886653
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-07 Score=90.86 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=68.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.++| +|+|||+|.||.+++.+|.+. |.+|.+.+|+.++..+.+.+.|.. ..+.+++ +++|+||+++
T Consensus 114 ~l~~--~v~iiG~G~~g~~~a~~l~~~------g~~v~v~~r~~~~~~~l~~~~~~~-----~~~~~~~-~~~Divi~~t 179 (263)
T 2d5c_A 114 PLKG--PALVLGAGGAGRAVAFALREA------GLEVWVWNRTPQRALALAEEFGLR-----AVPLEKA-REARLLVNAT 179 (263)
T ss_dssp CCCS--CEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHHTCE-----ECCGGGG-GGCSEEEECS
T ss_pred CCCC--eEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhccc-----hhhHhhc-cCCCEEEEcc
Confidence 3566 899999999999999999988 888888777655545566666654 3467788 9999999999
Q ss_pred cchhHHH---HHHHHHhcCCCCcEEEEec
Q 012479 187 SDAAQAD---NYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 187 pd~a~~~---vl~eI~~~Lk~gaiL~~a~ 212 (462)
|+..+.. ++. .+.+++|++|+++.
T Consensus 180 p~~~~~~~~~~l~--~~~l~~g~~viD~~ 206 (263)
T 2d5c_A 180 RVGLEDPSASPLP--AELFPEEGAAVDLV 206 (263)
T ss_dssp STTTTCTTCCSSC--GGGSCSSSEEEESC
T ss_pred CCCCCCCCCCCCC--HHHcCCCCEEEEee
Confidence 9886532 222 45688888877654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-06 Score=91.97 Aligned_cols=94 Identities=24% Similarity=0.255 Sum_probs=74.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|+|||+|.+|..+|+.++.. |.+|++..+. +.....+...|+. +.+.+|++++||+|+++
T Consensus 243 ~~L~G-KTVgVIG~G~IGr~vA~~lraf------Ga~Viv~d~d-p~~a~~A~~~G~~-----vv~LeElL~~ADIVv~a 309 (464)
T 3n58_A 243 VMMAG-KVAVVCGYGDVGKGSAQSLAGA------GARVKVTEVD-PICALQAAMDGFE-----VVTLDDAASTADIVVTT 309 (464)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCE-----ECCHHHHGGGCSEEEEC
T ss_pred CcccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCC-cchhhHHHhcCce-----eccHHHHHhhCCEEEEC
Confidence 46889 9999999999999999999988 9998776554 3334556678887 46899999999999998
Q ss_pred ecchhHHHHH-HHHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl-~eI~~~Lk~gaiL~~a~G~~ 215 (462)
+... .++ .+.+..||+|++|+.++-+.
T Consensus 310 tgt~---~lI~~e~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 310 TGNK---DVITIDHMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp CSSS---SSBCHHHHHHSCTTEEEEECSSST
T ss_pred CCCc---cccCHHHHhcCCCCeEEEEcCCCC
Confidence 7532 344 36777899999988766554
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-06 Score=85.27 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=63.9
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCC--cEEEEEecCCchhHHHHHHcC---------ceecCCCcCCHhhhhccC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAG---------FTEENGTLGDIYETISGS 179 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G--~~Vivg~r~~~~s~~~A~~~G---------~~~~d~~~~~~~eav~~A 179 (462)
|+||+|||.|+||.++|..|..+ | .+|++.++..++....+.+.+ +.. ...+. +++++|
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~------g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~d~-~~~~~a 70 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNI---VINDW-AALADA 70 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEE---EESCG-GGGTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEE---EeCCH-HHhCCC
Confidence 47999999999999999999988 7 577776665433333333221 111 02455 788999
Q ss_pred CeEEEeecchhH--------------------HHHHHHHHhcCCCCcE-EEEeccchH
Q 012479 180 DLVLLLISDAAQ--------------------ADNYEKIFSCMKPNSI-LGLSHGFLL 216 (462)
Q Consensus 180 DvViLavpd~a~--------------------~~vl~eI~~~Lk~gai-L~~a~G~~i 216 (462)
|+||+++|+... .++++++.++. ++.+ |..+-+..+
T Consensus 71 DvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~~ 127 (309)
T 1hyh_A 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDV 127 (309)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred CEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCcHHH
Confidence 999999997653 46666777765 4554 445545543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=8.5e-07 Score=92.77 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=72.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|+|||+|.+|.++|+.|+.. |.+|++.++. +.....|...|+. +.+.++++++||+|+++
T Consensus 216 ~~L~G-ktV~ViG~G~IGk~vA~~Lra~------Ga~Viv~D~d-p~ra~~A~~~G~~-----v~~Leeal~~ADIVi~a 282 (435)
T 3gvp_A 216 MMFGG-KQVVVCGYGEVGKGCCAALKAM------GSIVYVTEID-PICALQACMDGFR-----LVKLNEVIRQVDIVITC 282 (435)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEeCC-hhhhHHHHHcCCE-----eccHHHHHhcCCEEEEC
Confidence 46789 9999999999999999999988 9988776554 3334567778886 46899999999999997
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~ 214 (462)
+- ...++. +....||+|.+|+.++-+
T Consensus 283 tg---t~~lI~~e~l~~MK~gailINvgrg 309 (435)
T 3gvp_A 283 TG---NKNVVTREHLDRMKNSCIVCNMGHS 309 (435)
T ss_dssp SS---CSCSBCHHHHHHSCTTEEEEECSST
T ss_pred CC---CcccCCHHHHHhcCCCcEEEEecCC
Confidence 32 223454 667789999988866533
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-06 Score=86.98 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=84.7
Q ss_pred CEEEEE-cc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeec
Q 012479 112 NQIGVI-GW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (462)
Q Consensus 112 kkIgII-G~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavp 187 (462)
++|+|| |+ |++|..++++|++. |+++++..++.... .+-.|+.. ..+++|+.+ ..|++++++|
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~~------G~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~vD~avI~vP 80 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGG---KTHLGLPV----FNTVKEAKEQTGATASVIYVP 80 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEEECCC
T ss_pred CcEEEEECCCCCHHHHHHHHHHHC------CCcEEEEeCCCcCc---ceECCeee----echHHHhhhcCCCCEEEEecC
Confidence 889999 98 99999999999999 99865555543211 01257765 568999888 8999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCc-cEEecccCCCchhhH
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNI-GVIAVCPKGMGPSVR 245 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v-~VV~v~Pngpg~~vr 245 (462)
++.+.++++++... .-+.+|.+++|+..+...+ .....+.. .+..+.||+||....
T Consensus 81 ~~~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~-l~~~a~~~~gi~liGPnc~Gii~p 137 (305)
T 2fp4_A 81 PPFAAAAINEAIDA-EVPLVVCITEGIPQQDMVR-VKHRLLRQGKTRLIGPNCPGVINP 137 (305)
T ss_dssp HHHHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHTTCSSCEEECSSSCEEEET
T ss_pred HHHHHHHHHHHHHC-CCCEEEEECCCCChHHHHH-HHHHHHhcCCcEEEeCCCCeEecc
Confidence 99999999985542 2245688999997543111 11222333 455577999988754
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-06 Score=91.59 Aligned_cols=92 Identities=22% Similarity=0.316 Sum_probs=73.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++.++ +....+.|.+.|+. +.+.+++++++|+|++++
T Consensus 271 ~l~G-ktV~IiG~G~IG~~~A~~lka~------Ga~Viv~d~-~~~~~~~A~~~Ga~-----~~~l~e~l~~aDvVi~at 337 (494)
T 3ce6_A 271 LIGG-KKVLICGYGDVGKGCAEAMKGQ------GARVSVTEI-DPINALQAMMEGFD-----VVTVEEAIGDADIVVTAT 337 (494)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCE-----ECCHHHHGGGCSEEEECS
T ss_pred CCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCE-----EecHHHHHhCCCEEEECC
Confidence 5788 9999999999999999999988 888766554 44556678888986 357888999999999999
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~gaiL~~a~G~ 214 (462)
+... ++. +....|++|.+|+.++-+
T Consensus 338 gt~~---~i~~~~l~~mk~ggilvnvG~~ 363 (494)
T 3ce6_A 338 GNKD---IIMLEHIKAMKDHAILGNIGHF 363 (494)
T ss_dssp SSSC---SBCHHHHHHSCTTCEEEECSSS
T ss_pred CCHH---HHHHHHHHhcCCCcEEEEeCCC
Confidence 8654 233 566779999998877654
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-06 Score=82.27 Aligned_cols=79 Identities=24% Similarity=0.244 Sum_probs=58.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav-~~ADvViLavpd~a 190 (462)
+||||||+|.||..++++|.+. |++++...+.+.+. ++ . ..+.++++ .++|+|++++|+..
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~------g~~lv~v~d~~~~~----~~---~-----~~~~~~l~~~~~DvVv~~~~~~~ 62 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN------GFEIAAILDVRGEH----EK---M-----VRGIDEFLQREMDVAVEAASQQA 62 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCCC----TT---E-----ESSHHHHTTSCCSEEEECSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcC------CCEEEEEEecCcch----hh---h-----cCCHHHHhcCCCCEEEECCCHHH
Confidence 5899999999999999999977 88874333333321 11 2 46888888 69999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEe
Q 012479 191 QADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+.+++... ++.|+.|.+.
T Consensus 63 ~~~~~~~~---l~~G~~vv~~ 80 (236)
T 2dc1_A 63 VKDYAEKI---LKAGIDLIVL 80 (236)
T ss_dssp HHHHHHHH---HHTTCEEEES
T ss_pred HHHHHHHH---HHCCCcEEEE
Confidence 88877543 4567765544
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=9.9e-07 Score=89.72 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=68.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHc----CceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|+|||+|.||.+++++|.... + .+|.+++|..++..+.+++. |+.. ..+.+.+++++++|+|+++|
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~-----~~~~V~V~~r~~~~a~~la~~~~~~~g~~~--~~~~~~~eav~~aDiVi~aT 202 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHL-----GIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITTVT 202 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEECC
T ss_pred CeEEEECCcHHHHHHHHHHHHhC-----CCcEEEEEcCCHHHHHHHHHHHHhccCceE--EEeCCHHHHHhcCCEEEEec
Confidence 89999999999999999986530 3 36778877756555555553 5321 01568899999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|......++. ...+++|++|...+.+.
T Consensus 203 ps~~~~pvl~--~~~l~~G~~V~~vgs~~ 229 (350)
T 1x7d_A 203 ADKAYATIIT--PDMLEPGMHLNAVGGDC 229 (350)
T ss_dssp CCSSEEEEEC--GGGCCTTCEEEECSCCB
T ss_pred cCCCCCceec--HHHcCCCCEEEECCCCC
Confidence 9864222332 25688999888777653
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.3e-06 Score=84.67 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=80.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||+|||+ |.||..++++|++. |++++...++..... +..|+.. ..+++|+.+ +.|++++++|+
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~------g~~~V~~V~p~~~g~---~~~G~~v----y~sl~el~~~~~~D~viI~tP~ 74 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGGT---THLGLPV----FNTVREAVAATGATASVIYVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCCcccc---eeCCeec----cCCHHHHhhcCCCCEEEEecCH
Confidence 78999999 99999999999998 888655554421100 1357664 568899887 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchh
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
..+.+++.+.... ....+|.++.|+......+ .....+...+..+.||++|..
T Consensus 75 ~~~~~~~~ea~~~-Gi~~iVi~t~G~~~~~~~~-l~~~A~~~gv~liGPNc~Gi~ 127 (288)
T 2nu8_A 75 PFCKDSILEAIDA-GIKLIITITEGIPTLDMLT-VKVKLDEAGVRMIGPNTPGVI 127 (288)
T ss_dssp GGHHHHHHHHHHT-TCSEEEECCCCCCHHHHHH-HHHHHHHHTCEEECSSCCEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEecCCccee
Confidence 9999999886543 2233567888996543211 011112233444679987765
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-06 Score=83.97 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=61.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||||||+|+||..++.+|++. .+++++...+.+ ++..+.+.+.|... ..+.+++++ +.|+|++++|+
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAAN-----PDLELVVIADPFIEGAQRLAEANGAEA----VASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHTTTCEE----ESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999875 156665334443 34445566678654 678999998 89999999999
Q ss_pred hhHHHHHHHHHh
Q 012479 189 AAQADNYEKIFS 200 (462)
Q Consensus 189 ~a~~~vl~eI~~ 200 (462)
..+.++......
T Consensus 76 ~~h~~~~~~al~ 87 (344)
T 3euw_A 76 STHVDLITRAVE 87 (344)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 999988776543
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.2e-06 Score=84.92 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=81.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
+||+|+|+ |.||..+++++++. |++++....+..... +..|+.. ..+++|+.+ .+|++++++|+
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~------g~~~v~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~Dv~Ii~vp~ 74 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGGM---EVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHHc------CCeEEEEECCCCCCc---eECCEEe----eCCHHHHhhcCCCCEEEEecCH
Confidence 78999998 99999999999998 888655555432100 1357765 568899888 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhh
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
..+.+++++.... .-..+|.++.||......+ .....++..+..+.||++|-..
T Consensus 75 ~~~~~~~~ea~~~-Gi~~vVi~t~G~~~~~~~~-l~~~a~~~gi~vigPNc~Gii~ 128 (288)
T 1oi7_A 75 PAAADAALEAAHA-GIPLIVLITEGIPTLDMVR-AVEEIKALGSRLIGGNCPGIIS 128 (288)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCHHHHHH-HHHHHHHHTCEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHH-HHHHHHHcCCEEEeCCCCeEEc
Confidence 9999999986543 2234677899996532111 1111122334455688776553
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.19 E-value=2.6e-06 Score=83.59 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=61.1
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
.||||||+|.||.. ++.+|++. .+++++ +.++..++..+.+++.|+.. ..+.++++++.|+|++++|+.
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKS-----ERFEFVGAFTPNKVKREKICSDYRIMP----FDSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSC-----SSSEEEEEECSCHHHHHHHHHHHTCCB----CSCHHHHHTTCSEEEECCCGG
T ss_pred CcEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHHhcCCEEEEeCCcH
Confidence 68999999999996 88888764 156666 44444444455666778763 678999999999999999999
Q ss_pred hHHHHHHHHH
Q 012479 190 AQADNYEKIF 199 (462)
Q Consensus 190 a~~~vl~eI~ 199 (462)
.+.++.....
T Consensus 78 ~h~~~~~~al 87 (308)
T 3uuw_A 78 THYEIIKILL 87 (308)
T ss_dssp GHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9998877654
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6.7e-06 Score=73.15 Aligned_cols=121 Identities=10% Similarity=0.061 Sum_probs=80.7
Q ss_pred cccCCCCEEEEEcc----cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCe
Q 012479 106 DAFNGINQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 106 ~~l~gikkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADv 181 (462)
..|+..++|+|||. |.+|..++++|++. |++| +......+ .-.|... ..++.|+....|+
T Consensus 17 ~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~------G~~v-~~Vnp~~~-----~i~G~~~----y~sl~~l~~~vDl 80 (144)
T 2d59_A 17 EILTRYKKIALVGASPKPERDANIVMKYLLEH------GYDV-YPVNPKYE-----EVLGRKC----YPSVLDIPDKIEV 80 (144)
T ss_dssp HHHHHCCEEEEETCCSCTTSHHHHHHHHHHHT------TCEE-EEECTTCS-----EETTEEC----BSSGGGCSSCCSE
T ss_pred HHHcCCCEEEEEccCCCCCchHHHHHHHHHHC------CCEE-EEECCCCC-----eECCeec----cCCHHHcCCCCCE
Confidence 34531289999999 79999999999998 8874 33332211 1246664 5678888888999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
+++++|+..+.++++++...-. +.+ .+..|+.-..+.+ ..-..++++++ ||+++-...+++
T Consensus 81 vvi~vp~~~~~~vv~~~~~~gi-~~i-~~~~g~~~~~l~~--~a~~~Gi~vvG--pnc~gv~~~~~~ 141 (144)
T 2d59_A 81 VDLFVKPKLTMEYVEQAIKKGA-KVV-WFQYNTYNREASK--KADEAGLIIVA--NRCMMREHERLL 141 (144)
T ss_dssp EEECSCHHHHHHHHHHHHHHTC-SEE-EECTTCCCHHHHH--HHHHTTCEEEE--SCCHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHcCC-CEE-EECCCchHHHHHH--HHHHcCCEEEc--CCchhhcchhhc
Confidence 9999999999999988665432 234 4556653111111 01124566654 999988876665
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.4e-06 Score=82.78 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=60.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEE-EecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||||||+|.||..++.+|++. .+++++. .++..++..+.+.+.|+. ..+.+++++ +.|+|++++|+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGN-----ADARLVAVADAFPAAAEAIAGAYGCE-----VRTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCE-----ECCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHHHHHHHhCCC-----cCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999875 1566653 344434444556667765 478999987 89999999999
Q ss_pred hhHHHHHHHHH
Q 012479 189 AAQADNYEKIF 199 (462)
Q Consensus 189 ~a~~~vl~eI~ 199 (462)
..+.++.....
T Consensus 74 ~~h~~~~~~al 84 (331)
T 4hkt_A 74 DTHADLIERFA 84 (331)
T ss_dssp GGHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 99998877654
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.16 E-value=5.1e-06 Score=82.64 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=61.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEE-EecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||||||+|.||..++.+|++. .+++++. .++..++..+.+.+.|+.. ...+.+++++ +.|+|++++|+
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRES-----AQAEVRGIASRRLENAQKMAKELAIPV---AYGSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHS-----SSEEEEEEBCSSSHHHHHHHHHTTCCC---CBSSHHHHHHCTTCSEEEECCCG
T ss_pred EEEEEECchHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHcCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999999999999999885 1566653 3444445556667777731 1578999987 79999999999
Q ss_pred hhHHHHHHHHH
Q 012479 189 AAQADNYEKIF 199 (462)
Q Consensus 189 ~a~~~vl~eI~ 199 (462)
..+.++.....
T Consensus 78 ~~h~~~~~~al 88 (330)
T 3e9m_A 78 QGHYSAAKLAL 88 (330)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877543
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.5e-06 Score=83.55 Aligned_cols=80 Identities=10% Similarity=0.098 Sum_probs=61.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec-CCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r-~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||||||+|.||..++.+|++.. .+++++...+ ..++..+.+++.|+.. ..+.+|+++ +.|+|++++|+
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~~----~~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKHA----DRAELIDVCDIDPAALKAAVERTGARG----HASLTDMLAQTDADIVILTTPS 85 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTT----TTEEEEEEECSSHHHHHHHHHHHCCEE----ESCHHHHHHHCCCSEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhCC----CCeEEEEEEcCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEECCCc
Confidence 68999999999999999998751 1566654444 4344445566778764 678999987 79999999999
Q ss_pred hhHHHHHHHHH
Q 012479 189 AAQADNYEKIF 199 (462)
Q Consensus 189 ~a~~~vl~eI~ 199 (462)
..+.++..+..
T Consensus 86 ~~h~~~~~~al 96 (354)
T 3q2i_A 86 GLHPTQSIECS 96 (354)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988876543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.7e-06 Score=87.77 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=71.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC---------CC---------
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GT--------- 168 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d---------~~--------- 168 (462)
-+++ .||+|||+|.+|...++.++.. |.+|++.+++ ....+.+.+.|....+ +.
T Consensus 181 ~v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~-~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~ 252 (381)
T 3p2y_A 181 TVKP-ASALVLGVGVAGLQALATAKRL------GAKTTGYDVR-PEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAER 252 (381)
T ss_dssp EECC-CEEEEESCSHHHHHHHHHHHHH------TCEEEEECSS-GGGHHHHHHTTCEECCCC-------------CHHHH
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccchhhhhHHHH
Confidence 3467 8999999999999999999988 9888776665 4446677777764210 00
Q ss_pred ---cCCHhhhhccCCeEEEee--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 012479 169 ---LGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (462)
Q Consensus 169 ---~~~~~eav~~ADvViLav--pd~a~~~vl-~eI~~~Lk~gaiL~~a~ 212 (462)
..+++++++++|+||.++ |......++ ++....||+|.+|++++
T Consensus 253 ~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 253 AQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred hhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 114568899999999886 433333333 57888899999999886
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.1e-06 Score=84.80 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=67.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH----cCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|+|||+|.||.+++++|+... ++ +|.+++|. +..+.+++ .|+... .+ +.++++++||+|++||
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~-----~~~~V~v~~r~--~a~~la~~l~~~~g~~~~--~~-~~~eav~~aDIVi~aT 191 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARF-----ALEAILVHDPY--ASPEILERIGRRCGVPAR--MA-APADIAAQADIVVTAT 191 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECTT--CCHHHHHHHHHHHTSCEE--EC-CHHHHHHHCSEEEECC
T ss_pred cEEEEECccHHHHHHHHHHHHhC-----CCcEEEEECCc--HHHHHHHHHHHhcCCeEE--Ee-CHHHHHhhCCEEEEcc
Confidence 89999999999999999998740 33 67777777 44555443 465321 14 8999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
|... .++. .+.++||++|++++.+..
T Consensus 192 ~s~~--pvl~--~~~l~~G~~V~~vGs~~p 217 (313)
T 3hdj_A 192 RSTT--PLFA--GQALRAGAFVGAIGSSLP 217 (313)
T ss_dssp CCSS--CSSC--GGGCCTTCEEEECCCSST
T ss_pred CCCC--cccC--HHHcCCCcEEEECCCCCC
Confidence 9752 2332 356899999998887643
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=71.13 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=64.1
Q ss_pred cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-HcCceecCCCcCC---Hhhh-hcc
Q 012479 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYET-ISG 178 (462)
Q Consensus 104 ~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~---~~ea-v~~ 178 (462)
.++...+ ++|.|||+|.+|..+++.|+.. |.+|++..+...+ .+.+. ..|.....+...+ ..++ +++
T Consensus 13 ~~~~~~~-~~v~IiG~G~iG~~la~~L~~~------g~~V~vid~~~~~-~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ 84 (155)
T 2g1u_A 13 MSKKQKS-KYIVIFGCGRLGSLIANLASSS------GHSVVVVDKNEYA-FHRLNSEFSGFTVVGDAAEFETLKECGMEK 84 (155)
T ss_dssp ----CCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCGGG-GGGSCTTCCSEEEESCTTSHHHHHTTTGGG
T ss_pred hhcccCC-CcEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHH-HHHHHhcCCCcEEEecCCCHHHHHHcCccc
Confidence 3577788 9999999999999999999998 9888777665433 34444 4564321111122 2233 678
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCc-EEEEecc
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHG 213 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~ga-iL~~a~G 213 (462)
+|+||+++++......+..+...+.+.. ++..+.+
T Consensus 85 ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~ 120 (155)
T 2g1u_A 85 ADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYD 120 (155)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 9999999998776665555555443333 3444433
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.3e-06 Score=83.41 Aligned_cols=80 Identities=25% Similarity=0.265 Sum_probs=60.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEE-EecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||||||+|+||..++.+|++. .+++++. .++..++..+.+++.|+.. ...+.+++++ +.|+|++++|+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 74 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMI-----DDAILYAISDVREDRLREMKEKLGVEK---AYKDPHELIEDPNVDAVLVCSST 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGS-----TTEEEEEEECSCHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHhCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999999999999999874 1566653 3444344445566677631 1578999988 89999999999
Q ss_pred hhHHHHHHHHH
Q 012479 189 AAQADNYEKIF 199 (462)
Q Consensus 189 ~a~~~vl~eI~ 199 (462)
..+.++..+..
T Consensus 75 ~~h~~~~~~al 85 (344)
T 3ezy_A 75 NTHSELVIACA 85 (344)
T ss_dssp GGHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 99988777543
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=6.4e-06 Score=82.12 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=62.5
Q ss_pred CEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEE-ecCCchhHHHHHHcCc--eecCCCcCCHhhhhcc--CCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVG-LRKGSRSFAEARAAGF--TEENGTLGDIYETISG--SDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg-~r~~~~s~~~A~~~G~--~~~d~~~~~~~eav~~--ADvViLa 185 (462)
.||||||+|.||..++.+|+ .. . +++++.. ++..++..+.+++.|+ .. ..+.++++++ .|+|+++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~-~----~~~l~av~d~~~~~~~~~~~~~g~~~~~----~~~~~~ll~~~~~D~V~i~ 73 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKL-S----GAEIVAVTDVNQEAAQKVVEQYQLNATV----YPNDDSLLADENVDAVLVT 73 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-S----SEEEEEEECSSHHHHHHHHHHTTCCCEE----ESSHHHHHHCTTCCEEEEC
T ss_pred EEEEEECccHHHHHHHHHHHhhC-C----CcEEEEEEcCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEC
Confidence 58999999999999999998 42 1 5666533 4443444556677783 33 6789999876 8999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEE
Q 012479 186 ISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
+|+..+.++..... +.|+.|
T Consensus 74 tp~~~h~~~~~~al---~~Gk~v 93 (344)
T 3mz0_A 74 SWGPAHESSVLKAI---KAQKYV 93 (344)
T ss_dssp SCGGGHHHHHHHHH---HTTCEE
T ss_pred CCchhHHHHHHHHH---HCCCcE
Confidence 99999988877543 345543
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.07 E-value=8.9e-06 Score=72.18 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=77.8
Q ss_pred CEEEEEcc----cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
++|+|||. |++|..++++|++. |++|+ .... .+..+ +-.|... ..++.|+.+..|++++++|
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~------G~~v~-~vnp-~~~~~--~i~G~~~----~~sl~el~~~vDlavi~vp 79 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVL-PVNP-RFQGE--ELFGEEA----VASLLDLKEPVDILDVFRP 79 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEE-EECG-GGTTS--EETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHC------CCEEE-EeCC-CcccC--cCCCEEe----cCCHHHCCCCCCEEEEEeC
Confidence 89999999 89999999999999 98733 2222 11000 1146664 5678888888999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
++...++++++...-- +.++...+.+.-...+. .-..++++|+ ||+++-...++.
T Consensus 80 ~~~~~~v~~~~~~~gi-~~i~~~~g~~~~~~~~~---a~~~Gir~vg--pnc~g~~~~~~~ 134 (140)
T 1iuk_A 80 PSALMDHLPEVLALRP-GLVWLQSGIRHPEFEKA---LKEAGIPVVA--DRCLMVEHKRLF 134 (140)
T ss_dssp HHHHTTTHHHHHHHCC-SCEEECTTCCCHHHHHH---HHHTTCCEEE--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CEEEEcCCcCHHHHHHH---HHHcCCEEEc--CCccceEChhhc
Confidence 9999999988665432 34554444443211111 1124567664 999988765554
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00017 Score=75.73 Aligned_cols=195 Identities=13% Similarity=0.150 Sum_probs=113.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-------------------HHHcC-ceecCCCcC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-------------------ARAAG-FTEENGTLG 170 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-------------------A~~~G-~~~~d~~~~ 170 (462)
|.+|+|||+|-+|..+|..|.+. |++|+ |.+.+++..+. +.+.| +.. +.
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~------G~~V~-g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~----tt 89 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALL------GHRVV-GYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSF----AE 89 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----CS
T ss_pred CCEEEEEccCHHHHHHHHHHHhC------CCcEE-EEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE----Ec
Confidence 37999999999999999999999 99875 66655433222 22233 221 45
Q ss_pred CHhhhhccCCeEEEeecc----------hhHHHHHHHHHhcCC---CCcEEEEec----cch--H-H-HhhhccccCCCC
Q 012479 171 DIYETISGSDLVLLLISD----------AAQADNYEKIFSCMK---PNSILGLSH----GFL--L-G-HLQSMGLDFPKN 229 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd----------~a~~~vl~eI~~~Lk---~gaiL~~a~----G~~--i-~-~~~~~~i~~p~~ 229 (462)
+.++++++||++|+|||. .....+.+.|.++|+ +|++|++-+ |.. + . .+++ . ..+
T Consensus 90 ~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~---~-~~~ 165 (444)
T 3vtf_A 90 SAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAE---E-AGG 165 (444)
T ss_dssp SHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHT---T-TTT
T ss_pred CHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHH---h-CCC
Confidence 788999999999999872 123456677888886 467776543 542 1 1 1221 1 123
Q ss_pred ccE-EecccC--CCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhh
Q 012479 230 IGV-IAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGER 306 (462)
Q Consensus 230 v~V-V~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeq 306 (462)
.+| |...|- -||..++++...- -++ +. ..++++.+.+..+.+.+.... +.|+.. +-+.-.+-+-
T Consensus 166 ~~f~v~~~PErl~eG~a~~d~~~~~---------riV-iG-~~~~~a~~~~~~ly~~~~~~~-~~~~~~-~AE~~Kl~eN 232 (444)
T 3vtf_A 166 VKFSVASNPEFLREGSALEDFFKPD---------RIV-IG-AGDERAASFLLDVYKAVDAPK-LVMKPR-EAELVKYASN 232 (444)
T ss_dssp CCCEEEECCCCCCTTSHHHHHHSCS---------CEE-EE-ESSHHHHHHHHHHTTTSCSCE-EEECHH-HHHHHHHHHH
T ss_pred CCceeecCcccccCCccccccccCC---------cEE-Ec-CCCHHHHHHHHHHHhccCCCE-EEechh-HHHHHHHHHH
Confidence 333 455564 5677777666532 212 12 124678888888888876543 233322 2222222222
Q ss_pred HhHHhHHHHHHHHHHHHHHHcCCCHHHH
Q 012479 307 GILLGAVHGIVESLFRRFTENGMNEDLA 334 (462)
Q Consensus 307 tvL~G~~paliea~~d~~v~~G~~~e~A 334 (462)
+-+ ..=-+|+..+....-+.|++..+.
T Consensus 233 ~~r-avnIa~~NEla~ice~~GiDv~eV 259 (444)
T 3vtf_A 233 VFL-ALKISFANEVGLLAKRLGVDTYRV 259 (444)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 211 111146677777777777775443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.7e-05 Score=67.27 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=61.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhh---h-hccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---T-ISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~e---a-v~~ADvViLavp 187 (462)
++|.|+|+|.+|.++++.|.+. |++|++.++. ++..+.+.+.|+....+...+.+. + ++++|+||+++|
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~------g~~V~~id~~-~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA------GKKVLAVDKS-KEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 7899999999999999999998 9988776654 445666666776421111223221 1 468999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEec
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+.......-..+..+....++..+.
T Consensus 80 ~~~~n~~~~~~a~~~~~~~iia~~~ 104 (141)
T 3llv_A 80 DDEFNLKILKALRSVSDVYAIVRVS 104 (141)
T ss_dssp CHHHHHHHHHHHHHHCCCCEEEEES
T ss_pred CHHHHHHHHHHHHHhCCceEEEEEc
Confidence 7655444434333333444555444
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.05 E-value=1e-05 Score=79.82 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=61.7
Q ss_pred CEEEEEcccchHHHH-HHHHHHhhhhhcCCcEEEEE-ecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~Ai-A~~Lrds~~~~g~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavp 187 (462)
.||||||+|.||..+ +.+|++. +++++.. ++..++..+.+++.|+.. ...+.+++++ ++|+|++++|
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~------~~~~vav~d~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp 71 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT------GGEVVSMMSTSAERGAAYATENGIGK---SVTSVEELVGDPDVDAVYVSTT 71 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT------TCEEEEEECSCHHHHHHHHHHTTCSC---CBSCHHHHHTCTTCCEEEECSC
T ss_pred CeEEEEcccHHHHHhhhHHhhcC------CCeEEEEECCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 479999999999998 8888775 7776543 444334445566677631 1568888886 5999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE
Q 012479 188 DAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL 208 (462)
+..+.++..+. |+.|+.|
T Consensus 72 ~~~h~~~~~~a---l~~Gk~v 89 (332)
T 2glx_A 72 NELHREQTLAA---IRAGKHV 89 (332)
T ss_dssp GGGHHHHHHHH---HHTTCEE
T ss_pred hhHhHHHHHHH---HHCCCeE
Confidence 99998877754 3456643
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=80.39 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=60.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH--cC------ceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|+||.++|..|... |+ +|++.++...+....+.. .+ .... ..+ .+++++||+
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~------g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~---~~d-~~~~~~aDv 70 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY---AGD-YADLKGSDV 70 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE---ECC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEE---eCC-HHHhCCCCE
Confidence 5899999999999999999988 87 777766543322222221 11 1110 224 467899999
Q ss_pred EEEeecchh----------------HHHHHHHHHhcCCCCcE-EEEeccch
Q 012479 182 VLLLISDAA----------------QADNYEKIFSCMKPNSI-LGLSHGFL 215 (462)
Q Consensus 182 ViLavpd~a----------------~~~vl~eI~~~Lk~gai-L~~a~G~~ 215 (462)
||+++|... ..+++++|.++. |+.+ |..+-+..
T Consensus 71 Viiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~~ 120 (319)
T 1a5z_A 71 VIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPVD 120 (319)
T ss_dssp EEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcHH
Confidence 999999643 345666677764 5554 44444544
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=5.5e-06 Score=84.65 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=68.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-cCcee--cCCCcCCHhhhhccCCeE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLGDIYETISGSDLV 182 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~--~d~~~~~~~eav~~ADvV 182 (462)
..++| ++|+|||+|.+|.+.++.++.. |.+|++.++. ....+.+++ .|... ......+..+.++++|+|
T Consensus 164 ~~l~g-~~V~ViG~G~iG~~~a~~a~~~------Ga~V~~~d~~-~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvV 235 (377)
T 2vhw_A 164 PGVEP-ADVVVIGAGTAGYNAARIANGM------GATVTVLDIN-IDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLV 235 (377)
T ss_dssp TTBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEE
Confidence 35889 9999999999999999999988 8887766654 333444444 45421 000012466788999999
Q ss_pred EEeecchh--HHHH-HHHHHhcCCCCcEEEEec
Q 012479 183 LLLISDAA--QADN-YEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 183 iLavpd~a--~~~v-l~eI~~~Lk~gaiL~~a~ 212 (462)
|.+++... ...+ .++..+.|++|.+|++++
T Consensus 236 i~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 236 IGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp EECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred EECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 99885322 1122 346677899999888775
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.3e-05 Score=67.31 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=54.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH---hh-hhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YE-TISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~e-av~~ADvViLavp 187 (462)
++|.|||+|.+|..+++.|++. |++|++.++. +...+.+++.|+....+...+. .+ -++++|+||+++|
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~~-~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS------DIPLVVIETS-RTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCEEEECcCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 5899999999999999999998 9988766554 5556677777875321112222 12 2578999999999
Q ss_pred chhHHH
Q 012479 188 DAAQAD 193 (462)
Q Consensus 188 d~a~~~ 193 (462)
+.....
T Consensus 81 ~~~~n~ 86 (140)
T 3fwz_A 81 NGYEAG 86 (140)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 876554
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.5e-06 Score=81.55 Aligned_cols=79 Identities=11% Similarity=0.141 Sum_probs=60.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEE-ecCCchhHHHHHHcCceecCCCcCCHhhhh--ccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~eav--~~ADvViLavpd 188 (462)
.||||||+|.||..++.+|++. .+++++.. ++..++..+.+++.|+.. ..+.++++ .+.|+|++++|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 76 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKS-----EKLKLVTCYSRTEDKREKFGKRYNCAG----DATMEALLAREDVEMVIITVPN 76 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEECSSHHHHHHHHHHHTCCC----CSSHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEEccCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEEeCCh
Confidence 5899999999999999999865 15665533 444344445566678764 67899998 679999999999
Q ss_pred hhHHHHHHHHH
Q 012479 189 AAQADNYEKIF 199 (462)
Q Consensus 189 ~a~~~vl~eI~ 199 (462)
..+.++.....
T Consensus 77 ~~h~~~~~~al 87 (354)
T 3db2_A 77 DKHAEVIEQCA 87 (354)
T ss_dssp TSHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988776543
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=80.16 Aligned_cols=85 Identities=12% Similarity=0.159 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd~ 189 (462)
.||||||+|.||..++.+|++. .+++++...+.+....+.+.+.|+.. ..+.+++++ +.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp~~ 76 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAA-----DNLEVHGVFDILAEKREAAAQKGLKI----YESYEAVLADEKVDAVLIATPND 76 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTS-----TTEEEEEEECSSHHHHHHHHTTTCCB----CSCHHHHHHCTTCCEEEECSCGG
T ss_pred CcEEEECcCHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHhcCCce----eCCHHHHhcCCCCCEEEEcCCcH
Confidence 5899999999999999999875 15566544455555556677778764 678999987 789999999999
Q ss_pred hHHHHHHHHHhcCCCCcEE
Q 012479 190 AQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL 208 (462)
.+.++....+ +.|+-|
T Consensus 77 ~h~~~~~~al---~aGkhV 92 (359)
T 3e18_A 77 SHKELAISAL---EAGKHV 92 (359)
T ss_dssp GHHHHHHHHH---HTTCEE
T ss_pred HHHHHHHHHH---HCCCCE
Confidence 9988876543 345543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.99 E-value=6.9e-06 Score=85.31 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=71.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC-------------CCc----
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------------GTL---- 169 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d-------------~~~---- 169 (462)
-+.+ .||+|||+|.+|...++.++.. |.+|++.+++.. ..+.+++.|..... +..
T Consensus 187 ~v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~~-~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s 258 (405)
T 4dio_A 187 TVPA-AKIFVMGAGVAGLQAIATARRL------GAVVSATDVRPA-AKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMS 258 (405)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSTT-HHHHHHHTTCEECCCCC-----------------
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHH-HHHHHHHcCCceeecccccccccccccchhhhcc
Confidence 3566 8999999999999999999988 988877666544 45666767763100 001
Q ss_pred --------CCHhhhhccCCeEEEee--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 012479 170 --------GDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (462)
Q Consensus 170 --------~~~~eav~~ADvViLav--pd~a~~~vl-~eI~~~Lk~gaiL~~a~ 212 (462)
.++++++++||+||.++ |......++ ++....||+|++|++++
T Consensus 259 ~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 259 GEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 14678899999999885 543333333 47888899999999886
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.1e-05 Score=77.41 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=61.0
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
.+|||||+|.||.. ++..|++. .+++++ +.++..++..+.+++.|+.. ..+.+++.++.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCc----cCcHHHhhcCCCEEEEeCCch
Confidence 68999999999996 88888763 156665 44555445455666677653 456776667899999999999
Q ss_pred hHHHHHHHHHhcCCCCcE
Q 012479 190 AQADNYEKIFSCMKPNSI 207 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gai 207 (462)
.+.++..... +.|+.
T Consensus 77 ~h~~~~~~al---~~G~~ 91 (319)
T 1tlt_A 77 SHFDVVSTLL---NAGVH 91 (319)
T ss_dssp HHHHHHHHHH---HTTCE
T ss_pred hHHHHHHHHH---HcCCe
Confidence 9988777543 35653
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-05 Score=78.50 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=56.9
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav-~~ADvViLavpd~ 189 (462)
.||||||+|.||. .++.+|+.. .+.++++.++..++..+.+++.|+.. ...+..+++ +++|+|++++|+.
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~-----~~~~l~v~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~D~V~i~tp~~ 74 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 74 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHcCCCc---cccCHHHHhhcCCCEEEEECCch
Confidence 5899999999998 599998764 15676655554444445666677641 023445555 7899999999999
Q ss_pred hHHHHHHHH
Q 012479 190 AQADNYEKI 198 (462)
Q Consensus 190 a~~~vl~eI 198 (462)
.+.++..+.
T Consensus 75 ~h~~~~~~a 83 (323)
T 1xea_A 75 VHSTLAAFF 83 (323)
T ss_dssp GHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 998887654
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.1e-05 Score=79.25 Aligned_cols=86 Identities=20% Similarity=0.279 Sum_probs=62.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcC--ceecCCCcCCHhhhhc--cCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAG--FTEENGTLGDIYETIS--GSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G--~~~~d~~~~~~~eav~--~ADvViLav 186 (462)
.||||||+|.||..++.+|+...+ +++++ +.++..++..+.+++.| ... ..+.+++++ +.|+|++++
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~~----~~~lvav~d~~~~~~~~~a~~~g~~~~~----~~~~~~ll~~~~~D~V~i~t 95 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTVS----GVEVVAVCDIVAGRAQAALDKYAIEAKD----YNDYHDLINDKDVEVVIITA 95 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCT----TEEEEEEECSSTTHHHHHHHHHTCCCEE----ESSHHHHHHCTTCCEEEECS
T ss_pred eeEEEECCcHHHHHHHHHHHhhCC----CcEEEEEEeCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEcC
Confidence 589999999999999999983211 56665 34444455556677777 333 678999887 589999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE
Q 012479 187 SDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL 208 (462)
|+..+.++..... +.|+-|
T Consensus 96 p~~~h~~~~~~al---~aGk~V 114 (357)
T 3ec7_A 96 SNEAHADVAVAAL---NANKYV 114 (357)
T ss_dssp CGGGHHHHHHHHH---HTTCEE
T ss_pred CcHHHHHHHHHHH---HCCCCE
Confidence 9999988877543 345533
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.4e-05 Score=68.31 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---Hhhh--hccCC
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET--ISGSD 180 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~ea--v~~AD 180 (462)
..+.+ ++|.|||+|.+|..+++.|++.- |++|++.+++ .+..+.+.+.|+....+...+ ..++ ++++|
T Consensus 35 ~~~~~-~~v~IiG~G~~G~~~a~~L~~~~-----g~~V~vid~~-~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad 107 (183)
T 3c85_A 35 INPGH-AQVLILGMGRIGTGAYDELRARY-----GKISLGIEIR-EEAAQQHRSEGRNVISGDATDPDFWERILDTGHVK 107 (183)
T ss_dssp BCCTT-CSEEEECCSHHHHHHHHHHHHHH-----CSCEEEEESC-HHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCC
T ss_pred cCCCC-CcEEEECCCHHHHHHHHHHHhcc-----CCeEEEEECC-HHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCC
Confidence 44667 89999999999999999998630 5677766554 444566667776421111122 2344 67899
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCC
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPN 205 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~g 205 (462)
+||+++|+......+-.....+.++
T Consensus 108 ~vi~~~~~~~~~~~~~~~~~~~~~~ 132 (183)
T 3c85_A 108 LVLLAMPHHQGNQTALEQLQRRNYK 132 (183)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCChHHHHHHHHHHHHHCCC
Confidence 9999999765543333333334433
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=3e-05 Score=65.96 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=59.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh---hh-hccCCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---ea-v~~ADvVi 183 (462)
+++ ++|.|+|+|.+|..+++.|++. |.+|++..+. ....+.+.+.|.....+...+.+ ++ ++++|+|+
T Consensus 4 ~~~-~~v~I~G~G~iG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi 75 (144)
T 2hmt_A 4 IKN-KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDIN-EEKVNAYASYATHAVIANATEENELLSLGIRNFEYVI 75 (144)
T ss_dssp --C-CSEEEECCSHHHHHHHHHHHHT------TCCCEEEESC-HHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred CcC-CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence 456 8899999999999999999998 8887766654 33333344445421111122222 23 67899999
Q ss_pred Eeecch-hHHHHHHHHHhcCCCCcEEEEecc
Q 012479 184 LLISDA-AQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 184 Lavpd~-a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+++++. .....+......+.+..++..+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 76 VAIGANIQASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp ECCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred ECCCCchHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 999975 332233333344455555555544
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.5e-05 Score=76.47 Aligned_cols=93 Identities=20% Similarity=0.152 Sum_probs=60.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH-------c--CceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------A--GFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~-------~--G~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|+||.++|..|... |+ +|++.++..++....+.+ . ..... ...+. +++++||+
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~------g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~--~t~d~-~a~~~aDi 75 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD------NLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI--GTDDY-ADISGSDV 75 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEE--ECCCH-HHhCCCCE
Confidence 7999999999999999999998 88 877666654322221111 0 11110 02455 78999999
Q ss_pred EEEee--------------cc--hhHHHHHHHHHhcCCCCcEEE-Eeccc
Q 012479 182 VLLLI--------------SD--AAQADNYEKIFSCMKPNSILG-LSHGF 214 (462)
Q Consensus 182 ViLav--------------pd--~a~~~vl~eI~~~Lk~gaiL~-~a~G~ 214 (462)
||+++ +. ....+++++|.++. |+++|. .+...
T Consensus 76 Vi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~ 124 (317)
T 2ewd_A 76 VIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPL 124 (317)
T ss_dssp EEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChH
Confidence 99999 32 22356777888875 566554 44443
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.2e-05 Score=77.19 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=62.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHH--HcCceec-CC--CcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAGFTEE-NG--TLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~--~~G~~~~-d~--~~~~~~eav~~ADvViL 184 (462)
+||+|||.|++|.++|..|... |+ +|++.++...+....+. ..+.... +. ...+..+++++||+||+
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~------g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii 81 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI 81 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEE
Confidence 7999999999999999999988 87 88766654322221122 2333100 00 01112467889999999
Q ss_pred eecchhH----------------HHHHHHHHhcCCCCcEE-EEeccchH
Q 012479 185 LISDAAQ----------------ADNYEKIFSCMKPNSIL-GLSHGFLL 216 (462)
Q Consensus 185 avpd~a~----------------~~vl~eI~~~Lk~gaiL-~~a~G~~i 216 (462)
+++.... .+++++|.++ .++++| ..+-|+.+
T Consensus 82 ~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~ 129 (319)
T 1lld_A 82 TAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDI 129 (319)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHH
Confidence 9953322 2566777775 566654 56667754
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.93 E-value=9e-06 Score=81.44 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=65.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC---ceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
++|+|||+|.||.+++.+|+... ...+|.+++|..++..+.+++.+ +.. . +.+.++++ ++|+|+++||.
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~----~~~~V~v~~r~~~~a~~la~~~~~~~~~~--~-~~~~~e~v-~aDvVi~aTp~ 197 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVF----DIGEVKAYDVREKAAKKFVSYCEDRGISA--S-VQPAEEAS-RCDVLVTTTPS 197 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS----CCCEEEEECSSHHHHHHHHHHHHHTTCCE--E-ECCHHHHT-SSSEEEECCCC
T ss_pred CEEEEEcCcHHHHHHHHHHHHhC----CccEEEEECCCHHHHHHHHHHHHhcCceE--E-ECCHHHHh-CCCEEEEeeCC
Confidence 89999999999999999998740 02367777776555555555432 211 1 46788999 99999999997
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
.. .++. ...+++|++|.+.+.+.
T Consensus 198 ~~--pv~~--~~~l~~G~~V~~ig~~~ 220 (322)
T 1omo_A 198 RK--PVVK--AEWVEEGTHINAIGADG 220 (322)
T ss_dssp SS--CCBC--GGGCCTTCEEEECSCCS
T ss_pred CC--ceec--HHHcCCCeEEEECCCCC
Confidence 43 2221 25688999888776654
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.1e-05 Score=78.00 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=61.6
Q ss_pred CEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCc-hhHHHHHHcCc-eecCCCcCCHhhhhc--cCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEARAAGF-TEENGTLGDIYETIS--GSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~-~~~d~~~~~~~eav~--~ADvViLav 186 (462)
.+|+|||+|.||..++..|+ .. .+++++...+.+. +..+.+++.|. .. ..+.+++++ ++|+|++++
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~-----~~~~~vav~d~~~~~~~~~a~~~g~~~~----~~~~~~~l~~~~~D~V~i~t 79 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKI-----QGVKLVAACALDSNQLEWAKNELGVETT----YTNYKDMIDTENIDAIFIVA 79 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTC-----SSEEEEEEECSCHHHHHHHHHTTCCSEE----ESCHHHHHTTSCCSEEEECS
T ss_pred ceEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEEecCCHHHHHHHHHHhCCCcc----cCCHHHHhcCCCCCEEEEeC
Confidence 68999999999999999998 43 1566554444433 33345566676 32 568888886 699999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE
Q 012479 187 SDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
|+..+.++..+.. +.|+.|.
T Consensus 80 p~~~h~~~~~~al---~~G~~v~ 99 (346)
T 3cea_A 80 PTPFHPEMTIYAM---NAGLNVF 99 (346)
T ss_dssp CGGGHHHHHHHHH---HTTCEEE
T ss_pred ChHhHHHHHHHHH---HCCCEEE
Confidence 9999988776543 4566443
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=78.78 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=60.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||||||+|.||..++.+|+.. .+.+++ +.++..++..+.+.+.|+.. ...+.++++. +.|+|++++|+
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~-----~~~~~~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLA-----GNGEVVAVSSRTLESAQAFANKYHLPK---AYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHH-----CSEEEEEEECSCSSTTCC---CCCCSC---EESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999999876 034544 34444445455666667631 1578999987 79999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEE
Q 012479 189 AAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL 208 (462)
..+.++..... +.|+-|
T Consensus 78 ~~h~~~~~~al---~aGk~V 94 (329)
T 3evn_A 78 QDHYKVAKAAL---LAGKHV 94 (329)
T ss_dssp GGHHHHHHHHH---HTTCEE
T ss_pred HHHHHHHHHHH---HCCCeE
Confidence 99988776543 345533
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=79.13 Aligned_cols=79 Identities=15% Similarity=0.139 Sum_probs=61.0
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeec
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavp 187 (462)
.||||||+|.||. .++.+|++. .+++++ +.++..++..+.+++.|+.. ..+.+|+++ +.|+|++++|
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp 98 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAE-----PLTEVTAIASRRWDRAKRFTERFGGEP----VEGYPALLERDDVDAVYVPLP 98 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHC-----TTEEEEEEEESSHHHHHHHHHHHCSEE----EESHHHHHTCTTCSEEEECCC
T ss_pred eEEEEEcCcHHHHHHHHHHHHhC-----CCeEEEEEEcCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEECCC
Confidence 6899999999998 799999875 145655 44444445556667778875 578999886 5899999999
Q ss_pred chhHHHHHHHHH
Q 012479 188 DAAQADNYEKIF 199 (462)
Q Consensus 188 d~a~~~vl~eI~ 199 (462)
+..+.++.....
T Consensus 99 ~~~h~~~~~~al 110 (350)
T 3rc1_A 99 AVLHAEWIDRAL 110 (350)
T ss_dssp GGGHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999998877644
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.90 E-value=2e-05 Score=78.33 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=60.6
Q ss_pred ccCCCCEEEEEcccchHHHH-HHHHHHhhhhhcCCcEEEE-EecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeE
Q 012479 107 AFNGINQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLV 182 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~Ai-A~~Lrds~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvV 182 (462)
+++.|.||||||+|.||... +..+++. + +.+++. .++..++..+.|++.|+.. ...|.+|+++ +.|+|
T Consensus 19 ~~~~mirigiIG~G~ig~~~~~~~~~~~-~----~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iDaV 90 (350)
T 4had_A 19 YFQSMLRFGIISTAKIGRDNVVPAIQDA-E----NCVVTAIASRDLTRAREMADRFSVPH---AFGSYEEMLASDVIDAV 90 (350)
T ss_dssp ---CCEEEEEESCCHHHHHTHHHHHHHC-S----SEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCSSCSEE
T ss_pred cccCccEEEEEcChHHHHHHHHHHHHhC-C----CeEEEEEECCCHHHHHHHHHHcCCCe---eeCCHHHHhcCCCCCEE
Confidence 45566799999999999865 5666654 1 456553 4444455667778888742 1578999885 57999
Q ss_pred EEeecchhHHHHHHHHHh
Q 012479 183 LLLISDAAQADNYEKIFS 200 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~ 200 (462)
+++||+..+.++..+.+.
T Consensus 91 ~I~tP~~~H~~~~~~al~ 108 (350)
T 4had_A 91 YIPLPTSQHIEWSIKAAD 108 (350)
T ss_dssp EECSCGGGHHHHHHHHHH
T ss_pred EEeCCCchhHHHHHHHHh
Confidence 999999999988776543
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.1e-05 Score=82.25 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=88.4
Q ss_pred HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchh-HHHH-HHH
Q 012479 310 LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYP-CMEI-LYE 387 (462)
Q Consensus 310 ~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~-~~~~-m~e 387 (462)
+|.-.+++.|.+|.+.+.|++|.+++++++++.+.++..++.+.|+++|+|+||+|++ -|..- +.| .+.+ .++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~ 468 (525)
T 3fr7_A 394 AGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTAR--LGSRK---WAPRFDYILTQQ 468 (525)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTHHHHHTHHHHHHHHCHHHHHHHSCHHHH--HHHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHhhhHHHHHHHhhhhhhhhhhhHHHHhhccHhhh--ccccc---chHhHHHHHHHH
Confidence 4666789999999999999999999999999999999999999999999999997544 45431 222 1112 255
Q ss_pred HHHhccCChhhhHHHHhcccccccCCCCcccchhhhcChhHHHhHHHHhcCCCCCC
Q 012479 388 CYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDL 443 (462)
Q Consensus 388 ~~~~i~~G~far~~~~~~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lR~~~~~~~~ 443 (462)
+|..|.+|..+++-+. .+..+|++-++=+.--++||.-++
T Consensus 469 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 508 (525)
T 3fr7_A 469 AFVTVDKDAPINQDLI----------------SNFMSDPVHGAIEVCAELRPTVDI 508 (525)
T ss_dssp HHHHHHTTCCCCHHHH----------------HHHHHCTHHHHHHHHHTTSCSSCC
T ss_pred hHHHhhcCCcchHHHH----------------HHHhhChHHHHHHHHHhcCCCceE
Confidence 8888888887654222 234578888888888899999987
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.3e-05 Score=70.55 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=63.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---Hhhh-hccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET-ISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~ea-v~~ADvViLavp 187 (462)
|||.|||+|.+|..+++.|.+. |++|++.++..++..+.+...|+....+...+ ..++ +++||+||++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~------g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR------KYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT------TCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 5899999999999999999998 99887776654433333444565321111222 2233 788999999999
Q ss_pred chhHHHHHHHHHhcC-CCCcEEEEec
Q 012479 188 DAAQADNYEKIFSCM-KPNSILGLSH 212 (462)
Q Consensus 188 d~a~~~vl~eI~~~L-k~gaiL~~a~ 212 (462)
+.....++..++..+ ....+++-+.
T Consensus 75 ~d~~n~~~~~~a~~~~~~~~iia~~~ 100 (218)
T 3l4b_C 75 RDEVNLFIAQLVMKDFGVKRVVSLVN 100 (218)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEECCC
T ss_pred CcHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 987766666555543 3334555443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.4e-05 Score=63.54 Aligned_cols=92 Identities=16% Similarity=0.048 Sum_probs=62.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcC---CHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~eav~~ADvViLavp 187 (462)
++|.|+|.|.+|.++++.|.+. | .+|++..|.. ...+.....|+........ +..++++++|+||.++|
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~------g~~~v~~~~r~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTS------SNYSVTVADHDL-AALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP 78 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC------SSEEEEEEESCH-HHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCH-HHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence 8999999999999999999998 8 7877766653 3344444455432111122 24467789999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
......+.+.... .|....+..+
T Consensus 79 ~~~~~~~~~~~~~---~g~~~~~~~~ 101 (118)
T 3ic5_A 79 FFLTPIIAKAAKA---AGAHYFDLTE 101 (118)
T ss_dssp GGGHHHHHHHHHH---TTCEEECCCS
T ss_pred chhhHHHHHHHHH---hCCCEEEecC
Confidence 8877666665433 4554444443
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.85 E-value=5.4e-05 Score=75.93 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=62.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEE-EecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.+|||||+|.||..++..|+.. .+++++. .++..++..+.+.+.|+........+.+++++ +.|+|++++|+
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~-----~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 81 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 81 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEECchHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCCh
Confidence 6899999999999999999875 0455543 34443444556677774100011568888886 59999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 012479 189 AAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
..+.++..+. |+.|+.|.
T Consensus 82 ~~h~~~~~~a---l~aGk~V~ 99 (362)
T 1ydw_A 82 SLHVEWAIKA---AEKGKHIL 99 (362)
T ss_dssp GGHHHHHHHH---HTTTCEEE
T ss_pred HHHHHHHHHH---HHCCCeEE
Confidence 9998877654 45666443
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.5e-05 Score=78.42 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=56.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd~ 189 (462)
.+|||||+|.||..++.+|++. .+++++...+.+....+.+.+. +.. ..+.+++++ ++|+|++++|+.
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~-----~~~~~v~v~d~~~~~~~~~~~~-~~~----~~~~~~~l~~~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGL-----PGAALVRLASSNPDNLALVPPG-CVI----ESDWRSVVSAPEVEAVIIATPPA 80 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHC-----TTEEEEEEEESCHHHHTTCCTT-CEE----ESSTHHHHTCTTCCEEEEESCGG
T ss_pred ceEEEECCcHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHhh-Ccc----cCCHHHHhhCCCCCEEEEeCChH
Confidence 6899999999999999999875 0456553444333322221111 322 467888885 799999999999
Q ss_pred hHHHHHHHHHhcCCCCcE
Q 012479 190 AQADNYEKIFSCMKPNSI 207 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gai 207 (462)
.+.++..+. ++.|+.
T Consensus 81 ~h~~~~~~a---l~~Gk~ 95 (315)
T 3c1a_A 81 THAEITLAA---IASGKA 95 (315)
T ss_dssp GHHHHHHHH---HHTTCE
T ss_pred HHHHHHHHH---HHCCCc
Confidence 998887754 344653
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.2e-05 Score=81.01 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=68.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCc-----------------
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL----------------- 169 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~----------------- 169 (462)
.+.| ++|+|||+|.+|...++.++.. |.+|++.+++. ...+.+++.|.....-..
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~v~D~~~-~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~ 240 (401)
T 1x13_A 169 KVPP-AKVMVIGAGVAGLAAIGAANSL------GAIVRAFDTRP-EVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDA 240 (401)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCG-GGHHHHHHTTCEECCC--------CCHHHHHHSHH
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCH-HHHHHHHHcCCEEEEecccccccccccchhhccHH
Confidence 4788 9999999999999999999988 88877766554 445566777765210000
Q ss_pred ------CCHhhhhccCCeEEEe--ecchhHHHHH-HHHHhcCCCCcEEEEec
Q 012479 170 ------GDIYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLSH 212 (462)
Q Consensus 170 ------~~~~eav~~ADvViLa--vpd~a~~~vl-~eI~~~Lk~gaiL~~a~ 212 (462)
.+..++++++|+||.+ +|......++ ++....|++|.+|++.+
T Consensus 241 ~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 241 FIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 0256788899999999 5422222333 45566799999988776
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.3e-05 Score=79.36 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=58.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCc---eecCCCcCCHhhhhccCCeE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~---~~~d~~~~~~~eav~~ADvV 182 (462)
.++| ++|.|||.|.||.+++..|.+. |. +|++.+|..++..+.+++.+. ... ...+..++++++|+|
T Consensus 138 ~l~~-~~vlVlGaGg~g~aia~~L~~~------G~~~V~v~nR~~~ka~~la~~~~~~~~~~~--~~~~~~~~~~~aDiv 208 (297)
T 2egg_A 138 TLDG-KRILVIGAGGGARGIYFSLLST------AAERIDMANRTVEKAERLVREGDERRSAYF--SLAEAETRLAEYDII 208 (297)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECSSHHHHHHHHHHSCSSSCCEE--CHHHHHHTGGGCSEE
T ss_pred CCCC-CEEEEECcHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhhhccCcee--eHHHHHhhhccCCEE
Confidence 4678 9999999999999999999998 87 888888876665666666543 110 012456778899999
Q ss_pred EEeecchhH
Q 012479 183 LLLISDAAQ 191 (462)
Q Consensus 183 iLavpd~a~ 191 (462)
|.++|....
T Consensus 209 In~t~~~~~ 217 (297)
T 2egg_A 209 INTTSVGMH 217 (297)
T ss_dssp EECSCTTCS
T ss_pred EECCCCCCC
Confidence 999997653
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.80 E-value=3.6e-05 Score=76.36 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=62.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEE-EecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||||||+|.||..++.+|+.. . +.+++++. .++..++..+.+++.|+.. ...+.+++++ +.|+|++++|+
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~-~--~~~~~l~av~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp~ 76 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTL-P--RSEHQVVAVAARDLSRAKEFAQKHDIPK---AYGSYEELAKDPNVEVAYVGTQH 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-C--TTTEEEEEEECSSHHHHHHHHHHHTCSC---EESSHHHHHHCTTCCEEEECCCG
T ss_pred cEEEEECchHHHHHHHHHHHhC-C--CCCeEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 5899999999999999999865 0 00244443 3444345556677778731 1578999987 69999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEE
Q 012479 189 AAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL 208 (462)
..+.++..+.. +.|+-|
T Consensus 77 ~~H~~~~~~al---~~GkhV 93 (334)
T 3ohs_X 77 PQHKAAVMLCL---AAGKAV 93 (334)
T ss_dssp GGHHHHHHHHH---HTTCEE
T ss_pred HHHHHHHHHHH---hcCCEE
Confidence 99988776543 345543
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.79 E-value=3e-06 Score=82.43 Aligned_cols=90 Identities=16% Similarity=0.063 Sum_probs=61.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++| +|+|||.|.||.+++..|.+. |. +|++.+|+.++..+.+++.+... ..+..++++++|+||.+|
T Consensus 107 ~~~--~vliiGaGg~a~ai~~~L~~~------G~~~I~v~nR~~~ka~~la~~~~~~~----~~~~~~~~~~aDiVInat 174 (253)
T 3u62_A 107 VKE--PVVVVGAGGAARAVIYALLQM------GVKDIWVVNRTIERAKALDFPVKIFS----LDQLDEVVKKAKSLFNTT 174 (253)
T ss_dssp CCS--SEEEECCSHHHHHHHHHHHHT------TCCCEEEEESCHHHHHTCCSSCEEEE----GGGHHHHHHTCSEEEECS
T ss_pred CCC--eEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcccCC----HHHHHhhhcCCCEEEECC
Confidence 455 899999999999999999998 88 78888886444333333333222 456778899999999999
Q ss_pred cchhHHH--HHHHHHhcCCCCcEEEEe
Q 012479 187 SDAAQAD--NYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 187 pd~a~~~--vl~eI~~~Lk~gaiL~~a 211 (462)
|.....+ .+. ...++++.+|.+.
T Consensus 175 p~gm~p~~~~i~--~~~l~~~~~V~Di 199 (253)
T 3u62_A 175 SVGMKGEELPVS--DDSLKNLSLVYDV 199 (253)
T ss_dssp STTTTSCCCSCC--HHHHTTCSEEEEC
T ss_pred CCCCCCCCCCCC--HHHhCcCCEEEEe
Confidence 8643221 111 1235678877654
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.78 E-value=8.3e-05 Score=72.09 Aligned_cols=145 Identities=13% Similarity=0.080 Sum_probs=86.6
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|+||+|+|+|.||..+++.+.+. +.+++...+.+.. ...|+.. ..++++++ ++|+||-.+.|..
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~------~~eLva~~d~~~~-----~~~gv~v----~~dl~~l~-~~DVvIDft~p~a 66 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK------GHEIVGVIENTPK-----ATTPYQQ----YQHIADVK-GADVAIDFSNPNL 66 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCC-------CCSCB----CSCTTTCT-TCSEEEECSCHHH
T ss_pred ceEEEEECcCHHHHHHHHHHHhC------CCEEEEEEecCcc-----ccCCCce----eCCHHHHh-CCCEEEEeCChHH
Confidence 48999999999999999999887 5554443554332 1367764 56778888 9999997777766
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccchHHHhhhccccCCCCccEEecccCCCchh---------hHHhhhcCccccCCCce
Q 012479 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS---------VRRLYVQGKEINGAGIN 260 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~ga-iL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~---------vr~lf~~G~~~~G~Gv~ 260 (462)
..+.++ ++.|. +|+-+.|++-..++. .....+.+.+ ..+||..--+ ..+.|.+ .-+-
T Consensus 67 ~~~~~~-----l~~g~~vVigTTG~s~e~~~~-l~~aa~~~~v-~~a~N~S~Gv~l~~~~~~~aa~~l~~------~die 133 (243)
T 3qy9_A 67 LFPLLD-----EDFHLPLVVATTGEKEKLLNK-LDELSQNMPV-FFSANMSYGVHALTKILAAAVPLLDD------FDIE 133 (243)
T ss_dssp HHHHHT-----SCCCCCEEECCCSSHHHHHHH-HHHHTTTSEE-EECSSCCHHHHHHHHHHHHHHHHTTT------SEEE
T ss_pred HHHHHH-----HhcCCceEeCCCCCCHHHHHH-HHHHHhcCCE-EEECCccHHHHHHHHHHHHHHHhcCC------CCEE
Confidence 655543 66666 455566886432221 1122344555 6788865333 0111110 0111
Q ss_pred EEEeecc----C-CCHHHHHHHHHHHHHhCC
Q 012479 261 SSFAVHQ----D-VDGRATNVALGWSVALGS 286 (462)
Q Consensus 261 aliav~q----d-~tgea~e~a~al~~aiG~ 286 (462)
++-.|. | +||.++.+++.+ +..|.
T Consensus 134 -I~E~HH~~K~DaPSGTA~~la~~i-~~~~~ 162 (243)
T 3qy9_A 134 -LTEAHHNKKVDAPSGTLEKLYDVI-VSLKE 162 (243)
T ss_dssp -EEEEECTTCCSSSCHHHHHHHHHH-HHHST
T ss_pred -EEEcCCCCCCCCCCHHHHHHHHHH-HhcCc
Confidence 233333 2 677888888777 77764
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.78 E-value=6.1e-05 Score=74.67 Aligned_cols=93 Identities=20% Similarity=0.212 Sum_probs=57.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc--Cc------eecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GF------TEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~--G~------~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|++|.++|..|... |+ +|++.++...+....+.+. +. .. ...+ .+++++||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~------g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i---~~~~-~~a~~~aDv 70 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR------GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRV---WHGG-HSELADAQV 70 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEE---EEEC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEE---EECC-HHHhCCCCE
Confidence 5899999999999999999988 87 7766655433222223321 11 11 0123 468999999
Q ss_pred EEEeecchhH----------------HHHHHHHHhcCCCCcEEEE-eccch
Q 012479 182 VLLLISDAAQ----------------ADNYEKIFSCMKPNSILGL-SHGFL 215 (462)
Q Consensus 182 ViLavpd~a~----------------~~vl~eI~~~Lk~gaiL~~-a~G~~ 215 (462)
||++++.... .+++++|.++ .|+.+|.. +-...
T Consensus 71 VIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~~ 120 (304)
T 2v6b_A 71 VILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVD 120 (304)
T ss_dssp EEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSHH
T ss_pred EEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCchH
Confidence 9999954322 4555667776 57776543 43443
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=5.7e-05 Score=77.73 Aligned_cols=75 Identities=23% Similarity=0.322 Sum_probs=58.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++| ++|+|||+|.||.++++.|+.. |. +|++.+|...+..+.+.+.|.... ...+..+++.++|+||.+
T Consensus 164 ~l~g-~~VlIiGaG~iG~~~a~~l~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~l~~~l~~aDvVi~a 234 (404)
T 1gpj_A 164 SLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEAV--RFDELVDHLARSDVVVSA 234 (404)
T ss_dssp CCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEEC--CGGGHHHHHHTCSEEEEC
T ss_pred cccC-CEEEEEChHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcee--cHHhHHHHhcCCCEEEEc
Confidence 3688 9999999999999999999998 98 888877765554467777776421 124567788999999999
Q ss_pred ecchh
Q 012479 186 ISDAA 190 (462)
Q Consensus 186 vpd~a 190 (462)
+|...
T Consensus 235 t~~~~ 239 (404)
T 1gpj_A 235 TAAPH 239 (404)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 98544
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=5.1e-05 Score=77.52 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=68.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--CCC-------------cCC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------------LGD 171 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~-------------~~~ 171 (462)
.+.| ++|+|||+|.+|.+.++.++.. |.+|++.+++.. ..+.+++.|.... +.. ..+
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~~~d~~~~-~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s 240 (384)
T 1l7d_A 169 TVPP-ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVRAA-TKEQVESLGGKFITVDDEAMKTAETAGGYAKEMG 240 (384)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCST-THHHHHHTTCEECCC-------------------
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHcCCeEEeecccccccccccccchhhcC
Confidence 5688 9999999999999999999988 888776665543 4566666776421 000 000
Q ss_pred ----------HhhhhccCCeEEEee--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 012479 172 ----------IYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (462)
Q Consensus 172 ----------~~eav~~ADvViLav--pd~a~~~vl-~eI~~~Lk~gaiL~~a~ 212 (462)
..+.++++|+||.++ |......++ ++....|++|.+|++.+
T Consensus 241 ~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 241 EEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp ----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 567788999999998 422122233 45667799999988776
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=5.8e-06 Score=81.61 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=61.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++| +++.|||.|-+|.+++..|.+. |. +|++.+|+.++..+.+. .+.. ....+..++++++|+||.+
T Consensus 114 ~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~--~~~~--~~~~~~~~~~~~aDiVIna 182 (277)
T 3don_A 114 GIED-AYILILGAGGASKGIANELYKI------VRPTLTVANRTMSRFNNWSL--NINK--INLSHAESHLDEFDIIINT 182 (277)
T ss_dssp TGGG-CCEEEECCSHHHHHHHHHHHTT------CCSCCEEECSCGGGGTTCCS--CCEE--ECHHHHHHTGGGCSEEEEC
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHH--hccc--ccHhhHHHHhcCCCEEEEC
Confidence 4678 9999999999999999999998 88 78888887555433332 2221 0133566778899999999
Q ss_pred ecchhHHHHHHHH-HhcCCCCcEEEEe
Q 012479 186 ISDAAQADNYEKI-FSCMKPNSILGLS 211 (462)
Q Consensus 186 vpd~a~~~vl~eI-~~~Lk~gaiL~~a 211 (462)
||......+-..+ ...++++.+|.|+
T Consensus 183 Tp~Gm~~~~~~~l~~~~l~~~~~V~D~ 209 (277)
T 3don_A 183 TPAGMNGNTDSVISLNRLASHTLVSDI 209 (277)
T ss_dssp CC-------CCSSCCTTCCSSCEEEES
T ss_pred ccCCCCCCCcCCCCHHHcCCCCEEEEe
Confidence 9976443220001 2346677777665
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00014 Score=72.00 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=61.1
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcC-ceecCCCcCCHhhhhc--cCCeEEEee
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAG-FTEENGTLGDIYETIS--GSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G-~~~~d~~~~~~~eav~--~ADvViLav 186 (462)
.+|||||+|.+|. .++.+|+.. +++++ +.++..++..+.+++.| ... ..+.+++++ +.|+|++++
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~------~~~lvav~d~~~~~~~~~a~~~~~~~~----~~~~~~ll~~~~~D~V~i~t 74 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDA------GAELAGVFESDSDNRAKFTSLFPSVPF----AASAEQLITDASIDLIACAV 74 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHT------TCEEEEEECSCTTSCHHHHHHSTTCCB----CSCHHHHHTCTTCCEEEECS
T ss_pred cEEEEECCChHHHHHhhhhhcCC------CcEEEEEeCCCHHHHHHHHHhcCCCcc----cCCHHHHhhCCCCCEEEEeC
Confidence 6899999999995 678888765 77754 44555555566677774 332 578899886 689999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE
Q 012479 187 SDAAQADNYEKIFSCMKPNSI 207 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gai 207 (462)
|+..+.++....+ +.|+.
T Consensus 75 p~~~h~~~~~~al---~aGkh 92 (336)
T 2p2s_A 75 IPCDRAELALRTL---DAGKD 92 (336)
T ss_dssp CGGGHHHHHHHHH---HTTCE
T ss_pred ChhhHHHHHHHHH---HCCCc
Confidence 9999988776543 34653
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.70 E-value=6.1e-05 Score=75.04 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=61.5
Q ss_pred cccCCCC--EEEEEcccchHHHHHHHHHHhhhhh--cCCcEEEE-EecCCchhHHHHHHcCceecCCCcCCHhhhhc--c
Q 012479 106 DAFNGIN--QIGVIGWGSQGPAQAQNLRDSLAEA--KSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G 178 (462)
Q Consensus 106 ~~l~gik--kIgIIG~G~mG~AiA~~Lrds~~~~--g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ 178 (462)
.+++.|| ||||||+|.||..++.+++....-. -.+.+++. .++..++..+.+++.|+.. ...|.+|+++ +
T Consensus 18 ~~~~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~ 94 (393)
T 4fb5_A 18 LYFQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEK---ATADWRALIADPE 94 (393)
T ss_dssp ------CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSE---EESCHHHHHHCTT
T ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCe---ecCCHHHHhcCCC
Confidence 4566655 6999999999999998876530000 00335443 4444556667788888742 1578999885 5
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEE
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
.|+|+++||+..+.++....+. .|+-|
T Consensus 95 iDaV~IatP~~~H~~~a~~al~---aGkhV 121 (393)
T 4fb5_A 95 VDVVSVTTPNQFHAEMAIAALE---AGKHV 121 (393)
T ss_dssp CCEEEECSCGGGHHHHHHHHHH---TTCEE
T ss_pred CcEEEECCChHHHHHHHHHHHh---cCCeE
Confidence 7999999999999988776443 45543
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=72.81 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=55.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
.||+|||+|+||..++..|++. .+++++...+.+.... ++.|+.. ....++.+. +++|+|++|+|+..+
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~-----~~~elvav~d~~~~~~---~~~g~~~--~~~~~l~~~-~~~DvViiatp~~~h 78 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREA-----PDFEIAGIVRRNPAEV---PFELQPF--RVVSDIEQL-ESVDVALVCSPSREV 78 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECC----------CCTTS--CEESSGGGS-SSCCEEEECSCHHHH
T ss_pred CEEEEECChHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHH---HHcCCCc--CCHHHHHhC-CCCCEEEECCCchhh
Confidence 5899999999999999999874 1567653344433322 2256431 113344444 789999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 012479 192 ADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL~~a 211 (462)
.++.... ++.|+.|.+.
T Consensus 79 ~~~~~~a---l~aG~~Vi~e 95 (304)
T 3bio_A 79 ERTALEI---LKKGICTADS 95 (304)
T ss_dssp HHHHHHH---HTTTCEEEEC
T ss_pred HHHHHHH---HHcCCeEEEC
Confidence 8877654 4457765544
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.67 E-value=7.4e-05 Score=76.19 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=63.9
Q ss_pred CEEEEEcccc---hHHHHHHHHHHhhhhhcCCcEEEE--EecCCchhHHHHHHcCceecCCCcCCHhhhhcc-------C
Q 012479 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKV--GLRKGSRSFAEARAAGFTEENGTLGDIYETISG-------S 179 (462)
Q Consensus 112 kkIgIIG~G~---mG~AiA~~Lrds~~~~g~G~~Viv--g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~-------A 179 (462)
.||||||+|. ||..++.+++... +++++. .++..++..+.+++.|+.. .....+.+|++++ .
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~~-----~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~v 86 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRDN-----TFVLVAGAFDIDPIRGSAFGEQLGVDS-ERCYADYLSMFEQEARRADGI 86 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGGG-----SEEEEEEECCSSHHHHHHHHHHTTCCG-GGBCSSHHHHHHHHTTCTTCC
T ss_pred ceEEEEcCCccchhHHHHHHHHhhCC-----CeEEEEEEeCCCHHHHHHHHHHhCCCc-ceeeCCHHHHHhcccccCCCC
Confidence 5899999999 9999999988760 356653 3444445566677888831 1126789998865 8
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEE
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
|+|++++|+..+.++....+. .|+-|
T Consensus 87 D~V~i~tp~~~H~~~~~~al~---aGkhV 112 (398)
T 3dty_A 87 QAVSIATPNGTHYSITKAALE---AGLHV 112 (398)
T ss_dssp SEEEEESCGGGHHHHHHHHHH---TTCEE
T ss_pred CEEEECCCcHHHHHHHHHHHH---CCCeE
Confidence 999999999999888776443 45543
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.65 E-value=6.3e-05 Score=76.40 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=60.5
Q ss_pred CEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeec
Q 012479 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavp 187 (462)
.||||||+| .||..++.+|+.. .+++++...+.+ ++..+.+++.|+.. ..+.+|++++ .|+|++++|
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~ell~~~~vD~V~i~tp 73 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHH-----PDAQIVAACDPNEDVRERFGKEYGIPV----FATLAEMMQHVQMDAVYIASP 73 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHC-----TTEEEEEEECSCHHHHHHHHHHHTCCE----ESSHHHHHHHSCCSEEEECSC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhC-----CCeEEEEEEeCCHHHHHHHHHHcCCCe----ECCHHHHHcCCCCCEEEEcCC
Confidence 589999999 9999999999875 155665444443 44445667778764 6789999874 999999999
Q ss_pred chhHHHHHHHHH
Q 012479 188 DAAQADNYEKIF 199 (462)
Q Consensus 188 d~a~~~vl~eI~ 199 (462)
+..+.++....+
T Consensus 74 ~~~H~~~~~~al 85 (387)
T 3moi_A 74 HQFHCEHVVQAS 85 (387)
T ss_dssp GGGHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999988777544
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=4.2e-05 Score=76.30 Aligned_cols=85 Identities=9% Similarity=0.171 Sum_probs=57.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
.||+|||+|+||..++.+|.++ .+++++...+.+... +.+ .|+.. ..++++++.++|+|++++|+..+
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~-----~~~elvav~d~~~~~-~~~--~gv~~----~~d~~~ll~~~DvViiatp~~~h 71 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL-DTK--TPVFD----VADVDKHADDVDVLFLCMGSATD 71 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC-SSS--SCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred CEEEEEeecHHHHHHHHHHhcC-----CCCEEEEEEcCCHHH-hhc--CCCce----eCCHHHHhcCCCEEEEcCCcHHH
Confidence 5899999999999999999875 145554333333222 222 46543 45677777889999999999887
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 012479 192 ADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL~~a 211 (462)
.+.+. ..++.|..|.+.
T Consensus 72 ~~~~~---~al~aG~~Vv~e 88 (320)
T 1f06_A 72 IPEQA---PKFAQFACTVDT 88 (320)
T ss_dssp HHHHH---HHHTTTSEEECC
T ss_pred HHHHH---HHHHCCCEEEEC
Confidence 55544 344567755443
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00024 Score=71.27 Aligned_cols=88 Identities=19% Similarity=0.146 Sum_probs=57.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH-------c--C--ceecCCCcCCHhhhhccC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------A--G--FTEENGTLGDIYETISGS 179 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~-------~--G--~~~~d~~~~~~~eav~~A 179 (462)
+||+|||.|+||.++|..|... |+ +|++.++..++....+.. . . +.. +.+. +++++|
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~------g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~----t~d~-~al~~a 83 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK------DLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG----ENNY-EYLQNS 83 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE----ESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE----CCCH-HHHCCC
Confidence 6999999999999999999988 88 866655543322211111 0 1 111 2456 789999
Q ss_pred CeEEEee--cc--------------hhHHHHHHHHHhcCCCCcEEEEe
Q 012479 180 DLVLLLI--SD--------------AAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 180 DvViLav--pd--------------~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|+||+++ |. ....+++++|.++. |+.+|.++
T Consensus 84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~ 130 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI 130 (328)
T ss_dssp SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 9999998 42 11344566666665 66665443
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=77.63 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=71.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.|.| ++++|+|+|.+|.++|+.|+.. |.+|++.++. +.....+...|+. +.+.+++++.+|+|+.++
T Consensus 262 ~L~G-KtVvVtGaGgIG~aiA~~Laa~------GA~Viv~D~~-~~~a~~Aa~~g~d-----v~~lee~~~~aDvVi~at 328 (488)
T 3ond_A 262 MIAG-KVAVVAGYGDVGKGCAAALKQA------GARVIVTEID-PICALQATMEGLQ-----VLTLEDVVSEADIFVTTT 328 (488)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCGGGTTTTCSEEEECS
T ss_pred cccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHhCCc-----cCCHHHHHHhcCEEEeCC
Confidence 4789 9999999999999999999998 9988776554 4445566677876 467889999999999887
Q ss_pred cchhHHHHH-HHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl-~eI~~~Lk~gaiL~~a~G~ 214 (462)
.... ++ .+....|+++.+|+.++.+
T Consensus 329 G~~~---vl~~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 329 GNKD---IIMLDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp SCSC---SBCHHHHTTSCTTEEEEESSST
T ss_pred CChh---hhhHHHHHhcCCCeEEEEcCCC
Confidence 5332 23 2466789999988876644
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.61 E-value=8.1e-05 Score=75.55 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=67.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-cCceec-C-CCcCCHhhhhccCCeE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEE-N-GTLGDIYETISGSDLV 182 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~-d-~~~~~~~eav~~ADvV 182 (462)
..+++ ++|+|||.|.+|.++++.++.. |.+|++.+++.. ..+.+.+ .|.... + ....+.+++++++|+|
T Consensus 162 ~~l~~-~~V~ViGaG~iG~~~a~~l~~~------Ga~V~~~d~~~~-~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvV 233 (369)
T 2eez_A 162 PGVAP-ASVVILGGGTVGTNAAKIALGM------GAQVTILDVNHK-RLQYLDDVFGGRVITLTATEANIKKSVQHADLL 233 (369)
T ss_dssp TBBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHhcCceEEEecCCHHHHHHHHhCCCEE
Confidence 35888 9999999999999999999988 988877766533 3444443 443210 0 0022456788899999
Q ss_pred EEeecchh--HHH-HHHHHHhcCCCCcEEEEec
Q 012479 183 LLLISDAA--QAD-NYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 183 iLavpd~a--~~~-vl~eI~~~Lk~gaiL~~a~ 212 (462)
|.+++... ... +.++..+.|++|.+|++.+
T Consensus 234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp EECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred EECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 99998542 122 2356778899998887665
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0003 Score=69.81 Aligned_cols=70 Identities=19% Similarity=0.096 Sum_probs=45.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH--HcCc-------eecCCCcCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAGF-------TEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~--~~G~-------~~~d~~~~~~~eav~~ADvV 182 (462)
+||+|||.|++|.++|..|... +.|.+|++.++...+....+. ..+. .. ..+.+.++ +++||+|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~----~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i--~~t~d~~~-l~~aDvV 73 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEK----QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKV--TGSNDYAD-TANSDIV 73 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEE--EEESCGGG-GTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEE--EECCCHHH-HCCCCEE
Confidence 5899999999999999999875 115677766665433222221 1110 10 01245655 8999999
Q ss_pred EEeecc
Q 012479 183 LLLISD 188 (462)
Q Consensus 183 iLavpd 188 (462)
|+++|.
T Consensus 74 iiav~~ 79 (310)
T 1guz_A 74 IITAGL 79 (310)
T ss_dssp EECCSC
T ss_pred EEeCCC
Confidence 999964
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00043 Score=60.72 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=60.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH---HHHHHcCceecCCCcCC---Hhhh-hccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGD---IYET-ISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~---~~A~~~G~~~~d~~~~~---~~ea-v~~ADvViL 184 (462)
++|.|+|+|.+|..+++.|.+. |++|++..+...+.. ......|+....+...+ ..++ ++++|+|++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~------g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence 6899999999999999999998 888877766433222 22223354321111222 2344 789999999
Q ss_pred eecchhHHHHHHHHHhcCCC-CcEEEEecc
Q 012479 185 LISDAAQADNYEKIFSCMKP-NSILGLSHG 213 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~-gaiL~~a~G 213 (462)
++++......+..++..+.+ ..++..+.+
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~ 107 (153)
T 1id1_A 78 LSDNDADNAFVVLSAKDMSSDVKTVLAVSD 107 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSSSCEEEECSS
T ss_pred ecCChHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 99987665555444444423 345554443
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00031 Score=70.59 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=59.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH-------cCceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
+||+|||.|.+|.++|..|... |+ +|++.++..++....+.. .+....=..+.+.++++++||+||
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~------g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi 83 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 83 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEE
Confidence 6999999999999999999988 87 866665543322221111 111100001357777999999999
Q ss_pred Eee--cch--h-----------------HHHHHHHHHhcCCCCcEEEEe
Q 012479 184 LLI--SDA--A-----------------QADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 184 Lav--pd~--a-----------------~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+++ |.. . ..+++++|..+. |+.+|..+
T Consensus 84 ~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~ 131 (331)
T 1pzg_A 84 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVV 131 (331)
T ss_dssp ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred EccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEE
Confidence 998 521 1 344556666664 66665544
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00011 Score=73.20 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=61.1
Q ss_pred EEEEEcccchHHHHHHHHHHhhh--hhcCCcEEEE-EecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeec
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~--~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavp 187 (462)
+|||||+|.||..++.+++.... ....+.+++. .++..++..+.+++.|+.. ...|.+|+++ +.|+|+++||
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~---~~~d~~~ll~~~~iDaV~I~tP 84 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWST---TETDWRTLLERDDVQLVDVCTP 84 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESCHHHHTTCTTCSEEEECSC
T ss_pred cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 78999999999999999886410 0000124443 3444445556777788742 1578999885 5799999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE
Q 012479 188 DAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL 208 (462)
+..|.++....+ +.|+-|
T Consensus 85 ~~~H~~~~~~al---~aGkhV 102 (390)
T 4h3v_A 85 GDSHAEIAIAAL---EAGKHV 102 (390)
T ss_dssp GGGHHHHHHHHH---HTTCEE
T ss_pred hHHHHHHHHHHH---HcCCCc
Confidence 999998877543 345543
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00012 Score=75.23 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=62.8
Q ss_pred CEEEEEcccc---hHHHHHHHHHHhhhhhcCC-cEEEE--EecCCchhHHHHHHcCceecCCCcCCHhhhhcc-------
Q 012479 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV--GLRKGSRSFAEARAAGFTEENGTLGDIYETISG------- 178 (462)
Q Consensus 112 kkIgIIG~G~---mG~AiA~~Lrds~~~~g~G-~~Viv--g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~------- 178 (462)
.||||||+|. ||..++..++.. + ++++. .++..++..+.+++.|+.. .....+.++++++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 110 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD------DHYELVAGALSSTPEKAEASGRELGLDP-SRVYSDFKEMAIREAKLKNG 110 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT------SCEEEEEEECCSSHHHHHHHHHHHTCCG-GGBCSCHHHHHHHHHHCTTC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC------CCcEEEEEEeCCCHHHHHHHHHHcCCCc-ccccCCHHHHHhcccccCCC
Confidence 5899999999 999999998876 4 56553 3444445566677788741 1126789998876
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEE
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
.|+|++++|+..+.++.... |+.|+-|
T Consensus 111 vD~V~I~tp~~~H~~~~~~a---l~aGkhV 137 (417)
T 3v5n_A 111 IEAVAIVTPNHVHYAAAKEF---LKRGIHV 137 (417)
T ss_dssp CSEEEECSCTTSHHHHHHHH---HTTTCEE
T ss_pred CcEEEECCCcHHHHHHHHHH---HhCCCeE
Confidence 89999999999998877654 3456643
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.7e-05 Score=76.87 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=56.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCc---eecCCCcCCHhhhhccCCeE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~---~~~d~~~~~~~eav~~ADvV 182 (462)
.++| +++.|||.|-+|.+++..|.+. |. +|.+.+|..++..+.+++.+- .. ..+.+++.+++|+|
T Consensus 123 ~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~~~~~~~~~~----~~~~~~l~~~aDiI 191 (281)
T 3o8q_A 123 LLKG-ATILLIGAGGAARGVLKPLLDQ------QPASITVTNRTFAKAEQLAELVAAYGEVK----AQAFEQLKQSYDVI 191 (281)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------CCSEEEEEESSHHHHHHHHHHHGGGSCEE----EEEGGGCCSCEEEE
T ss_pred CccC-CEEEEECchHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHhhccCCee----EeeHHHhcCCCCEE
Confidence 4678 9999999999999999999998 96 888888876665566655432 11 23455655889999
Q ss_pred EEeecchhH
Q 012479 183 LLLISDAAQ 191 (462)
Q Consensus 183 iLavpd~a~ 191 (462)
|.+||....
T Consensus 192 InaTp~gm~ 200 (281)
T 3o8q_A 192 INSTSASLD 200 (281)
T ss_dssp EECSCCCC-
T ss_pred EEcCcCCCC
Confidence 999998754
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00013 Score=75.48 Aligned_cols=88 Identities=10% Similarity=0.120 Sum_probs=60.6
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEEE-EecCCchhHHHHHHcCceecC-CCcCCHhhhhc--cCCeEEEee
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d-~~~~~~~eav~--~ADvViLav 186 (462)
.||||||+|.||. .++.+|++. .+++++. .++...+..+.+++.|+...+ ....+.+++++ +.|+|++++
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iat 158 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 158 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred eEEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcC
Confidence 6899999999997 899998764 0456543 344333444556667763100 01568888886 789999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE
Q 012479 187 SDAAQADNYEKIFSCMKPNSI 207 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gai 207 (462)
|+..+.++..... +.|+-
T Consensus 159 p~~~h~~~~~~al---~aGk~ 176 (433)
T 1h6d_A 159 PNSLHAEFAIRAF---KAGKH 176 (433)
T ss_dssp CGGGHHHHHHHHH---HTTCE
T ss_pred CchhHHHHHHHHH---HCCCc
Confidence 9999988877543 34553
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00026 Score=66.46 Aligned_cols=93 Identities=12% Similarity=0.188 Sum_probs=62.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh---hh-hccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---ea-v~~ADvViLavp 187 (462)
++|.|+|+|.+|..+++.|.+. |+ |++.. .++...+.+. .|+....+...+.+ ++ +++||.||++++
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~------g~-v~vid-~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGS------EV-FVLAE-DENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTS------EE-EEEES-CGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCChHHHHHHHHHHhC------Ce-EEEEE-CCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 7899999999999999999988 87 66554 4444455555 66532111122322 33 789999999999
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEEecc
Q 012479 188 DAAQADNYEKIFSCMKPN-SILGLSHG 213 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-aiL~~a~G 213 (462)
+..........+..+.++ .++..+..
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~iia~~~~ 107 (234)
T 2aef_A 81 SDSETIHCILGIRKIDESVRIIAEAER 107 (234)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEECSS
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 876655444445555665 56666654
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00018 Score=71.27 Aligned_cols=85 Identities=8% Similarity=0.064 Sum_probs=59.8
Q ss_pred CCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhh----------cc
Q 012479 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI----------SG 178 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav----------~~ 178 (462)
|.||||||+ |.+|..++..|++. +.+++...+.+......++.. +... ..+.++++ ++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~ 72 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV------GGVLVASLDPATNVGLVDSFFPEAEF----FTEPEAFEAYLEDLRDRGEG 72 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESCHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCce----eCCHHHHHHHhhhhcccCCC
Confidence 479999999 78999999999987 776655555443332223332 2232 56777776 67
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEE
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
.|+|++++|+..+.++....+ +.|+-|
T Consensus 73 vD~V~I~tP~~~H~~~~~~al---~aGkhV 99 (312)
T 3o9z_A 73 VDYLSIASPNHLHYPQIRMAL---RLGANA 99 (312)
T ss_dssp CSEEEECSCGGGHHHHHHHHH---HTTCEE
T ss_pred CcEEEECCCchhhHHHHHHHH---HCCCeE
Confidence 899999999999988877644 345543
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00015 Score=74.29 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=51.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-~ADvViLa 185 (462)
.|+| ++|+|+|+|+||..+|+.|.+. |.+|++.++...+..+.+.+.|... .+.+++.. +||+++.|
T Consensus 170 ~L~G-ktV~V~G~G~VG~~~A~~L~~~------GakVvv~D~~~~~l~~~a~~~ga~~-----v~~~~ll~~~~DIvip~ 237 (364)
T 1leh_A 170 SLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGADA-----VAPNAIYGVTCDIFAPC 237 (364)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCEE-----CCGGGTTTCCCSEEEEC
T ss_pred CCCc-CEEEEECchHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EChHHHhccCCcEeecc
Confidence 6899 9999999999999999999998 9998876655444444566556542 34455544 89999876
Q ss_pred e
Q 012479 186 I 186 (462)
Q Consensus 186 v 186 (462)
.
T Consensus 238 a 238 (364)
T 1leh_A 238 A 238 (364)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00012 Score=72.52 Aligned_cols=91 Identities=12% Similarity=0.214 Sum_probs=67.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.+|+|+|. |.||..++++|++. |++++....+..... +-.|+.. ..+++|+.+ ..|++++++|+
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~------g~~~V~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~Dv~ii~vp~ 80 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLEC------GTKIVGGVTPGKGGQ---NVHGVPV----FDTVKEAVKETDANASVIFVPA 80 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCeEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCEEEEccCH
Confidence 46788898 99999999999998 887554554321100 1257765 578889888 89999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
..+.+++++.... ....+|.++.||..
T Consensus 81 ~~~~~~v~ea~~~-Gi~~vVi~t~G~~~ 107 (294)
T 2yv1_A 81 PFAKDAVFEAIDA-GIELIVVITEHIPV 107 (294)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCH
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999999986653 22336678889864
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00018 Score=73.36 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=62.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhh---hhcCCcEEEEE-ecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLA---EAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~---~~g~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLa 185 (462)
.||||||+|.||..++.++++... +...+.+++.. ++..++..+.|++.|+.. ...|.+|+++ +.|+|+++
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~---~y~d~~~ll~~~~vD~V~I~ 103 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEK---AYGDWRELVNDPQVDVVDIT 103 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEEC
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCe---EECCHHHHhcCCCCCEEEEC
Confidence 379999999999999999987510 00012355433 344445556677788742 1578999885 57999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEE
Q 012479 186 ISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
+|+..+.++..+.+ +.|+-|
T Consensus 104 tp~~~H~~~~~~al---~aGkhV 123 (412)
T 4gqa_A 104 SPNHLHYTMAMAAI---AAGKHV 123 (412)
T ss_dssp SCGGGHHHHHHHHH---HTTCEE
T ss_pred CCcHHHHHHHHHHH---HcCCCe
Confidence 99999998876543 345543
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00021 Score=71.04 Aligned_cols=85 Identities=8% Similarity=0.044 Sum_probs=59.5
Q ss_pred CCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhh-----------c
Q 012479 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI-----------S 177 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav-----------~ 177 (462)
|.||||||+ |.+|..++.+|++. +.+++...+.+......+... +... ..+.++++ +
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~l~~~~~~ 72 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT------GNCLVSAYDINDSVGIIDSISPQSEF----FTEFEFFLDHASNLKRDSAT 72 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCEE----ESSHHHHHHHHHHHTTSTTT
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCcE----ECCHHHHHHhhhhhhhccCC
Confidence 479999999 79999999999987 776655555443322223333 2232 56777776 5
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEE
Q 012479 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
+.|+|++++|+..+.++...... .|+-|
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~---aGkhV 100 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLR---LGCDV 100 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHH---TTCEE
T ss_pred CCcEEEECCCcHHHHHHHHHHHH---CCCeE
Confidence 78999999999999888776543 45543
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00021 Score=70.94 Aligned_cols=91 Identities=13% Similarity=0.241 Sum_probs=66.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--c-CCeEEEeec
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G-SDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~-ADvViLavp 187 (462)
.+|+|+|. |.||..++++|++. |++++....+...-. +-.|+.. ..+++|+.+ . .|++++++|
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~------g~~~v~~VnP~~~g~---~i~G~~v----y~sl~el~~~~~~~DvaIi~vp 80 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEY------GTKVVAGVTPGKGGS---EVHGVPV----YDSVKEALAEHPEINTSIVFVP 80 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHCTTCCEEEECCC
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCcEEEEeCCCCCCc---eECCEee----eCCHHHHhhcCCCCCEEEEecC
Confidence 46777798 99999999999998 888555554432100 1257765 578888876 5 999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
+..+.+++++.... .-..+|.++.||..
T Consensus 81 ~~~~~~~v~ea~~~-Gi~~vVi~t~G~~~ 108 (297)
T 2yv2_A 81 APFAPDAVYEAVDA-GIRLVVVITEGIPV 108 (297)
T ss_dssp GGGHHHHHHHHHHT-TCSEEEECCCCCCH
T ss_pred HHHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 99999999986653 22336678889854
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00036 Score=69.50 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=44.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCceecCCC-------cCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGT-------LGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~-------~~~~~eav~~ADvV 182 (462)
+||+|||.|++|.++|..|+.. |+ +++.. +.+.. ...+...++...... ..+..+++++||+|
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~------~~~~ev~l~-Di~~~-~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvV 78 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVLI-DANES-KAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLV 78 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEE-CSSHH-HHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEE-eCCcc-hHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEE
Confidence 7999999999999999999887 64 55544 44332 222222222110000 12345789999999
Q ss_pred EEeecch
Q 012479 183 LLLISDA 189 (462)
Q Consensus 183 iLavpd~ 189 (462)
|++++..
T Consensus 79 iia~~~~ 85 (316)
T 1ldn_A 79 VICAGAN 85 (316)
T ss_dssp EECCSCC
T ss_pred EEcCCCC
Confidence 9997644
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00027 Score=70.44 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=61.7
Q ss_pred CEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCc-eecCCCcCCHhhhhc--cCCeEEEee
Q 012479 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGF-TEENGTLGDIYETIS--GSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~-~~~d~~~~~~~eav~--~ADvViLav 186 (462)
.+|||||+| .+|..++..|++. +.+++++...+. .++..+.+++.|. .. ..|.+|+++ +.|+|++++
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~~~~~~----~~~~~~ll~~~~vD~V~i~t 90 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPAV----FDSYEELLESGLVDAVDLTL 90 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCEE----ESCHHHHHHSSCCSEEEECC
T ss_pred eeEEEEecCHHHHHHHHHHHHhC----CCceEEEEEEcCCHHHHHHHHHHhCCCcc----cCCHHHHhcCCCCCEEEEeC
Confidence 589999999 8999999999864 114565443444 3444456677776 32 678999886 589999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE
Q 012479 187 SDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL 208 (462)
|+..+.++..+.+ +.|+-|
T Consensus 91 p~~~H~~~~~~al---~aGkhV 109 (340)
T 1zh8_A 91 PVELNLPFIEKAL---RKGVHV 109 (340)
T ss_dssp CGGGHHHHHHHHH---HTTCEE
T ss_pred CchHHHHHHHHHH---HCCCcE
Confidence 9999988776543 345543
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00011 Score=72.17 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=55.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCc---eecCCCcCCHhhhh-ccCCe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETI-SGSDL 181 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~---~~~d~~~~~~~eav-~~ADv 181 (462)
.++| +++.|||.|-+|.+++..|.+. |. +|.+..|+.++..+.+++.+. . ..+.+++. .++|+
T Consensus 117 ~l~~-k~~lvlGaGg~~~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~-----~~~~~~l~~~~~Di 184 (272)
T 3pwz_A 117 PLRN-RRVLLLGAGGAVRGALLPFLQA------GPSELVIANRDMAKALALRNELDHSRLR-----ISRYEALEGQSFDI 184 (272)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------CCSEEEEECSCHHHHHHHHHHHCCTTEE-----EECSGGGTTCCCSE
T ss_pred CccC-CEEEEECccHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhccCCee-----EeeHHHhcccCCCE
Confidence 4678 9999999999999999999998 96 888888876666666666542 2 12333332 78999
Q ss_pred EEEeecchhH
Q 012479 182 VLLLISDAAQ 191 (462)
Q Consensus 182 ViLavpd~a~ 191 (462)
||.+||....
T Consensus 185 vInaTp~gm~ 194 (272)
T 3pwz_A 185 VVNATSASLT 194 (272)
T ss_dssp EEECSSGGGG
T ss_pred EEECCCCCCC
Confidence 9999997654
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=5.8e-05 Score=73.48 Aligned_cols=76 Identities=13% Similarity=-0.003 Sum_probs=53.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc--eecCCCcCCHhhhhc-cCCeEE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--TEENGTLGDIYETIS-GSDLVL 183 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~--~~~d~~~~~~~eav~-~ADvVi 183 (462)
.++| ++|.|||.|.||.+++..|.+. |.+|++.+|+.++..+.+.+.+. .. ...+.+++.+ ++|+||
T Consensus 116 ~~~~-~~vlvlGaGg~g~a~a~~L~~~------G~~v~v~~R~~~~a~~l~~~~~~~~~~---~~~~~~~~~~~~~DivI 185 (272)
T 1p77_A 116 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNI---QAVSMDSIPLQTYDLVI 185 (272)
T ss_dssp CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCE---EEEEGGGCCCSCCSEEE
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHccccCCe---EEeeHHHhccCCCCEEE
Confidence 4678 9999999999999999999998 88898888876655555554332 10 0123344434 899999
Q ss_pred EeecchhHH
Q 012479 184 LLISDAAQA 192 (462)
Q Consensus 184 Lavpd~a~~ 192 (462)
.++|.....
T Consensus 186 n~t~~~~~~ 194 (272)
T 1p77_A 186 NATSAGLSG 194 (272)
T ss_dssp ECCCC----
T ss_pred ECCCCCCCC
Confidence 999987653
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00028 Score=70.59 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=59.1
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhcc--CCeEEEe
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG--SDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~~--ADvViLa 185 (462)
.||||||+|.||. .++..|+.. .+++++...+.+ +..+.+.+ .|... ..+.++++++ .|+|+++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~-~~~~~a~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~ 72 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIR-----ETLEVKTIFDLH-VNEKAAAPFKEKGVNF----TADLNELLTDPEIELITIC 72 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECTT-CCHHHHHHHHTTTCEE----ESCTHHHHSCTTCCEEEEC
T ss_pred eEEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEECCC-HHHHHHHhhCCCCCeE----ECCHHHHhcCCCCCEEEEe
Confidence 5899999999998 577777654 156665444443 44555555 45553 5789999875 8999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEE
Q 012479 186 ISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
+|+..+.++..... +.|+.|
T Consensus 73 tp~~~h~~~~~~al---~aGk~V 92 (349)
T 3i23_A 73 TPAHTHYDLAKQAI---LAGKSV 92 (349)
T ss_dssp SCGGGHHHHHHHHH---HTTCEE
T ss_pred CCcHHHHHHHHHHH---HcCCEE
Confidence 99999988776543 355543
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0006 Score=68.26 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=56.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH--c-----C--ceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--A-----G--FTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~--~-----G--~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|.||.++|..|... |+ +|++.+....+....+.. . + ... ..+.+. +++++||+
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~------g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i--~~t~d~-~al~~aD~ 75 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKV--SGSNTY-DDLAGADV 75 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCE--EEECCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEE--EECCCH-HHhCCCCE
Confidence 7999999999999999999988 87 855544433322111111 1 1 111 012456 88999999
Q ss_pred EEEee--cch-------------------hHHHHHHHHHhcCCCCcEEEEe
Q 012479 182 VLLLI--SDA-------------------AQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 182 ViLav--pd~-------------------a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
||+++ |.. ...++.++|..+. |+.+|.++
T Consensus 76 Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 125 (322)
T 1t2d_A 76 VIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVV 125 (322)
T ss_dssp EEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEEC
T ss_pred EEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 99998 421 2344555666665 67665544
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00021 Score=71.96 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=57.9
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCch-hHHHHHHcCceecCCCcCCHhhhhccC--CeEEEeec
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGS--DLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~-s~~~A~~~G~~~~d~~~~~~~eav~~A--DvViLavp 187 (462)
.||||||+|.||.. ++.+|++. .+++++...+.+.. ..+.+++.+... ...+.++++++. |+|++++|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQM-----QDIRIVAACDSDLERARRVHRFISDIP---VLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTC-----TTEEEEEEECSSHHHHGGGGGTSCSCC---EESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999985 89998764 15666534444333 223333333221 157899998754 99999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE
Q 012479 188 DAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL 208 (462)
+..+.++..+.+ +.|+-|
T Consensus 78 ~~~H~~~~~~al---~aGkhV 95 (359)
T 3m2t_A 78 PQLHFEMGLLAM---SKGVNV 95 (359)
T ss_dssp HHHHHHHHHHHH---HTTCEE
T ss_pred cHHHHHHHHHHH---HCCCeE
Confidence 999988877543 345543
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00038 Score=69.95 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=61.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecC--------------CCcCCHhhhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEEN--------------GTLGDIYETI 176 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d--------------~~~~~~~eav 176 (462)
.||||||+|.||..+++.|... .+++++...+.+ ......++.+|+..-. ....+.++++
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~ 77 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred cEEEEEeEhHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence 5899999999999999999865 145554433333 3334555566642100 0124677888
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 177 ~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
.++|+|++|+|...+.+..... ++.|+.|.+.+.
T Consensus 78 ~~vDvV~~aTp~~~h~~~a~~~---l~aGk~Vi~sap 111 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNKPLY---EKAGVKAIFQGG 111 (334)
T ss_dssp TTCSEEEECCSTTHHHHHHHHH---HHHTCEEEECTT
T ss_pred cCCCEEEECCCccccHHHHHHH---HHcCCceEeecc
Confidence 8999999999999887766543 345665555543
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00016 Score=70.24 Aligned_cols=77 Identities=22% Similarity=0.099 Sum_probs=54.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav-~~ADvViLa 185 (462)
.++| +++.|+|.|.||.+++..|.+. |.+|++.+|+.++..+.+++.+... .-...+.+++. .++|+||.+
T Consensus 116 ~l~~-k~vlViGaGg~g~a~a~~L~~~------G~~V~v~~R~~~~~~~la~~~~~~~-~~~~~~~~~~~~~~~DivVn~ 187 (271)
T 1nyt_A 116 IRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTG-SIQALSMDELEGHEFDLIINA 187 (271)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGS-SEEECCSGGGTTCCCSEEEEC
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHhhccC-CeeEecHHHhccCCCCEEEEC
Confidence 4678 9999999999999999999998 8888888877555555555543200 00022333333 589999999
Q ss_pred ecchhH
Q 012479 186 ISDAAQ 191 (462)
Q Consensus 186 vpd~a~ 191 (462)
+|....
T Consensus 188 t~~~~~ 193 (271)
T 1nyt_A 188 TSSGIS 193 (271)
T ss_dssp CSCGGG
T ss_pred CCCCCC
Confidence 997654
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00018 Score=68.56 Aligned_cols=80 Identities=13% Similarity=0.285 Sum_probs=52.6
Q ss_pred CEEEEEcccchHHHHHHH--HHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQN--LRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~--Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
++|+|||+|++|.++++. .... |++++...+.++..... ...|+.+. ...++++.+++.|+|++++|..
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~------g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~eli~~~D~ViIAvPs~ 156 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNN------NTKISMAFDINESKIGT-EVGGVPVY--NLDDLEQHVKDESVAILTVPAV 156 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHCSSCCEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccC------CcEEEEEEeCCHHHHHh-HhcCCeee--chhhHHHHHHhCCEEEEecCch
Confidence 689999999999999994 3333 67776666655442221 11343321 1456788887679999999999
Q ss_pred hHHHHHHHHHh
Q 012479 190 AQADNYEKIFS 200 (462)
Q Consensus 190 a~~~vl~eI~~ 200 (462)
.+.++.+.+..
T Consensus 157 ~~~ei~~~l~~ 167 (215)
T 2vt3_A 157 AAQSITDRLVA 167 (215)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 88888887654
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00051 Score=69.18 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=57.8
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhhc--cCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav~--~ADvViLavp 187 (462)
.||||||+|.||.. ++..|+.. .+++++...+.+....+ .+. +... ..+.+++++ +.|+|++++|
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~--~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp 76 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSV-----PGLNLAFVASRDEEKVK--RDLPDVTV----IASPEAAVQHPDVDLVVIASP 76 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHHH--HHCTTSEE----ESCHHHHHTCTTCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHHHH--hhCCCCcE----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 77777764 15566544444333222 233 4443 578999987 7899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 012479 188 DAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
+..+.++....+ +.|+.|.
T Consensus 77 ~~~H~~~~~~al---~aGk~Vl 95 (364)
T 3e82_A 77 NATHAPLARLAL---NAGKHVV 95 (364)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred hHHHHHHHHHHH---HCCCcEE
Confidence 999988776543 3465443
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00062 Score=70.47 Aligned_cols=85 Identities=15% Similarity=0.184 Sum_probs=59.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-HH---HcCc---eecCCCcC----CHhhhhc--c
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-AR---AAGF---TEENGTLG----DIYETIS--G 178 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-A~---~~G~---~~~d~~~~----~~~eav~--~ 178 (462)
.+|||||+|.||..++.+|+.. .+++++...+.+....+. ++ +.|+ .. .. +.+++++ +
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~----~~~~~~~~~~ll~~~~ 91 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-----DDVEIVAFADPDPYMVGRAQEILKKNGKKPAKV----FGNGNDDYKNMLKDKN 91 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEE----ECSSTTTHHHHTTCTT
T ss_pred ceEEEEecCHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCce----eccCCCCHHHHhcCCC
Confidence 5899999999999999999864 156665444444433333 32 3453 22 44 8889887 5
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEE
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
.|+|++++|+..+.++..+.+ +.|+.|
T Consensus 92 vD~V~i~tp~~~h~~~~~~al---~aGkhV 118 (444)
T 2ixa_A 92 IDAVFVSSPWEWHHEHGVAAM---KAGKIV 118 (444)
T ss_dssp CCEEEECCCGGGHHHHHHHHH---HTTCEE
T ss_pred CCEEEEcCCcHHHHHHHHHHH---HCCCeE
Confidence 899999999999988776543 456643
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00048 Score=69.43 Aligned_cols=85 Identities=8% Similarity=0.012 Sum_probs=60.6
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeec
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavp 187 (462)
.||||||+|.+|. .++..++.. +++++...+.+ ++..+.+++.|... ...+.+|++++ .|+|++++|
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~------~~~lvav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA------GARLAGFHEKDDALAAEFSAVYADAR---RIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT------TCEEEEEECSCHHHHHHHHHHSSSCC---EESCHHHHHTCTTCCEEEECCC
T ss_pred cEEEEECcCHHHHHHHHHHhhcC------CcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 5899999999994 567777765 77765444443 44456677777431 15789999875 899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE
Q 012479 188 DAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL 208 (462)
+..+.++....+ +.|+-|
T Consensus 98 ~~~H~~~~~~al---~aGkhV 115 (361)
T 3u3x_A 98 SSERAELAIRAM---QHGKDV 115 (361)
T ss_dssp HHHHHHHHHHHH---HTTCEE
T ss_pred hHHHHHHHHHHH---HCCCeE
Confidence 999988776543 345543
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00017 Score=71.99 Aligned_cols=86 Identities=12% Similarity=0.148 Sum_probs=55.7
Q ss_pred CEEEEEcccchHHH-HHHHH-HHhhhhhcCCcEEEEEecCCchhHHHHHH-cCceecCCCcCCHhhhhcc--CCeEEEee
Q 012479 112 NQIGVIGWGSQGPA-QAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISG--SDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~L-rds~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~~~eav~~--ADvViLav 186 (462)
.||||||+|.||.. ++.++ ... .+++++...+.+....+.+.+ .|... ..+.++++++ .|+|++++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~t 73 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRK-----DSWHVAHIFRRHAKPEEQAPIYSHIHF----TSDLDEVLNDPDVKLVVVCT 73 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCT-----TTEEEEEEECSSCCGGGGSGGGTTCEE----ESCTHHHHTCTTEEEEEECS
T ss_pred eEEEEEecCHHHHHHHHHHHHhcC-----CCeEEEEEEcCCHhHHHHHHhcCCCce----ECCHHHHhcCCCCCEEEEcC
Confidence 68999999999986 55524 332 156666334333222233333 34543 5788998876 89999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE
Q 012479 187 SDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
|+..+.++..... +.|+.|.
T Consensus 74 p~~~h~~~~~~al---~aGk~Vl 93 (345)
T 3f4l_A 74 HADSHFEYAKRAL---EAGKNVL 93 (345)
T ss_dssp CGGGHHHHHHHHH---HTTCEEE
T ss_pred ChHHHHHHHHHHH---HcCCcEE
Confidence 9999988776543 4565443
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0015 Score=64.97 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=56.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCc---hhHHHHHHc--CceecCCCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAA--GFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~---~s~~~A~~~--G~~~~d~~~~~~~eav~~ADvViL 184 (462)
+||+|||.|+||.++|..|... |+ ++++.+.... ...+..... .+.. ..+. +++++||+||+
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~------g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~----t~d~-~~l~~aD~Vi~ 83 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAK------GIADRLVLLDLSEGTKGATMDLEIFNLPNVEI----SKDL-SASAHSKVVIF 83 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECCC-----CHHHHHHHTCTTEEE----ESCG-GGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE----eCCH-HHHCCCCEEEE
Confidence 8999999999999999999888 77 7766655432 222222211 1221 2466 78999999999
Q ss_pred eecch---------------hHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDA---------------AQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~---------------a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+.-.. ...++++++..+. |+.+|.++
T Consensus 84 aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~ 124 (303)
T 2i6t_A 84 TVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVA 124 (303)
T ss_dssp CCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEc
Confidence 97211 1234555666654 67765444
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00052 Score=68.90 Aligned_cols=83 Identities=11% Similarity=0.202 Sum_probs=58.1
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhhc--cCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav~--~ADvViLavp 187 (462)
.||||||+|.||.. ++..|+.. .+++++...+.+.. +.+.+. +... ..+.+++++ +.|+|++++|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~--~~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL-----DEYQISKIMTSRTE--EVKRDFPDAEV----VHELEEITNDPAIELVIVTTP 74 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECSCHH--HHHHHCTTSEE----ESSTHHHHTCTTCCEEEECSC
T ss_pred ceEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHH--HHHhhCCCCce----ECCHHHHhcCCCCCEEEEcCC
Confidence 58999999999997 77777654 15666544444332 234445 4443 578899987 7899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE
Q 012479 188 DAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL 208 (462)
+..+.++....+ +.|+-|
T Consensus 75 ~~~H~~~~~~al---~aGkhV 92 (358)
T 3gdo_A 75 SGLHYEHTMACI---QAGKHV 92 (358)
T ss_dssp TTTHHHHHHHHH---HTTCEE
T ss_pred cHHHHHHHHHHH---HcCCeE
Confidence 999988776543 345543
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00047 Score=68.86 Aligned_cols=84 Identities=10% Similarity=0.147 Sum_probs=56.7
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavpd 188 (462)
.||||||+|.||.. ++..|++. .+++++...+.+....+ +...+... ..+.++++++ .|+|++++|+
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~-----~~~~l~av~d~~~~~~~-~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp~ 77 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGT-----PGLELAGVSSSDASKVH-ADWPAIPV----VSDPQMLFNDPSIDLIVIPTPN 77 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHHH-TTCSSCCE----ESCHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHH-hhCCCCce----ECCHHHHhcCCCCCEEEEeCCh
Confidence 58999999999997 88888764 14566544444333222 11123332 5789999875 8999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEE
Q 012479 189 AAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL 208 (462)
..+.++....+ +.|+-|
T Consensus 78 ~~H~~~~~~al---~aGkhV 94 (352)
T 3kux_A 78 DTHFPLAQSAL---AAGKHV 94 (352)
T ss_dssp TTHHHHHHHHH---HTTCEE
T ss_pred HHHHHHHHHHH---HCCCcE
Confidence 99988776543 445533
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00036 Score=68.60 Aligned_cols=67 Identities=19% Similarity=0.039 Sum_probs=54.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
| +++.|||.|-+|.+++..|.+. |.+|.|.+|..++..+.+ +.|+.. .+.+++ .++|+||.+||..
T Consensus 118 ~-k~vlvlGaGGaaraia~~L~~~------G~~v~V~nRt~~ka~~la-~~~~~~-----~~~~~l-~~~DiVInaTp~G 183 (269)
T 3phh_A 118 Y-QNALILGAGGSAKALACELKKQ------GLQVSVLNRSSRGLDFFQ-RLGCDC-----FMEPPK-SAFDLIINATSAS 183 (269)
T ss_dssp C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCTTHHHHH-HHTCEE-----ESSCCS-SCCSEEEECCTTC
T ss_pred C-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHH-HCCCeE-----ecHHHh-ccCCEEEEcccCC
Confidence 7 9999999999999999999998 888999999877777777 677553 233343 3899999999965
Q ss_pred h
Q 012479 190 A 190 (462)
Q Consensus 190 a 190 (462)
.
T Consensus 184 m 184 (269)
T 3phh_A 184 L 184 (269)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00051 Score=72.28 Aligned_cols=83 Identities=7% Similarity=0.115 Sum_probs=59.2
Q ss_pred CEEEEEcc----cchHHHHHHHHHHhhhhhcCCcEEEEEec-CCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 012479 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~~Vivg~r-~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViL 184 (462)
.+|||||+ |.||..++.+|+.. ..+++++...+ ..++..+.+++.|+.. .....+.+|+++ +.|+|++
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~----~~~~~lvav~d~~~~~a~~~a~~~g~~~-~~~~~d~~ell~~~~vD~V~I 114 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 114 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 68999999 99999999999863 01566553334 3344445666777630 011578999885 6899999
Q ss_pred eecchhHHHHHHHHH
Q 012479 185 LISDAAQADNYEKIF 199 (462)
Q Consensus 185 avpd~a~~~vl~eI~ 199 (462)
++|+..+.++....+
T Consensus 115 ~tp~~~H~~~~~~al 129 (479)
T 2nvw_A 115 SVKVPEHYEVVKNIL 129 (479)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHH
Confidence 999999988776543
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0019 Score=64.14 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=44.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH--cC-------ceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AG-------FTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~--~G-------~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|.+|.+++..|... |+ +|++.+....+....+.+ .+ ... ..+.+. +++++||+
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~------g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i--~~t~d~-~a~~~aD~ 73 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRV--TGTNNY-ADTANSDV 73 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE--EEESCG-GGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEE--EECCCH-HHHCCCCE
Confidence 6999999999999999999888 76 755444333222221221 11 111 002455 78999999
Q ss_pred EEEeec
Q 012479 182 VLLLIS 187 (462)
Q Consensus 182 ViLavp 187 (462)
||+++.
T Consensus 74 Vi~a~g 79 (309)
T 1ur5_A 74 IVVTSG 79 (309)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999983
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0011 Score=66.23 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=62.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-h-hHHHHHHcCceecCCCcCCHhhhh-----ccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-R-SFAEARAAGFTEENGTLGDIYETI-----SGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~-s~~~A~~~G~~~~d~~~~~~~eav-----~~ADvViL 184 (462)
.||||||+|.+|..++..|.+.. .+.+++...+.+. + ..+.+++.|+... ..+.++++ ++.|+|++
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~----~~~elvav~d~~~~~~~~~~a~~~g~~~~---~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNA----KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC----SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhC----cCeEEEEEEeCChhhhHHHHHHHcCCCcc---cCCHHHHHhccCCCCCcEEEE
Confidence 58999999999999999995521 1555544444433 3 3567778887421 23456664 45899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++|+..+.++....... ++|+.|++..
T Consensus 78 atp~~~h~~~a~~al~a-~~Gk~Vi~ek 104 (312)
T 1nvm_B 78 ATSASAHVQNEALLRQA-KPGIRLIDLT 104 (312)
T ss_dssp CSCHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred CCChHHHHHHHHHHHHh-CCCCEEEEcC
Confidence 99998888777654332 3477766543
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0005 Score=69.26 Aligned_cols=86 Identities=12% Similarity=0.083 Sum_probs=63.8
Q ss_pred CEEEEEc-ccchHHH-HH----HHHHHhhhhhcCC-cE----------EEEEecCCchhHHHHHHcCceecCCCcCCHhh
Q 012479 112 NQIGVIG-WGSQGPA-QA----QNLRDSLAEAKSD-IV----------VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (462)
Q Consensus 112 kkIgIIG-~G~mG~A-iA----~~Lrds~~~~g~G-~~----------Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~e 174 (462)
.|||||| +|.||.. ++ ..+++. + +. +.+..+..++..+.+++.|+.. ...|.+|
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~------~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~---~~~~~~~ 77 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ------GGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIAR---WTTDLDA 77 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHH------TSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCC---EESCHHH
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhc------CceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCc---ccCCHHH
Confidence 4799999 9999998 88 888776 3 22 1256666666677788888842 1578999
Q ss_pred hhcc--CCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 012479 175 TISG--SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 175 av~~--ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
++++ .|+|++++|+..+.++..+. |+.|+-|.
T Consensus 78 ll~~~~iD~V~i~tp~~~h~~~~~~a---l~~Gk~V~ 111 (383)
T 3oqb_A 78 ALADKNDTMFFDAATTQARPGLLTQA---INAGKHVY 111 (383)
T ss_dssp HHHCSSCCEEEECSCSSSSHHHHHHH---HTTTCEEE
T ss_pred HhcCCCCCEEEECCCchHHHHHHHHH---HHCCCeEE
Confidence 8865 89999999999998877654 34566543
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00045 Score=71.56 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=58.5
Q ss_pred CEEEEEcc----cchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 012479 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViL 184 (462)
.+|||||+ |.||..++.+|++. ..+++++...+.+ ++..+.+++.|+.. .....+.+++++ +.|+|++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~ll~~~~vD~V~i 95 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQL----SSQFQITALYSPKIETSIATIQRLKLSN-ATAFPTLESFASSSTIDMIVI 95 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTCTT-CEEESSHHHHHHCSSCSEEEE
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 58999999 99999999999863 0156665444443 34445566677630 001578999886 6899999
Q ss_pred eecchhHHHHHHHH
Q 012479 185 LISDAAQADNYEKI 198 (462)
Q Consensus 185 avpd~a~~~vl~eI 198 (462)
++|+..+.++....
T Consensus 96 ~tp~~~H~~~~~~a 109 (438)
T 3btv_A 96 AIQVASHYEVVMPL 109 (438)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHH
Confidence 99999998877654
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00045 Score=69.41 Aligned_cols=83 Identities=10% Similarity=0.127 Sum_probs=57.7
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhhcc--CCeEEEeec
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav~~--ADvViLavp 187 (462)
.||||||+|.||.. ++..|+.. .+++++...+.+... .+++. +... ..+.++++++ .|+|++++|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTN-----PHFELYKIVERSKEL--SKERYPQASI----VRSFKELTEDPEIDLIVVNTP 74 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHC-----TTEEEEEEECSSCCG--GGTTCTTSEE----ESCSHHHHTCTTCCEEEECSC
T ss_pred eEEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHH--HHHhCCCCce----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 78887764 156665444443332 33444 4443 5788999876 899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE
Q 012479 188 DAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL 208 (462)
+..+.++....+ +.|+-|
T Consensus 75 ~~~H~~~~~~al---~aGkhV 92 (362)
T 3fhl_A 75 DNTHYEYAGMAL---EAGKNV 92 (362)
T ss_dssp GGGHHHHHHHHH---HTTCEE
T ss_pred hHHHHHHHHHHH---HCCCeE
Confidence 999988776543 345543
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0016 Score=64.65 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=45.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHH----H---cCc--eecCCCcCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR----A---AGF--TEENGTLGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~----~---~G~--~~~d~~~~~~~eav~~AD 180 (462)
|||+|||.|++|.++|..|... |+ ++.+.++...+....+. . .+. ... ...+ .+++++||
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~------~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d-~~a~~~aD 71 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIV--GGAD-YSLLKGSE 71 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEE--EESC-GGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEE--EeCC-HHHhCCCC
Confidence 6899999999999999999988 76 77666654333211111 1 111 110 0235 78999999
Q ss_pred eEEEeec
Q 012479 181 LVLLLIS 187 (462)
Q Consensus 181 vViLavp 187 (462)
+||++..
T Consensus 72 iVViaag 78 (294)
T 1oju_A 72 IIVVTAG 78 (294)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999974
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0015 Score=67.69 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=65.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH---hhh-hccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~ea-v~~ADvViLavp 187 (462)
++|.|||+|.+|..+++.|++. |++|++.+ .+....+.+++.|+...-+...+. .++ +++||+||++++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~------g~~vvvId-~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS------GVKMVVLD-HDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEE-CCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 6799999999999999999999 98877655 445567777788874321112222 233 688999999999
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEEecc
Q 012479 188 DAAQADNYEKIFSCMKPN-SILGLSHG 213 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-aiL~~a~G 213 (462)
+......+-..+..+.|+ .+|.-+..
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara~~ 104 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARARD 104 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 876655444444445555 45555543
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00032 Score=71.76 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=61.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
.||+|||+| +|..++..+++.. .+++++ |..+..++..+.|++.|+.. ..|.++++++.|+|+++||+..
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~~----~~~elvav~~~~~~~a~~~a~~~gv~~----~~~~~~l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQPP----EGLELVGLLAQGSARSRELAHAFGIPL----YTSPEQITGMPDIACIVVRSTV 78 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSCC----TTEEEEEEECCSSHHHHHHHHHTTCCE----ESSGGGCCSCCSEEEECCC--C
T ss_pred CEEEEEehH-HHHHHHHHHHhCC----CCeEEEEEECCCHHHHHHHHHHhCCCE----ECCHHHHhcCCCEEEEECCCcc
Confidence 589999999 7998888887641 145654 34555667788899999875 6789999999999999999887
Q ss_pred H----HHHHHHHHhcCCCCcEEE
Q 012479 191 Q----ADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 191 ~----~~vl~eI~~~Lk~gaiL~ 209 (462)
+ .++... .|+.|+-|.
T Consensus 79 h~~~~~~~a~~---al~aGkhVl 98 (372)
T 4gmf_A 79 AGGAGTQLARH---FLARGVHVI 98 (372)
T ss_dssp TTSHHHHHHHH---HHHTTCEEE
T ss_pred cchhHHHHHHH---HHHcCCcEE
Confidence 7 344433 345566443
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0018 Score=65.08 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=47.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHH----HH---c--CceecCCCcCCHhh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA----RA---A--GFTEENGTLGDIYE 174 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A----~~---~--G~~~~d~~~~~~~e 174 (462)
|..++. +||+|||.|.+|.++|..|... |+ ++++.+....+....+ .. . ..... ...+. +
T Consensus 2 ~~~m~~-~kI~viGaG~vG~~~a~~l~~~------~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~--~t~d~-~ 71 (324)
T 3gvi_A 2 PGSMAR-NKIALIGSGMIGGTLAHLAGLK------ELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT--GANDY-A 71 (324)
T ss_dssp ----CC-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE--EESSG-G
T ss_pred CCCCcC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEE--EeCCH-H
Confidence 445666 8999999999999999999988 77 7776666544322111 11 1 11110 02344 8
Q ss_pred hhccCCeEEEeec
Q 012479 175 TISGSDLVLLLIS 187 (462)
Q Consensus 175 av~~ADvViLavp 187 (462)
++++||+||++..
T Consensus 72 a~~~aDiVIiaag 84 (324)
T 3gvi_A 72 AIEGADVVIVTAG 84 (324)
T ss_dssp GGTTCSEEEECCS
T ss_pred HHCCCCEEEEccC
Confidence 9999999999974
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00063 Score=67.56 Aligned_cols=85 Identities=9% Similarity=0.023 Sum_probs=57.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc--hh---HHHHHHcCceecCCCcCCHhhhhcc--CCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RS---FAEARAAGFTEENGTLGDIYETISG--SDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~--~s---~~~A~~~G~~~~d~~~~~~~eav~~--ADvViL 184 (462)
.||||||+|.+|..++..| .. +++++...+.+. +. .+.+.+.|+.. ....|.+|++++ .|+|++
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~------~~~lvav~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~vD~V~I 73 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DE------ECSITGIAPGVPEEDLSKLEKAISEMNIKP--KKYNNWWEMLEKEKPDILVI 73 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CT------TEEEEEEECSSTTCCCHHHHHHHHTTTCCC--EECSSHHHHHHHHCCSEEEE
T ss_pred eEEEEEccchhHHHHHHhc-CC------CcEEEEEecCCchhhHHHHHHHHHHcCCCC--cccCCHHHHhcCCCCCEEEE
Confidence 6899999999999888877 44 677654444332 22 22233346521 126789998864 899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEE
Q 012479 185 LISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
++|+..+.++....+ +.|+-|
T Consensus 74 ~tp~~~H~~~~~~al---~aGkhV 94 (337)
T 3ip3_A 74 NTVFSLNGKILLEAL---ERKIHA 94 (337)
T ss_dssp CSSHHHHHHHHHHHH---HTTCEE
T ss_pred eCCcchHHHHHHHHH---HCCCcE
Confidence 999999988776543 345543
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0014 Score=65.32 Aligned_cols=89 Identities=12% Similarity=0.193 Sum_probs=54.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH--cCc------eecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGF------TEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G~------~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|++|.+++..|... ++ ++++.+....+....+.+ .+. .. ..+..+++++||+
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~------~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i----~~~~~~a~~~aDv 77 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSL----YAGDYSDVKDCDV 77 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEE----C--CGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEE----EECCHHHhCCCCE
Confidence 7899999999999999999987 66 666555443222222222 221 11 1133678999999
Q ss_pred EEEeecchh----------------HHHHHHHHHhcCCCCcEEEEe
Q 012479 182 VLLLISDAA----------------QADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 182 ViLavpd~a----------------~~~vl~eI~~~Lk~gaiL~~a 211 (462)
||++++... ..++.+.|.++ .|+.+|...
T Consensus 78 Vii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~ 122 (318)
T 1y6j_A 78 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVV 122 (318)
T ss_dssp EEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEEC
T ss_pred EEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 999987433 23344455555 577766554
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00033 Score=66.71 Aligned_cols=147 Identities=15% Similarity=0.204 Sum_probs=85.6
Q ss_pred cccccchhhhhhhhccccccceeecCcccccccccc----c--CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEE
Q 012479 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDA----F--NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (462)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~----l--~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Viv 145 (462)
..+++...||-+-.|+.- -.|+-++.-..+.+. | ...++++|||+|++|.+++..+... ..|++++.
T Consensus 42 ~gv~~~qiRkDls~fg~~---G~~g~GY~V~~L~~~i~~~Lg~~~~~~V~IvGaG~lG~aLa~~~~~~----~~g~~iVg 114 (212)
T 3keo_A 42 LGIDSATVRRDFSYFGEL---GRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHD----RNKMQISM 114 (212)
T ss_dssp HTSCHHHHHHHHHTTGGG---TTTSSSEEHHHHHHHHHHHTTTTSCEEEEEECCSHHHHHHTTCCCCT----TSSEEEEE
T ss_pred HCCCHHHHHHHHHHHhhc---CCCCCCEEHHHHHHHHHHHhCCCCCCEEEEECcCHHHHHHHHhhhcc----cCCeEEEE
Confidence 455666666666555432 233334433333222 2 1226899999999999999874311 11777776
Q ss_pred EecCCch-hHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhc
Q 012479 146 GLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSM 222 (462)
Q Consensus 146 g~r~~~~-s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~ 222 (462)
..|.++. ....+.-.|+.+.+ ..++++.++ +.|+++||+|.....++.+.+...-- ..++-|++-
T Consensus 115 ~~D~dp~~kiG~~~i~GvpV~~--~~dL~~~v~~~~Id~vIIAvPs~~aq~v~d~lv~~GI-k~I~nFap~--------- 182 (212)
T 3keo_A 115 AFDLDSNDLVGKTTEDGIPVYG--ISTINDHLIDSDIETAILTVPSTEAQEVADILVKAGI-KGILSFSPV--------- 182 (212)
T ss_dssp EEECTTSTTTTCBCTTCCBEEE--GGGHHHHC-CCSCCEEEECSCGGGHHHHHHHHHHHTC-CEEEECSSS---------
T ss_pred EEeCCchhccCceeECCeEEeC--HHHHHHHHHHcCCCEEEEecCchhHHHHHHHHHHcCC-CEEEEcCCc---------
Confidence 6666554 33221124664311 356777776 48999999999888888887654321 236666652
Q ss_pred cccCCCCccEEeccc
Q 012479 223 GLDFPKNIGVIAVCP 237 (462)
Q Consensus 223 ~i~~p~~v~VV~v~P 237 (462)
.+..|+++.|--+..
T Consensus 183 ~l~vp~~v~v~~vdl 197 (212)
T 3keo_A 183 HLTLPKDIIVQYVDL 197 (212)
T ss_dssp CCCCCTTSEEEECCH
T ss_pred ccCCCCCcEEEEeCc
Confidence 235577776655543
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0004 Score=68.11 Aligned_cols=82 Identities=10% Similarity=0.150 Sum_probs=55.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd~ 189 (462)
.||||||+|.||..++.+|.... ...+++++...+.+. .+.+.|+. ..+.+|+++ +.|+|++++|+.
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~--~~~~~~lvav~d~~~----~a~~~g~~-----~~~~~ell~~~~vD~V~i~tp~~ 76 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPR--SAAFLNLIGFVSRRE----LGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHH--HHTTEEEEEEECSSC----CCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred ceEEEEEEcHHHHHHHHHHhccc--cCCCEEEEEEECchH----HHHHcCCC-----CCCHHHHhcCCCCCEEEEeCCcH
Confidence 68999999999999999987520 001455443333221 12334554 468889886 689999999999
Q ss_pred hHHHHHHHHHhcCCCCcE
Q 012479 190 AQADNYEKIFSCMKPNSI 207 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gai 207 (462)
.+.++..... +.|+-
T Consensus 77 ~H~~~~~~al---~aGkh 91 (294)
T 1lc0_A 77 SHEDYIRQFL---QAGKH 91 (294)
T ss_dssp GHHHHHHHHH---HTTCE
T ss_pred hHHHHHHHHH---HCCCc
Confidence 9988776543 44663
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0027 Score=63.70 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=46.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH--cC-------ceecCCCcCCHhhhhc
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AG-------FTEENGTLGDIYETIS 177 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~--~G-------~~~~d~~~~~~~eav~ 177 (462)
++. +||+|||.|.+|.++|..|... |+ ++++.+....+....+.+ +. ... ...+..++++
T Consensus 3 m~~-~kI~iiGaG~vG~~~a~~l~~~------~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v---~~t~d~~a~~ 72 (321)
T 3p7m_A 3 MAR-KKITLVGAGNIGGTLAHLALIK------QLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKV---RGTNDYKDLE 72 (321)
T ss_dssp CCC-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE---EEESCGGGGT
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEE---EEcCCHHHHC
Confidence 344 8999999999999999999988 66 776665554332222211 11 111 0123357999
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
+||+||++..
T Consensus 73 ~aDvVIi~ag 82 (321)
T 3p7m_A 73 NSDVVIVTAG 82 (321)
T ss_dssp TCSEEEECCS
T ss_pred CCCEEEEcCC
Confidence 9999999964
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00084 Score=66.19 Aligned_cols=77 Identities=19% Similarity=0.089 Sum_probs=56.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcC-----ceecCCCcCCHhhhhccCC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~d~~~~~~~eav~~AD 180 (462)
.++| +++.|+|.|-+|.+++..|.+. |. +|++.+|..++..+.+++.+ +........+..++++++|
T Consensus 124 ~l~~-k~vlVlGaGG~g~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~D 196 (283)
T 3jyo_A 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_dssp TCCC-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSS
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCC
Confidence 5788 9999999999999999999998 88 68888887655555544432 1100000236778889999
Q ss_pred eEEEeecchh
Q 012479 181 LVLLLISDAA 190 (462)
Q Consensus 181 vViLavpd~a 190 (462)
+||.+||...
T Consensus 197 iVInaTp~Gm 206 (283)
T 3jyo_A 197 GVVNATPMGM 206 (283)
T ss_dssp EEEECSSTTS
T ss_pred EEEECCCCCC
Confidence 9999999643
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0011 Score=66.71 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=57.9
Q ss_pred cccCCC-CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee-cCCCcCC---HhhhhccCC
Q 012479 106 DAFNGI-NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGD---IYETISGSD 180 (462)
Q Consensus 106 ~~l~gi-kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~-~d~~~~~---~~eav~~AD 180 (462)
+-++|- |||.|||+|.+|..++..|.+. .+|.++.+.. +..+.+.+..-.. .| +.+ ..++++++|
T Consensus 10 ~~~~g~~mkilvlGaG~vG~~~~~~L~~~-------~~v~~~~~~~-~~~~~~~~~~~~~~~d--~~d~~~l~~~~~~~D 79 (365)
T 3abi_A 10 HHIEGRHMKVLILGAGNIGRAIAWDLKDE-------FDVYIGDVNN-ENLEKVKEFATPLKVD--ASNFDKLVEVMKEFE 79 (365)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHTTT-------SEEEEEESCH-HHHHHHTTTSEEEECC--TTCHHHHHHHHTTCS
T ss_pred ccccCCccEEEEECCCHHHHHHHHHHhcC-------CCeEEEEcCH-HHHHHHhccCCcEEEe--cCCHHHHHHHHhCCC
Confidence 344442 5899999999999999998654 5777776653 3344443322111 01 223 456789999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||.++|+..+..+.+... +.|.-+++.+
T Consensus 80 vVi~~~p~~~~~~v~~~~~---~~g~~yvD~s 108 (365)
T 3abi_A 80 LVIGALPGFLGFKSIKAAI---KSKVDMVDVS 108 (365)
T ss_dssp EEEECCCGGGHHHHHHHHH---HHTCEEEECC
T ss_pred EEEEecCCcccchHHHHHH---hcCcceEeee
Confidence 9999999998877776432 2344444444
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0022 Score=64.58 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=44.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHH--HHcCceec--C-CCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEA--RAAGFTEE--N-GTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A--~~~G~~~~--d-~~~~~~~eav~~ADvViL 184 (462)
+||+|||.|.+|.++|..|... |+ ++++.+....+....+ ...++... + ....+..+++++||+||+
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~------~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi 79 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQ------GITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCI 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEE
Confidence 7999999999999999999988 76 6665554322222222 11221100 0 001233578999999999
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+..
T Consensus 80 ~ag 82 (326)
T 3pqe_A 80 CAG 82 (326)
T ss_dssp CCS
T ss_pred ecc
Confidence 974
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0015 Score=66.71 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=50.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-cCCeEEE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-~ADvViL 184 (462)
.|+| |+|+|+|+|++|...|+.|+.. |.+|++.+.. ....+.+.+.|... .+.+++.. +||+++.
T Consensus 172 ~L~G-ktV~I~G~GnVG~~~A~~l~~~------GakVvvsD~~-~~~~~~a~~~ga~~-----v~~~ell~~~~DIliP 237 (355)
T 1c1d_A 172 SLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVADTD-TERVAHAVALGHTA-----VALEDVLSTPCDVFAP 237 (355)
T ss_dssp CSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE-----CCGGGGGGCCCSEEEE
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCC-ccHHHHHHhcCCEE-----eChHHhhcCccceecH
Confidence 6899 9999999999999999999988 9988855443 33245566667652 35667766 8999874
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00032 Score=70.74 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=65.8
Q ss_pred ccCCCCEEEEEcccch-HHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCC----c--CCHhhhhccC
Q 012479 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----L--GDIYETISGS 179 (462)
Q Consensus 107 ~l~gikkIgIIG~G~m-G~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~----~--~~~~eav~~A 179 (462)
.++| +++.|||.|.| |..+|+.|... |..|.+.+|+..+.++.+.+.+......+ + .+.++.+++|
T Consensus 174 ~l~g-k~vvVIG~G~iVG~~~A~~L~~~------gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 174 RLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHC------CCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccC
Confidence 6889 99999999976 99999999988 88888887764444444333332110000 1 3578899999
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|+||.+++-... ++. ...+|+|++|+|++-
T Consensus 247 DIVIsAtg~p~~--vI~--~e~vk~GavVIDVgi 276 (320)
T 1edz_A 247 DVVITGVPSENY--KFP--TEYIKEGAVCINFAC 276 (320)
T ss_dssp SEEEECCCCTTC--CBC--TTTSCTTEEEEECSS
T ss_pred CEEEECCCCCcc--eeC--HHHcCCCeEEEEcCC
Confidence 999999985211 011 234688988888864
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0024 Score=63.88 Aligned_cols=68 Identities=21% Similarity=0.168 Sum_probs=46.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH-------c--CceecCCCcCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------A--GFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~-------~--G~~~~d~~~~~~~eav~~AD 180 (462)
|||+|||.|.||.++|..|... |+ ++++.+....+....+.+ . .... ...+..+++++||
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v---~~~~~~~a~~~aD 71 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ------DVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRV---TGTNDYGPTEDSD 71 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEE---EEESSSGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEE---EECCCHHHhCCCC
Confidence 6899999999999999999988 76 666665544332222211 1 1111 0124568899999
Q ss_pred eEEEeecc
Q 012479 181 LVLLLISD 188 (462)
Q Consensus 181 vViLavpd 188 (462)
+||++.+.
T Consensus 72 vVii~ag~ 79 (314)
T 3nep_X 72 VCIITAGL 79 (314)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999753
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0036 Score=62.38 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=43.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCch-hHHHHHH--cCceec--C-CCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR-SFAEARA--AGFTEE--N-GTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~-s~~~A~~--~G~~~~--d-~~~~~~~eav~~ADvVi 183 (462)
+||+|||.|++|.+++..|... ++ +++. .+.+.. ....+.. .+.... + ....+..+++++||+||
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~------~~~~ei~L-~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVv 79 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQ------SIVDELVI-IDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVV 79 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCSEEEE-ECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEE-EeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEE
Confidence 6999999999999999999887 65 5544 443332 2211221 111000 0 00124577899999999
Q ss_pred Eeecc
Q 012479 184 LLISD 188 (462)
Q Consensus 184 Lavpd 188 (462)
++++.
T Consensus 80 i~ag~ 84 (317)
T 3d0o_A 80 ICAGA 84 (317)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99853
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00088 Score=67.78 Aligned_cols=98 Identities=10% Similarity=0.036 Sum_probs=66.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee---cCCCcCCHhhhhccCCeEE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~---~d~~~~~~~eav~~ADvVi 183 (462)
.+++ ++|.|||.|.+|.+.++.++.. |.+|++.+++.. ..+.+.+.|... .+....+..+.++++|+||
T Consensus 164 ~l~~-~~VlViGaGgvG~~aa~~a~~~------Ga~V~v~dr~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI 235 (361)
T 1pjc_A 164 GVKP-GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINVE-RLSYLETLFGSRVELLYSNSAEIETAVAEADLLI 235 (361)
T ss_dssp TBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCHH-HHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEE
Confidence 4778 9999999999999999999988 888877776543 344454443210 0000123456778999999
Q ss_pred EeecchhH--HH-HHHHHHhcCCCCcEEEEec
Q 012479 184 LLISDAAQ--AD-NYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 184 Lavpd~a~--~~-vl~eI~~~Lk~gaiL~~a~ 212 (462)
.+++.... .. +.++..+.|++|.+|++.+
T Consensus 236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 99975331 11 1344567789999888765
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0014 Score=68.81 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=49.5
Q ss_pred CCCCEEEEEcccch--HHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc---------CceecCCCcCCHhhhhc
Q 012479 109 NGINQIGVIGWGSQ--GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETIS 177 (462)
Q Consensus 109 ~gikkIgIIG~G~m--G~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~---------G~~~~d~~~~~~~eav~ 177 (462)
+. +||+|||.|+| |.+++..|...- .-.| +|++.+.. +...+..... -+.. +.|.+++++
T Consensus 4 ~~-~KIaVIGaGs~g~g~~la~~l~~~~--~~~g-eV~L~Di~-~e~le~~~~~~~~l~~~~~~I~~----TtD~~eAl~ 74 (450)
T 3fef_A 4 DQ-IKIAYIGGGSQGWARSLMSDLSIDE--RMSG-TVALYDLD-FEAAQKNEVIGNHSGNGRWRYEA----VSTLKKALS 74 (450)
T ss_dssp CC-EEEEEETTTCSSHHHHHHHHHHHCS--SCCE-EEEEECSS-HHHHHHHHHHHTTSTTSCEEEEE----ESSHHHHHT
T ss_pred CC-CEEEEECCChhHhHHHHHHHHHhcc--ccCC-eEEEEeCC-HHHHHHHHHHHHHHhccCCeEEE----ECCHHHHhc
Confidence 44 79999999998 578888887630 0015 67665544 3323222211 1222 568899999
Q ss_pred cCCeEEEeecchhHHH
Q 012479 178 GSDLVLLLISDAAQAD 193 (462)
Q Consensus 178 ~ADvViLavpd~a~~~ 193 (462)
+||+||+++++.....
T Consensus 75 dADfVI~airvG~~~~ 90 (450)
T 3fef_A 75 AADIVIISILPGSLDD 90 (450)
T ss_dssp TCSEEEECCCSSCHHH
T ss_pred CCCEEEeccccCCccc
Confidence 9999999999765543
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0028 Score=62.95 Aligned_cols=89 Identities=25% Similarity=0.222 Sum_probs=54.9
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc---------CceecCCCcCCHhhhhccCCeE
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~---------G~~~~d~~~~~~~eav~~ADvV 182 (462)
||+|||.|++|.+++..|... ++ ++++.+....+....+.+. ..... .+.+. +++++||+|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~------~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d~-~a~~~aD~V 71 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR------GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRIS--GSNSY-EDMRGSDIV 71 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH------TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSEE
T ss_pred CEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEE--ECCCH-HHhCCCCEE
Confidence 699999999999999999887 66 4666555433222212211 21110 02454 789999999
Q ss_pred EEeecchh----------------HHHHHHHHHhcCCCCcEEEEe
Q 012479 183 LLLISDAA----------------QADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 183 iLavpd~a----------------~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|++.+... ..++.++|..+ .|+.++.+.
T Consensus 72 i~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~ 115 (308)
T 2d4a_B 72 LVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVVIT 115 (308)
T ss_dssp EECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEC
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 99966433 33455555555 366655443
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0018 Score=64.47 Aligned_cols=80 Identities=10% Similarity=0.122 Sum_probs=58.1
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc---CCeEEEeec
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~---ADvViLavp 187 (462)
.||||||+|.||. .++..|+.. .+++++...+.+.+ +.|+.. ..+.++++++ .|+|++++|
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~-----~~~~lvav~d~~~~------~~g~~~----~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKN-----ANFKLVATASRHGT------VEGVNS----YTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHC-----TTEEEEEEECSSCC------CTTSEE----ESSHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEEeCChh------hcCCCc----cCCHHHHHhCCCCCCEEEEeCC
Confidence 5899999999998 799999875 15665544444332 246664 6789998865 899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE
Q 012479 188 DAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
+..+.++....+ +.|+-|.
T Consensus 91 ~~~H~~~~~~al---~aGkhVl 109 (330)
T 4ew6_A 91 PQYRYEAAYKAL---VAGKHVF 109 (330)
T ss_dssp HHHHHHHHHHHH---HTTCEEE
T ss_pred cHHHHHHHHHHH---HcCCcEE
Confidence 999988776543 3455443
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0029 Score=63.98 Aligned_cols=93 Identities=22% Similarity=0.181 Sum_probs=55.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH--cC--ceecC--CCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEEN--GTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~d--~~~~~~~eav~~ADvVi 183 (462)
+||+|||.|.||.++|..|... |+ ++++.+....+....+.+ ++ +.... ....+.++ +++||+||
T Consensus 22 ~kV~ViGaG~vG~~~a~~la~~------g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVI 94 (330)
T 3ldh_A 22 NKITVVGCDAVGMADAISVLMK------DLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVV 94 (330)
T ss_dssp CEEEEESTTHHHHHHHHHHHHH------CCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEE
Confidence 8999999999999999999988 76 665555432222222211 11 10000 01235554 89999999
Q ss_pred Eeecch----------------hHHHHHHHHHhcCCCCcEEEEec
Q 012479 184 LLISDA----------------AQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 184 Lavpd~----------------a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.... ...++.++|..+ .|+.++...+
T Consensus 95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvt 138 (330)
T 3ldh_A 95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHP 138 (330)
T ss_dssp ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCC
Confidence 985321 122344456666 6777655443
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0006 Score=67.41 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=51.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++| +++.|||.|-+|.+++..|.+. |. +|.+..|+.++..+.+.+.+... ..+..+ + ++|+||.+
T Consensus 119 ~~~~-k~vlvlGaGGaaraia~~L~~~------G~~~v~v~nRt~~ka~~La~~~~~~~----~~~l~~-l-~~DivIna 185 (282)
T 3fbt_A 119 EIKN-NICVVLGSGGAARAVLQYLKDN------FAKDIYVVTRNPEKTSEIYGEFKVIS----YDELSN-L-KGDVIINC 185 (282)
T ss_dssp CCTT-SEEEEECSSTTHHHHHHHHHHT------TCSEEEEEESCHHHHHHHCTTSEEEE----HHHHTT-C-CCSEEEEC
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHhcCccc----HHHHHh-c-cCCEEEEC
Confidence 3678 9999999999999999999998 88 88888887555444443322221 223334 4 89999999
Q ss_pred ecch
Q 012479 186 ISDA 189 (462)
Q Consensus 186 vpd~ 189 (462)
||..
T Consensus 186 Tp~G 189 (282)
T 3fbt_A 186 TPKG 189 (282)
T ss_dssp SSTT
T ss_pred CccC
Confidence 9864
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0032 Score=62.88 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=45.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH--cC------ceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|++|.+++..|... ++ ++++.+....+....+.+ +. +.. ..+..+++++||+
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v----~~~~~~a~~~aDv 75 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI----YSGEYSDCKDADL 75 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEE----EECCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCCE
Confidence 6999999999999999999887 65 565555432222222222 11 111 1245678999999
Q ss_pred EEEeecch
Q 012479 182 VLLLISDA 189 (462)
Q Consensus 182 ViLavpd~ 189 (462)
||++.+..
T Consensus 76 Vii~ag~~ 83 (318)
T 1ez4_A 76 VVITAGAP 83 (318)
T ss_dssp EEECCCC-
T ss_pred EEECCCCC
Confidence 99998643
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0017 Score=64.16 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=59.4
Q ss_pred cCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++| +++.|||.|. +|..+|+.|... |..|.+..++ +.++++.+++||+||.++
T Consensus 148 l~G-k~vvVvG~s~iVG~plA~lL~~~------gAtVtv~~~~-------------------t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 148 YHE-NTVTIVNRSPVVGRPLSMMLLNR------NYTVSVCHSK-------------------TKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp CCS-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHHSSEEEECS
T ss_pred cCC-CEEEEEcCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------cccHHHhhccCCEEEECC
Confidence 899 9999999985 899999999988 8888876532 247889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+-.. ++. ..++|+|++|+|++
T Consensus 202 g~p~---~I~--~~~vk~GavVIDvg 222 (276)
T 3ngx_A 202 GRPG---FLN--REMVTPGSVVIDVG 222 (276)
T ss_dssp SCTT---CBC--GGGCCTTCEEEECC
T ss_pred CCCc---ccc--HhhccCCcEEEEec
Confidence 8522 222 24579999998875
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0037 Score=62.69 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=45.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH--cCc------eecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGF------TEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G~------~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|++|.+++..|... ++ ++++.+....+....+.+ +.. .. ..+..+++++||+
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~------~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i----~~~~~~a~~~aDv 79 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI----YSAEYSDAKDADL 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEE----EECCGGGGGGCSE
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCCE
Confidence 7999999999999999999877 64 565554432222222222 221 11 1245678999999
Q ss_pred EEEeecch
Q 012479 182 VLLLISDA 189 (462)
Q Consensus 182 ViLavpd~ 189 (462)
||++.+..
T Consensus 80 Vii~ag~~ 87 (326)
T 2zqz_A 80 VVITAGAP 87 (326)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998643
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0017 Score=63.59 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=53.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
.+ +++.|||.|-+|.+++..|.+. |. +|.|.+|+.++..+.+.+.+... ..+.. +.++|+||.+||
T Consensus 118 ~~-~~vlvlGaGgaarav~~~L~~~------G~~~i~v~nRt~~ka~~la~~~~~~~----~~~~~--~~~~DivInaTp 184 (271)
T 1npy_A 118 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSLE--NQQADILVNVTS 184 (271)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCCT--TCCCSEEEECSS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcc----chhhh--cccCCEEEECCC
Confidence 46 8999999999999999999998 87 78889888666667777666532 11222 468999999999
Q ss_pred chh
Q 012479 188 DAA 190 (462)
Q Consensus 188 d~a 190 (462)
...
T Consensus 185 ~gm 187 (271)
T 1npy_A 185 IGM 187 (271)
T ss_dssp TTC
T ss_pred CCc
Confidence 764
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0017 Score=64.47 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.|. .|..+|+.|... |..|.+..+. +.++++.+++||+||.
T Consensus 157 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 210 (285)
T 3l07_A 157 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 210 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHhcccCCEEEE
Confidence 46899 9999999987 699999999988 8888776432 2467889999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-.. ++. ...+|+|++|+|++
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (285)
T 3l07_A 211 AVGKPN---FIT--ADMVKEGAVVIDVG 233 (285)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCcEEEEec
Confidence 998422 122 24579999998876
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0018 Score=63.70 Aligned_cols=155 Identities=14% Similarity=0.145 Sum_probs=90.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH---HHHHH----cCceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARA----AGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~---~~A~~----~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
+||+|+| +|.||..+++.+.+. .+++++...+.+.... +..+- .|+.. ..+++++++++|+||
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~-----~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v----~~dl~~ll~~~DVVI 78 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAA-----PDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL----TDDIERVCAEADYLI 78 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHC-----TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC----BCCHHHHHHHCSEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEEecCcccccccHHHHhCCCCCcee----cCCHHHHhcCCCEEE
Confidence 7999999 999999999998865 1566655555432110 00011 13332 468889999999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCc-EEEEeccchHHHhhhccccCCCCccEEecccCCCchh---------hHHhhhcCcc
Q 012479 184 LLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS---------VRRLYVQGKE 253 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~---------vr~lf~~G~~ 253 (462)
-+++|....+.+..... .|. +|+=+.|++-..++. .....+.+.+ ...||..--+ ..+.|.++
T Consensus 79 DfT~p~a~~~~~~~al~---~G~~vVigTTG~s~~~~~~-L~~aa~~~~v-v~a~N~s~Gv~l~~~~~~~aa~~l~~~-- 151 (272)
T 4f3y_A 79 DFTLPEGTLVHLDAALR---HDVKLVIGTTGFSEPQKAQ-LRAAGEKIAL-VFSANMSVGVNVTMKLLEFAAKQFAQG-- 151 (272)
T ss_dssp ECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHHHH-HHHHTTTSEE-EECSCCCHHHHHHHHHHHHHHHHTSSS--
T ss_pred EcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhccCCE-EEECCCCHHHHHHHHHHHHHHHhcCcC--
Confidence 99999988877776543 344 444456775432211 1112234554 6778754332 11112111
Q ss_pred ccCCCceEEEeecc----C-CCHHHHHHHHHHHHHhCC
Q 012479 254 INGAGINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (462)
Q Consensus 254 ~~G~Gv~aliav~q----d-~tgea~e~a~al~~aiG~ 286 (462)
.-+- ++-.|+ | +||.++.+++.+.+..|.
T Consensus 152 ---~die-i~E~HH~~K~DaPSGTA~~la~~i~~~~~~ 185 (272)
T 4f3y_A 152 ---YDIE-IIEAHHRHKVDAPSGTALMMGETIAAATGR 185 (272)
T ss_dssp ---CEEE-EEEEECTTCCSSSCHHHHHHHHHHHHTTTC
T ss_pred ---CCEE-EEEecCCCCCCCCCHHHHHHHHHHHHHhCc
Confidence 1122 233343 2 478888888888877764
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0056 Score=61.79 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=60.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCceecCC-------------CcCCHhhhhc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENG-------------TLGDIYETIS 177 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~d~-------------~~~~~~eav~ 177 (462)
.||||||+|.||..+++.|.+. .+++++...+. .......+...|+....+ ...+.+++.+
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~-----p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~ 76 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK 76 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH
T ss_pred eEEEEEecCHHHHHHHHHHHcC-----CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc
Confidence 5899999999999999999865 14565444433 233445566656532100 0113345556
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
++|+|+.|+|.....+..+... +.|..+++.++
T Consensus 77 ~vDvV~~aTp~~~s~~~a~~~~---~aG~kvV~~sa 109 (340)
T 1b7g_O 77 TSDIVVDTTPNGVGAQYKPIYL---QLQRNAIFQGG 109 (340)
T ss_dssp HCSEEEECCSTTHHHHHHHHHH---HTTCEEEECTT
T ss_pred CCCEEEECCCCchhHHHHHHHH---HcCCeEEEeCC
Confidence 8999999999998887776543 35665555544
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0017 Score=64.54 Aligned_cols=76 Identities=18% Similarity=0.132 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.|. .|..+|+.|... |..|.+..+. +.++++.+++||+||.
T Consensus 156 i~l~G-k~vvVvGrs~iVG~p~A~lL~~~------gAtVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (285)
T 3p2o_A 156 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 209 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhhcCCEEEE
Confidence 56899 9999999987 699999999988 8888776532 2467889999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-.. ++. ...+|+|++|+|++
T Consensus 210 Avg~p~---~I~--~~~vk~GavVIDVg 232 (285)
T 3p2o_A 210 AAGCVN---LLR--SDMVKEGVIVVDVG 232 (285)
T ss_dssp CSSCTT---CBC--GGGSCTTEEEEECC
T ss_pred CCCCCC---cCC--HHHcCCCeEEEEec
Confidence 998422 222 24579999998886
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0035 Score=62.76 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC-c-hhHHHHHH----c-----CceecCCCcCCHhhhhccC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-S-RSFAEARA----A-----GFTEENGTLGDIYETISGS 179 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~-~-~s~~~A~~----~-----G~~~~d~~~~~~~eav~~A 179 (462)
+||+|||.|.||.++|..|... |+ +|++.++.. . +....+.+ . .... ...+..+++++|
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~------g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i---~~t~d~~a~~~a 79 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK------ELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANI---IGTSDYADTADS 79 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCE---EEESCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEE---EEcCCHHHhCCC
Confidence 7999999999999999999998 88 777665542 1 11111111 0 1111 012335789999
Q ss_pred CeEEEee
Q 012479 180 DLVLLLI 186 (462)
Q Consensus 180 DvViLav 186 (462)
|+||++.
T Consensus 80 DvVIiaa 86 (315)
T 3tl2_A 80 DVVVITA 86 (315)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 9999997
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0019 Score=64.58 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=59.3
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh--hhhccCCeE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLV 182 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~--eav~~ADvV 182 (462)
..++| +++.|||.|. +|..+|+.|... |..|.+..+.. .+++ +.+++||+|
T Consensus 161 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~~~~T-------------------~~l~l~~~~~~ADIV 214 (300)
T 4a26_A 161 IEMAG-KRAVVLGRSNIVGAPVAALLMKE------NATVTIVHSGT-------------------STEDMIDYLRTADIV 214 (300)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTS-------------------CHHHHHHHHHTCSEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCC-------------------CCchhhhhhccCCEE
Confidence 56899 9999999987 799999999998 88888876521 2344 789999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|.+++-.. ++. ...+|+|++|+|++
T Consensus 215 I~Avg~p~---~I~--~~~vk~GavVIDvg 239 (300)
T 4a26_A 215 IAAMGQPG---YVK--GEWIKEGAAVVDVG 239 (300)
T ss_dssp EECSCCTT---CBC--GGGSCTTCEEEECC
T ss_pred EECCCCCC---CCc--HHhcCCCcEEEEEe
Confidence 99999532 222 24579999998875
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0059 Score=61.53 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=60.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceec------------CC-C-cCCHhhh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEE------------NG-T-LGDIYET 175 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~------------d~-~-~~~~~ea 175 (462)
|.||||+|+|.+|.-+++.|.+. .+++++...+.. ..+...+...|+..- .+ . ..+.++.
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~ 75 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEeECHHHHHHHHHHHcC-----CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHH
Confidence 36899999999999999999864 155654433332 233334444432100 00 0 1245566
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 176 v~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
..++|+|+.|+|.....+..+... +.|+.|++.++-
T Consensus 76 ~~~vDvV~~atp~~~~~~~a~~~l---~aG~~VId~sp~ 111 (337)
T 1cf2_P 76 LDEADIVIDCTPEGIGAKNLKMYK---EKGIKAIFQGGE 111 (337)
T ss_dssp HHTCSEEEECCSTTHHHHHHHHHH---HHTCCEEECTTS
T ss_pred hcCCCEEEECCCchhhHHHHHHHH---HcCCEEEEecCC
Confidence 779999999999998887776543 345556666654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0035 Score=62.32 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=44.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH--cC------ceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|++|.+++..|... ++ ++++.+....+....+.+ +. ... ..+..+++++||+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v----~~~~~~a~~~aD~ 70 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL------GVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWV----WAGSYGDLEGARA 70 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEE----EECCGGGGTTEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEE----EECCHHHhCCCCE
Confidence 6899999999999999999887 53 565554432222222332 11 111 1134678999999
Q ss_pred EEEeecc
Q 012479 182 VLLLISD 188 (462)
Q Consensus 182 ViLavpd 188 (462)
||++.+.
T Consensus 71 Vii~ag~ 77 (310)
T 2xxj_A 71 VVLAAGV 77 (310)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998863
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0039 Score=65.62 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC---CHhhhhccCCeE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLV 182 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~eav~~ADvV 182 (462)
..+++ ++|.|||.|.+|.+++..|.+. .|.+|++..|..++..+.+...++......+. +..++++++|+|
T Consensus 19 ~~l~~-k~VlIiGAGgiG~aia~~L~~~-----~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvV 92 (467)
T 2axq_A 19 GRHMG-KNVLLLGSGFVAQPVIDTLAAN-----DDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVV 92 (467)
T ss_dssp ----C-EEEEEECCSTTHHHHHHHHHTS-----TTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEE
T ss_pred cCCCC-CEEEEECChHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEE
Confidence 45677 9999999999999999999875 04688888886554444443334321000022 344677899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|.++|+..+..+.... +++|..+.+.
T Consensus 93 In~tp~~~~~~v~~a~---l~~g~~vvd~ 118 (467)
T 2axq_A 93 ISLIPYTFHPNVVKSA---IRTKTDVVTS 118 (467)
T ss_dssp EECSCGGGHHHHHHHH---HHHTCEEEEC
T ss_pred EECCchhhhHHHHHHH---HhcCCEEEEe
Confidence 9999988665554432 2334444444
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0038 Score=65.19 Aligned_cols=80 Identities=20% Similarity=0.141 Sum_probs=52.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-ceecCCCcC---CHhhhhccCCeEEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLG---DIYETISGSDLVLL 184 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~---~~~eav~~ADvViL 184 (462)
++ ++|.|||.|.+|.+++..|.+. |.+|++..|..++..+.+...+ +......+. +..++++++|+||.
T Consensus 2 ~~-k~VlViGaG~iG~~ia~~L~~~------G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn 74 (450)
T 1ff9_A 2 AT-KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVIS 74 (450)
T ss_dssp CC-CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEE
Confidence 35 8999999999999999999988 8888887776433323332222 210000122 34467889999999
Q ss_pred eecchhHHHHH
Q 012479 185 LISDAAQADNY 195 (462)
Q Consensus 185 avpd~a~~~vl 195 (462)
++|...+..+.
T Consensus 75 ~a~~~~~~~i~ 85 (450)
T 1ff9_A 75 LIPYTFHATVI 85 (450)
T ss_dssp CCC--CHHHHH
T ss_pred CCccccchHHH
Confidence 99987665543
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0094 Score=59.15 Aligned_cols=154 Identities=14% Similarity=0.056 Sum_probs=92.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh---HHHHH-----HcCceecCCCcCCHhhhhccCCeE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s---~~~A~-----~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
.||+|+| +|.||..+++.+.+. .+++++...+..... .+..+ ..|+.. ..++++++.++|+|
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~-----~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v----~~dl~~ll~~aDVv 92 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRR-----KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI----TDDPESAFSNTEGI 92 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTC-----SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC----BSCHHHHTTSCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccchHHhhccCcCCcee----eCCHHHHhcCCCEE
Confidence 6899999 999999999998864 166766555543211 01111 134443 56889999999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCc-EEEEeccchHHHhhhccccCCCCccEEecccCCCchhh---------HHhhhcCc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV---------RRLYVQGK 252 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~v---------r~lf~~G~ 252 (462)
|-.++|....+.+..... .|. +|+=+.|++-...+. ....-+.+.+ ...||..--+. .+.|.
T Consensus 93 IDFT~p~a~~~~~~~~l~---~Gv~vViGTTG~~~e~~~~-L~~aa~~~~~-~~a~N~SiGv~ll~~l~~~aa~~l~--- 164 (288)
T 3ijp_A 93 LDFSQPQASVLYANYAAQ---KSLIHIIGTTGFSKTEEAQ-IADFAKYTTI-VKSGNMSLGVNLLANLVKRAAKALD--- 164 (288)
T ss_dssp EECSCHHHHHHHHHHHHH---HTCEEEECCCCCCHHHHHH-HHHHHTTSEE-EECSCCCHHHHHHHHHHHHHHHHSC---
T ss_pred EEcCCHHHHHHHHHHHHH---cCCCEEEECCCCCHHHHHH-HHHHhCcCCE-EEECCCcHHHHHHHHHHHHHHHhcC---
Confidence 999999887776665443 344 444456775322211 0111234554 67888543331 11121
Q ss_pred cccCCCceE-EEeecc----C-CCHHHHHHHHHHHHHhCC
Q 012479 253 EINGAGINS-SFAVHQ----D-VDGRATNVALGWSVALGS 286 (462)
Q Consensus 253 ~~~G~Gv~a-liav~q----d-~tgea~e~a~al~~aiG~ 286 (462)
.+... ++-.|. | +||.++.+++.+.++.|.
T Consensus 165 ----~~~dieIiE~HH~~K~DaPSGTA~~la~~i~~~~~~ 200 (288)
T 3ijp_A 165 ----DDFDIEIYEMHHANKVDSPSGTALLLGQAAAEGRNI 200 (288)
T ss_dssp ----TTSEEEEEEEECTTCCCSSCHHHHHHHHHHHHHTTS
T ss_pred ----CCCCEEEEEccCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 12222 233343 2 779999999999988875
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0054 Score=61.70 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHh---hhhhcCCcEEEEEecCCchh-----HH--HHHHc--CceecCCCcCCHhhhhc-
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRS-----FA--EARAA--GFTEENGTLGDIYETIS- 177 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds---~~~~g~G~~Vivg~r~~~~s-----~~--~A~~~--G~~~~d~~~~~~~eav~- 177 (462)
|.||+|||+|.+|..+++.|.+. +...|.+++++...+.+... .. .+... +... + ..+.+++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~-~--~~d~~~ll~~ 78 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLR-D--DAKAIEVVRS 78 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCS-B--CCCHHHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCcccc-C--CCCHHHHhcC
Confidence 57999999999999999999764 11222356654433332111 11 11111 2110 0 137888875
Q ss_pred -cCCeEEEeecchhH-HHHHHHHHhcCCCCcEEEEe
Q 012479 178 -GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 178 -~ADvViLavpd~a~-~~vl~eI~~~Lk~gaiL~~a 211 (462)
+.|+|+.++|+..+ .+.++-+...|+.|+.|+..
T Consensus 79 ~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~ 114 (327)
T 3do5_A 79 ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS 114 (327)
T ss_dssp SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence 58999999999876 22333345567788876544
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0043 Score=62.19 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=54.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecC---CchhHHHHHHc----CceecCCCcCC---Hhh
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGD---IYE 174 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~---~~~s~~~A~~~----G~~~~d~~~~~---~~e 174 (462)
..++| +++.|+|.|-+|.+++..|.+. |. +|++..|. .++..+.+.+. |....-....+ ..+
T Consensus 150 ~~l~g-k~~lVlGaGG~g~aia~~L~~~------Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~ 222 (315)
T 3tnl_A 150 HDIIG-KKMTICGAGGAATAICIQAALD------GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRK 222 (315)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCccC-CEEEEECCChHHHHHHHHHHHC------CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHh
Confidence 34788 9999999999999999999998 98 88888887 34444444332 21110000222 345
Q ss_pred hhccCCeEEEeecchh
Q 012479 175 TISGSDLVLLLISDAA 190 (462)
Q Consensus 175 av~~ADvViLavpd~a 190 (462)
.++++|+||.+||...
T Consensus 223 ~l~~aDiIINaTp~Gm 238 (315)
T 3tnl_A 223 EIAESVIFTNATGVGM 238 (315)
T ss_dssp HHHTCSEEEECSSTTS
T ss_pred hhcCCCEEEECccCCC
Confidence 6789999999999654
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0036 Score=62.71 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=54.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecC---CchhHHHHHHc----CceecCCCcCCH---hhh
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARAA----GFTEENGTLGDI---YET 175 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~---~~~s~~~A~~~----G~~~~d~~~~~~---~ea 175 (462)
.++| +++.|+|.|-+|.+++..|.+. |. +|.|..|. .++..+.+++. +....-....+. .+.
T Consensus 145 ~l~g-k~~lVlGAGGaaraia~~L~~~------G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~ 217 (312)
T 3t4e_A 145 DMRG-KTMVLLGAGGAATAIGAQAAIE------GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEA 217 (312)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHH
T ss_pred CcCC-CEEEEECcCHHHHHHHHHHHHc------CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhh
Confidence 4678 9999999999999999999998 88 78888887 44444444332 221000002233 556
Q ss_pred hccCCeEEEeecchh
Q 012479 176 ISGSDLVLLLISDAA 190 (462)
Q Consensus 176 v~~ADvViLavpd~a 190 (462)
++++|+||.+||...
T Consensus 218 l~~~DiIINaTp~Gm 232 (312)
T 3t4e_A 218 LASADILTNGTKVGM 232 (312)
T ss_dssp HHHCSEEEECSSTTS
T ss_pred ccCceEEEECCcCCC
Confidence 789999999999754
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.013 Score=59.29 Aligned_cols=92 Identities=21% Similarity=0.142 Sum_probs=58.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh-HHHHH--------------------HcCceecCCCcC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEAR--------------------AAGFTEENGTLG 170 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s-~~~A~--------------------~~G~~~~d~~~~ 170 (462)
.||||+|+|.+|..+++.|..+ .+++++...+..... ...++ ..++.. ..
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~-----~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v----~~ 73 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQ-----DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPV----EG 73 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCC----CC
T ss_pred eEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEE----CC
Confidence 5899999999999999998765 145654333322211 11112 222322 12
Q ss_pred CHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+..+...++|+|+.|+|.....+..+ ..+++.|+.|+++++.
T Consensus 74 ~~~~~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~sap~ 115 (343)
T 2yyy_A 74 TILDIIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAILQGGE 115 (343)
T ss_dssp BGGGTGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEECTTS
T ss_pred chHHhccCCCEEEECCCccccHHHHH--HHHHHCCCEEEECCCc
Confidence 34455578999999999877665554 4678889877776653
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0045 Score=61.49 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.|. .|..+|.-|... |..|.+..+. +.++++.+++||+||.
T Consensus 157 i~l~G-k~vvVvGrs~iVG~plA~lL~~~------gAtVtv~hs~-------------------T~~L~~~~~~ADIVI~ 210 (286)
T 4a5o_A 157 ADLYG-MDAVVVGASNIVGRPMALELLLG------GCTVTVTHRF-------------------TRDLADHVSRADLVVV 210 (286)
T ss_dssp CCCTT-CEEEEECTTSTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------CcCHHHHhccCCEEEE
Confidence 46899 9999999886 799999999988 8888776431 2367788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-.. ++. ...+|+|++|+|++
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvg 233 (286)
T 4a5o_A 211 AAGKPG---LVK--GEWIKEGAIVIDVG 233 (286)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECC
T ss_pred CCCCCC---CCC--HHHcCCCeEEEEec
Confidence 998422 222 24579999998886
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0038 Score=64.12 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=61.0
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCC---cEEEEEecCCchhHHHHHHcC------ce--ecCCC-cCCHhhhhcc
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARAAG------FT--EENGT-LGDIYETISG 178 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G---~~Vivg~r~~~~s~~~A~~~G------~~--~~d~~-~~~~~eav~~ 178 (462)
|+||+|||.|.+|.++++.|.+. | .+|++..|+.++..+.+.+.+ +. ..|-. ..+.++++++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~------g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~ 74 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN------REVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE 74 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC------TTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence 57999999999999999999987 6 278777776555444444321 21 10100 1234566777
Q ss_pred --CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 179 --SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 179 --ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+|+||.++|+.....+.+... +.|..+.+.++
T Consensus 75 ~~~DvVin~ag~~~~~~v~~a~l---~~g~~vvD~a~ 108 (405)
T 4ina_A 75 VKPQIVLNIALPYQDLTIMEACL---RTGVPYLDTAN 108 (405)
T ss_dssp HCCSEEEECSCGGGHHHHHHHHH---HHTCCEEESSC
T ss_pred hCCCEEEECCCcccChHHHHHHH---HhCCCEEEecC
Confidence 899999999987766666432 23444555544
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0043 Score=65.00 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=65.0
Q ss_pred CEEEEEccc----chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWG----SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G----~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
++|+|||.+ ..|..+.++|++. |-..++...+.... -.|... ..++.|+.+..|++++++|
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~------g~~~v~pVnP~~~~-----i~G~~~----y~sl~~lp~~~Dlavi~vp 73 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKVYPVNIKEEE-----VQGVKA----YKSVKDIPDEIDLAIIVVP 73 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEEEEECSSCSE-----ETTEEC----BSSTTSCSSCCSEEEECSC
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHc------CCCEEEEECCCCCe-----ECCEec----cCCHHHcCCCCCEEEEecC
Confidence 899999998 7899999999877 52233444433221 147664 5678888778999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
+..+.++++++... .-..+|.++.||.
T Consensus 74 ~~~~~~~v~e~~~~-Gi~~vv~~s~G~~ 100 (457)
T 2csu_A 74 KRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (457)
T ss_dssp HHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred HHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence 99999999986543 2344778888883
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0082 Score=60.56 Aligned_cols=71 Identities=23% Similarity=0.236 Sum_probs=44.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH--cC--ceecCC--CcCCHhhhhccC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGS 179 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~d~--~~~~~~eav~~A 179 (462)
... +||+|||.|.||.++|..|... |+ ++++.+....+....+.+ +. +..... ...+. +++++|
T Consensus 17 ~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~a 88 (331)
T 4aj2_A 17 VPQ-NKITVVGVGAVGMACAISILMK------DLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANS 88 (331)
T ss_dssp CCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCC
Confidence 344 8999999999999999999887 76 666655443322222221 11 110000 02344 469999
Q ss_pred CeEEEee
Q 012479 180 DLVLLLI 186 (462)
Q Consensus 180 DvViLav 186 (462)
|+||++.
T Consensus 89 DiVvi~a 95 (331)
T 4aj2_A 89 KLVIITA 95 (331)
T ss_dssp EEEEECC
T ss_pred CEEEEcc
Confidence 9999986
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.005 Score=62.02 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=44.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH--cC------ceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|.+|.++|..|... |+ ++++.+....+....+.+ +. ... ..+..+++++||+
T Consensus 10 ~kV~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i----~~~~~~a~~~aDi 79 (326)
T 3vku_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKI----YSAEYSDAKDADL 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEE----EECCGGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEE----EECcHHHhcCCCE
Confidence 8999999999999999999988 76 665555432222222211 11 111 2344678999999
Q ss_pred EEEeec
Q 012479 182 VLLLIS 187 (462)
Q Consensus 182 ViLavp 187 (462)
||++..
T Consensus 80 Vvi~ag 85 (326)
T 3vku_A 80 VVITAG 85 (326)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999865
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0011 Score=62.80 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=54.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-~ADvViLavpd~a 190 (462)
++|+|||+|++|.++++.+... . |++++...+.++..... ...|+.+. ...++++.++ +.|+|++|+|...
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~----~-g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFG----E-SFELRGFFDVDPEKVGR-PVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC----S-SEEEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CEEEEECccHHHHHHHHhHhhc----C-CcEEEEEEeCCHHHHhh-hhcCCeee--cHHhHHHHHHcCCCEEEEeCCchh
Confidence 6899999999999999864322 2 66766666654432211 11243321 1456777776 5899999999998
Q ss_pred HHHHHHHHHh
Q 012479 191 QADNYEKIFS 200 (462)
Q Consensus 191 ~~~vl~eI~~ 200 (462)
+.++.+.+..
T Consensus 153 ~~ei~~~l~~ 162 (211)
T 2dt5_A 153 AQKAADLLVA 162 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777644
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.014 Score=58.07 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=44.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCC--cEEEEEecCCchhHHHHHH--cCcee--cCCC--cCCHhhhhccCCeE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARA--AGFTE--ENGT--LGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G--~~Vivg~r~~~~s~~~A~~--~G~~~--~d~~--~~~~~eav~~ADvV 182 (462)
+||+|||. |.+|.+++..|... | .++++.+... ....+.+ .+... .... ..+.++++++||+|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~------~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvV 72 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEE
Confidence 58999998 99999999999877 6 3665555543 2223322 22110 0000 13577899999999
Q ss_pred EEeec
Q 012479 183 LLLIS 187 (462)
Q Consensus 183 iLavp 187 (462)
|++..
T Consensus 73 vi~ag 77 (314)
T 1mld_A 73 VIPAG 77 (314)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99874
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0025 Score=62.17 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=51.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc--------eecCCCcCCHhhhhcc
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--------TEENGTLGDIYETISG 178 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~--------~~~d~~~~~~~eav~~ 178 (462)
.++| +++.|+|.|-+|.+++..|.+. | +|++..|+.++..+.+++.+. .. + +.+..+.+.+
T Consensus 125 ~l~~-k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~-d--~~~~~~~~~~ 193 (287)
T 1nvt_A 125 RVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEV-K--FSGLDVDLDG 193 (287)
T ss_dssp CCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHE-E--EECTTCCCTT
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHHHHHHHhhhcccccceeE-E--EeeHHHhhCC
Confidence 4678 9999999999999999999998 9 998888765443344433211 10 0 2233566778
Q ss_pred CCeEEEeecchh
Q 012479 179 SDLVLLLISDAA 190 (462)
Q Consensus 179 ADvViLavpd~a 190 (462)
+|+||.++|...
T Consensus 194 ~DilVn~ag~~~ 205 (287)
T 1nvt_A 194 VDIIINATPIGM 205 (287)
T ss_dssp CCEEEECSCTTC
T ss_pred CCEEEECCCCCC
Confidence 999999998654
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0059 Score=60.70 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.|. .|..+|+-|... |..|.+..+. ..++.+.+++||+||.
T Consensus 155 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 208 (288)
T 1b0a_A 155 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 208 (288)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred CCCCC-CEEEEECCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 46889 9999999997 599999999988 8888776422 2467889999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++... ++. ...+|+|++|+|++
T Consensus 209 Avg~p~---lI~--~~~vk~GavVIDVg 231 (288)
T 1b0a_A 209 AVGKPG---FIP--GDWIKEGAIVIDVG 231 (288)
T ss_dssp CSCCTT---CBC--TTTSCTTCEEEECC
T ss_pred CCCCcC---cCC--HHHcCCCcEEEEcc
Confidence 999443 122 23469999998886
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.011 Score=56.88 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=56.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC-------------------chhHHHHHHc----
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (462)
...|++ ++|.|||+|.+|..++++|... |+ ++.+.++.. .+....++..
T Consensus 26 q~~l~~-~~VlVvG~Gg~G~~va~~La~~------Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 26 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhC-CeEEEEeeCHHHHHHHHHHHHc------CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 366888 9999999999999999999998 87 666665543 3333222221
Q ss_pred -Ccee--cCCCcC--CHhhhhccCCeEEEeecchhHHHHHHHH
Q 012479 161 -GFTE--ENGTLG--DIYETISGSDLVLLLISDAAQADNYEKI 198 (462)
Q Consensus 161 -G~~~--~d~~~~--~~~eav~~ADvViLavpd~a~~~vl~eI 198 (462)
++.. ...... +..+.++++|+||.++++......+.+.
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~ 141 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAG 141 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHH
Confidence 2211 011111 2346788999999999876655555543
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0089 Score=59.74 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=60.4
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.|+ .|..+|+-|... |-.|.+..+. ..++.+.+++||+||.
T Consensus 161 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 214 (301)
T 1a4i_A 161 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV 214 (301)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHhC------CCeEEEEECC-------------------cccHHHHhccCCEEEE
Confidence 46889 9999999996 699999999988 8888776421 2478899999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+++.... +. ...+|+|++|+|++-
T Consensus 215 Avg~p~~---I~--~~~vk~GavVIDVgi 238 (301)
T 1a4i_A 215 ATGQPEM---VK--GEWIKPGAIVIDCGI 238 (301)
T ss_dssp CCCCTTC---BC--GGGSCTTCEEEECCC
T ss_pred CCCCccc---CC--HHHcCCCcEEEEccC
Confidence 9996332 21 234789999998863
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0079 Score=58.88 Aligned_cols=155 Identities=15% Similarity=0.112 Sum_probs=88.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH---HHHHHc-----CceecCCCcCCHhhhhccCCeE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAA-----GFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~---~~A~~~-----G~~~~d~~~~~~~eav~~ADvV 182 (462)
+||+|+|+ |.||..+++.+... .+++++...+.+.... +..+.. |+.. ..+.+++++++|+|
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~-----~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~----~~dl~~~l~~~DvV 76 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 76 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee----cCCHHHHhcCCCEE
Confidence 68999999 99999999988754 1666654444432110 111111 2222 34677888899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchh-h--------HHhhhcCc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS-V--------RRLYVQGK 252 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~-v--------r~lf~~G~ 252 (462)
|-.++|....+++..... .|.- |+=..|++....+. .....+.+. +...||..-.. + .+.|.++
T Consensus 77 IDft~p~~~~~~~~~a~~---~G~~vVigTtG~~~e~~~~-L~~~a~~~~-vv~a~N~siGvn~~~~l~~~aa~~~~~~- 150 (273)
T 1dih_A 77 IDFTRPEGTLNHLAFCRQ---HGKGMVIGTTGFDEAGKQA-IRDAAADIA-IVFAANFSVGVNVMLKLLEKAAKVMGDY- 150 (273)
T ss_dssp EECSCHHHHHHHHHHHHH---TTCEEEECCCCCCHHHHHH-HHHHTTTSC-EEECSCCCHHHHHHHHHHHHHHHHHTTT-
T ss_pred EEcCChHHHHHHHHHHHh---CCCCEEEECCCCCHHHHHH-HHHhcCCCC-EEEEecCcHHHHHHHHHHHHHHHhcCCC-
Confidence 978888877776665443 4443 33355776432221 111123444 45577743322 1 1112111
Q ss_pred cccCCCceEEEeecc----C-CCHHHHHHHHHHHHHhCC
Q 012479 253 EINGAGINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (462)
Q Consensus 253 ~~~G~Gv~aliav~q----d-~tgea~e~a~al~~aiG~ 286 (462)
.-+-. +-.|+ | ++|.++.+++.+....|.
T Consensus 151 ----~diei-iE~Hh~~K~DaPSGTA~~~ae~i~~~~~~ 184 (273)
T 1dih_A 151 ----TDIEI-IEAHHRHKVDAPSGTALAMGEAIAHALDK 184 (273)
T ss_dssp ----SEEEE-EEEECTTCCSSSCHHHHHHHHHHHHHTTC
T ss_pred ----CCEEE-EEeecCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 11222 33333 3 689999999999988875
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.013 Score=61.49 Aligned_cols=86 Identities=20% Similarity=0.180 Sum_probs=55.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHc-C----------------------ceecCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA-G----------------------FTEENG 167 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~-G----------------------~~~~d~ 167 (462)
.||||||+|.||..++..+... .+++++...+.+. +..+.+++. | ...
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~-----~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v--- 95 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM-----QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAV--- 95 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-----SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEE---
T ss_pred eEEEEECChHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceE---
Confidence 5899999999999999988754 1566554444433 333333333 5 111
Q ss_pred CcCCHhhhhc--cCCeEEEeecch-hHHHHHHHHHhcCCCCcEEE
Q 012479 168 TLGDIYETIS--GSDLVLLLISDA-AQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 168 ~~~~~~eav~--~ADvViLavpd~-a~~~vl~eI~~~Lk~gaiL~ 209 (462)
+.|.+++++ +.|+|+++||+. .+.++... .|+.|+-|.
T Consensus 96 -~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~---AL~AGKHVv 136 (446)
T 3upl_A 96 -TDDNDLILSNPLIDVIIDATGIPEVGAETGIA---AIRNGKHLV 136 (446)
T ss_dssp -ESCHHHHHTCTTCCEEEECSCCHHHHHHHHHH---HHHTTCEEE
T ss_pred -ECCHHHHhcCCCCCEEEEcCCChHHHHHHHHH---HHHcCCcEE
Confidence 468888886 589999999864 44554433 345677554
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.012 Score=59.75 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=46.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH--cC-ceecC-CCcCCHhhhhcc
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG-FTEEN-GTLGDIYETISG 178 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G-~~~~d-~~~~~~~eav~~ 178 (462)
+++.+ +||+|||. |.+|.++|..+... |+ ++++.+....+....+.+ .+ +.... ....+..+++++
T Consensus 4 ~~~~~-~KV~ViGaaG~VG~~~a~~l~~~------g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d 76 (343)
T 3fi9_A 4 SYLTE-EKLTIVGAAGMIGSNMAQTAAMM------RLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD 76 (343)
T ss_dssp CCSCS-SEEEEETTTSHHHHHHHHHHHHT------TCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT
T ss_pred cccCC-CEEEEECCCChHHHHHHHHHHhc------CCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC
Confidence 45666 99999997 99999999998887 75 565544332222211111 11 11000 012467789999
Q ss_pred CCeEEEee
Q 012479 179 SDLVLLLI 186 (462)
Q Consensus 179 ADvViLav 186 (462)
||+||++.
T Consensus 77 ADvVvita 84 (343)
T 3fi9_A 77 AKYIVSSG 84 (343)
T ss_dssp EEEEEECC
T ss_pred CCEEEEcc
Confidence 99999985
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.013 Score=50.89 Aligned_cols=109 Identities=18% Similarity=0.101 Sum_probs=72.2
Q ss_pred CCEEEEEcc----cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 111 INQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.++|+|||. +..|..+.++|++. |++|+--+.+... -.|... ..++.|+-. -|++++++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~------g~~V~pVnP~~~~------i~G~~~----y~sl~dlp~-vDlavi~~ 66 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSH------GHEFIPVGRKKGE------VLGKTI----INERPVIEG-VDTVTLYI 66 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHH------TCCEEEESSSCSE------ETTEEC----BCSCCCCTT-CCEEEECS
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHC------CCeEEEECCCCCc------CCCeec----cCChHHCCC-CCEEEEEe
Confidence 378999997 56899999999998 8876544433211 146654 456666555 89999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchh
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
|++.+.++++++... ... .|.+..|+.-..+.+ +.-..+++++ ||+.+-.
T Consensus 67 p~~~v~~~v~e~~~~-g~k-~v~~~~G~~~~e~~~--~a~~~Girvv---~nC~gv~ 116 (122)
T 3ff4_A 67 NPQNQLSEYNYILSL-KPK-RVIFNPGTENEELEE--ILSENGIEPV---IGCTLVM 116 (122)
T ss_dssp CHHHHGGGHHHHHHH-CCS-EEEECTTCCCHHHHH--HHHHTTCEEE---ESCHHHH
T ss_pred CHHHHHHHHHHHHhc-CCC-EEEECCCCChHHHHH--HHHHcCCeEE---CCcCeEE
Confidence 999999999987653 223 367889983211111 1112467777 3766544
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.027 Score=59.61 Aligned_cols=73 Identities=18% Similarity=0.126 Sum_probs=43.1
Q ss_pred CEEEEEcccchH--HHHHHHHHHhhhhhcC-CcEEEEEecCCchhHHHHH--------HcCceecCCCcCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQG--PAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG--~AiA~~Lrds~~~~g~-G~~Vivg~r~~~~s~~~A~--------~~G~~~~d~~~~~~~eav~~AD 180 (462)
+||+|||.|+|| .++|..|... .+. +.+|++.++..++ .+.+. ..+....=....|..+++++||
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~---~~l~~~eV~L~Di~~e~-l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD 79 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKT---PGLSGSTVTLMDIDEER-LDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDAD 79 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC---GGGTTCEEEEECSCHHH-HHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHHhc---CcCCCCEEEEEeCCHHH-HHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCC
Confidence 799999999985 5556677532 011 4577766654332 21111 1111100001357778999999
Q ss_pred eEEEeecc
Q 012479 181 LVLLLISD 188 (462)
Q Consensus 181 vViLavpd 188 (462)
+||+++|.
T Consensus 80 ~VIiaagv 87 (480)
T 1obb_A 80 FVINTAMV 87 (480)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999974
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.021 Score=57.57 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=58.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecC---CchhHHHHHHcCcee--------cCCCc--CCHhhhhc
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK---GSRSFAEARAAGFTE--------ENGTL--GDIYETIS 177 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~---~~~s~~~A~~~G~~~--------~d~~~--~~~~eav~ 177 (462)
+||+||| .|.+|..+++.|.+. .+++++...+. ..+.. ....+... .+-.+ .+.++..+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-----p~~ev~~i~~s~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-----PMFELTALAASERSAGKKY--KDACYWFQDRDIPENIKDMVVIPTDPKHEEF 81 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-----SSEEEEEEEECTTTTTSBH--HHHSCCCCSSCCCHHHHTCBCEESCTTSGGG
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-----CCCEEEEEEcccccccccH--HHhcccccccccccCceeeEEEeCCHHHHhc
Confidence 6899999 899999999998765 13565444332 11222 22222110 00001 24455556
Q ss_pred -cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 178 -GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 178 -~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++|+||+|+|.....++.+.+. +.|..|++.+|.
T Consensus 82 ~~~DvV~~atp~~~~~~~a~~~~---~aG~~VId~s~~ 116 (354)
T 1ys4_A 82 EDVDIVFSALPSDLAKKFEPEFA---KEGKLIFSNASA 116 (354)
T ss_dssp TTCCEEEECCCHHHHHHHHHHHH---HTTCEEEECCST
T ss_pred CCCCEEEECCCchHHHHHHHHHH---HCCCEEEECCch
Confidence 8999999999988888777654 457778877764
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.021 Score=58.97 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=63.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecC----Cchh--------HHHHHHcCceecCCCcCCHh
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRS--------FAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~----~~~s--------~~~A~~~G~~~~d~~~~~~~ 173 (462)
.++. .||.|+|.|.+|.++|+.|... |. +|++.+++ ..+. ...|++.... ....++.
T Consensus 189 ~l~~-~kVVv~GAGaAG~~iAkll~~~------G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~---~~~~~L~ 258 (388)
T 1vl6_A 189 KIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE---RLSGDLE 258 (388)
T ss_dssp CTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT---CCCSCHH
T ss_pred CCCC-cEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc---CchhhHH
Confidence 5666 8999999999999999999988 88 78888776 3321 3445443211 1246799
Q ss_pred hhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 012479 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 174 eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
|+++++|++|=+..|... =+++...|+++.+|.
T Consensus 259 eav~~ADVlIG~Sap~l~---t~emVk~Ma~~pIIf 291 (388)
T 1vl6_A 259 TALEGADFFIGVSRGNIL---KPEWIKKMSRKPVIF 291 (388)
T ss_dssp HHHTTCSEEEECSCSSCS---CHHHHTTSCSSCEEE
T ss_pred HHHccCCEEEEeCCCCcc---CHHHHHhcCCCCEEE
Confidence 999999999988764322 124444577777663
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.027 Score=52.03 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=51.8
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc-ee--cCCCcCCHhhhhccCC
Q 012479 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TE--ENGTLGDIYETISGSD 180 (462)
Q Consensus 105 ~~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~-~~--~d~~~~~~~eav~~AD 180 (462)
...|+| |+|.|.|. |.+|.++++.|.+. |++|++..|+.++ .+.....++ .. .|-+ .+..++++++|
T Consensus 16 ~~~l~~-~~ilVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~-~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~D 86 (236)
T 3e8x_A 16 NLYFQG-MRVLVVGANGKVARYLLSELKNK------GHEPVAMVRNEEQ-GPELRERGASDIVVANLE-EDFSHAFASID 86 (236)
T ss_dssp -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSGGG-HHHHHHTTCSEEEECCTT-SCCGGGGTTCS
T ss_pred ccCcCC-CeEEEECCCChHHHHHHHHHHhC------CCeEEEEECChHH-HHHHHhCCCceEEEcccH-HHHHHHHcCCC
Confidence 467889 99999997 99999999999999 9998887776554 333334455 22 1211 45567888999
Q ss_pred eEEEeecc
Q 012479 181 LVLLLISD 188 (462)
Q Consensus 181 vViLavpd 188 (462)
+||.+...
T Consensus 87 ~vi~~ag~ 94 (236)
T 3e8x_A 87 AVVFAAGS 94 (236)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99988764
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.021 Score=57.40 Aligned_cols=98 Identities=14% Similarity=0.057 Sum_probs=56.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhh-hhhcCCcEEEEEecCCch---------hH-HHHHHcCceecCCCcCCHhhhhc--c
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSL-AEAKSDIVVKVGLRKGSR---------SF-AEARAAGFTEENGTLGDIYETIS--G 178 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~-~~~g~G~~Vivg~r~~~~---------s~-~~A~~~G~~~~d~~~~~~~eav~--~ 178 (462)
.+|+|||+|.+|..+++.|.+.- ...|.+++++...+.+.. .| +.+++.|... +. ..+..+.+. +
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-~~-~~d~~e~l~~~~ 82 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-DR-AFSGPEDLMGEA 82 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-SS-BCCSGGGGTTSC
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-cc-cCCHHHHhcCCC
Confidence 47999999999999999998630 011224454433333221 12 2333445221 10 115566664 5
Q ss_pred CCeEEEeecchhHH-HHHHHHHhcCCCCcEEEEe
Q 012479 179 SDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 179 ADvViLavpd~a~~-~vl~eI~~~Lk~gaiL~~a 211 (462)
.|+|+.++|+..+. ..++.+...|+.|+.|+.+
T Consensus 83 iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta 116 (325)
T 3ing_A 83 ADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA 116 (325)
T ss_dssp CSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence 89999999987553 3344455566778766543
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0099 Score=58.03 Aligned_cols=80 Identities=15% Similarity=0.017 Sum_probs=53.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
++|++||+|+||..+++. + +++++..++ ++.. +.|... +.|+++++.++|+|+-|.++++.
T Consensus 13 ~rV~i~G~GaIG~~v~~~-~--------~leLv~v~~--~k~g----elgv~a----~~d~d~lla~pD~VVe~A~~~av 73 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL-G--------NFEKIYAYD--RISK----DIPGVV----RLDEFQVPSDVSTVVECASPEAV 73 (253)
T ss_dssp CEEEEECCSHHHHHHHHH-S--------CCSEEEEEC--SSCC----CCSSSE----ECSSCCCCTTCCEEEECSCHHHH
T ss_pred ceEEEECcCHHHHHHHhc-C--------CcEEEEEEe--cccc----ccCcee----eCCHHHHhhCCCEEEECCCHHHH
Confidence 899999999999999887 2 444433333 2211 125543 56788888899999999987755
Q ss_pred HHHHHHHHhcCCCCcEE-EEecc
Q 012479 192 ADNYEKIFSCMKPNSIL-GLSHG 213 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL-~~a~G 213 (462)
.+.+ .+.|+.|.-| +.+-|
T Consensus 74 ~e~~---~~iL~aG~dvv~~S~g 93 (253)
T 1j5p_A 74 KEYS---LQILKNPVNYIIISTS 93 (253)
T ss_dssp HHHH---HHHTTSSSEEEECCGG
T ss_pred HHHH---HHHHHCCCCEEEcChh
Confidence 5544 4557788754 44444
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.014 Score=61.06 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=51.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-HHHcCceecCCCcCC---Hhhh-hccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-A~~~G~~~~d~~~~~---~~ea-v~~ADvViLav 186 (462)
|||-|+|+|..|..+|+.|... |++|++-+.. +...+. ..+.++....+...+ .++| +++||+++.+|
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~------~~~v~vId~d-~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE------NNDITIVDKD-GDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST------TEEEEEEESC-HHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCEEEEECC-HHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 8999999999999999999988 9888776554 444444 445565321111222 3333 78999999888
Q ss_pred cchhHH
Q 012479 187 SDAAQA 192 (462)
Q Consensus 187 pd~a~~ 192 (462)
+++..-
T Consensus 77 ~~De~N 82 (461)
T 4g65_A 77 NTDETN 82 (461)
T ss_dssp SCHHHH
T ss_pred CChHHH
Confidence 876543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.049 Score=51.40 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=49.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
|||.|+|.|.+|..+++.|.+. |++|++..|...+ .......++........+.+ ++++|+||.+..+.
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQ------GWRIIGTSRNPDQ-MEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGG------TCEEEEEESCGGG-HHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred CcEEEECCcHHHHHHHHHHHHC------CCEEEEEEcChhh-hhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 8999999999999999999998 9998877776443 33444456532111133333 78899999988643
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.026 Score=55.64 Aligned_cols=91 Identities=11% Similarity=0.188 Sum_probs=59.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH---hhh-hccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YET-ISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~ea-v~~ADvViLavp 187 (462)
++|.|+|+|..|..+++.|.+. |+ +++. +.+++..+ +.+.|+..-.+...+. .++ +++||.|+++++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~------g~-v~vi-d~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGS------EV-FVLA-EDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE 186 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGS------CE-EEEE-SCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------Cc-EEEE-eCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence 6899999999999999999988 87 6554 45455555 6666764322222232 234 788999999999
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEEe
Q 012479 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-aiL~~a 211 (462)
++...-..-..+..+.+. .++.-+
T Consensus 187 ~d~~n~~~~~~ar~~~~~~~iiar~ 211 (336)
T 1lnq_A 187 SDSETIHCILGIRKIDESVRIIAEA 211 (336)
T ss_dssp SHHHHHHHHHHHHTTCTTSEEEEEC
T ss_pred ccHHHHHHHHHHHHHCCCCeEEEEE
Confidence 875443333444445554 344433
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.021 Score=57.98 Aligned_cols=92 Identities=11% Similarity=0.039 Sum_probs=57.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee----cCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE----ENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~----~d~~~~~~~eav~~ADvViLav 186 (462)
+||+|+| .|.+|..+.+.|.+. ..++++...+..+...+.....+... .+-.+.+ ++..+++|+||+|+
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~at 90 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH-----PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCL 90 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC-----SSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECC
T ss_pred cEEEEECcCCHHHHHHHHHHHcC-----CCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcC
Confidence 6899999 899999999999876 13465544443222222222222110 0000122 44557899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|.....+.... + +.|..+++.++
T Consensus 91 p~~~s~~~a~~---~-~aG~~VId~sa 113 (359)
T 1xyg_A 91 PHGTTQEIIKE---L-PTALKIVDLSA 113 (359)
T ss_dssp CTTTHHHHHHT---S-CTTCEEEECSS
T ss_pred CchhHHHHHHH---H-hCCCEEEECCc
Confidence 99887766543 3 66888888776
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.019 Score=56.91 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=57.3
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~m-G~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.|.+ |..+|+.|... |.|-.|.+..+. ..++.+.+++||+||.
T Consensus 154 i~l~g-k~vvVvG~s~iVG~p~A~lL~~~----g~~atVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (281)
T 2c2x_A 154 ISIAG-AHVVVIGRGVTVGRPLGLLLTRR----SENATVTLCHTG-------------------TRDLPALTRQADIVVA 209 (281)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHTST----TTCCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCcHHHHHHHHHHhcC----CCCCEEEEEECc-------------------hhHHHHHHhhCCEEEE
Confidence 46899 99999999986 99999998765 102467665432 2468889999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-... +. ...+|+|++|+|++
T Consensus 210 Avg~p~~---I~--~~~vk~GavVIDVg 232 (281)
T 2c2x_A 210 AVGVAHL---LT--ADMVRPGAAVIDVG 232 (281)
T ss_dssp CSCCTTC---BC--GGGSCTTCEEEECC
T ss_pred CCCCCcc---cC--HHHcCCCcEEEEcc
Confidence 9984331 22 23478999988875
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.034 Score=53.08 Aligned_cols=89 Identities=10% Similarity=0.121 Sum_probs=60.6
Q ss_pred cccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH-HHHHHcCceecCCCcCCHhhhhcc
Q 012479 100 LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISG 178 (462)
Q Consensus 100 ~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~d~~~~~~~eav~~ 178 (462)
-||.. -.|+| ++|.|||.|.+|..-++.|.+. |.+|+|......+.. +.+.+.++....+ ... .+-+.+
T Consensus 22 ~~Pif-l~L~g-k~VLVVGgG~va~~ka~~Ll~~------GA~VtVvap~~~~~l~~l~~~~~i~~i~~-~~~-~~dL~~ 91 (223)
T 3dfz_A 22 MYTVM-LDLKG-RSVLVVGGGTIATRRIKGFLQE------GAAITVVAPTVSAEINEWEAKGQLRVKRK-KVG-EEDLLN 91 (223)
T ss_dssp CCEEE-ECCTT-CCEEEECCSHHHHHHHHHHGGG------CCCEEEECSSCCHHHHHHHHTTSCEEECS-CCC-GGGSSS
T ss_pred ccccE-EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHcCCcEEEEC-CCC-HhHhCC
Confidence 36666 56899 9999999999999999999998 888777665433333 3343333432111 122 345788
Q ss_pred CCeEEEeecchhHHHHHHHH
Q 012479 179 SDLVLLLISDAAQADNYEKI 198 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI 198 (462)
+|+||.++.+...-..+.+.
T Consensus 92 adLVIaAT~d~~~N~~I~~~ 111 (223)
T 3dfz_A 92 VFFIVVATNDQAVNKFVKQH 111 (223)
T ss_dssp CSEEEECCCCTHHHHHHHHH
T ss_pred CCEEEECCCCHHHHHHHHHH
Confidence 99999999887665544444
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.023 Score=57.37 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=56.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee--cCCCcCCHhhhhccCCeEEEeecc
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~--~d~~~~~~~eav~~ADvViLavpd 188 (462)
+||+||| .|.+|..+.+.|.+. ..++++...+..+...+.....+... .+-.+.+.++ +.++|+||+|+|.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSH-----PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPH 78 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC-----TTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCc
Confidence 6899999 799999999999865 13465544443221111111111100 0111223333 5789999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
....++.+.+. +.|..|++.++
T Consensus 79 ~~s~~~a~~~~---~aG~~VId~Sa 100 (345)
T 2ozp_A 79 GVFAREFDRYS---ALAPVLVDLSA 100 (345)
T ss_dssp THHHHTHHHHH---TTCSEEEECSS
T ss_pred HHHHHHHHHHH---HCCCEEEEcCc
Confidence 98877776543 56777777776
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.019 Score=56.91 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=42.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc----CceecCC--CcCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG--TLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~----G~~~~d~--~~~~~~eav~~ADvVi 183 (462)
|||+|||.|.+|.++|..|..+ ++ ++++.+....+..-.|.+. -+...+. ...+..+++++||+|+
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVv 74 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIV 74 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEE
Confidence 6999999999999999999887 65 5555444332223233221 0110000 0122346789999999
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
++.
T Consensus 75 itA 77 (294)
T 2x0j_A 75 VTA 77 (294)
T ss_dssp ECC
T ss_pred Eec
Confidence 976
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.042 Score=57.56 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=56.0
Q ss_pred CEEEEEcccchHHHHHHHHHHh---hh-hhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds---~~-~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLa 185 (462)
.+|||||+|.+|..++..|++. +. ..|.+++++...+.+....+.. ..+... ..+.+++++ +.|+|+.+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~----~~d~~ell~d~diDvVve~ 85 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPL----TTNPFDVVDDPEIDIVVEL 85 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCE----ESCTHHHHTCTTCCEEEEC
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcc----cCCHHHHhcCCCCCEEEEc
Confidence 3799999999999999887642 11 1123556544444433222211 123332 467888886 57999999
Q ss_pred ecc-hhHHHHHHHHHhcCCCCcEEEE
Q 012479 186 ISD-AAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 186 vpd-~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
+|+ ..+.++..+ .|+.|+.|..
T Consensus 86 tp~~~~h~~~~~~---AL~aGKhVvt 108 (444)
T 3mtj_A 86 IGGLEPARELVMQ---AIANGKHVVT 108 (444)
T ss_dssp CCSSTTHHHHHHH---HHHTTCEEEE
T ss_pred CCCchHHHHHHHH---HHHcCCEEEE
Confidence 996 777776654 3455665543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.071 Score=53.15 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=43.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCC--cEEEEEecCCchhHHHHH--Hc-Cc--eecCC--CcCCHhhhhccCCe
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEAR--AA-GF--TEENG--TLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G--~~Vivg~r~~~~s~~~A~--~~-G~--~~~d~--~~~~~~eav~~ADv 181 (462)
+||+||| .|.+|.+++..|.+. | .+|++.+.... ...+. .. .. .. .. ...+..+++++||+
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~------g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v-~~~~~t~d~~~al~gaDv 79 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMN------PLVSVLHLYDVVNA--PGVTADISHMDTGAVV-RGFLGQQQLEAALTGMDL 79 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHC------TTEEEEEEEESSSH--HHHHHHHHTSCSSCEE-EEEESHHHHHHHHTTCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEeCCCc--HhHHHHhhcccccceE-EEEeCCCCHHHHcCCCCE
Confidence 7999999 899999999999887 7 46655443332 22221 11 11 11 00 01245788999999
Q ss_pred EEEeec
Q 012479 182 VLLLIS 187 (462)
Q Consensus 182 ViLavp 187 (462)
||++.+
T Consensus 80 Vi~~ag 85 (326)
T 1smk_A 80 IIVPAG 85 (326)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999985
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.031 Score=58.51 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=64.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc---EEEEEe----cC----Cchh---HH-----HHHHcCceecC
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGL----RK----GSRS---FA-----EARAAGFTEEN 166 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~---~Vivg~----r~----~~~s---~~-----~A~~~G~~~~d 166 (462)
..+++ ++|.|+|.|..|.+++..|.+. |. +|++.+ |+ .... .. .+...+..
T Consensus 182 ~~l~~-~rvlvlGAGgAg~aia~~L~~~------G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~--- 251 (439)
T 2dvm_A 182 KKISE-ITLALFGAGAAGFATLRILTEA------GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGE--- 251 (439)
T ss_dssp CCTTT-CCEEEECCSHHHHHHHHHHHHT------TCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTT---
T ss_pred CCccC-CEEEEECccHHHHHHHHHHHHc------CCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccc---
Confidence 35678 8999999999999999999998 87 788888 65 2211 11 11111110
Q ss_pred CCcCCHhhhhccCCeEEEeecc--hhHHHHHHHHHhcCCCCcEEEEe
Q 012479 167 GTLGDIYETISGSDLVLLLISD--AAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd--~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
....+..|+++++|+||-++|. ....+ +....|+++.+|.+.
T Consensus 252 ~~~~~L~e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDL 295 (439)
T 2dvm_A 252 NIEGGPQEALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPL 295 (439)
T ss_dssp CCCSSHHHHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEEC
T ss_pred cccccHHHHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEEC
Confidence 0134678999999999999997 54432 334567788888777
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.047 Score=55.16 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=57.8
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCC---c--hhHHHHH--HcCceecCCCcC---CHhhhhccC
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---S--RSFAEAR--AAGFTEENGTLG---DIYETISGS 179 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~---~--~s~~~A~--~~G~~~~d~~~~---~~~eav~~A 179 (462)
|+||+||| .|.+|..+.+.|.+. ..+++.....+. + +.....- -.|.. +-.+. +.++.++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-----p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~--~~~v~~~~~~~~~~~~~ 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-----PHMNITALTVSAQSNDAGKLISDLHPQLKGIV--ELPLQPMSDISEFSPGV 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTSBHHHHCGGGTTTC--CCBEEEESSGGGTCTTC
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-----CCCcEEEEEecCchhhcCCchHHhCccccCcc--ceeEeccCCHHHHhcCC
Confidence 47999999 599999999988874 145554333221 1 2222110 01221 00111 344444899
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|+||+|+|.....++.+++. +.|..++|.++
T Consensus 77 Dvvf~a~p~~~s~~~~~~~~---~~g~~vIDlSa 107 (337)
T 3dr3_A 77 DVVFLATAHEVSHDLAPQFL---EAGCVVFDLSG 107 (337)
T ss_dssp SEEEECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEEcCC
Confidence 99999999988888777654 46887887766
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.069 Score=48.06 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=46.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC-HhhhhccCCeEEEeecc
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~-~~eav~~ADvViLavpd 188 (462)
|||.|+| .|.+|.++++.|.+. |++|++..|..++..... .++......+.+ ..+++.++|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR------GHEVTAIVRNAGKITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC------CCEEEEEEcCchhhhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 5899999 599999999999999 999888777644322221 343221000111 11678899999999864
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.06 Score=53.35 Aligned_cols=67 Identities=18% Similarity=0.085 Sum_probs=48.4
Q ss_pred CCEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEe
Q 012479 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL 185 (462)
Q Consensus 111 ikkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~eav-~~ADvViLa 185 (462)
+|+|.|||.|-+|.+ +|+.|++. |++|.+.++... ...+..++.|+....+ .+.++.. .++|+||+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~------G~~V~~~D~~~~~~~~~~L~~~gi~v~~g--~~~~~l~~~~~d~vV~S 73 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA------GFEVSGCDAKMYPPMSTQLEALGIDVYEG--FDAAQLDEFKADVYVIG 73 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT------TCEEEEEESSCCTTHHHHHHHTTCEEEES--CCGGGGGSCCCSEEEEC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC------CCEEEEEcCCCCcHHHHHHHhCCCEEECC--CCHHHcCCCCCCEEEEC
Confidence 489999999999996 99999999 999988776542 3345556678764211 2344444 479999984
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.13 Score=51.89 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=52.6
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHH----HHHHcCc--eecCCCcCCHhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFA----EARAAGF--TEENGTLGDIYE 174 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~----~A~~~G~--~~~d~~~~~~~e 174 (462)
.|+| .||++||=| +++.|++..+..- |.++.+...+ ++...+ .|++.|. .. +.+++|
T Consensus 152 ~l~g-l~ia~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 220 (333)
T 1duv_G 152 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNITL----TEDVAK 220 (333)
T ss_dssp CGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEE----ESCHHH
T ss_pred CCCC-cEEEEECCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE----EECHHH
Confidence 5788 999999986 9999999999888 9888776543 222222 3346773 33 578999
Q ss_pred hhccCCeEEEeec
Q 012479 175 TISGSDLVLLLIS 187 (462)
Q Consensus 175 av~~ADvViLavp 187 (462)
++++||+|+..+=
T Consensus 221 av~~aDvvytd~w 233 (333)
T 1duv_G 221 GVEGADFIYTDVW 233 (333)
T ss_dssp HHTTCSEEEECCS
T ss_pred HhCCCCEEEeCCc
Confidence 9999999998554
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.11 Score=54.90 Aligned_cols=77 Identities=21% Similarity=0.099 Sum_probs=43.3
Q ss_pred CEEEEEcccch-HHHHHHHHHHhhhhhcC-CcEEEEEecCCchhH---HHHH----HcCceecCCCcCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQ-GPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSF---AEAR----AAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~m-G~AiA~~Lrds~~~~g~-G~~Vivg~r~~~~s~---~~A~----~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
+||+|||.|+. |.++|..|.... .+. +.+|+.+++..++.. +.+. ..+....=....|..+++++||+|
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~--~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~V 106 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHL--EEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 106 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTT--TTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCC--CCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEE
Confidence 59999999997 555665665430 011 235666555432211 1111 111110000135778899999999
Q ss_pred EEeecchh
Q 012479 183 LLLISDAA 190 (462)
Q Consensus 183 iLavpd~a 190 (462)
|+++|...
T Consensus 107 Viaag~~~ 114 (472)
T 1u8x_X 107 MAHIRVGK 114 (472)
T ss_dssp EECCCTTH
T ss_pred EEcCCCcc
Confidence 99998743
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.14 Score=51.78 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=52.4
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcC--ceecCCCcCCHhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G--~~~~d~~~~~~~e 174 (462)
.|+| .||++||=| +++.|++..+..- |.++.+...+. ....+ .|++.| +.. +.+++|
T Consensus 152 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 220 (335)
T 1dxh_A 152 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTL----TEDPKE 220 (335)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEE----ESCHHH
T ss_pred CcCC-eEEEEecCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE----EeCHHH
Confidence 5788 999999986 9999999999888 99887765432 22222 333667 333 578999
Q ss_pred hhccCCeEEEeec
Q 012479 175 TISGSDLVLLLIS 187 (462)
Q Consensus 175 av~~ADvViLavp 187 (462)
++++||+|+..+=
T Consensus 221 av~~aDvvytd~w 233 (335)
T 1dxh_A 221 AVKGVDFVHTDVW 233 (335)
T ss_dssp HTTTCSEEEECCC
T ss_pred HhCCCCEEEeCCc
Confidence 9999999998554
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.074 Score=55.68 Aligned_cols=75 Identities=20% Similarity=0.094 Sum_probs=44.4
Q ss_pred CEEEEEcccch-HHHHHHHHHH--hhhhhcC-CcEEEEEecCC--chhHH---HHH----HcCceecCCCcCCHhhhhcc
Q 012479 112 NQIGVIGWGSQ-GPAQAQNLRD--SLAEAKS-DIVVKVGLRKG--SRSFA---EAR----AAGFTEENGTLGDIYETISG 178 (462)
Q Consensus 112 kkIgIIG~G~m-G~AiA~~Lrd--s~~~~g~-G~~Vivg~r~~--~~s~~---~A~----~~G~~~~d~~~~~~~eav~~ 178 (462)
+||+|||.|+. |.+++..|.. . +. +.+|+..++.. .+... .+. ..+....=....|..+++++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~----~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g 83 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYH----ELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 83 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTT----TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC----CCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC
Confidence 69999999998 7777777765 3 11 22566555543 22111 111 12211000013577889999
Q ss_pred CCeEEEeecchh
Q 012479 179 SDLVLLLISDAA 190 (462)
Q Consensus 179 ADvViLavpd~a 190 (462)
||+||++++...
T Consensus 84 AD~VVitagv~~ 95 (450)
T 1s6y_A 84 ADFVTTQFRVGG 95 (450)
T ss_dssp CSEEEECCCTTH
T ss_pred CCEEEEcCCCCC
Confidence 999999999643
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.18 Score=50.55 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=52.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcC--ceecCCCcCCHhh
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G--~~~~d~~~~~~~e 174 (462)
..|+| .||++||= +++.+|++..+..- |.++.+..... ....+ .|++.| +.. +.+++|
T Consensus 151 g~l~g-l~va~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~----~~d~~e 219 (315)
T 1pvv_A 151 GTIKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFEL----LHDPVK 219 (315)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEE----ESCHHH
T ss_pred CCcCC-cEEEEECCCcchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHHH
Confidence 35788 99999997 79999999999887 98887765432 22222 333667 333 578999
Q ss_pred hhccCCeEEEee
Q 012479 175 TISGSDLVLLLI 186 (462)
Q Consensus 175 av~~ADvViLav 186 (462)
++++||+|+..+
T Consensus 220 av~~aDvvy~~~ 231 (315)
T 1pvv_A 220 AVKDADVIYTDV 231 (315)
T ss_dssp HTTTCSEEEECC
T ss_pred HhCCCCEEEEcc
Confidence 999999999855
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.019 Score=58.34 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=20.3
Q ss_pred CEEEEEcccchHHHHHHHHHHh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds 133 (462)
.+|||||+|.+|..++..|++.
T Consensus 5 i~vgIiG~G~VG~~~~~~l~~~ 26 (358)
T 1ebf_A 5 VNVAVIGAGVVGSAFLDQLLAM 26 (358)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC
T ss_pred EEEEEEecCHHHHHHHHHHHhc
Confidence 5899999999999999999875
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.059 Score=54.37 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=55.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEec-CCchhHHHHHHcCce--------ecCCCc--CCHhhhhccC
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFT--------EENGTL--GDIYETISGS 179 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r-~~~~s~~~A~~~G~~--------~~d~~~--~~~~eav~~A 179 (462)
.||+||| .|.+|..+.+.|.+. ..++++...+ ..+.........++. ..+-.+ .+.++ ++++
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~v 78 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKH-----PYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDV 78 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTC
T ss_pred cEEEEECcCCHHHHHHHHHHHhC-----CCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCC
Confidence 6899999 899999999988765 1346544432 111111122222211 000001 13333 4789
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|+||+|+|.....++..... +.|..|++.++
T Consensus 79 DvVf~atp~~~s~~~a~~~~---~aG~~VId~s~ 109 (350)
T 2ep5_A 79 DVVLSALPNELAESIELELV---KNGKIVVSNAS 109 (350)
T ss_dssp SEEEECCCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEECCc
Confidence 99999999988887776654 45766777665
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.068 Score=51.29 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=54.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC-------------------chhHHHHHHc----
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (462)
...|++ ++|.|||+|-+|..++.+|..+ |+ ++.+.++.. .+....++..
T Consensus 23 q~~l~~-~~VlvvG~GglG~~va~~La~~------Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 23 QQKLLD-SQVLIIGLGGLGTPAALYLAGA------GVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp HHHHHT-CEEEEECCSTTHHHHHHHHHHT------TCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhc-CcEEEEccCHHHHHHHHHHHHc------CCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 467888 9999999999999999999998 87 555543321 1222222111
Q ss_pred -Cceec--CCCc--CCHhhhhccCCeEEEeecchhHHHHHHHH
Q 012479 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKI 198 (462)
Q Consensus 161 -G~~~~--d~~~--~~~~eav~~ADvViLavpd~a~~~vl~eI 198 (462)
++... +... .+..+.++++|+||.++........+.+.
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~ 138 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAA 138 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 22110 0001 12346778899999999876655555553
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.099 Score=52.60 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=55.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC--CchhHHHHHHc----C------------ceecCC------
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAA----G------------FTEENG------ 167 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~--~~~s~~~A~~~----G------------~~~~d~------ 167 (462)
.||||+|+|.+|.-+++.|.+. .+++++...+. +........++ | +.. ++
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~-----~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v-~g~~i~v~ 77 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS-----GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVI-NGNPITIF 77 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHcC-----CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEE-CCeEEEEE
Confidence 5999999999999999998765 14676554442 33322222221 1 000 00
Q ss_pred CcCCHhhhh---ccCCeEEEeecchhHHHHHHHHHhcCCCCc-EEEEec
Q 012479 168 TLGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSH 212 (462)
Q Consensus 168 ~~~~~~eav---~~ADvViLavpd~a~~~vl~eI~~~Lk~ga-iL~~a~ 212 (462)
...++++.- .++|+||.|+|.....+... .+++.|. .|.+++
T Consensus 78 ~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~---~~l~aGak~V~iSa 123 (335)
T 1u8f_O 78 QERDPSKIKWGDAGAEYVVESTGVFTTMEKAG---AHLQGGAKRVIISA 123 (335)
T ss_dssp CCSSGGGCCTTTTTCCEEEECSSSCCSHHHHG---GGGGGTCSEEEESS
T ss_pred ecCCHHHCccccCCCCEEEECCCchhhHHHHH---HHHhCCCeEEEecc
Confidence 012444441 57899999999988877654 4566784 444444
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.086 Score=51.93 Aligned_cols=66 Identities=24% Similarity=0.269 Sum_probs=41.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc--EEEEEecC-CchhH-HHHHHc--------CceecCCCcCCHhhhhcc
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK-GSRSF-AEARAA--------GFTEENGTLGDIYETISG 178 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~-~~~s~-~~A~~~--------G~~~~d~~~~~~~eav~~ 178 (462)
+||+||| .|.+|.+++..|... ++ ++.+.+++ +.... ..+.+. .... ..+..+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~------~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v----~~~~~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV----RQGGYEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEE----EECCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEE----EeCCHHHhCC
Confidence 5899999 999999999999877 64 45444441 22211 111110 1111 1123678999
Q ss_pred CCeEEEeec
Q 012479 179 SDLVLLLIS 187 (462)
Q Consensus 179 ADvViLavp 187 (462)
||+||++..
T Consensus 71 aDvVi~~ag 79 (303)
T 1o6z_A 71 SDVVVITAG 79 (303)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEcCC
Confidence 999999975
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.11 Score=50.12 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=53.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEeecch
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-~ADvViLavpd~ 189 (462)
+||+|+|+ |.||..++..+.+. .+++++...+.+ .+.++++. ++|+||=.++|.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-----~~~elva~~d~~-------------------~dl~~~~~~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-----DDLTLSAELDAG-------------------DPLSLLTDGNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-----TTCEEEEEECTT-------------------CCTHHHHHTTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEccC-------------------CCHHHHhccCCcEEEEccChH
Confidence 48999996 99999999998754 167776555532 12334443 789999888888
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeccchHH
Q 012479 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~ 217 (462)
...+.+..... .|. +|+-+.|++-.
T Consensus 57 a~~~~~~~a~~---~g~~~VigTTG~~~e 82 (245)
T 1p9l_A 57 VVMGNLEFLID---NGIHAVVGTTGFTAE 82 (245)
T ss_dssp THHHHHHHHHH---TTCEEEECCCCCCHH
T ss_pred HHHHHHHHHHH---cCCCEEEcCCCCCHH
Confidence 88777765443 344 44445677543
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.054 Score=56.12 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=50.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC---chhHHHHHHcCceecCCCcCCHhhhhcc-CCeE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETISG-SDLV 182 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~---~~s~~~A~~~G~~~~d~~~~~~~eav~~-ADvV 182 (462)
.++| ++|.|||.|-.|.+.|+-|++. |++|.+.++.. +...+..++.|+....+ .+.++.+.+ +|+|
T Consensus 6 ~~~~-k~v~viG~G~sG~s~A~~l~~~------G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g--~~~~~~~~~~~d~v 76 (451)
T 3lk7_A 6 TFEN-KKVLVLGLARSGEAAARLLAKL------GAIVTVNDGKPFDENPTAQSLLEEGIKVVCG--SHPLELLDEDFCYM 76 (451)
T ss_dssp TTTT-CEEEEECCTTTHHHHHHHHHHT------TCEEEEEESSCGGGCHHHHHHHHTTCEEEES--CCCGGGGGSCEEEE
T ss_pred hcCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEeCCcccCChHHHHHHhCCCEEEEC--CChHHhhcCCCCEE
Confidence 4678 9999999999999999999999 99998877643 23345556678754211 123345566 8999
Q ss_pred EEe
Q 012479 183 LLL 185 (462)
Q Consensus 183 iLa 185 (462)
|+.
T Consensus 77 v~s 79 (451)
T 3lk7_A 77 IKN 79 (451)
T ss_dssp EEC
T ss_pred EEC
Confidence 985
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.085 Score=54.94 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=49.5
Q ss_pred cCCCCEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 108 FNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+..+++|.|||+|-.|.+ +|+-|.+. |.+|.+.+...+...+..++.|+.... ....+.++++|+||+.
T Consensus 15 ~~~~~~i~viG~G~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~---g~~~~~~~~a~~vv~s 84 (475)
T 1p3d_A 15 MRRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIYI---GHAEEHIEGASVVVVS 84 (475)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEEE---SCCGGGGTTCSEEEEC
T ss_pred cccCCEEEEEeecHHHHHHHHHHHHhC------CCEEEEECCCCCHHHHHHHhCCCEEEC---CCCHHHcCCCCEEEEC
Confidence 344589999999999997 99999998 999887776554444455567876421 1222456789998884
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.062 Score=49.01 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=47.1
Q ss_pred CEEEEEc-ccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCc-hhHHHH-HHcCceecCCCcCC---HhhhhccCCeEEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEA-RAAGFTEENGTLGD---IYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~-~s~~~A-~~~G~~~~d~~~~~---~~eav~~ADvViL 184 (462)
|+|.|+| .|.+|.++++.|. +. |++|++..|+.+ +..+.+ ...++......+.+ ..++++++|+||.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~ 79 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT------DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV 79 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC------CCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC------CceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 5699999 6999999999999 78 999888777643 222221 11222210011223 3467889999999
Q ss_pred eecch
Q 012479 185 LISDA 189 (462)
Q Consensus 185 avpd~ 189 (462)
+....
T Consensus 80 ~ag~~ 84 (221)
T 3r6d_A 80 GAMES 84 (221)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 88753
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.094 Score=52.20 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=43.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCC----ch-hHHHHH--HcC---ceecCCCcCCHh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG----SR-SFAEAR--AAG---FTEENGTLGDIY 173 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~----~~-s~~~A~--~~G---~~~~d~~~~~~~ 173 (462)
+||+|||. |.+|.+++..|... |+ +++. .+.+ .. ....+. ..+ +...-....+..
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~------~~~~~~~~~ev~l-~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~ 78 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG------DMLGKDQPVILQL-LEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPM 78 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEE-ECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCcCCCCCCEEEE-EcCCCccccccchhhHHHHhhhcccccCcEEEecCcH
Confidence 79999997 99999999999877 64 5554 4443 21 111111 121 110000125678
Q ss_pred hhhccCCeEEEeec
Q 012479 174 ETISGSDLVLLLIS 187 (462)
Q Consensus 174 eav~~ADvViLavp 187 (462)
+++++||+||++..
T Consensus 79 ~al~~aD~Vi~~ag 92 (329)
T 1b8p_A 79 TAFKDADVALLVGA 92 (329)
T ss_dssp HHTTTCSEEEECCC
T ss_pred HHhCCCCEEEEeCC
Confidence 89999999998864
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.045 Score=53.02 Aligned_cols=72 Identities=22% Similarity=0.194 Sum_probs=49.6
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----Cc--eecCCCcCC---Hhhhhc
Q 012479 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEENGTLGD---IYETIS 177 (462)
Q Consensus 108 l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~--~~~d~~~~~---~~eav~ 177 (462)
++| +++.|+| .|-+|.+++..|.+. |.+|++..|+.++..+.+.+. ++ ...| +.+ ..++++
T Consensus 117 l~g-k~vlVtGaaGGiG~aia~~L~~~------G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D--~~~~~~~~~~~~ 187 (287)
T 1lu9_A 117 VKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE--TADDASRAEAVK 187 (287)
T ss_dssp CTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEE--CCSHHHHHHHTT
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHHHhcCCcEEEEec--CCCHHHHHHHHH
Confidence 678 9999999 999999999999998 988888877644433333221 21 1101 222 345677
Q ss_pred cCCeEEEeecc
Q 012479 178 GSDLVLLLISD 188 (462)
Q Consensus 178 ~ADvViLavpd 188 (462)
++|+||.+++.
T Consensus 188 ~~DvlVn~ag~ 198 (287)
T 1lu9_A 188 GAHFVFTAGAI 198 (287)
T ss_dssp TCSEEEECCCT
T ss_pred hCCEEEECCCc
Confidence 78888888864
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.036 Score=51.39 Aligned_cols=84 Identities=13% Similarity=0.183 Sum_probs=52.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCC---HhhhhccCCeEEEee
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvViLav 186 (462)
|+|.|.| .|-+|.++++.|.+. | .+|++..|..++..+ ....++......+.+ ..++++++|+||.+.
T Consensus 24 k~vlVtGatG~iG~~l~~~L~~~------G~~~V~~~~R~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a 96 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLADK------QTIKQTLFARQPAKIHK-PYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL 96 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC------TTEEEEEEESSGGGSCS-SCCTTEEEEECCTTCHHHHHHHHTTCSEEEEEC
T ss_pred cEEEEEeCCcHHHHHHHHHHHhC------CCceEEEEEcChhhhcc-cccCCcEEEEecCCCHHHHHHHhcCCCEEEEcC
Confidence 7899999 699999999999998 8 788877776433211 111122211111223 446788999999887
Q ss_pred cchhHHHHHHHHHhcC
Q 012479 187 SDAAQADNYEKIFSCM 202 (462)
Q Consensus 187 pd~a~~~vl~eI~~~L 202 (462)
.........+.+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~ 112 (236)
T 3qvo_A 97 TGEDLDIQANSVIAAM 112 (236)
T ss_dssp CSTTHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHH
Confidence 7644433333444443
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.095 Score=55.08 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=52.2
Q ss_pred CCEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe--ec
Q 012479 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL--IS 187 (462)
Q Consensus 111 ikkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa--vp 187 (462)
+++|.|||.|-.|.+ +|+-|++. |.+|.+.+...+...+..++.|+... .....+.+.++|+||+. +|
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~Spgi~ 92 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNSVTQHLTALGAQIY---FHHRPENVLDASVVVVSTAIS 92 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEE---SSCCGGGGTTCSEEEECTTSC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHCCCEEE---CCCCHHHcCCCCEEEECCCCC
Confidence 489999999999996 89999999 99998877665555566677788652 22334457789999985 55
Q ss_pred c
Q 012479 188 D 188 (462)
Q Consensus 188 d 188 (462)
+
T Consensus 93 ~ 93 (494)
T 4hv4_A 93 A 93 (494)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.29 Score=49.50 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=62.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav------~~AD 180 (462)
.| .+|.|+|.|.+|...++-++.. |. +|+ +.+.+++..+.+++.|.... +....+..+.+ +..|
T Consensus 213 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D 284 (404)
T 3ip1_A 213 PG-DNVVILGGGPIGLAAVAILKHA------GASKVI-LSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAK 284 (404)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 46 8999999999999999999988 88 554 45555666788899886421 11112333332 2589
Q ss_pred eEEEeecch--hHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDA--AQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~--a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||-++... .....++-+...++++-.++..+
T Consensus 285 ~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred EEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 999999876 22233333323347776665554
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.24 Score=49.35 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=60.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCc--CCHhhhhc-----cC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~eav~-----~A 179 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++ ...+++..+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~-~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 191 PG-STCAVFGLGGVGFSAIVGCKAA------GASRIIG-VGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEE-ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-ECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 46 8999999999999999999888 87 5654 4444556788888886320 1000 12333332 57
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEe
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~g-aiL~~a 211 (462)
|+||-++... +.+++....++++ -.++..
T Consensus 263 Dvvid~~g~~---~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 263 DYAVECAGRI---ETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHHhcCCCEEEEE
Confidence 9999998742 2345556677776 555444
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.11 Score=51.89 Aligned_cols=71 Identities=21% Similarity=0.227 Sum_probs=52.7
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcC--ceecCCCcCCHh
Q 012479 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIY 173 (462)
Q Consensus 106 ~~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G--~~~~d~~~~~~~ 173 (462)
..|+| .||++||=| ++.+|++..+..- |.++.+...+. ....+ .|++.| +.. +.+++
T Consensus 144 g~l~g-l~va~vGD~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~ 212 (307)
T 2i6u_A 144 GALRG-LRLSYFGDGANNMAHSLLLGGVTA------GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTV----TADAH 212 (307)
T ss_dssp SCCTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEE----ESCHH
T ss_pred CCcCC-eEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHH
Confidence 35788 999999986 9999999999888 99887765432 12222 233667 333 57899
Q ss_pred hhhccCCeEEEeec
Q 012479 174 ETISGSDLVLLLIS 187 (462)
Q Consensus 174 eav~~ADvViLavp 187 (462)
|++++||+|+..+=
T Consensus 213 eav~~aDvvy~~~w 226 (307)
T 2i6u_A 213 AAAAGADVLVTDTW 226 (307)
T ss_dssp HHHTTCSEEEECCS
T ss_pred HHhcCCCEEEecce
Confidence 99999999998553
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.11 Score=52.32 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=52.2
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcC--ceecCCCcCCHhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAG--FTEENGTLGDIYE 174 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G--~~~~d~~~~~~~e 174 (462)
.|+| .||++||=| ++..|++..+..- |.++.+...+. +...+ .|++.| +.. +.+++|
T Consensus 164 ~l~g-l~va~vGD~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~----~~d~~e 232 (325)
T 1vlv_A 164 RLKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSF----TSNLEE 232 (325)
T ss_dssp CSTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEE----ESCHHH
T ss_pred CcCC-cEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EcCHHH
Confidence 5788 999999985 9999999999888 99887765432 22222 333667 333 578999
Q ss_pred hhccCCeEEEeec
Q 012479 175 TISGSDLVLLLIS 187 (462)
Q Consensus 175 av~~ADvViLavp 187 (462)
++++||+|+..+=
T Consensus 233 av~~aDvvyt~~w 245 (325)
T 1vlv_A 233 ALAGADVVYTDVW 245 (325)
T ss_dssp HHTTCSEEEECCC
T ss_pred HHccCCEEEeccc
Confidence 9999999998543
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.26 Score=49.22 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=50.6
Q ss_pred ccC-CCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHH----HHcCceecCCCcCCHhhhh
Q 012479 107 AFN-GINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~-gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A----~~~G~~~~d~~~~~~~eav 176 (462)
.|+ | .||++||= +++.+|++..+..- |.++.+...+ +....+.+ ++.|.... .+.+++|++
T Consensus 142 ~l~~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~--~~~d~~eav 212 (307)
T 3tpf_A 142 MQNGI-AKVAFIGDSNNMCNSWLITAAIL------GFEISIAMPKNYKISPEIWEFAMKQALISGAKIS--LGYDKFEAL 212 (307)
T ss_dssp CGGGC-CEEEEESCSSHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EESCHHHHH
T ss_pred CCCCC-CEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 477 9 99999995 58999999999887 8887776443 22222333 35554210 157899999
Q ss_pred ccCCeEEEee
Q 012479 177 SGSDLVLLLI 186 (462)
Q Consensus 177 ~~ADvViLav 186 (462)
++||+|+..+
T Consensus 213 ~~aDvvyt~~ 222 (307)
T 3tpf_A 213 KDKDVVITDT 222 (307)
T ss_dssp TTCSEEEECC
T ss_pred cCCCEEEecC
Confidence 9999999877
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=94.00 E-value=0.057 Score=54.81 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=54.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCC------cEEEEEecCC--chhHHHH----HH-cCceecCCCcCCHhhhhc
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD------IVVKVGLRKG--SRSFAEA----RA-AGFTEENGTLGDIYETIS 177 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G------~~Vivg~r~~--~~s~~~A----~~-~G~~~~d~~~~~~~eav~ 177 (462)
+||+||| .|.+|..+.+.|.+. + ++++...+.. .+..... .. ...... ..+ .+.++
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~------~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~---~~~-~~~~~ 79 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGH------PAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE---PTE-AAVLG 79 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------HHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE---ECC-HHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHcC------CCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec---cCC-HHHhc
Confidence 7999999 999999999999876 5 2444433321 1211100 00 011110 123 34466
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++|+||+|+|.....++.+.+ +.|..++|.++-
T Consensus 80 ~~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa~ 112 (352)
T 2nqt_A 80 GHDAVFLALPHGHSAVLAQQL----SPETLIIDCGAD 112 (352)
T ss_dssp TCSEEEECCTTSCCHHHHHHS----CTTSEEEECSST
T ss_pred CCCEEEECCCCcchHHHHHHH----hCCCEEEEECCC
Confidence 899999999998777666544 467777777653
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.15 Score=48.51 Aligned_cols=81 Identities=23% Similarity=0.299 Sum_probs=52.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh--HHHH------HHcCceecCCCcCC---HhhhhccC
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEA------RAAGFTEENGTLGD---IYETISGS 179 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s--~~~A------~~~G~~~~d~~~~~---~~eav~~A 179 (462)
++|.|+|. |.+|.++++.|.+. |++|++..|..+.. .+.+ ...|+........+ ..++++++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~ 78 (308)
T 1qyc_A 5 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 78 (308)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC------CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCC
Confidence 78999996 99999999999998 88887777753221 1111 23455321111233 44678899
Q ss_pred CeEEEeecch---hHHHHHHHH
Q 012479 180 DLVLLLISDA---AQADNYEKI 198 (462)
Q Consensus 180 DvViLavpd~---a~~~vl~eI 198 (462)
|+||.+.... .+..+++..
T Consensus 79 d~vi~~a~~~~~~~~~~l~~aa 100 (308)
T 1qyc_A 79 DVVISTVGSLQIESQVNIIKAI 100 (308)
T ss_dssp SEEEECCCGGGSGGGHHHHHHH
T ss_pred CEEEECCcchhhhhHHHHHHHH
Confidence 9999998753 334455543
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.085 Score=53.13 Aligned_cols=89 Identities=13% Similarity=0.099 Sum_probs=52.1
Q ss_pred CEEEEEcccchHHHHHHHHHHh---hhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds---~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
.+|||||+|.+|..++..|++. +...|.+++++...+++.. ++ .++.. .....|.++++ +.|+|+.|+|.
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~---~~--~~~~~-~~~~~d~~~ll-~iDvVve~t~~ 76 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR---KP--RAIPQ-ELLRAEPFDLL-EADLVVEAMGG 76 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT---SC--CSSCG-GGEESSCCCCT-TCSEEEECCCC
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH---Hh--hccCc-ccccCCHHHHh-CCCEEEECCCC
Confidence 5799999999999999999875 1111113444333333211 11 12211 11145777878 99999999997
Q ss_pred hhH-HHHHHHHHhcCCCCcEEEE
Q 012479 189 AAQ-ADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 189 ~a~-~~vl~eI~~~Lk~gaiL~~ 210 (462)
..+ .+...+ .|+.|+.|+.
T Consensus 77 ~~~a~~~~~~---AL~aGKhVVt 96 (332)
T 2ejw_A 77 VEAPLRLVLP---ALEAGIPLIT 96 (332)
T ss_dssp SHHHHHHHHH---HHHTTCCEEE
T ss_pred cHHHHHHHHH---HHHcCCeEEE
Confidence 643 334433 3456665443
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.31 Score=48.64 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=60.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCc--CCHhhhhc-----cC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~eav~-----~A 179 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++ ...+++..+.+++.|.... |... .+..+.+. ..
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~-~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 195 PG-STCAVFGLGCVGLSAIIGCKIA------GASRIIA-IDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-ECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-EcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 46 8999999999999999999888 87 5654 4444556788888886420 1000 12333332 47
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEe
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~g-aiL~~a 211 (462)
|+||-++... +.+++....++++ -.++..
T Consensus 267 Dvvid~~G~~---~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 267 DYSLDCAGTA---QTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SEEEESSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCCEEEEE
Confidence 9999988742 2345555677776 555443
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.33 Score=47.47 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=62.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav------~~AD 180 (462)
.+| ++|.|+|.|.+|...++-++.. |..+++..+.+++..+.+++.|.... +....+..+.+ ...|
T Consensus 159 ~~g-~~VlV~GaG~vG~~aiq~ak~~------G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 159 CEN-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp CTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred CCC-CEEEEECCCCcchHHHHHHHHc------CCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcc
Confidence 457 8999999999999999999888 87666666665666889999996421 11112233322 3468
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+|+-++... ..++.....++++-.++..+
T Consensus 232 ~v~d~~G~~---~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 232 LILETAGVP---QTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp EEEECSCSH---HHHHHHHHHCCTTCEEEECC
T ss_pred ccccccccc---chhhhhhheecCCeEEEEEe
Confidence 888777532 23444445667776665443
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.31 Score=43.96 Aligned_cols=70 Identities=20% Similarity=0.119 Sum_probs=46.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC-HhhhhccCCeEEEeecc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~-~~eav~~ADvViLavpd 188 (462)
|||.|+|. |.+|.++++.|.+. |.+|++..|...+ .......++......+.+ ..++++++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~-~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR------GHEVLAVVRDPQK-AADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC------CCEEEEEEecccc-cccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 57999997 99999999999999 9998877775333 222222343221000111 11678899999998854
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.084 Score=52.85 Aligned_cols=93 Identities=12% Similarity=0.065 Sum_probs=52.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhh--hcCCcEEEE-EecCCchh--------HHHHH-HcCceecCCCcC---CHhhhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAE--AKSDIVVKV-GLRKGSRS--------FAEAR-AAGFTEENGTLG---DIYETI 176 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~--~g~G~~Viv-g~r~~~~s--------~~~A~-~~G~~~~d~~~~---~~~eav 176 (462)
.+|||||+|.+|..++..|.+.-+. .|.+++++. .+++..+. +.... ..++.. ... +.++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDS---LEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGG---CCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCccc---ccCCCCCHHHHh
Confidence 5799999999999999999875110 111244433 33332211 11111 123210 023 777776
Q ss_pred -ccCCeEEEeecch----hHHHHHHHHHhcCCCCcEEEE
Q 012479 177 -SGSDLVLLLISDA----AQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 177 -~~ADvViLavpd~----a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
.+.|+|+.++|.. .+.+++.+ .|+.|+.|+.
T Consensus 84 ~~~iDvVv~~t~~~~~~~~~~~~~~~---AL~aGkhVvt 119 (331)
T 3c8m_A 84 ARDFDIVVDATPASADGKKELAFYKE---TFENGKDVVT 119 (331)
T ss_dssp HSSCSEEEECSCCCSSSHHHHHHHHH---HHHTTCEEEE
T ss_pred CCCCCEEEECCCCCCccchHHHHHHH---HHHCCCeEEe
Confidence 4689999999985 44445443 3456776554
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.084 Score=52.84 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=48.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHHHHHcC--ceecCCCcCCHhhhhccC
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG--FTEENGTLGDIYETISGS 179 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~A~~~G--~~~~d~~~~~~~eav~~A 179 (462)
.|+| .||++||= +++..|++..+..- |.++.+..... .... +++.| +.. +.+++|++++|
T Consensus 151 ~l~g-lkva~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~--~~~~g~~v~~----~~d~~eav~~a 217 (309)
T 4f2g_A 151 PIRG-KTVAWVGDANNMLYTWIQAARIL------DFKLQLSTPPGYALDAKLV--DAESAPFYQV----FDDPNEACKGA 217 (309)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCGGGCCCGGGS--CGGGGGGEEE----CSSHHHHTTTC
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHc------CCEEEEECCcccCCCHHHH--HHHcCCeEEE----EcCHHHHhcCC
Confidence 4789 99999994 58999999999887 88877764321 1111 22333 333 57899999999
Q ss_pred CeEEEee
Q 012479 180 DLVLLLI 186 (462)
Q Consensus 180 DvViLav 186 (462)
|+|+..+
T Consensus 218 Dvvyt~~ 224 (309)
T 4f2g_A 218 DLVTTDV 224 (309)
T ss_dssp SEEEECC
T ss_pred CEEEecc
Confidence 9999854
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.79 E-value=0.32 Score=48.50 Aligned_cols=92 Identities=22% Similarity=0.293 Sum_probs=59.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCc--CCHhhhhc-----cC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~eav~-----~A 179 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++. ..+++..+.+++.|.... |... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~~-~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 191 QG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGV-DINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEE-CSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEE-cCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 46 8999999999999999999988 87 56544 444556788888886320 1000 12333332 47
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEe
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~g-aiL~~a 211 (462)
|+||-++... +.+++....++++ -.++..
T Consensus 263 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 263 DFSFEVIGRL---DTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHHBCTTTCEEEEC
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCcEEEEe
Confidence 9999998752 2344555567776 555444
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.094 Score=52.27 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=61.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc--hhHHHHHHcCceecCCCcCCHhhhh----ccCC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETI----SGSD 180 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~eav----~~AD 180 (462)
.++| ++|.|+|.|.+|...++.++.. |.+|++..+... +..+.+++.|....| .. +..+.+ ...|
T Consensus 178 ~~~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 178 TLNC-RKVLVVGTGPIGVLFTLLFRTY------GLEVWMANRREPTEVEQTVIEETKTNYYN-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp SSTT-CEEEEESCHHHHHHHHHHHHHH------TCEEEEEESSCCCHHHHHHHHHHTCEEEE-CT-TCSHHHHHHHCCEE
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCccchHHHHHHHHhCCceec-hH-HHHHHHHHhCCCCC
Confidence 4568 9999999999999999999988 888776666540 345777788875311 11 222222 3479
Q ss_pred eEEEeecchhHHHHH-HHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNY-EKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl-~eI~~~Lk~gaiL~~a 211 (462)
+||-++.... .+ +...+.|+++-.++..
T Consensus 249 ~vid~~g~~~---~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 249 VIIDATGADV---NILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEECCCCCT---HHHHHHGGGEEEEEEEEEC
T ss_pred EEEECCCChH---HHHHHHHHHHhcCCEEEEE
Confidence 9998887532 23 4555666665544433
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.1 Score=51.56 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=62.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
+| .+|.|+|.|.+|...++-++.. |.+|++..+. ++..+.+++.|.... ..+.++..+..|+||-++..
T Consensus 176 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~v---~~~~~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 176 KG-TKVGVAGFGGLGSMAVKYAVAM------GAEVSVFARN-EHKKQDALSMGVKHF---YTDPKQCKEELDFIISTIPT 244 (348)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSS-STTHHHHHHTTCSEE---ESSGGGCCSCEEEEEECCCS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHhcCCCee---cCCHHHHhcCCCEEEECCCc
Confidence 57 8999999999999999999988 8887655444 455788888887531 22333333478999999886
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEec
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
.. .++.....++++-.++..+
T Consensus 245 ~~---~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 245 HY---DLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp CC---CHHHHHTTEEEEEEEEECC
T ss_pred HH---HHHHHHHHHhcCCEEEEEC
Confidence 52 2334455667766655443
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.35 Score=48.15 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=60.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCc--CCHhhhhc-----cC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~eav~-----~A 179 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++ ...+++..+.+++.|.... +... .+..+.++ ..
T Consensus 192 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 192 PG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIA-VDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-ECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEE-EcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 46 8999999999999999999988 87 5654 4444556788888886320 1000 12333332 47
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEe
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~g-aiL~~a 211 (462)
|+||-++... +.++.....++++ -.++..
T Consensus 264 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 264 DFSLECVGNV---GVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCCH---HHHHHHHHHhhcCCcEEEEE
Confidence 9999988752 2345556677776 555443
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=93.74 E-value=0.16 Score=50.99 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=48.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHH----HHHcC--ceecCCCcCCHhh
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAG--FTEENGTLGDIYE 174 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G--~~~~d~~~~~~~e 174 (462)
..|+| .||++||=| ++.+|++..+..- |.++.+..... ....+. |++.| +.. +.+++|
T Consensus 151 g~l~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~e 219 (321)
T 1oth_A 151 SSLKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLL----TNDPLE 219 (321)
T ss_dssp SCCTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CCcCC-cEEEEECCchhhHHHHHHHHHHc------CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHH
Confidence 35788 999999986 4777777777666 88887765432 222232 33455 333 578999
Q ss_pred hhccCCeEEEee
Q 012479 175 TISGSDLVLLLI 186 (462)
Q Consensus 175 av~~ADvViLav 186 (462)
++++||+|+.-+
T Consensus 220 av~~aDvvy~d~ 231 (321)
T 1oth_A 220 AAHGGNVLITDT 231 (321)
T ss_dssp HHTTCSEEEECC
T ss_pred HhccCCEEEEec
Confidence 999999999965
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.24 Score=43.85 Aligned_cols=70 Identities=21% Similarity=0.289 Sum_probs=46.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---HhhhhccCCeEEEeec
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvViLavp 187 (462)
|+|.|+|. |.+|.++++.|.+. |++|++..|+..+... ....++......+.+ ..++++++|+||.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPS-EGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCS-SSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC------CCeEEEEEeChhhccc-ccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 78999997 99999999999998 9988877775432211 001232211111223 4467888999999876
Q ss_pred c
Q 012479 188 D 188 (462)
Q Consensus 188 d 188 (462)
.
T Consensus 77 ~ 77 (206)
T 1hdo_A 77 T 77 (206)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.16 Score=51.45 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=50.6
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHH----HHHcCc--eecCCCcCCHhhh
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAGF--TEENGTLGDIYET 175 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~----A~~~G~--~~~d~~~~~~~ea 175 (462)
.|+| .||++||= +++..|++..+..- |.++.+...+ ++...+. |++.|. .. +.+++|+
T Consensus 176 ~l~g-lkva~vGD~~nva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~----~~d~~ea 244 (340)
T 4ep1_A 176 TFKG-IKLAYVGDGNNVCHSLLLASAKV------GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEI----LHNPELA 244 (340)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEE----ESCHHHH
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE----ECCHHHH
Confidence 4788 99999995 58899999999887 8888776443 2222223 345663 33 5789999
Q ss_pred hccCCeEEEee
Q 012479 176 ISGSDLVLLLI 186 (462)
Q Consensus 176 v~~ADvViLav 186 (462)
+++||+|+..+
T Consensus 245 v~~aDVvyt~~ 255 (340)
T 4ep1_A 245 VNEADFIYTDV 255 (340)
T ss_dssp HTTCSEEEECC
T ss_pred hCCCCEEEecC
Confidence 99999999865
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.19 Score=45.57 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=47.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC----HhhhhccCCeEEEee
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD----IYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~----~~eav~~ADvViLav 186 (462)
|||.|+| .|.+|.++++.|.+. |++|++..|..++..+. .++......+.+ ..+++++.|+||.+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a 71 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT------DYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVS 71 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS------SCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence 5899999 899999999999998 99988877764432111 232211111233 445788899999988
Q ss_pred cch
Q 012479 187 SDA 189 (462)
Q Consensus 187 pd~ 189 (462)
...
T Consensus 72 g~~ 74 (219)
T 3dqp_A 72 GSG 74 (219)
T ss_dssp CCT
T ss_pred cCC
Confidence 753
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.34 Score=48.18 Aligned_cols=92 Identities=20% Similarity=0.196 Sum_probs=60.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCc--CCHhhhhc-----cC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~--~~~~eav~-----~A 179 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++ ...+++..+.+++.|.... +... .+..+.++ ..
T Consensus 190 ~g-~~VlV~GaG~vG~~avqla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 190 PG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIG-VDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEE-ECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-EcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 46 8999999999999999999988 87 5654 4444556788888886320 1000 12333332 47
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEe
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLS 211 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~g-aiL~~a 211 (462)
|+||-++... +.+++....++++ -.++..
T Consensus 262 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 262 DYSFECIGNV---KVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEEC
T ss_pred CEEEECCCcH---HHHHHHHHhhccCCcEEEEE
Confidence 9999998752 2345556677776 555544
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=93.60 E-value=0.33 Score=46.49 Aligned_cols=75 Identities=21% Similarity=0.161 Sum_probs=48.9
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH------cCce---ecCCC-cCCHhh
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA------AGFT---EENGT-LGDIYE 174 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~------~G~~---~~d~~-~~~~~e 174 (462)
..++| |+|.|.|. |-+|.++++.|.+. |++|++..|...+....... .++. ..|-+ ..+..+
T Consensus 7 ~~~~~-~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 79 (342)
T 1y1p_A 7 VLPEG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE 79 (342)
T ss_dssp SSCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT
T ss_pred cCCCC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH
Confidence 45678 99999997 99999999999998 99888777753322111111 1221 11111 123456
Q ss_pred hhccCCeEEEeec
Q 012479 175 TISGSDLVLLLIS 187 (462)
Q Consensus 175 av~~ADvViLavp 187 (462)
++++.|+||.+..
T Consensus 80 ~~~~~d~vih~A~ 92 (342)
T 1y1p_A 80 VIKGAAGVAHIAS 92 (342)
T ss_dssp TTTTCSEEEECCC
T ss_pred HHcCCCEEEEeCC
Confidence 6778999998764
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.16 Score=51.90 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=52.8
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHH----HHHHcC--ceecCCCcCCHh
Q 012479 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFA----EARAAG--FTEENGTLGDIY 173 (462)
Q Consensus 106 ~~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~----~A~~~G--~~~~d~~~~~~~ 173 (462)
..|+| .||++||=| +++.|++..+..- |.+|.+.... ++...+ .|++.| +.. +.+++
T Consensus 172 g~l~g-l~va~vGD~~~rva~Sl~~~~~~l------G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~----~~d~~ 240 (359)
T 2w37_A 172 GKLQG-LTLTFMGDGRNNVANSLLVTGAIL------GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVI----TDDLD 240 (359)
T ss_dssp SCCTT-CEEEEESCTTSHHHHHHHHHHHHH------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEE----ESCHH
T ss_pred CCcCC-eEEEEECCCccchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHH
Confidence 35788 999999986 9999999999888 9888776543 222222 333667 433 57899
Q ss_pred hhhccCCeEEEeec
Q 012479 174 ETISGSDLVLLLIS 187 (462)
Q Consensus 174 eav~~ADvViLavp 187 (462)
|++++||+|+..+=
T Consensus 241 eav~~aDvvytd~w 254 (359)
T 2w37_A 241 EGLKGSNVVYTDVW 254 (359)
T ss_dssp HHHTTCSEEEECCS
T ss_pred HHhcCCCEEEEccc
Confidence 99999999998654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.18 Score=50.54 Aligned_cols=93 Identities=20% Similarity=0.226 Sum_probs=61.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc--------c
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS--------G 178 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~--------~ 178 (462)
.| .+|.|+|.|.+|...++-++.. |. +|+ ..+.+++..+.+++.|.... +....+..+.+. .
T Consensus 182 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg 253 (370)
T 4ej6_A 182 AG-STVAILGGGVIGLLTVQLARLA------GATTVI-LSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGG 253 (370)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCC
Confidence 57 8999999999999999999888 88 554 45555666788888887421 111224444444 3
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
.|+||-++... +.+++....++++-.++..+
T Consensus 254 ~Dvvid~~G~~---~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 254 VDVVIECAGVA---ETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp EEEEEECSCCH---HHHHHHHHHEEEEEEEEECS
T ss_pred CCEEEECCCCH---HHHHHHHHHhccCCEEEEEe
Confidence 79999988742 23444445566666555443
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.24 Score=49.30 Aligned_cols=71 Identities=23% Similarity=0.170 Sum_probs=42.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH--cC-c--eecCCC-cCCHhhhhccCCeEEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AG-F--TEENGT-LGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~--~G-~--~~~d~~-~~~~~eav~~ADvViL 184 (462)
+||+||| .|.+|.+++..|.... +...++++.+.. .+....+.+ .. . .. ... ..+..+++++||+||+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~---~~~~el~L~Di~-~~~~G~a~Dl~~~~~~~~v-~~~~~~~~~~~~~~aDivii 75 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIA-PVTPGVAVDLSHIPTAVKI-KGFSGEDATPALEGADVVLI 75 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTEEEEEECSS-TTHHHHHHHHHTSCSSEEE-EEECSSCCHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CCCceEEEEecC-CCchhHHHHhhCCCCCceE-EEecCCCcHHHhCCCCEEEE
Confidence 6899999 8999999999987530 012355444443 222222222 11 1 11 000 0245678999999999
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+..
T Consensus 76 ~ag 78 (312)
T 3hhp_A 76 SAG 78 (312)
T ss_dssp CCS
T ss_pred eCC
Confidence 873
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.21 Score=47.92 Aligned_cols=81 Identities=20% Similarity=0.148 Sum_probs=53.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH---HHHcCceecCCCcCC---HhhhhccCCeEEE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE---ARAAGFTEENGTLGD---IYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~---A~~~G~~~~d~~~~~---~~eav~~ADvViL 184 (462)
++|.|+|. |.+|.++++.|.+. |++|++..|+.+...+. ....|+........+ +.++++++|+||.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL------GHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHC------CCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 58999995 99999999999998 88888777764322221 123455321111233 4567889999999
Q ss_pred eecch---hHHHHHHHH
Q 012479 185 LISDA---AQADNYEKI 198 (462)
Q Consensus 185 avpd~---a~~~vl~eI 198 (462)
+.... .+..+++..
T Consensus 86 ~a~~~~~~~~~~l~~aa 102 (318)
T 2r6j_A 86 ALAFPQILDQFKILEAI 102 (318)
T ss_dssp CCCGGGSTTHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHH
Confidence 98753 334455443
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.092 Score=53.04 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=61.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCH-hhhhc------cCC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETIS------GSD 180 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~eav~------~AD 180 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++..+ +.+..+.+++.|....+-...+. .+.++ ..|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~-~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 185 PG-SHVYIAGAGPVGRCAAAGARLL------GAACVIVGDQ-NPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEES-CHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-CHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCC
Confidence 56 8999999999999999999888 87 6655444 45557888888874211111222 23222 579
Q ss_pred eEEEeecchh-----------HHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAA-----------QADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a-----------~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+||-++.... -...+++....++++-.++..
T Consensus 257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 9999987542 112455555667776655544
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.28 Score=49.04 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=61.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCC--cCCHhhhhc-----cC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT--LGDIYETIS-----GS 179 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~--~~~~~eav~-----~A 179 (462)
+| .+|.|+|.|.+|...++-++.. |. +|++ .+.+++..+.+++.|.... +.. ..+..+.++ ..
T Consensus 193 ~g-~~VlV~GaG~vG~~a~q~a~~~------Ga~~Vi~-~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 193 PG-SNVAIFGLGTVGLAVAEGAKTA------GASRIIG-IDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHH------TCSCEEE-ECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-EcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 46 8999999999999999999988 88 5654 4444556788999887420 100 122333332 47
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC-cEEEEec
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~g-aiL~~a~ 212 (462)
|+||-++... +.++.....+++| -.++..+
T Consensus 265 D~vid~~g~~---~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 265 DYSFECIGNV---SVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCCH---HHHHHHHHHhhccCCEEEEEc
Confidence 9999988853 3345555677774 5554443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.14 Score=50.60 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=61.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCcee-cCCCcCCHhhhhc------cCC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETIS------GSD 180 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~-~d~~~~~~~eav~------~AD 180 (462)
+| ++|.|+|.|.+|.+.++-++.. |. +|++..++ ++..+.+++.|... .+....+..+.+. ..|
T Consensus 167 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 167 SG-KSVLITGAGPLGLLGIAVAKAS------GAYPVIVSEPS-DFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEECSC-HHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCC-HHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence 78 9999999999999999999988 88 77655544 55577788888631 0111123333332 579
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||-++... +.+++..+.++++-.++..+
T Consensus 239 ~vid~~g~~---~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 239 VFLEFSGAP---KALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp EEEECSCCH---HHHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCCH---HHHHHHHHHHhcCCEEEEEc
Confidence 999998752 23444455566665555443
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.2 Score=50.36 Aligned_cols=69 Identities=14% Similarity=0.205 Sum_probs=50.3
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHH----HHHcC--ceecCCCcCCHhhh
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAG--FTEENGTLGDIYET 175 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~----A~~~G--~~~~d~~~~~~~ea 175 (462)
.|+| .||++||= +++..|++..+..- |.++.+.... +....+. +++.| +.. +.+++|+
T Consensus 154 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~----~~d~~ea 222 (323)
T 3gd5_A 154 RLAG-LKLAYVGDGNNVAHSLLLGCAKV------GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQI----LRDPFEA 222 (323)
T ss_dssp CCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHHH
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEE----ECCHHHH
Confidence 4788 99999995 68999999999877 8888776443 2222333 33446 333 5789999
Q ss_pred hccCCeEEEee
Q 012479 176 ISGSDLVLLLI 186 (462)
Q Consensus 176 v~~ADvViLav 186 (462)
+++||+|+..+
T Consensus 223 v~~aDvvyt~~ 233 (323)
T 3gd5_A 223 ARGAHILYTDV 233 (323)
T ss_dssp HTTCSEEEECC
T ss_pred hcCCCEEEEec
Confidence 99999998775
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.12 Score=51.67 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=54.3
Q ss_pred cccCCCCEEEEEccc---chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcCceecCCCcCCHhhhhcc
Q 012479 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISG 178 (462)
Q Consensus 106 ~~l~gikkIgIIG~G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~eav~~ 178 (462)
..|+| .||++||=| ++.+|++..+..- |.++.+.... +....+.+++.|.... .+.+++|++++
T Consensus 151 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~ 221 (308)
T 1ml4_A 151 GRIDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGK 221 (308)
T ss_dssp SCSSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTT
T ss_pred CCCCC-eEEEEeCCCCcCchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHhcC
Confidence 35788 899999974 8999999999887 9888776543 2234466667775310 14689999999
Q ss_pred CCeEEEeec
Q 012479 179 SDLVLLLIS 187 (462)
Q Consensus 179 ADvViLavp 187 (462)
||+|+...=
T Consensus 222 aDvvyt~~~ 230 (308)
T 1ml4_A 222 LDVLYVTRI 230 (308)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCc
Confidence 999998663
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.2 Score=52.41 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=48.9
Q ss_pred CCCCEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 109 NGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+.+++|.|||+|-.|.+ +|+-|++. |.+|.+.+...+...+..++.|+....+ .+. +.++++|+||+.
T Consensus 17 ~~~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~-~~~~~a~~vv~s 85 (491)
T 2f00_A 17 RRVRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNPVTQQLMNLGATIYFN--HRP-ENVRDASVVVVS 85 (491)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEESS--CCG-GGGTTCSEEEEC
T ss_pred ccCCEEEEEEcCHHHHHHHHHHHHhC------CCeEEEECCCCCHHHHHHHHCCCEEECC--CCH-HHcCCCCEEEEC
Confidence 34589999999999997 99999998 9998877665444344555678765211 122 456789998884
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=93.39 E-value=0.23 Score=50.04 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=55.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC--CchhHHHHH----HcC-----cee--cCC---------C-
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR----AAG-----FTE--ENG---------T- 168 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~--~~~s~~~A~----~~G-----~~~--~d~---------~- 168 (462)
.||||+|+|.+|.-+++.|.+. .+++++...+. +........ ..| ... .++ .
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~-----p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v 78 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS-----EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTV 78 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEE
Confidence 4899999999999999998765 14566554442 222222221 112 110 000 0
Q ss_pred c--CCHhhh---hccCCeEEEeecchhHHHHHHHHHhcCCCCc--EEEEecc
Q 012479 169 L--GDIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (462)
Q Consensus 169 ~--~~~~ea---v~~ADvViLavpd~a~~~vl~eI~~~Lk~ga--iL~~a~G 213 (462)
. .+++++ -.++|+||.|+|.....+....+ ++.|. +|+..++
T Consensus 79 ~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~---l~aGak~VVIs~pa 127 (337)
T 3e5r_O 79 FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAH---LKGGAKKVVISAPS 127 (337)
T ss_dssp ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHH---HHTTCSEEEESSCC
T ss_pred EecCChHHccccccCCCEEEECCCchhhHHHHHHH---HHcCCCEEEEecCC
Confidence 1 144443 14799999999999888776654 34565 5554443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.33 E-value=0.16 Score=50.60 Aligned_cols=93 Identities=12% Similarity=0.102 Sum_probs=59.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc-----cCCe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~-----~ADv 181 (462)
.| ++|.|+|.|.+|...++-++.. |. .|++ .+.+++..+.+++.|.... +....+..+.+. ..|+
T Consensus 190 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~~Vi~-~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~ 261 (371)
T 1f8f_A 190 PA-SSFVTWGAGAVGLSALLAAKVC------GASIIIA-VDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 261 (371)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEE-EESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEE-ECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcE
Confidence 46 8999999999999999998888 87 4544 4444556788888886310 111123333332 4799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
||-++... +.+++....++++-.++..+
T Consensus 262 vid~~g~~---~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 262 ALESTGSP---EILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EEECSCCH---HHHHHHHHTEEEEEEEEECC
T ss_pred EEECCCCH---HHHHHHHHHHhcCCEEEEeC
Confidence 99888742 23445555666665555443
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.17 Score=50.50 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..+|.-|... +-.|.+.... +.++.+.+++||+||.
T Consensus 175 i~l~G-k~vvViGRS~iVGkPla~LL~~~------~ATVTi~Hs~-------------------T~dl~~~~~~ADIvV~ 228 (303)
T 4b4u_A 175 IEIAG-KHAVVVGRSAILGKPMAMMLLQA------NATVTICHSR-------------------TQNLPELVKQADIIVG 228 (303)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEEeccccccchHHHHHHhc------CCEEEEecCC-------------------CCCHHHHhhcCCeEEe
Confidence 46889 999999966 6799999999887 7777765321 3467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ...+|+|++|+|++
T Consensus 229 A~G~p~~---i~--~d~vk~GavVIDVG 251 (303)
T 4b4u_A 229 AVGKAEL---IQ--KDWIKQGAVVVDAG 251 (303)
T ss_dssp CSCSTTC---BC--GGGSCTTCEEEECC
T ss_pred ccCCCCc---cc--cccccCCCEEEEec
Confidence 9874322 22 35689999999874
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.42 Score=48.32 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=42.7
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCC--cEEEEEecCCchh--HHHHHH--c-Cce--ecCCCcCCHhh
Q 012479 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRS--FAEARA--A-GFT--EENGTLGDIYE 174 (462)
Q Consensus 105 ~~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G--~~Vivg~r~~~~s--~~~A~~--~-G~~--~~d~~~~~~~e 174 (462)
+..... -||+|||. |.+|.+++..|.... =.|.+ .++...+...... .-.+.+ + .+. ..-....+..+
T Consensus 19 ~~s~~~-vKVaViGAaG~IG~~la~~la~~~-l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~ 96 (345)
T 4h7p_A 19 PGSMSA-VKVAVTGAAGQIGYALVPLIARGA-LLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRV 96 (345)
T ss_dssp ---CCC-EEEEEESTTSHHHHHHHHHHHHTT-TTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHH
T ss_pred CCCCCC-CEEEEECcCcHHHHHHHHHHHhcc-ccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHH
Confidence 445555 69999996 999999999988750 00001 1444433322111 111111 1 110 00001356788
Q ss_pred hhccCCeEEEee
Q 012479 175 TISGSDLVLLLI 186 (462)
Q Consensus 175 av~~ADvViLav 186 (462)
++++||+||++-
T Consensus 97 a~~~advVvi~a 108 (345)
T 4h7p_A 97 AFDGVAIAIMCG 108 (345)
T ss_dssp HTTTCSEEEECC
T ss_pred HhCCCCEEEECC
Confidence 999999999965
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.25 Score=46.83 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=52.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC-c-----hhHHH---HHHcCceecCCCcCC---Hhhhhcc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S-----RSFAE---ARAAGFTEENGTLGD---IYETISG 178 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~-----~s~~~---A~~~G~~~~d~~~~~---~~eav~~ 178 (462)
++|.|+|. |.+|.++++.|.+. |++|++..|.. . ...+. ....|+......+.+ ..+++++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 76 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKA------GNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQ 76 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHH------TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred cEEEEECCCchHHHHHHHHHHhC------CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhC
Confidence 88999996 99999999999998 88888777764 1 11111 123455321111233 4567889
Q ss_pred CCeEEEeecch---hHHHHHHHH
Q 012479 179 SDLVLLLISDA---AQADNYEKI 198 (462)
Q Consensus 179 ADvViLavpd~---a~~~vl~eI 198 (462)
+|+||.+.... .+..+++..
T Consensus 77 ~d~vi~~a~~~~~~~~~~l~~aa 99 (307)
T 2gas_A 77 VDIVICAAGRLLIEDQVKIIKAI 99 (307)
T ss_dssp CSEEEECSSSSCGGGHHHHHHHH
T ss_pred CCEEEECCcccccccHHHHHHHH
Confidence 99999988743 334455543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.23 E-value=0.17 Score=50.97 Aligned_cols=97 Identities=22% Similarity=0.233 Sum_probs=61.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC-Hhhhh------ccCCe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETI------SGSDL 181 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~-~~eav------~~ADv 181 (462)
.| .+|.|+|.|.+|...++-++.. |...++..+.+++..+.+++.|....+-...+ ..+.+ ...|+
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlAk~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dv 257 (398)
T 1kol_A 185 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC 257 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCE
Confidence 56 8999999999999999998888 87333444444566788888887421111111 23322 24799
Q ss_pred EEEeecchh------------HHHHHHHHHhcCCCCcEEEEec
Q 012479 182 VLLLISDAA------------QADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 182 ViLavpd~a------------~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
||-++.... ....+++....++++-.++..+
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 258 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 999987542 1124555556666665555443
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.43 Score=47.11 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=60.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCc-CCH-hh---hh-----c
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDI-YE---TI-----S 177 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~-~~~-~e---av-----~ 177 (462)
.| ++|.|+|.|.+|...++-++.. |.+|++ .+.+++..+.+++.|.... +... .+. ++ .. .
T Consensus 168 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~-~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 168 LG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVC-TARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEE-EESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEE-EcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCC
Confidence 57 8999999999999999999888 888654 4444556778888886310 1110 121 11 22 2
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
..|+||-++.... .++.....++++-.++..
T Consensus 240 g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 240 LPNVTIDCSGNEK---CITIGINITRTGGTLMLV 270 (352)
T ss_dssp CCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCCEEEECCCCHH---HHHHHHHHHhcCCEEEEE
Confidence 5899999987542 344455567776665544
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.15 E-value=0.19 Score=45.12 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=59.0
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav------~~AD 180 (462)
+| ++|.|+| .|.+|.+.++.++.. |.+|++..++ .+..+.+++.|.... |....+..+.+ ...|
T Consensus 38 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 38 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGS-DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEeeCCChHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence 46 8999999 699999999999988 8887666554 444556666664210 11111222222 1478
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+||.++.. +.++...+.|+++-.++..+.
T Consensus 110 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 110 VVLNSLAG----EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEEECCCT----HHHHHHHHTEEEEEEEEECSC
T ss_pred EEEECCch----HHHHHHHHHhccCCEEEEEcC
Confidence 99988764 345556666777666555543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.21 Score=49.05 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=60.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc----cCCeEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDLVL 183 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~----~ADvVi 183 (462)
.| .+|.|+|.|.+|...++-++.. |.+|++..+ +++..+.+++.|.... |....+..+.+. ..|+|+
T Consensus 166 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vi 237 (340)
T 3s2e_A 166 PG-QWVVISGIGGLGHVAVQYARAM------GLRVAAVDI-DDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVL 237 (340)
T ss_dssp TT-SEEEEECCSTTHHHHHHHHHHT------TCEEEEEES-CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeC-CHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEE
Confidence 56 8999999999999999999988 888765544 4556788888886320 111123333333 578998
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
.++... +.++.....++++-.++..
T Consensus 238 d~~g~~---~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 238 VTAVSP---KAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred EeCCCH---HHHHHHHHHhccCCEEEEe
Confidence 887632 3444555566666655544
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.16 Score=53.78 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=53.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC-Hh-hhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IY-ETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~-~~-eav~~ADvViLavpd~ 189 (462)
++|.|||+|..|..+|+.|.+. |+++++-+....+ .+.+. -+...|.+-.+ .+ .-+++||.++++++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~d~~~-~~~~~--~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRK------PVPFILIDRQESP-VCNDH--VVVYGDATVGQTLRQAGIDRASGIIVTTNDD 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSCCS-SCCSS--CEEESCSSSSTHHHHHTTTSCSEEEECCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECChHH-HhhcC--CEEEeCCCCHHHHHhcCccccCEEEEECCCc
Confidence 6799999999999999999998 9888776654333 22221 23322222111 22 2378999999999987
Q ss_pred hHHHHHHHHHhcCCCC
Q 012479 190 AQADNYEKIFSCMKPN 205 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~g 205 (462)
..--+.-.++..+.+.
T Consensus 420 ~~ni~~~~~ak~l~~~ 435 (565)
T 4gx0_A 420 STNIFLTLACRHLHSH 435 (565)
T ss_dssp HHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHCCC
Confidence 4433333344444444
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=92.97 E-value=0.38 Score=47.66 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=59.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCC---cCCHhhhh-----cc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI-----SG 178 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~---~~~~~eav-----~~ 178 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++.. .+++..+.+++.|.... +.. ..+..+.+ ..
T Consensus 171 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~-~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 171 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTD-LSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEE-SCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEC-CCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCC
Confidence 57 8999999999999999998887 88 665544 44555788888886310 100 00111122 35
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
.|+||-++... ..++.....++++-.++..
T Consensus 243 ~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 243 PEVTIECTGAE---ASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp CSEEEECSCCH---HHHHHHHHHSCTTCEEEEC
T ss_pred CCEEEECCCCh---HHHHHHHHHhcCCCEEEEE
Confidence 89999998753 2344445567777665544
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.15 Score=51.88 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=55.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecC--CchhHHHHH---HcCceecCCCcCCHhhhhccCCeEEE
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~--~~~s~~~A~---~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
|.||+||| .|..|.-+.+-|.+. + .+++...... ..+.....- ....... ..+.++...++|+||+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-P----~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~---~~~~~~~~~~~Dvvf~ 84 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKLEEIFPSTLENSILS---EFDPEKVSKNCDVLFT 84 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBHHHHCGGGCCCCBCB---CCCHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-C----CcEEEEEeCcccccCChHHhChhhccCceEE---eCCHHHhhcCCCEEEE
Confidence 47899998 699999999988876 1 2344332221 122222110 0112210 1244555578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|+|.....++.+++ .|..|+|.++
T Consensus 85 alp~~~s~~~~~~~-----~g~~VIDlSs 108 (351)
T 1vkn_A 85 ALPAGASYDLVREL-----KGVKIIDLGA 108 (351)
T ss_dssp CCSTTHHHHHHTTC-----CSCEEEESSS
T ss_pred CCCcHHHHHHHHHh-----CCCEEEECCh
Confidence 99998777665543 6888888877
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.3 Score=46.83 Aligned_cols=81 Identities=17% Similarity=0.135 Sum_probs=52.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC-c----hhHHH---HHHcCceecCCCcCC---HhhhhccC
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S----RSFAE---ARAAGFTEENGTLGD---IYETISGS 179 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~----~s~~~---A~~~G~~~~d~~~~~---~~eav~~A 179 (462)
|+|.|+|. |.+|.++++.|.+. |++|++..|.. + ...+. ....|+......+.+ +.++++++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~ 78 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSF------SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQV 78 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred cEEEEEcCCchhHHHHHHHHHhC------CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCC
Confidence 78999995 99999999999998 88888777764 1 11111 123454321111233 45678899
Q ss_pred CeEEEeecch---hHHHHHHHH
Q 012479 180 DLVLLLISDA---AQADNYEKI 198 (462)
Q Consensus 180 DvViLavpd~---a~~~vl~eI 198 (462)
|+||.+.... .+..+++..
T Consensus 79 d~vi~~a~~~~~~~~~~l~~aa 100 (321)
T 3c1o_A 79 DIVISALPFPMISSQIHIINAI 100 (321)
T ss_dssp SEEEECCCGGGSGGGHHHHHHH
T ss_pred CEEEECCCccchhhHHHHHHHH
Confidence 9999988743 344555543
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.26 Score=48.10 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=53.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH------HHHcCceecCCCcCC---Hhhhhc--cC
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE------ARAAGFTEENGTLGD---IYETIS--GS 179 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~------A~~~G~~~~d~~~~~---~~eav~--~A 179 (462)
++|.|+|. |.+|.+++..|.+. |++|++..|..+...+. ....|+........+ ..++++ ++
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 84 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDA------HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEI 84 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC------CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCC
Confidence 78999997 99999999999998 88888877764221111 123455322112333 445778 99
Q ss_pred CeEEEeecch---hHHHHHHHHH
Q 012479 180 DLVLLLISDA---AQADNYEKIF 199 (462)
Q Consensus 180 DvViLavpd~---a~~~vl~eI~ 199 (462)
|+||.+.... .+..+++...
T Consensus 85 d~Vi~~a~~~n~~~~~~l~~aa~ 107 (346)
T 3i6i_A 85 DIVVSTVGGESILDQIALVKAMK 107 (346)
T ss_dssp CEEEECCCGGGGGGHHHHHHHHH
T ss_pred CEEEECCchhhHHHHHHHHHHHH
Confidence 9999998763 2334555433
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.25 Score=50.60 Aligned_cols=70 Identities=13% Similarity=0.014 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecC------CchhHH----HHHHcCceecCCCcCCHhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK------GSRSFA----EARAAGFTEENGTLGDIYE 174 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~------~~~s~~----~A~~~G~~~~d~~~~~~~e 174 (462)
.|+| .||++||=+ +++.|++..+..- |.++.+.... ++...+ .+++.|.... .+.+++|
T Consensus 177 ~l~g-lkva~vGD~~nnva~Sl~~~~~~l------G~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~--~~~d~~e 247 (365)
T 4amu_A 177 NLKN-KKIVFIGDYKNNVGVSTMIGAAFN------GMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLR--FSTDKIL 247 (365)
T ss_dssp SCTT-CEEEEESSTTSHHHHHHHHHHHHT------TCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEE--EESCHHH
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHHc------CCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEE--EECCHHH
Confidence 3789 999999987 7889999998877 8888776433 122222 2445563210 1578999
Q ss_pred hhccCCeEEEe
Q 012479 175 TISGSDLVLLL 185 (462)
Q Consensus 175 av~~ADvViLa 185 (462)
++++||+|+.-
T Consensus 248 av~~aDVVytd 258 (365)
T 4amu_A 248 AAQDADVIYTD 258 (365)
T ss_dssp HTTTCSEEEEC
T ss_pred HhcCCCEEEec
Confidence 99999999984
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.24 Score=48.94 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=60.4
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh------ccCCe
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav------~~ADv 181 (462)
.| ++|.|+| .|.+|.+.++-++.. |.+|++. ++ .+..+.+++.|....+ ...+..+.+ ...|+
T Consensus 150 ~g-~~VlV~Ga~g~iG~~~~q~a~~~------Ga~Vi~~-~~-~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 150 DG-QTVLIQGGGGGVGHVAIQIALAR------GARVFAT-AR-GSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEE-EC-HHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEE-eC-HHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceE
Confidence 56 8999999 799999999999988 8887665 44 4457788888875322 122333332 25789
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
||-++... .+......++++-.++..++
T Consensus 220 vid~~g~~----~~~~~~~~l~~~G~iv~~g~ 247 (343)
T 3gaz_A 220 VYDTLGGP----VLDASFSAVKRFGHVVSCLG 247 (343)
T ss_dssp EEESSCTH----HHHHHHHHEEEEEEEEESCC
T ss_pred EEECCCcH----HHHHHHHHHhcCCeEEEEcc
Confidence 98888753 34444455666555554443
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.27 Score=49.51 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=49.7
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCCc------hhHHHHH----H--cCc--eecCCCcC
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS------RSFAEAR----A--AGF--TEENGTLG 170 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~------~s~~~A~----~--~G~--~~~d~~~~ 170 (462)
.|+| .||++||=+ ++.+|++..+..- |.++.+.....- ...+.++ + .|. .. +.
T Consensus 158 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~----~~ 226 (328)
T 3grf_A 158 GFKG-IKFAYCGDSMNNVTYDLMRGCALL------GMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKI----FH 226 (328)
T ss_dssp TGGG-CCEEEESCCSSHHHHHHHHHHHHH------TCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEE----ES
T ss_pred ccCC-cEEEEeCCCCcchHHHHHHHHHHc------CCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEE----Ec
Confidence 6889 999999976 8899999999887 888877644321 1223333 3 463 32 57
Q ss_pred CHhhhhccCCeEEEe
Q 012479 171 DIYETISGSDLVLLL 185 (462)
Q Consensus 171 ~~~eav~~ADvViLa 185 (462)
+++|++++||+|+.-
T Consensus 227 d~~eav~~aDvvytd 241 (328)
T 3grf_A 227 DCKKGCEGVDVVYTD 241 (328)
T ss_dssp SHHHHHTTCSEEEEC
T ss_pred CHHHHhcCCCEEEec
Confidence 899999999999863
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.12 Score=51.21 Aligned_cols=70 Identities=13% Similarity=-0.013 Sum_probs=52.1
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
.|+| .||++||= +++.+|++..+..- |.++.+...+.-.-.. ..+.|+.. +.+++|++++||+|+
T Consensus 143 ~l~g-l~va~vGDl~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~p~~-~~~~g~~~----~~d~~eav~~aDvvy 210 (291)
T 3d6n_B 143 EVKD-LRVLYVGDIKHSRVFRSGAPLLNMF------GAKIGVCGPKTLIPRD-VEVFKVDV----FDDVDKGIDWADVVI 210 (291)
T ss_dssp CCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSCTT-GGGGCEEE----ESSHHHHHHHCSEEE
T ss_pred CcCC-cEEEEECCCCCCchHHHHHHHHHHC------CCEEEEECCchhCCch-HHHCCCEE----EcCHHHHhCCCCEEE
Confidence 4789 99999997 89999999999988 9888776543210001 12457654 678999999999999
Q ss_pred Eeecch
Q 012479 184 LLISDA 189 (462)
Q Consensus 184 Lavpd~ 189 (462)
. +-.+
T Consensus 211 ~-~~~q 215 (291)
T 3d6n_B 211 W-LRLQ 215 (291)
T ss_dssp E-CCCC
T ss_pred E-eCcc
Confidence 8 6543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=0.55 Score=46.65 Aligned_cols=92 Identities=12% Similarity=0.020 Sum_probs=59.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----Cc---eecCCCcCCHhhh-hcc
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF---TEENGTLGDIYET-ISG 178 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~---~~~d~~~~~~~ea-v~~ 178 (462)
.-.| ++|..||+|..|.+...-.+.. |.+| ++.+.++...+.|++. |. ... ..+..+. -..
T Consensus 120 l~~g-~rVLDIGcG~G~~ta~~lA~~~------ga~V-~gIDis~~~l~~Ar~~~~~~gl~~v~~v---~gDa~~l~d~~ 188 (298)
T 3fpf_A 120 FRRG-ERAVFIGGGPLPLTGILLSHVY------GMRV-NVVEIEPDIAELSRKVIEGLGVDGVNVI---TGDETVIDGLE 188 (298)
T ss_dssp CCTT-CEEEEECCCSSCHHHHHHHHTT------CCEE-EEEESSHHHHHHHHHHHHHHTCCSEEEE---ESCGGGGGGCC
T ss_pred CCCc-CEEEEECCCccHHHHHHHHHcc------CCEE-EEEECCHHHHHHHHHHHHhcCCCCeEEE---ECchhhCCCCC
Confidence 3456 8999999998765433222223 5564 5777777667666653 43 110 2233332 145
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
.|+|++..-.....++++++...||||-.|.
T Consensus 189 FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 189 FDVLMVAALAEPKRRVFRNIHRYVDTETRII 219 (298)
T ss_dssp CSEEEECTTCSCHHHHHHHHHHHCCTTCEEE
T ss_pred cCEEEECCCccCHHHHHHHHHHHcCCCcEEE
Confidence 7999987655555689999999999998654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.13 Score=51.32 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=59.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc------cCCe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSDL 181 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~------~ADv 181 (462)
.| ++|.|+|.|.+|.+.++-++.. |.+|++..+. .+..+.+++.|.... |....+..+.+. ..|+
T Consensus 189 ~g-~~VlV~G~G~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~ 260 (363)
T 3uog_A 189 AG-DRVVVQGTGGVALFGLQIAKAT------GAEVIVTSSS-REKLDRAFALGADHGINRLEEDWVERVYALTGDRGADH 260 (363)
T ss_dssp TT-CEEEEESSBHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEecC-chhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceE
Confidence 46 8999999999999999999988 8887665544 455777888886320 111123333221 5789
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
||-++...... .....++++-.++..+
T Consensus 261 vid~~g~~~~~----~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 261 ILEIAGGAGLG----QSLKAVAPDGRISVIG 287 (363)
T ss_dssp EEEETTSSCHH----HHHHHEEEEEEEEEEC
T ss_pred EEECCChHHHH----HHHHHhhcCCEEEEEe
Confidence 99888854433 3334555655555443
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.33 Score=48.03 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=30.4
Q ss_pred cccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEec
Q 012479 98 RDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (462)
Q Consensus 98 ~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r 148 (462)
+|.+....+.|++ .+|.|||+|-.|..++++|..+ |+ ++.+.++
T Consensus 24 ~~G~~~~q~kL~~-~~VlVvGaGGlGs~va~~La~a------GVG~i~lvD~ 68 (292)
T 3h8v_A 24 RMGIVSDYEKIRT-FAVAIVGVGGVGSVTAEMLTRC------GIGKLLLFDY 68 (292)
T ss_dssp --------CGGGG-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECC
T ss_pred ccChHHHHHHHhC-CeEEEECcCHHHHHHHHHHHHc------CCCEEEEECC
Confidence 3555333467888 9999999999999999999998 76 5555443
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.33 Score=49.34 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=55.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEe-c-CCchhHHHH-------------HHcCceecCCCcCCHhhh
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-R-KGSRSFAEA-------------RAAGFTEENGTLGDIYET 175 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~-r-~~~~s~~~A-------------~~~G~~~~d~~~~~~~ea 175 (462)
.|||||| .|..|.-+.+-|.+. + .+++.... + ...+..... .+.-+. ..+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P----~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-----~~~~-~~ 76 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNH-P----YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-----PTDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-S----SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-----ECCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-C----CceEEEEECchhcCCChhHhcccccccccccccccceEE-----eCCH-HH
Confidence 5899999 699999999977654 1 23443222 2 212223221 111111 1122 34
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 176 v~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++++|+||+|+|.....++.+.+. +.|..++|.++-
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~ 112 (359)
T 4dpk_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSPD 112 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSST
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCCC
Confidence 579999999999998888777654 468878777663
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.33 Score=49.34 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=55.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEe-c-CCchhHHHH-------------HHcCceecCCCcCCHhhh
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-R-KGSRSFAEA-------------RAAGFTEENGTLGDIYET 175 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~-r-~~~~s~~~A-------------~~~G~~~~d~~~~~~~ea 175 (462)
.|||||| .|..|.-+.+-|.+. + .+++.... + ...+..... .+.-+. ..+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P----~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-----~~~~-~~ 76 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNH-P----YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-----PTDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-S----SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-----ECCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-C----CceEEEEECchhcCCChhHhcccccccccccccccceEE-----eCCH-HH
Confidence 5899999 699999999977654 1 23443222 2 212223221 111111 1122 34
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 176 v~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++++|+||+|+|.....++.+.+. +.|..++|.++-
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~ 112 (359)
T 4dpl_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSPD 112 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSST
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCCC
Confidence 579999999999998888777654 468878777663
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.42 Score=49.76 Aligned_cols=95 Identities=12% Similarity=0.181 Sum_probs=64.3
Q ss_pred cccCCCCEEEEEccc----------chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC--ceecCCCcCCHh
Q 012479 106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIY 173 (462)
Q Consensus 106 ~~l~gikkIgIIG~G----------~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G--~~~~d~~~~~~~ 173 (462)
..++| +||+|.|+- +-...++..|.+. |.+|.+.+..-.. +.....| +.. +.+..
T Consensus 314 ~~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~--~~~~~~~~~~~~----~~~~~ 380 (450)
T 3gg2_A 314 GNVQG-RCVAIWGLSFKPGTDDMREAPSLVLIEKLLEV------GCRVRVYDPVAMK--EAQKRLGDKVEY----TTDMY 380 (450)
T ss_dssp TCCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSCHH--HHHHHHGGGSEE----CSSHH
T ss_pred ccCCC-CEEEEEeeeeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCCcH--HHHHhcCcccee----cCCHH
Confidence 34688 999999974 4467788888888 9888776543221 1112233 442 46788
Q ss_pred hhhccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEEeccc
Q 012479 174 ETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 174 eav~~ADvViLavpd~a~~~-vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+++++||+|+++|.-....+ -++.+...|+ +.+|.|.-++
T Consensus 381 ~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~-~~~i~D~r~~ 421 (450)
T 3gg2_A 381 DAVRGAEALFHVTEWKEFRMPDWSALSQAMA-ASLVIDGRNV 421 (450)
T ss_dssp HHTTTCSCEEECSCCGGGSSCCHHHHHHHSS-SCEEEESSCC
T ss_pred HHhcCCCEEEEccCCHHHhhcCHHHHHHhcC-CCEEEECCCC
Confidence 99999999999998666543 2455666665 4577776554
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.45 Score=46.11 Aligned_cols=75 Identities=19% Similarity=0.120 Sum_probs=49.9
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHH---HH-------cCceecCCCcCC---
Q 012479 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---RA-------AGFTEENGTLGD--- 171 (462)
Q Consensus 106 ~~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A---~~-------~G~~~~d~~~~~--- 171 (462)
..+++ |+|.|.| .|.+|.++++.|.+. |++|++..|......... .. .++........+
T Consensus 21 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 93 (351)
T 3ruf_A 21 LIFSP-KTWLITGVAGFIGSNLLEKLLKL------NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93 (351)
T ss_dssp HHHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHH
T ss_pred CCCCC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHH
Confidence 34567 9999999 599999999999998 999887777543322222 11 233211111223
Q ss_pred HhhhhccCCeEEEeec
Q 012479 172 IYETISGSDLVLLLIS 187 (462)
Q Consensus 172 ~~eav~~ADvViLavp 187 (462)
..++++++|+||.+..
T Consensus 94 ~~~~~~~~d~Vih~A~ 109 (351)
T 3ruf_A 94 CEQVMKGVDHVLHQAA 109 (351)
T ss_dssp HHHHTTTCSEEEECCC
T ss_pred HHHHhcCCCEEEECCc
Confidence 3467789999998875
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.15 Score=46.28 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=47.5
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---HhhhhccCCeEEEee
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvViLav 186 (462)
||+|.|+| .|.+|.++++.|.+. |++|++..|..++..... .++......+.+ ..++++++|+||.+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR------GFEVTAVVRHPEKIKIEN--EHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT------TCEEEEECSCGGGCCCCC--TTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEEcCcccchhcc--CceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 48999999 599999999999998 998887777644321110 222211111223 446788999999987
Q ss_pred cch
Q 012479 187 SDA 189 (462)
Q Consensus 187 pd~ 189 (462)
.+.
T Consensus 76 ~~~ 78 (227)
T 3dhn_A 76 NPG 78 (227)
T ss_dssp CC-
T ss_pred cCC
Confidence 654
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.21 E-value=0.33 Score=46.15 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=48.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch----hHHH---HHHcCceecCCCcCC---HhhhhccCC
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE---ARAAGFTEENGTLGD---IYETISGSD 180 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~----s~~~---A~~~G~~~~d~~~~~---~~eav~~AD 180 (462)
|+|.|+| .|.+|.+++..|.+. |++|++..|..+. ..+. ....|+........+ ..++++++|
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d 78 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 78 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC------CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCC
Confidence 7899999 599999999999998 8888777776321 1111 122454321111233 456788999
Q ss_pred eEEEeecch
Q 012479 181 LVLLLISDA 189 (462)
Q Consensus 181 vViLavpd~ 189 (462)
+||.+....
T Consensus 79 ~vi~~a~~~ 87 (313)
T 1qyd_A 79 VVISALAGG 87 (313)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999988643
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.56 Score=48.81 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=56.6
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHH-HHcCceecCCCcCCHhhhhccC
Q 012479 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEENGTLGDIYETISGS 179 (462)
Q Consensus 101 f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A-~~~G~~~~d~~~~~~~eav~~A 179 (462)
||.. -.++| ++|.|||.|..|.+-++.|.+. |.+|+|.........+.. .+.++....+ ..+ .+-+.++
T Consensus 4 ~P~~-~~l~~-~~vlVvGgG~va~~k~~~L~~~------ga~V~vi~~~~~~~~~~l~~~~~i~~~~~-~~~-~~~l~~~ 73 (457)
T 1pjq_A 4 LPIF-CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEG-PFD-ETLLDSC 73 (457)
T ss_dssp EEEE-ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEES-SCC-GGGGTTC
T ss_pred eeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEcCCCCHHHHHHHhcCCEEEEEC-CCC-ccccCCc
Confidence 3444 45789 9999999999999999999999 988877765433323222 2234432111 112 2346789
Q ss_pred CeEEEeecchhH-HHHHHH
Q 012479 180 DLVLLLISDAAQ-ADNYEK 197 (462)
Q Consensus 180 DvViLavpd~a~-~~vl~e 197 (462)
|+||.++.+... ..++..
T Consensus 74 ~lVi~at~~~~~n~~i~~~ 92 (457)
T 1pjq_A 74 WLAIAATDDDTVNQRVSDA 92 (457)
T ss_dssp SEEEECCSCHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHH
Confidence 999998887754 344444
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=92.10 E-value=0.52 Score=44.73 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=48.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhH-HHHHHcCceecCCCcCC---HhhhhccCCeEEEe
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~-~~A~~~G~~~~d~~~~~---~~eav~~ADvViLa 185 (462)
|+|.|+|. |.+|.++++.|.+. | ++|++..|...+.. +.....|+........+ ..++++++|+||.+
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLED------GTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------CSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCchHHHHHHHHHHhc------CCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 78999997 99999999999998 8 88887777644321 22223454321111233 44678899999998
Q ss_pred ecc
Q 012479 186 ISD 188 (462)
Q Consensus 186 vpd 188 (462)
...
T Consensus 80 a~~ 82 (299)
T 2wm3_A 80 TNY 82 (299)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=92.10 E-value=0.28 Score=48.99 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=47.6
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
.|+| .||++||=| ++..|++..+..- |.++.+.....-.. +. .+.|. ..+++|++++||+|+
T Consensus 144 ~l~g-lkva~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~-~~-~~~g~------~~d~~eav~~aDvvy 208 (304)
T 3r7f_A 144 TFKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSEWQD-EE-NTFGT------YVSMDEAVESSDVVM 208 (304)
T ss_dssp CCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSC-TT-CSSCE------ECCHHHHHHHCSEEE
T ss_pred CCCC-CEEEEEcCCCCcchHHHHHHHHHHc------CCEEEEECCCccCc-ch-hhcCc------cCCHHHHhCCCCEEE
Confidence 5789 999999975 6999999999888 98887765432111 11 12342 468999999999998
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
...
T Consensus 209 t~~ 211 (304)
T 3r7f_A 209 LLR 211 (304)
T ss_dssp ECC
T ss_pred ecc
Confidence 864
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=92.08 E-value=0.14 Score=49.42 Aligned_cols=90 Identities=21% Similarity=0.188 Sum_probs=58.9
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCc-CCHhhhhccCCeEEEe
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETISGSDLVLLL 185 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~-~~~~eav~~ADvViLa 185 (462)
.| ++|.|+|. |.+|...++-++.. |.+|++..++ ++..+.+++.|.... +... .+..+.++..|+||-
T Consensus 125 ~g-~~vlV~Ga~G~vG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid- 195 (302)
T 1iz0_A 125 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE- 195 (302)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-
Confidence 46 89999998 99999999999988 8887666554 444667777886320 0000 112233467899998
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+... .++.....++++-.++..
T Consensus 196 ~g~~----~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 196 VRGK----EVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp CSCT----THHHHHTTEEEEEEEEEC
T ss_pred CCHH----HHHHHHHhhccCCEEEEE
Confidence 7753 345555667666555444
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.06 E-value=0.45 Score=48.67 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=59.1
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH---------------
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI--------------- 172 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~--------------- 172 (462)
.| ++|.|+|. |.+|.+.++-++.. |.+|++..+. .+..+.+++.|... +.+.
T Consensus 220 ~g-~~VlV~GasG~iG~~a~qla~~~------Ga~vi~~~~~-~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~~~~~ 287 (447)
T 4a0s_A 220 QG-DIVLIWGASGGLGSYAIQFVKNG------GGIPVAVVSS-AQKEAAVRALGCDL----VINRAELGITDDIADDPRR 287 (447)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCC----EEEHHHHTCCTTGGGCHHH
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCE----EEecccccccccccccccc
Confidence 46 89999998 99999999999988 8887766654 55577888888642 1111
Q ss_pred --------hhhh-----ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 173 --------YETI-----SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 173 --------~eav-----~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
.+.+ ...|+||-++... .++.....++++-.++..+
T Consensus 288 ~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~----~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 288 VVETGRKLAKLVVEKAGREPDIVFEHTGRV----TFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSEEEECSCHH----HHHHHHHHSCTTCEEEESC
T ss_pred cchhhhHHHHHHHHHhCCCceEEEECCCch----HHHHHHHHHhcCCEEEEEe
Confidence 1111 2578888887753 3445555677766555443
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.22 Score=48.83 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav------~~AD 180 (462)
+| ++|.|+| .|.+|.+.++-++.. |.+|++..++ .+..+.+++.|.... +....+..+.+ ...|
T Consensus 148 ~g-~~vlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D 219 (334)
T 3qwb_A 148 KG-DYVLLFAAAGGVGLILNQLLKMK------GAHTIAVAST-DEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVD 219 (334)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCce
Confidence 56 8999999 899999999999988 8887766554 455678888886320 11112333322 2479
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+|+-++... .++.....++++-.++..+
T Consensus 220 ~vid~~g~~----~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 220 ASFDSVGKD----TFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EEEECCGGG----GHHHHHHHEEEEEEEEECC
T ss_pred EEEECCChH----HHHHHHHHhccCCEEEEEc
Confidence 999998864 3444455666766655544
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=92.04 E-value=0.17 Score=50.09 Aligned_cols=93 Identities=25% Similarity=0.291 Sum_probs=59.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc------cCC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~------~AD 180 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++ .+.+++..+.+++.|.... +....+..+.+. ..|
T Consensus 166 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi~-~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 166 LG-DTVCVIGIGPVGLMSVAGANHL------GAGRIFA-VGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHTT------TCSSEEE-ECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEE-ECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCC
Confidence 46 8999999999999999999888 87 5655 4555556788898887420 111122323221 479
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||-++.... .+++....++++-.++..+
T Consensus 238 ~v~d~~g~~~---~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 238 KVVIAGGDVH---TFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp EEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCChH---HHHHHHHHHhcCCEEEEec
Confidence 9998887632 2334444556665555443
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.38 Score=48.95 Aligned_cols=68 Identities=15% Similarity=0.073 Sum_probs=48.8
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHc--------CceecCCCcCCHhh
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAA--------GFTEENGTLGDIYE 174 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~--------G~~~~d~~~~~~~e 174 (462)
|+| .||++||=+ ++.+|++..+..- |.++.+.... ++...+.+++. ++.. +.+++|
T Consensus 186 l~g-lkva~vGD~~nva~Sl~~~l~~l------G~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~----~~d~~e 254 (353)
T 3sds_A 186 LEG-LKIAWVGDANNVLFDLAIAATKM------GVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ----TTVPEV 254 (353)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEE----ESCHHH
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEE----ECCHHH
Confidence 589 999999966 7888888888877 8888776443 22333444432 2333 578999
Q ss_pred hhccCCeEEEee
Q 012479 175 TISGSDLVLLLI 186 (462)
Q Consensus 175 av~~ADvViLav 186 (462)
++++||+|+.-+
T Consensus 255 av~~aDVvytd~ 266 (353)
T 3sds_A 255 AVKDADVIVTDT 266 (353)
T ss_dssp HTTTCSEEEECC
T ss_pred HhcCCCEEEeCC
Confidence 999999998754
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=91.97 E-value=0.89 Score=46.58 Aligned_cols=69 Identities=22% Similarity=0.178 Sum_probs=41.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc-----EEEEEecCCchh----HHHHHH--cCcee--cC-CCcCCHhhhh
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----VVKVGLRKGSRS----FAEARA--AGFTE--EN-GTLGDIYETI 176 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~-----~Vivg~r~~~~s----~~~A~~--~G~~~--~d-~~~~~~~eav 176 (462)
.||+||| .|.+|.+++..|... ++ .+++.+-..... ...+.+ ++... .+ ....+..+++
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~------~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~ 106 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASG------EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVF 106 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHHcC------CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHh
Confidence 7999999 799999999999877 44 144432211121 122221 22210 00 0023567889
Q ss_pred ccCCeEEEee
Q 012479 177 SGSDLVLLLI 186 (462)
Q Consensus 177 ~~ADvViLav 186 (462)
++||+||++-
T Consensus 107 ~daDvVVita 116 (375)
T 7mdh_A 107 EDVDWALLIG 116 (375)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEcC
Confidence 9999999964
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.96 E-value=0.27 Score=48.41 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=59.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh----ccCCeEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL 183 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav----~~ADvVi 183 (462)
.| ++|.|+|.|.+|...++-++.. |.+|++..+ +++..+.+++.|.... |-...+..+.+ ...|+||
T Consensus 164 ~g-~~VlV~GaG~vG~~~~~~a~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vi 235 (339)
T 1rjw_A 164 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVDI-GDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 235 (339)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeC-CHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEE
Confidence 46 8999999999999999999988 887765544 4555677888886320 11111222222 3579999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
-++... ..+++....++++-.++..
T Consensus 236 d~~g~~---~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 236 VTAVSK---PAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEEC
T ss_pred ECCCCH---HHHHHHHHHhhcCCEEEEe
Confidence 888752 2344444556665554443
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.88 E-value=0.26 Score=48.08 Aligned_cols=92 Identities=14% Similarity=0.106 Sum_probs=60.2
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav------~~AD 180 (462)
+| ++|.|+| .|.+|.+.++-++.. |.+|++..++ .+..+.+++.|.... +....+..+.+ ...|
T Consensus 140 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 140 PG-EIILFHAAAGGVGSLACQWAKAL------GAKLIGTVSS-PEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 56 8999999 899999999999988 8887766554 445677788775310 11112222322 2578
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||-++... .+....+.++++-.++..+
T Consensus 212 vvid~~g~~----~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 212 VVYDGVGQD----TWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EEEESSCGG----GHHHHHTTEEEEEEEEECC
T ss_pred EEEECCChH----HHHHHHHHhcCCCEEEEEe
Confidence 888888763 3445556666666555443
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.22 Score=48.86 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=46.4
Q ss_pred ccccccccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC-C---Hhhh
Q 012479 101 FNLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-D---IYET 175 (462)
Q Consensus 101 f~~~~~~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~-~---~~ea 175 (462)
++.+...+++ |+|.|+| .|.+|..+++.|.+. .|++|++..|..++........++......+. + ..++
T Consensus 15 ~~~~~~~m~~-~~vlVtGatG~iG~~l~~~L~~~-----~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~ 88 (372)
T 3slg_A 15 QTQGPGSMKA-KKVLILGVNGFIGHHLSKRILET-----TDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYH 88 (372)
T ss_dssp --------CC-CEEEEESCSSHHHHHHHHHHHHH-----SSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHH
T ss_pred hhcCCcccCC-CEEEEECCCChHHHHHHHHHHhC-----CCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHH
Confidence 6666677787 9999999 699999999999875 15788777776443222221133322111122 2 3457
Q ss_pred hccCCeEEEee
Q 012479 176 ISGSDLVLLLI 186 (462)
Q Consensus 176 v~~ADvViLav 186 (462)
++++|+||.+.
T Consensus 89 ~~~~d~Vih~A 99 (372)
T 3slg_A 89 VKKCDVILPLV 99 (372)
T ss_dssp HHHCSEEEECB
T ss_pred hccCCEEEEcC
Confidence 78999999754
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.36 Score=50.20 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=49.9
Q ss_pred cCCCCEEEEEc-----cc---chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHH----HHHcCc--eecCCCc
Q 012479 108 FNGINQIGVIG-----WG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGF--TEENGTL 169 (462)
Q Consensus 108 l~gikkIgIIG-----~G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~--~~~d~~~ 169 (462)
|+| .||+||| +| ++..|++..+..- |.+|.+..... +...+. +++.|. .. +
T Consensus 186 l~G-lkva~vgd~~~s~Gd~nnVa~Sli~~l~~l------G~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~----~ 254 (418)
T 2yfk_A 186 LKG-KKVAMTWAYSPSYGKPLSVPQGIVGLMTRL------GMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTK----T 254 (418)
T ss_dssp GTT-CEEEEECCCCSSSCCCSHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEE----E
T ss_pred cCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEE----E
Confidence 789 9999997 34 4999999999887 98887765542 222333 345664 32 5
Q ss_pred CCHhhhhccCCeEEEee
Q 012479 170 GDIYETISGSDLVLLLI 186 (462)
Q Consensus 170 ~~~~eav~~ADvViLav 186 (462)
.+++|++++||+|+.-+
T Consensus 255 ~d~~eav~~ADVVytd~ 271 (418)
T 2yfk_A 255 NSMAEAFKDADVVYPKS 271 (418)
T ss_dssp SCHHHHHTTCSEEEECC
T ss_pred cCHHHHhcCCCEEEEcc
Confidence 78999999999999865
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=91.71 E-value=1 Score=40.31 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=58.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----Cc---eecCCCcCCHhh---hhcc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF---TEENGTLGDIYE---TISG 178 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~---~~~d~~~~~~~e---av~~ 178 (462)
+| .+|.-||+|. | .++..|.+. +...+| ++.+.++...+.|++. |+ ... ..+..+ ....
T Consensus 40 ~~-~~vLDiG~G~-G-~~~~~la~~----~~~~~v-~~vD~s~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~~~~ 108 (204)
T 3e05_A 40 DD-LVMWDIGAGS-A-SVSIEASNL----MPNGRI-FALERNPQYLGFIRDNLKKFVARNVTLV---EAFAPEGLDDLPD 108 (204)
T ss_dssp TT-CEEEEETCTT-C-HHHHHHHHH----CTTSEE-EEEECCHHHHHHHHHHHHHHTCTTEEEE---ECCTTTTCTTSCC
T ss_pred CC-CEEEEECCCC-C-HHHHHHHHH----CCCCEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEE---eCChhhhhhcCCC
Confidence 46 8999999997 3 344455554 002454 5666666666666542 32 110 123222 2256
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
.|+|++..+......+++++...|+||-.+++.
T Consensus 109 ~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 109 PDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp CSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEE
Confidence 899999887777788999999999998876544
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.25 Score=48.78 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=59.2
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc------cCC
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~------~AD 180 (462)
+| ++|.|+|. |.+|.+.++-++.. |.+|++..+. .+..+.+++.|.... +.. .+..+.+. ..|
T Consensus 159 ~g-~~VlV~Gasg~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 159 AG-ETVLVLGAAGGIGTAAIQIAKGM------GAKVIAVVNR-TAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCce
Confidence 46 89999998 99999999999988 9887766554 445678888776321 111 23333321 479
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+||-++... .++.....++++-.++..
T Consensus 230 vvid~~g~~----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 230 MVVDPIGGP----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EEEESCC------CHHHHHHTEEEEEEEEEC
T ss_pred EEEECCchh----HHHHHHHhhcCCCEEEEE
Confidence 999888764 344455566666655544
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.31 Score=49.63 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=51.9
Q ss_pred CCEEEEEc-ccchHHHHHHH-HHHhhhhhcCCc---EEEEE-ecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 111 INQIGVIG-WGSQGPAQAQN-LRDSLAEAKSDI---VVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~-Lrds~~~~g~G~---~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
|+||+|+| .|.+|.-+.+. |.+. ++ .+... .+...+.........+... ...+.++ .+++|+||.
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~------~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~--~~~~~~~-~~~~DvVf~ 71 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEER------DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ--DAFDLEA-LKALDIIVT 71 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT------GGGGSEEEEEESSSTTSBCCGGGTCCCBCE--ETTCHHH-HHTCSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcC------CCCeEEEEEEEeCCCCCCccccCCCceEEE--ecCChHH-hcCCCEEEE
Confidence 47999999 99999999994 4433 32 33222 2221111100000111110 0112333 578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCc--EEEEecc
Q 012479 185 LISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~ga--iL~~a~G 213 (462)
|+|.....+..+.+.. .|. +|++.++
T Consensus 72 a~g~~~s~~~a~~~~~---~G~k~vVID~ss 99 (367)
T 1t4b_A 72 CQGGDYTNEIYPKLRE---SGWQGYWIDAAS 99 (367)
T ss_dssp CSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred CCCchhHHHHHHHHHH---CCCCEEEEcCCh
Confidence 9998888877776543 454 6777665
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.2 Score=52.96 Aligned_cols=48 Identities=27% Similarity=0.344 Sum_probs=34.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G 161 (462)
.++| +++.|+|.|-+|.+++..|.+. |.+|++..|..++..+.+.+.+
T Consensus 361 ~l~~-k~vlV~GaGGig~aia~~L~~~------G~~V~i~~R~~~~a~~la~~~~ 408 (523)
T 2o7s_A 361 PLAS-KTVVVIGAGGAGKALAYGAKEK------GAKVVIANRTYERALELAEAIG 408 (523)
T ss_dssp ------CEEEECCSHHHHHHHHHHHHH------CC-CEEEESSHHHHHHHHHHTT
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcC
Confidence 3677 8999999999999999999998 8888888887555455555443
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.57 Score=45.56 Aligned_cols=74 Identities=19% Similarity=0.124 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh---HHHHH-------HcCceecCCCcCC---H
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-------AAGFTEENGTLGD---I 172 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s---~~~A~-------~~G~~~~d~~~~~---~ 172 (462)
.+++ |+|.|.|. |.+|.++++.|.+. |.+|++..|..... .+... ..++......+.+ .
T Consensus 24 ~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~ 96 (352)
T 1sb8_A 24 PAQP-KVWLITGVAGFIGSNLLETLLKL------DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDC 96 (352)
T ss_dssp HHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHH
T ss_pred CccC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHH
Confidence 3667 89999997 99999999999998 98888777654321 11111 1333211111223 3
Q ss_pred hhhhccCCeEEEeec
Q 012479 173 YETISGSDLVLLLIS 187 (462)
Q Consensus 173 ~eav~~ADvViLavp 187 (462)
.++++++|+||.+..
T Consensus 97 ~~~~~~~d~vih~A~ 111 (352)
T 1sb8_A 97 NNACAGVDYVLHQAA 111 (352)
T ss_dssp HHHHTTCSEEEECCS
T ss_pred HHHhcCCCEEEECCc
Confidence 467789999999875
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.32 Score=47.56 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHH-HHcCcee-cCCCcCCHhhhhc-----cCC
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTE-ENGTLGDIYETIS-----GSD 180 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A-~~~G~~~-~d~~~~~~~eav~-----~AD 180 (462)
+| ++|.|+|. |.+|.+.++-++.. |.+|++..++ ++..+.+ ++.|... .|....+..+.+. ..|
T Consensus 149 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NG-ETVVISGAAGAVGSVAGQIARLK------GCRVVGIAGG-AEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence 46 89999998 99999999999988 8887766554 4445666 7777631 0111123333332 479
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+||-++.. +.++.....++++-.++..+.
T Consensus 221 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 221 VFFDNVGG----EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred EEEECCCc----chHHHHHHHHhhCCEEEEEee
Confidence 99988874 356666677777766655543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=1.1 Score=43.00 Aligned_cols=90 Identities=17% Similarity=0.251 Sum_probs=57.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----Cc----eecCCCcCCHhhhhccCC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF----TEENGTLGDIYETISGSD 180 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~----~~~d~~~~~~~eav~~AD 180 (462)
+| .+|.-||||. |.- +..|.+.. |.+| ++.+.++...+.|++. |. ... ..+..+.-...|
T Consensus 90 ~~-~~vLDiGcG~-G~~-~~~la~~~-----~~~v-~gvD~s~~~~~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~fD 157 (318)
T 2fk8_A 90 PG-MTLLDIGCGW-GTT-MRRAVERF-----DVNV-IGLTLSKNQHARCEQVLASIDTNRSRQVL---LQGWEDFAEPVD 157 (318)
T ss_dssp TT-CEEEEESCTT-SHH-HHHHHHHH-----CCEE-EEEESCHHHHHHHHHHHHTSCCSSCEEEE---ESCGGGCCCCCS
T ss_pred Cc-CEEEEEcccc-hHH-HHHHHHHC-----CCEE-EEEECCHHHHHHHHHHHHhcCCCCceEEE---ECChHHCCCCcC
Confidence 46 8999999998 332 33333321 5554 5667666666666553 32 110 234444335689
Q ss_pred eEEEe-----ecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 181 vViLa-----vpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
+|+.. +++.....+++++...|+||-.+.+
T Consensus 158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99987 6666778899999999999886553
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.48 Score=50.14 Aligned_cols=75 Identities=21% Similarity=0.095 Sum_probs=49.6
Q ss_pred ccccCCCCEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCCHhhhhccCCeE
Q 012479 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
.-+|++ ++|-|||.|-.|.+ +|+-|++. |.+|.+.+... +...+..++.|+....+ .+.++...++|+|
T Consensus 14 ~~~~~~-~~i~~iGiGg~Gms~lA~~l~~~------G~~V~~sD~~~~~~~~~~L~~~gi~~~~G--~~~~~~~~~~d~v 84 (524)
T 3hn7_A 14 NLYFQG-MHIHILGICGTFMGSLALLARAL------GHTVTGSDANIYPPMSTQLEQAGVTIEEG--YLIAHLQPAPDLV 84 (524)
T ss_dssp -----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCCTTHHHHHHHTTCEEEES--CCGGGGCSCCSEE
T ss_pred ceeecC-CEEEEEEecHhhHHHHHHHHHhC------CCEEEEECCCCCcHHHHHHHHCCCEEECC--CCHHHcCCCCCEE
Confidence 467888 99999999999996 78888888 99988777653 23345556678764211 2334444679999
Q ss_pred EEe--ecc
Q 012479 183 LLL--ISD 188 (462)
Q Consensus 183 iLa--vpd 188 (462)
|+. +|+
T Consensus 85 V~Spgi~~ 92 (524)
T 3hn7_A 85 VVGNAMKR 92 (524)
T ss_dssp EECTTCCT
T ss_pred EECCCcCC
Confidence 984 554
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=91.53 E-value=0.28 Score=51.86 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=58.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc---EEEEEecCCchhHHHHHHcCceecCCCc--CCH----hhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTL--GDI----YETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~d~~~--~~~----~eav~~ADvV 182 (462)
+||.|||+|.||..++..|.++. ++ +|++.+..... .+.....|+......+ .+. ..++++.|+|
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~~-----dv~~~~I~vaD~~~~~-~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvV 87 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEKF-----DIKPSQVTIIAAEGTK-VDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFL 87 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHB-----CCCGGGEEEEESSCCS-CCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCC-----CCceeEEEEeccchhh-hhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEE
Confidence 57999999999999999998761 33 56666544322 2333444643211111 222 3456667999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|.+.++.....+++... ..|....+.+
T Consensus 88 IN~s~~~~~l~Im~acl---eaGv~YlDTa 114 (480)
T 2ph5_A 88 IDVSIGISSLALIILCN---QKGALYINAA 114 (480)
T ss_dssp EECCSSSCHHHHHHHHH---HHTCEEEESS
T ss_pred EECCccccCHHHHHHHH---HcCCCEEECC
Confidence 99999988877777543 2465556655
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.51 Score=46.48 Aligned_cols=92 Identities=17% Similarity=0.061 Sum_probs=59.3
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee-cCCC-cCCHhhhhc-----cCC
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGT-LGDIYETIS-----GSD 180 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~-~d~~-~~~~~eav~-----~AD 180 (462)
+| ++|.|+|. |.+|.+.++.++.. |.+|++..++.. ..+.+++.|... .|-. ..+..+.++ ..|
T Consensus 169 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------Ga~V~~~~~~~~-~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 240 (347)
T 2hcy_A 169 AG-HWVAISGAAGGLGSLAVQYAKAM------GYRVLGIDGGEG-KEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 240 (347)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECSTT-HHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHC------CCcEEEEcCCHH-HHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCC
Confidence 56 89999999 89999999999988 888776665543 456777777531 0111 123333333 478
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+||.++... ..++...+.|+++-.++..
T Consensus 241 ~vi~~~g~~---~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 241 GVINVSVSE---AAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp EEEECSSCH---HHHHHHTTSEEEEEEEEEC
T ss_pred EEEECCCcH---HHHHHHHHHHhcCCEEEEE
Confidence 888887642 3455556666665554443
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.49 Score=47.10 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=51.0
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-hHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
..|+| .||++||= +++.+|++..+..- |.++.+...+.-. ..+.....++.. +.+++|++++||+|+
T Consensus 150 g~l~g-l~ia~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~----~~d~~eav~~aDvvy 218 (301)
T 2ef0_A 150 GGLAG-LEVAWVGDGNNVLNSLLEVAPLA------GLKVRVATPKGYEPDPGLLKRANAFF----THDPKEAALGAHALY 218 (301)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHTCEE----ESCHHHHHTTCSEEE
T ss_pred CCcCC-cEEEEECCCchhHHHHHHHHHHc------CCEEEEECCchhcCCHHHHhhceeEE----ECCHHHHhcCCCEEE
Confidence 35789 99999997 79999999999888 9888776543211 111111123554 578999999999999
Q ss_pred Eeec
Q 012479 184 LLIS 187 (462)
Q Consensus 184 Lavp 187 (462)
..+=
T Consensus 219 ~~~~ 222 (301)
T 2ef0_A 219 TDVW 222 (301)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 8554
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.24 Score=46.73 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=45.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---Hhhhhcc-CCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISG-SDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~-ADvViLavp 187 (462)
|+|.|+|.|.+|..++..|.+. |++|++..|..++. ..++........+ ..+++++ +|+||.+..
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQ------GHEVTGLRRSAQPM-----PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEECTTSCC-----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcccc-----ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 8999999999999999999998 99888777764431 1222110011222 3446666 999998875
Q ss_pred c
Q 012479 188 D 188 (462)
Q Consensus 188 d 188 (462)
+
T Consensus 73 ~ 73 (286)
T 3gpi_A 73 A 73 (286)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.36 Score=47.60 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=60.1
Q ss_pred CCCCEEEEE-cccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-----cCCeE
Q 012479 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-----GSDLV 182 (462)
Q Consensus 109 ~gikkIgII-G~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-----~ADvV 182 (462)
+| ++|.|+ |.|.+|.+.++-++.. |.+|++..+ +++..+.+++.|....-....+..+.++ ..|+|
T Consensus 150 ~g-~~VlV~gg~G~vG~~a~qla~~~------Ga~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EG-KTLLIINGAGGVGSIATQIAKAY------GLRVITTAS-RNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEECC-SHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeC-CHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEE
Confidence 68 999999 7999999999999988 888765544 4556788888886321000112333332 47999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+-++.... .++.....++++-.++..++
T Consensus 222 ~d~~g~~~---~~~~~~~~l~~~G~iv~~~~ 249 (346)
T 3fbg_A 222 FCTFNTDM---YYDDMIQLVKPRGHIATIVA 249 (346)
T ss_dssp EESSCHHH---HHHHHHHHEEEEEEEEESSC
T ss_pred EECCCchH---HHHHHHHHhccCCEEEEECC
Confidence 98877432 33444455666655544443
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.38 Score=47.88 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=61.2
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc-----cCCe
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~-----~ADv 181 (462)
.| ++|.|+| .|.+|...++-++.. |.+|++..+. .+..+.+++.|.... +....+..+.++ ..|+
T Consensus 163 ~g-~~VlV~Ga~G~iG~~~~q~a~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~ 234 (362)
T 2c0c_A 163 EG-KKVLVTAAAGGTGQFAMQLSKKA------KCHVIGTCSS-DEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDV 234 (362)
T ss_dssp TT-CEEEETTTTBTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCE
Confidence 46 8999999 799999999999988 8887665554 445677888886320 111123333332 4799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
||-++... .++.....++++-.++..+.
T Consensus 235 vid~~g~~----~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 235 VYESVGGA----MFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EEECSCTH----HHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCHH----HHHHHHHHHhcCCEEEEEeC
Confidence 99998863 44555566666655555443
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=91.32 E-value=0.19 Score=50.47 Aligned_cols=69 Identities=22% Similarity=0.138 Sum_probs=44.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceecCCCcCC---HhhhhccCCe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDL 181 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~---~~eav~~ADv 181 (462)
..+.| +||+|||.|..|..+++.+++. |+++++.+.... .....+ +.... ....+ +.+.++++|+
T Consensus 10 ~~~~~-k~IlIlG~G~~g~~la~aa~~~------G~~vi~~d~~~~~~~~~~a--d~~~~--~~~~d~~~l~~~~~~~dv 78 (389)
T 3q2o_A 10 IILPG-KTIGIIGGGQLGRMMALAAKEM------GYKIAVLDPTKNSPCAQVA--DIEIV--ASYDDLKAIQHLAEISDV 78 (389)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSTTCTTTTTC--SEEEE--CCTTCHHHHHHHHHTCSE
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchHHhC--CceEe--cCcCCHHHHHHHHHhCCE
Confidence 44678 9999999999999999999998 998877654321 111111 11111 01223 4567788998
Q ss_pred EEEe
Q 012479 182 VLLL 185 (462)
Q Consensus 182 ViLa 185 (462)
|...
T Consensus 79 I~~~ 82 (389)
T 3q2o_A 79 VTYE 82 (389)
T ss_dssp EEES
T ss_pred eeec
Confidence 7543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.28 E-value=0.4 Score=47.08 Aligned_cols=93 Identities=17% Similarity=0.127 Sum_probs=59.2
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh------ccC
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGS 179 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav------~~A 179 (462)
-+| ++|.|+|.| .+|.+.++-++.. |.+|++..++. +..+.+++.|.... +....+..+.+ ...
T Consensus 143 ~~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~~-~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~ 214 (340)
T 3gms_A 143 QRN-DVLLVNACGSAIGHLFAQLSQIL------NFRLIAVTRNN-KHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGA 214 (340)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESSS-TTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred CCC-CEEEEeCCccHHHHHHHHHHHHc------CCEEEEEeCCH-HHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCC
Confidence 356 899999998 8999999999988 88877666554 45677888776320 11112233322 257
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|+||-++......+. ...++++-.++..+
T Consensus 215 Dvvid~~g~~~~~~~----~~~l~~~G~iv~~G 243 (340)
T 3gms_A 215 DAAIDSIGGPDGNEL----AFSLRPNGHFLTIG 243 (340)
T ss_dssp EEEEESSCHHHHHHH----HHTEEEEEEEEECC
T ss_pred cEEEECCCChhHHHH----HHHhcCCCEEEEEe
Confidence 888888875544332 24566665555443
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.4 Score=50.01 Aligned_cols=93 Identities=17% Similarity=0.266 Sum_probs=66.4
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-c-CceecCCCcCCHhh
Q 012479 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A-GFTEENGTLGDIYE 174 (462)
Q Consensus 107 ~l~gikkIgIIG~G----------~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-~-G~~~~d~~~~~~~e 174 (462)
.++| +||+|+|+- +-...++..|.+. |.+|.+.+..- .+.+++ . ++.. +.+.++
T Consensus 319 ~~~~-~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~------g~~v~~~DP~~---~~~~~~~~~~~~~----~~~~~~ 384 (446)
T 4a7p_A 319 DVRG-KTVGILGLTFKPNTDDMRDAPSLSIIAALQDA------GATVKAYDPEG---VEQASKMLTDVEF----VENPYA 384 (446)
T ss_dssp CCTT-CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHT------SCEEEEECSSC---HHHHGGGCSSCCB----CSCHHH
T ss_pred cCCC-CEEEEEEEEeCCCCcccccChHHHHHHHHHHC------CCEEEEECCCC---CHhHHHhcCCceE----ecChhH
Confidence 4788 999999997 7788999999998 99887765432 223322 2 4442 467889
Q ss_pred hhccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEEeccc
Q 012479 175 TISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 175 av~~ADvViLavpd~a~~~-vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++++||+|+++|.-....+ =++.+...|+. .+|.|.-++
T Consensus 385 ~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~-~~i~D~r~~ 424 (446)
T 4a7p_A 385 AADGADALVIVTEWDAFRALDLTRIKNSLKS-PVLVDLRNI 424 (446)
T ss_dssp HHTTBSEEEECSCCTTTTSCCHHHHHTTBSS-CBEECSSCC
T ss_pred HhcCCCEEEEeeCCHHhhcCCHHHHHHhcCC-CEEEECCCC
Confidence 9999999999998665543 24567776754 567777664
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=91.21 E-value=0.54 Score=46.98 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=52.2
Q ss_pred cccCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcCceecCCCcCCHhhhhcc
Q 012479 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISG 178 (462)
Q Consensus 106 ~~l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~eav~~ 178 (462)
..|+| .||++||= +++.+|++..+..- .|.++.+...+ +....+.+++.|.... .+.+++|++++
T Consensus 150 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~ 221 (310)
T 3csu_A 150 GRLDN-LHVAMVGDLKYGRTVHSLTQALAKF-----DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAE 221 (310)
T ss_dssp SCSSS-CEEEEESCTTTCHHHHHHHHHHHTS-----SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCGGGTTTT
T ss_pred CCcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCcccccCHHHHHHHHHcCCeEE--EEcCHHHHhcC
Confidence 35789 99999997 58999999988653 16777766443 2233466667775310 15789999999
Q ss_pred CCeEEEee
Q 012479 179 SDLVLLLI 186 (462)
Q Consensus 179 ADvViLav 186 (462)
||+|+...
T Consensus 222 aDvvyt~~ 229 (310)
T 3csu_A 222 VDILYMTR 229 (310)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 99999865
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.18 E-value=0.2 Score=50.16 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=58.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCC---HhhhhccCCeEEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~---~~eav~~ADvViL 184 (462)
.| .+|.|+|.|.+|...++-++.. |.+|++..++ ++..+.+++.|.... + ..+ .+++....|+||-
T Consensus 194 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~Vi~~~~~-~~~~~~a~~lGa~~vi~--~~~~~~~~~~~~g~Dvvid 263 (369)
T 1uuf_A 194 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTS-EAKREAAKALGADEVVN--SRNADEMAAHLKSFDFILN 263 (369)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCcEEec--cccHHHHHHhhcCCCEEEE
Confidence 46 8999999999999999999888 8886555544 455778888886320 1 111 1222346799999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
++.... .+++....++++-.++..
T Consensus 264 ~~g~~~---~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 264 TVAAPH---NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp CCSSCC---CHHHHHTTEEEEEEEEEC
T ss_pred CCCCHH---HHHHHHHHhccCCEEEEe
Confidence 887532 233444556665555444
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=91.18 E-value=0.23 Score=49.36 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=59.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcC-CHhhhh-ccCCeEEEe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETI-SGSDLVLLL 185 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~-~~~eav-~~ADvViLa 185 (462)
+| .+|.|+|.|.+|...++-++.. |.+|++..++ ++..+.+++.|.... +.... +..+.+ ...|+||-+
T Consensus 179 ~g-~~VlV~GaG~vG~~~~qlak~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~ 250 (360)
T 1piw_A 179 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRS-SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 250 (360)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEEC
Confidence 56 8999999999999999999988 8886655544 445778888886320 10011 222333 368999999
Q ss_pred ecc--hhHHHHHHHHHhcCCCCcEEEEe
Q 012479 186 ISD--AAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 186 vpd--~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+.. .. .+++..+.++++-.++..
T Consensus 251 ~g~~~~~---~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 251 ASSLTDI---DFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CSCSTTC---CTTTGGGGEEEEEEEEEC
T ss_pred CCCCcHH---HHHHHHHHhcCCCEEEEe
Confidence 875 21 233445566666555443
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=91.17 E-value=0.54 Score=44.51 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=32.8
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHHhhhhhcCCcEEEEEecCCch
Q 012479 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (462)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~ 152 (462)
.|+| |++-|-|.+ -+|.++|+.|.+. |.+|++..|+...
T Consensus 3 ~l~g-K~alVTGaa~~~GIG~aiA~~la~~------Ga~Vvi~~r~~~~ 44 (256)
T 4fs3_A 3 NLEN-KTYVIMGIANKRSIAFGVAKVLDQL------GAKLVFTYRKERS 44 (256)
T ss_dssp CCTT-CEEEEECCCSTTCHHHHHHHHHHHT------TCEEEEEESSGGG
T ss_pred CCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 4789 999999975 3999999999999 9999888876443
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.39 Score=46.82 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=64.1
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee-cCCCcCC-HhhhhccCCeEEE
Q 012479 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGD-IYETISGSDLVLL 184 (462)
Q Consensus 108 l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~-~d~~~~~-~~eav~~ADvViL 184 (462)
-+| .+|.|+| .|.+|...++-++.. |.+|++.. . .+..+.+++.|... .+....+ ..+.++..|+||-
T Consensus 151 ~~g-~~vlV~Ga~G~vG~~a~q~a~~~------Ga~vi~~~-~-~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d 221 (321)
T 3tqh_A 151 KQG-DVVLIHAGAGGVGHLAIQLAKQK------GTTVITTA-S-KRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVID 221 (321)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEE-C-HHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEE
T ss_pred CCC-CEEEEEcCCcHHHHHHHHHHHHc------CCEEEEEe-c-cchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEE
Confidence 356 8999997 999999999999988 88876554 3 33478888888742 0111223 5566678999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
++..... .+....++++-.++..+.
T Consensus 222 ~~g~~~~----~~~~~~l~~~G~iv~~g~ 246 (321)
T 3tqh_A 222 LVGGDVG----IQSIDCLKETGCIVSVPT 246 (321)
T ss_dssp SSCHHHH----HHHGGGEEEEEEEEECCS
T ss_pred CCCcHHH----HHHHHhccCCCEEEEeCC
Confidence 9885433 445566777666555543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=91.13 E-value=1.2 Score=46.48 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=63.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-ceecCCCcCC----HhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGD----IYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~----~~eav~~ADvViLav 186 (462)
++|.|+|.|++|..+|+.|.+ .++|.+-.+...+....|++.- ..+-.+...+ .++-+.++|+++-+|
T Consensus 236 ~~v~I~GgG~ig~~lA~~L~~-------~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T 308 (461)
T 4g65_A 236 RRIMIVGGGNIGASLAKRLEQ-------TYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALT 308 (461)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECC
T ss_pred cEEEEEcchHHHHHHHHHhhh-------cCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcc
Confidence 789999999999999999854 4677777666556556666542 2211222223 234589999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
.++..-=+..-++..+...+++..+.-
T Consensus 309 ~~De~Ni~~~llAk~~gv~kvIa~vn~ 335 (461)
T 4g65_A 309 NEDETNIMSAMLAKRMGAKKVMVLIQR 335 (461)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred cCcHHHHHHHHHHHHcCCccccccccc
Confidence 987654444456666666667765543
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=91.06 E-value=0.2 Score=50.22 Aligned_cols=90 Identities=11% Similarity=0.075 Sum_probs=54.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhc-CCcEEEEEecCCc--hhHHHHHHcCceecCCCcCCH-hhhhccCCeEEEee
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAK-SDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g-~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~-~eav~~ADvViLav 186 (462)
+||+|+| .|.+|..+.+.|.++ + ..++++...+..+ +... -.|... .+.+. .+..+++|+||+|+
T Consensus 4 ~kV~I~GAtG~iG~~llr~L~~~----~~p~~elv~i~s~~~~G~~~~---~~~~~i---~~~~~~~~~~~~vDvVf~a~ 73 (336)
T 2r00_A 4 FNVAIFGATGAVGETMLEVLQER----EFPVDELFLLASERSEGKTYR---FNGKTV---RVQNVEEFDWSQVHIALFSA 73 (336)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT----TCCEEEEEEEECTTTTTCEEE---ETTEEE---EEEEGGGCCGGGCSEEEECS
T ss_pred cEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEEECCCCCCCcee---ecCcee---EEecCChHHhcCCCEEEECC
Confidence 7899999 999999999988765 0 0235444332211 1000 011110 01111 22446899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
|.....+..+.+. +.|..+++.++-
T Consensus 74 g~~~s~~~a~~~~---~~G~~vId~s~~ 98 (336)
T 2r00_A 74 GGELSAKWAPIAA---EAGVVVIDNTSH 98 (336)
T ss_dssp CHHHHHHHHHHHH---HTTCEEEECSST
T ss_pred CchHHHHHHHHHH---HcCCEEEEcCCc
Confidence 9988777776543 467777777663
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.52 Score=46.00 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=59.4
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee-cCCCc-CCHhhhhc-----cCC
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTL-GDIYETIS-----GSD 180 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~-~d~~~-~~~~eav~-----~AD 180 (462)
+| ++|.|+|. |.+|.+.++.++.. |.+|++..++ ....+.+++.|... .|-.. .+..+.+. ..|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 145 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGS-DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp SS-CEEEEESTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEecCCCcHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCe
Confidence 46 89999998 99999999999988 8887766554 44456667777521 01111 23333332 468
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||.++... .+++....++++-.++..+
T Consensus 217 ~vi~~~g~~----~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 217 CYFDNVGGE----FLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEESSCHH----HHHHHHTTEEEEEEEEECC
T ss_pred EEEECCChH----HHHHHHHHHhcCCEEEEEe
Confidence 888887743 3555566677766555443
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=0.24 Score=49.48 Aligned_cols=89 Identities=19% Similarity=0.156 Sum_probs=56.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-HcCceec-CCCcCC---HhhhhccCCeEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGTLGD---IYETISGSDLVL 183 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~-d~~~~~---~~eav~~ADvVi 183 (462)
.| .+|.|+|.|.+|...++-++.. |.+|++..+.. ...+.+. +.|.... | ..+ ..++....|+||
T Consensus 187 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~-~~~~~~~~~lGa~~v~~--~~~~~~~~~~~~~~D~vi 256 (366)
T 1yqd_A 187 PG-KHIGIVGLGGLGHVAVKFAKAF------GSKVTVISTSP-SKKEEALKNFGADSFLV--SRDQEQMQAAAGTLDGII 256 (366)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCG-GGHHHHHHTSCCSEEEE--TTCHHHHHHTTTCEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHhcCCceEEe--ccCHHHHHHhhCCCCEEE
Confidence 67 8999999999999999999988 88876665543 3455555 6775310 1 112 223334679999
Q ss_pred Eeecch-hHHHHHHHHHhcCCCCcEEEEe
Q 012479 184 LLISDA-AQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 184 Lavpd~-a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
-++... .....+ +.|+++-.++..
T Consensus 257 d~~g~~~~~~~~~----~~l~~~G~iv~~ 281 (366)
T 1yqd_A 257 DTVSAVHPLLPLF----GLLKSHGKLILV 281 (366)
T ss_dssp ECCSSCCCSHHHH----HHEEEEEEEEEC
T ss_pred ECCCcHHHHHHHH----HHHhcCCEEEEE
Confidence 988743 333333 344554444433
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=91.01 E-value=0.55 Score=48.17 Aligned_cols=88 Identities=15% Similarity=0.172 Sum_probs=55.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCC-cEEE-EE-ec-CCchhHHHH-------------HHcCceecCCCcCCHh
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVK-VG-LR-KGSRSFAEA-------------RAAGFTEENGTLGDIY 173 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G-~~Vi-vg-~r-~~~~s~~~A-------------~~~G~~~~d~~~~~~~ 173 (462)
.|||||| .|..|.-+.+-|.+. . +++. +. .+ ...+..... .+.-+.. .+.+
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~h------p~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~-----~~~~ 88 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKH------PEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE-----CKPE 88 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC------SSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE-----SSSC
T ss_pred cEEEEECCCChHHHHHHHHHHcC------CCceEEEeeccccccCCCHHHhcccccccccccccccceEEe-----Cchh
Confidence 6899999 699999999877654 3 3543 22 22 222333221 1111111 1222
Q ss_pred hhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 174 eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+.++++|+||+|+|.....++.+++. +.|..|+|.++
T Consensus 89 ~~~~~~Dvvf~alp~~~s~~~~~~~~---~~G~~VIDlSa 125 (381)
T 3hsk_A 89 GNFLECDVVFSGLDADVAGDIEKSFV---EAGLAVVSNAK 125 (381)
T ss_dssp TTGGGCSEEEECCCHHHHHHHHHHHH---HTTCEEEECCS
T ss_pred hhcccCCEEEECCChhHHHHHHHHHH---hCCCEEEEcCC
Confidence 24678999999999988888887764 46877887766
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.53 Score=48.64 Aligned_cols=71 Identities=15% Similarity=0.133 Sum_probs=50.0
Q ss_pred ccCCCCEEEEEcc-----c---chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHH----HHHHcCceecCCCcC
Q 012479 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFA----EARAAGFTEENGTLG 170 (462)
Q Consensus 107 ~l~gikkIgIIG~-----G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~----~A~~~G~~~~d~~~~ 170 (462)
-|+| +||+|||. | ++..|++..+..- |.++.+.... .+...+ .|++.|.... .+.
T Consensus 188 ~l~G-lkva~vgd~~~~~G~~nnVa~Sli~~~~~l------G~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~--~~~ 258 (399)
T 3q98_A 188 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFR--QVT 258 (399)
T ss_dssp GGTT-CEEEEECCCCSSCCCCTHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE--EES
T ss_pred ccCC-CEEEEEEecccccCcchHHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EEc
Confidence 4788 99999984 4 7889999988877 8888776543 222233 2345564210 157
Q ss_pred CHhhhhccCCeEEEee
Q 012479 171 DIYETISGSDLVLLLI 186 (462)
Q Consensus 171 ~~~eav~~ADvViLav 186 (462)
+++|++++||+|+.-+
T Consensus 259 d~~eav~~aDvVytd~ 274 (399)
T 3q98_A 259 SMEEAFKDADIVYPKS 274 (399)
T ss_dssp CHHHHHTTCSEEEECC
T ss_pred CHHHHhCCCCEEEecC
Confidence 8999999999998765
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=90.86 E-value=0.35 Score=47.90 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=59.9
Q ss_pred CCCCEEEEE-cccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc-----cCCe
Q 012479 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (462)
Q Consensus 109 ~gikkIgII-G~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~-----~ADv 181 (462)
.| ++|.|+ |.|.+|.+.++.++.. |.+|++..++ .+..+.+++.|.... +....+..+.+. ..|+
T Consensus 167 ~g-~~VlV~Gg~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 167 EG-ESVLIHGGTSGIGTTAIQLARAF------GAEVYATAGS-TGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceE
Confidence 46 899999 6899999999999988 9887666554 445677787776320 111123333332 4799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
||-++.... ++.....++++-.++..+
T Consensus 239 vid~~g~~~----~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 239 ILDMIGAAY----FERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEESCCGGG----HHHHHHTEEEEEEEEECC
T ss_pred EEECCCHHH----HHHHHHHhccCCEEEEEE
Confidence 998888653 344445566665555443
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.28 Score=48.48 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=48.9
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHH-HcCceecCCCcCC---HhhhhccC
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGS 179 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~---~~eav~~A 179 (462)
..+++ |+|.|.|. |.+|.++++.|.+. | .+|++..|......+... ..++......+.+ ..++++++
T Consensus 28 ~~~~~-~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~ 100 (377)
T 2q1s_A 28 SKLAN-TNVMVVGGAGFVGSNLVKRLLEL------GVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEY 100 (377)
T ss_dssp GGGTT-CEEEEETTTSHHHHHHHHHHHHT------TCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCC
T ss_pred HHhCC-CEEEEECCccHHHHHHHHHHHHc------CCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCC
Confidence 45788 99999995 99999999999998 9 888777665332211110 1222211111223 34567789
Q ss_pred CeEEEeecc
Q 012479 180 DLVLLLISD 188 (462)
Q Consensus 180 DvViLavpd 188 (462)
|+||.+...
T Consensus 101 d~Vih~A~~ 109 (377)
T 2q1s_A 101 DYVFHLATY 109 (377)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999988653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.49 Score=46.87 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=58.2
Q ss_pred cCCCCEEEEEcccchHHHH-HHHH-HHhhhhhcCCcE-EEEEecCCch---hHHHHHHcCceecCCCcCCHhhhhc----
Q 012479 108 FNGINQIGVIGWGSQGPAQ-AQNL-RDSLAEAKSDIV-VKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETIS---- 177 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~Ai-A~~L-rds~~~~g~G~~-Vivg~r~~~~---s~~~A~~~G~~~~d~~~~~~~eav~---- 177 (462)
+++ .+|.|+|.|.+|... ++-+ +.. |.+ |++..+. ++ ..+.+++.|....+....+..+ +.
T Consensus 171 ~~~-~~VlV~GaG~vG~~a~iqla~k~~------Ga~~Vi~~~~~-~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~g 241 (357)
T 2b5w_A 171 WDP-SSAFVLGNGSLGLLTLAMLKVDDK------GYENLYCLGRR-DRPDPTIDIIEELDATYVDSRQTPVED-VPDVYE 241 (357)
T ss_dssp CCC-CEEEEECCSHHHHHHHHHHHHCTT------CCCEEEEEECC-CSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHHHc------CCcEEEEEeCC-cccHHHHHHHHHcCCcccCCCccCHHH-HHHhCC
Confidence 345 899999999999999 8888 766 876 6665554 33 4778888897531111112233 32
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
..|+||-++.... .+++....++++-.++..
T Consensus 242 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 242 QMDFIYEATGFPK---HAIQSVQALAPNGVGALL 272 (357)
T ss_dssp CEEEEEECSCCHH---HHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCCChH---HHHHHHHHHhcCCEEEEE
Confidence 4799998887532 334444555665555444
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=90.71 E-value=0.25 Score=51.35 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHH-hhhhhcCCcEEEEEecC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrd-s~~~~g~G~~Vivg~r~ 149 (462)
|+| ++|+|+|+|++|..+|+.|+. . |.+|+...+.
T Consensus 210 l~g-ktvgI~G~G~VG~~vA~~l~~~~------G~kVv~~sD~ 245 (419)
T 1gtm_A 210 LKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSDS 245 (419)
T ss_dssp STT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECS
T ss_pred cCC-CEEEEEcCCHHHHHHHHHHHHhc------CCEEEEEeCC
Confidence 899 999999999999999999998 7 9887755454
|
| >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A | Back alignment and structure |
|---|
Probab=90.66 E-value=0.53 Score=46.16 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=43.5
Q ss_pred ccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc
Q 012479 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG 178 (462)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ 178 (462)
+.|....+..+| +||++||+ + +.+...+ .. +.++.|.+++.. .|... ....++++++
T Consensus 130 d~~~~~~~~~~g-~kV~vIG~--~-P~i~~~l-~~------~~~v~V~d~~p~--------~g~~p----~~~~e~ll~~ 186 (270)
T 2h1q_A 130 DPFIMSQNEVKG-KKVGVVGH--F-PHLESLL-EP------ICDLSILEWSPE--------EGDYP----LPASEFILPE 186 (270)
T ss_dssp CHHHHTTTTTTT-SEEEEESC--C-TTHHHHH-TT------TSEEEEEESSCC--------TTCEE----GGGHHHHGGG
T ss_pred cHHHHHHhhcCC-CEEEEECC--C-HHHHHHH-hC------CCCEEEEECCCC--------CCCCC----hHHHHHHhhc
Confidence 456555567788 99999999 4 5666654 44 678888877643 24432 2345668899
Q ss_pred CCeEEEe
Q 012479 179 SDLVLLL 185 (462)
Q Consensus 179 ADvViLa 185 (462)
||+|++.
T Consensus 187 aD~viiT 193 (270)
T 2h1q_A 187 CDYVYIT 193 (270)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 9998865
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=90.58 E-value=0.35 Score=47.48 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=31.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r 148 (462)
-.++| ++|.|||.|..|..-+..|.+. |.+|+|...
T Consensus 9 ~~l~~-k~VLVVGgG~va~rka~~Ll~~------Ga~VtViap 44 (274)
T 1kyq_A 9 HQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVSP 44 (274)
T ss_dssp ECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEEE
T ss_pred EEcCC-CEEEEECCcHHHHHHHHHHHhC------CCEEEEEcC
Confidence 45789 9999999999999999999998 888777654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=1.7 Score=43.30 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=61.3
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee-cCCCcCCHhhhhc-----cCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETIS-----GSD 180 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~-~d~~~~~~~eav~-----~AD 180 (462)
-+| .+|.|+|. |.+|...++-++.. |.+|++.. +++..+.+++.|... .+....+..+.++ ..|
T Consensus 163 ~~g-~~VlV~Ga~G~vG~~a~qla~~~------Ga~Vi~~~--~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKP-VYVLVYGGSTATATVTMQMLRLS------GYIPIATC--SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSC-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEE--CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCC-cEEEEECCCcHHHHHHHHHHHHC------CCEEEEEe--CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCcc
Confidence 467 89999999 89999999999988 88776543 355678999999632 0111123333332 389
Q ss_pred eEEEeecchhHHHHHHHHHhcC-CCCcEEEEecc
Q 012479 181 LVLLLISDAAQADNYEKIFSCM-KPNSILGLSHG 213 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~L-k~gaiL~~a~G 213 (462)
+||-++.... .++.....+ +++-.++..+.
T Consensus 234 ~v~d~~g~~~---~~~~~~~~l~~~~G~iv~~g~ 264 (371)
T 3gqv_A 234 YALDCITNVE---STTFCFAAIGRAGGHYVSLNP 264 (371)
T ss_dssp EEEESSCSHH---HHHHHHHHSCTTCEEEEESSC
T ss_pred EEEECCCchH---HHHHHHHHhhcCCCEEEEEec
Confidence 9999988632 233334455 46555555543
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.45 Score=48.16 Aligned_cols=70 Identities=9% Similarity=-0.003 Sum_probs=48.8
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHH----HHHcCceecCCCcCCHhhhhc
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~----A~~~G~~~~d~~~~~~~eav~ 177 (462)
.|+| .||++||= +++..|++..+..- |.++.+...+ ++...+. +++.|.... .+.+++ +++
T Consensus 172 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~--~~~d~~-av~ 241 (339)
T 4a8t_A 172 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 241 (339)
T ss_dssp CGGG-CEEEEESSCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EECChh-HHc
Confidence 5889 99999995 68899999999887 8888776443 2222232 344564210 146788 999
Q ss_pred cCCeEEEee
Q 012479 178 GSDLVLLLI 186 (462)
Q Consensus 178 ~ADvViLav 186 (462)
+||+|+.-+
T Consensus 242 ~aDvvytd~ 250 (339)
T 4a8t_A 242 GADFLYTDV 250 (339)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecC
Confidence 999999633
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.32 Score=46.47 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=44.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee--cCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~--~d~~~~~~~eav~~ADvViLavp 187 (462)
|+|.|.| .|.+|.++++.|.+. |++|++..|. +...+ .. ++.. .|-...+..++++++|+||.+..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~-~~~~~-~~--~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKND------GNTPIILTRS-IGNKA-IN--DYEYRVSDYTLEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC-CC--------CCEEEECCCCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhC------CCEEEEEeCC-CCccc-CC--ceEEEEccccHHHHHHhhcCCCEEEEccc
Confidence 7999999 699999999999999 9998877776 32222 21 3321 11111224567889999998864
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=0.56 Score=46.09 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=58.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh------ccCC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSD 180 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav------~~AD 180 (462)
-.| .+|.|+|.|.+|...++-++.. | .+|++ .+.+++..+.+++.|....-....+..+.+ ...|
T Consensus 170 ~~g-~~vlv~GaG~vG~~a~qla~~~------g~~~Vi~-~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d 241 (345)
T 3jv7_A 170 GPG-STAVVIGVGGLGHVGIQILRAV------SAARVIA-VDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGAT 241 (345)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEE-EESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEE-EcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCe
Confidence 346 8999999999999998888866 4 35554 444456678889988642100011222222 1689
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||-++.... .+++....++++-.++..+
T Consensus 242 ~v~d~~G~~~---~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 242 AVFDFVGAQS---TIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEEESSCCHH---HHHHHHHHEEEEEEEEECS
T ss_pred EEEECCCCHH---HHHHHHHHHhcCCEEEEEC
Confidence 9999988652 3444445566665555443
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=90.42 E-value=0.81 Score=46.52 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec-C-CchhHHHHHH----cC------------ceecCC-C--c
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-K-GSRSFAEARA----AG------------FTEENG-T--L 169 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r-~-~~~s~~~A~~----~G------------~~~~d~-~--~ 169 (462)
+.||||+|+|.+|.-+.+.|.+. ..++++...+ . +........+ .| +.. ++ . +
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~-----p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v-~g~~i~v 90 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMER-----NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCI-NGKVVKV 90 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC-----SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEE-TTEEEEE
T ss_pred ceEEEEECCCHHHHHHHHHHHcC-----CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEE-CCeEEEE
Confidence 46999999999999999988765 1466655444 2 2211111111 11 000 00 0 1
Q ss_pred ---CCHhhhh---ccCCeEEEeecchhHHHHHHHHHhcCCCCc--EEEEecc
Q 012479 170 ---GDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (462)
Q Consensus 170 ---~~~~eav---~~ADvViLavpd~a~~~vl~eI~~~Lk~ga--iL~~a~G 213 (462)
.++++.- .++|+||.|+|.....+..+ .+++.|. +|++.++
T Consensus 91 ~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~---~~l~~GakkvVId~pa 139 (354)
T 3cps_A 91 FQAKDPAEIPWGASGAQIVCESTGVFTTEEKAS---LHLKGGAKKVIISAPP 139 (354)
T ss_dssp ECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHG---GGGTTTCSEEEESSCC
T ss_pred EecCChHHCCcccCCCCEEEECCCchhhHHHHH---HHHHcCCcEEEEeCCC
Confidence 1333331 47999999999877765554 4566776 6665554
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=90.40 E-value=0.96 Score=46.98 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=65.5
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-------------Cce
Q 012479 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------GFT 163 (462)
Q Consensus 107 ~l~gikkIgIIG~G----------~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-------------G~~ 163 (462)
.++| +||+|+|+- +-...++..|.+. |.+|.+.+..-.. .+..... ++.
T Consensus 326 ~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 397 (467)
T 2q3e_A 326 TVTD-KKIAILGFAFKKDTGDTRESSSIYISKYLMDE------GAHLHIYDPKVPR-EQIVVDLSHPGVSEDDQVSRLVT 397 (467)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCH-HHHHHHHCC------CHHHHHEE
T ss_pred ccCC-CEEEEEeeccCCCCcchhhChHHHHHHHHHHC------CCEEEEEcCccCH-HHHhhhhccccccccccccCcee
Confidence 4788 999999986 3677888888888 8888776553221 1110111 233
Q ss_pred ecCCCcCCHhhhhccCCeEEEeecchhHHHH-HHHHHhcCCCCcEEEEeccc
Q 012479 164 EENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 164 ~~d~~~~~~~eav~~ADvViLavpd~a~~~v-l~eI~~~Lk~gaiL~~a~G~ 214 (462)
. ..+..|++++||+|+++|.-.....+ ++++...|+...+|.|.-++
T Consensus 398 ~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~ 445 (467)
T 2q3e_A 398 I----SKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRV 445 (467)
T ss_dssp E----CSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCT
T ss_pred e----cCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCc
Confidence 2 34788899999999999997766543 45677777765557777654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=90.38 E-value=0.3 Score=44.73 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=48.0
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCc--eecCCC-cCCHhhhhccCCe
Q 012479 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGF--TEENGT-LGDIYETISGSDL 181 (462)
Q Consensus 108 l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~--~~~d~~-~~~~~eav~~ADv 181 (462)
+++ |+|.|.| .|.+|.++++.|.+. |. +|++..|...+..+.. ..++ ...|-+ ..+..+++++.|+
T Consensus 16 m~~-~~vlVtGasg~iG~~l~~~L~~~------G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~ 87 (242)
T 2bka_A 16 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDDYASAFQGHDV 87 (242)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred hcC-CeEEEECCCcHHHHHHHHHHHcC------CCCCEEEEEEcCCCCccccc-cCCceEEecCcCCHHHHHHHhcCCCE
Confidence 567 8999999 699999999999999 98 8888777643221111 1122 110100 1234567788999
Q ss_pred EEEeecc
Q 012479 182 VLLLISD 188 (462)
Q Consensus 182 ViLavpd 188 (462)
||.+...
T Consensus 88 vi~~ag~ 94 (242)
T 2bka_A 88 GFCCLGT 94 (242)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9998754
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=0.35 Score=47.59 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=42.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCCc--hhHHHHHH--c---CceecCC-CcCCHhhh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS--RSFAEARA--A---GFTEENG-TLGDIYET 175 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~~--~s~~~A~~--~---G~~~~d~-~~~~~~ea 175 (462)
+||.|+|. |.+|.+++..|... |+ +|++.++... +....+.. . .+.. |- ...+..++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~------g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~-di~~~~~~~~a 77 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG------EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLA-GLEATDDPKVA 77 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEE-EEEEESCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccC-CeEeccChHHH
Confidence 68999996 99999999999887 64 5655444321 11111111 1 1210 00 02456788
Q ss_pred hccCCeEEEee
Q 012479 176 ISGSDLVLLLI 186 (462)
Q Consensus 176 v~~ADvViLav 186 (462)
++++|+||.+.
T Consensus 78 ~~~~D~Vih~A 88 (327)
T 1y7t_A 78 FKDADYALLVG 88 (327)
T ss_dssp TTTCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 99999999874
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=90.32 E-value=0.48 Score=45.79 Aligned_cols=68 Identities=29% Similarity=0.235 Sum_probs=44.0
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---HhhhhccCCe
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDL 181 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADv 181 (462)
+.+++ |+|.|.|. |.+|.++++.|.+. |++|++..|.... .++......+.+ ..++++++|+
T Consensus 15 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d~ 80 (347)
T 4id9_A 15 VPRGS-HMILVTGSAGRVGRAVVAALRTQ------GRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVSA 80 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHT------TCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCSE
T ss_pred cccCC-CEEEEECCCChHHHHHHHHHHhC------CCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCCE
Confidence 56777 99999997 99999999999999 9988877766433 222110011223 4467889999
Q ss_pred EEEeec
Q 012479 182 VLLLIS 187 (462)
Q Consensus 182 ViLavp 187 (462)
||.+..
T Consensus 81 vih~A~ 86 (347)
T 4id9_A 81 VLHLGA 86 (347)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 998754
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=1.3 Score=46.61 Aligned_cols=92 Identities=11% Similarity=0.113 Sum_probs=56.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-CceecCCCcCCHh---h-hhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIY---E-TISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~---e-av~~ADvViLav 186 (462)
++|.|+|+|..|..+++.|.+. |+++++.+ .+++..+.+.+. |+..--+...+.+ + -+++||.|++ +
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~------~~~vvvid-~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t 199 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESR------NHLFVVVT-DNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-N 199 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTT------TCCEEEEE-SCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-C
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-e
Confidence 6899999999999999999988 88876654 445556667766 7643211122222 2 2678999998 5
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+++...-..-..+..+..-.++.-+
T Consensus 200 ~~D~~n~~~~~~ar~~~~~~iiar~ 224 (565)
T 4gx0_A 200 LSDPDNANLCLTVRSLCQTPIIAVV 224 (565)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEEE
Confidence 5444322222233344433355443
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=0.31 Score=47.21 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=50.3
Q ss_pred cccccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-cCceecCCCcCC---Hhhhhc-
Q 012479 104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYETIS- 177 (462)
Q Consensus 104 ~~~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~---~~eav~- 177 (462)
.++.++| |+|.|.|. |-+|.++++.|.+. |++|++..|......+.... .++......+.+ ..++++
T Consensus 14 ~~~~~~~-~~vlVTGasG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~ 86 (330)
T 2pzm_A 14 LVPRGSH-MRILITGGAGCLGSNLIEHWLPQ------GHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDS 86 (330)
T ss_dssp CCSTTTC-CEEEEETTTSHHHHHHHHHHGGG------TCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CcccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhh
Confidence 3688899 99999996 99999999999998 99888777743321110010 122110011233 345677
Q ss_pred -cCCeEEEeec
Q 012479 178 -GSDLVLLLIS 187 (462)
Q Consensus 178 -~ADvViLavp 187 (462)
+.|+||.+..
T Consensus 87 ~~~D~vih~A~ 97 (330)
T 2pzm_A 87 FKPTHVVHSAA 97 (330)
T ss_dssp HCCSEEEECCC
T ss_pred cCCCEEEECCc
Confidence 8999998864
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.15 E-value=0.97 Score=42.71 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=33.7
Q ss_pred ccccceeecCcccccccccccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 88 DRDEYIVRGGRDLFNLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 88 ~~~e~~~~~~~~~f~~~~~~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
|+++..++ |..+.....++| |+|.|.| .|-+|.++++.|.+. |.+|++..|..
T Consensus 12 ~~~~~~~~---~~~~~~~~~l~~-k~vlITGasggIG~~la~~L~~~------G~~V~~~~r~~ 65 (272)
T 1yb1_A 12 GRENLYFQ---GHMPKRRKSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINK 65 (272)
T ss_dssp ----------------CCCCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred cchhheec---cccCCcccccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEEcCH
Confidence 44444333 555555567889 9999998 568999999999998 99988777653
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=90.00 E-value=0.24 Score=49.82 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=52.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcC-CcEEEEEecCCc--hhHHHHHHcCceecCCCcCCH-hhhhccCCeEEEee
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~-G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~-~eav~~ADvViLav 186 (462)
+||+|+| .|.+|..+.+.|.++ +. .++++...+... +... -.|... .+.+. .+..+++|+||+|+
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~----~~~~~elv~i~s~~~~g~~~~---~~g~~i---~~~~~~~~~~~~~DvV~~a~ 76 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDER----DFPLHRLHLLASAESAGQRMG---FAESSL---RVGDVDSFDFSSVGLAFFAA 76 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT----TCCCSCEEEEECTTTTTCEEE---ETTEEE---ECEEGGGCCGGGCSEEEECS
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCCcEEEEEEecCCCCCCccc---cCCcce---EEecCCHHHhcCCCEEEEcC
Confidence 6899999 899999999998855 00 224443332211 1100 012111 01111 23367899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|.....++.+.+. +.|..+++.++
T Consensus 77 g~~~s~~~a~~~~---~aG~kvId~Sa 100 (340)
T 2hjs_A 77 AAEVSRAHAERAR---AAGCSVIDLSG 100 (340)
T ss_dssp CHHHHHHHHHHHH---HTTCEEEETTC
T ss_pred CcHHHHHHHHHHH---HCCCEEEEeCC
Confidence 9887777766543 45776766655
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=89.94 E-value=0.53 Score=47.98 Aligned_cols=69 Identities=9% Similarity=-0.018 Sum_probs=48.4
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHH----HHHcCceecCCCcCCHhhhhc
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~----A~~~G~~~~d~~~~~~~eav~ 177 (462)
.|+| .||++||= +++..|++..+..- |.++.+.... ++...+. +++.|.... .+.+++ +++
T Consensus 150 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~-av~ 219 (355)
T 4a8p_A 150 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 219 (355)
T ss_dssp CGGG-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EECCHH-HHc
Confidence 5888 99999994 68999999999887 8888776443 2222232 344564210 146788 999
Q ss_pred cCCeEEEe
Q 012479 178 GSDLVLLL 185 (462)
Q Consensus 178 ~ADvViLa 185 (462)
+||+|+.-
T Consensus 220 ~aDVVytd 227 (355)
T 4a8p_A 220 GADFLYTD 227 (355)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEec
Confidence 99999963
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=89.91 E-value=0.37 Score=46.75 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=57.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
.| .+|.|+|.|.+|...++-++.. |.+|++.. +++..+.+++.|.... ..+.+++-...|+||-++..
T Consensus 142 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~--~~~~~~~~~~lGa~~v---~~d~~~v~~g~Dvv~d~~g~ 209 (315)
T 3goh_A 142 KQ-REVLIVGFGAVNNLLTQMLNNA------GYVVDLVS--ASLSQALAAKRGVRHL---YREPSQVTQKYFAIFDAVNS 209 (315)
T ss_dssp SC-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEC--SSCCHHHHHHHTEEEE---ESSGGGCCSCEEEEECC---
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEE--ChhhHHHHHHcCCCEE---EcCHHHhCCCccEEEECCCc
Confidence 57 8999999999999999999988 88776555 4556788899997531 22222222467999988875
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEec
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
... .+....++++-.++..+
T Consensus 210 ~~~----~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 210 QNA----AALVPSLKANGHIICIQ 229 (315)
T ss_dssp --------TTGGGEEEEEEEEEEC
T ss_pred hhH----HHHHHHhcCCCEEEEEe
Confidence 432 34455666766555443
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.85 E-value=0.98 Score=44.97 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=59.4
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHH-hhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc-----cCC
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSD 180 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrd-s~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~-----~AD 180 (462)
+| .+|.|+| .|.+|...++-++. . |.+|++.. .+++..+.+++.|.... +. ..+..+.+. ..|
T Consensus 171 ~g-~~VlV~Ga~G~vG~~a~qlak~~~------g~~Vi~~~-~~~~~~~~~~~lGad~vi~~-~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AA-PAILIVGGAGGVGSIAVQIARQRT------DLTVIATA-SRPETQEWVKSLGAHHVIDH-SKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SE-EEEEEESTTSHHHHHHHHHHHHHC------CSEEEEEC-SSHHHHHHHHHTTCSEEECT-TSCHHHHHHTTCSCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHhc------CCEEEEEe-CCHHHHHHHHHcCCCEEEeC-CCCHHHHHHHhcCCCce
Confidence 57 8999999 99999999998886 5 66766544 44556788888886321 11 123333332 579
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+||-++... ..+++....++++-.++..
T Consensus 242 vvid~~g~~---~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 242 FVFSTTHTD---KHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEECSCHH---HHHHHHHHHSCTTCEEEEC
T ss_pred EEEECCCch---hhHHHHHHHhcCCCEEEEE
Confidence 999888743 2344555567776665544
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=89.85 E-value=1.6 Score=45.58 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=45.9
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 110 gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
+ |||.|.| .|.+|.+++..|.+. |++|++..|...+. ..+.. |- .....++++++|+||.+..
T Consensus 147 ~-m~VLVTGatG~IG~~l~~~L~~~------G~~V~~l~R~~~~~------~~v~~-d~-~~~~~~~l~~~D~Vih~A~ 210 (516)
T 3oh8_A 147 P-LTVAITGSRGLVGRALTAQLQTG------GHEVIQLVRKEPKP------GKRFW-DP-LNPASDLLDGADVLVHLAG 210 (516)
T ss_dssp C-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESSSCCT------TCEEC-CT-TSCCTTTTTTCSEEEECCC
T ss_pred C-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCCCc------cceee-cc-cchhHHhcCCCCEEEECCC
Confidence 5 8999999 699999999999999 99988777764431 11221 11 1234567889999998764
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=89.82 E-value=1.3 Score=43.75 Aligned_cols=92 Identities=9% Similarity=0.007 Sum_probs=56.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceecCCCc-----CCHhhhh------
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTL-----GDIYETI------ 176 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~-----~~~~eav------ 176 (462)
+| .+|.|+|.|.+|...++-++.. |.+ |++. +.+++..+.+++.+-...+-.. .+..+.+
T Consensus 179 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~-~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 179 LG-DPVLICGAGPIGLITMLCAKAA------GACPLVIT-DIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEE-ESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCC
Confidence 57 8999999999999999999988 886 5544 4445556777765311000000 1112222
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 177 ~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
...|+||-++.... .++.....++++-.++..
T Consensus 251 ~g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 251 IEPAVALECTGVES---SIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp CCCSEEEECSCCHH---HHHHHHHHSCTTCEEEEC
T ss_pred CCCCEEEECCCChH---HHHHHHHHhcCCCEEEEE
Confidence 25799999887542 344445567776665544
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.44 Score=44.69 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=32.9
Q ss_pred cccCCCCEEEEEcc-cc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCc
Q 012479 106 DAFNGINQIGVIGW-GS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~ 151 (462)
..++| |++.|.|. |. +|.++++.|.+. |.+|++..|...
T Consensus 18 ~~l~~-k~vlITGasg~GIG~~~a~~l~~~------G~~V~~~~r~~~ 58 (266)
T 3o38_A 18 GLLKG-KVVLVTAAAGTGIGSTTARRALLE------GADVVISDYHER 58 (266)
T ss_dssp STTTT-CEEEESSCSSSSHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHC------CCEEEEecCCHH
Confidence 45788 99999998 85 999999999999 999887776543
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=89.75 E-value=0.69 Score=48.77 Aligned_cols=91 Identities=12% Similarity=0.217 Sum_probs=64.5
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G----------~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| +||+|.|+- +-...++..|.+. |.+|.+.+..-.. . .++.. ..+.++++
T Consensus 350 ~~~~-~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~------g~~V~~~DP~~~~-~-----~~~~~----~~~~~~~~ 412 (478)
T 3g79_A 350 KMDG-SKVAMLGWAFIKDSDDARNTPSEPYRDLCLKA------GASVMVHDPYVVN-Y-----PGVEI----SDNLEEVV 412 (478)
T ss_dssp CSTT-CEEEEECSSSSTTCSCCTTCTHHHHHHHHHHH------TCEEEEECSSCCC-B-----TTBCE----ESCHHHHH
T ss_pred CCCC-CEEEEEeeecCCCCcchhcCcHHHHHHHHHHC------CCEEEEECCCccc-c-----cCcce----ecCHHHHH
Confidence 4688 999999973 3467888888888 9888776543221 1 11221 35788999
Q ss_pred ccCCeEEEeecchhHHH-HHHHHHhcCC-CCcEEEEeccc
Q 012479 177 SGSDLVLLLISDAAQAD-NYEKIFSCMK-PNSILGLSHGF 214 (462)
Q Consensus 177 ~~ADvViLavpd~a~~~-vl~eI~~~Lk-~gaiL~~a~G~ 214 (462)
++||+|+++|.-....+ -++.+...|+ +..+|.|.-++
T Consensus 413 ~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~~i~D~rn~ 452 (478)
T 3g79_A 413 RNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNV 452 (478)
T ss_dssp TTCSEEEECSCCHHHHSCCHHHHHHHHCCSSCEEEESSSC
T ss_pred hcCCEEEEecCCHHHHhhhHHHHHHHhccCCCEEEECCCC
Confidence 99999999998766653 2456777777 36788887765
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.74 E-value=0.45 Score=46.33 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=56.4
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee-cCCCcCCHhhhh------ccCC
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETI------SGSD 180 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~-~d~~~~~~~eav------~~AD 180 (462)
.| ++|.|+| .|.+|.+.++.++.. |.+|++..++ .+..+.+++.|... .|....+..+.+ ...|
T Consensus 140 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 140 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCce
Confidence 46 8999999 799999999999988 8887766554 44466666666521 011111222222 1468
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+||.++... .++...+.++++-.++..
T Consensus 212 ~vi~~~g~~----~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 212 VVYDSVGRD----TWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp EEEECSCGG----GHHHHHHTEEEEEEEEEC
T ss_pred EEEECCchH----HHHHHHHHhcCCCEEEEE
Confidence 888888733 344445556665554444
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=0.34 Score=47.92 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=28.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r 148 (462)
||||+|||-|..|..++..+++. |+++++.+.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~------G~~vv~vd~ 32 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKA------GMKVVLVDK 32 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeC
Confidence 69999999999999999999999 998876654
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=89.45 E-value=1.6 Score=37.55 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=55.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----Cce---ecCCCcCCHhhhh----c
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFT---EENGTLGDIYETI----S 177 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~---~~d~~~~~~~eav----~ 177 (462)
++ ++|.-||+|. | .++..+.+.. .+.+ +++.+.++...+.|++. |+. .. ..+..+.+ .
T Consensus 25 ~~-~~vldiG~G~-G-~~~~~l~~~~----~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~---~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 25 PH-ETLWDIGGGS-G-SIAIEWLRST----PQTT-AVCFEISEERRERILSNAINLGVSDRIAV---QQGAPRAFDDVPD 93 (178)
T ss_dssp TT-EEEEEESTTT-T-HHHHHHHTTS----SSEE-EEEECSCHHHHHHHHHHHHTTTCTTSEEE---ECCTTGGGGGCCS
T ss_pred CC-CeEEEeCCCC-C-HHHHHHHHHC----CCCe-EEEEeCCHHHHHHHHHHHHHhCCCCCEEE---ecchHhhhhccCC
Confidence 45 7999999998 3 3444444431 0334 46777777666666642 321 10 12222222 5
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
..|+|++.-+... ..+++++...|+||..+.+.
T Consensus 94 ~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~ 126 (178)
T 3hm2_A 94 NPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVAN 126 (178)
T ss_dssp CCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEE
T ss_pred CCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEE
Confidence 6899997766544 67888999999998876543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=0.88 Score=42.98 Aligned_cols=90 Identities=17% Similarity=0.137 Sum_probs=60.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH----cCc--eecCCCcCCHhhhh--ccCC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF--TEENGTLGDIYETI--SGSD 180 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~--~~~d~~~~~~~eav--~~AD 180 (462)
++ ++|.-||+|.-. ++..+.+. |.+ +++.+.++...+.|++ .|. .. ...+..+.+ ...|
T Consensus 120 ~~-~~VLDiGcG~G~--l~~~la~~------g~~-v~gvDi~~~~v~~a~~n~~~~~~~v~~---~~~d~~~~~~~~~fD 186 (254)
T 2nxc_A 120 PG-DKVLDLGTGSGV--LAIAAEKL------GGK-ALGVDIDPMVLPQAEANAKRNGVRPRF---LEGSLEAALPFGPFD 186 (254)
T ss_dssp TT-CEEEEETCTTSH--HHHHHHHT------TCE-EEEEESCGGGHHHHHHHHHHTTCCCEE---EESCHHHHGGGCCEE
T ss_pred CC-CEEEEecCCCcH--HHHHHHHh------CCe-EEEEECCHHHHHHHHHHHHHcCCcEEE---EECChhhcCcCCCCC
Confidence 46 899999999933 44456666 664 4677776666666655 342 21 023454433 3579
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+|+...+......+++++...|+||-.+.++
T Consensus 187 ~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 187 LLVANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp EEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCcHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9998777666778888999999998876654
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=1.6 Score=43.22 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=46.5
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH-HHHHH-cCceecCCC-cCC---HhhhhccCCeEEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARA-AGFTEENGT-LGD---IYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~-~~A~~-~G~~~~d~~-~~~---~~eav~~ADvViL 184 (462)
|+|.|.| .|.+|.++++.|.+. |++|++..|+.++.. +.... .++...... ..+ ..++++++|+||.
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~ 79 (352)
T 1xgk_A 6 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 79 (352)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence 7899999 599999999999988 888887777644321 11111 133211111 122 4567889999997
Q ss_pred eecc
Q 012479 185 LISD 188 (462)
Q Consensus 185 avpd 188 (462)
+...
T Consensus 80 ~a~~ 83 (352)
T 1xgk_A 80 NTTS 83 (352)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7643
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=89.38 E-value=0.23 Score=50.72 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=53.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc---EEEEEecC--CchhHHHHHHcC--ceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRK--GSRSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~--~~~s~~~A~~~G--~~~~d~~~~~~~eav~~ADvVi 183 (462)
.||+||| .|..|.-+.+-|.+. ++ ++...... ..+... -.| .... ..+ .+.++++|+||
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~------~~p~~el~~~as~~saG~~~~---~~~~~~~~~---~~~-~~~~~~~Dvvf 69 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASARSAGKSLK---FKDQDITIE---ETT-ETAFEGVDIAL 69 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CCCEEEEEEEECTTTTTCEEE---ETTEEEEEE---ECC-TTTTTTCSEEE
T ss_pred cEEEEECCCChHHHHHHHHHhcC------CCCcEEEEEEEccccCCCcce---ecCCCceEe---eCC-HHHhcCCCEEE
Confidence 6899999 899999999887765 44 22222211 111111 011 1110 012 23467899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+|+|.....+..+.+. +.|..++|.++
T Consensus 70 ~a~~~~~s~~~a~~~~---~~G~~vIDlSa 96 (366)
T 3pwk_A 70 FSAGSSTSAKYAPYAV---KAGVVVVDNTS 96 (366)
T ss_dssp ECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred ECCChHhHHHHHHHHH---HCCCEEEEcCC
Confidence 9999888887777654 45777777766
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.34 E-value=1.6 Score=45.67 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=65.8
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh--HHHHHH-cC-------ceecC
Q 012479 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARA-AG-------FTEEN 166 (462)
Q Consensus 107 ~l~gikkIgIIG~----------G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s--~~~A~~-~G-------~~~~d 166 (462)
.++| ++|+|.|+ .+-...++..|.+. |.+|.+.+..-... .....+ .+ +..
T Consensus 332 ~~~~-~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~------g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (481)
T 2o3j_A 332 TVTD-KKIAIFGFAFKKNTGDTRESSAIHVIKHLMEE------HAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITV-- 402 (481)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEE--
T ss_pred ccCC-CeEEEEeeeeCCCCCccccChHHHHHHHHHHC------CCEEEEECCCCCchhhHHHHHhhhccccccCceee--
Confidence 4688 99999997 35667778888877 88887765432211 112221 11 222
Q ss_pred CCcCCHhhhhccCCeEEEeecchhHHHH-HHHHHhcCCCCcEEEEeccc
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~~~v-l~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.+..|++++||+|+++|.-.....+ ++++...|+...+|.|.-++
T Consensus 403 --~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~ 449 (481)
T 2o3j_A 403 --ESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLI 449 (481)
T ss_dssp --ESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSC
T ss_pred --cCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCC
Confidence 35778899999999999997766543 55677778776678887765
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=89.24 E-value=1.6 Score=43.88 Aligned_cols=88 Identities=14% Similarity=0.097 Sum_probs=54.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC-------------------chhHH---HHHHc-
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARAA- 160 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~-------------------~~s~~---~A~~~- 160 (462)
...|++ .+|.|||+|-.|..++++|..+ |+ ++.+.+... .+... ...+.
T Consensus 31 q~~L~~-~~VlivG~GGlG~~ia~~La~~------Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 31 QKRLRA-SRVLLVGLKGLGAEIAKNLILA------GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 467788 9999999999999999999998 77 555553210 11111 11111
Q ss_pred -Cceec--CCCc-CCHhhhhccCCeEEEeecchhHHHHHHHHH
Q 012479 161 -GFTEE--NGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (462)
Q Consensus 161 -G~~~~--d~~~-~~~~eav~~ADvViLavpd~a~~~vl~eI~ 199 (462)
++... .... ....+.+++.|+||.++-+......+.+..
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~ 146 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQIC 146 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 22110 0001 123567889999999987666655565543
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=89.11 E-value=1.7 Score=42.83 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=60.0
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCch---hHHHHHHcCceec-CCC---cCCHhhhhc---
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEE-NGT---LGDIYETIS--- 177 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~---s~~~A~~~G~~~~-d~~---~~~~~eav~--- 177 (462)
.| .+|.|+|. |.+|...++-++.. |.++++..+..++ ..+.+++.|.... +.. ..+..+...
T Consensus 167 ~g-~~VlV~Ga~G~vG~~aiqlak~~------Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~ 239 (357)
T 1zsy_A 167 PG-DSVIQNASNSGVGQAVIQIAAAL------GLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMP 239 (357)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSC
T ss_pred CC-CEEEEeCCcCHHHHHHHHHHHHc------CCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCC
Confidence 56 89999998 99999999998888 8877766654332 3567788886420 000 011122222
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
..|+||-++..... .+....++++-.++..++
T Consensus 240 ~~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G~ 271 (357)
T 1zsy_A 240 QPRLALNCVGGKSS----TELLRQLARGGTMVTYGG 271 (357)
T ss_dssp CCSEEEESSCHHHH----HHHHTTSCTTCEEEECCC
T ss_pred CceEEEECCCcHHH----HHHHHhhCCCCEEEEEec
Confidence 37999998875433 234567787766665543
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=88.99 E-value=0.51 Score=48.82 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=60.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC-------c----hhHHHHHHcCceecCCCcCCHhh
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------S----RSFAEARAAGFTEENGTLGDIYE 174 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~-------~----~s~~~A~~~G~~~~d~~~~~~~e 174 (462)
.++. .||.|+|.|.-|.++|+-|... |. +|++.++++ . -....|..... .....+++|
T Consensus 185 ~l~d-~kVVi~GAGaAG~~iA~ll~~~------Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~---~~~~~~L~e 254 (398)
T 2a9f_A 185 SLDE-VSIVVNGGGSAGLSITRKLLAA------GATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR---EFKSGTLED 254 (398)
T ss_dssp CTTS-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC---TTCCCSCSH
T ss_pred CCCc-cEEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcccCCccccchHHHHHHhhccCc---ccchhhHHH
Confidence 4445 6999999999999999999988 88 888877652 1 01122332111 111357899
Q ss_pred hhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 175 av~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+++++|++|=+..|... =+++...|+++.+|...
T Consensus 255 av~~ADV~IG~Sapgl~---T~EmVk~Ma~~pIIfal 288 (398)
T 2a9f_A 255 ALEGADIFIGVSAPGVL---KAEWISKMAARPVIFAM 288 (398)
T ss_dssp HHHTTCSEEECCSTTCC---CHHHHHTSCSSCEEEEC
T ss_pred HhccCCEEEecCCCCCC---CHHHHHhhCCCCEEEEC
Confidence 99999998876544322 12555667888877644
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=88.97 E-value=0.91 Score=38.44 Aligned_cols=92 Identities=18% Similarity=0.122 Sum_probs=55.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd~ 189 (462)
+++.|||.|..|..++..|++. .|++++...+.+...... .-.|+.+. + ..+..+.++ +.|.|++++|..
T Consensus 5 ~~vlIiGaG~~g~~l~~~l~~~-----~g~~vvg~~d~~~~~~g~-~i~g~pV~-g-~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 5 KKVLIYGAGSAGLQLANMLRQG-----KEFHPIAFIDDDRKKHKT-TMQGITIY-R-PKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEECSCGGGTTC-EETTEEEE-C-GGGHHHHHHHHTCCEEEECCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CCcEEEEEEECCcccCCC-EecCeEEE-C-HHHHHHHHHHCCCCEEEEeCCCC
Confidence 7899999999999999999875 167776555554321110 11354431 1 234445443 578999999965
Q ss_pred hH---HHHHHHHHhcCCCCcEEEEeccc
Q 012479 190 AQ---ADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 190 a~---~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.. .+++..+. +.|.-+.+...+
T Consensus 77 ~~~~~~~i~~~l~---~~gv~v~~vP~~ 101 (141)
T 3nkl_A 77 SQVQKKVIIESLA---KLHVEVLTIPNL 101 (141)
T ss_dssp CHHHHHHHHHHHH---TTTCEEEECCCH
T ss_pred CHHHHHHHHHHHH---HcCCeEEECCCH
Confidence 43 23433332 345556666554
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=88.94 E-value=0.57 Score=45.74 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=56.3
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav------~~AD 180 (462)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..++ ....+.+++.|.... |....+..+.+ ...|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~Vi~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 145 PG-DYVLIHAAAGGMGHIMVPWARHL------GATVIGTVST-EEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp TT-CEEEETTTTSTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCe
Confidence 46 89999995 99999999999988 8887766554 444566666664210 11111222222 2468
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+||.++... .++.....++++-.++..
T Consensus 217 ~vi~~~g~~----~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 217 VVYDSIGKD----TLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp EEEECSCTT----THHHHHHTEEEEEEEEEC
T ss_pred EEEECCcHH----HHHHHHHhhccCCEEEEE
Confidence 888887752 344445556665554444
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=88.94 E-value=0.75 Score=48.11 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=29.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi 144 (462)
..++| ++|+|.|+|++|...|+-|.+. |.+|+
T Consensus 231 ~~l~g-~~vaVqGfGnVG~~~a~~L~e~------GakvV 262 (440)
T 3aog_A 231 LQVEG-ARVAIQGFGNVGNAAARAFHDH------GARVV 262 (440)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEE
T ss_pred CCccC-CEEEEeccCHHHHHHHHHHHHC------CCEEE
Confidence 46889 9999999999999999999988 88776
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.83 E-value=2.4 Score=42.07 Aligned_cols=94 Identities=15% Similarity=0.153 Sum_probs=60.7
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh---ccCCeEE
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI---SGSDLVL 183 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav---~~ADvVi 183 (462)
+| ++|.|+| .|.+|...++-++.. |.+|++.. . ++..+.+++.|.... |....+..+.+ ...|+||
T Consensus 183 ~g-~~VlV~Ga~G~vG~~~~qla~~~------Ga~Vi~~~-~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vi 253 (375)
T 2vn8_A 183 TG-KRVLILGASGGVGTFAIQVMKAW------DAHVTAVC-S-QDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFIL 253 (375)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEE-C-GGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEe-C-hHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEE
Confidence 56 8999999 799999999999988 88876554 3 355778888886320 11112233323 3578888
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
-++.... ..+......++++-.++..++
T Consensus 254 d~~g~~~--~~~~~~~~~l~~~G~iv~~g~ 281 (375)
T 2vn8_A 254 DNVGGST--ETWAPDFLKKWSGATYVTLVT 281 (375)
T ss_dssp ESSCTTH--HHHGGGGBCSSSCCEEEESCC
T ss_pred ECCCChh--hhhHHHHHhhcCCcEEEEeCC
Confidence 8887542 123444566777766655544
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=0.23 Score=51.13 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=47.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh-HHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+++ |+|.|||.|-.|.+.|+-|.+. |++|++.+.+.... ..... .|+....+. ...+.++++|+||+..
T Consensus 3 ~~~-~~v~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~--~~~~~~~~~d~vV~s~ 72 (439)
T 2x5o_A 3 YQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLP-EAVERHTGS--LNDEWLMAADLIVASP 72 (439)
T ss_dssp CTT-CCEEEECCHHHHHHHHHHHHTT------TCCCEEEESSSSCTTGGGSC-TTSCEEESS--CCHHHHHTCSEEEECT
T ss_pred CCC-CEEEEEeecHHHHHHHHHHHhC------CCEEEEEECCCCcchhHHhh-CCCEEEECC--CcHHHhccCCEEEeCC
Confidence 577 9999999999999999999888 99887776543221 11122 466531011 1356677899999863
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=88.79 E-value=0.25 Score=49.60 Aligned_cols=66 Identities=23% Similarity=0.196 Sum_probs=42.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCC---HhhhhccCCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvVi 183 (462)
+.+ ++|+|||.|..|..+++.+++. |+++++.+... ......+ +.+... ...| +.++++++|+|.
T Consensus 10 ~~~-~~IlIlG~G~lg~~la~aa~~l------G~~viv~d~~~~~p~~~~a--d~~~~~--~~~d~~~l~~~~~~~dvi~ 78 (377)
T 3orq_A 10 KFG-ATIGIIGGGQLGKMMAQSAQKM------GYKVVVLDPSEDCPCRYVA--HEFIQA--KYDDEKALNQLGQKCDVIT 78 (377)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCTTCTTGGGS--SEEEEC--CTTCHHHHHHHHHHCSEEE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCChhhhhC--CEEEEC--CCCCHHHHHHHHHhCCcce
Confidence 456 9999999999999999999999 99887765432 2211111 222210 1222 345677889875
Q ss_pred E
Q 012479 184 L 184 (462)
Q Consensus 184 L 184 (462)
.
T Consensus 79 ~ 79 (377)
T 3orq_A 79 Y 79 (377)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=88.77 E-value=2.7 Score=39.55 Aligned_cols=89 Identities=12% Similarity=0.091 Sum_probs=56.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCchhHHHHHHc----C----ceecCCCcCCHhhhhccC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAA----G----FTEENGTLGDIYETISGS 179 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G----~~~~d~~~~~~~eav~~A 179 (462)
+| .+|.-||+|.-+.+ ..|. .. |.+| ++.+.++...+.|++. | +... ..+..+.-...
T Consensus 64 ~~-~~vLDiGcG~G~~~--~~l~~~~------~~~v-~gvd~s~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~f 130 (287)
T 1kpg_A 64 PG-MTLLDVGCGWGATM--MRAVEKY------DVNV-VGLTLSKNQANHVQQLVANSENLRSKRVL---LAGWEQFDEPV 130 (287)
T ss_dssp TT-CEEEEETCTTSHHH--HHHHHHH------CCEE-EEEESCHHHHHHHHHHHHTCCCCSCEEEE---ESCGGGCCCCC
T ss_pred Cc-CEEEEECCcccHHH--HHHHHHc------CCEE-EEEECCHHHHHHHHHHHHhcCCCCCeEEE---ECChhhCCCCe
Confidence 45 79999999984433 3333 44 5554 5677666656666542 2 2210 23444433668
Q ss_pred CeEEEe-----ecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 180 DLVLLL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 180 DvViLa-----vpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
|+|+.. +++.....+++++...||||-.+.+
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 166 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 166 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEE
Confidence 999876 4545667889999999999886543
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.69 E-value=1.6 Score=41.73 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=44.2
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhH---HHHHHcC-ceecCCCcCC---Hhhhhcc--C
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF---AEARAAG-FTEENGTLGD---IYETISG--S 179 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~---~~A~~~G-~~~~d~~~~~---~~eav~~--A 179 (462)
||+|.|.| .|.+|.++++.|.+. |.+|++..|.. .... +.....+ +......+.+ ..+++++ .
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQ------GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhC------CCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 57899999 699999999999998 99887766532 1111 1111122 2110011223 3456777 9
Q ss_pred CeEEEeec
Q 012479 180 DLVLLLIS 187 (462)
Q Consensus 180 DvViLavp 187 (462)
|+||.+..
T Consensus 75 d~vih~A~ 82 (347)
T 1orr_A 75 DSCFHLAG 82 (347)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 99998865
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=88.66 E-value=1.1 Score=38.81 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=58.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH----cCc----eecCCCcCCHhhhh---c
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF----TEENGTLGDIYETI---S 177 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~----~~~d~~~~~~~eav---~ 177 (462)
++ ++|.-||+|. | .++..+.+. +.+ +++.+.++...+.+++ .|. ... ..+..+.+ .
T Consensus 33 ~~-~~vldiG~G~-G-~~~~~l~~~------~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~---~~d~~~~~~~~~ 99 (192)
T 1l3i_A 33 KN-DVAVDVGCGT-G-GVTLELAGR------VRR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLM---EGDAPEALCKIP 99 (192)
T ss_dssp TT-CEEEEESCTT-S-HHHHHHHTT------SSE-EEEEESCHHHHHHHHHHHHHTTCCTTEEEE---ESCHHHHHTTSC
T ss_pred CC-CEEEEECCCC-C-HHHHHHHHh------cCE-EEEEECCHHHHHHHHHHHHHcCCCcceEEE---ecCHHHhcccCC
Confidence 55 8999999998 3 445555555 534 4566666666666655 232 210 23444433 3
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
..|+|+..-+......+++++...|+||..+.+.
T Consensus 100 ~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 100 DIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp CEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5799998776566788899999999998765443
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=0.69 Score=45.26 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-HcCcee-cCCCc-CCHhhhhc-----cC
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTE-ENGTL-GDIYETIS-----GS 179 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~-~d~~~-~~~~eav~-----~A 179 (462)
+| ++|.|+|. |.+|.+.++.++.. |.+|++..++ ....+.++ +.|... .|-.. .+..+.++ ..
T Consensus 155 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EG-ETVYVSAASGAVGQLVGQLAKMM------GCYVVGSAGS-KEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCC
Confidence 56 89999997 99999999999988 8887665554 44456666 567521 01110 12333332 47
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|+||-++... .++.....++++-.++..+
T Consensus 227 d~vi~~~g~~----~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 227 DIYFENVGGK----MLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEEEESSCHH----HHHHHHTTEEEEEEEEECC
T ss_pred cEEEECCCHH----HHHHHHHHHhcCCEEEEEc
Confidence 9999888642 4556666777766655543
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=88.32 E-value=0.19 Score=51.85 Aligned_cols=79 Identities=15% Similarity=0.062 Sum_probs=55.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc---EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
.||.|||. |..|..-+.-++.- |. +|.+.+++. ...|-. .+.+.++|+||.++.
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~l------Ga~~~~V~v~D~~~-------~~~g~~---------~~~i~~aDivIn~vl 272 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKV------GIPDANILKWDIKE-------TSRGGP---------FDEIPQADIFINCIY 272 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCGGGEEEECHHH-------HTTCSC---------CTHHHHSSEEEECCC
T ss_pred CeEEEEcCCCHHHHHHHHHHHhC------CCCcCceEEeeccc-------cccCCc---------hhhHhhCCEEEECcC
Confidence 58999999 99999988888776 86 777765531 111322 145779999999998
Q ss_pred chh-HHHHH-HHHHhcC-CCCcEEEEec
Q 012479 188 DAA-QADNY-EKIFSCM-KPNSILGLSH 212 (462)
Q Consensus 188 d~a-~~~vl-~eI~~~L-k~gaiL~~a~ 212 (462)
-.. ...++ ++....| |+|.+|+|++
T Consensus 273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 273 LSKPIAPFTNMEKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp CCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred cCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence 422 12333 3566778 9999999885
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=88.32 E-value=1.3 Score=44.69 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=30.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
+.|++ ++|.|||+|-.|..++++|... |+ ++.+.+
T Consensus 30 ~kL~~-~~VlIvGaGGlGs~va~~La~a------GVg~ItlvD 65 (340)
T 3rui_A 30 DIIKN-TKVLLLGAGTLGCYVSRALIAW------GVRKITFVD 65 (340)
T ss_dssp HHHHT-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEEC
T ss_pred HHHhC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEec
Confidence 57888 9999999999999999999998 77 455543
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=88.31 E-value=0.68 Score=48.71 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=39.7
Q ss_pred CEEEEEcccchHHH--HHHHHHHhhhhhcCCcEEEEEecCCchhHHH--------HHHcCc--eecCCCcCCHhhhhccC
Q 012479 112 NQIGVIGWGSQGPA--QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--------ARAAGF--TEENGTLGDIYETISGS 179 (462)
Q Consensus 112 kkIgIIG~G~mG~A--iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~--------A~~~G~--~~~d~~~~~~~eav~~A 179 (462)
+||+|||.|+.|.+ +...|....+=.+.+.+++. .|.++...+. +...|. .. ..+.|..|++++|
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L-~Di~~~rl~~~~~~~~~~~~~~~~~~~i--~~t~d~~eAl~gA 77 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYL-MDVHERRLNASYILARKYVEELNSPVKV--VKTESLDEAIEGA 77 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEE-ECSCHHHHHHHHHHHHHHHHHHTCCCEE--EEESCHHHHHTTC
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEE-ECCCHHHHHHHHHHHHHHHHHcCCCeEE--EEeCCHHHHhCCC
Confidence 58999999998755 33334332110111224544 4444422211 122332 21 1246889999999
Q ss_pred CeEEEee
Q 012479 180 DLVLLLI 186 (462)
Q Consensus 180 DvViLav 186 (462)
|+||+.+
T Consensus 78 D~Vi~~~ 84 (477)
T 3u95_A 78 DFIINTA 84 (477)
T ss_dssp SEEEECC
T ss_pred CEEEECc
Confidence 9999986
|
| >3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
Probab=88.23 E-value=1.1 Score=44.09 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=43.9
Q ss_pred CcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh
Q 012479 97 GRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 97 ~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav 176 (462)
..+.|.......+| +||++||+- .....+++. +.++.|..++.. .|... ....++++
T Consensus 128 ~~d~~~~~~~~~~g-~kV~vIG~f----P~i~~~~~~------~~~l~V~E~~p~--------~g~~p----~~~~~~~l 184 (270)
T 3l5o_A 128 MNDPFIMSQNEVKG-KKVGVVGHF----PHLESLLEP------ICDLSILEWSPE--------EGDYP----LPASEFIL 184 (270)
T ss_dssp -CCHHHHTTTTTTT-SEEEEESCC----TTHHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHHHHG
T ss_pred ccCchhhhhcccCC-CEEEEECCc----hhHHHHHhc------CCCEEEEECCCC--------CCCCC----hhHHHHhh
Confidence 34456666677889 999999974 345566766 678888777532 23332 23455688
Q ss_pred ccCCeEEEe
Q 012479 177 SGSDLVLLL 185 (462)
Q Consensus 177 ~~ADvViLa 185 (462)
++||+||+.
T Consensus 185 p~~D~viiT 193 (270)
T 3l5o_A 185 PECDYVYIT 193 (270)
T ss_dssp GGCSEEEEE
T ss_pred ccCCEEEEE
Confidence 999998875
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=88.20 E-value=1.1 Score=45.19 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEec
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r 148 (462)
.+.|++ .+|.|||+|-.|..++.+|..+ |+ ++.+.++
T Consensus 113 q~~L~~-~~VlvvG~GglGs~va~~La~a------Gvg~i~lvD~ 150 (353)
T 3h5n_A 113 QDKLKN-AKVVILGCGGIGNHVSVILATS------GIGEIILIDN 150 (353)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEEC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHhC------CCCeEEEECC
Confidence 467888 9999999999999999999998 76 5555543
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=88.12 E-value=0.31 Score=49.31 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=53.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc---EEEEEecCC--chhHHHHHHcCceecCCCcCC-HhhhhccCCeEEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG--SRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~~--~~s~~~A~~~G~~~~d~~~~~-~~eav~~ADvViL 184 (462)
.||+||| .|..|.-+.+-|.+. .+ ++....... .+.... .|... .+.+ ..+.++++|+||+
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h------~fp~~el~~~~s~~~aG~~~~~---~~~~~---~~~~~~~~~~~~~Dvvf~ 69 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDER------DFPASAVRFFASARSQGRKLAF---RGQEI---EVEDAETADPSGLDIALF 69 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TCCEEEEEEEECTTTSSCEEEE---TTEEE---EEEETTTSCCTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCceEEEEEECcccCCCceee---cCCce---EEEeCCHHHhccCCEEEE
Confidence 6899999 799999999877765 33 333222111 111110 11100 0111 1234678999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|+|.....+..+.+. +.|..|++.++
T Consensus 70 a~~~~~s~~~a~~~~---~~G~~vID~Sa 95 (344)
T 3tz6_A 70 SAGSAMSKVQAPRFA---AAGVTVIDNSS 95 (344)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CCChHHHHHHHHHHH---hCCCEEEECCC
Confidence 999988888877654 45777887776
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=88.08 E-value=0.45 Score=46.47 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=29.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
+||.|||.|.-|.+.|..|.+. |++|.|..+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~------G~~v~v~Er~ 33 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKH------GIKVTIYERN 33 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 7899999999999999999999 9999888653
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.05 E-value=1.1 Score=44.47 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=56.4
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh----c--cCC
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----S--GSD 180 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav----~--~AD 180 (462)
.| ++|.|+|. |.+|.+.++.++.. |.+|++..+. ++..+.+++.|.... |....+..+.+ . ..|
T Consensus 170 ~g-~~vlV~GasggiG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D 241 (351)
T 1yb5_A 170 AG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 241 (351)
T ss_dssp TT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred Cc-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCC-hhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcE
Confidence 46 89999998 99999999999988 8887666554 444567777775310 11111222222 1 478
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+||.++... .+.+....++++-.++..
T Consensus 242 ~vi~~~G~~----~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 242 IIIEMLANV----NLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp EEEESCHHH----HHHHHHHHEEEEEEEEEC
T ss_pred EEEECCChH----HHHHHHHhccCCCEEEEE
Confidence 888887643 234444555665444433
|
| >4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A | Back alignment and structure |
|---|
Probab=88.01 E-value=0.88 Score=45.37 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=51.3
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcCceecCCCcCCHhhhhccC
Q 012479 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (462)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~eav~~A 179 (462)
.++| .||++||= |++..|++..+..- . |.++.+...+ ++...+.+++.|.... .+.+++|++++|
T Consensus 148 ~l~g-lkva~vGD~~~~rva~Sl~~~~~~~-~----G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~a 219 (306)
T 4ekn_B 148 RIDG-IKIAFVGDLKYGRTVHSLVYALSLF-E----NVEMYFVSPKELRLPKDIIEDLKAKNIKFY--EKESLDDLDDDI 219 (306)
T ss_dssp CSTT-CEEEEESCTTTCHHHHHHHHHHHTS-S----SCEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCGGGCCTTC
T ss_pred CcCC-CEEEEEcCCCCCcHHHHHHHHHHhc-C----CCEEEEECCcccccCHHHHHHHHHcCCEEE--EEcCHHHHhcCC
Confidence 5789 99999997 58999999988652 0 6777765432 2334456677775421 146899999999
Q ss_pred CeEEEee
Q 012479 180 DLVLLLI 186 (462)
Q Consensus 180 DvViLav 186 (462)
|+|+...
T Consensus 220 Dvvy~~~ 226 (306)
T 4ekn_B 220 DVLYVTR 226 (306)
T ss_dssp SEEEECC
T ss_pred CEEEeCC
Confidence 9999753
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=87.97 E-value=1.4 Score=41.47 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=45.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---HhhhhccCCeEEEeec
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvViLavp 187 (462)
|||.|+| .|.+|.++++.|.+. .|.+|++..|+.++... ....++......+.+ ..++++++|+||.+..
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~-----~g~~V~~~~R~~~~~~~-~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN-----HIDHFHIGVRNVEKVPD-DWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT-----TCTTEEEEESSGGGSCG-GGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhC-----CCCcEEEEECCHHHHHH-hhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 5799999 599999999998864 15678777776443211 112343221111233 4567889999999876
Q ss_pred c
Q 012479 188 D 188 (462)
Q Consensus 188 d 188 (462)
.
T Consensus 75 ~ 75 (289)
T 3e48_A 75 I 75 (289)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=87.97 E-value=2.4 Score=41.57 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=59.1
Q ss_pred CEEEEE-cccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee-cCCCcCCHhhhh------ccCCeEE
Q 012479 112 NQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETI------SGSDLVL 183 (462)
Q Consensus 112 kkIgII-G~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~-~d~~~~~~~eav------~~ADvVi 183 (462)
++|.|. |.|.+|.+.++-++.. |.+|++..++ .+..+.+++.|... .+....+..+.+ ...|+||
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~------Ga~Vi~~~~~-~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vi 238 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEE------GFRPIVTVRR-DEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFL 238 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESC-GGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEE
Confidence 455444 8999999999999988 8887766554 44577888888631 011112333333 3689999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
-++..... ....+.++++-.++..+
T Consensus 239 d~~g~~~~----~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 239 DAVTGPLA----SAIFNAMPKRARWIIYG 263 (349)
T ss_dssp ESSCHHHH----HHHHHHSCTTCEEEECC
T ss_pred ECCCChhH----HHHHhhhcCCCEEEEEe
Confidence 99885443 44556777777666554
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=87.54 E-value=0.42 Score=47.93 Aligned_cols=69 Identities=7% Similarity=-0.082 Sum_probs=41.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc--E-----EEEEecCCc--hhHHHHHH--cC---ceecCCCcCCHhhhh
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-----VKVGLRKGS--RSFAEARA--AG---FTEENGTLGDIYETI 176 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~--~-----Vivg~r~~~--~s~~~A~~--~G---~~~~d~~~~~~~eav 176 (462)
+||+|+| .|.+|.+++..|... ++ + +++.+.... .....+.+ +. +...-....+..+++
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~------~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~ 77 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNG------SVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAF 77 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHT
T ss_pred eEEEEECCCCHHHHHHHHHHHhC------CCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHh
Confidence 6899999 899999999999876 44 2 444443321 12222221 11 110000024567889
Q ss_pred ccCCeEEEee
Q 012479 177 SGSDLVLLLI 186 (462)
Q Consensus 177 ~~ADvViLav 186 (462)
++||+||++-
T Consensus 78 ~daDvVvitA 87 (333)
T 5mdh_A 78 KDLDVAILVG 87 (333)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEeC
Confidence 9999999975
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=87.53 E-value=2.8 Score=37.99 Aligned_cols=89 Identities=15% Similarity=0.221 Sum_probs=55.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----Cce----ecCCCcCCHhhh---hc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFT----EENGTLGDIYET---IS 177 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~----~~d~~~~~~~ea---v~ 177 (462)
++ .+|.-||+|. | .++..|.+. +.+| ++.+.++...+.|++. |+. .. ..+..+. ..
T Consensus 55 ~~-~~vLDlGcG~-G-~~~~~la~~------~~~v-~~vD~s~~~~~~a~~~~~~~g~~~~v~~~---~~d~~~~~~~~~ 121 (204)
T 3njr_A 55 RG-ELLWDIGGGS-G-SVSVEWCLA------GGRA-ITIEPRADRIENIQKNIDTYGLSPRMRAV---QGTAPAALADLP 121 (204)
T ss_dssp TT-CEEEEETCTT-C-HHHHHHHHT------TCEE-EEEESCHHHHHHHHHHHHHTTCTTTEEEE---ESCTTGGGTTSC
T ss_pred CC-CEEEEecCCC-C-HHHHHHHHc------CCEE-EEEeCCHHHHHHHHHHHHHcCCCCCEEEE---eCchhhhcccCC
Confidence 45 8999999998 3 344455554 5555 5677666666655542 322 11 2333332 34
Q ss_pred cCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
..|+|++.... ... +++++...|+||-.+++..
T Consensus 122 ~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~ 154 (204)
T 3njr_A 122 LPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANA 154 (204)
T ss_dssp CCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEE
T ss_pred CCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEe
Confidence 68999976533 333 8889999999988765443
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=87.42 E-value=2.5 Score=44.29 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=63.9
Q ss_pred ccCCCCEEEEEccc----------chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-cC------------ce
Q 012479 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AG------------FT 163 (462)
Q Consensus 107 ~l~gikkIgIIG~G----------~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-~G------------~~ 163 (462)
.++| ++|+|.|+- +-...++..|.+. |.+|.+.+..-.. .+++ .| +.
T Consensus 325 ~~~~-~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~------g~~v~~~DP~~~~---~~~~~~~~~~~~~~~~~~~~~ 394 (478)
T 2y0c_A 325 DLTG-RTFAIWGLAFKPNTDDMREAPSRELIAELLSR------GARIAAYDPVAQE---EARRVIALDLADHPSWLERLS 394 (478)
T ss_dssp CCTT-CEEEEECCSSSSSCCCCTTCHHHHHHHHHHHT------TCEEEEECTTTHH---HHHHHHHHHTTTCHHHHTTEE
T ss_pred cCCC-CEEEEEecccCCCCCccccChHHHHHHHHHHC------CCEEEEECCCccH---HHHHhhcccccccccccccee
Confidence 4688 999999973 3556778888877 8888776554221 2221 22 33
Q ss_pred ecCCCcCCHhhhhccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEEeccc
Q 012479 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 164 ~~d~~~~~~~eav~~ADvViLavpd~a~~~-vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
. +.+..+++++||+|+++|.-..... -++.+...|+. .+|.|.-++
T Consensus 395 ~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~-~~i~D~r~~ 441 (478)
T 2y0c_A 395 F----VDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKT-PVIFDGRNL 441 (478)
T ss_dssp E----CSSHHHHTTTCSEEEECSCCGGGGSCCHHHHHTTCSS-CEEEESSCC
T ss_pred e----cCCHHHHHhCCCEEEEecCChHhhccCHHHHHhhcCC-CEEEECCCC
Confidence 2 4578899999999999999776554 24567666664 678888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 462 | ||||
| d1qmga2 | 226 | c.2.1.6 (A:82-307) Class II ketol-acid reductoisom | 1e-93 | |
| d1qmga1 | 288 | a.100.1.2 (A:308-595) Class II ketol-acid reductoi | 1e-77 | |
| d1np3a2 | 182 | c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer | 2e-41 | |
| d1np3a1 | 145 | a.100.1.2 (A:183-327) Class I ketol-acid reductois | 3e-29 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 280 bits (718), Expect = 1e-93
Identities = 190/226 (84%), Positives = 210/226 (92%)
Query: 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQA 127
+ DF++SVFKK+ ++L+ DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247
D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180
Query: 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATT
Sbjct: 181 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 288 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 241 bits (617), Expect = 1e-77
Identities = 146/169 (86%), Positives = 160/169 (94%)
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
LEQEY+SDIFGERGILLGAVHGIVE LFRR+TE+GM+EDLAYKNTVECITG+ISK IST+
Sbjct: 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTK 60
Query: 354 GMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEG 413
GMLA+YNS S E KK+F+ AYSASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEG
Sbjct: 61 GMLALYNSLSEEGKKDFQAAYSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEG 120
Query: 414 LPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
LPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQ+
Sbjct: 121 LPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQI 169
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 143 bits (362), Expect = 2e-41
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL+D S + V VGLR GS + A+A A G D+
Sbjct: 18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
++ +D+V++L D Q Y++ +K + L +HGF + + Q + ++
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVV---PRADLD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI + PK G +VR +V+G I A++QD G A NVAL ++ +G
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQDASGNAKNVALSYACGVGG 173
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} Length = 145 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 109 bits (274), Expect = 3e-29
Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 3/145 (2%)
Query: 295 EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQG 354
+ E +D+FGE+ +L G +V++ F E G ++AY + + I+ +
Sbjct: 2 KDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELKLIVDLMYEGGI 61
Query: 355 MLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGL 414
Y+ + + E+ + + + G + + G Y
Sbjct: 62 ANMNYSISNNAEYGEYVTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGAANYPSMTA 121
Query: 415 PAFPMGKIDQTRMWKVGERVRSTRP 439
+ ++GE++R+ P
Sbjct: 122 ---YRRNNAAHPIEQIGEKLRAMMP 143
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 462 | |||
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 100.0 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 100.0 | |
| d1qmga1 | 288 | Class II ketol-acid reductoisomerase {Spinach (Spi | 100.0 | |
| d1np3a1 | 145 | Class I ketol-acid reductoisomerase {Pseudomonas a | 100.0 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.85 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.83 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.82 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.81 | |
| d1qmga1 | 288 | Class II ketol-acid reductoisomerase {Spinach (Spi | 99.8 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.6 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.53 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.44 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.42 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.33 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.3 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.21 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.19 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.14 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.09 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.95 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.91 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.89 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.89 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.86 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.81 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.8 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.78 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.78 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.7 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.63 | |
| d1yqga1 | 111 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.63 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.58 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.57 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.53 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.51 | |
| d2ahra1 | 104 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.46 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.42 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.22 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.01 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.0 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.95 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.89 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.79 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.72 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.67 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.49 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.46 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.33 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.33 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.31 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.28 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.27 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.26 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.25 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.22 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.22 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.19 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.09 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.07 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.06 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.06 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.06 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.03 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.0 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.0 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.99 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.98 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.95 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.95 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.91 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.9 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 96.89 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.87 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.87 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.86 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.84 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.83 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.83 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 96.83 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.71 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.6 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.57 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.57 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.5 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.39 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.35 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.31 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.26 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.2 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.16 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.08 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.05 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.05 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 96.0 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.94 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 95.9 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 95.89 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.82 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 95.79 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 95.76 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.52 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.51 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.45 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.4 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.39 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 95.36 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.34 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.21 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.16 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 95.14 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.14 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.08 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.08 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.07 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.06 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.94 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 94.86 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.84 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.7 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.63 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 94.63 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.62 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.55 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 94.55 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.41 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.36 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 94.27 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.17 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.12 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 94.08 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 93.96 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 93.92 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 93.62 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 93.55 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 93.07 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 92.85 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.84 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.7 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 92.57 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.5 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.49 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.31 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 92.24 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 92.21 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 92.12 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 92.04 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 91.88 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 91.67 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.62 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 91.62 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 91.56 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 91.37 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 91.32 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 91.25 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 91.24 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 91.15 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 91.1 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 90.91 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 90.86 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 90.83 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 90.78 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 90.76 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 90.62 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 90.62 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 90.61 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 90.23 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.17 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.07 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 90.05 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 90.04 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 90.03 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 89.93 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 89.93 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.78 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 89.75 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.73 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.53 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 89.49 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 89.44 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 89.3 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 89.02 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 88.92 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 88.82 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.71 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 88.36 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 88.27 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 88.26 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 88.25 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 88.03 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 87.88 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 87.83 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 87.79 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 87.74 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 87.66 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 87.62 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 87.57 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 87.19 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 87.1 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 87.06 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 86.95 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 86.73 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 86.72 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 86.7 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 86.69 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 86.6 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 86.54 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 86.41 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 86.13 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 86.11 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 86.04 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 85.64 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 85.62 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 85.58 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 85.52 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 85.37 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 85.32 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 85.23 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 85.13 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 85.13 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 84.89 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 84.84 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 84.55 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 84.52 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 84.38 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 84.18 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 84.09 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 84.04 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 83.85 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 83.54 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 83.41 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 83.29 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 83.14 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 83.02 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 82.85 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 82.82 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 82.81 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 82.66 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 82.58 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 82.08 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 81.94 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 81.64 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 81.47 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 81.23 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 81.04 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 81.02 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 80.49 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 80.45 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 80.32 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 80.21 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 80.17 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=3.2e-58 Score=436.45 Aligned_cols=226 Identities=84% Similarity=1.310 Sum_probs=210.9
Q ss_pred CccccccccchhhhhhhhccccccceeecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEe
Q 012479 68 TPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (462)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~ 147 (462)
++++++||+++|.+++++|.|++|+|++++||+|++++++|||+|||+|||||+||+|||+|||||..+.++|++|+||+
T Consensus 1 ~~~~~~f~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGL 80 (226)
T d1qmga2 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGL 80 (226)
T ss_dssp CCSCCCCCCSSSCCEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCccccchheeeEEEEEeeCCceeEEEecccchhhhhHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999833333467899999
Q ss_pred cCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCC
Q 012479 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227 (462)
Q Consensus 148 r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p 227 (462)
|.++++|++|+++||.+.+.++.+++|++++||+|++++||+.|.++|++|.|+|++|++|.|+|||++++.+...+.+|
T Consensus 81 r~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p 160 (226)
T d1qmga2 81 RKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFP 160 (226)
T ss_dssp CTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCC
T ss_pred CCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccC
Confidence 99999999999999975455567899999999999999999999999999999999999999999999988765456689
Q ss_pred CCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccc
Q 012479 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293 (462)
Q Consensus 228 ~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viett 293 (462)
+|++|+||+||+|||.||++|++|+.++|.|+||+|+++||+|+++++++++|+++||+.+++|||
T Consensus 161 ~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD~sG~A~~~alayA~aIG~g~~~eTt 226 (226)
T d1qmga2 161 KNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226 (226)
T ss_dssp TTSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHTCSEEEECC
T ss_pred CCceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEECCCCcHHHHHHHHHHhCCCCceeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999986
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=3.3e-44 Score=330.08 Aligned_cols=169 Identities=36% Similarity=0.581 Sum_probs=161.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
.+.|++ |+|+|||||+||+++|+||||| |++|+||+|+++++|++|+++||. +.+++|++++||+|++
T Consensus 11 l~~ik~-k~IaViGYGsQG~AhAlNLrDS------G~~V~VGLr~gs~s~~~A~~~Gf~-----v~~~~eA~~~aDiim~ 78 (182)
T d1np3a2 11 LSIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLK-----VADVKTAVAAADVVMI 78 (182)
T ss_dssp HHHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCE-----EECHHHHHHTCSEEEE
T ss_pred hHHHCC-CEEEEEeeCcHhHHHHhhhhhc------CCCEEEEcCCCCccHHHHhhhccc-----cccHHHHhhhcCeeee
Confidence 468899 9999999999999999999999 999999999999999999999999 5899999999999999
Q ss_pred eecchhHHHHHH-HHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 185 avpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
++||+.|.++|+ +|.|+|++|++|.|+|||+|++. .+.||++++|+|++||+||+.||++|++| +|+|+++
T Consensus 79 L~PD~~q~~vy~~~I~p~lk~g~~L~FaHGfnIh~~---~I~pp~~vdV~mvAPKgpG~~VR~~y~~G-----~Gvp~l~ 150 (182)
T d1np3a2 79 LTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYN---QVVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLI 150 (182)
T ss_dssp CSCHHHHHHHHHHHTGGGCCTTCEEEESCCHHHHTT---SSCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEE
T ss_pred ecchHHHHHHHHHhhhhhcCCCcEEEEeccceEEee---eeecCCCCceEeeccccccchhHHHhhcC-----CccceEE
Confidence 999999999997 69999999999999999999773 47999999999999999999999999997 8999999
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCc--ccccc
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPF--TFATT 293 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~--viett 293 (462)
+++||.|+++++++++|+.+||++| +++||
T Consensus 151 AV~qD~sg~A~~~alayA~~iG~~raGvi~TT 182 (182)
T d1np3a2 151 AIYQDASGNAKNVALSYACGVGGGRTGIIETT 182 (182)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTHHHHCEEECC
T ss_pred EEEeCCCccHHHHHHHHHHHhCcCccceEecC
Confidence 9999999999999999999999986 89886
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=4.8e-43 Score=343.65 Aligned_cols=169 Identities=86% Similarity=1.380 Sum_probs=161.1
Q ss_pred hhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchh
Q 012479 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (462)
Q Consensus 294 f~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~ 373 (462)
|++|+++||||||++|||+++++++++|+.++++|++|++||++++|+++++|+++|+++||.+||+++|++++..|-..
T Consensus 1 f~~E~~SDl~GEq~iL~G~~~~~~~~~f~~l~~~G~~p~~Ay~etvee~t~~I~~lI~~~Gi~~My~~lS~~ak~~~~~~ 80 (288)
T d1qmga1 1 LEQEYKSDIFGERGILLGAVHGIVECLFRRYTESGMSEDLAYKNTVECITGVISKTISTKGMLALYNSLSEEGKKDFQAA 80 (288)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHTTHHHHHTHHHHHHHHTCHHHHHHTSCHHHHHHHHHH
T ss_pred CchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhChHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998777666665
Q ss_pred hccCchhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCcccchhhhcChhHHHhHHHHhcCCCCCCCCCCCchhHH
Q 012479 374 YSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGV 453 (462)
Q Consensus 374 ~~~~~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~~~~i~~~~ie~vG~~lR~~~~~~~~~~~~p~t~g~ 453 (462)
+...+.|++++|+++|++|+||+|+|+|+++++++||+++++.++|.+|++|+||++|++||++||+++++|++|||+|+
T Consensus 81 ~~~~~~~~kpvf~e~yddV~SG~eak~vi~a~~r~dyre~L~~~em~eI~~temwkvG~~vR~lrpe~~~~~~~~~~~g~ 160 (288)
T d1qmga1 81 YSASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGV 160 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCBTTBCCCCCCCSSCSHHHHHHHHHHHTCCTTCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHcCCccchHHhcchhhhhhhcccHHHHHHHHHHhcCCcccccccchHHHHH
Confidence 65567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcC
Q 012479 454 YAALMMAQV 462 (462)
Q Consensus 454 ~~~~~~~~~ 462 (462)
|+|+||||+
T Consensus 161 ~~~~~~a~~ 169 (288)
T d1qmga1 161 YVALMMAQI 169 (288)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999984
|
| >d1np3a1 a.100.1.2 (A:183-327) Class I ketol-acid reductoisomerase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class I ketol-acid reductoisomerase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.7e-38 Score=285.19 Aligned_cols=140 Identities=18% Similarity=0.357 Sum_probs=129.4
Q ss_pred hhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchh
Q 012479 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (462)
Q Consensus 294 f~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~ 373 (462)
|++|+++||||||++|||+++++++++||++|++||+||.||++|+|+++ +|+++|+++|+.+|+++|| +|||||+|
T Consensus 1 F~~E~~sDlfgEq~vL~Ggv~~~~~~~fe~lve~G~~pe~Ay~e~~he~~-lI~~li~~~Gl~~m~~~iS--dTAeyG~y 77 (145)
T d1np3a1 1 FKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAYFECLHELK-LIVDLMYEGGIANMNYSIS--NNAEYGEY 77 (145)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTHH-HHHHHHHHHHHHHHHHHSC--HHHHHHHH
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHccc-hhHHHHHHHhHHHHHHHhc--cHHHHHHH
Confidence 78999999999999999999999999999999999999999999999997 7999999999999999999 69999999
Q ss_pred hccC---chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc--chhhhcChhHHHhHHHHhcCCCC
Q 012479 374 YSAS---YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MGKIDQTRMWKVGERVRSTRPAG 441 (462)
Q Consensus 374 ~~~~---~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~--~~~i~~~~ie~vG~~lR~~~~~~ 441 (462)
..+. ..++|+.|+++|++||+|+|+|+|+.+++ .|.+.|+ +.++++|+||+||++||++|||.
T Consensus 78 ~~~~~~~~~~~k~~mk~~l~~IqsG~fak~~i~e~~-----~~~~~l~~~~~~~~~h~IE~VG~~LR~~Mp~~ 145 (145)
T d1np3a1 78 VTGPEVINAESRAAMRNALKRIQDGEYAKMFITEGA-----ANYPSMTAYRRNNAAHPIEQIGEKLRAMMPWI 145 (145)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTTHHHHHHHHHHH-----TTSHHHHHHHHHHHHSHHHHHHHHHHTTCTTC
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcchhhcccchhhH-----HHHHHHHHHHHhhhcCCHHHHHHHHHhhCCCC
Confidence 7553 46789999999999999999999999975 5677776 35889999999999999999994
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.85 E-value=9.8e-22 Score=175.29 Aligned_cols=146 Identities=16% Similarity=0.140 Sum_probs=124.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
|||||||+|+||.+++.+|.++ |.+++++.|+.++..+.+++.|+.. +.++.|++++||+|||++||+..
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~------~~~i~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~~dvIilavkp~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGGH
T ss_pred CEEEEEeccHHHHHHHHHHHhC------CCeEEEEcChHHhHHhhccccceee----echhhhhhhccceeeeecchHhH
Confidence 6899999999999999999998 8899999887666666677788875 67899999999999999999877
Q ss_pred HHHHHHHHhcCCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCC
Q 012479 192 ADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~t 270 (462)
.++++ .++++++ +++++|+++..+++ .++++.+++|+|||+|... |+|++. ++....++
T Consensus 71 ~~vl~----~l~~~~~iis~~agi~~~~l~~---~l~~~~~ivr~mPN~~~~v------------~~g~~~-~~~~~~~~ 130 (152)
T d2ahra2 71 ETVLK----PLHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI------------LQSSTA-LTGNALVS 130 (152)
T ss_dssp HHHHT----TSCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG------------TCEEEE-EEECTTCC
T ss_pred HHHhh----hcccceeEecccccccHHHHHh---hhcccccchhhccchhhhc------------CccceE-EEeCCCCC
Confidence 76654 4667775 57889999888776 5567789999999999877 468888 66688899
Q ss_pred HHHHHHHHHHHHHhCCC
Q 012479 271 GRATNVALGWSVALGSP 287 (462)
Q Consensus 271 gea~e~a~al~~aiG~~ 287 (462)
.+..+.++.+|+.+|..
T Consensus 131 ~~~~~~v~~l~~~~G~~ 147 (152)
T d2ahra2 131 QELQARVRDLTDSFGST 147 (152)
T ss_dssp HHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHhCCCE
Confidence 99999999999999953
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.83 E-value=4.2e-21 Score=170.40 Aligned_cols=145 Identities=15% Similarity=0.251 Sum_probs=118.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|||+|||+|+||.+++++|.++ | .++.+++|+.++..+.+++.|+.. ..+. +.++++|+|||++||+.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~------~~~~i~v~~r~~~~~~~l~~~~~~~~----~~~~-~~v~~~Div~lavkP~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATL-PELHSDDVLILAVKPQD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSC-CCCCTTSEEEECSCHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCCcEEEEeCChhHHHHhhhhccccc----cccc-ccccccceEEEecCHHH
Confidence 6899999999999999999988 6 688877777655556666778774 3344 45788999999999988
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCC
Q 012479 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~ga-iL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~ 269 (462)
..++++++.+ .++ +|++++|+++..+++ .++.+.+++|+|||+|... |+|++. ++...+.
T Consensus 70 ~~~v~~~l~~---~~~~viS~~ag~~~~~l~~---~l~~~~~iir~mpn~p~~~------------~~g~t~-~~~~~~~ 130 (152)
T d1yqga2 70 MEAACKNIRT---NGALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI------------GLGVSG-MYAEAEV 130 (152)
T ss_dssp HHHHHTTCCC---TTCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG------------TCEEEE-EECCTTS
T ss_pred HHHhHHHHhh---cccEEeecccCCCHHHHHH---HhCcCcceEeecccchhHh------------cCCcEE-EEeCCCC
Confidence 8888877653 345 467899999888876 6677788999999999877 478998 5667888
Q ss_pred CHHHHHHHHHHHHHhCC
Q 012479 270 DGRATNVALGWSVALGS 286 (462)
Q Consensus 270 tgea~e~a~al~~aiG~ 286 (462)
++++++.++.+|+.+|.
T Consensus 131 ~~~~~~~v~~l~~~~G~ 147 (152)
T d1yqga2 131 SETDRRIADRIMKSVGL 147 (152)
T ss_dssp CHHHHHHHHHHHHTTEE
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 99999999999999994
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.82 E-value=3.7e-20 Score=165.50 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=125.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceecCCCcCCHhh-hhccCCeEEEeecc
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~e-av~~ADvViLavpd 188 (462)
||||+|||+|+||.++|++|+++ |+. .+++++++.+..+.+++.|+. +....+..+ ...++|+|++|+|+
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~------g~~~~I~~~D~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~dlIila~p~ 72 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDINPESISKAVDLGII--DEGTTSIAKVEDFSPDFVMLSSPV 72 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHTTSC--SEEESCGGGGGGTCCSEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhc------CCCeEEEEEECChHHHHHHHHhhcc--hhhhhhhhhhhccccccccccCCc
Confidence 68899999999999999999998 762 245667778888999999986 222344443 44589999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
+...++++++.++++++++|+++++.+. ..++. .+++ ++|..||+. |.. ...+..+++.+++|.++++++
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~---~~~~--~~i~~hPm~-G~e-~sG~~~a~~~Lf~g~~~il~p 145 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIA-GTE-KSGVEYSLDNLYEGKKVILTP 145 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEEEC-CCS-CCSGGGCCSSTTTTCEEEECC
T ss_pred hhhhhhhhhhhccccccccccccccccHHHHHHHHH---hhcc--ccccccccc-ccc-cccHHHHHHHhhCCCeEEEec
Confidence 9999999999999999999999998743 23322 2333 699999962 221 123334445556689999999
Q ss_pred ccCCCHHHHHHHHHHHHHhCCC
Q 012479 266 HQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.+.+.++++.++.+|+.+|+.
T Consensus 146 ~~~~~~~~~~~v~~~~~~lG~~ 167 (171)
T d2g5ca2 146 TKKTDKKRLKLVKRVWEDVGGV 167 (171)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHHHHcCCE
Confidence 9999999999999999999974
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.81 E-value=1.1e-19 Score=162.30 Aligned_cols=161 Identities=14% Similarity=0.110 Sum_probs=122.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
|||+|||+|+||.++|++|+++ |++|+++ +++.+..+.+++.|+.. . ..+..+++++||+||+++|+...
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~------g~~V~~~-d~~~~~~~~a~~~~~~~--~-~~~~~~~~~~~DiIilavp~~~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGV-SRQQSTCEKAVERQLVD--E-AGQDLSLLQTAKIIFLCTPIQLI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEE-CSCHHHHHHHHHTTSCS--E-EESCGGGGTTCSEEEECSCHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEE-ECCchHHHHHHHhhccc--e-eeeecccccccccccccCcHhhh
Confidence 6899999999999999999999 9998765 55566788889988752 1 34556789999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCH
Q 012479 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tg 271 (462)
.++++++.++++++++|+++++........ .... ..+++..||...... ..+..+.+.+..|.++++++....+.
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~-~~~~--~~~~~~~h~~~~~~~--~g~~~a~~~l~~~~~~il~~~~~~~~ 145 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEP-ASQL--WSGFIGGHPMAGTAA--QGIDGAEENLFVNAPYVLTPTEYTDP 145 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHH-HHHH--STTCEEEEECCCCSC--SSGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHH-HHHh--hcccccceeeecccc--cchhhhcccccCCCeEEEEeCCCCCH
Confidence 999999999999999999998774321111 0011 125788888632211 11222233334578898999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 012479 272 RATNVALGWSVALGSP 287 (462)
Q Consensus 272 ea~e~a~al~~aiG~~ 287 (462)
++++.++.+|+.+|+.
T Consensus 146 ~~~~~v~~l~~~lG~~ 161 (165)
T d2f1ka2 146 EQLACLRSVLEPLGVK 161 (165)
T ss_dssp HHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHhCCE
Confidence 9999999999999974
|
| >d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI) domain: Class II ketol-acid reductoisomerase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.80 E-value=2e-21 Score=189.66 Aligned_cols=124 Identities=10% Similarity=0.081 Sum_probs=107.5
Q ss_pred HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HHHHhcHHHHHHhcCCcchhhhchhhccCchhHHHHHHHH
Q 012479 310 LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISK-IISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYEC 388 (462)
Q Consensus 310 ~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~-li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~~m~e~ 388 (462)
.|.+.+++.|.||+++++|++|++||++++|+++ +|.+ +|+++|+.+|+++|| +||+||+|..++.- .+.+++++
T Consensus 158 ~g~~~~~~~a~~e~l~~~G~~~~~a~~E~~~E~~-~~~~~li~~~g~~~M~~~~S--~TA~~G~~~~~prf-~~~~~~~~ 233 (288)
T d1qmga1 158 AGVYVALMMAQIEILRKKGHSYSEIINESVIEAV-DSLNPFMHARGVSFMVDNCS--TTARLGSRKWAPRF-DYILSQQA 233 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHTHHHH-HTTHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHH-HHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhccHHHHHHHhh--HHHHcccccchhhh-hHHHHHHH
Confidence 5888899999999999999999999999999999 4777 999999999999999 68999998765321 13478899
Q ss_pred HHhccCChhhhHHHHhcccccccCCCCcccc----hhhhcChhHHHhHHHHhcCCCCC
Q 012479 389 YEDVAAGSEIRSVVLAGRRFYEKEGLPAFPM----GKIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 389 ~~~i~~G~far~~~~~~~~~~~~~g~~~~~~----~~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
|++||+|.||++|+.+|+ .+.|.++. .++|.+.+|+||++||++|||-+
T Consensus 234 l~~i~~G~~a~~~l~en~-----~~~p~h~~~~~~~~lR~~~~~~vg~~vr~lrp~l~ 286 (288)
T d1qmga1 234 LVAVDNGAPINQDLISNF-----LSDPVHEAIGVCAQLRPSVDISVTADADFVRPELR 286 (288)
T ss_dssp HHHHHTTCCCCHHHHHHH-----HHCTHHHHHHHHHTTSCSCCCCCCTTCSSSCGGGC
T ss_pred HHHhcCChHHHHHHHHhc-----cCChHHHHHHHHHHhchHHHHHHHHHHHHhchhhc
Confidence 999999999999999986 46677663 36689999999999999999865
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.60 E-value=3.5e-15 Score=131.06 Aligned_cols=143 Identities=17% Similarity=0.124 Sum_probs=107.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
|+||+||| +|+||.++|++|+++ |++|.++++.... ..++.++++|++++++|+.
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~------G~~V~~~d~~~~~------------------~~~~~~~~~~~v~~~~~~~ 64 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDWA------------------VAESILANADVVIVSVPIN 64 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCGG------------------GHHHHHTTCSEEEECSCGG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHc------CCCcEeccccccc------------------ccchhhhhccccccccchh
Confidence 48999999 999999999999999 9999887764321 2345678899999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCC
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~ 269 (462)
+..+++.++.++++++++|+|+++++....+.....++ .+||..||.. |+.. .+ ..|...++++..
T Consensus 65 ~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~--~~~v~~hP~~-Gp~~-----~~----~~g~~~v~~~g~-- 130 (152)
T d2pv7a2 65 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPMF-GADI-----AS----MAKQVVVRCDGR-- 130 (152)
T ss_dssp GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEECS-CTTC-----SC----CTTCEEEEEEEE--
T ss_pred hheeeeecccccccCCceEEEecccCHHHHHHHHHHcc--CCEEEecccC-CCcc-----cc----cCCcEEEEecCC--
Confidence 99999999999999999999999986322211001233 3689999974 3321 01 146666666665
Q ss_pred CHHHHHHHHHHHHHhCCCccccc
Q 012479 270 DGRATNVALGWSVALGSPFTFAT 292 (462)
Q Consensus 270 tgea~e~a~al~~aiG~~~viet 292 (462)
+.++.+.++.+++.+|+ +++||
T Consensus 131 ~~~~~~~~~~ll~~~Ga-~v~et 152 (152)
T d2pv7a2 131 FPERYEWLLEQIQIWGA-KIYQT 152 (152)
T ss_dssp CGGGTHHHHHHHHHTTC-EEEEC
T ss_pred CHHHHHHHHHHHHHhCC-EEEeC
Confidence 45678999999999997 56655
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.53 E-value=2.6e-14 Score=127.11 Aligned_cols=148 Identities=17% Similarity=0.214 Sum_probs=107.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
|||||||+|+||.++|++|.++ |++|++++|. .+..+...+.|... ..+..|+++++|+||+++|+..+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~------G~~V~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~d~ii~~v~~~~~ 69 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRN-PEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 69 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHC------CCeEEEEeCC-cchhHHHHHhhhhh----cccHHHHHhCCCeEEEEcCCHHH
Confidence 6899999999999999999999 9998877665 44566777788875 67899999999999999996665
Q ss_pred H-HHH---HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 192 ~-~vl---~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
. +++ +.+.+.+++|++|++.+-.... ...+ .....+++++-....+..... + .|-..++.
T Consensus 70 v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vdapv~gg~~~a----~-------~g~l~~~~ 136 (161)
T d1vpda2 70 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDAPVSGGEPKA----I-------DGTLSVMV 136 (161)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEECCEESHHHHH----H-------HTCEEEEE
T ss_pred HHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHH--HHHHcCCceecccccCChhHH----h-------cCCeEEEE
Confidence 4 566 3588999999999888765321 2221 122457888876444321111 1 24434333
Q ss_pred eccCCCHHHHHHHHHHHHHhCC
Q 012479 265 VHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~ 286 (462)
.. +.++++.++.+++.+|.
T Consensus 137 -gG--~~~~~~~~~~il~~~~~ 155 (161)
T d1vpda2 137 -GG--DKAIFDKYYDLMKAMAG 155 (161)
T ss_dssp -ES--CHHHHHHHHHHHHTTEE
T ss_pred -cC--CHHHHHHHHHHHHHhcC
Confidence 33 57899999999999985
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=1.1e-14 Score=127.50 Aligned_cols=143 Identities=11% Similarity=0.047 Sum_probs=88.3
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHH
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~ 193 (462)
|||||+|+||.+++++|++. +..+.|+.|+.++..+.+++.+.. ..++.|+++++|+||+|+||+++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~------~~~~~v~~R~~~~~~~l~~~~~~~-----~~~~~~~~~~~DiVil~v~d~~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR------YEIGYILSRSIDRARNLAEVYGGK-----AATLEKHPELNGVVFVIVPDRYIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHHHTCCC-----CCSSCCCCC---CEEECSCTTTHHH
T ss_pred EEEEeCcHHHHHHHHHHHhC------CCEEEEEeCChhhhcchhhccccc-----ccchhhhhccCcEEEEeccchhhhH
Confidence 79999999999999999765 543456777766666666665544 5678899999999999999999888
Q ss_pred HHHHHHhcCCCCcEEEEecc-chHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHH
Q 012479 194 NYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGR 272 (462)
Q Consensus 194 vl~eI~~~Lk~gaiL~~a~G-~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tge 272 (462)
+++++. +++++|+++++ ..+..++. ..+..+..++..++ ++... .. ..+.++ ++.. +.+
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~~---~~~~~~~~~~~~~~-~~~~~----~~-----~~~~~~--~~~g--d~~ 130 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFKK---SGRASIHPNFSFSS-LEKAL----EM-----KDQIVF--GLEG--DER 130 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGCS---SSEEEEEECSCC---CTTGG----GC-----GGGCCE--EECC--CTT
T ss_pred HHhhhc---ccceeeeecccchhhhhhhh---hccccceeeeeccc-ccchh----hh-----ccCcEE--EEeC--CHH
Confidence 877653 46787766554 44433322 11122222333222 22221 11 123444 3333 457
Q ss_pred HHHHHHHHHHHhCCC
Q 012479 273 ATNVALGWSVALGSP 287 (462)
Q Consensus 273 a~e~a~al~~aiG~~ 287 (462)
+++.++.+++.+|+.
T Consensus 131 ~~~~~~~l~~~lG~~ 145 (153)
T d2i76a2 131 GLPIVKKIAEEISGK 145 (153)
T ss_dssp THHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHCCc
Confidence 899999999999974
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.42 E-value=1.4e-12 Score=115.98 Aligned_cols=149 Identities=18% Similarity=0.253 Sum_probs=109.5
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|+||||||+|+||.++|++|.++ |++|.+++|. .+..+.+...|... ..+..|+++++|+|++++|+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~------g~~v~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~diii~~v~~~~ 69 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLV-QSAVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 69 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCEE----CSSHHHHHTSCSEEEECCSCHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC------CCeEEEEECc-hhhhhhhhhhhccc----cchhhhhccccCeeeecccchh
Confidence 68999999999999999999999 9998877665 44566777788875 6789999999999999999876
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 191 QA-DNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 191 ~~-~vl~---eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
.. +++. .+.+.+++|+++++.+-.... .+.+ ....++++++- +|..-++.. -. .|...++
T Consensus 70 ~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~--~~~~~gi~~~d-apv~Gg~~~---a~-------~G~l~~~ 136 (162)
T d3cuma2 70 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTAG---AA-------AGTLTFM 136 (162)
T ss_dssp HHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEESCHHH---HH-------HTCEEEE
T ss_pred hHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCcEEe-cccccCccc---cc-------cCCeEEE
Confidence 65 4654 378889999999988876432 2222 12245788885 464323321 11 2454434
Q ss_pred eeccCCCHHHHHHHHHHHHHhCC
Q 012479 264 AVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~ 286 (462)
. .. +.++++.++.+++.+|.
T Consensus 137 ~-gG--~~~~~~~~~~il~~~~~ 156 (162)
T d3cuma2 137 V-GG--DAEALEKARPLFEAMGR 156 (162)
T ss_dssp E-ES--CHHHHHHHHHHHHHHEE
T ss_pred e-cC--CHHHHHHHHHHHHHHcC
Confidence 3 33 57889999999999985
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.33 E-value=2.5e-12 Score=112.96 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=81.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh-HHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|||||||+|+||.++|++|+++ |++++++++..++. ...++..++. .++.|++++||+||+++|+..
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~diIi~~v~~~~ 68 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CEEEEEcHHHHHHHHHHHHHHC------CCeEEEEcCchhHHHHHhhhccccc------ccHHHHHhhcCeEEEEecCch
Confidence 6899999999999999999999 99988877664433 3344444443 478899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCCCc
Q 012479 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pngpg 241 (462)
..+++.++.+.+ ++++++++... ...+.+ .++ +..++-+.++++.
T Consensus 69 ~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~---~~~-~~~~~d~~v~g~~ 116 (152)
T d1i36a2 69 ALGAARRAGRHV--RGIYVDINNISPETVRMASS---LIE-KGGFVDAAIMGSV 116 (152)
T ss_dssp HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHH---HCS-SSEEEEEEECSCH
T ss_pred HHHHHHhhcccC--CceeeccCcCCHHHHHHHHH---HHh-ccCCCcccccCCc
Confidence 999998888876 56777776543 233333 333 3456655555543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.30 E-value=6e-12 Score=111.49 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=78.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-----------CCCcCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-----------NGTLGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-----------d~~~~~~~eav~~AD 180 (462)
|||+|||.|+||.++|..|.++ |++|.++.|. ++..+...+.|.... .....+..|+++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~------G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDID-AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence 8999999999999999999999 9999887765 444555555543210 001357889999999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+||+++|...+.+++++|+|+++++++|+.+.|.
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCC
Confidence 9999999999999999999999999998888765
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.21 E-value=1.6e-11 Score=110.28 Aligned_cols=152 Identities=15% Similarity=0.067 Sum_probs=102.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec----CCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----NGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~----d~~~~~~~eav~~ADvViLavp 187 (462)
.+|||||+|+||.++|++|.++ |++|++++|..++ .+...+.+.... .....++.+++..+|+|++++|
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~ 75 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVSK-VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK 75 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTHH-HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred CcEEEEeEhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHhccccccccchhhhhhhhhhhcccceEEEecC
Confidence 5799999999999999999999 9999888777655 344444443210 0113356678889999999999
Q ss_pred chhH-HHHHHHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 188 DAAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 188 d~a~-~~vl~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+... .++++++.+.+++|+++++.+-.... .+.+ .....++.++- +|-.-+.... + .|. .++
T Consensus 76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~--~~~~~g~~~ld-apvsGg~~~A---~-------~G~-~~~ 141 (176)
T d2pgda2 76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR--DLKDKGILFVG-SGVSGGEDGA---R-------YGP-SLM 141 (176)
T ss_dssp TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-EEEESHHHHH---H-------HCC-EEE
T ss_pred chHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHH--HHHhcCCceec-cccccCcccc---c-------CCc-EEE
Confidence 7655 57888999999999999988765432 2211 12235677774 4533222211 1 245 333
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCC
Q 012479 264 AVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.. +.+.++.++.+++.+|..
T Consensus 142 -~gG--~~~~~~~~~~il~~~~~k 162 (176)
T d2pgda2 142 -PGG--NKEAWPHIKAIFQGIAAK 162 (176)
T ss_dssp -EEE--CTTTHHHHHHHHHHHSCB
T ss_pred -cCC--CHHHHHHHHHHHHHHhcc
Confidence 343 356788999999999964
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.4e-10 Score=104.62 Aligned_cols=153 Identities=15% Similarity=0.190 Sum_probs=113.9
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-----------HcCceec----C---------
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE----N--------- 166 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-----------~~G~~~~----d--------- 166 (462)
|+||+|||.|.||.++|..+... |++|++.++.. +..+.+. +.|.... +
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~------G~~V~l~D~~~-~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQTE-DILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 76 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCH-HHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred eEEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCh-HHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence 48999999999999999999999 99988776543 2222221 2232100 0
Q ss_pred -CCcCCHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCch
Q 012479 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 167 -~~~~~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
....+..+++++||+|+=++|.... .+++.+|.+.++++++|. -++++.+..+.. .....-+|+..||--|.+
T Consensus 77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~HffnP~~ 153 (192)
T d1f0ya2 77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 153 (192)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhh---hccCHhHEEeeccccccC
Confidence 0145778899999999999997655 369999999999999875 556677766654 333345899999988887
Q ss_pred hhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.. -.-= +.++...+++.++.+.++++.+|..
T Consensus 154 ~~-------------~lVE-Iv~g~~T~~~~i~~~~~~~~~lgk~ 184 (192)
T d1f0ya2 154 VM-------------KLVE-VIKTPMTSQKTFESLVDFSKALGKH 184 (192)
T ss_dssp TC-------------CEEE-EECCTTCCHHHHHHHHHHHHHTTCE
T ss_pred cc-------------cEEE-EcCCCCCCHHHHHHHHHHHHHcCCE
Confidence 62 1222 6678899999999999999999964
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.14 E-value=3.1e-10 Score=103.26 Aligned_cols=154 Identities=11% Similarity=0.105 Sum_probs=112.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCceecC--------CCc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN--------GTL 169 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~d--------~~~ 169 (462)
+.|+||+|||.|.||.++|..+..+ |++|++.++. .+..+.+.+ .|..... -..
T Consensus 2 ~~I~~vaViGaG~mG~~iA~~~a~~------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~ 74 (186)
T d1wdka3 2 KDVKQAAVLGAGIMGGGIAYQSASK------GTPILMKDIN-EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP 74 (186)
T ss_dssp CCCSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec
Confidence 3479999999999999999999999 9998877654 333333322 1111000 001
Q ss_pred CCHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHH
Q 012479 170 GDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~ 246 (462)
.+..+.+.+||+|+-++|-..- .+++.+|.++.+++++| +-++++.+..+.. .....-+++..|+--|.+.
T Consensus 75 ~~~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~---~~~~p~r~~g~Hf~nP~~~--- 148 (186)
T d1wdka3 75 TLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM--- 148 (186)
T ss_dssp ESSSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT---
T ss_pred ccccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHH---hccCchheEeeccccCccc---
Confidence 2233568899999999996655 36999999999999987 4677788876655 3333457999999888877
Q ss_pred hhhcCccccCCCceEE-EeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 247 LYVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 247 lf~~G~~~~G~Gv~al-iav~qd~tgea~e~a~al~~aiG~~ 287 (462)
++.+ +.++...+++.++.+.++++.+|..
T Consensus 149 ------------~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~ 178 (186)
T d1wdka3 149 ------------MPLVEVIRGEKSSDLAVATTVAYAKKMGKN 178 (186)
T ss_dssp ------------CCEEEEEECSSCCHHHHHHHHHHHHHTTCE
T ss_pred ------------CCeEEECCCCCCCHHHHHHHHHHHHHcCCE
Confidence 3332 5678899999999999999999964
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.09 E-value=9.8e-10 Score=99.06 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=73.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCce------ecC---CCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFT------EEN---GTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~------~~d---~~~~~~~eav~~ADv 181 (462)
|||+|||.|++|.++|..|.++ |++|.++.|.. .+..+.-.+.... ... ....+.+++++++|+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~------g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~ 74 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccch
Confidence 7999999999999999999999 99998887642 2222222221110 000 013567889999999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
|++++|.+...++++++.|+++++.+|+.+.|.
T Consensus 75 Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~ 107 (180)
T d1txga2 75 VLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (180)
T ss_dssp EEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred hhcccchhhhHHHHHhhccccccceecccccCc
Confidence 999999999999999999999988777777775
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.95 E-value=1.2e-09 Score=96.01 Aligned_cols=144 Identities=14% Similarity=0.107 Sum_probs=95.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
.||||||+|+||.+||++|.+. |+. ++++|..++..+.+.+.+... +..+.+.++|++|+++|+...
T Consensus 1 ekIg~IGlG~MG~~ma~~L~~~------g~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~ 67 (156)
T d2cvza2 1 EKVAFIGLGAMGYPMAGHLARR------FPT-LVWNRTFEKALRHQEEFGSEA------VPLERVAEARVIFTCLPTTRE 67 (156)
T ss_dssp CCEEEECCSTTHHHHHHHHHTT------SCE-EEECSSTHHHHHHHHHHCCEE------CCGGGGGGCSEEEECCSSHHH
T ss_pred CeEEEEeHHHHHHHHHHHHHhC------CCE-EEEeCCHHHHHHHHHHcCCcc------cccccccceeEEEecccchhh
Confidence 3799999999999999999988 875 578888777666666655542 345667789999999997766
Q ss_pred H-HHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeecc
Q 012479 192 A-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 192 ~-~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q 267 (462)
. .+...+.+.++++.++++.+-... ..+.+ ..-..+++++- +|-.-+... =+ .|--.+++ ..
T Consensus 68 v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~--~~~~~gi~~ld-apVsGg~~~---A~-------~G~L~~~v-gG 133 (156)
T d2cvza2 68 VYEVAEALYPYLREGTYWVDATSGEPEASRRLAE--RLREKGVTYLD-APVSGGTSG---AE-------AGTLTVML-GG 133 (156)
T ss_dssp HHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEEE-CCEESHHHH---HH-------HTCEEEEE-ES
T ss_pred hhhhhccccccccccccccccccCCHHHHHHHHH--HHHHcCCeEEe-ccccCchhh---hc-------cCCEEEEE-eC
Confidence 4 455679999999999887775532 12221 12134666663 454222111 01 24434343 32
Q ss_pred CCCHHHHHHHHHHHHHhC
Q 012479 268 DVDGRATNVALGWSVALG 285 (462)
Q Consensus 268 d~tgea~e~a~al~~aiG 285 (462)
+.+..+.++-++ .++
T Consensus 134 --~~~~~~~~~p~L-~~~ 148 (156)
T d2cvza2 134 --PEEAVERVRPFL-AYA 148 (156)
T ss_dssp --CHHHHHHHGGGC-TTE
T ss_pred --CHHHHHHHHHHH-Hhc
Confidence 567888887776 355
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.91 E-value=7.4e-10 Score=100.82 Aligned_cols=101 Identities=11% Similarity=0.108 Sum_probs=78.5
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
+|+|+|........++| ++|+|||+|.+|..+|+.++.. |.+|+++++...+ ..... ..+.+
T Consensus 26 ~~~~~w~~~~~~~~l~g-k~vgIiG~G~IG~~va~~l~~~------g~~v~~~d~~~~~-------~~~~~----~~~l~ 87 (181)
T d1qp8a1 26 MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPKE-------GPWRF----TNSLE 87 (181)
T ss_dssp HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCCC-------SSSCC----BSCSH
T ss_pred HHcCCCCCCCCCCcccC-ceEEEeccccccccceeeeecc------ccccccccccccc-------cceee----eechh
Confidence 45678877666567999 9999999999999999999988 9998777654221 12221 45789
Q ss_pred hhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 012479 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 174 eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
|++++||+|++++|.... ..++. +....||+|++|+-++
T Consensus 88 ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~ 128 (181)
T d1qp8a1 88 EALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG 128 (181)
T ss_dssp HHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred hhhhccchhhcccccccccccccccceeeeccccceEEecc
Confidence 999999999999997654 34665 6889999999887554
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.89 E-value=5.7e-09 Score=92.89 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=97.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC----CCcCC---HhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN----GTLGD---IYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d----~~~~~---~~eav~~ADvViL 184 (462)
|||||||+|+||.++|++|.++ |++|.+++|..++..+..++ |..... ....+ .-..+..++.+++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~------G~~V~~~dr~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKA-NASAPFAGNLKAFETMEAFAASLKKPRKALI 74 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHH-TTTSTTGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred CEEEEEeehHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHc-CCccccccchhhhhhhhHHHHhcccceEEEE
Confidence 7899999999999999999999 99998877765554444443 332100 00112 2334567788888
Q ss_pred eecchhH-HHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCce
Q 012479 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (462)
Q Consensus 185 avpd~a~-~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ 260 (462)
++++... ..++.++.+.+++|+++++.+-... ..+.+ .....++.++-. |-.-+.. ... .|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~--~l~~~~~~~lda-pv~g~~~---~a~-------~g~- 140 (178)
T d1pgja2 75 LVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ--QLEAAGLRFLGM-GISGGEE---GAR-------KGP- 140 (178)
T ss_dssp CCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH--HHHTTTCEEEEE-EEESHHH---HHH-------HCC-
T ss_pred eecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHH--HHhhcceeEecc-cccCCcc---hhc-------CCc-
Confidence 8887665 4688889999999999887764422 12222 122456777653 4221111 122 244
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 261 aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.++ +.. +.+..+.++.+++.+|..
T Consensus 141 ~~m-vgG--~~~~~~~v~pil~~~~~~ 164 (178)
T d1pgja2 141 AFF-PGG--TLSVWEEIRPIVEAAAAK 164 (178)
T ss_dssp EEE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred EEE-eeC--CHHHHHHHHHHHHHHhcc
Confidence 333 233 578999999999999963
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.89 E-value=3e-09 Score=97.02 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=93.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC--------ceecC--CCcCCHhhhhccCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------FTEEN--GTLGDIYETISGSD 180 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G--------~~~~d--~~~~~~~eav~~AD 180 (462)
|+||+|||.|++|.++|..|.+. |++|.++.|..+ ..+.-.+.+ +...+ ....+.+++++++|
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~------g~~V~l~~r~~~-~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad 79 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNEE-EVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAE 79 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTT------EEEEEEECSCHH-HHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCS
T ss_pred eceEEEECCCHHHHHHHHHHHHc------CCeEEEEEecHH-HHHHHhhcccccccccccccccccccchhhhhccCCCC
Confidence 47899999999999999999998 889888776533 233222222 21100 01457889999999
Q ss_pred eEEEeecchhHHHHHHHHHhc-----CCCCc-EEEEeccch------H-HHhhhccccCCCCccEEecccCCCchhhHHh
Q 012479 181 LVLLLISDAAQADNYEKIFSC-----MKPNS-ILGLSHGFL------L-GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~-----Lk~ga-iL~~a~G~~------i-~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~l 247 (462)
+||+++|.+...++++++.++ ++++. +|+.+-|+. + ..+.+ .+|.+.-.|.. ||.+. ++
T Consensus 80 ~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e---~~~~~~~~vls---GP~~A--~E 151 (189)
T d1n1ea2 80 IILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGE---FLPSPLLSVLA---GPSFA--IE 151 (189)
T ss_dssp CEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTT---TSCGGGEEEEE---SSCCH--HH
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHH---HhcccceEEEe---cCCcH--HH
Confidence 999999999999999987664 34555 455666772 1 12222 23443222333 55444 33
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHH
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~a 283 (462)
.. +|.|+.+++.. .+.+..+.+.++++.
T Consensus 152 v~-------~~~pt~~viAs-~~~~~a~~i~~lfst 179 (189)
T d1n1ea2 152 VA-------TGVFTCVSIAS-ADINVARRLQRIMST 179 (189)
T ss_dssp HH-------TTCCEEEEEEC-SSHHHHHHHHHHHSC
T ss_pred HH-------cCCCcEEEEEe-CCHHHHHHHHHHhCC
Confidence 33 35666455443 255555666666653
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.86 E-value=1.6e-09 Score=99.53 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=80.5
Q ss_pred eeecCcccccc--------cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee
Q 012479 93 IVRGGRDLFNL--------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (462)
Q Consensus 93 ~~~~~~~~f~~--------~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (462)
.+|+|+|.... ....|.| ++|||||+|++|..+|+.|+.. |.+|+++++..... .....++..
T Consensus 24 ~~~~g~w~~~~~~~~~~~~~~~eL~g-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~--~~~~~~~~~ 94 (193)
T d1mx3a1 24 ALREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSDG--VERALGLQR 94 (193)
T ss_dssp HHHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCTT--HHHHHTCEE
T ss_pred HHHcCCcccccccccccccCceeeeC-ceEEEeccccccccceeeeecc------ccceeeccCccccc--chhhhcccc
Confidence 35677785432 2467999 9999999999999999999877 99988776653332 233456654
Q ss_pred cCCCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 012479 165 ENGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 165 ~d~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
..+.+|++++||+|++++|-... ..++. +....||+|++|+-++
T Consensus 95 ----~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~s 140 (193)
T d1mx3a1 95 ----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTA 140 (193)
T ss_dssp ----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECS
T ss_pred ----ccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecC
Confidence 56899999999999999995544 34554 6788999999887443
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.81 E-value=3.5e-09 Score=97.00 Aligned_cols=131 Identities=19% Similarity=0.180 Sum_probs=88.6
Q ss_pred eecCcccc----cccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCc
Q 012479 94 VRGGRDLF----NLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169 (462)
Q Consensus 94 ~~~~~~~f----~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~ 169 (462)
+|.|+|.. ......++| ++|||||+|.+|..+|+.++.. |.+++++++......... ..+... .
T Consensus 27 ~r~g~w~~~~~~~~~~~~l~g-~tvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~~~~-~~~~~~----~ 94 (191)
T d1gdha1 27 IRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASSSDEA-SYQATF----H 94 (191)
T ss_dssp HHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCHHHHH-HHTCEE----C
T ss_pred HHcCCCCcCCccccccceecc-cceEEeecccchHHHHHHHHhh------ccccccccccccccchhh-cccccc----c
Confidence 55677742 233577889 9999999999999999999877 889877665433323333 334442 4
Q ss_pred CCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEeccc
Q 012479 170 GDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCP 237 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~P 237 (462)
.+.++++++||+|++++|-... ..++. +.+..||+|++|+-++ |-. +..+++..+. ....||.-..|
T Consensus 95 ~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~-~a~lDV~~~EP 170 (191)
T d1gdha1 95 DSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA-YAGFDVFAGEP 170 (191)
T ss_dssp SSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE-EEEESCCTTTT
T ss_pred CCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCce-EEEEECCCCCC
Confidence 6899999999999999996544 45665 6888999999887444 531 2223331111 22456776677
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.80 E-value=3.5e-09 Score=97.57 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=76.1
Q ss_pred ecCccccccc-ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 95 RGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 95 ~~~~~~f~~~-~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
++|+|.+... ...|.| ++|||||+|++|..+|+.|+.- |.+|++.++.... .....++. ..+.+
T Consensus 27 ~~~~~~w~~~~g~el~g-k~vgIiG~G~IG~~va~~l~~f------g~~V~~~d~~~~~---~~~~~~~~-----~~~l~ 91 (197)
T d1j4aa1 27 ARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNP---ELEKKGYY-----VDSLD 91 (197)
T ss_dssp HTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH---HHHHTTCB-----CSCHH
T ss_pred HhCCCCcCCCcCccccC-CeEEEecccccchhHHHhHhhh------cccccccCccccc---ccccceee-----ecccc
Confidence 4455533222 377999 9999999999999999999877 9998766544322 22234554 46899
Q ss_pred hhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEe-cc
Q 012479 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HG 213 (462)
Q Consensus 174 eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a-~G 213 (462)
+++++||+|++++|.... ..++. +.+..||+|++|+-+ -|
T Consensus 92 ~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG 134 (197)
T d1j4aa1 92 DLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 134 (197)
T ss_dssp HHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCG
T ss_pred ccccccccccccCCccccccccccHHHHhhhCCccEEEecCch
Confidence 999999999999996544 44554 677889999987744 35
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.78 E-value=3.8e-09 Score=96.06 Aligned_cols=105 Identities=19% Similarity=0.179 Sum_probs=79.9
Q ss_pred eecCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 012479 94 VRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (462)
Q Consensus 94 ~~~~~~~f~~-~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (462)
+|.++|.... ....+.| ++|+|||+|.+|..+|+.++.- |.+|++.++... .+.....++. ..+.
T Consensus 27 ~~~~~W~~~~~~~~~l~~-k~vgiiG~G~IG~~va~~~~~f------g~~v~~~d~~~~--~~~~~~~~~~-----~~~l 92 (184)
T d1ygya1 27 LREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYVS--PARAAQLGIE-----LLSL 92 (184)
T ss_dssp HHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSC--HHHHHHHTCE-----ECCH
T ss_pred HHhCCCCccccccccccc-eeeeeccccchhHHHHHHhhhc------cceEEeecCCCC--hhHHhhcCce-----eccH
Confidence 4677886543 2467899 9999999999999999999876 888876655432 3344455665 4689
Q ss_pred hhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 012479 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
+|++++||+|++++|-... ..++. +.+..||+|++|+-++
T Consensus 93 ~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~s 134 (184)
T d1ygya1 93 DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 134 (184)
T ss_dssp HHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred HHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEec
Confidence 9999999999999995554 45665 6888999999887444
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.78 E-value=3.5e-09 Score=96.36 Aligned_cols=107 Identities=13% Similarity=0.058 Sum_probs=81.0
Q ss_pred eecCcccccc---cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC
Q 012479 94 VRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (462)
Q Consensus 94 ~~~~~~~f~~---~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (462)
+|.|+|.+.. ....++| ++|||||+|.+|..+|+.|+.. |.+|++.++. ..........++.. ..
T Consensus 25 ~~~g~w~~~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~-~~~~~~~~~~~~~~----~~ 92 (188)
T d2naca1 25 ARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRH-RLPESVEKELNLTW----HA 92 (188)
T ss_dssp HHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSS-CCCHHHHHHHTCEE----CS
T ss_pred HHhCCCCCcccCCcceeccc-cceeeccccccchhhhhhhhcc------CceEEEEeec-cccccccccccccc----cC
Confidence 4567885432 2367899 9999999999999999999887 8888766554 33344555566664 57
Q ss_pred CHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 012479 171 DIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
+.+|++++||+|++++|-... ..++. +....||+|++|+-++
T Consensus 93 ~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~a 136 (188)
T d2naca1 93 TREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 136 (188)
T ss_dssp SHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred CHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecC
Confidence 899999999999999995444 45665 6888999999877443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=4.8e-09 Score=90.91 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=71.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc---eecCCCcCCHhhhhccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~---~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
|||+|||+|+||..+|..|.+. |++|.+..|...+... ....+. ........+..+.+..+|+||+++|.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~------G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCceEEEEcCHHHhhh-hccccCCccccccccccchhhhhcccceEEEeecc
Confidence 7999999999999999999999 9999887775432110 000110 00000123456778899999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEE-EEeccch
Q 012479 189 AAQADNYEKIFSCMKPNSIL-GLSHGFL 215 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL-~~a~G~~ 215 (462)
.+..++++.+.+++.++++| +..-|+.
T Consensus 74 ~~~~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 74 WQVSDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp GGHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred cchHHHHHhhccccCcccEEeeccCccc
Confidence 99999999999999988865 5666774
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.63 E-value=8.1e-09 Score=95.00 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=76.4
Q ss_pred eecCccccc--ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC
Q 012479 94 VRGGRDLFN--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (462)
Q Consensus 94 ~~~~~~~f~--~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (462)
+++|+|... .....|.| ++|||||+|++|..+|+.|+.. |.+|+++++..... ....+. ..+
T Consensus 27 ~~~g~w~~~~~~~~~~l~~-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~----~~~~~~-----~~~ 90 (199)
T d1dxya1 27 LQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG----DHPDFD-----YVS 90 (199)
T ss_dssp HHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS----CCTTCE-----ECC
T ss_pred HHhCCCCcccCcccccccc-eeeeeeeccccccccccccccc------ceeeeccCCccchh----hhcchh-----HHH
Confidence 456788542 12468999 9999999999999999999877 99987766543221 112233 458
Q ss_pred HhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEE-Eecc
Q 012479 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHG 213 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~-~a~G 213 (462)
.+++++.||+|++++|-... ..++. +....||+|++|+ .+-|
T Consensus 91 l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG 135 (199)
T d1dxya1 91 LEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARP 135 (199)
T ss_dssp HHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCT
T ss_pred HHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccH
Confidence 99999999999999995544 34554 6778899999877 4445
|
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.63 E-value=4.1e-08 Score=82.77 Aligned_cols=65 Identities=9% Similarity=0.124 Sum_probs=59.6
Q ss_pred ccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 300 SDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 300 ~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
++.|+..|+|+||+|| +++++.+.+++.|+++++|.+++.|++.| .++|+.+++. ..|+++|+.+
T Consensus 2 E~~~d~~Tal~GSGPAy~~~~~ea~~~~~~~~Gl~~~~a~~lv~~~~~G-s~~ll~~s~~~~~~L~~~V~Sp 72 (111)
T d1yqga1 2 EEKMHGITGISGSGPAYVFYLLDALQNAAIRQGFDMAEARALSLATFKG-AVALAEQTGEDFEKLQKNVTSK 72 (111)
T ss_dssp TTHHHHHHHHTTSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTCCT
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHhCCCCHHHHHhcccCc
Confidence 3477888999999998 89999999999999999999999999999 8999999876 9999999954
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=1.9e-08 Score=91.34 Aligned_cols=103 Identities=21% Similarity=0.239 Sum_probs=74.8
Q ss_pred ecCccccccc-ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 95 RGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 95 ~~~~~~f~~~-~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
++|.|..... ...+.| ++|||||+|.+|..+|+.++.. |.+|+++++...... ..... ..+.+
T Consensus 28 ~~~~w~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~-----~~~~~----~~~l~ 91 (188)
T d1sc6a1 28 HRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLPL-----GNATQ----VQHLS 91 (188)
T ss_dssp HHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCCC-----TTCEE----CSCHH
T ss_pred HhCCCcccccccccccc-eEEEEeecccchhhhhhhcccc------cceEeeccccccchh-----hhhhh----hhhHH
Confidence 4566754332 456899 9999999999999999999877 999887765433211 22222 56899
Q ss_pred hhhccCCeEEEeecchh-HHHHHH-HHHhcCCCCcEEE-Eecc
Q 012479 174 ETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILG-LSHG 213 (462)
Q Consensus 174 eav~~ADvViLavpd~a-~~~vl~-eI~~~Lk~gaiL~-~a~G 213 (462)
|++++||+|++++|-.. ...++. +....|++|++|+ .+-|
T Consensus 92 ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG 134 (188)
T d1sc6a1 92 DLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 134 (188)
T ss_dssp HHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCS
T ss_pred HHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcH
Confidence 99999999999999444 445665 6888899999877 4545
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.57 E-value=1.2e-07 Score=89.91 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=78.6
Q ss_pred cCCHhhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhh
Q 012479 169 LGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
+.|+.|++++||+||+++|+.. ..+++++|.+++++|++|++++.+... .+.+ ..-+++++|+..||.++...
T Consensus 132 ~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e--~l~~kgi~vi~~hp~a~pe~- 208 (242)
T d2b0ja2 132 TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK--DLGREDLNITSYHPGCVPEM- 208 (242)
T ss_dssp ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH--HTTCTTSEEEECBCSSCTTT-
T ss_pred ECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHH--hcccCCCEEECCCccCcCcc-
Confidence 5789999999999999998754 568999999999999999998876432 2222 12256899999999764322
Q ss_pred HHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.|...++ ....+.+.++.++.+++.+|..
T Consensus 209 ------------~g~~li~--~~~aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 209 ------------KGQVYIA--EGYASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp ------------CCCEEEE--ESSSCHHHHHHHHHHHHHHHSC
T ss_pred ------------ccceEEe--cCCCCHHHHHHHHHHHHHHCCC
Confidence 3555533 4457999999999999999964
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.53 E-value=3.8e-07 Score=82.89 Aligned_cols=158 Identities=13% Similarity=0.159 Sum_probs=96.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-------------------HcCceecCCCcCCH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAGFTEENGTLGDI 172 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-------------------~~G~~~~d~~~~~~ 172 (462)
|||+|||+|-+|.++|..|.+. |++|+ +++.+++..+.-. ..+... ...+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~------g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~---~~~~~ 70 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR------GHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS---GTTDF 70 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---EESCH
T ss_pred CEEEEECCCHhHHHHHHHHHhC------CCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccc---cCCCH
Confidence 7899999999999999999999 99875 6666554433222 122111 14678
Q ss_pred hhhhccCCeEEEeecch----------hHHHHHHH---HHhcCCCCcEEEEec----cchHH----Hhhh-ccccCCCCc
Q 012479 173 YETISGSDLVLLLISDA----------AQADNYEK---IFSCMKPNSILGLSH----GFLLG----HLQS-MGLDFPKNI 230 (462)
Q Consensus 173 ~eav~~ADvViLavpd~----------a~~~vl~e---I~~~Lk~gaiL~~a~----G~~i~----~~~~-~~i~~p~~v 230 (462)
.+++++||+|++|+|.. ....+.++ +...++++++|++-+ |+.-. .+++ ......+++
T Consensus 71 ~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~ 150 (202)
T d1mv8a2 71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDF 150 (202)
T ss_dssp HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTB
T ss_pred HHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccc
Confidence 89999999999999842 22344444 445566788776554 43210 1111 111222333
Q ss_pred cEEecccC--CCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCccccc
Q 012479 231 GVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292 (462)
Q Consensus 231 ~VV~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viet 292 (462)
. +..+|- .+|....+... .+-++. . ..+.+..+.++++++.+... +++|
T Consensus 151 ~-~~~~PE~~~~G~a~~d~~~---------~~~iVi-G-~~~~~~~~~~~~ly~~i~~~-ii~~ 201 (202)
T d1mv8a2 151 G-VGTNPEFLRESTAIKDYDF---------PPMTVI-G-ELDKQTGDLLEEIYRELDAP-IIRK 201 (202)
T ss_dssp E-EEECCCCCCTTSHHHHHHS---------CSCEEE-E-ESSHHHHHHHHHHHTTSSSC-EEEE
T ss_pred c-chhhhhhhcccchhhhhcC---------CCeEEE-E-eCCHHHHHHHHHHHHhcCCC-eEec
Confidence 2 556675 56666665544 232222 2 12578899999999998753 5544
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.4e-07 Score=84.60 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=77.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
-.|.| |+++|||||-+|..+|+.+|.. |.+|++.... +-..-+|.-+||. +.+.+++++.+|+|+.+
T Consensus 20 ~~l~G-k~v~V~GyG~iG~g~A~~~rg~------G~~V~v~e~d-p~~al~A~~dG~~-----v~~~~~a~~~adivvta 86 (163)
T d1li4a1 20 VMIAG-KVAVVAGYGDVGKGCAQALRGF------GARVIITEID-PINALQAAMEGYE-----VTTMDEACQEGNIFVTT 86 (163)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEeccccccHHHHHHHHhC------CCeeEeeecc-cchhHHhhcCceE-----eeehhhhhhhccEEEec
Confidence 45788 9999999999999999999988 9998887655 3334556678998 57899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|..... +=.+.++.||+|++|.-++.|.
T Consensus 87 TGn~~v--I~~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 87 TGCIDI--ILGRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp SSCSCS--BCHHHHTTCCTTEEEEECSSST
T ss_pred CCCccc--hhHHHHHhccCCeEEEEecccc
Confidence 986432 1236788999999999887774
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.46 E-value=1.7e-07 Score=78.02 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=57.8
Q ss_pred chhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 302 IFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 302 lfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
.|+..|+|+||+|| +++++.+.+++.|+++++|.+++.|++.| .+.|+.+++. ..|+++|+.+
T Consensus 2 ~~d~~TalsGSGPAf~~~~~ea~~~~~~~~Gl~~~~a~~l~~~t~~g-s~~ll~~~~~~p~~l~~~V~Sp 70 (104)
T d2ahra1 2 DFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIVTQTVLA-SASNLKTSSQSPHDFIDAICSP 70 (104)
T ss_dssp GHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HHHHHHHSSSCHHHHHHHHCCT
T ss_pred CcchHhHhccChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHhccCC
Confidence 47788999999999 67999999999999999999999999999 8999999885 9999999953
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.42 E-value=2.8e-07 Score=82.50 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=78.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
--|.| |++.|+|||-.|..+|+.+|.. |.+|+|.... +-..-+|.-+||. +.+.+|+++.+|+||.+
T Consensus 19 ~~laG-k~vvV~GYG~vGrG~A~~~rg~------Ga~V~V~E~D-Pi~alqA~mdGf~-----v~~~~~a~~~aDi~vTa 85 (163)
T d1v8ba1 19 FLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEID-PICAIQAVMEGFN-----VVTLDEIVDKGDFFITC 85 (163)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSC-HHHHHHHHTTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEecccccchhHHHHHHhC------CCEEEEEecC-chhhHHHHhcCCc-----cCchhHccccCcEEEEc
Confidence 45788 9999999999999999999998 9898887654 4344566678998 58999999999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~ 215 (462)
|.... ++. +.+..||+|++|.-++.|.
T Consensus 86 TGn~~---vI~~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 86 TGNVD---VIKLEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp CSSSS---SBCHHHHTTCCTTCEEEECSSTT
T ss_pred CCCCc---cccHHHHHHhhCCeEEEeccccc
Confidence 98754 333 6788999999999888775
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.22 E-value=2.1e-06 Score=75.85 Aligned_cols=96 Identities=19% Similarity=0.242 Sum_probs=71.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.+++ ++|.|||.|-||..++.+|... |. ++.+..|...+..+.+.+.|... ....+..+.+.++|+||.+
T Consensus 21 ~l~~-~~ilviGaG~~g~~v~~~L~~~------g~~~i~v~nRt~~ka~~l~~~~~~~~--~~~~~~~~~l~~~Divi~a 91 (159)
T d1gpja2 21 SLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEA--VRFDELVDHLARSDVVVSA 91 (159)
T ss_dssp CCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEE--CCGGGHHHHHHTCSEEEEC
T ss_pred Cccc-CeEEEECCCHHHHHHHHHHHhc------CCcEEEEEcCcHHHHHHHHHhhhccc--ccchhHHHHhccCCEEEEe
Confidence 4677 9999999999999999999998 87 68888988777788888888653 1245677889999999999
Q ss_pred ecch---hHHHHHHHHHhcCCCC--cEEEEe
Q 012479 186 ISDA---AQADNYEKIFSCMKPN--SILGLS 211 (462)
Q Consensus 186 vpd~---a~~~vl~eI~~~Lk~g--aiL~~a 211 (462)
|+.. ...+.++.....-+.+ .+++|.
T Consensus 92 tss~~~ii~~~~i~~~~~~r~~~~~~~iiDl 122 (159)
T d1gpja2 92 TAAPHPVIHVDDVREALRKRDRRSPILIIDI 122 (159)
T ss_dssp CSSSSCCBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred cCCCCccccHhhhHHHHHhcccCCCeEEEee
Confidence 9843 2245666543322222 256665
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.01 E-value=2.4e-05 Score=65.79 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=62.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-HcCceecCCCcCCH---hhh-hccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDI---YET-ISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~---~ea-v~~ADvViLav 186 (462)
|+|.|+|+|.+|..+++.|.+. |++|++-+.. +...+.+. +.|.....+...+. .++ ++++|.++.++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~------g~~v~vid~d-~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDID-KDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCcceecCC-hhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 7899999999999999999999 9988766544 44455444 34543211112222 223 68999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++...--+...++..+.+..+|+.++
T Consensus 74 ~~d~~N~~~~~~~k~~~~~~iI~~~~ 99 (132)
T d1lssa_ 74 GKEEVNLMSSLLAKSYGINKTIARIS 99 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECS
T ss_pred CcHHHHHHHHHHHHHcCCceEEEEec
Confidence 98765444444555566666666544
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=9.3e-06 Score=70.69 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=59.5
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEe-cCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGL-RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~-r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
.||||||+|.+|.- +...++.. .+++++... +...+..+.+.+.|+.. ..+.++++++.|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~-----~~~~i~~v~d~~~~~~~~~~~~~~~~~----~~~~~~l~~~~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEEechhHhhhhhhhcccccc----cccchhhhhhcccccccccch
Confidence 48999999999975 56666654 156655434 44455556677777764 567888899999999999999
Q ss_pred hHHHHHHHHHh
Q 012479 190 AQADNYEKIFS 200 (462)
Q Consensus 190 a~~~vl~eI~~ 200 (462)
.+.++......
T Consensus 73 ~h~~~~~~al~ 83 (164)
T d1tlta1 73 SHFDVVSTLLN 83 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred hcccccccccc
Confidence 99988876543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.95 E-value=1.2e-05 Score=70.19 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=58.9
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-~ADvViLavpd~ 189 (462)
+||||||+|.+|.. +...|+.. .+.++++.++...+..+.+.+.++.. ...+.+++++ +.|+|++++|+.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~iD~V~I~tp~~ 73 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 73 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEECCHHHHHHHHHhccccc---ccccHHHhcccccceeccccccc
Confidence 68999999999976 56666654 14566665555556566777777642 1456777765 679999999999
Q ss_pred hHHHHHHHHHh
Q 012479 190 AQADNYEKIFS 200 (462)
Q Consensus 190 a~~~vl~eI~~ 200 (462)
.+.++..+...
T Consensus 74 ~H~~~~~~al~ 84 (167)
T d1xeaa1 74 VHSTLAAFFLH 84 (167)
T ss_dssp GHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 99998887654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.89 E-value=1.7e-05 Score=70.16 Aligned_cols=84 Identities=13% Similarity=0.149 Sum_probs=59.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCCHhhhh--ccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~eav--~~ADvViLavpd 188 (462)
.||||||+|.+|..++..|+.. + +++++...+.+ ++..+.+.+.++........+.++++ .+.|+|++++|+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-~----~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-P----NATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-C----CCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 4899999999999999999865 1 45665333443 34455667777532111246888887 457999999999
Q ss_pred hhHHHHHHHHHh
Q 012479 189 AAQADNYEKIFS 200 (462)
Q Consensus 189 ~a~~~vl~eI~~ 200 (462)
..+.++......
T Consensus 77 ~~h~~~~~~~l~ 88 (184)
T d1ydwa1 77 SLHVEWAIKAAE 88 (184)
T ss_dssp GGHHHHHHHHHT
T ss_pred hhhcchhhhhhh
Confidence 999888766543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.79 E-value=3.6e-05 Score=64.29 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=62.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--CCCcCC-Hhhh-hccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGD-IYET-ISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~~~~-~~ea-v~~ADvViLavp 187 (462)
|++.|||+|.+|..+|+.|.+. |++|++.+ .+++..+.+...|.... |.+-.+ ..++ +++||.||++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~------g~~vvvid-~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM------GHEVLAVD-INEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEE-SCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEec-CcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence 6899999999999999999999 99877654 45566666777775321 211111 2333 789999999999
Q ss_pred chhHHHHHH-HHHhcCCCCcEEEEec
Q 012479 188 DAAQADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 188 d~a~~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
+.....++- .+........++.-+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~iiar~~ 99 (134)
T d2hmva1 74 ANIQASTLTTLLLKELDIPNIWVKAQ 99 (134)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred chHHhHHHHHHHHHHcCCCcEEeecc
Confidence 776654443 3444444444555443
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.72 E-value=4.6e-05 Score=67.35 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=56.6
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavp 187 (462)
.||||||+|.+|.. ++..+++. +..++++...++ .++....+.+.|... ...+.+|+++ +.|+|++++|
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~----~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~ell~~~~id~v~I~tp 76 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLP 76 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCC
T ss_pred cEEEEEcCCHHHHHHHHHHHHhC----CCCeEEEEEEeccHhhhhhhhccccccc---eeeeeeccccccccceeecccc
Confidence 37899999999986 67778763 002455433343 334444566666542 1578889875 5799999999
Q ss_pred chhHHHHHHHHHh
Q 012479 188 DAAQADNYEKIFS 200 (462)
Q Consensus 188 d~a~~~vl~eI~~ 200 (462)
+..+.++......
T Consensus 77 ~~~h~~~~~~al~ 89 (181)
T d1zh8a1 77 VELNLPFIEKALR 89 (181)
T ss_dssp GGGHHHHHHHHHH
T ss_pred ccccccccccccc
Confidence 9999988877554
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.67 E-value=4.3e-05 Score=65.26 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=59.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--CCC--cCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT--LGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~--~~~~~eav~~ADvViLavp 187 (462)
|+|.|||+|.||.++|+.|.+. |++|++.+|+..+..+.+...+.... ... .....+.+...|+++.++|
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~------g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 76 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 76 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence 8999999999999999999999 99999999886666666655443210 000 1123456888999999999
Q ss_pred chhHHHHHHHH
Q 012479 188 DAAQADNYEKI 198 (462)
Q Consensus 188 d~a~~~vl~eI 198 (462)
......+....
T Consensus 77 ~~~~~~~~~~~ 87 (182)
T d1e5qa1 77 YTFHATVIKSA 87 (182)
T ss_dssp GGGHHHHHHHH
T ss_pred chhhhHHHHHH
Confidence 87766655543
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.49 E-value=5.3e-05 Score=66.55 Aligned_cols=84 Identities=10% Similarity=0.165 Sum_probs=57.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
.||||||+|.||..++..|++. .+++++...+.+.+. +...++.. ..+..+...+.|+|++++|+..+
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~-----~~~elvav~~~~~~~---~~~~~~~~----~~~~~~~~~~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL---DTKTPVFD----VADVDKHADDVDVLFLCMGSATD 71 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC---SSSSCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred ceEEEECChHHHHHHHHHHHhC-----CCcEEEEEEeccccc---cccccccc----chhhhhhccccceEEEeCCCccc
Confidence 4789999999999999999864 156655444433321 22234442 45667778899999999999998
Q ss_pred HHHHHHHHhcCCCCcEEEE
Q 012479 192 ADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL~~ 210 (462)
.++.... |+.|.-+++
T Consensus 72 ~~~a~~a---L~aG~~vv~ 87 (170)
T d1f06a1 72 IPEQAPK---FAQFACTVD 87 (170)
T ss_dssp HHHHHHH---HTTTSEEEC
T ss_pred HHHHHHH---HHCCCcEEE
Confidence 7766543 556765443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.46 E-value=0.0002 Score=61.91 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=44.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc----CceecCC-CcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG-TLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~----G~~~~d~-~~~~~~eav~~ADvViL 184 (462)
+||+|||.|.+|.++|..|... ++ ++++.+...++....+.+. -+...+. ...+..+.+++||+|++
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvi 80 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVI 80 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEE
Confidence 7999999999999999999988 76 5655554433333333321 1110000 01234477899999999
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+.-
T Consensus 81 tag 83 (148)
T d1ldna1 81 CAG 83 (148)
T ss_dssp CCS
T ss_pred ecc
Confidence 764
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.33 E-value=0.00016 Score=61.22 Aligned_cols=79 Identities=19% Similarity=0.152 Sum_probs=54.2
Q ss_pred CEEEEE-cccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC---ceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgII-G~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
|||+|| |.|.||.++|+.|.+. |++|+++.|+.++..+.+.+.+ ... .....+........+......+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~------G~~V~l~~R~~e~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDA-SITGMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSC-CEEEEEHHHHHHHCSEEEECSC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEeeccccccchhhhhhhhee
Confidence 689999 8999999999999999 9999999887554333333221 110 0012345556667788888888
Q ss_pred chhHHHHHHH
Q 012479 188 DAAQADNYEK 197 (462)
Q Consensus 188 d~a~~~vl~e 197 (462)
.....+....
T Consensus 74 ~~~~~~~~~~ 83 (212)
T d1jaya_ 74 WEHAIDTARD 83 (212)
T ss_dssp HHHHHHHHHH
T ss_pred eeccchHHHH
Confidence 7777765543
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.33 E-value=9.3e-05 Score=72.79 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=67.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH----cCceecCCCcCCHhhhhccCCeEEEe
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++++|||.|.|+..+++.+..-+ ++ +|.++.|..++..+.+.+ .|+.. ..+.+.++++++||+|+.+
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~-----~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v--~~~~s~~eav~~ADIi~t~ 200 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHL-----GIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITTV 200 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEEC
T ss_pred CceEEEEcccHHHHHHHHHHhhhc-----ceeeeEEEecChHHHHHHHHhhhhccCCCc--eecCCHHHHHhcCCceeec
Confidence 389999999999999999998652 45 677777765544444433 24432 1267899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
|+......++. ...++||..|.-+++.
T Consensus 201 Tas~s~~Pv~~--~~~l~pG~hI~aiGs~ 227 (340)
T d1x7da_ 201 TADKAYATIIT--PDMLEPGMHLNAVGGD 227 (340)
T ss_dssp CCCSSEEEEEC--GGGCCTTCEEEECSCC
T ss_pred cccCCCCcccc--hhhcCCCCEEeecccc
Confidence 97544333333 2468999988777665
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.31 E-value=0.00023 Score=62.40 Aligned_cols=93 Identities=20% Similarity=0.188 Sum_probs=59.2
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEE-ecC-CchhHHHHHHcCceecCCCcCCHhhh-----hccCCeEE
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVG-LRK-GSRSFAEARAAGFTEENGTLGDIYET-----ISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg-~r~-~~~s~~~A~~~G~~~~d~~~~~~~ea-----v~~ADvVi 183 (462)
.||||||+|.+|.. +.+.|++. + ..+++.. .++ .++..+.|++.|+... ..+.++. ..+.|+|+
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~-~----~~el~avas~~~~~~~~~~a~~~~i~~~---~~~~d~l~~~~~~~~iDiVf 76 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNA-K----YLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFVF 76 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC-S----SEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhC-C----cceEEEEEecchhccchhhhhhcCCccc---ccceeeeeecccccccCEEE
Confidence 48999999999985 56667665 0 2344333 333 3345678888888642 2223332 24689999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
++||...+.+-.... ..++.|..+++...
T Consensus 77 ~ATpag~h~~~~~~~-~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 77 DATSASAHVQNEALL-RQAKPGIRLIDLTP 105 (157)
T ss_dssp ECSCHHHHHHHHHHH-HHHCTTCEEEECST
T ss_pred EcCCchhHHHhHHHH-HHHHcCCEEEEccc
Confidence 999988776533221 23478988887765
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.28 E-value=0.00026 Score=64.73 Aligned_cols=84 Identities=10% Similarity=0.126 Sum_probs=56.3
Q ss_pred CEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCceecC-CCcCCHhhhhc--cCCeEEEee
Q 012479 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~d-~~~~~~~eav~--~ADvViLav 186 (462)
-+|||||+|.+|.. ++..++.. .+++++...+. .++..+.+++.|+.... ....|.+|+++ +.|+|++++
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~-----~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t 108 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 108 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred EEEEEEcCcHHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence 48999999999975 45555543 15566544444 34545666777764210 01467888875 579999999
Q ss_pred cchhHHHHHHHHHh
Q 012479 187 SDAAQADNYEKIFS 200 (462)
Q Consensus 187 pd~a~~~vl~eI~~ 200 (462)
|+..+.++..+.+.
T Consensus 109 p~~~H~~~~~~al~ 122 (221)
T d1h6da1 109 PNSLHAEFAIRAFK 122 (221)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred chhhhhhHHHHhhh
Confidence 99999988776543
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.27 E-value=0.00066 Score=58.98 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=45.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH-------cCceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
+||+|||.|..|.++|..|..+ ++ ++++.+.+.......+.. .+.........+.++++++||+|+
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~------~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence 8999999999999999988887 76 655554443333333322 111100001245678899999999
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
++.
T Consensus 82 ita 84 (154)
T d1pzga1 82 VTA 84 (154)
T ss_dssp ECC
T ss_pred Eec
Confidence 977
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.00013 Score=64.02 Aligned_cols=76 Identities=20% Similarity=0.053 Sum_probs=55.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC---ceecCCCcCCHh-hhhccCCe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIY-ETISGSDL 181 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~-eav~~ADv 181 (462)
..++| |+|.|||.|-.+.|++..|.+. |.++.+.+|+.++..+.+.... ... ..+.. ....++|+
T Consensus 14 ~~~~~-k~vlIlGaGGaarai~~al~~~------g~~i~I~nRt~~ka~~l~~~~~~~~~~~----~~~~~~~~~~~~dl 82 (170)
T d1nyta1 14 FIRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ----ALSMDELEGHEFDL 82 (170)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE----ECCSGGGTTCCCSE
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHhccc------ceEEEeccchHHHHHHHHHHHhhccccc----ccccccccccccce
Confidence 35678 9999999999999999999998 8888888887665555555432 111 12222 23467999
Q ss_pred EEEeecchhHH
Q 012479 182 VLLLISDAAQA 192 (462)
Q Consensus 182 ViLavpd~a~~ 192 (462)
||.+||.....
T Consensus 83 iIN~Tp~G~~~ 93 (170)
T d1nyta1 83 IINATSSGISG 93 (170)
T ss_dssp EEECCSCGGGT
T ss_pred eecccccCccc
Confidence 99999987543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.22 E-value=0.00026 Score=62.87 Aligned_cols=69 Identities=16% Similarity=0.093 Sum_probs=47.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec---------------CCCcCCHhhhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---------------NGTLGDIYETI 176 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~---------------d~~~~~~~eav 176 (462)
|||+|||+|-+|..+|..+ .. |++| +|++.+++..+... .|.... -....+..++.
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~------g~~V-~g~Din~~~v~~l~-~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~ 71 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SL------QNEV-TIVDILPSKVDKIN-NGLSPIQDEYIEYYLKSKQLSIKATLDSKAAY 71 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TT------TSEE-EEECSCHHHHHHHH-TTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred CEEEEECCChhHHHHHHHH-HC------CCcE-EEEECCHHHHHHHh-hcccccchhhHHHHhhhhhhhhhccchhhhhh
Confidence 7899999999999999877 46 8886 47777665444332 222100 00123556678
Q ss_pred ccCCeEEEeecch
Q 012479 177 SGSDLVLLLISDA 189 (462)
Q Consensus 177 ~~ADvViLavpd~ 189 (462)
.++|+|+++||..
T Consensus 72 ~~~~ii~v~vpt~ 84 (196)
T d1dlja2 72 KEAELVIIATPTN 84 (196)
T ss_dssp HHCSEEEECCCCC
T ss_pred hccccccccCCcc
Confidence 8999999999843
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00011 Score=58.38 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=33.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
.|+| |||.|||+|..|.+.|+.|... |.+|++.+++.
T Consensus 2 ~~~~-K~v~ViGlG~sG~s~a~~L~~~------g~~v~~~D~~~ 38 (93)
T d2jfga1 2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRM 38 (93)
T ss_dssp CCTT-CCEEEECCSHHHHHHHHHHHHT------TCCCEEEESSS
T ss_pred CcCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEeeCCc
Confidence 4789 9999999999999999999999 99998887753
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.19 E-value=0.00062 Score=58.75 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=43.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH-------cCceecCCCcCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~eav~~ADvV 182 (462)
+||+|||.|.+|.++|..|..+ |+ ++++.++...+....+.+ .+... ....+. +.+++||+|
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~------~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~--~~~~d~-~~~~~adiv 76 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKK--IYSGEY-SDCKDADLV 76 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCE--EEECCG-GGGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEeecccchhHHHHHHHhccccccCCce--EeeccH-HHhccccEE
Confidence 7999999999999999999988 75 565554443333333322 11110 012344 467899999
Q ss_pred EEeec
Q 012479 183 LLLIS 187 (462)
Q Consensus 183 iLavp 187 (462)
+++..
T Consensus 77 vitag 81 (146)
T d1ez4a1 77 VITAG 81 (146)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99863
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.09 E-value=0.00096 Score=57.21 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=42.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH--cCceecCC--CcCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEENG--TLGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G~~~~d~--~~~~~~eav~~ADvViLa 185 (462)
+||+|||.|++|.++|..|..+ ++ ++++.+...++....+.+ ++...... ......+.+++||+|+++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 75 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT 75 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEe
Confidence 5899999999999999999988 65 666655544433344433 21110000 012234678999999998
Q ss_pred e
Q 012479 186 I 186 (462)
Q Consensus 186 v 186 (462)
.
T Consensus 76 a 76 (142)
T d1y6ja1 76 A 76 (142)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.07 E-value=0.0015 Score=53.11 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH-HHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
-.|+| ++|.|||.|..|.+-++.|.++ |.+|++......+.. ..+.+.++..... ..+ ++-+.++++|+.
T Consensus 8 l~l~~-k~vlVvG~G~va~~ka~~ll~~------ga~v~v~~~~~~~~~~~~~~~~~i~~~~~-~~~-~~dl~~~~lv~~ 78 (113)
T d1pjqa1 8 CQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEG-PFD-ETLLDSCWLAIA 78 (113)
T ss_dssp ECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEES-SCC-GGGGTTCSEEEE
T ss_pred EEeCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCChHHHHHHhcCCceeecc-CCC-HHHhCCCcEEee
Confidence 46899 9999999999999999999999 888877665543333 3443333332111 122 345778999999
Q ss_pred eecchhHH-HHHHHH
Q 012479 185 LISDAAQA-DNYEKI 198 (462)
Q Consensus 185 avpd~a~~-~vl~eI 198 (462)
++.+...- ++++..
T Consensus 79 at~d~~~n~~i~~~a 93 (113)
T d1pjqa1 79 ATDDDTVNQRVSDAA 93 (113)
T ss_dssp CCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 99988774 444443
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.06 E-value=0.0012 Score=56.98 Aligned_cols=70 Identities=20% Similarity=0.288 Sum_probs=42.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH----cCceecCCC-cCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGT-LGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~----~G~~~~d~~-~~~~~eav~~ADvViL 184 (462)
|||+|||.|.+|.++|..|... |+ ++++.+....+....+.+ ..+...+.. ..+..+.+++||+||+
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVi 75 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVIS 75 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEE
Confidence 8999999999999999999987 65 555444333332222222 111100000 1123456899999999
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+..
T Consensus 76 taG 78 (146)
T d1hyha1 76 TLG 78 (146)
T ss_dssp CCS
T ss_pred ecc
Confidence 854
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.06 E-value=8.4e-05 Score=65.67 Aligned_cols=79 Identities=13% Similarity=-0.025 Sum_probs=53.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..++| ++|.|||.|-.+.|++..|.+. +-+++|..|+.++..+.++..+....-...........++|+||.+
T Consensus 14 ~~~~~-k~vlIlGaGGaarai~~aL~~~------~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~ 86 (171)
T d1p77a1 14 WLRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINA 86 (171)
T ss_dssp CCCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEEC
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHccc------CceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeec
Confidence 35678 9999999999999999999876 6788999998666566665543210000011222346789999999
Q ss_pred ecchhH
Q 012479 186 ISDAAQ 191 (462)
Q Consensus 186 vpd~a~ 191 (462)
||....
T Consensus 87 tp~g~~ 92 (171)
T d1p77a1 87 TSAGLS 92 (171)
T ss_dssp CCC---
T ss_pred cccccc
Confidence 997643
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.06 E-value=0.00079 Score=61.22 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=54.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-cCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-~ADvViL 184 (462)
..|+| +||+|.|+|++|..+|+.|.+. |.+|++.+ .+......+...|... .+.+++.. +||+++-
T Consensus 23 ~~L~g-k~v~IqG~G~VG~~~A~~L~~~------Gakvvv~d-~d~~~~~~~~~~g~~~-----~~~~~~~~~~~DI~iP 89 (201)
T d1c1da1 23 GSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVAD-TDTERVAHAVALGHTA-----VALEDVLSTPCDVFAP 89 (201)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCEE-----CCGGGGGGCCCSEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEec-chHHHHHHHHhhcccc-----cCccccccccceeeec
Confidence 46999 9999999999999999999999 98887654 4556677778888763 45666654 7898886
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
|--
T Consensus 90 cA~ 92 (201)
T d1c1da1 90 CAM 92 (201)
T ss_dssp CSC
T ss_pred ccc
Confidence 543
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.03 E-value=0.0026 Score=54.45 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=43.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc-------CceecCCCcCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~d~~~~~~~eav~~ADvV 182 (462)
|||+|||.|..|.++|..|..+ |+ ++++.+...+..+..+.+. .....-....+ .|.+++||+|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII 73 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEE
Confidence 7999999999999999999987 65 5555444433333322221 11000000223 4689999999
Q ss_pred EEeec
Q 012479 183 LLLIS 187 (462)
Q Consensus 183 iLavp 187 (462)
+++.-
T Consensus 74 vitag 78 (142)
T d1ojua1 74 VVTAG 78 (142)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99874
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.00 E-value=3.9e-05 Score=67.20 Aligned_cols=78 Identities=13% Similarity=0.230 Sum_probs=50.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd~ 189 (462)
.+|||||+|.||..++.+|.+.. +. ..-.++..+... +.+...++. ..+.+|++. +.|+|++++|+.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~-~~--~~~~~~~~~~~~---~~~~~~~~~-----~~~~~e~l~~~~iD~V~I~tp~~ 76 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPR-SA--AFLNLIGFVSRR---ELGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHH-HH--TTEEEEEEECSS---CCCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred cEEEEEcCCHHHHHHHHHHHhCC-CC--cEEEEEeccchH---HHHHhhccC-----cCCHHHHHhCCCcchhhhccccc
Confidence 48999999999999999887641 10 121223332211 111222333 357888875 568999999999
Q ss_pred hHHHHHHHHHh
Q 012479 190 AQADNYEKIFS 200 (462)
Q Consensus 190 a~~~vl~eI~~ 200 (462)
.+.++......
T Consensus 77 ~H~~~~~~al~ 87 (172)
T d1lc0a1 77 SHEDYIRQFLQ 87 (172)
T ss_dssp GHHHHHHHHHH
T ss_pred ccccccccccc
Confidence 99988776544
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.00 E-value=0.00047 Score=60.26 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=52.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
++ ++|.|||.|-.+.|++..|++. |. ++.|..|+.++....+...+... .... -..++|+||.+||
T Consensus 16 ~~-~~vlIlGaGGaarai~~aL~~~------g~~~I~I~nR~~~ka~~L~~~~~~~~----~~~~--~~~~~DliINaTp 82 (167)
T d1npya1 16 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSL--ENQQADILVNVTS 82 (167)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCC--TTCCCSEEEECSS
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCCEEEEecccHHHHHHHHHhhhhhh----hhcc--cccchhhheeccc
Confidence 56 8999999999999999999998 87 68888887666666666666653 2222 2357999999999
Q ss_pred c
Q 012479 188 D 188 (462)
Q Consensus 188 d 188 (462)
.
T Consensus 83 i 83 (167)
T d1npya1 83 I 83 (167)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.99 E-value=0.0015 Score=56.50 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=44.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc-------CceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~-------G~~~~d~~~~~~~eav~~ADvVi 183 (462)
.||+|||.|..|.++|..|..+ ++ ++++.+.........|.+. +.... -...+..+.+++||+|+
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~------~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~-v~~~~~~~~~~~advvv 76 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK-VSGSNTYDDLAGADVVI 76 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCC-EEEECCGGGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccCCcceeeecchhhhccccCCCcE-EEecccccccCCCcEEE
Confidence 6999999999999999988877 66 5555554443333333321 11100 00123457789999999
Q ss_pred Eeec
Q 012479 184 LLIS 187 (462)
Q Consensus 184 Lavp 187 (462)
++.-
T Consensus 77 itag 80 (150)
T d1t2da1 77 VTAG 80 (150)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9875
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.98 E-value=0.0029 Score=54.56 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=64.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh--------cc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI--------SG 178 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav--------~~ 178 (462)
+| .+|.|+|.|.+|...++-++.. |. +|++ .+.++...+.|++.|+... +....+..+.. ..
T Consensus 26 ~g-d~VlI~G~G~iG~~~~~~a~~~------G~~~Vi~-~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 26 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVV-TDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEE-EESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCccHHHHHHHHHHc------CCceEEe-ccCCHHHHHHHHHhCCcccccccccccccccccccccCCCC
Confidence 46 8999999999999999999988 87 5655 4455667889999997421 11112333332 25
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+|+||-++.... .++.....+++|-.+++.+
T Consensus 98 ~Dvvid~~G~~~---~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 98 PEVTIECTGAEA---SIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp CSEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred ceEEEeccCCch---hHHHHHHHhcCCCEEEEEe
Confidence 899999998643 4455566778887766554
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.95 E-value=0.0013 Score=54.67 Aligned_cols=73 Identities=11% Similarity=0.176 Sum_probs=56.8
Q ss_pred CEEEEEcc----cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
|+|+|||. +..|..+.++|++. |++|+- .....+. -.|... ..++.|+-..-|++++++|
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~------g~~V~p-VnP~~~~-----i~G~~~----y~sl~~lp~~~D~vvi~vp 65 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLP-VNPNYDE-----IEGLKC----YRSVRELPKDVDVIVFVVP 65 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEE-ECTTCSE-----ETTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC------CCEEEE-Ecccccc-----ccCccc----cccchhccccceEEEEEeC
Confidence 78999994 57799999999999 998654 3332221 247764 5678887777899999999
Q ss_pred chhHHHHHHHHHh
Q 012479 188 DAAQADNYEKIFS 200 (462)
Q Consensus 188 d~a~~~vl~eI~~ 200 (462)
++...++++++..
T Consensus 66 ~~~~~~~l~~~~~ 78 (116)
T d1y81a1 66 PKVGLQVAKEAVE 78 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998654
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.95 E-value=0.0016 Score=55.58 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc--C-----ceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA--G-----FTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~--G-----~~~~d~~~~~~~eav~~ADvVi 183 (462)
+||+|||.|..|.++|..|... ++ +++..+...+..+..+.+. . ....-....+. +.+++||+|+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~------~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvv 74 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIV 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEE
Confidence 6999999999999999999887 66 6555444444333333331 1 10000002334 4578999999
Q ss_pred Eeec
Q 012479 184 LLIS 187 (462)
Q Consensus 184 Lavp 187 (462)
++..
T Consensus 75 itag 78 (142)
T d1uxja1 75 VTSG 78 (142)
T ss_dssp ECCS
T ss_pred Eeee
Confidence 9984
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.91 E-value=0.0012 Score=57.92 Aligned_cols=74 Identities=18% Similarity=0.142 Sum_probs=46.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc--CceecCC---CcCCHhhhhcc
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEENG---TLGDIYETISG 178 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~--G~~~~d~---~~~~~~eav~~ 178 (462)
..++. +||+|||.|.+|.++|..|..+ |+ ++++.+...+.....|.+. ....... ......+.+++
T Consensus 16 ~~~~~-~KV~IIGaG~VG~~~A~~l~~~------~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~ 88 (160)
T d1i0za1 16 ATVPN-NKITVVGVGQVGMACAISILGK------SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTAN 88 (160)
T ss_dssp CCCCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTT
T ss_pred ccCCC-CeEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhccc
Confidence 45566 8999999999999999999998 77 5655554433333333221 1100000 01223467889
Q ss_pred CCeEEEee
Q 012479 179 SDLVLLLI 186 (462)
Q Consensus 179 ADvViLav 186 (462)
||+|+++.
T Consensus 89 adiVVitA 96 (160)
T d1i0za1 89 SKIVVVTA 96 (160)
T ss_dssp CSEEEECC
T ss_pred ccEEEEec
Confidence 99999965
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.90 E-value=0.0011 Score=56.53 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=43.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc--C--ceecCC--CcCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEENG--TLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~d~--~~~~~~eav~~ADvVi 183 (462)
+||+|||.|.+|.++|..|..+ ++ ++...+....+....+... - +...+. ...+..+++++||+|+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~------~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvv 74 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEK------QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVI 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEE
Confidence 6899999999999999999988 65 5655554443333222221 0 000000 0234467889999999
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
++.
T Consensus 75 ita 77 (142)
T d1guza1 75 ITA 77 (142)
T ss_dssp ECC
T ss_pred EEE
Confidence 995
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=96.89 E-value=0.00094 Score=61.22 Aligned_cols=84 Identities=8% Similarity=0.142 Sum_probs=55.5
Q ss_pred CEEEEEcccch----HHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 012479 112 NQIGVIGWGSQ----GPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~m----G~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViL 184 (462)
.||||||+|.+ +..+..+++.. ..+++++...+.+ .+..+.+++.++.. .....+.+|+++ +-|+|++
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~----~~~~~ivav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~iD~V~i 91 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 91 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred eEEEEEecCccccHHHHHHHHHHHhc----CCCeEEEEEEcCCHHHHHHHHHhccccc-ceeecchhhcccccccceeec
Confidence 58999999984 45666677653 1146666434443 34455666776542 112468888875 5789999
Q ss_pred eecchhHHHHHHHHHh
Q 012479 185 LISDAAQADNYEKIFS 200 (462)
Q Consensus 185 avpd~a~~~vl~eI~~ 200 (462)
++|+..+.++......
T Consensus 92 ~tp~~~h~~~~~~al~ 107 (237)
T d2nvwa1 92 SVKVPEHYEVVKNILE 107 (237)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cCCCcchhhHHHHHHH
Confidence 9999999988775443
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.87 E-value=0.0019 Score=56.51 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=43.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc-------CceecCCCcCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~d~~~~~~~eav~~ADvV 182 (462)
.||+|||.|.+|.++|..|... |+ ++++.+.........+.+. +... .....+ .+.+++||+|
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~------~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~-~~~~~d-~~~~~~adiv 91 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLK------GLADELALVDADTDKLRGEALDLQHGSLFLSTPK-IVFGKD-YNVSANSKLV 91 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCE-EEEESS-GGGGTTEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCchhhhccHHHHhCcchhcCCCe-EEeccc-hhhhccccEE
Confidence 7999999999999999999988 76 5655544433322222221 1110 001223 4567899999
Q ss_pred EEeec
Q 012479 183 LLLIS 187 (462)
Q Consensus 183 iLavp 187 (462)
+++.-
T Consensus 92 vitag 96 (159)
T d2ldxa1 92 IITAG 96 (159)
T ss_dssp EECCS
T ss_pred EEecc
Confidence 99874
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.87 E-value=0.0023 Score=54.94 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=43.0
Q ss_pred EEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcC----ceecC--CCcCCHhhhhccCCeEE
Q 012479 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEEN--GTLGDIYETISGSDLVL 183 (462)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G----~~~~d--~~~~~~~eav~~ADvVi 183 (462)
||+|||+ |.+|.++|..|... ++ ++++.+ .+. ....|.+.- +.... -...+..|++++||+|+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~------~~~~elvLiD-i~~-~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivV 73 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYD-IAH-TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVV 73 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEE-SSS-HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEE
T ss_pred eEEEECCCChHHHHHHHHHHhC------CccceEEEEe-ccc-cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEE
Confidence 8999995 99999999999988 76 444444 332 233343321 10000 01245678899999999
Q ss_pred Eeec
Q 012479 184 LLIS 187 (462)
Q Consensus 184 Lavp 187 (462)
++.-
T Consensus 74 itag 77 (144)
T d1mlda1 74 IPAG 77 (144)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 9853
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.86 E-value=0.00044 Score=66.88 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=64.6
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhH---HHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~---~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.++++|||.|.|+..+++.|.... .+ +|.|+.|..++.. +.....++.. ..+.++++.+||+|+.+|
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~-----~i~~i~v~~r~~e~~~~~~~~~~~~~~~~----~~~~~~a~~~aDiV~taT 195 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVF-----DIGEVKAYDVREKAAKKFVSYCEDRGISA----SVQPAEEASRCDVLVTTT 195 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHHHTTCCE----EECCHHHHTSSSEEEECC
T ss_pred ccEEEEecCcccHHHHHHHHHHHh-----hhhhcccccCCHHHHHHHHHHHHhcCCcc----ccchhhhhccccEEEEec
Confidence 378999999999999999998651 34 6777777644332 3333345543 456788899999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
+-. ..+++ ...++||+.|..++.+..
T Consensus 196 ~s~--~P~~~--~~~l~~G~hv~~iGs~~p 221 (320)
T d1omoa_ 196 PSR--KPVVK--AEWVEEGTHINAIGADGP 221 (320)
T ss_dssp CCS--SCCBC--GGGCCTTCEEEECSCCST
T ss_pred cCc--ccccc--hhhcCCCCeEeecCCccc
Confidence 842 11222 246889998887776543
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.84 E-value=0.0011 Score=56.66 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=43.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH----cCceecCCCcCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+||+|||.|+.|.++|..|..+ ++ ++...+....+....+.+ ..+........+..+++++||+|+++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 74 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVA 74 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEe
Confidence 6999999999999999999887 65 555444443333333322 11110000022335678999999999
Q ss_pred e
Q 012479 186 I 186 (462)
Q Consensus 186 v 186 (462)
.
T Consensus 75 a 75 (140)
T d1a5za1 75 A 75 (140)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.83 E-value=0.0014 Score=55.35 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=65.1
Q ss_pred CEEEEEcc----cchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|+|||. |..|..+.++|++. | .+|+-.+.+. +. -.|... +.++.|+=...|++++++
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~------~~g~v~pVnP~~-~~-----i~G~~~----y~sl~dlp~~vDlvvi~v 72 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKVYPVNIKE-EE-----VQGVKA----YKSVKDIPDEIDLAIIVV 72 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEEEEECSSC-SE-----ETTEEC----BSSTTSCSSCCSEEEECS
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHc------CCCcEEEeccCc-cc-----cCCeEe----ecchhhcCCCCceEEEec
Confidence 89999996 88999999999875 4 3554444332 21 246664 677888777889999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|++...+++++.... .-..++.+++||.
T Consensus 73 p~~~~~~~~~~~~~~-g~~~~vi~s~Gf~ 100 (129)
T d2csua1 73 PKRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (129)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred ChHHhHHHHHHHHHc-CCCEEEEeccccc
Confidence 999999999986643 2345788899983
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.83 E-value=0.0018 Score=57.65 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=57.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-hHHHHHHcC-----------------ceecCCCcCCH
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAG-----------------FTEENGTLGDI 172 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-s~~~A~~~G-----------------~~~~d~~~~~~ 172 (462)
|-||||.|+|.||+.+++.|.++ .+++++.-.+..+. ........+ +.. ..+.
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-----~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v----~g~~ 71 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV----AGTV 71 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCC----CCCH
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-----CCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceec----CCch
Confidence 45899999999999999999876 14676555554332 222222222 221 3456
Q ss_pred hhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
.++..++|+|+-|||.....+-.+ .|++.|+=+++++
T Consensus 72 ~~~~~~vDiViecTG~f~~~e~a~---~hl~~G~KvIi~~ 108 (178)
T d1b7go1 72 EDLIKTSDIVVDTTPNGVGAQYKP---IYLQLQRNAIFQG 108 (178)
T ss_dssp HHHHHHCSEEEECCSTTHHHHHHH---HHHHTTCEEEECT
T ss_pred hhhhhcCCEEEECCCCcCCHHHHH---HHHHcCCEEEEEC
Confidence 777789999999999876655444 3444554344443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.71 E-value=0.0019 Score=56.21 Aligned_cols=95 Identities=11% Similarity=0.060 Sum_probs=61.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhcc-----CC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISG-----SD 180 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~~-----AD 180 (462)
.-+| .+|.|+|+|.+|...++-++.. |..+++..+.++...+.+++.|.... +....+..+.+++ .|
T Consensus 26 ~~~g-~~VlI~G~G~iG~~~~~~ak~~------g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D 98 (174)
T d1f8fa2 26 VTPA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN 98 (174)
T ss_dssp CCTT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred CCCC-CEEEEeCCCHHHhhhhhccccc------ccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence 3356 8999999999999999999988 87666666666677889999886321 1112233343322 68
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+||-++.... .+++....++++-.+++.
T Consensus 99 ~vid~~G~~~---~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 99 FALESTGSPE---ILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEEECSCCHH---HHHHHHHTEEEEEEEEEC
T ss_pred EEEEcCCcHH---HHHHHHhcccCceEEEEE
Confidence 8888887543 233334455565555443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.60 E-value=0.00061 Score=60.62 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=64.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC---ceecCCCcCCHhhhhccCCeEEEeec-
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS- 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~eav~~ADvViLavp- 187 (462)
-|+.|||.|.-|..=++..+.- |-+|.+.+.+.+ ..+..+... +.........+++.+++||+||-++-
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~l------GA~V~~~D~~~~-~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINVE-RLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred cEEEEECCChHHHHHHHHHhhC------CCEEEEEeCcHH-HHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeec
Confidence 5999999999999888888777 888887766533 344443332 11100011235788999999998764
Q ss_pred -chhHHHHH-HHHHhcCCCCcEEEEec
Q 012479 188 -DAAQADNY-EKIFSCMKPNSILGLSH 212 (462)
Q Consensus 188 -d~a~~~vl-~eI~~~Lk~gaiL~~a~ 212 (462)
-...+.++ ++....||||++|+|.+
T Consensus 106 pG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 106 PGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCcccCeeecHHHHhhcCCCcEEEEee
Confidence 33334455 46888999999999875
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.57 E-value=0.0089 Score=50.98 Aligned_cols=94 Identities=15% Similarity=0.108 Sum_probs=61.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec---CCCcCCHhh---hh-----
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---NGTLGDIYE---TI----- 176 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~---d~~~~~~~e---av----- 176 (462)
-.| .+|.|+|.|.+|...++-++.. |.+|++..+ ++...+.|++.|.... +....+..+ .+
T Consensus 25 ~~g-~~vlV~G~G~vG~~~~~~ak~~------Ga~vi~v~~-~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 25 QLG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVCTAR-SPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEES-CHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCC-CEEEEEcccccchhhHhhHhhh------cccccccch-HHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 356 8999999999999999999988 888766544 4556888998886320 111112222 12
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 177 ~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
..+|+||-++... ..++.....++++-.++..+
T Consensus 97 ~g~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 97 DLPNVTIDCSGNE---KCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECS
T ss_pred cCCceeeecCCCh---HHHHHHHHHHhcCCceEEEe
Confidence 2479999888754 33444445677777666543
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.57 E-value=0.002 Score=54.70 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=80.1
Q ss_pred CEEEEEcc----cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
|+|+|||. +..|..+.++|++. |++++...-+. +. ..-.|... ..+..|.-..-|+|++++|
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~------g~~~~~v~~~~-~~---~~i~g~~~----~~~l~~i~~~iD~v~v~~p 79 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVLPVNPRF-QG---EELFGEEA----VASLLDLKEPVDILDVFRP 79 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEEEECGGG-TT---SEETTEEC----BSSGGGCCSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcC------CCCceEEEecc-cc---ceeeceec----ccchhhccCCCceEEEecc
Confidence 88999996 68999999999999 98876654321 10 01146654 5677777677899999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhh
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~ 249 (462)
++...+++++.... ... .+.+..|+.-..+.+ +.-..+++|| +|||+.-.-.++|.
T Consensus 80 ~~~v~~~v~~~~~~-g~k-~i~~q~G~~~~e~~~--~a~~~Gi~vV--~~~C~~ie~~rl~~ 135 (136)
T d1iuka_ 80 PSALMDHLPEVLAL-RPG-LVWLQSGIRHPEFEK--ALKEAGIPVV--ADRCLMVEHKRLFR 135 (136)
T ss_dssp HHHHTTTHHHHHHH-CCS-CEEECTTCCCHHHHH--HHHHTTCCEE--ESCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh-CCC-eEEEecCccCHHHHH--HHHHcCCEEE--cCCccHHHHHHhhC
Confidence 99999999986543 233 355667763111111 1112467777 78888777777775
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.50 E-value=0.0019 Score=55.43 Aligned_cols=70 Identities=23% Similarity=0.210 Sum_probs=43.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH--cC--ceec-CCCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEE-NGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~-d~~~~~~~eav~~ADvViL 184 (462)
.||+|||.|++|.++|..|..+ ++ ++++.+....+....+.+ +. +... .-...+..+.+++||+|++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~------~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVi 75 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI 75 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEE
Confidence 5899999999999999999988 76 555544443332222221 11 1100 0001233467889999999
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+.-
T Consensus 76 taG 78 (143)
T d1llda1 76 TAG 78 (143)
T ss_dssp CCC
T ss_pred ecc
Confidence 863
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.39 E-value=0.0026 Score=57.17 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=62.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC---CCcC------------------
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---GTLG------------------ 170 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d---~~~~------------------ 170 (462)
-+|.|||.|..|..=++-.+.- |-+|.+.+.+ ....++.+..|-...+ ....
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~l------GA~V~v~D~~-~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVR-AATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-STTHHHHHHTTCEECCC-----------------------C
T ss_pred cEEEEEcCcHHHHHHHHHHHHc------CCEEEEEecc-HHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence 4899999999998877766666 8888776554 4456666666532100 0000
Q ss_pred ----CHhhhhccCCeEEEee--cchhHHHHHH-HHHhcCCCCcEEEEec
Q 012479 171 ----DIYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 171 ----~~~eav~~ADvViLav--pd~a~~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
.+.+.+++||+||-++ |-...+.++. +....||||++|+|.+
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 1234588999999655 4444444554 6888999999999886
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.0011 Score=58.49 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=51.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchh---HHHHHHcC----ceecCCCcCC---Hhh
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRS---FAEARAAG----FTEENGTLGD---IYE 174 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s---~~~A~~~G----~~~~d~~~~~---~~e 174 (462)
..++| ++|.|||.|-.|.|++..|.+. |. ++++.+|..++. ...+++.+ ....-....+ ..+
T Consensus 14 ~~l~~-k~vlIlGaGGaarai~~al~~~------g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (182)
T d1vi2a1 14 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 86 (182)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHhhc------CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence 35788 9999999999999999999998 77 677778764422 22232221 1100000122 345
Q ss_pred hhccCCeEEEeecchh
Q 012479 175 TISGSDLVLLLISDAA 190 (462)
Q Consensus 175 av~~ADvViLavpd~a 190 (462)
.+..+|+||.+||...
T Consensus 87 ~~~~~diiIN~Tp~G~ 102 (182)
T d1vi2a1 87 ALASADILTNGTKVGM 102 (182)
T ss_dssp HHHTCSEEEECSSTTS
T ss_pred hhcccceeccccCCcc
Confidence 6789999999999653
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.31 E-value=0.0072 Score=48.30 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=55.6
Q ss_pred CCEEEEEcccchH-HHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec-c
Q 012479 111 INQIGVIGWGSQG-PAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS-D 188 (462)
Q Consensus 111 ikkIgIIG~G~mG-~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp-d 188 (462)
+++|=|||.|=.| .++|+-|++. |++|...+.......+..++.|+... .....+-++++|+||...- +
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~------G~~VsGSD~~~~~~~~~L~~~Gi~v~---~g~~~~~i~~~d~vV~S~AI~ 78 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIY---IGHAEEHIEGASVVVVSSAIK 78 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEE---ESCCGGGGTTCSEEEECTTSC
T ss_pred CCEEEEEEECHHHHHHHHHHHHhC------CCEEEEEeCCCChhhhHHHHCCCeEE---ECCccccCCCCCEEEECCCcC
Confidence 3999999999999 6779999999 99987776665555667777898652 3344556788998877543 3
Q ss_pred hhHHHHHH
Q 012479 189 AAQADNYE 196 (462)
Q Consensus 189 ~a~~~vl~ 196 (462)
....++..
T Consensus 79 ~~npel~~ 86 (96)
T d1p3da1 79 DDNPELVT 86 (96)
T ss_dssp TTCHHHHH
T ss_pred CCCHHHHH
Confidence 33444443
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.26 E-value=0.007 Score=51.58 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=63.4
Q ss_pred CEEEEEcc----cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
++|+|||. +..|..++.+|++. |++|+-.+.+ .. .-.|... ..++.|+-..-|+|++++|
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~------g~~v~pVnP~-~~-----~i~G~~~----~~sl~dlp~~iD~v~i~vp 83 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEH------GYDVYPVNPK-YE-----EVLGRKC----YPSVLDIPDKIEVVDLFVK 83 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTT-CS-----EETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHC------CCEEEEECCc-cc-----ccCCCcc----cccccccCccceEEEEEeC
Confidence 89999995 57899999999999 9986543332 21 2256664 6788887778999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
++.+.++++++... ....++...++++
T Consensus 84 ~~~~~~~~~e~~~~-g~k~v~~~~G~~~ 110 (139)
T d2d59a1 84 PKLTMEYVEQAIKK-GAKVVWFQYNTYN 110 (139)
T ss_dssp HHHHHHHHHHHHHH-TCSEEEECTTCCC
T ss_pred HHHHHHHHHHHHHh-CCCEEEEeccccC
Confidence 99999999986653 2333344445553
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.20 E-value=0.003 Score=55.25 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=61.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav------~~AD 180 (462)
-+| .+|.|+|+|-+|...++-++.. |...++..+.+++..+.|++.|.... +....+..+.+ +..|
T Consensus 26 ~~g-~~VlI~GaG~vGl~~~q~ak~~------Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D 98 (174)
T d1jqba2 26 EMG-SSVVVIGIGAVGLMGIAGAKLR------GAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVD 98 (174)
T ss_dssp CTT-CCEEEECCSHHHHHHHHHHHTT------TCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEE
T ss_pred CCC-CEEEEEcCCcchhhhhhhhhcc------cccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcc
Confidence 457 8999999999999999999988 87434455555666889999996320 11112233332 2379
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||-++.-.. .+++....++++-.+++.+
T Consensus 99 ~vid~~g~~~---~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 99 RVIMAGGGSE---TLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred eEEEccCCHH---HHHHHHHHHhcCCEEEEEe
Confidence 9999997533 3344345566766666543
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.16 E-value=0.0063 Score=51.01 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=65.5
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHHhhhhhcCCcEEEEEecCCc------hhHHHHHH----cCceec
Q 012479 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS------RSFAEARA----AGFTEE 165 (462)
Q Consensus 106 ~~l~gikkIgIIG~----------G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~------~s~~~A~~----~G~~~~ 165 (462)
+.+++ +||+|+|+ ++....++..|... |.+|.+.+..-+ ...+.... .+...
T Consensus 9 ~~~~~-kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~- 80 (136)
T d1mv8a3 9 TSHDT-RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK------GYELRIFDRNVEYARVHGANKEYIESKIPHVSSLL- 80 (136)
T ss_dssp TTSSC-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTB-
T ss_pred HhcCC-CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh------hccccccCCCCCHHHHhhhhhhhhhhcccccccee-
Confidence 45667 99999997 67888899999988 988877653100 00111110 11111
Q ss_pred CCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
..+..++++++|+|+++++.....+ +...++++.+|.|.-|+
T Consensus 81 ---~~~~~e~i~~~D~ivi~t~h~~f~~----l~~~~~~~~~I~D~~~~ 122 (136)
T d1mv8a3 81 ---VSDLDEVVASSDVLVLGNGDELFVD----LVNKTPSGKKLVDLVGF 122 (136)
T ss_dssp ---CSCHHHHHHHCSEEEECSCCGGGHH----HHHSCCTTCEEEESSSC
T ss_pred ---ehhhhhhhhhceEEEEEeCCHHHHH----HHHHhcCCCEEEECCCC
Confidence 4689999999999999999887654 44456778899998776
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.08 E-value=0.0053 Score=53.33 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=57.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCcCCHhhh---h------
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET---I------ 176 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~ea---v------ 176 (462)
-+| .+|.|+|.|.+|...++-++.. |. +|++.. .++...+.+++.|.... +....+..+. +
T Consensus 27 ~~G-~~VlV~GaG~iG~~~~~~ak~~------Ga~~Vi~~~-~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~ 98 (182)
T d1vj0a2 27 FAG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIA-GSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHG 98 (182)
T ss_dssp CBT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEE-SCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTT
T ss_pred CCC-CEEEEECCCccchhheeccccc------ccccccccc-cccccccccccccceEEEeccccchHHHHHHHHHhhCC
Confidence 457 9999999999999999999988 87 565544 45566789999886310 1111222222 1
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 177 ~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
...|+||-++.-.. .++.....+++|-.+++.
T Consensus 99 ~g~Dvvid~vG~~~---~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 99 RGADFILEATGDSR---ALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp SCEEEEEECSSCTT---HHHHHHHHEEEEEEEEEC
T ss_pred CCceEEeecCCchh---HHHHHHHHhcCCCEEEEE
Confidence 13688887776422 233334455566555443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.017 Score=48.58 Aligned_cols=74 Identities=15% Similarity=0.052 Sum_probs=49.8
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh---HHHHHHcCceecCCCcCCHh----hhhccCCeEEEe
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIY----ETISGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s---~~~A~~~G~~~~d~~~~~~~----eav~~ADvViLa 185 (462)
.|-|+|||..|..+++.|.+. |.++++......+. .+.....|+....+...+.+ .-+++||.||++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~------~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHc------CCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 589999999999999999998 88877765543332 23334456633212122321 236789999999
Q ss_pred ecchhHH
Q 012479 186 ISDAAQA 192 (462)
Q Consensus 186 vpd~a~~ 192 (462)
+++....
T Consensus 79 ~~~d~~n 85 (153)
T d1id1a_ 79 SDNDADN 85 (153)
T ss_dssp SSCHHHH
T ss_pred cccHHHH
Confidence 9987554
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0088 Score=51.40 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=53.8
Q ss_pred CCEEEEEcc-cchHHHHHHHHHHhhhhhcCC-cEEEEEecCCc--hhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
||||||||. |..|.-+.+.|.+.. .+. .++.....+.+ +............ .....+..+++|++|+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~---~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~----~~~~~~~~~~~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEER---DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ----DAFDLEALKALDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---GGGGSEEEEEESSSTTSBCCGGGTCCCBCE----ETTCHHHHHTCSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCC---CCCeeEEEEeeccccccccccccCCceeee----cccchhhhhcCcEEEEec
Confidence 689999996 999999998766430 001 14433322211 1111111111110 111234578999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
|.+...++.+++... ..+.+|++.++.
T Consensus 74 ~~~~s~~~~~~~~~~-g~~~~VID~Ss~ 100 (146)
T d1t4ba1 74 GGDYTNEIYPKLRES-GWQGYWIDAASS 100 (146)
T ss_dssp CHHHHHHHHHHHHHT-TCCCEEEECSST
T ss_pred CchHHHHhhHHHHhc-CCCeecccCCcc
Confidence 988888877776542 222356666653
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=96.00 E-value=0.0063 Score=56.27 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=51.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh-hccCCeEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVL 183 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea-v~~ADvVi 183 (462)
.+.|+| ++|+|-|+|++|...|+.|.+. |.++++.+.+...........|... .+.++. -.+|||++
T Consensus 34 ~~~l~g-~~v~IqG~GnVG~~~a~~L~~~------Gakvv~~d~~~~~~~~~~~~~g~~~-----~~~~~~~~~~cDIl~ 101 (230)
T d1leha1 34 SDSLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGADA-----VAPNAIYGVTCDIFA 101 (230)
T ss_dssp SCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCEE-----CCGGGTTTCCCSEEE
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEeecccHHHHHHHHHhcCCcc-----cCCcccccccccEec
Confidence 366899 9999999999999999999998 9887766554333334444456653 344443 34789988
Q ss_pred Eeecc
Q 012479 184 LLISD 188 (462)
Q Consensus 184 Lavpd 188 (462)
-|--.
T Consensus 102 PcA~~ 106 (230)
T d1leha1 102 PCALG 106 (230)
T ss_dssp ECSCS
T ss_pred ccccc
Confidence 76543
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.94 E-value=0.0026 Score=55.51 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=51.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC----cee-cCCCcCCHhhhhccCC
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTE-ENGTLGDIYETISGSD 180 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G----~~~-~d~~~~~~~eav~~AD 180 (462)
..++| |+|.|||.|-.+.|++..|.+. | +|.|..|..++..+.+.... ... ..-...+.......+|
T Consensus 14 ~~~~~-k~vlIlGaGG~arai~~aL~~~------~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 85 (177)
T d1nvta1 14 GRVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVD 85 (177)
T ss_dssp CCCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCC
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHccc------c-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhh
Confidence 34789 9999999999999999999765 6 78888887555444433221 000 0000234555677899
Q ss_pred eEEEeecch
Q 012479 181 LVLLLISDA 189 (462)
Q Consensus 181 vViLavpd~ 189 (462)
+||.++|..
T Consensus 86 liIn~tp~g 94 (177)
T d1nvta1 86 IIINATPIG 94 (177)
T ss_dssp EEEECSCTT
T ss_pred hhccCCccc
Confidence 999999964
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.0036 Score=55.11 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=48.5
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---HhhhhccCCeEEEee
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvViLav 186 (462)
||||.|+| .|.+|.+++..|.++ |++|++..|+.++.... ...++....+...+ ..++++++|+||.++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~------g~~V~~~~R~~~~~~~~-~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~ 75 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------cCEEEEEEcChhhcccc-cccccccccccccchhhHHHHhcCCCEEEEEe
Confidence 59999999 699999999999999 99988887764432111 12333221111223 456789999999887
Q ss_pred c
Q 012479 187 S 187 (462)
Q Consensus 187 p 187 (462)
.
T Consensus 76 g 76 (205)
T d1hdoa_ 76 G 76 (205)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.89 E-value=0.012 Score=49.42 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=64.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|||+|+|+ |.||.+++..+.+. +++++.+.+.+ ..+.+.++|+||=-+.|+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~------~~~l~~~id~~---------------------~~~~~~~~DVvIDFS~p~~ 53 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK------GHELVLKVDVN---------------------GVEELDSPDVVIDFSSPEA 53 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEEETT---------------------EEEECSCCSEEEECSCGGG
T ss_pred CEEEEECCCCHHHHHHHHHHhcC------CCeEEEEECCC---------------------cHHHhccCCEEEEecCHHH
Confidence 68999996 99999999988888 88876665421 1233567899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCC
Q 012479 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
..+.++....+=+ .+|+=+.|++-..++. .....+.+++ ..+||.+
T Consensus 54 ~~~~l~~~~~~~~--p~ViGTTG~~~~~~~~-i~~~ak~~pv-~~a~N~s 99 (128)
T d1vm6a3 54 LPKTVDLCKKYRA--GLVLGTTALKEEHLQM-LRELSKEVPV-VQAYSRT 99 (128)
T ss_dssp HHHHHHHHHHHTC--EEEECCCSCCHHHHHH-HHHHTTTSEE-EECSCTH
T ss_pred HHHHHHHHHhcCC--CEEEEcCCCCHHHHHH-HHHHHhhCCE-EeeeccC
Confidence 9888886544322 2555566875333221 0112344444 3466665
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.82 E-value=0.014 Score=51.25 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=56.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCC--------------cCCHhhh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGT--------------LGDIYET 175 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~--------------~~~~~ea 175 (462)
|++|||-|+|.||+.+.+.|.++. .++++.-.+.. ......+...++...... ..+..++
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~-----di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 75 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQD-----DMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSS-----SEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCC-----CceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh
Confidence 689999999999999999887760 35655444433 222344555554320000 1234556
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 176 v~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
.+++|+|+=|||-....+-.+ +|++.|.-+++.
T Consensus 76 ~~~vDvViEcTG~f~~~~~~~---~hl~~G~K~vi~ 108 (171)
T d1cf2o1 76 LDEADIVIDCTPEGIGAKNLK---MYKEKGIKAIFQ 108 (171)
T ss_dssp HHTCSEEEECCSTTHHHHHHH---HHHHTTCEEEEC
T ss_pred hcCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEE
Confidence 678999999999876554433 344455444443
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.79 E-value=0.019 Score=49.98 Aligned_cols=74 Identities=18% Similarity=0.071 Sum_probs=40.3
Q ss_pred CEEEEEcccchHH--HHHHHHHHhhhhhcCCc-EEEEEecCCch-hHHHH---------HHcCceecCCCcCCHhhhhcc
Q 012479 112 NQIGVIGWGSQGP--AQAQNLRDSLAEAKSDI-VVKVGLRKGSR-SFAEA---------RAAGFTEENGTLGDIYETISG 178 (462)
Q Consensus 112 kkIgIIG~G~mG~--AiA~~Lrds~~~~g~G~-~Vivg~r~~~~-s~~~A---------~~~G~~~~d~~~~~~~eav~~ 178 (462)
+||+|||.|+.|. +++.-++.. + .... +++ -.+.++. ....+ ...+....-....|..+++++
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~-~--~~~~~eI~-L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g 77 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRY-H--ELPVGELW-LVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 77 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTT-T--TCCEEEEE-EECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred cEEEEECCChhhHHHHHHHHHHhc-c--ccCCCEEE-EEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC
Confidence 6899999999874 444444443 1 1112 444 4443331 11111 112222101124677889999
Q ss_pred CCeEEEeecch
Q 012479 179 SDLVLLLISDA 189 (462)
Q Consensus 179 ADvViLavpd~ 189 (462)
||+|+++....
T Consensus 78 aDvVv~ta~~~ 88 (169)
T d1s6ya1 78 ADFVTTQFRVG 88 (169)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEccccC
Confidence 99999999643
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.76 E-value=0.01 Score=50.87 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=41.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCCc--hhHHHHHH----cCceecCC----CcCCHhhhhcc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARA----AGFTEENG----TLGDIYETISG 178 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~--~s~~~A~~----~G~~~~d~----~~~~~~eav~~ 178 (462)
|||+|||. |.+|.++|..|..+ ++ ++.+.+.... +.+..+.+ .-....+. ...+..+.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE------PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC------TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhcc
Confidence 68999995 99999999999988 75 5555554321 11111211 11110000 01224568899
Q ss_pred CCeEEEee
Q 012479 179 SDLVLLLI 186 (462)
Q Consensus 179 ADvViLav 186 (462)
||+|+++.
T Consensus 75 aDvVVitA 82 (145)
T d1hyea1 75 SDVVIITS 82 (145)
T ss_dssp CSEEEECC
T ss_pred ceEEEEec
Confidence 99999983
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.52 E-value=0.041 Score=47.76 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=57.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCc-C-CHhhhh-----ccC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-G-DIYETI-----SGS 179 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~-~-~~~eav-----~~A 179 (462)
-+| .+|.|+|+|-+|...++-++.. |...++..+.++...+.|++.|.... +... . ...+.. ..+
T Consensus 27 ~~G-~~VlV~G~G~iGl~a~~~ak~~------Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~ 99 (174)
T d1e3ia2 27 TPG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 99 (174)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CCC-CEEEEECCChHHHHHHHHHHHh------CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCC
Confidence 356 8999999999999999999988 87545555555667899999997431 1000 1 111112 357
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCC
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPN 205 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~g 205 (462)
|+||-++.... .+++-...++++
T Consensus 100 d~vie~~G~~~---~~~~a~~~~~~g 122 (174)
T d1e3ia2 100 DYSLDCAGTAQ---TLKAAVDCTVLG 122 (174)
T ss_dssp SEEEESSCCHH---HHHHHHHTBCTT
T ss_pred cEEEEecccch---HHHHHHHHhhcC
Confidence 89988887543 344444455554
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.51 E-value=0.02 Score=45.13 Aligned_cols=66 Identities=20% Similarity=0.068 Sum_probs=50.7
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+||=|||.|=+|. ++|+-|++. |+.|...++...+..+..++.|+... .....+-++++|+||...
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~------G~~VsGSD~~~~~~t~~L~~~Gi~i~---~gh~~~~i~~~d~vV~Ss 68 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN------GNDVYGSNIEETERTAYLRKLGIPIF---VPHSADNWYDPDLVIKTP 68 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCCEE---SSCCTTSCCCCSEEEECT
T ss_pred cEEEEEeECHHHHHHHHHHHHhC------CCeEEEEeCCCChhHHHHHHCCCeEE---eeecccccCCCCEEEEec
Confidence 7899999999987 789999999 99988777666666677888898642 223345568899987754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.45 E-value=0.041 Score=46.72 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=62.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-C--CCcCCHhhhh-----ccC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N--GTLGDIYETI-----SGS 179 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d--~~~~~~~eav-----~~A 179 (462)
-+| .+|.|+|.|-+|...++-++.. |..+++..+.+++..+.+++.|.... + +...+..+.+ ..+
T Consensus 27 ~~G-~tVlI~GaGGvG~~aiq~ak~~------G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~ 99 (176)
T d2fzwa2 27 EPG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 99 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCC-CEEEEecchhHHHHHHHHHHHH------hcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCC
Confidence 357 8999999999999999999988 87556666666777899999996421 0 0011222222 357
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|+||-++..... ++.....+++|..+...
T Consensus 100 D~vid~~G~~~~---~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 100 DYSFECIGNVKV---MRAALEACHKGWGVSVV 128 (176)
T ss_dssp SEEEECSCCHHH---HHHHHHTBCTTTCEEEE
T ss_pred cEeeecCCCHHH---HHHHHHhhcCCceeEEE
Confidence 999999876543 33344456666544433
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.40 E-value=0.023 Score=49.93 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=52.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceec---C-----------CCcCCHhhhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEE---N-----------GTLGDIYETI 176 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~---d-----------~~~~~~~eav 176 (462)
.||||.|+|.||+.+.+.|.+.. .++++.-++..+ .....+.+.++... + ....+..++.
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~-----dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQD-----DMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCT-----TEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHhCC-----CceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh
Confidence 68999999999999999998651 456654444332 33344555554210 0 0023456667
Q ss_pred ccCCeEEEeecchhHHHHHH
Q 012479 177 SGSDLVLLLISDAAQADNYE 196 (462)
Q Consensus 177 ~~ADvViLavpd~a~~~vl~ 196 (462)
+++|+|+=|++.....+-.+
T Consensus 78 ~~vDvViEcTG~f~~~~~~~ 97 (172)
T d2czca2 78 EKVDIIVDATPGGIGAKNKP 97 (172)
T ss_dssp TTCSEEEECCSTTHHHHHHH
T ss_pred ccCCEEEECCCCCCCHHHHH
Confidence 78999999999877665554
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.39 E-value=0.012 Score=50.48 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=56.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh-----ccCCeE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDLV 182 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav-----~~ADvV 182 (462)
.| .+|.|+|.|.+|...++-++.. |..+++..+.++...+.+++.|.... +....+.++.. ...|+|
T Consensus 32 ~g-~~vli~GaG~vG~~~~~~a~~~------g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 32 PG-AYVAIVGVGGLGHIAVQLLKVM------TPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CC-CEEEEeCCChHHHHHHHHHHhh------cCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEE
Confidence 46 8999999999999999999888 76555565665666888888876320 10001111122 135777
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
|-++.... .++.....++++-.++.
T Consensus 105 id~~g~~~---~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 105 MDFVGSQA---TVDYTPYLLGRMGRLII 129 (172)
T ss_dssp EESSCCHH---HHHHGGGGEEEEEEEEE
T ss_pred EEecCcch---HHHHHHHHHhCCCEEEE
Confidence 77766533 23444455555554443
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.016 Score=49.46 Aligned_cols=71 Identities=23% Similarity=0.186 Sum_probs=40.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--Cc--eecCC-CcCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GF--TEENG-TLGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~--~~~d~-~~~~~~eav~~ADvViLa 185 (462)
|||+|||. |.+|.++|..|...+ +..-++...+ ..+.....+.+. .. ..... ...+..+++++||+|+++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~---~~~~el~L~D-~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYD-IAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTCEEEEEC-SSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCC---CCCcEEEEec-ccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEEC
Confidence 69999995 999999998875330 1122555444 333333333331 10 00000 012345678999999998
Q ss_pred e
Q 012479 186 I 186 (462)
Q Consensus 186 v 186 (462)
.
T Consensus 77 a 77 (145)
T d2cmda1 77 A 77 (145)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.34 E-value=0.025 Score=46.33 Aligned_cols=92 Identities=13% Similarity=0.184 Sum_probs=56.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh---h-hhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---e-av~~ADvViLavp 187 (462)
|-|-|+|||..|..+++.|+.. + +++-. .++...+.....|+..-.+...+.+ + -+.+|+.|+++++
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~------~--i~vi~-~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~ 71 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGS------E--VFVLA-EDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLE 71 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGG------G--EEEEE-SCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHcCC------C--CEEEE-cchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence 4578999999999999999765 4 33333 3444566667778643222222322 1 2688999999999
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEEec
Q 012479 188 DAAQADNYEKIFSCMKPN-SILGLSH 212 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-aiL~~a~ 212 (462)
+....-..-.....+.|. .+++-+.
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 72 SDSETIHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp SHHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred chhhhHHHHHHHHHHCCCceEEEEEc
Confidence 877654333322233333 3555443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.21 E-value=0.028 Score=47.63 Aligned_cols=93 Identities=19% Similarity=0.217 Sum_probs=58.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh----ccCCeE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLV 182 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav----~~ADvV 182 (462)
-+| .+|.|+|.|.+|...++-++.. |.+|++.. .++...+.+++.|.... +....+..+.+ ...|.+
T Consensus 26 ~~g-~~VlV~GaG~vG~~~~~~ak~~------G~~Vi~~~-~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 26 RPG-QWVAISGIGGLGHVAVQYARAM------GLHVAAID-IDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEE-SCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEE
T ss_pred CCC-CEEEEeeccccHHHHHHHHHHc------CCccceec-chhhHHHhhhccCccccccccchhHHHHHHHhhcCCccc
Confidence 356 8999999999999999999888 88876655 44556788999886420 11112333322 234555
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+.++... +.++...+.++++-.++..
T Consensus 98 i~~~~~~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 98 LVTAVSN---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EECCSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred ccccccc---hHHHHHHHHhcCCcEEEEE
Confidence 5555442 3455555666666555544
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.16 E-value=0.044 Score=46.63 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHHh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds 133 (462)
+||+|||. |.+|.+++..|...
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~ 27 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAG 27 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc
Confidence 59999996 99999999999876
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=95.14 E-value=0.052 Score=47.32 Aligned_cols=75 Identities=21% Similarity=0.080 Sum_probs=40.3
Q ss_pred CEEEEEcccchHHHHH-HHHHHhhhhhcCCcEEEEEecCCchhHH-HHH-------HcCceecCCCcCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQA-QNLRDSLAEAKSDIVVKVGLRKGSRSFA-EAR-------AAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA-~~Lrds~~~~g~G~~Vivg~r~~~~s~~-~A~-------~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
.||+|||.|+.|.+.+ ..+....++- .+-+++. .+.+++..+ .++ ..+....-....+..|++++||+|
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l-~~~eivL-~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEF-PIRKLKL-YDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTS-CEEEEEE-ECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhc-CCCEEEE-EcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 6899999999986533 3333321110 0114444 444443222 111 112210001245788999999999
Q ss_pred EEeecc
Q 012479 183 LLLISD 188 (462)
Q Consensus 183 iLavpd 188 (462)
|++.-.
T Consensus 82 vitag~ 87 (167)
T d1u8xx1 82 MAHIRV 87 (167)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 999854
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.018 Score=50.61 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=57.6
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|.|||-+. .|..++.-|... |..|.+.... ..+..+.+++||+||.
T Consensus 33 i~l~G-K~v~VIGrS~~VG~Pla~lL~~~------gatVt~~h~~-------------------t~~l~~~~~~ADivI~ 86 (166)
T d1b0aa1 33 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 86 (166)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred ccccc-ceEEEEeccccccHHHHHHHHHh------hccccccccc-------------------cchhHHHHhhhhHhhh
Confidence 45889 9999999885 999999999888 8887665322 2356677899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ...+|+|++|++++
T Consensus 87 a~G~p~~---i~--~~~vk~g~vvIDvG 109 (166)
T d1b0aa1 87 AVGKPGF---IP--GDWIKEGAIVIDVG 109 (166)
T ss_dssp CSCCTTC---BC--TTTSCTTCEEEECC
T ss_pred hccCccc---cc--ccccCCCcEEEecC
Confidence 9974322 11 35689999888875
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.08 E-value=0.0078 Score=51.68 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=57.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCC-cCCH-hhhhccCCeEEEe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDI-YETISGSDLVLLL 185 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~~~-~eav~~ADvViLa 185 (462)
+| .+|.|+|.|.+|...++-++.. |.+|++..++ +...+.|++.|.... +.. ..+. +......|+|+.+
T Consensus 27 ~g-~~vlI~GaG~vG~~a~q~ak~~------G~~vi~~~~~-~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 27 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRS-SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCCcchhHHHHhhhc------cccccccccc-hhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence 56 9999999999999999998888 9888765554 456889999886320 000 0111 1233456888777
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+...... .++.....++++-.++..
T Consensus 99 ~~~~~~~-~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 99 ASSLTDI-DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp CSCSTTC-CTTTGGGGEEEEEEEEEC
T ss_pred ecCCccc-hHHHHHHHhhccceEEEe
Confidence 6532211 123344555665444433
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.08 E-value=0.028 Score=47.32 Aligned_cols=92 Identities=14% Similarity=0.197 Sum_probs=60.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhh----hhccCCeEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDLVL 183 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~e----av~~ADvVi 183 (462)
+| .+|.|+|.|.+|...++.++.. |.+|++.. .++...+.+++.|+... +....+..+ ..++.|.++
T Consensus 27 ~g-~~vlv~G~G~iG~~a~~~a~~~------g~~v~~~~-~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 27 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAVD-IGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeecccchhhhhHHHhcC------CCeEeccC-CCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEE
Confidence 56 8999999999999999998888 88876554 44556788999987431 111122222 234456666
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+.+.. ...++.....++++..+++.
T Consensus 99 ~~~~~---~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 99 VTAVS---KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp ESSCC---HHHHHHHHHHEEEEEEEEEC
T ss_pred eecCC---HHHHHHHHHHhccCCceEec
Confidence 66553 34556666677777766654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.07 E-value=0.041 Score=46.88 Aligned_cols=73 Identities=12% Similarity=0.025 Sum_probs=41.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHHh-hhhhcCCc-EEEEEecCCchhHHHHHH------cCce---ecCCCcCCHhhhhccC
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDI-VVKVGLRKGSRSFAEARA------AGFT---EENGTLGDIYETISGS 179 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds-~~~~g~G~-~Vivg~r~~~~s~~~A~~------~G~~---~~d~~~~~~~eav~~A 179 (462)
+||+|||. |..|.++|..|... + .+... ..++-.+.+ +...+++. +... ..-....+..++++++
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~--~~~~~~~~L~l~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSV--FGKDQPIILVLLDIT-PMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL 80 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTT--TCTTCCEEEEEECCG-GGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHh--cCCCCccEEEEecCc-cchhhhhhhhhhhcccccccccccccCcccccccCCc
Confidence 69999995 99999999998764 0 00011 122233322 22222221 1110 0000135677899999
Q ss_pred CeEEEeec
Q 012479 180 DLVLLLIS 187 (462)
Q Consensus 180 DvViLavp 187 (462)
|+||++--
T Consensus 81 dvVVitag 88 (154)
T d5mdha1 81 DVAILVGS 88 (154)
T ss_dssp SEEEECCS
T ss_pred eEEEEecc
Confidence 99999873
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.06 E-value=0.026 Score=48.08 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=40.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc--EEEEEecCC--chhHHHHHHc----Cceec-CCCcCCHhhhhccCCe
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAA----GFTEE-NGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~--~~s~~~A~~~----G~~~~-d~~~~~~~eav~~ADv 181 (462)
.||+||| .|.+|.++|..|..+ ++ ++++.+... ...+..+.+. .+... .-...+. +.+++||+
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~------~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDi 73 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDV 73 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSE
T ss_pred CeEEEECCCCcHHHHHHHHHHhC------CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCE
Confidence 3899999 699999999999988 66 454443221 1222222221 11100 0012343 45689999
Q ss_pred EEEee
Q 012479 182 VLLLI 186 (462)
Q Consensus 182 ViLav 186 (462)
|+++.
T Consensus 74 Vvita 78 (142)
T d1o6za1 74 VVITA 78 (142)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99974
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.94 E-value=0.081 Score=45.58 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=52.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCC--Hhhhh-----c
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD--IYETI-----S 177 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~--~~eav-----~ 177 (462)
+.-+| .+|.|+|+|-+|...++.++.. |...++..+.+++..+.|++.|.... |-...+ .++.. .
T Consensus 24 ~~~~G-~~VlV~GaGgvGl~a~~~ak~~------G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 24 KVTPG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHc------CCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCC
Confidence 34567 8999999999999999999988 87545566666777899999997531 100111 22222 2
Q ss_pred cCCeEEEeecch
Q 012479 178 GSDLVLLLISDA 189 (462)
Q Consensus 178 ~ADvViLavpd~ 189 (462)
..|+||-++...
T Consensus 97 G~d~vid~~g~~ 108 (174)
T d1p0fa2 97 GVDYAVECAGRI 108 (174)
T ss_dssp CBSEEEECSCCH
T ss_pred CCcEEEEcCCCc
Confidence 468888877653
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=94.86 E-value=0.026 Score=49.43 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=52.9
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----C--ceecCC-CcCCHhhhhc
Q 012479 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G--FTEENG-TLGDIYETIS 177 (462)
Q Consensus 106 ~~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G--~~~~d~-~~~~~~eav~ 177 (462)
..|+| |+|-|.| .|-+|.++|+.|.+. |.+|++..|+.++..+.+... . +...|- ...+.++++.
T Consensus 19 ~~l~g-K~vlItGasgGIG~~ia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 19 GSVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp SCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHhh------ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhc
Confidence 67899 9999999 689999999999999 999988888755544443332 1 111010 0123556788
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
++|+||.+..
T Consensus 92 ~iDilin~Ag 101 (191)
T d1luaa1 92 GAHFVFTAGA 101 (191)
T ss_dssp TCSEEEECCC
T ss_pred CcCeeeecCc
Confidence 8999988765
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.84 E-value=0.031 Score=49.49 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=65.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC-CCcCCHhhhh------ccC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETI------SGS 179 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d-~~~~~~~eav------~~A 179 (462)
.-.| .+|.|+|+|.+|...++-++.. |...++..+.++...+.|++.|..... ....+..+.+ ..+
T Consensus 23 v~~G-~tVlV~GaG~vGl~a~~~ak~~------ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~ 95 (195)
T d1kola2 23 VGPG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEV 95 (195)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred CCCC-CEEEEECcCHHHHHHHHHHHhh------cccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCc
Confidence 3456 8999999999998888888877 664444455556668999999975421 1112332222 247
Q ss_pred CeEEEeecch------------hHHHHHHHHHhcCCCCcEEEEec
Q 012479 180 DLVLLLISDA------------AQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 180 DvViLavpd~------------a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|++|-++--+ ...+.++.....++++-.|++.+
T Consensus 96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 9999888522 13456777777788887776654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.021 Score=48.72 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=59.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCC---HhhhhccCCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~---~~eav~~ADvVi 183 (462)
-.| .+|.|+|.|.+|...++-++.. |.++++..++. +..+.+++.|.... + ..+ .....+..|++|
T Consensus 29 ~~G-~~VlI~GaG~vG~~a~qlak~~------Ga~~i~~~~~~-~~~~~a~~lGad~~i~--~~~~~~~~~~~~~~D~vi 98 (168)
T d1uufa2 29 GPG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTSE-AKREAAKALGADEVVN--SRNADEMAAHLKSFDFIL 98 (168)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSG-GGHHHHHHHTCSEEEE--TTCHHHHHTTTTCEEEEE
T ss_pred CCC-CEEEEeccchHHHHHHHHhhcc------cccchhhccch-hHHHHHhccCCcEEEE--CchhhHHHHhcCCCceee
Confidence 356 8999999999999999999988 98877665554 45788888886320 1 111 122345688999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
-++..... ++.....++++-.++..
T Consensus 99 d~~g~~~~---~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 99 NTVAAPHN---LDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp ECCSSCCC---HHHHHTTEEEEEEEEEC
T ss_pred eeeecchh---HHHHHHHHhcCCEEEEe
Confidence 88874332 23334455565555444
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.04 Score=48.44 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=57.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| |+|.|||-+ ..|..+|.-|.+. |..|.+.... ..+..+.+++||+||.
T Consensus 35 i~l~G-k~vvVIGrS~iVGrPLa~lL~~~------gatVt~~~~~-------------------t~~l~~~~~~aDivi~ 88 (170)
T d1a4ia1 35 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV 88 (170)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred ccccc-ceEEEEecCCccchHHHHHHHhc------cCceEEEecc-------------------cccHHHHHhhccchhh
Confidence 35899 999999987 5999999999988 8777765432 2345567889999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... ++ ..++++|.+|++++
T Consensus 89 a~G~~~~---i~--~~~vk~g~iviDvg 111 (170)
T d1a4ia1 89 ATGQPEM---VK--GEWIKPGAIVIDCG 111 (170)
T ss_dssp CCCCTTC---BC--GGGSCTTCEEEECC
T ss_pred ccccccc---cc--cccccCCCeEeccC
Confidence 9985332 22 35689999988884
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=94.63 E-value=0.033 Score=48.01 Aligned_cols=75 Identities=13% Similarity=0.015 Sum_probs=42.6
Q ss_pred CEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCchhHHHHHH-------cCceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
+||+|||.|+.|.+++.... ...++ ...-++.. .|.++...+.+.+ ..... ....+.++++++||+|+
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~-~~~~el~L-~Did~~k~~~~~d~~~~~~~~~~~~--~~t~~~~~~l~~aDvVV 76 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISED-VRIDEVIF-YDIDEEKQKIVVDFVKRLVKDRFKV--LISDTFEGAVVDAKYVI 76 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTT-SCCCEEEE-ECSCHHHHHHHHHHHHHHHTTSSEE--EECSSHHHHHTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccc-cCccEEEE-EecCcHHHHHHHHHHHhhhccCceE--EEecCcccccCCCCEEE
Confidence 68999999999988775422 21000 00124544 4444433332222 12211 11456788999999999
Q ss_pred Eeecchh
Q 012479 184 LLISDAA 190 (462)
Q Consensus 184 Lavpd~a 190 (462)
+..-...
T Consensus 77 ita~~~~ 83 (162)
T d1up7a1 77 FQFRPGG 83 (162)
T ss_dssp ECCCTTH
T ss_pred EecccCC
Confidence 9876543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.62 E-value=0.11 Score=44.80 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=40.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCce
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (462)
-+| .+|.|+|.|-+|...++.++.. |...++..+.+++.++.|++.|..
T Consensus 28 ~~g-~tVlI~G~GgvGl~ai~~ak~~------G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 28 KPG-STCVVFGLGGVGLSVIMGCKSA------GASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCC-CEEEEECCCchhHHHHHHHHHc------CCceEEEecCcHHHHHHHHhcCCc
Confidence 356 8999999999999999999988 864445666667779999999975
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.55 E-value=0.11 Score=44.29 Aligned_cols=78 Identities=23% Similarity=0.335 Sum_probs=52.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CC-Cc-CCHhhhh-----cc
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NG-TL-GDIYETI-----SG 178 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~-~~-~~~~eav-----~~ 178 (462)
--+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+++.|.... +. .. ....+.. ..
T Consensus 26 vk~G-dtVlV~GaGG~G~~~~~~~~~~------g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G 98 (176)
T d2jhfa2 26 VTQG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGG 98 (176)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHc------CCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCC
Confidence 3467 8999999999999999999988 76444555555666889999987531 00 00 1112211 24
Q ss_pred CCeEEEeecchhH
Q 012479 179 SDLVLLLISDAAQ 191 (462)
Q Consensus 179 ADvViLavpd~a~ 191 (462)
.|+||-++.....
T Consensus 99 ~D~vid~~G~~~~ 111 (176)
T d2jhfa2 99 VDFSFEVIGRLDT 111 (176)
T ss_dssp BSEEEECSCCHHH
T ss_pred CCEEEecCCchhH
Confidence 7999888876544
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.012 Score=51.17 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=68.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH---HH-----HHHcCceecCCCcCCHhhhhccCCeE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AE-----ARAAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~---~~-----A~~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
.||+|+|+ |.||.++++.+... .+++++.+.++..... +. ....+... ..+.+++.+.+|+|
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~-----~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~----~~~~~~~~~~~DVi 75 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 75 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecccchhccchhhhhhccccCCcee----eccHHHHhcccceE
Confidence 68999996 99999999988765 1566655554322110 00 00122222 35667788999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCc-EEEEeccchHHHhhhccccCCCCccEEecccCCC
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
|=-+.|+...+.++....+ +. +|+=+.||+-..+.. .....+++++ ..+||..
T Consensus 76 IDFs~p~~~~~~~~~a~~~---~~~~ViGTTG~~~~~~~~-i~~~a~~ipi-~~apN~S 129 (162)
T d1diha1 76 IDFTRPEGTLNHLAFCRQH---GKGMVIGTTGFDEAGKQA-IRDAAADIAI-VFAANFS 129 (162)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCEEEECCCCCCHHHHHH-HHHHTTTSCE-EECSCCC
T ss_pred EEeccHHHHHHHHHHHHhc---cceeEEecCCCcHHHHHH-HHHHcCCCCE-EEEcccc
Confidence 9999998888887754432 33 455566775322211 0112345554 5668865
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.41 E-value=0.13 Score=43.43 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=51.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCC-cC-CHhhhh-----cc
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LG-DIYETI-----SG 178 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~-~~~eav-----~~ 178 (462)
.-+| .+|.|+|.|-+|...++.++.. |-..++..+..+...+.+++.|.... +.. .. ...+.. ..
T Consensus 26 ~k~g-~~VlI~G~Gg~g~~~~~~~~~~------g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G 98 (175)
T d1cdoa2 26 VEPG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGG 98 (175)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCC-CEEEEEecCCccchHHHHHHHH------hhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCC
Confidence 3456 8999999999999999999887 66445566666667899999997421 000 00 112221 24
Q ss_pred CCeEEEeecchhH
Q 012479 179 SDLVLLLISDAAQ 191 (462)
Q Consensus 179 ADvViLavpd~a~ 191 (462)
.|+|+-++-....
T Consensus 99 ~d~vid~~G~~~~ 111 (175)
T d1cdoa2 99 VDFSLECVGNVGV 111 (175)
T ss_dssp BSEEEECSCCHHH
T ss_pred cceeeeecCCHHH
Confidence 7888888875433
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.36 E-value=0.039 Score=46.83 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=54.3
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee-cCCCcCCHhhhh------ccCC
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETI------SGSD 180 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~-~d~~~~~~~eav------~~AD 180 (462)
+| .+|.|+|. |.+|...++-++.. |...++..+.+++..+.+++.|... .+....+..+.+ ...|
T Consensus 27 ~g-~~vlV~G~~G~vG~~~~~~~~~~------g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 27 PT-KTLLVVGAGGGLGTMAVQIAKAV------SGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHH------TCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEEeccccceeeeeeccccc------ccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccch
Confidence 45 89999995 99999999988887 7633444455566688888888631 011112222221 2256
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+|+-++.... .++.....++++-.++..
T Consensus 100 ~vid~~g~~~---~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 100 AVIDLNNSEK---TLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp EEEESCCCHH---HHTTGGGGEEEEEEEEEC
T ss_pred hhhcccccch---HHHhhhhhcccCCEEEEe
Confidence 6666665322 233334455555544433
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=94.27 E-value=0.022 Score=48.98 Aligned_cols=95 Identities=13% Similarity=0.002 Sum_probs=52.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHHh--hhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDS--LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds--~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
||||||| .|..|.-+.+.|.+. ++ ..++.....+ ++..+....+............+..+++|+||+|+|.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p----~~~i~~~ss~--~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~ 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTS--QIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGG 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESS--CCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCC----ceEEEEeccc--cccccccccCCcceeeecccchhhhccccEEEEecCc
Confidence 6899999 689999988877643 00 1243322211 1111111111110000011223557899999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
....++.+++... ..+..|+|.++
T Consensus 75 ~~s~~~~~~l~~~-g~~~~VIDlSs 98 (147)
T d1mb4a1 75 SYTEKVYPALRQA-GWKGYWIDAAS 98 (147)
T ss_dssp HHHHHHHHHHHHT-TCCSEEEESSS
T ss_pred hHHHHHhHHHHHc-CCceEEEeCCc
Confidence 9888888776543 12235666655
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.17 E-value=0.035 Score=48.34 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=42.8
Q ss_pred CEEEEEcccchHHHHH--HHHHHhhhhhcCCcEEEEEecCCchhHHH--------HHHcCceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQA--QNLRDSLAEAKSDIVVKVGLRKGSRSFAE--------ARAAGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA--~~Lrds~~~~g~G~~Vivg~r~~~~s~~~--------A~~~G~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|+.|.+.+ ..|... + ...+.+++. .+.+++..+. ....+....-....|.+|++++||+
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~-~-~l~~~eivL-~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~ 79 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKT-P-GLSGSTVTL-MDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF 79 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC-G-GGTTCEEEE-ECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred cEEEEECCCHHHhHHHHHHHHHhc-c-ccCCCEEEE-EeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCe
Confidence 7999999999997643 233322 0 000225544 4444432211 1112221000114688999999999
Q ss_pred EEEeecchhHH
Q 012479 182 VLLLISDAAQA 192 (462)
Q Consensus 182 ViLavpd~a~~ 192 (462)
|++.+-.....
T Consensus 80 Vv~~~~~g~~~ 90 (171)
T d1obba1 80 VINTAMVGGHT 90 (171)
T ss_dssp EEECCCTTHHH
T ss_pred Eeeeccccccc
Confidence 99987654443
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.062 Score=47.20 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=35.0
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 101 f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++.. ..-+. |+|+|||.|.-|.+-|..|.+. |++|.+..+.
T Consensus 35 ~~~~-~~~~~-k~V~IIGaGPAGL~AA~~la~~------G~~Vtl~E~~ 75 (179)
T d1ps9a3 35 MPIL-PAVQK-KNLAVVGAGPAGLAFAINAAAR------GHQVTLFDAH 75 (179)
T ss_dssp SCCC-SCSSC-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred cccC-CCCCC-cEEEEECccHHHHHHHHHHHhh------ccceEEEecc
Confidence 4433 56667 9999999999999999999999 9999998765
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=94.08 E-value=0.17 Score=44.15 Aligned_cols=70 Identities=23% Similarity=0.084 Sum_probs=40.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCC--cEEEEEecCCchh--HHHHHH--cC-------ceecCCCcCCHhhhhc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRS--FAEARA--AG-------FTEENGTLGDIYETIS 177 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G--~~Vivg~r~~~~s--~~~A~~--~G-------~~~~d~~~~~~~eav~ 177 (462)
-||.|+|. |.+|.+++..|.... =.|.. +.+...+...... ...+.+ +. ... ..+..++++
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~-v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~----~~~~~~~~~ 99 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGE-VFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI----GIDPYEVFE 99 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-TTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE----ESCHHHHTT
T ss_pred cEEEEECCCcHHHHHHHHHHHcCc-ccCCCceEEEEEecCccccchhcchhhhhcccccccccCccc----cccchhhcc
Confidence 58999996 999999999998640 00111 1222222221111 112211 11 121 457789999
Q ss_pred cCCeEEEee
Q 012479 178 GSDLVLLLI 186 (462)
Q Consensus 178 ~ADvViLav 186 (462)
++|+||++-
T Consensus 100 ~aDvVvi~a 108 (175)
T d7mdha1 100 DVDWALLIG 108 (175)
T ss_dssp TCSEEEECC
T ss_pred CCceEEEee
Confidence 999999987
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=93.96 E-value=0.062 Score=48.75 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=55.4
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
-|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|+..+..+..++.|-.. ..-.+|+
T Consensus 2 ~l~g-K~alItGas~GIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~Dl---- 60 (241)
T d2a4ka1 2 RLSG-KTILVTGAASGIGRAALDLFARE------GASLVAVDREERLLAEAVAALEAEA----------IAVVADV---- 60 (241)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTCCSSE----------EEEECCT----
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCce----------EEEEecC----
Confidence 3789 9999999775 999999999999 9999888876544333333332110 0112333
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
..++.+.++++++...+.+=.+|+..+|.
T Consensus 61 s~~~~i~~~~~~i~~~~g~iDiLinnAg~ 89 (241)
T d2a4ka1 61 SDPKAVEAVFAEALEEFGRLHGVAHFAGV 89 (241)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEEGGGG
T ss_pred CCHHHHHHHHHHHHHHhCCccEecccccc
Confidence 33455667777776665443456655554
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.92 E-value=0.037 Score=46.51 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=30.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~ 147 (462)
-.|+| |+|.|||.|.+|..-+..|.+. |.+|+|..
T Consensus 9 ~~l~g-krvLViGgG~va~~ka~~Ll~~------GA~VtVva 43 (150)
T d1kyqa1 9 HQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVS 43 (150)
T ss_dssp ECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEE
T ss_pred eeeCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEe
Confidence 44899 9999999999999999999998 88777654
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=93.62 E-value=0.08 Score=46.52 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=53.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEe--cCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL--RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~--r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
|+|||||| .|..|.-+.+-|.+. . .+++.... +...+........-.....-...+.++..+++|+|++++|
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P----~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p 75 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALP 75 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCS
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-C----CceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccc
Confidence 58999999 789999988877654 1 33443322 2222323222111010000012456667778999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
...-.+... .. .+..|+|.++
T Consensus 76 ~~~s~~~~~----~~-~~~~VIDlSa 96 (176)
T d1vkna1 76 AGASYDLVR----EL-KGVKIIDLGA 96 (176)
T ss_dssp TTHHHHHHT----TC-CSCEEEESSS
T ss_pred cHHHHHHHH----hh-ccceEEecCc
Confidence 887655443 33 4566776665
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.55 E-value=0.013 Score=48.66 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=52.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh-hccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea-v~~ADvViLavpd~a 190 (462)
.+|.|+|+|+.|.+++..++.+ .+++++...+.+++.... .-.|+.+. ...+.++. .+..+++++++|...
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~-----~~~~iv~fiDdd~~k~G~-~I~Gi~V~--~~~~l~~~~~~~i~iai~~i~~~~ 75 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFG-----ESFELRGFFDVDPEKVGR-PVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA 75 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC-----SSEEEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred ceEEEEcCCHHHHHHHHhHhhc-----CCcEEEEEEeCchHhcCC-EECCEEEe--cHHHHHHHHhhcccEEEEeCCHHH
Confidence 3799999999999999877543 167877777765532211 11355431 01223333 345789999999988
Q ss_pred HHHHHHHHHh
Q 012479 191 QADNYEKIFS 200 (462)
Q Consensus 191 ~~~vl~eI~~ 200 (462)
..++++.+..
T Consensus 76 ~~~I~d~l~~ 85 (126)
T d2dt5a2 76 AQKAADLLVA 85 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887554
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=93.07 E-value=0.044 Score=47.08 Aligned_cols=87 Identities=23% Similarity=0.200 Sum_probs=58.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhh------hhccCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE------TISGSD 180 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~e------av~~AD 180 (462)
-+| ++|.|.|. |.+|....+-++.. |.+|++..++ ++..+.+++.|... +.+..+ .-+.+|
T Consensus 26 ~~g-~~VlI~ga~G~vG~~aiqlak~~------G~~vi~~~~~-~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~D 93 (171)
T d1iz0a2 26 RPG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEE----AATYAEVPERAKAWGGLD 93 (171)
T ss_dssp CTT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSE----EEEGGGHHHHHHHTTSEE
T ss_pred CCC-CEEEEEeccccchhhhhhhhccc------cccccccccc-ccccccccccccce----eeehhhhhhhhhcccccc
Confidence 367 89999995 99999999888888 8888776665 44577888888743 222222 224578
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+|+=++.+. +++....++++-.++..
T Consensus 94 ~v~d~~G~~-----~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 94 LVLEVRGKE-----VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEEECSCTT-----HHHHHTTEEEEEEEEEC
T ss_pred ccccccchh-----HHHHHHHHhcCCcEEEE
Confidence 888877632 34455667776655443
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.85 E-value=0.031 Score=47.44 Aligned_cols=91 Identities=12% Similarity=0.015 Sum_probs=54.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHHh-hhhhcCCcEEEEEecC--CchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds-~~~~g~G~~Vivg~r~--~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
+||||||. |..|.-+.+-|.+. ++ ..++.....+ ..+.. ..+.... .......+...++|++|+++|
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP----~~~l~~~~s~~~~Gk~i----~~~~~~~-~~~~~~~~~~~~~d~vf~a~p 73 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFP----LHRLHLLASAESAGQRM----GFAESSL-RVGDVDSFDFSSVGLAFFAAA 73 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC----CSCEEEEECTTTTTCEE----EETTEEE-ECEEGGGCCGGGCSEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCC----ceEEEEEeecccCCcce----eeccccc-hhccchhhhhccceEEEecCC
Confidence 68999996 99999999988643 10 1244322211 11111 1111100 001112345788999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.....++..++. ..|..|+|.++.
T Consensus 74 ~~~s~~~~~~~~---~~g~~VID~Ss~ 97 (144)
T d2hjsa1 74 AEVSRAHAERAR---AAGCSVIDLSGA 97 (144)
T ss_dssp HHHHHHHHHHHH---HTTCEEEETTCT
T ss_pred cchhhhhccccc---cCCceEEeechh
Confidence 888877777654 467788887774
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.84 E-value=0.022 Score=50.27 Aligned_cols=97 Identities=12% Similarity=0.059 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----cCceecC-CCcCCHhhhhcc
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN-GTLGDIYETISG 178 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----~G~~~~d-~~~~~~~eav~~ 178 (462)
..++| |++.|||-++ .|..+|.-|... |..|.+.............. .+..... .+.....+.+.+
T Consensus 25 ~~l~G-K~vvVIGrS~iVG~Pla~lL~~~------gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~ 97 (171)
T d1edza1 25 NRLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLD 97 (171)
T ss_dssp CTTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred CCCCC-CEEEEECCccccHHHHHHHHHHC------CCEEEEeccccccccccccceeeeeeccccccccchhHHhhcccc
Confidence 57999 9999999875 599999999988 87776654432211000000 0000000 000125667779
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
||+||.+++..... +. .+++|+|++++|++.
T Consensus 98 aDIvIsavG~p~~~--i~--~d~ik~GavvIDvGi 128 (171)
T d1edza1 98 SDVVITGVPSENYK--FP--TEYIKEGAVCINFAC 128 (171)
T ss_dssp CSEEEECCCCTTCC--BC--TTTSCTTEEEEECSS
T ss_pred CCEEEEccCCCccc--cC--hhhcccCceEeeccc
Confidence 99999999864320 00 246799999998874
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.70 E-value=0.051 Score=46.83 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
|||+|||.|.-|.+-|..|++. |++|.|..+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~------G~~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIH------GLNVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------SCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 9999999999999999999999 9998887653
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=92.57 E-value=0.13 Score=47.17 Aligned_cols=87 Identities=14% Similarity=0.048 Sum_probs=55.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.++..+.+++.|-.. ..-.+|+
T Consensus 2 dL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~Dv---- 60 (254)
T d1hdca_ 2 DLSG-KTVIITGGARGLGAEAARQAVAA------GARVVLADVLDEEGAATARELGDAA----------RYQHLDV---- 60 (254)
T ss_dssp CCCC-SEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTTGGGE----------EEEECCT----
T ss_pred CCCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCce----------EEEEccc----
Confidence 4899 999999977 5999999999999 9999888876544333333322110 0112343
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++.....+=.+|+..+|+
T Consensus 61 ~~~~~v~~~~~~~~~~~g~iDilVnnAg~ 89 (254)
T d1hdca_ 61 TIEEDWQRVVAYAREEFGSVDGLVNNAGI 89 (254)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCccEEEecCcc
Confidence 34455567777766544322356777776
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.50 E-value=0.16 Score=43.04 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=58.1
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav------~~AD 180 (462)
+| .+|.|+|. |.+|.+..+-++.. |.+|++..++ ++..+.+++.|.... |....+..+.+ +..|
T Consensus 28 ~g-~~VlV~Ga~G~vG~~aiq~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 28 AG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp TT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CC-CEEEEEecccccccccccccccc------Cccccccccc-ccccccccccCcccccccccccHHHHhhhhhccCCce
Confidence 57 89999995 99999999988888 9888776664 445788888887421 11112333332 2367
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
+|+-++... .++...+.++++-.++.
T Consensus 100 ~v~d~~g~~----~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 100 IIIEMLANV----NLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp EEEESCHHH----HHHHHHHHEEEEEEEEE
T ss_pred EEeecccHH----HHHHHHhccCCCCEEEE
Confidence 777776532 34555555666555443
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=92.49 E-value=0.062 Score=46.57 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=29.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
+||.|||.|..|.+.|..|.+. |++|.|..+.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~------G~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARK------GYSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7899999999999999999999 9999888764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.31 E-value=0.1 Score=47.71 Aligned_cols=90 Identities=20% Similarity=0.158 Sum_probs=54.4
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.|+| |++-|.| .+-||.++|+.|.+. |.+|++..|+.++ .+.+.+. +.. .......+ .+|+
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~i~~r~~~~-l~~~~~~-~~~----~~~~~~~~-~~D~---- 64 (258)
T d1ae1a_ 3 SLKG-TTALVTGGSKGIGYAIVEELAGL------GARVYTCSRNEKE-LDECLEI-WRE----KGLNVEGS-VCDL---- 64 (258)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-HHH----TTCCEEEE-ECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-HHh----cCCCceEE-Eeec----
Confidence 4789 9999999 557999999999999 9999888776433 3332221 110 00000111 2443
Q ss_pred ecchhHHHHHHHHHhcC-CCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCM-KPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~L-k~gaiL~~a~G~ 214 (462)
..++...++++++.... .+-.+|+..+|.
T Consensus 65 s~~~~~~~~~~~~~~~~~g~idilinnag~ 94 (258)
T d1ae1a_ 65 LSRTERDKLMQTVAHVFDGKLNILVNNAGV 94 (258)
T ss_dssp TCHHHHHHHHHHHHHHTTSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEeccccc
Confidence 34455566777777665 234466666665
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=92.24 E-value=0.15 Score=43.22 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=48.5
Q ss_pred cCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhH----HHHHHcCceecCCCcCCHhhhhc
Q 012479 108 FNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 108 l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~----~~A~~~G~~~~d~~~~~~~eav~ 177 (462)
|+| +||++||=| ++-.|++..+... |+++.+..... .... +.+.+.|... ....+++++++
T Consensus 1 l~g-~ki~~vGD~~nnV~~Sli~~~~~~------g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i--~~~~d~~~ai~ 71 (161)
T d1vlva2 1 LKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSV--SFTSNLEEALA 71 (161)
T ss_dssp STT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEE--EEESCHHHHHT
T ss_pred CCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEecchhhhhhhhHHHHHHHHHhhcCCce--EEEecHHHhhh
Confidence 689 999999954 6999999999887 98876654321 1211 2333334321 01568999999
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
++|+|+...-
T Consensus 72 ~aDviyt~~~ 81 (161)
T d1vlva2 72 GADVVYTDVW 81 (161)
T ss_dssp TCSEEEECCC
T ss_pred hhhheeccce
Confidence 9999997553
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=92.21 E-value=0.15 Score=47.47 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=49.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH--HHHcCceecCCCcCC----HhhhhccCCeEEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--ARAAGFTEENGTLGD----IYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~--A~~~G~~~~d~~~~~----~~eav~~ADvViL 184 (462)
|+|.|+| .|.+|.+++..|.+. |++|++..|+.++.... ....|+....+...+ ...++..+|.+++
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~ 77 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 77 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCChHHHHHHHHHHHhC------CCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence 7899999 599999999999999 99988887754332222 222354321111222 3457788999998
Q ss_pred eecchhH
Q 012479 185 LISDAAQ 191 (462)
Q Consensus 185 avpd~a~ 191 (462)
..++...
T Consensus 78 ~~~~~~~ 84 (350)
T d1xgka_ 78 NTTSQAG 84 (350)
T ss_dssp CCCSTTS
T ss_pred ecccccc
Confidence 8876543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.12 E-value=0.19 Score=45.44 Aligned_cols=84 Identities=11% Similarity=0.066 Sum_probs=54.6
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+++.+.. .+ .+|+ .
T Consensus 3 L~g-K~~lITGas~GIG~aia~~l~~~------G~~V~~~~r~~~~l~~~~~~~~~~-----------~~-~~Dv----~ 59 (242)
T d1ulsa_ 3 LKD-KAVLITGAAHGIGRATLELFAKE------GARLVACDIEEGPLREAAEAVGAH-----------PV-VMDV----A 59 (242)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHTTTCE-----------EE-ECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCe-----------EE-EEec----C
Confidence 788 999999965 5999999999999 999988877644433333333322 11 2443 3
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.++.+.++++++...+.+=.+|+..+|+
T Consensus 60 ~~~~v~~~~~~~~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 60 DPASVERGFAEALAHLGRLDGVVHYAGI 87 (242)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHhcCCceEEEECCcc
Confidence 4455566777766554332357777775
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.23 Score=46.34 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=59.6
Q ss_pred cccccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeE
Q 012479 104 LPDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 104 ~~~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
.|.-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+++..-. .. .....+++
T Consensus 6 ~~g~L~g-KvalITGas~GIG~aia~~la~~------Ga~Vvi~~r~~~~l~~~~~el~~~--------~~-~~~~~~~~ 69 (297)
T d1yxma1 6 APGLLQG-QVAIVTGGATGIGKAIVKELLEL------GSNVVIASRKLERLKSAADELQAN--------LP-PTKQARVI 69 (297)
T ss_dssp CTTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHT--------SC-TTCCCCEE
T ss_pred CCCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhh--------hc-cccCceEE
Confidence 3567999 999999966 5999999999999 999988887644433333321100 00 01233444
Q ss_pred EEee---cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 183 LLLI---SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 183 iLav---pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.+.. .++.+.++++++...+.+=.+|+..+|.
T Consensus 70 ~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 70 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEeccCCCHHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 4443 3455566777776655443466666665
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.88 E-value=0.063 Score=45.42 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=28.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~ 149 (462)
+||+|||.|..|.+-|..|++. |+ +|.+..+.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~------G~~~V~v~E~~ 37 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARL------GYSDITIFEKQ 37 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEEESS
T ss_pred CEEEEECChHHHHHHHHHHHHC------CCCeEEEEEec
Confidence 8999999999999999999999 98 58777664
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.67 E-value=0.2 Score=45.43 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=55.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
-|+| |++-|-|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+++.+-.. . .-.+|+
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~---------~-~~~~Dv---- 61 (244)
T d1nffa_ 3 RLTG-KVALVSGGARGMGASHVRAMVAE------GAKVVFGDILDEEGKAMAAELADAA---------R-YVHLDV---- 61 (244)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTGGGE---------E-EEECCT----
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhhCcc---------e-EEEeec----
Confidence 4789 998898975 5999999999999 9999888876544333333322110 0 112342
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++.....+=.+|+..+|+
T Consensus 62 ~~~~~v~~~~~~~~~~~g~idilinnAG~ 90 (244)
T d1nffa_ 62 TQPAQWKAAVDTAVTAFGGLHVLVNNAGI 90 (244)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEECCcc
Confidence 33445567788776655433467777775
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.62 E-value=0.08 Score=49.35 Aligned_cols=37 Identities=30% Similarity=0.312 Sum_probs=29.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
..||||+|||.|.-|.+.|..|++. |.+.+|++..+.
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~----~~~~~v~vfEk~ 38 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAE----KAFDQVTLFERR 38 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTT----TCCSEEEEECSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHh----CCCCCEEEEECC
Confidence 4579999999999999999999876 113588887765
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=91.62 E-value=0.17 Score=46.20 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=55.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
+-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++.+|+.++..+.+.+.+-. ..... -.+|+
T Consensus 2 nrL~g-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l~~~-------~~~~~-~~~Dv--- 63 (268)
T d2bgka1 2 NRLQD-KVAIITGGAGGIGETTAKLFVRY------GAKVVIADIADDHGQKVCNNIGSP-------DVISF-VHCDV--- 63 (268)
T ss_dssp CTTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHCCT-------TTEEE-EECCT---
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhcCC-------CceEE-EEccC---
Confidence 34889 999998965 5999999999999 999988877644433333332110 00011 12443
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++.+.++++++.....+=.+|+..+|+
T Consensus 64 -~~~~~v~~~~~~~~~~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 64 -TKDEDVRNLVDTTIAKHGKLDIMFGNVGV 92 (268)
T ss_dssp -TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred -CCHHHHHHHHHHHHHHcCCcceecccccc
Confidence 44556677788776554333356667775
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.56 E-value=0.22 Score=42.53 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=47.6
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHc----CceecCCCcCCHhhhhcc
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAA----GFTEENGTLGDIYETISG 178 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~----G~~~~d~~~~~~~eav~~ 178 (462)
|+| +||++||=| ++.+|++..|..- |+++.+.... +....+.+++. +... ....+..+++++
T Consensus 2 l~g-l~Ia~VGD~~nv~~Sli~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~ea~~~ 72 (163)
T d1pvva2 2 IKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSF--ELLHDPVKAVKD 72 (163)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEE--EEESCHHHHTTT
T ss_pred cCC-CEEEEECCCcHHHHHHHHHHHHc------CCeEEEecccccCCChHHHHHHHHhhhcccceE--EEecCHHHHhhh
Confidence 789 999999976 6778888888887 8887766432 22333333332 2211 115688999999
Q ss_pred CCeEEEee
Q 012479 179 SDLVLLLI 186 (462)
Q Consensus 179 ADvViLav 186 (462)
+|+|+.-.
T Consensus 73 adviy~~~ 80 (163)
T d1pvva2 73 ADVIYTDV 80 (163)
T ss_dssp CSEEEECC
T ss_pred ccEEeecc
Confidence 99988643
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.37 E-value=0.23 Score=43.34 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHH----HHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A----~~~G~~~~d~~~~~~~eav 176 (462)
-|+| .||++||=| ++..|++..+... |+++.+.... .+...+.+ ...|... ....+.++++
T Consensus 2 ~l~~-lkia~vGD~~nnV~~Sli~~~~~~------G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~eai 72 (185)
T d1dxha2 2 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKL--TLTEDPKEAV 72 (185)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEE--EEESCHHHHT
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHHHc------CCEEEEEccHHHHhhhHHHHHHHHHhhccCCeE--EEEeChhhcc
Confidence 4788 999999944 8999999999888 9988776542 22333333 3344331 1156899999
Q ss_pred ccCCeEEEee
Q 012479 177 SGSDLVLLLI 186 (462)
Q Consensus 177 ~~ADvViLav 186 (462)
+++|+|..-+
T Consensus 73 ~~aDvVyt~~ 82 (185)
T d1dxha2 73 KGVDFVHTDV 82 (185)
T ss_dssp TTCSEEEECC
T ss_pred ccccEEEeeh
Confidence 9999988755
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=91.32 E-value=0.48 Score=42.48 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=53.4
Q ss_pred ccCCCCEEEEEcc-c--chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 107 AFNGINQIGVIGW-G--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 107 ~l~gikkIgIIG~-G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
.||| |++-|.|. | -||.++|+.|.+. |.+|++..|+. +..+.+++ ..+....+.++.
T Consensus 2 ~L~g-K~alITGaag~~GIG~AiA~~la~~------Ga~V~i~~r~~-~~~~~~~~------------l~~~~~~~~~~~ 61 (274)
T d2pd4a1 2 FLKG-KKGLIVGVANNKSIAYGIAQSCFNQ------GATLAFTYLNE-SLEKRVRP------------IAQELNSPYVYE 61 (274)
T ss_dssp TTTT-CEEEEECCCSTTSHHHHHHHHHHTT------TCEEEEEESST-TTHHHHHH------------HHHHTTCCCEEE
T ss_pred cCCC-CEEEEECCCCCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHH------------HHhhCCceeEee
Confidence 4899 99999996 4 3999999999999 99998887763 22333222 111122233333
Q ss_pred Eeec-chhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 184 LLIS-DAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 184 Lavp-d~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.-+. +....++++++...+.+=.+++..+|.
T Consensus 62 ~d~~~~~~~~~~~~~~~~~~g~id~lV~nag~ 93 (274)
T d2pd4a1 62 LDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAF 93 (274)
T ss_dssp CCTTCHHHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred ecccchhhHHHHHHHHHHHcCCCCeEEeeccc
Confidence 3333 344456777766655333345556664
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=91.25 E-value=0.16 Score=43.01 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHHh
Q 012479 110 GINQIGVIG-WGSQGPAQAQNLRDS 133 (462)
Q Consensus 110 gikkIgIIG-~G~mG~AiA~~Lrds 133 (462)
+|++|.|.| .|.+|.++++.|.+.
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~ 26 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEG 26 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC
Confidence 368999999 799999999999998
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=91.24 E-value=0.27 Score=42.31 Aligned_cols=95 Identities=11% Similarity=0.207 Sum_probs=55.8
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEE-EecC----CchhHHHHHH--cCceec-CCCcCCHhhhhccCCe
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRK----GSRSFAEARA--AGFTEE-NGTLGDIYETISGSDL 181 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Viv-g~r~----~~~s~~~A~~--~G~~~~-d~~~~~~~eav~~ADv 181 (462)
|+||+||| .|..|.-+.+-|.+. + .+++.. ..+. ..+....... .+.... -....+..+...+.|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-P----~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 75 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-P----HMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDV 75 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-T----TEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-C----CCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccce
Confidence 68999999 899999999888764 1 344432 2221 1122222111 111100 0001234445678999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
||+|+|+....+....+.. .|..+++.++
T Consensus 76 vf~alp~~~s~~~~~~~~~---~~~~vIDlSa 104 (179)
T d2g17a1 76 VFLATAHEVSHDLAPQFLQ---AGCVVFDLSG 104 (179)
T ss_dssp EEECSCHHHHHHHHHHHHH---TTCEEEECSS
T ss_pred eeccccchhHHHHhhhhhh---cCceeecccc
Confidence 9999999888887776543 5667776665
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.15 E-value=0.12 Score=43.84 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=45.0
Q ss_pred cCCCCEEEEEcccc---hHHHHHHHHHHhhhhhcCCcEEEEEecCC--chhHHHHHHcCceecCCCcCCHhhhhccCCeE
Q 012479 108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 108 l~gikkIgIIG~G~---mG~AiA~~Lrds~~~~g~G~~Vivg~r~~--~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
|+| .||+|||=++ ..+|++..+... |.++++...+. ..........|.... ...++.++++++|+|
T Consensus 1 l~g-l~i~~vGD~~~sRv~~Sl~~~l~~~------g~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~d~~eai~~aDvv 71 (153)
T d1pg5a2 1 IDG-LVFALLGDLKYARTVNSLLRILTRF------RPKLVYLISPQLLRARKEILDELNYPVK--EVENPFEVINEVDVL 71 (153)
T ss_dssp STT-CEEEEEECCSSCHHHHHHHHHGGGS------CCSEEEEECCGGGCCCHHHHTTCCSCEE--EESCGGGTGGGCSEE
T ss_pred CCC-CEEEEECCCCccHHHHHHHHHHHHc------CCeeEEEecccccccchhhcccCCCeEE--EEeCHHHHhhcCCeE
Confidence 578 9999999653 899999998877 87654433321 122223333333210 156899999999998
Q ss_pred EEe
Q 012479 183 LLL 185 (462)
Q Consensus 183 iLa 185 (462)
...
T Consensus 72 y~~ 74 (153)
T d1pg5a2 72 YVT 74 (153)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.16 Score=45.38 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=38.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~ 160 (462)
+.||| |.+-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+++.
T Consensus 1 ~slkG-KvalITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~l 49 (248)
T d2o23a1 1 RSVKG-LVAVITGGASGLGLATAERLVGQ------GASAVLLDLPNSGGEAQAKKL 49 (248)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHHh
Confidence 36899 999999966 5999999999999 999988888766555544443
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=90.91 E-value=0.11 Score=45.67 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=29.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
+||+|||.|.-|.+.|..|++. |++|+|..+.
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~------G~~v~v~Er~ 36 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA------GVDVDVYERS 36 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999888764
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=90.86 E-value=0.14 Score=45.98 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=33.8
Q ss_pred ccCCCCEEEEEcc-cc--hHHHHHHHHHHhhhhhcCCcEEEEEecCCchh
Q 012479 107 AFNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~--mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s 153 (462)
-|+| |++-|.|. |+ ||.++|+.|.+. |.+|++..++..+.
T Consensus 3 ~l~g-K~~lItGaag~~GIG~aiA~~la~~------Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 3 LLDG-KRILVSGIITDSSIAFHIARVAQEQ------GAQLVLTGFDRLRL 45 (268)
T ss_dssp TTTT-CEEEECCCSSTTCHHHHHHHHHHHT------TCEEEEEECSCHHH
T ss_pred CCCC-CEEEEECCCCCCHHHHHHHHHHHHc------CCEEEEEeCChHHH
Confidence 5889 99999996 65 999999999999 99998887765543
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.83 E-value=0.33 Score=40.75 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=69.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||-|-|. |.+|.-+++.+++. |-+++.|..++..-. .-.|+.+ ..+..||++ ++|.=++-+||
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~Y------GT~iVaGVtPgKgG~---~~~giPV----f~tV~eA~~~~~~daSvIfVPp 82 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGGK---THLGLPV----FNTVKEAKEQTGATASVIYVPP 82 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHh------cCCeEEeeccCCCCc---cccCccc----hhhHHHHHHhcCCcEEEEecCH
Confidence 68999997 99999999999999 999988886532111 1146654 568888876 79999999998
Q ss_pred hhHHH-HHHHHHhcCCCCcEEEEeccchHHH
Q 012479 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLGH 218 (462)
Q Consensus 189 ~a~~~-vl~eI~~~Lk~gaiL~~a~G~~i~~ 218 (462)
....+ +++.+...++ .++++.-|+.++.
T Consensus 83 ~~a~dAi~EAi~agI~--liV~ITEgIPv~D 111 (130)
T d1euca1 83 PFAAAAINEAIDAEVP--LVVCITEGIPQQD 111 (130)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCCCCCHHH
T ss_pred HHHHHHHHHHHhCCCC--EEEEecCCCCHHH
Confidence 88865 6666766553 3677888886543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.78 E-value=0.25 Score=41.78 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=59.9
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav------~~AD 180 (462)
+| .+|.|+| .|.+|...++-++.. |.++++..+.. +..+.+++.|.... +....+..+.+ +..|
T Consensus 25 ~g-~~VlI~ga~g~vG~~~iqla~~~------g~~vi~~~~~~-~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 25 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGSD-AKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESSH-HHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCCcccccchhhccc------cccceeeeccc-ccccccccccccccccCCccCHHHHHHHHhCCCCEE
Confidence 46 8999988 599999999999888 98888777654 45788888886321 11122333333 3579
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+|+-++..+. +++....++++..++..
T Consensus 97 ~v~d~~g~~~----~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 97 VVLNSLAGEA----IQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EEEECCCTHH----HHHHHHTEEEEEEEEEC
T ss_pred EEEecccchH----HHHHHHHhcCCCEEEEE
Confidence 9998887543 33344556665555443
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=90.76 E-value=0.11 Score=45.98 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
|||+|||.|.-|.+-|..|.++ |++|.|..+.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~------G~~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA------GHQVTVLEAS 62 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999887654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=90.62 E-value=0.15 Score=46.38 Aligned_cols=87 Identities=18% Similarity=0.156 Sum_probs=54.8
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----CceecCCCcCCHhhhhccCCe
Q 012479 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~eav~~ADv 181 (462)
.|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|+..+..+.+++. |... ..-.+|+
T Consensus 6 ~l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~----------~~~~~Dv 68 (260)
T d1h5qa_ 6 SFVN-KTIIVTGGNRGIGLAFTRAVAAA------GANVAVIYRSAADAVEVTEKVGKEFGVKT----------KAYQCDV 68 (260)
T ss_dssp CCTT-EEEEEETTTSHHHHHHHHHHHHT------TEEEEEEESSCTTHHHHHHHHHHHHTCCE----------EEEECCT
T ss_pred cCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHHhCCce----------EEEEccC
Confidence 4889 9999999764 999999999999 999988888755543333321 1110 0112332
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++.....+=.+|+..+|+
T Consensus 69 ----~~~~~v~~~~~~~~~~~g~iDilVnnAg~ 97 (260)
T d1h5qa_ 69 ----SNTDIVTKTIQQIDADLGPISGLIANAGV 97 (260)
T ss_dssp ----TCHHHHHHHHHHHHHHSCSEEEEEECCCC
T ss_pred ----CCHHHHHHHHHHHHHHhCCCcEecccccc
Confidence 34555566777776655332246666665
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=90.62 E-value=0.51 Score=38.93 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=67.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||-|-|. |.+|.-+++.+++. |-+|+.|..++..-. .-.|+.+ ..+.+|+++ ++|.=++-+||
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~y------GT~vVaGVtPgkgG~---~~~giPV----f~sV~eAv~~~~~~~SvIfVPp 73 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGGT---THLGLPV----FNTVREAVAATGATASVIYVPA 73 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTE---EETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEEEEccCCCCc---ccCCCch----hhHHHHHHHHhCCCeEEEeccH
Confidence 68999997 99999999999999 999988887533111 1246654 567888765 68999999998
Q ss_pred hhHHH-HHHHHHhcCCCCcEEEEeccchHH
Q 012479 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLG 217 (462)
Q Consensus 189 ~a~~~-vl~eI~~~Lk~gaiL~~a~G~~i~ 217 (462)
....+ +++.+...++ .++++.-|+.++
T Consensus 74 ~~a~dA~~EAi~agI~--~iV~ITEgIP~~ 101 (119)
T d2nu7a1 74 PFCKDSILEAIDAGIK--LIITITEGIPTL 101 (119)
T ss_dssp GGHHHHHHHHHHTTCS--EEEECCCCCCHH
T ss_pred HHHHHHHHHHHHCCCC--EEEEecCCCCHH
Confidence 87765 6666766553 367788888654
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=90.61 E-value=0.34 Score=44.30 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=30.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r 148 (462)
..|+| ++|+|=|+|+.|...|+-|.+. |.+|+...+
T Consensus 27 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~------Gakvv~vsD 62 (242)
T d1v9la1 27 GGIEG-KTVAIQGMGNVGRWTAYWLEKM------GAKVIAVSD 62 (242)
T ss_dssp SCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEEC
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEeec
Confidence 46889 9999999999999999999998 887654443
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.23 E-value=0.15 Score=43.26 Aligned_cols=91 Identities=14% Similarity=0.167 Sum_probs=52.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc---EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
-||||||. |..|.-+.+-|.+. .+ ++... .. .++..+........ .......++...+.|++++++|
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H------~fp~~~l~~~-~s-~~s~G~~~~~~~~~-~~~~~~~~~~~~~~d~~f~~~~ 72 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYL-AS-ARSAGKSLKFKDQD-ITIEETTETAFEGVDIALFSAG 72 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CSCEEEEEEE-EC-GGGTTCEEEETTEE-EEEEECCTTTTTTCSEEEECSC
T ss_pred CEEEEECCCcHHHHHHHHHHHcC------CCCceEEEEe-cc-cccccccccccCCc-ccccccchhhhhhhhhhhhccC
Confidence 58999996 99999998777544 32 22222 11 11111100111110 0001234456678999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+....+...+.. ..|..|+|.++.
T Consensus 73 ~~~s~~~~~~~~---~~~~~VIDlSsd 96 (154)
T d2gz1a1 73 SSTSAKYAPYAV---KAGVVVVDNTSY 96 (154)
T ss_dssp HHHHHHHHHHHH---HTTCEEEECSST
T ss_pred ccchhhHHhhhc---cccceehhcChh
Confidence 888777766543 367788887764
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.17 E-value=0.25 Score=44.86 Aligned_cols=88 Identities=15% Similarity=0.055 Sum_probs=54.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
+-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..++.++..+.+++.|-.. ..-.+|+
T Consensus 2 nrL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~~~~~----------~~~~~Dv--- 61 (253)
T d1hxha_ 2 NRLQG-KVALVTGGASGVGLEVVKLLLGE------GAKVAFSDINEAAGQQLAAELGERS----------MFVRHDV--- 61 (253)
T ss_dssp CTTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCTTE----------EEECCCT---
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCCe----------EEEEeec---
Confidence 34889 998888965 5999999999999 9998887765443333333322110 0112332
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++...+.+=.+|+..+|+
T Consensus 62 -~~~~~~~~~~~~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 62 -SSEADWTLVMAAVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp -TCHHHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred -CCHHHHHHHHHHHHHHhCCCCeEEecccc
Confidence 23455566777776555443467777775
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.07 E-value=0.14 Score=47.98 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
|. |||+|||.|.-|.+.|..|.+. |++|.|...+
T Consensus 1 k~-KKI~IIGaG~sGL~aA~~L~k~------G~~V~viEk~ 34 (314)
T d2bi7a1 1 KS-KKILIVGAGFSGAVIGRQLAEK------GHQVHIIDQR 34 (314)
T ss_dssp CC-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHhC------CCCEEEEECC
Confidence 35 9999999999999999999998 9999887665
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.05 E-value=0.29 Score=44.34 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=56.0
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
|+| |++-|.|. +-+|.++|+.|.+. |.+|++..|+.++..+.+++.|-.. . .-.+|+ +
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~~~~~~---------~-~~~~Dv----t 61 (256)
T d1k2wa_ 3 LDG-KTALITGSARGIGRAFAEAYVRE------GARVAIADINLEAARATAAEIGPAA---------C-AIALDV----T 61 (256)
T ss_dssp TTT-EEEEEETCSSHHHHHHHHHHHHT------TEEEEEEESCHHHHHHHHHHHCTTE---------E-EEECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCCce---------E-EEEeeC----C
Confidence 788 99999996 47999999999999 9999888876554444444433211 0 112444 3
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.++...++++++.....+=.+|+..+|+
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAg~ 89 (256)
T d1k2wa_ 62 DQASIDRCVAELLDRWGSIDILVNNAAL 89 (256)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCccEEEeeccc
Confidence 4555667888766554332356777775
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=90.04 E-value=0.11 Score=44.92 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=28.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
|+|+|||.|.-|.+-|..|.+. |++|.+..+.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~------G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR------GTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT------TCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 5799999999999999999999 9999887654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.03 E-value=0.7 Score=41.76 Aligned_cols=91 Identities=16% Similarity=0.047 Sum_probs=55.4
Q ss_pred ccccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 105 PDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
.+.||| |.+-|.|.+ -+|.++|+.|.+. |.+|++..|+..+..+.+++. . +.-...+++.
T Consensus 5 M~~lk~-Kv~lITGas~GIG~aiA~~la~~------G~~Vv~~~r~~~~l~~~~~~l--~----------~~~~~~~~~~ 65 (257)
T d1xg5a_ 5 MERWRD-RLALVTGASGGIGAAVARALVQQ------GLKVVGCARTVGNIEELAAEC--K----------SAGYPGTLIP 65 (257)
T ss_dssp CGGGTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH--H----------HTTCSSEEEE
T ss_pred CCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--H----------hcCCCceEEE
Confidence 356999 999999965 7999999999999 999888776533322222211 0 0001122332
Q ss_pred E---eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 184 L---LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 184 L---avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+ ...++...++++++...+..=.+|+..+|+
T Consensus 66 ~~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnAg~ 99 (257)
T d1xg5a_ 66 YRCDLSNEEDILSMFSAIRSQHSGVDICINNAGL 99 (257)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred EEccCCCHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 2 134555567777766554332356677765
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.93 E-value=0.15 Score=41.36 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=28.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
.||||||.|-.|.-+++..++- |+++++.+..
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l------G~~v~v~d~~ 43 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL------GVEVIAVDRY 43 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 7899999999999999999988 9998876644
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=89.93 E-value=0.35 Score=41.84 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=50.6
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhH----HHHHHcCceecCCCcCCHhhh
Q 012479 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSF----AEARAAGFTEENGTLGDIYET 175 (462)
Q Consensus 106 ~~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~----~~A~~~G~~~~d~~~~~~~ea 175 (462)
+.|+| .||++||=| ++..|++..+..- |+++.+.-.+ ..... +.+...|... ....+.+++
T Consensus 1 k~~~~-l~i~~vGD~~nnv~~Sli~~~~~~------g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a 71 (183)
T d1duvg2 1 KAFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNI--TLTEDVAKG 71 (183)
T ss_dssp CCGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEE--EEESCHHHH
T ss_pred CCcCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEEechHhhhhHHHHHHHHHHHHhcCCce--EEEechhhc
Confidence 46888 999999955 7999999999887 9887766432 12222 3334445431 115689999
Q ss_pred hccCCeEEEeec
Q 012479 176 ISGSDLVLLLIS 187 (462)
Q Consensus 176 v~~ADvViLavp 187 (462)
++++|+|..-+=
T Consensus 72 ~~~aDvvyt~~w 83 (183)
T d1duvg2 72 VEGADFIYTDVW 83 (183)
T ss_dssp HTTCSEEEECCS
T ss_pred cccCCEEEEEeh
Confidence 999999986543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.78 E-value=0.26 Score=44.86 Aligned_cols=90 Identities=18% Similarity=0.150 Sum_probs=53.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++ .+.+.+. +.. ...... .-.+|+
T Consensus 5 ~L~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-l~~~~~~-~~~----~g~~~~-~~~~Dv---- 66 (259)
T d2ae2a_ 5 NLEG-CTALVTGGSRGIGYGIVEELASL------GASVYTCSRNQKE-LNDCLTQ-WRS----KGFKVE-ASVCDL---- 66 (259)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-HHH----TTCEEE-EEECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-HHh----cCCCce-EEEeeC----
Confidence 3789 999999976 5999999999999 9998887775333 3222211 110 000000 112333
Q ss_pred ecchhHHHHHHHHHhcCC-CCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMK-PNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk-~gaiL~~a~G~ 214 (462)
+.++...++++++...+. +=.+|+..+|+
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 67 SSRSERQELMNTVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEEECCce
Confidence 344555667777766554 33467777775
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.75 E-value=0.24 Score=41.63 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=50.4
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcCceecCCCcCCHhhhhccCC
Q 012479 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 108 l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
|+| .||+|||= ++..+|++..+... |.++.+.... .+.....+.+.+... ....+++++++++|
T Consensus 2 l~g-l~i~~vGD~~~srV~~Sli~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~--~~~~d~~~av~~aD 72 (157)
T d1ml4a2 2 IDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKV--VETTTLEDVIGKLD 72 (157)
T ss_dssp SSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCE--EEESCTHHHHTTCS
T ss_pred cCC-CEEEEEcCCccChHHHHHHHHHHhc------CCcEEEEccchhhcchHHHHHHHhhcccc--eeecCHHHhhccCc
Confidence 678 99999997 57899999999877 8887776543 223334455554431 01568899999999
Q ss_pred eEEEeec
Q 012479 181 LVLLLIS 187 (462)
Q Consensus 181 vViLavp 187 (462)
+|....-
T Consensus 73 vvy~~~~ 79 (157)
T d1ml4a2 73 VLYVTRI 79 (157)
T ss_dssp EEEECCC
T ss_pred EEEeecc
Confidence 9887654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.73 E-value=0.25 Score=44.98 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=35.9
Q ss_pred ccccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH
Q 012479 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF 154 (462)
Q Consensus 105 ~~~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~ 154 (462)
+..|+| |++-|.| .+-+|.++|+.|.+. |.+|++.+++.++..
T Consensus 13 ~~sL~g-K~~lITGas~GIG~aia~~la~~------Ga~Vvi~~~~~~~~~ 56 (272)
T d1g0oa_ 13 SASLEG-KVALVTGAGRGIGREMAMELGRR------GCKVIVNYANSTESA 56 (272)
T ss_dssp GGCCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHHH
T ss_pred CcCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCchHHH
Confidence 567999 9999999 568999999999999 999988777655433
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.53 E-value=0.39 Score=43.29 Aligned_cols=86 Identities=21% Similarity=0.127 Sum_probs=53.0
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.++..+.+++.+-.. ..+ .+|+ +
T Consensus 2 l~g-K~alITGas~GIG~a~a~~l~~~------G~~Vv~~~r~~~~l~~~~~~~~~~~---------~~~-~~Dv----~ 60 (243)
T d1q7ba_ 2 FEG-KIALVTGASRGIGRAIAETLAAR------GAKVIGTATSENGAQAISDYLGANG---------KGL-MLNV----T 60 (243)
T ss_dssp CTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGE---------EEE-ECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHhCCCC---------cEE-EEEe----c
Confidence 789 888888855 6999999999999 9999887776444333333322110 001 2332 3
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.++...++++++.....+=.+|+..+|.
T Consensus 61 ~~~~v~~~~~~~~~~~g~iDilVnnAg~ 88 (243)
T d1q7ba_ 61 DPASIESVLEKIRAEFGEVDILVNNAGI 88 (243)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred CHHHhhhhhhhhhcccCCcceehhhhhh
Confidence 3455567888776655332356666664
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=89.49 E-value=0.25 Score=45.06 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=54.0
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe-
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa- 185 (462)
|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.++ .+.+.+. ..+.-.+..++.+.
T Consensus 2 l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~-l~~~~~~-----------~~~~~~~~~~~~~~~ 62 (258)
T d1iy8a_ 2 FTD-RVVLITGGGSGLGRATAVRLAAE------GAKLSLVDVSSEG-LEASKAA-----------VLETAPDAEVLTTVA 62 (258)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-----------HHHHCTTCCEEEEEC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-----------HHhhCCCCeEEEEec
Confidence 788 988888976 5999999999999 9999888776433 2222211 11111122333322
Q ss_pred --ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 --vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++...+.+=.+|+..+|+
T Consensus 63 Dvt~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 63 DVSDEAQVEAYVTATTERFGRIDGFFNNAGI 93 (258)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 34455567777776655332367777775
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.44 E-value=0.24 Score=45.08 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=35.5
Q ss_pred cccccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCch
Q 012479 104 LPDAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (462)
Q Consensus 104 ~~~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~ 152 (462)
-|+.|+| |++-|.|.++ +|.++|+.|.+. |.+|++..|+.++
T Consensus 8 ~~~~L~G-K~alITGassGIG~aiA~~la~~------G~~Vil~~r~~~~ 50 (269)
T d1xu9a_ 8 RPEMLQG-KKVIVTGASKGIGREMAYHLAKM------GAHVVVTARSKET 50 (269)
T ss_dssp CGGGGTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CccccCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 3466999 9999999875 999999999999 9999888876443
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=89.30 E-value=0.62 Score=41.89 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=54.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH-HHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
-|+| |++-|.|.+ -||.++|+.|.+. |.+|++.++...+.. +..++.|... ..-.+|+
T Consensus 2 rL~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~~~~~~~~~~~~~~~g~~~----------~~~~~Dv--- 61 (247)
T d2ew8a1 2 RLKD-KLAVITGGANGIGRAIAERFAVE------GADIAIADLVPAPEAEAAIRNLGRRV----------LTVKCDV--- 61 (247)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCCHHHHHHHHHTTCCE----------EEEECCT---
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCchHHHHHHHHHcCCcE----------EEEEeeC---
Confidence 3789 998899975 5999999999999 999988877644322 2222222110 0113443
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++....+++++.....+=.+|+..+|+
T Consensus 62 -s~~~~v~~~~~~~~~~~G~iDilVnnAG~ 90 (247)
T d2ew8a1 62 -SQPGDVEAFGKQVISTFGRCDILVNNAGI 90 (247)
T ss_dssp -TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred -CCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 34455566777776554332356777775
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.02 E-value=0.14 Score=46.08 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.5
Q ss_pred CC-EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 111 IN-QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 111 ik-kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
|| +|.|||.|.-|.+.|..|++. |++|.|..+.
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~------G~~v~vlE~~ 34 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKA------GIDNVILERQ 34 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHH------TCCEEEECSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 44 699999999999999999999 9998887765
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=88.92 E-value=0.2 Score=45.53 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=53.1
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe-
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL- 185 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa- 185 (462)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|++.+..+...+. +. + -...+++.+.
T Consensus 2 L~g-K~alITGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~~~~~~~~~-~~----------~-~~g~~~~~~~~ 62 (260)
T d1x1ta1 2 LKG-KVAVVTGSTSGIGLGIATALAAQ------GADIVLNGFGDAAEIEKVRAG-LA----------A-QHGVKVLYDGA 62 (260)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEECCSCHHHHHHHHHH-HH----------H-HHTSCEEEECC
T ss_pred CCc-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHHH-HH----------H-hcCCcEEEEEC
Confidence 688 888887866 4999999999999 999988887654433332211 00 0 0012222222
Q ss_pred --ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 --ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 --vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++.+.++++++.....+=.+|+..+|+
T Consensus 63 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGI 93 (260)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeeccc
Confidence 23455566777766554332367777776
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.82 E-value=0.71 Score=38.14 Aligned_cols=91 Identities=16% Similarity=0.287 Sum_probs=66.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||-|-|. |.+|.-+++.+++. |-+++.|..++..-. .-.|+.+ ..+.+||++ ++|.=++-+||
T Consensus 8 trVivQGiTG~~G~~ht~~m~~y------GT~iVaGVtPgkgG~---~~~giPV----f~tV~eAv~~~~~d~SvIfVPp 74 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGGM---EVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEeeeecCCCCc---EEECCch----HhhHHHHHHhcCCeEEEEeeCH
Confidence 68999997 99999999999999 999988887532110 0135554 567888764 68999999998
Q ss_pred hhHHH-HHHHHHhcCCCCcEEEEeccchHH
Q 012479 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLLG 217 (462)
Q Consensus 189 ~a~~~-vl~eI~~~Lk~gaiL~~a~G~~i~ 217 (462)
....+ +++.+...++ .++++.-|+.++
T Consensus 75 ~~a~dAi~EAi~agI~--liv~ITEgVPv~ 102 (121)
T d1oi7a1 75 PAAADAALEAAHAGIP--LIVLITEGIPTL 102 (121)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCSCCCHH
T ss_pred HHHHHHHHHHHhCCCc--EEEEecCCCCHH
Confidence 87765 5555665553 367788888654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.71 E-value=0.59 Score=41.38 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=47.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-h------HHHHHHcCceecCCCcCC---HhhhhccCC
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-S------FAEARAAGFTEENGTLGD---IYETISGSD 180 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-s------~~~A~~~G~~~~d~~~~~---~~eav~~AD 180 (462)
+||.|+| .|.+|..++..|.+. |++|++..|.... . .......++........+ ..++++++|
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 6799999 599999999999999 9998877775321 1 122223444321111222 345778899
Q ss_pred eEEEeecch
Q 012479 181 LVLLLISDA 189 (462)
Q Consensus 181 vViLavpd~ 189 (462)
.++.+.+..
T Consensus 78 ~~~~~~~~~ 86 (312)
T d1qyda_ 78 VVISALAGG 86 (312)
T ss_dssp EEEECCCCS
T ss_pred hhhhhhhhc
Confidence 999887654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=88.36 E-value=0.25 Score=40.24 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=27.1
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCC--cEEEEEec
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLR 148 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G--~~Vivg~r 148 (462)
| |||.|||.|..|-.+|..|++. + .+|++..+
T Consensus 2 g-krivIvGgG~~G~e~A~~l~~~------~~~~~Vtlie~ 35 (186)
T d1fcda1 2 G-RKVVVVGGGTGGATAAKYIKLA------DPSIEVTLIEP 35 (186)
T ss_dssp C-CEEEEECCSHHHHHHHHHHHHH------CTTSEEEEECS
T ss_pred C-CcEEEECccHHHHHHHHHHHHc------CCCCcEEEEEC
Confidence 7 9999999999999999999987 5 46666544
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=88.27 E-value=0.36 Score=43.85 Aligned_cols=87 Identities=21% Similarity=0.233 Sum_probs=52.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++ .+.+.+. +. + ...++..+.
T Consensus 2 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~-l~~~~~~-~~----------~--~g~~~~~~~ 60 (260)
T d1zema1 2 KFNG-KVCLVTGAGGNIGLATALRLAEE------GTAIALLDMNREA-LEKAEAS-VR----------E--KGVEARSYV 60 (260)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH-HHHHHHH-HH----------T--TTSCEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH-HHHHHHH-HH----------h--cCCcEEEEE
Confidence 4889 999999976 4999999999999 9998887765332 3332221 11 0 012232222
Q ss_pred ---ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 ---vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++...+..=.+|+..+|+
T Consensus 61 ~Dv~~~~~v~~~~~~~~~~~g~iDilVnnaG~ 92 (260)
T d1zema1 61 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGY 92 (260)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCeehhhhcc
Confidence 23455567777766554332356666665
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.26 E-value=0.32 Score=44.43 Aligned_cols=88 Identities=14% Similarity=0.135 Sum_probs=53.1
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH---cCceecCCCcCCHhhh-hccCCeE
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYET-ISGSDLV 182 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~ea-v~~ADvV 182 (462)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+++ .|.. ..++ .-.+|+
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~l~~r~~~~l~~~~~~l~~~~~~--------~~~~~~~~~Dv- 66 (272)
T d1xkqa_ 3 FSN-KTVIITGSSNGIGRTTAILFAQE------GANVTITGRSSERLEETRQIILKSGVS--------EKQVNSVVADV- 66 (272)
T ss_dssp TTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHTTTCC--------GGGEEEEECCT-
T ss_pred CCC-CEEEEeCcCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCC--------CCceEEEEccC-
Confidence 789 999999965 6999999999999 99998888764332222221 1111 1111 112332
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++.....+=.+|+..+|.
T Consensus 67 ---s~~~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 67 ---TTEDGQDQIINSTLKQFGKIDVLVNNAGA 95 (272)
T ss_dssp ---TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ---CCHHHHHHHHHHHHHHhCCceEEEeCCcc
Confidence 34455567777766554332356666665
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=88.25 E-value=0.21 Score=42.37 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=46.2
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 108 l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
|+| .||++||= ++..+|++..+..- |.++.+..... ... .+..+.. ..+.+|+++++|+|..
T Consensus 1 F~g-l~i~~vGD~~~srv~~Sl~~~~~~~------g~~~~i~~P~~---~~~-~~~~~~~----~~~~~ea~~~aDviy~ 65 (151)
T d2at2a2 1 FKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSE---WQD-EENTFGT----YVSMDEAVESSDVVML 65 (151)
T ss_pred CCC-CEEEEEcCCCCCHHHHHHHHHHHHc------CCcccccCCch---hhc-cccceeE----EEechhccccCceeee
Confidence 688 99999995 57999999999887 88876654321 111 1223332 4688899999999887
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
..-
T Consensus 66 ~r~ 68 (151)
T d2at2a2 66 LRI 68 (151)
T ss_pred eEE
Confidence 543
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.03 E-value=0.29 Score=44.40 Aligned_cols=88 Identities=18% Similarity=0.115 Sum_probs=53.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+++. . +.. ..+++.+.
T Consensus 2 ~l~g-K~~lITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l--~----------~~~-g~~~~~~~ 61 (251)
T d1vl8a_ 2 DLRG-RVALVTGGSRGLGFGIAQGLAEA------GCSVVVASRNLEEASEAAQKL--T----------EKY-GVETMAFR 61 (251)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH--H----------HHH-CCCEEEEE
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--H----------HHh-CCcEEEEE
Confidence 4789 999999976 5999999999999 999988887644433322221 0 000 11222221
Q ss_pred ---ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 ---vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++...+.+=.+|+..+|+
T Consensus 62 ~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 62 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 23455566777776554332356777775
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.88 E-value=0.27 Score=48.61 Aligned_cols=86 Identities=10% Similarity=-0.021 Sum_probs=53.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC-------------------chhHH---HHHHc--
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARAA-- 160 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~-------------------~~s~~---~A~~~-- 160 (462)
..|++ .||.|||+|-+|..++++|..+ |+ ++.+.+... .+... ..++.
T Consensus 33 ~~l~~-~kVlvvG~GglG~ei~k~L~~~------Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np 105 (426)
T d1yovb1 33 FLLDT-CKVLVIGAGGLGCELLKNLALS------GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVP 105 (426)
T ss_dssp HHHHH-CCEEEECSSTTHHHHHHHHHTT------TCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHST
T ss_pred HHHhc-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCC
Confidence 34678 8999999999999999999988 66 444443210 01111 11111
Q ss_pred Cc--eecCCCc-CCHhhhhccCCeEEEeecchhHHHHHHHH
Q 012479 161 GF--TEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKI 198 (462)
Q Consensus 161 G~--~~~d~~~-~~~~eav~~ADvViLavpd~a~~~vl~eI 198 (462)
.+ ....... ....+.+++.|+||.++-.......+.++
T Consensus 106 ~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~ 146 (426)
T d1yovb1 106 NCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGM 146 (426)
T ss_dssp TCCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred CCceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHH
Confidence 11 1101111 12346789999999999887777777654
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=87.83 E-value=0.86 Score=41.03 Aligned_cols=84 Identities=19% Similarity=0.126 Sum_probs=55.5
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
-|+| |++-|.| .+-||.++|+.|.+. |.+|++..|+.+ ..+.+++.+.. .+ .+|+
T Consensus 2 ~l~G-K~alITGas~GIG~aia~~la~~------G~~V~~~~~~~~-~~~~~~~~~~~-----------~~-~~Dv---- 57 (248)
T d2d1ya1 2 LFAG-KGVLVTGGARGIGRAIAQAFARE------GALVALCDLRPE-GKEVAEAIGGA-----------FF-QVDL---- 57 (248)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSTT-HHHHHHHHTCE-----------EE-ECCT----
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCe-----------EE-EEeC----
Confidence 4789 9999998 457999999999999 999988777643 34444443322 11 2454
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++...+.+=.+|+..+|+
T Consensus 58 ~~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 86 (248)
T d2d1ya1 58 EDERERVRFVEEAAYALGRVDVLVNNAAI 86 (248)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEeCcC
Confidence 34455567777766554332357777775
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.79 E-value=0.6 Score=42.05 Aligned_cols=89 Identities=19% Similarity=0.077 Sum_probs=51.7
Q ss_pred CCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh-hccCCeEEEee
Q 012479 109 NGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (462)
Q Consensus 109 ~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea-v~~ADvViLav 186 (462)
+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+.+..-. .....+ .-.+|+ +
T Consensus 2 ~G-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~l~~~------~~~~~~~~~~~Dv----~ 64 (254)
T d2gdza1 2 NG-KVALVTGAAQGIGRAFAEALLLK------GAKVALVDWNLEAGVQCKAALHEQ------FEPQKTLFIQCDV----A 64 (254)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHTTT------SCGGGEEEEECCT----T
T ss_pred CC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHh------cCCCcEEEEEeec----C
Confidence 67 888888865 5999999999999 999988877644433333322111 011111 112342 3
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.++.+.++++++...+.+=.+|+-.+|+
T Consensus 65 ~~~~v~~~~~~~~~~~G~iDilVnnAg~ 92 (254)
T d2gdza1 65 DQQQLRDTFRKVVDHFGRLDILVNNAGV 92 (254)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCcCeecccccc
Confidence 4455566777766544322356666665
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=87.74 E-value=0.56 Score=43.01 Aligned_cols=65 Identities=17% Similarity=0.201 Sum_probs=45.1
Q ss_pred cccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc
Q 012479 98 RDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 98 ~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~ 177 (462)
.+.|.......+| +||++||+ + .....+++. +.++.|..++. + .|... ....+++++
T Consensus 110 ~d~~~~~~~~~~g-~kV~vIG~--~--P~v~~l~~~------~~~~~VlE~~p-~-------~gd~p----~~~~~~lLp 166 (251)
T d2h1qa1 110 NDPFIMSQNEVKG-KKVGVVGH--F--PHLESLLEP------ICDLSILEWSP-E-------EGDYP----LPASEFILP 166 (251)
T ss_dssp CCHHHHTTTTTTT-SEEEEESC--C--TTHHHHHTT------TSEEEEEESSC-C-------TTCEE----GGGHHHHGG
T ss_pred ccchhhhccccCC-CEEEEEec--c--hhHHHHHhc------CCcEEEEeCCC-C-------CCCCC----chHHHHhhh
Confidence 3456666677789 99999986 4 355667887 77888877753 1 23332 235678899
Q ss_pred cCCeEEEe
Q 012479 178 GSDLVLLL 185 (462)
Q Consensus 178 ~ADvViLa 185 (462)
+||+||+.
T Consensus 167 ~aD~viiT 174 (251)
T d2h1qa1 167 ECDYVYIT 174 (251)
T ss_dssp GCSEEEEE
T ss_pred cCCEEEEE
Confidence 99998865
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=87.66 E-value=0.37 Score=42.91 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEcccc---hHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 107 AFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 107 ~l~gikkIgIIG~G~---mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
-|+| |++-|.|.++ +|.++|+.|.+. |.+|++.++++
T Consensus 2 ~L~g-K~~lITGass~~GIG~aiA~~l~~~------G~~V~i~~~~~ 41 (258)
T d1qsga_ 2 FLSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQND 41 (258)
T ss_dssp TTTT-CEEEECCCCSTTSHHHHHHHHHHHT------TCEEEEEESST
T ss_pred cCCC-CEEEEECCCCchhHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4789 9999999765 889999999999 99998887763
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.62 E-value=1.5 Score=36.47 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=53.3
Q ss_pred EEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhh-hhccCCeEEEeecchh
Q 012479 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISDAA 190 (462)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~e-av~~ADvViLavpd~a 190 (462)
||+|+| .|.||..++..+..+ .+++++.+.+.... ..+ .-.++|+||=-+.|+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-----~~~~l~~~~d~~~~-------------------~~~~~~~~~DvvIDFS~p~~ 56 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-----DDLTLSAELDAGDP-------------------LSLLTDGNTEVVIDFTHPDV 56 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-----TTSEEEEEECTTCC-------------------THHHHTTTCSEEEECCCTTT
T ss_pred CEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCc-------------------hhhhccccCCEEEEcccHHH
Confidence 799999 699999999987765 15677666654221 111 1246899999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccchH
Q 012479 191 QADNYEKIFSCMKPNS-ILGLSHGFLL 216 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~ga-iL~~a~G~~i 216 (462)
..+.++....+ |. +|+=+.||+-
T Consensus 57 ~~~~~~~~~~~---~~~~ViGTTG~~~ 80 (135)
T d1yl7a1 57 VMGNLEFLIDN---GIHAVVGTTGFTA 80 (135)
T ss_dssp HHHHHHHHHHT---TCEEEECCCCCCH
T ss_pred HHHHHHHHHhc---CCCEEEeccccch
Confidence 98888865543 33 4555668753
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=0.28 Score=37.58 Aligned_cols=32 Identities=25% Similarity=0.130 Sum_probs=28.0
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r 148 (462)
||+|+|||.|-.|.=+++.-+.- |+++++.+.
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L------G~~v~vldp 32 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL------GIAVWPVGL 32 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG------TEEEEEECT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc------CCEEEEEcC
Confidence 58999999999999999998887 998877654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.19 E-value=0.92 Score=40.94 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=53.1
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
-|+| |++-|-|. +-||.++|+.|.+. |.+|++..|+.++..+.+++.+-. ..-.+|+
T Consensus 3 rl~G-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~~~~~~~~~~~~-----------~~~~~Dv---- 60 (250)
T d1ydea1 3 RYAG-KVVVVTGGGRGIGAGIVRAFVNS------GARVVICDKDESGGRALEQELPGA-----------VFILCDV---- 60 (250)
T ss_dssp TTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCTTE-----------EEEECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhcCCC-----------eEEEccC----
Confidence 4789 99999996 57999999999999 999988777543322222221110 0112342
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++.....+=.+|+..+|+
T Consensus 61 s~~~~v~~~~~~~~~~~g~iDilVnnAG~ 89 (250)
T d1ydea1 61 TQEDDVKTLVSETIRRFGRLDCVVNNAGH 89 (250)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEecccc
Confidence 33455566777766554332356666664
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.10 E-value=0.25 Score=40.88 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=27.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~ 149 (462)
.+|+|||.|.-|.+-|..|.+. |+ +|.|..+.
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~------G~~~V~vlE~~ 33 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEA------GITDLLILEAT 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHT------TCCCEEEECSS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------CCCcEEEEECC
Confidence 4799999999999999999999 97 68877654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=87.06 E-value=0.53 Score=43.04 Aligned_cols=86 Identities=15% Similarity=0.048 Sum_probs=51.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
|+| |++-|-|. +-+|.++|+.|.+. |.+|++..|+.++..+...+.|-.. ..-.+|+ +
T Consensus 3 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~l~~~~~~~~~~~----------~~~~~Dv----~ 61 (276)
T d1bdba_ 3 LKG-EAVLITGGASGLGRALVDRFVAE------GAKVAVLDKSAERLAELETDHGDNV----------LGIVGDV----R 61 (276)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHGGGE----------EEEECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCCe----------eEEeccc----c
Confidence 789 99999995 58999999999999 9999888776443333333222110 0001221 2
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.++...++++++.....+=.+|+..+|+
T Consensus 62 ~~~~~~~~~~~~~~~~g~idilvnnAG~ 89 (276)
T d1bdba_ 62 SLEDQKQAASRCVARFGKIDTLIPNAGI 89 (276)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEECCCCC
T ss_pred cHHHHHHHHHHHHHHhCCcccccccccc
Confidence 2344456667665554333356666665
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=86.95 E-value=0.96 Score=39.40 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=47.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh--H------HHHHHcCceecCCCcCC---HhhhhccC
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--F------AEARAAGFTEENGTLGD---IYETISGS 179 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s--~------~~A~~~G~~~~d~~~~~---~~eav~~A 179 (462)
|||.|+|. |.+|.+++..|.++ |++|++..|..... . ......++........+ ..++++.+
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~------G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 77 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc
Confidence 78999995 99999999999999 99988777653321 1 11122344321111222 34567889
Q ss_pred CeEEEeecchhH
Q 012479 180 DLVLLLISDAAQ 191 (462)
Q Consensus 180 DvViLavpd~a~ 191 (462)
|.|+.+......
T Consensus 78 ~~vi~~~~~~~~ 89 (307)
T d1qyca_ 78 DVVISTVGSLQI 89 (307)
T ss_dssp SEEEECCCGGGS
T ss_pred eeeeeccccccc
Confidence 988888765443
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=86.73 E-value=0.4 Score=43.75 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=34.4
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch
Q 012479 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (462)
Q Consensus 106 ~~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~ 152 (462)
..|+| |++-|.| .|-+|.++|+.|.+. |.+|++.+|+..+
T Consensus 21 ~~l~g-K~alITGas~GIG~aiA~~la~~------Ga~Vii~~r~~~~ 61 (294)
T d1w6ua_ 21 NSFQG-KVAFITGGGTGLGKGMTTLLSSL------GAQCVIASRKMDV 61 (294)
T ss_dssp TTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHH
Confidence 58999 9999988 678999999999999 9999888876544
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=86.72 E-value=0.41 Score=37.88 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=30.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
...+ ++|+|||.|.+|--+|..|+.. |.+|.+..+.
T Consensus 19 ~~~~-~~vvVvGgG~ig~E~A~~l~~~------g~~vt~i~~~ 54 (121)
T d1mo9a2 19 YEPG-STVVVVGGSKTAVEYGCFFNAT------GRRTVMLVRT 54 (121)
T ss_dssp SCCC-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred hCCC-CEEEEECCCHHHHHHHHHHHhc------chhheEeecc
Confidence 3457 9999999999999999999988 8888777654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.70 E-value=0.41 Score=43.77 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=52.8
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH---cCceecCCCcCCHhhh-hccCCeE
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYET-ISGSDLV 182 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~ea-v~~ADvV 182 (462)
|+| |++-|-|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+++ .|.. ...+ .-.+|+
T Consensus 2 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~i~~~~~~--------~~~~~~~~~Dv- 65 (274)
T d1xhla_ 2 FSG-KSVIITGSSNGIGRSAAVIFAKE------GAQVTITGRNEDRLEETKQQILKAGVP--------AEKINAVVADV- 65 (274)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCC--------GGGEEEEECCT-
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCC--------CcceEEEEeeC-
Confidence 789 999999965 5999999999999 99998887754332222221 1211 0000 112332
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++...+.+=.+|+..+|.
T Consensus 66 ---~~~~~v~~~~~~~~~~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 66 ---TEASGQDDIINTTLAKFGKIDILVNNAGA 94 (274)
T ss_dssp ---TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred ---CCHHHHHHHHHHHHHHcCCceEEEeeccc
Confidence 34455567777766554332356666665
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=86.69 E-value=0.29 Score=43.32 Aligned_cols=31 Identities=26% Similarity=0.095 Sum_probs=28.1
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
|.|||.|.+|.+.|..|.+. |.+|+|..+..
T Consensus 7 vvIIGaGi~Gls~A~~La~~------G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE------NKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCcEEEEeCCC
Confidence 99999999999999999999 99998877643
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.60 E-value=0.33 Score=41.81 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=28.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r 148 (462)
+||+|||.|.-|.+-|..|.+. |++|.|...
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~------G~~V~VlEa 36 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF------GMDVTLLEA 36 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT------TCEEEEECS
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeC
Confidence 6899999999999999999999 999888754
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.54 E-value=1.4 Score=39.50 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=55.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
+.|.| |.+-|-|.+. +|.++|+.|.+. |.+|++..|+.++..+.+.+. . + ...++..+
T Consensus 3 ~~l~G-kv~lITGas~GIG~~ia~~la~~------G~~V~l~~r~~~~l~~~~~~~--~----------~--~~~~~~~~ 61 (244)
T d1yb1a_ 3 KSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINKHGLEETAAKC--K----------G--LGAKVHTF 61 (244)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH--H----------H--TTCCEEEE
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHH--H----------h--cCCcEEEE
Confidence 56889 9999999876 999999999999 999988887644332332221 1 1 01122222
Q ss_pred e--ec-chhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 L--IS-DAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 a--vp-d~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
. +. ++.+.++++++...+.+=.+|+..+|+
T Consensus 62 ~~Dvs~~~~v~~~~~~i~~~~g~idilinnag~ 94 (244)
T d1yb1a_ 62 VVDCSNREDIYSSAKKVKAEIGDVSILVNNAGV 94 (244)
T ss_dssp ECCTTCHHHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCceeEeeccc
Confidence 2 22 334456777777665444467777776
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.41 E-value=0.072 Score=46.07 Aligned_cols=22 Identities=27% Similarity=0.358 Sum_probs=21.1
Q ss_pred CEEEEEcccchHHHHHHHHHHh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds 133 (462)
|||+|||.|.+|.+.|..|.++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~ 22 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER 22 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC
Confidence 6899999999999999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=86.13 E-value=0.48 Score=38.28 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=29.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~ 62 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTA------GVHVSLVETQ 62 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CeEEEECcchhHHHHHHHhhcc------cceEEEEeec
Confidence 8999999999999999999999 9988877654
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=86.11 E-value=0.48 Score=38.19 Aligned_cols=34 Identities=26% Similarity=0.161 Sum_probs=29.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++ ++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 29 ~~-k~vvViGgG~iG~E~A~~l~~~------g~~Vtlie~~ 62 (123)
T d1nhpa2 29 EV-NNVVVIGSGYIGIEAAEAFAKA------GKKVTVIDIL 62 (123)
T ss_dssp TC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CC-CEEEEECChHHHHHHHHHhhcc------ceEEEEEEec
Confidence 35 8999999999999999999999 9988876554
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.04 E-value=0.5 Score=42.44 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=34.8
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~ 158 (462)
|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++..+.++
T Consensus 3 l~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~ 47 (242)
T d1cyda_ 3 FSG-LRALVTGAGKGIGRDTVKALHAS------GAKVVAVTRTNSDLVSLAK 47 (242)
T ss_dssp CTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHH
Confidence 789 999999965 5999999999999 9999888776544333333
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=85.64 E-value=0.62 Score=42.36 Aligned_cols=88 Identities=11% Similarity=0.105 Sum_probs=54.4
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH----HcCceecCCCcCCHhhhhccCC
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~~eav~~AD 180 (462)
+.|+| |++-|.|. +-+|.++|+.|.+. |.+|++..|+.++..+... +.|... . .-.+|
T Consensus 3 ~dL~g-K~alITGas~GIG~aia~~la~~------G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~---------~-~~~~D 65 (261)
T d1geea_ 3 KDLEG-KVVVITGSSTGLGKSMAIRFATE------KAKVVVNYRSKEDEANSVLEEIKKVGGEA---------I-AVKGD 65 (261)
T ss_dssp GGGTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCHHHHHHHHHHHHHTTCEE---------E-EEECC
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHHHHHhcCCcE---------E-EEEcc
Confidence 35899 98888885 57999999999999 9999888876543222221 122110 0 11233
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+ +.++...++++++...+.+=.+|+..+|+
T Consensus 66 v----t~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 95 (261)
T d1geea_ 66 V----TVESDVINLVQSAIKEFGKLDVMINNAGL 95 (261)
T ss_dssp T----TSHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred C----CCHHHHHHHHHHHHHHhCCCCEeecccee
Confidence 2 34455566777766554332357777775
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.62 E-value=0.5 Score=37.44 Aligned_cols=32 Identities=19% Similarity=0.112 Sum_probs=29.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++|.|||.|.+|--+|..|.+. |.+|.+..+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~------G~~Vtlve~~ 54 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF------GTKVTILEGA 54 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CeEEEECCCccceeeeeeeccc------ccEEEEEEec
Confidence 7899999999999999999998 9998887664
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=85.58 E-value=0.45 Score=37.89 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=29.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++|.|||.|..|--+|..|++. |.+|.+..+.
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~------G~~Vtlve~~ 53 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL------GAKTHLFEMF 53 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECCChhhHHHHHHhhcc------ccEEEEEeec
Confidence 7899999999999999999998 9998887664
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=85.52 E-value=0.66 Score=41.48 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=31.7
Q ss_pred cccCCCCEEEEEcccc---hHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 106 DAFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~---mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
..|+| |++-|.|.+. +|.++|+.|.+. |.+|++..|.
T Consensus 4 ~~L~g-K~alITGas~~~GIG~aiA~~la~~------Ga~V~i~~~~ 43 (256)
T d1ulua_ 4 VDLSG-KKALVMGVTNQRSLGFAIAAKLKEA------GAEVALSYQA 43 (256)
T ss_dssp ECCTT-CEEEEESCCCSSSHHHHHHHHHHHT------TCEEEEEESS
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 45899 9999999753 999999999999 9998877765
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=85.37 E-value=0.51 Score=42.54 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=35.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~ 156 (462)
+-|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..+++.+..+.
T Consensus 2 ~~L~G-K~alITGas~GIG~aia~~la~~------G~~Vvi~~~~~~~~~~~ 46 (259)
T d1ja9a_ 2 KPLAG-KVALTTGAGRGIGRGIAIELGRR------GASVVVNYGSSSKAAEE 46 (259)
T ss_dssp CTTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEcCCChHHHHH
Confidence 45889 999999866 4999999999999 99998877765554433
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.32 E-value=1 Score=40.86 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=27.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKV 145 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Viv 145 (462)
+.|+| ++|+|-|+|+.|..+|+.|. +. |..|+.
T Consensus 28 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~~------G~kvv~ 61 (239)
T d1gtma1 28 DTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVA 61 (239)
T ss_dssp SCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEE
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHhc------Ccceee
Confidence 56899 99999999999999999885 45 665543
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=85.23 E-value=0.66 Score=42.70 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG 146 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg 146 (462)
..|+| +||+|=|+|+.|...|+.|.+. |.+|+..
T Consensus 32 ~~l~g-~~v~IQGfGnVG~~~a~~L~e~------Gakvvav 65 (255)
T d1bgva1 32 DTLVG-KTVALAGFGNVAWGAAKKLAEL------GAKAVTL 65 (255)
T ss_dssp CCSTT-CEEEECCSSHHHHHHHHHHHHH------TCEEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEE
Confidence 46889 9999999999999999999998 8876543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=85.13 E-value=0.69 Score=39.97 Aligned_cols=95 Identities=19% Similarity=0.219 Sum_probs=53.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEe-c-CCchhHHHHHHcCceecCC-CcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-R-KGSRSFAEARAAGFTEENG-TLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~-r-~~~~s~~~A~~~G~~~~d~-~~~~~~eav~~ADvViLavp 187 (462)
.|||||| .|..|.-+.+-|.+. . .+++.... + ...+........-....+. .....++..+++|+|++++|
T Consensus 6 ikVaIlGATGyvG~elirLL~~H-P----~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp 80 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANH-P----QFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLP 80 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-S----SEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCS
T ss_pred cEEEEECcccHHHHHHHHHHHhC-C----CceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccc
Confidence 5799999 688888888777653 1 33543322 2 2223232221111110000 01223456789999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
...-.++...+ .+.+.++.+.+++
T Consensus 81 ~~~s~~~~~~l---~~~~~~v~~~~~~ 104 (183)
T d2cvoa1 81 HGTTQEIIKGL---PQELKIVDLSADF 104 (183)
T ss_dssp SSHHHHHHHTS---CSSCEEEECSSTT
T ss_pred cchHHHHHHHH---HhcCcccccchhh
Confidence 98777666433 2345556666666
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.13 E-value=0.55 Score=39.85 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=44.6
Q ss_pred ccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhH----HHHHHcCceecCCCcCCHhhhhc
Q 012479 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 107 ~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~----~~A~~~G~~~~d~~~~~~~eav~ 177 (462)
.|+| +||++||-|+ +-+|++..+..- |+++.+..... .... +.+.+.|.... ...++.++++
T Consensus 1 sl~g-l~I~~vGD~~nV~~Sli~~~~~~------g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~--~~~d~~~~~~ 71 (170)
T d1otha2 1 SLKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLL--LTNDPLEAAH 71 (170)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEE--EESCHHHHHT
T ss_pred CCCC-CEEEEEcCchhHHHHHHHHHHHc------CCEEEEEeccccCCchHHHHHHHHHHhccCCEEE--EEcCHHHHHh
Confidence 3789 9999999874 445555555444 77776654431 1112 22333443210 1568999999
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
++|+|+..+-
T Consensus 72 ~advi~~~~~ 81 (170)
T d1otha2 72 GGNVLITDTW 81 (170)
T ss_dssp TCSEEEECCS
T ss_pred hhhheeeece
Confidence 9999998764
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=84.89 E-value=1.2 Score=40.32 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=28.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGL 147 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~ 147 (462)
..++| ++|+|=|+|+.|...|+.|. +. |..++...
T Consensus 27 ~~l~g-~~vaIqG~GnVG~~~a~~L~~e~------Ga~vv~vs 62 (234)
T d1b26a1 27 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAVS 62 (234)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHHH------CCEEEEEE
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHhc------CCceEEee
Confidence 45789 99999999999999999994 56 77655433
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=84.84 E-value=0.28 Score=43.81 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=30.9
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
||| |++-|.|.+ -||.++|+.|.+. |.+|++..|+
T Consensus 2 Lkg-K~~lVTGas~GIG~aia~~l~~~------Ga~V~~~~r~ 37 (234)
T d1o5ia_ 2 IRD-KGVLVLAASRGIGRAVADVLSQE------GAEVTICARN 37 (234)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECC
Confidence 789 999999975 5999999999999 9998887765
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=84.55 E-value=0.49 Score=37.94 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=29.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++|.|||.|.+|--+|..|... |.+|.+..+.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 54 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRL------GIDSYIFARG 54 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhc------cccceeeehh
Confidence 8999999999999999999988 9888887664
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=84.52 E-value=0.77 Score=41.31 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=52.1
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.++..+.+++.+. ..... .-.+|+ +
T Consensus 4 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~~~~-------~~~~~-~~~~Dv----~ 64 (251)
T d1zk4a1 4 LDG-KVAIITGGTLGIGLAIATKFVEE------GAKVMITGRHSDVGEKAAKSVGT-------PDQIQ-FFQHDS----S 64 (251)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHCC-------TTTEE-EEECCT----T
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhCC-------CCcEE-EEEccC----C
Confidence 889 999998955 5999999999999 99998887764433222322210 00000 011222 2
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.++...++++++...+.+=.+|+..+|+
T Consensus 65 ~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 65 DEDGWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCceEEEecccc
Confidence 3445566777766554332356666665
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.38 E-value=0.67 Score=41.74 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=48.7
Q ss_pred CEEEEE-ccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVI-GWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgII-G~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
|||++| |.+ -+|.++|+.|.+. |.+|++..|+.++..+.+++ .|... ..-.+|+ +
T Consensus 1 KKValITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~i~~~g~~~----------~~~~~Dv----~ 60 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD------GFAVAIADYNDATAKAVASEINQAGGHA----------VAVKVDV----S 60 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCCE----------EEEECCT----T
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCcE----------EEEEeeC----C
Confidence 688766 654 5999999999999 99998887764332222211 11110 0112333 2
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.++...++++++...+.+=.+|+..+|+
T Consensus 61 ~~~~v~~~~~~~~~~~g~iDilVnnAG~ 88 (255)
T d1gega_ 61 DRDQVFAAVEQARKTLGGFDVIVNNAGV 88 (255)
T ss_dssp SHHHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCccEEEecccc
Confidence 3445566777776655332357777776
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.18 E-value=0.68 Score=41.54 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=32.9
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCch
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~ 152 (462)
.|+| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+.++
T Consensus 4 ~L~G-K~~lITGas~GIG~aia~~la~~------G~~V~~~~r~~~~ 43 (244)
T d1pr9a_ 4 FLAG-RRVLVTGAGKGIGRGTVQALHAT------GARVVAVSRTQAD 43 (244)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHH
Confidence 4899 999999965 6999999999999 9998887776444
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=84.09 E-value=0.66 Score=42.90 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=45.9
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH----H--cCc---eecCC-CcCCHhhhhc
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----A--AGF---TEENG-TLGDIYETIS 177 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~----~--~G~---~~~d~-~~~~~~eav~ 177 (462)
+| |+|.|.| .|.+|..+++.|.+. |++|+...|+.++...... . ... ...|- ...+..+++.
T Consensus 10 ~g-k~VlVTG~sGfIGs~l~~~Ll~~------G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 82 (342)
T d1y1pa1 10 EG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK 82 (342)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT
T ss_pred Cc-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc
Confidence 37 9999999 789999999999999 9998776765332211110 0 010 10010 0123557889
Q ss_pred cCCeEEEeecc
Q 012479 178 GSDLVLLLISD 188 (462)
Q Consensus 178 ~ADvViLavpd 188 (462)
++|.|+.+.-.
T Consensus 83 ~~~~v~~~a~~ 93 (342)
T d1y1pa1 83 GAAGVAHIASV 93 (342)
T ss_dssp TCSEEEECCCC
T ss_pred cchhhhhhccc
Confidence 99998865543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.04 E-value=0.52 Score=42.70 Aligned_cols=87 Identities=15% Similarity=0.072 Sum_probs=52.2
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
-|+| |++-|-|.+ -+|.++|+.|.+. |.+|++..|+.++..+.+++ +. +. ..+++.+.
T Consensus 8 ~L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~~~~~~~~--l~----------~~--g~~~~~~~ 66 (255)
T d1fmca_ 8 RLDG-KCAIITGAGAGIGKEIAITFATA------GASVVVSDINADAANHVVDE--IQ----------QL--GGQAFACR 66 (255)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHTT------TCEEEEEESCHHHHHHHHHH--HH----------HT--TCCEEEEE
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH--HH----------Hc--CCcEEEEE
Confidence 3789 988888865 6999999999998 99988887653332222211 11 10 11222222
Q ss_pred ---ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 ---vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++...++++++...+.+=.+|+..+|+
T Consensus 67 ~Dvs~~~~~~~~~~~~~~~~g~iDilvnnAG~ 98 (255)
T d1fmca_ 67 CDITSEQELSALADFAISKLGKVDILVNNAGG 98 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEeeeCCcC
Confidence 23445566777766555333367777775
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=83.85 E-value=1.1 Score=37.34 Aligned_cols=73 Identities=14% Similarity=0.007 Sum_probs=45.3
Q ss_pred CCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhh------ccCC
Q 012479 109 NGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (462)
Q Consensus 109 ~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav------~~AD 180 (462)
.| ++|.|+|.|. .|....+-.+.. |.+|++..++ ++..+.+++.|.... |....+..+.+ ...|
T Consensus 28 ~g-~~Vlv~ga~g~vG~~~iqlak~~------Ga~Vi~~~~s-~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d 99 (179)
T d1qora2 28 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 99 (179)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEccccccchHHHHHHHHh------CCeEeecccc-hHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeE
Confidence 46 8999996555 888877777777 8888776665 444677888885310 11112333322 2347
Q ss_pred eEEEeecch
Q 012479 181 LVLLLISDA 189 (462)
Q Consensus 181 vViLavpd~ 189 (462)
+|+-++..+
T Consensus 100 ~v~d~~g~~ 108 (179)
T d1qora2 100 VVYDSVGRD 108 (179)
T ss_dssp EEEECSCGG
T ss_pred EEEeCccHH
Confidence 777776654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=83.54 E-value=0.65 Score=37.92 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=29.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~------g~~Vtvie~~ 67 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKA------NMHVTLLDTA 67 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhh------Ccceeeeeec
Confidence 8999999999999999999999 9988877654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.41 E-value=0.63 Score=37.49 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=29.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++|.|||.|.+|--+|..|+.. |.+|.+..+.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~------G~~Vtlv~~~ 54 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSAL------GSKTSLMIRH 54 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEEcCCccHHHHHHHHhcC------CcEEEEEeec
Confidence 7899999999999999999998 9998887764
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.29 E-value=0.77 Score=40.25 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=32.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
..-.+ ++|.|||.|.-|.+-|..|++. |++|.+..+.
T Consensus 45 ~~~~~-k~VvIIGaGpAGl~aA~~l~~~------G~~v~l~E~~ 81 (233)
T d1djqa3 45 QTKNK-DSVLIVGAGPSGSEAARVLMES------GYTVHLTDTA 81 (233)
T ss_dssp CCSSC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred cccCC-ceEEEEcccHHHHHHHHHHHHh------ccceeeEeec
Confidence 44456 9999999999999999999999 9998887654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.14 E-value=0.6 Score=40.44 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=28.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
+||+|||.|.-|.+-|..|++. +.|++|.+..+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~----~~~~~V~v~e~~ 35 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKH----HSRAHVDIYEKQ 35 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----CSSCEEEEECSS
T ss_pred CeEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 6999999999999999999876 236688877654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=83.02 E-value=1.2 Score=36.53 Aligned_cols=94 Identities=11% Similarity=0.009 Sum_probs=57.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC----cee---------------cC
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTE---------------EN 166 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G----~~~---------------~d 166 (462)
.--+| .+|-.||||.-- .+..|.+. |++| +|.+.++...+.|++.- ... ..
T Consensus 17 ~~~~~-~rvLd~GCG~G~--~a~~la~~------G~~V-~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T d1pjza_ 17 NVVPG-ARVLVPLCGKSQ--DMSWLSGQ------GYHV-VGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 86 (201)
T ss_dssp CCCTT-CEEEETTTCCSH--HHHHHHHH------CCEE-EEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred CCCCC-CEEEEecCcCCH--HHHHHHHc------CCce-EeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence 34467 899999999854 55566777 8886 57777777777777631 100 00
Q ss_pred CCcCCH-hhhhccCCeEEE-----eecchhHHHHHHHHHhcCCCCcEEE
Q 012479 167 GTLGDI-YETISGSDLVLL-----LISDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 167 ~~~~~~-~eav~~ADvViL-----avpd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
+...+. .+.....|+|+. ++++.....+++.+...||||-.+.
T Consensus 87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 135 (201)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEE
Confidence 001111 112234466654 3455556678889999999987543
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=82.85 E-value=1.1 Score=37.51 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=45.8
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCc-EEEEEecC----CchhHHHHHHcCceecCCCcCCHhhhhccC
Q 012479 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (462)
Q Consensus 108 l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~eav~~A 179 (462)
|+| .||++||= ++...|++..+... |. .+++.-.. +....+.++..|... ....++.++++++
T Consensus 2 l~g-l~i~~vGD~~nsrv~~Sli~~l~~~------~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~--~~~~d~~~a~~~a 72 (160)
T d1ekxa2 2 LDN-LHVAMVGDLKYGRTVHSLTQALAKF------DGNRFYFIAPDALAMPQYILDMLDEKGIAW--SLHSSIEEVMAEV 72 (160)
T ss_dssp SSS-CEEEEESCTTTCHHHHHHHHHHTTS------SSCEEEEECCGGGCCCHHHHHHHHHTTCCE--EECSCSTTTGGGC
T ss_pred CCC-CEEEEEcCCCccHHHHHHHHHHHHc------CCCeEEeeccchhhhhHHHHHHHhhhcccc--ccccCHHHHhCcC
Confidence 678 99999996 44899998888766 54 33443221 223335556666532 1156888999999
Q ss_pred CeEEEe
Q 012479 180 DLVLLL 185 (462)
Q Consensus 180 DvViLa 185 (462)
|+|...
T Consensus 73 Dvvy~~ 78 (160)
T d1ekxa2 73 DILYMT 78 (160)
T ss_dssp SEEEEC
T ss_pred ceEEee
Confidence 998854
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.82 E-value=1.2 Score=44.93 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=29.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVG 146 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg 146 (462)
...|+. .+|.|||+|..|.-+++||..+ |+ .+.+.
T Consensus 20 Q~~L~~-s~VlvvG~gglG~Ei~knLvl~------GVg~itiv 55 (529)
T d1yova1 20 QEALES-AHVCLINATATGTEILKNLVLP------GIGSFTII 55 (529)
T ss_dssp HHHHHH-CEEEECCCSHHHHHHHHHHHTT------TCSEEEEE
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHh------cCCEEEEE
Confidence 366777 9999999999999999999988 76 45554
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.81 E-value=0.66 Score=40.21 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=28.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~ 149 (462)
.+|.|||.|.-|.+.|..|++. |+ +|.|..+.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~------Gi~~V~V~Er~ 34 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA------GIGKVTLLESS 34 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCeEEEEeCC
Confidence 5899999999999999999999 96 77776664
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=82.66 E-value=0.78 Score=36.63 Aligned_cols=32 Identities=25% Similarity=0.189 Sum_probs=29.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~------G~~Vtiv~~~ 54 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARL------GAEVTVLEAM 54 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CeEEEECCChHHHHHHHHHHHc------CCceEEEEee
Confidence 7899999999999999999998 9988887664
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.58 E-value=0.71 Score=37.10 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=28.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
+++.|||.|.+|--+|..|.+. |.+|.+..+.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~l------G~~Vtii~~~ 55 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRL------GSKVTVVEFQ 55 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CeEEEECCCchHHHHHHHHHhh------CcceeEEEec
Confidence 7899999999999999999998 9998877654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.08 E-value=0.68 Score=41.98 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=32.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCch
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~ 152 (462)
.||| |++-|.|.+ -+|.++|+.|.+. |.+|++..|+..+
T Consensus 5 ~Lkg-K~alVTGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~ 44 (259)
T d1xq1a_ 5 SLKA-KTVLVTGGTKGIGHAIVEEFAGF------GAVIHTCARNEYE 44 (259)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 4789 999999976 4999999999999 9998887775433
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=81.94 E-value=0.89 Score=41.03 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=31.7
Q ss_pred cCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCch
Q 012479 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (462)
Q Consensus 108 l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~ 152 (462)
|+| |+|-|.|... +|.++|+.|.+. |.+|++..|+.++
T Consensus 3 l~g-K~vlITGgs~GIG~~~A~~la~~------G~~vii~~r~~~~ 41 (254)
T d1sbya1 3 LTN-KNVIFVAALGGIGLDTSRELVKR------NLKNFVILDRVEN 41 (254)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------CCSEEEEEESSCC
T ss_pred CCC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEEECCccc
Confidence 789 9999999774 999999999999 9877776666444
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=81.64 E-value=0.74 Score=41.54 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=33.0
Q ss_pred ccccCCCCEEEEEcccc---hHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 105 PDAFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~---mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
|-.|+| |++-|.|.+. ||.++|+.|.+. |.+|++..+.
T Consensus 3 ~~~L~g-K~alVTGass~~GIG~aiA~~la~~------Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 3 PIDLRG-KRAFIAGIADDNGYGWAVAKSLAAA------GAEILVGTWV 43 (297)
T ss_dssp CCCCTT-CEEEEECCSSSSSHHHHHHHHHHHT------TCEEEEEEEH
T ss_pred CcCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 346899 9999999864 999999999999 9999888765
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=81.47 E-value=0.42 Score=42.77 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=29.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
.+.|++ .+|.|||+|-.|..++.+|... |+ ++.+.+
T Consensus 25 Q~kL~~-~~VliiG~GglGs~va~~La~~------Gvg~i~lvD 61 (247)
T d1jw9b_ 25 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLD 61 (247)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEC
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEEC
Confidence 356888 9999999999999999999998 87 444443
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=81.23 E-value=0.84 Score=36.46 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=28.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 64 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA------GYHVKLIHRG 64 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCcHHHHHHHHHhhcc------cceEEEEecc
Confidence 8999999999999999999998 9988776654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=81.04 E-value=0.88 Score=35.88 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=28.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
+++.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~------g~~Vtlve~~ 53 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKL------GAQVSVVEAR 53 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHhhc------ccceEEEeee
Confidence 7899999999999999999998 9888776553
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=81.02 E-value=1.1 Score=40.11 Aligned_cols=90 Identities=19% Similarity=0.091 Sum_probs=50.5
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.|+| |.+-|.|.+ -+|.++|+.|.+. |.+|++..|+.++ .+...+. +.. ... +-..-.+|+
T Consensus 7 ~len-KvalITGas~GIG~a~a~~la~~------Ga~V~~~~r~~~~-l~~~~~~-l~~----~g~-~~~~~~~Dv---- 68 (251)
T d2c07a1 7 CGEN-KVALVTGAGRGIGREIAKMLAKS------VSHVICISRTQKS-CDSVVDE-IKS----FGY-ESSGYAGDV---- 68 (251)
T ss_dssp CCSS-CEEEEESTTSHHHHHHHHHHTTT------SSEEEEEESSHHH-HHHHHHH-HHT----TTC-CEEEEECCT----
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHH-HHHHHHH-HHh----cCC-cEEEEEccC----
Confidence 3567 777777864 6999999999988 9998887775333 3222211 110 000 000112232
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++.+.++++++.....+=.+|+..+|.
T Consensus 69 t~~~~v~~~~~~~~~~~g~iDilvnnag~ 97 (251)
T d2c07a1 69 SKKEEISEVINKILTEHKNVDILVNNAGI 97 (251)
T ss_dssp TCHHHHHHHHHHHHHHCSCCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCceeeeecccc
Confidence 33455567888776655332356666665
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=80.49 E-value=0.98 Score=38.28 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=26.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
|||.|||.|..|-..|..|++. +.+.+|++..+.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~----~~~~~V~v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNL----HPDAEIQWYEKG 34 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH----CTTSEEEEEESS
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 6899999999999999999986 113467666543
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.45 E-value=0.57 Score=43.03 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=29.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
|..|.|||.|.-|.+.|..|.+. |.+|.|..++
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~------g~~V~iiEk~ 33 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL------NKKVLVIEKR 33 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG------TCCEEEECSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC------CCcEEEEECC
Confidence 46799999999999999999988 9998887654
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.32 E-value=0.91 Score=39.71 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=46.1
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHH-HHcCceecC-CCcCCHhhhhccCCeE
Q 012479 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEA-RAAGFTEEN-GTLGDIYETISGSDLV 182 (462)
Q Consensus 108 l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A-~~~G~~~~d-~~~~~~~eav~~ADvV 182 (462)
.++ |||.|.| .|.+|..+.+.|.+. |. +|++..|+..+..... ....+...| ....+..++++++|+|
T Consensus 12 m~~-k~IlItGaTG~iG~~l~~~Ll~~------g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~v 84 (232)
T d2bkaa1 12 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVG 84 (232)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHhC------CCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccc
Confidence 455 8899999 899999999999988 74 6777776533221111 111111101 0123455678899999
Q ss_pred EEeec
Q 012479 183 LLLIS 187 (462)
Q Consensus 183 iLavp 187 (462)
+.++-
T Consensus 85 i~~~~ 89 (232)
T d2bkaa1 85 FCCLG 89 (232)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 98764
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.21 E-value=1.1 Score=40.46 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=51.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhccCCeEE
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
|+| |.+-|.|. +-+|.++|+.|.+. |.+|++..|+.++..+.+.+ .|.. ..++..
T Consensus 3 l~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~l~~~~~~--------------~~~~~~ 61 (264)
T d1spxa_ 3 FAE-KVAIITGSSNGIGRATAVLFARE------GAKVTITGRHAERLEETRQQILAAGVS--------------EQNVNS 61 (264)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHHHTTCC--------------GGGEEE
T ss_pred CCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCC--------------cCceEE
Confidence 788 87777775 58999999999999 99998887764332222221 1211 111222
Q ss_pred Ee---ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 184 LL---ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 184 La---vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+. +.++...++++++.....+=.+|+..+|.
T Consensus 62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 62 VVADVTTDAGQDEILSTTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC-
T ss_pred EEccCCCHHHHHHHHHHHHHHhCCCCEeeccccc
Confidence 22 23445566777766554333467777776
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.17 E-value=0.43 Score=42.92 Aligned_cols=36 Identities=17% Similarity=0.068 Sum_probs=30.4
Q ss_pred cCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 108 l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
|+| |++-|.| .+.+|.++|+.|.+. |.+|++..|+.
T Consensus 4 l~g-K~alITGas~GIG~aia~~la~~------G~~Vi~~~r~~ 40 (245)
T d2ag5a1 4 LDG-KVIILTAAAQGIGQAAALAFARE------GAKVIATDINE 40 (245)
T ss_dssp TTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 788 8877777 568999999999999 99998887753
|