Citrus Sinensis ID: 012495

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--

MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGDTFGDCSCMVRSSQVFRYPIYSFASGRRA

cHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHcccEEEEEccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccc

cHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

MFFCILFNYTILRDTKDVLVVTAkgssaeiipFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAfgfllyplsnaihPQALADKLLNilgprflgplAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDeakrfyplfglgaNVALIFSGRTVKYFSNLRknlgpgvdgwAVSLKGMMSIVVLMGLSICGLYWWvnnnvelptrskkkkekpkmgtmeSLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSklkaqfpspneyssfmgdfstaTGIATFTMMLLSQFVfdkfgwgvaakitPTVLLLTGVGFFslllfgdplgpalakfgmtPLLAAVYVGAMQNIFSksakyslfdpckemayipldedtkvkgkaAIDVvcnplgksggALIQQFMILTfgslanstpylggdtfgdcscmvrssqvfrypiysfasgrra

MFFCILFnytilrdtkDVLVVTAKgssaeiipflkTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVelptrskkkkekpkmgtmeslKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGDTFGDCSCMVRSsqvfrypiysfasgrra

MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTvivpfiaffgafgfllypLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSkkkkekpkMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGDTFGDCSCMVRSSQVFRYPIYSFASGRRA

*FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNV********************LKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGDTFGDCSCMVRSSQVFRYPIYSF******

MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWV**************************FLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGDTFGDCSCMVRSSQVFRYPIYSF******

MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPT************TMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGDTFGDCSCMVRSSQVFRYPIYSFASGRRA

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oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		462	2.2.26 [Sep-21-2011]
P92935		618	ADP,ATP carrier protein 2	yes	no	0.935	0.699	0.907	0.0
Q39002		624	ADP,ATP carrier protein 1	no	no	0.935	0.692	0.902	0.0
O24381		631	Plastidic ATP/ADP-transpo	N/A	no	0.937	0.686	0.916	0.0
Q9Z8J2		515	ADP,ATP carrier protein 1	yes	no	0.935	0.838	0.544	1e-131
O84068		528	ADP,ATP carrier protein 1	yes	no	0.945	0.827	0.536	1e-131
Q9PKX5		529	ADP,ATP carrier protein 1	yes	no	0.945	0.826	0.538	1e-131
P19568		498	ADP,ATP carrier protein 1	yes	no	0.926	0.859	0.411	7e-88
Q68XS7		498	ADP,ATP carrier protein 1	yes	no	0.930	0.863	0.404	2e-87
Q1RGS8		498	ADP,ATP carrier protein 1	yes	no	0.930	0.863	0.417	4e-87
Q4UN85		498	ADP,ATP carrier protein 1	yes	no	0.926	0.859	0.413	3e-84

>sp\|P92935\|TLC2_ARATH ADP,ATP carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=AATP2 PE=1 SV=2	Back alignment and function desciption

 Score =  800 bits (2065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/432 (90%), Positives = 411/432 (95%)

Query: 1   MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQ 60
           MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKL++ LSK+
Sbjct: 119 MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLSNVLSKK 178

Query: 61  ALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 120
           ALFYTVIVPFI +FGAFGF++YPLSN IHP+ALADKLL  LGPRF+GPLAIMRIWSFCLF
Sbjct: 179 ALFYTVIVPFIVYFGAFGFVMYPLSNLIHPEALADKLLATLGPRFMGPLAIMRIWSFCLF 238

Query: 121 YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKN 180
           YVMAELWGSVV+SVLFWGFANQITTVDEAK+FYPLFGLGANVALIFSGRTVKYFSN+RKN
Sbjct: 239 YVMAELWGSVVVSVLFWGFANQITTVDEAKKFYPLFGLGANVALIFSGRTVKYFSNMRKN 298

Query: 181 LGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKF 240
           LGPGVDGWAVSLK MMSIVV MGL+IC LYWWVN  V LPTRSKKKK KP+MGTMESLKF
Sbjct: 299 LGPGVDGWAVSLKAMMSIVVGMGLAICFLYWWVNRYVPLPTRSKKKKVKPQMGTMESLKF 358

Query: 241 LVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTM 300
           LVSS YIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYS+FMGDFST TGIATFTM
Sbjct: 359 LVSSPYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSAFMGDFSTCTGIATFTM 418

Query: 301 MLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVG 360
           MLLSQ+VF K+GWGVAAKITPTVLLLTGV FFSL+LFG P  P +AK GMTPLLAAVYVG
Sbjct: 419 MLLSQYVFKKYGWGVAAKITPTVLLLTGVAFFSLILFGGPFAPLVAKLGMTPLLAAVYVG 478

Query: 361 AMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILT 420
           A+QNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILT
Sbjct: 479 ALQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILT 538

Query: 421 FGSLANSTPYLG 432
           FGSLANSTPYLG
Sbjct: 539 FGSLANSTPYLG 550

Arabidopsis thaliana (taxid: 3702)

>sp\|Q39002\|TLC1_ARATH ADP,ATP carrier protein 1, chloroplastic OS=Arabidopsis thaliana GN=AATP1 PE=1 SV=2	Back alignment and function description

>sp\|O24381\|TLC1_SOLTU Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2	Back alignment and function description

>sp\|Q9Z8J2\|TLC1_CHLPN ADP,ATP carrier protein 1 OS=Chlamydia pneumoniae GN=tlcA PE=3 SV=1	Back alignment and function description

>sp\|O84068\|TLC1_CHLTR ADP,ATP carrier protein 1 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=tlcA PE=3 SV=1	Back alignment and function description

>sp\|Q9PKX5\|TLC1_CHLMU ADP,ATP carrier protein 1 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=tlcA PE=3 SV=1	Back alignment and function description

>sp\|P19568\|TLCA_RICPR ADP,ATP carrier protein 1 OS=Rickettsia prowazekii (strain Madrid E) GN=tlcA PE=1 SV=1	Back alignment and function description

>sp\|Q68XS7\|TLCA_RICTY ADP,ATP carrier protein 1 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=tlcA PE=3 SV=1	Back alignment and function description

>sp\|Q1RGS8\|TLCA_RICBR ADP,ATP carrier protein 1 OS=Rickettsia bellii (strain RML369-C) GN=tlcA PE=3 SV=1	Back alignment and function description

>sp\|Q4UN85\|TLCA_RICFE ADP,ATP carrier protein 1 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=tlcA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		462
21063925		588	plastidic ATP/ADP transporter [Citrus hy	0.937	0.736	0.997	0.0
312281659		624	unnamed protein product [Thellungiella h	0.935	0.692	0.909	0.0
15218214		618	ADP,ATP carrier protein 2 [Arabidopsis t	0.935	0.699	0.907	0.0
297844452		618	hypothetical protein ARALYDRAFT_471751 [	0.935	0.699	0.907	0.0
15220099		624	ADP,ATP carrier protein 1 [Arabidopsis t	0.935	0.692	0.902	0.0
15028093		624	putative adenine nucleotide translocase	0.935	0.692	0.900	0.0
6469340		623	adenine nucleotide translocase [Arabidop	0.935	0.693	0.900	0.0
224070859		623	ATP/ADP transporter [Populus trichocarpa	0.937	0.695	0.933	0.0
71068362		623	plastid ATP/ADP transport protein 2 [Man	0.937	0.695	0.944	0.0
71068360		623	plastid ATP/ADP transport protein 2 [Man	0.937	0.695	0.944	0.0

>gi\|21063925\|gb\|AAM29152.1\| plastidic ATP/ADP transporter [Citrus hybrid cultivar]	Back alignment and taxonomy information

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/433 (99%), Positives = 433/433 (100%)

Query: 1   MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQ 60
           MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQ
Sbjct: 93  MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQ 152

Query: 61  ALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 120
           ALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF
Sbjct: 153 ALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 212

Query: 121 YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKN 180
           YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKN
Sbjct: 213 YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKN 272

Query: 181 LGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKF 240
           LGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKF
Sbjct: 273 LGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMESLKF 332

Query: 241 LVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTM 300
           LVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTM
Sbjct: 333 LVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTM 392

Query: 301 MLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVG 360
           MLLSQF+FDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVG
Sbjct: 393 MLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVG 452

Query: 361 AMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILT 420
           AMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILT
Sbjct: 453 AMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILT 512

Query: 421 FGSLANSTPYLGG 433
           FGSLANSTPYLGG
Sbjct: 513 FGSLANSTPYLGG 525

Source: Citrus hybrid cultivar

Species: Citrus hybrid cultivar

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|312281659\|dbj\|BAJ33695.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi|15218214|ref|NP_173003.1| ADP,ATP carrier protein 2 [Arabidopsis thaliana] gi|26454676|sp|P92935.2|TLC2_ARATH RecName: Full=ADP,ATP carrier protein 2, chloroplastic; AltName: Full=ADP/ATP translocase 2; AltName: Full=Adenine nucleotide translocase 2; Flags: Precursor gi|8072388|gb|AAF71976.1|AC013453_1 Putative adenine nucleotide translocase [Arabidopsis thaliana] gi|19699007|gb|AAL91239.1| putative adenine nucleotide translocase [Arabidopsis thaliana] gi|21536623|gb|AAM60955.1| adenine nucleotide translocase, putative [Arabidopsis thaliana] gi|22136332|gb|AAM91244.1| putative adenine nucleotide translocase [Arabidopsis thaliana] gi|312174941|emb|CAA64329.2| AATP2 protein [Arabidopsis thaliana] gi|332191209|gb|AEE29330.1| ADP,ATP carrier protein 2 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297844452\|ref\|XP_002890107.1\| hypothetical protein ARALYDRAFT_471751 [Arabidopsis lyrata subsp. lyrata] gi\|297335949\|gb\|EFH66366.1\| hypothetical protein ARALYDRAFT_471751 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15220099|ref|NP_178146.1| ADP,ATP carrier protein 1 [Arabidopsis thaliana] gi|21264532|sp|Q39002.2|TLC1_ARATH RecName: Full=ADP,ATP carrier protein 1, chloroplastic; AltName: Full=ADP/ATP translocase 1; AltName: Full=Adenine nucleotide translocase 1; Flags: Precursor gi|12324978|gb|AAG52434.1|AC018848_5 adenine nucleotide translocase; 19474-21800 [Arabidopsis thaliana] gi|16226734|gb|AAL16246.1|AF428316_1 At1g80300/F5I6_5 [Arabidopsis thaliana] gi|110741072|dbj|BAE98630.1| adenine nucleotide translocase [Arabidopsis thaliana] gi|332198264|gb|AEE36385.1| ADP,ATP carrier protein 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|15028093\|gb\|AAK76577.1\| putative adenine nucleotide translocase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|6469340\|emb\|CAA89201.2\| adenine nucleotide translocase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224070859\|ref\|XP_002303268.1\| ATP/ADP transporter [Populus trichocarpa] gi\|222840700\|gb\|EEE78247.1\| ATP/ADP transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|71068362\|gb\|AAZ23108.1\| plastid ATP/ADP transport protein 2 [Manihot esculenta]	Back alignment and taxonomy information

>gi\|71068360\|gb\|AAZ23107.1\| plastid ATP/ADP transport protein 2 [Manihot esculenta]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		462
TAIR\|locus:2196588		618	ATNTT2 [Arabidopsis thaliana (	0.935	0.699	0.861	2.6e-196
TAIR\|locus:2034235		624	NTT1 "nucleotide transporter 1	0.935	0.692	0.854	1.1e-195

TAIR\|locus:2196588 ATNTT2 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1901 (674.2 bits), Expect = 2.6e-196, P = 2.6e-196
 Identities = 372/432 (86%), Positives = 387/432 (89%)

Query:     1 MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQ 60
             MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKL++ LSK+
Sbjct:   119 MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLSNVLSKK 178

Query:    61 ALFYTXXXXXXXXXXXXXXXXXXLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 120
             ALFYT                  LSN IHP+ALADKLL  LGPRF+GPLAIMRIWSFCLF
Sbjct:   179 ALFYTVIVPFIVYFGAFGFVMYPLSNLIHPEALADKLLATLGPRFMGPLAIMRIWSFCLF 238

Query:   121 YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKN 180
             YVMAELWGSVV+SVLFWGFANQITTVDEAK+FYPLFGLGANVALIFSGRTVKYFSN+RKN
Sbjct:   239 YVMAELWGSVVVSVLFWGFANQITTVDEAKKFYPLFGLGANVALIFSGRTVKYFSNMRKN 298

Query:   181 LGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSXXXXXXXXMGTMESLKF 240
             LGPGVDGWAVSLK MMSIVV MGL+IC LYWWVN  V LPTRS        MGTMESLKF
Sbjct:   299 LGPGVDGWAVSLKAMMSIVVGMGLAICFLYWWVNRYVPLPTRSKKKKVKPQMGTMESLKF 358

Query:   241 LVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTM 300
             LVSS YIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYS+FMGDFST TGIATFTM
Sbjct:   359 LVSSPYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSAFMGDFSTCTGIATFTM 418

Query:   301 MLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLAAVYVG 360
             MLLSQ+VF K+GWGVAAKITPTVLLLTGV FFSL+LFG P  P +AK GMTPLLAAVYVG
Sbjct:   419 MLLSQYVFKKYGWGVAAKITPTVLLLTGVAFFSLILFGGPFAPLVAKLGMTPLLAAVYVG 478

Query:   361 AMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILT 420
             A+QNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILT
Sbjct:   479 ALQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILT 538

Query:   421 FGSLANSTPYLG 432
             FGSLANSTPYLG
Sbjct:   539 FGSLANSTPYLG 550

GO:0005471 "ATP:ADP antiporter activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR\|locus:2034235 NTT1 "nucleotide transporter 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9PKX5	TLC1_CHLMU	No assigned EC number	0.5382	0.9458	0.8260	yes	no
P19568	TLCA_RICPR	No assigned EC number	0.4116	0.9264	0.8594	yes	no
Q92JI6	TLCA_RICCN	No assigned EC number	0.4049	0.9264	0.8594	yes	no
Q68XS7	TLCA_RICTY	No assigned EC number	0.4044	0.9307	0.8634	yes	no
O84068	TLC1_CHLTR	No assigned EC number	0.5360	0.9458	0.8276	yes	no
Q4UN85	TLCA_RICFE	No assigned EC number	0.4138	0.9264	0.8594	yes	no
Q39002	TLC1_ARATH	No assigned EC number	0.9027	0.9350	0.6923	no	no
Q1RGS8	TLCA_RICBR	No assigned EC number	0.4179	0.9307	0.8634	yes	no
P92935	TLC2_ARATH	No assigned EC number	0.9074	0.9350	0.6990	yes	no
O24381	TLC1_SOLTU	No assigned EC number	0.9168	0.9372	0.6862	N/A	no
Q9Z8J2	TLC1_CHLPN	No assigned EC number	0.5442	0.9350	0.8388	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		462
TIGR00769		472	TIGR00769, AAA, ADP/ATP carrier protein family	0.0
pfam03219		491	pfam03219, TLC, TLC ATP/ADP transporter	0.0
COG3202		509	COG3202, COG3202, ATP/ADP translocase [Energy prod	1e-139

>gnl\|CDD\|233122 TIGR00769, AAA, ADP/ATP carrier protein family	Back alignment and domain information

 Score =  726 bits (1876), Expect = 0.0
 Identities = 326/438 (74%), Positives = 365/438 (83%), Gaps = 5/438 (1%)

Query: 1   MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQ 60
           MFFCILFNYTILRDTKD LVVTAKGS AEIIPFLKTWV +PMA+ FML+YTKL++ LSK+
Sbjct: 15  MFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKE 74

Query: 61  ALFYTVIVPFIAFFGAFGFLLYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLF 120
           ALFYTVI PF+ FF  F F++YPLS+ +HP ALADKLL++L P F+G +AI+RIWSF LF
Sbjct: 75  ALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALF 134

Query: 121 YVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANVALIFSGRTVKYFSNLRKN 180
           YVMAELWGSVV+S+LFWGFANQITT+DEAKRFY LFGLGANVALIFSGRT+KYFS LR +
Sbjct: 135 YVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRAS 194

Query: 181 LGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRS-----KKKKEKPKMGTM 235
           LGPGVDGW VSLK +M IV+  GL+I  LYWWVN NV    RS     K+KK KPKM TM
Sbjct: 195 LGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTM 254

Query: 236 ESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGI 295
           ESLKFLVSS YI DLA LV+AYGISINLVEVTWKSKLKAQ+PSPNEYS+FMGDFST TG+
Sbjct: 255 ESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGV 314

Query: 296 ATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLLA 355
            + TMMLLS  V  K+GW  AA ITP V+LLTGV FFSL+ FG P  P +AK GMTPLL 
Sbjct: 315 VSVTMMLLSGNVIRKYGWLTAALITPLVMLLTGVAFFSLIFFGGPAAPLVAKLGMTPLLL 374

Query: 356 AVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQ 415
           AVYVGA+QNI SKS KYSLFD  KEMAYIPLDE+ KVKGKAAIDVV   LGKSGGALIQQ
Sbjct: 375 AVYVGAIQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQ 434

Query: 416 FMILTFGSLANSTPYLGG 433
            +++ FGSLA STPYL  
Sbjct: 435 GLLVIFGSLAASTPYLAV 452

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers [Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 472

>gnl\|CDD\|217431 pfam03219, TLC, TLC ATP/ADP transporter	Back alignment and domain information

>gnl\|CDD\|225743 COG3202, COG3202, ATP/ADP translocase [Energy production and conversion]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		462
PF03219		491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	100.0
TIGR00769		472	AAA ADP/ATP carrier protein family. These proteins	100.0
COG3202		509	ATP/ADP translocase [Energy production and convers	100.0
PRK11195		393	lysophospholipid transporter LplT; Provisional	99.65
TIGR00900		365	2A0121 H+ Antiporter protein.	99.64
PRK10054		395	putative transporter; Provisional	99.61
PRK03545		390	putative arabinose transporter; Provisional	99.6
PRK11902		402	ampG muropeptide transporter; Reviewed	99.58
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	99.57
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	99.56
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	99.54
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	99.53
PRK09874		408	drug efflux system protein MdtG; Provisional	99.53
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	99.53
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.52
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.51
TIGR00893		399	2A0114 d-galactonate transporter.	99.51
PRK10213		394	nepI ribonucleoside transporter; Reviewed	99.51
PRK10489		417	enterobactin exporter EntS; Provisional	99.48
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	99.46
PRK10504		471	putative transporter; Provisional	99.46
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	99.45
PRK11646		400	multidrug resistance protein MdtH; Provisional	99.45
PRK10473		392	multidrug efflux system protein MdtL; Provisional	99.44
KOG2615		451	consensus Permease of the major facilitator superf	99.42
PRK11652		394	emrD multidrug resistance protein D; Provisional	99.42
PRK15403		413	multidrug efflux system protein MdtM; Provisional	99.41
PRK03633		381	putative MFS family transporter protein; Provision	99.4
TIGR00891		405	2A0112 putative sialic acid transporter.	99.39
PRK09528		420	lacY galactoside permease; Reviewed	99.39
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	99.39
TIGR00901		356	2A0125 AmpG-related permease.	99.37
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	99.37
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	99.37
PRK10091		382	MFS transport protein AraJ; Provisional	99.37
PRK12382		392	putative transporter; Provisional	99.37
PRK14995		495	methyl viologen resistance protein SmvA; Provision	99.37
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.36
TIGR00897		402	2A0118 polyol permease family. This family of prot	99.36
PRK11010		491	ampG muropeptide transporter; Validated	99.35
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	99.34
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.34
PRK15011		393	sugar efflux transporter B; Provisional	99.34
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	99.33
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	99.33
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.33
PRK12307		426	putative sialic acid transporter; Provisional	99.31
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	99.31
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	99.31
PRK11043		401	putative transporter; Provisional	99.31
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.3
PRK05122		399	major facilitator superfamily transporter; Provisi	99.3
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	99.28
PRK10429		473	melibiose:sodium symporter; Provisional	99.27
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	99.27
PRK03699		394	putative transporter; Provisional	99.26
PRK09952		438	shikimate transporter; Provisional	99.25
PRK11663		434	regulatory protein UhpC; Provisional	99.24
PRK10133		438	L-fucose transporter; Provisional	99.22
PLN00028		476	nitrate transmembrane transporter; Provisional	99.22
PRK03893		496	putative sialic acid transporter; Provisional	99.21
TIGR00898		505	2A0119 cation transport protein.	99.2
PF13347		428	MFS_2: MFS/sugar transport protein	99.2
TIGR00895		398	2A0115 benzoate transport.	99.18
PRK09705		393	cynX putative cyanate transporter; Provisional	99.18
PRK15075		434	citrate-proton symporter; Provisional	99.14
PRK10406		432	alpha-ketoglutarate transporter; Provisional	99.14
TIGR00896		355	CynX cyanate transporter. This family of proteins	99.12
PRK09669		444	putative symporter YagG; Provisional	99.1
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.1
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.07
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	99.07
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	99.06
PF01306		412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.05
PRK09848		448	glucuronide transporter; Provisional	99.04
PRK10642		490	proline/glycine betaine transporter; Provisional	99.02
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.99
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	98.96
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.96
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.95
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.95
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	98.95
COG2211		467	MelB Na+/melibiose symporter and related transport	98.91
TIGR00892		455	2A0113 monocarboxylate transporter 1.	98.89
PRK09584		500	tppB putative tripeptide transporter permease; Rev	98.87
PRK10077		479	xylE D-xylose transporter XylE; Provisional	98.87
PRK11462		460	putative transporter; Provisional	98.86
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	98.85
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	98.83
TIGR00805		633	oat sodium-independent organic anion transporter.	98.79
PRK10207		489	dipeptide/tripeptide permease B; Provisional	98.77
KOG2816		463	consensus Predicted transporter ADD1 (major facili	98.76
KOG1330		493	consensus Sugar transporter/spinster transmembrane	98.73
KOG3764		464	consensus Vesicular amine transporter [Intracellul	98.65
TIGR01301		477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.63
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	98.54
PF03209		403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.52
COG2223		417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.44
PRK15462		493	dipeptide/tripeptide permease D; Provisional	98.42
TIGR00788		468	fbt folate/biopterin transporter. The only functio	98.42
TIGR00806		511	rfc RFC reduced folate carrier. Proteins of the RF	98.41
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	98.29
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	98.26
PF05631		354	DUF791: Protein of unknown function (DUF791); Inte	98.25
COG0738		422	FucP Fucose permease [Carbohydrate transport and m	98.19
KOG2325		488	consensus Predicted transporter/transmembrane prot	98.19
TIGR00880		141	2_A_01_02 Multidrug resistance protein.	98.16
KOG2533		495	consensus Permease of the major facilitator superf	98.13
KOG2532		466	consensus Permease of the major facilitator superf	98.05
COG2270		438	Permeases of the major facilitator superfamily [Ge	98.0
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.91
KOG0569		485	consensus Permease of the major facilitator superf	97.87
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.81
PTZ00207		591	hypothetical protein; Provisional	97.76
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	97.75
KOG0255		521	consensus Synaptic vesicle transporter SVOP and re	97.73
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	97.67
PRK10489		417	enterobactin exporter EntS; Provisional	97.64
PRK09528		420	lacY galactoside permease; Reviewed	97.61
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	97.55
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	97.55
PRK10504		471	putative transporter; Provisional	97.53
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	97.52
TIGR00895		398	2A0115 benzoate transport.	97.5
TIGR00900		365	2A0121 H+ Antiporter protein.	97.5
PRK10642		490	proline/glycine betaine transporter; Provisional	97.5
PRK09848		448	glucuronide transporter; Provisional	97.45
PRK09705		393	cynX putative cyanate transporter; Provisional	97.45
PRK05122		399	major facilitator superfamily transporter; Provisi	97.44
PRK11010		491	ampG muropeptide transporter; Validated	97.43
PRK09874		408	drug efflux system protein MdtG; Provisional	97.43
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	97.39
PRK03893		496	putative sialic acid transporter; Provisional	97.36
PRK09669		444	putative symporter YagG; Provisional	97.36
COG2211		467	MelB Na+/melibiose symporter and related transport	97.36
TIGR00891		405	2A0112 putative sialic acid transporter.	97.34
PRK10429		473	melibiose:sodium symporter; Provisional	97.3
PRK12307		426	putative sialic acid transporter; Provisional	97.29
PRK03699		394	putative transporter; Provisional	97.27
PRK15011		393	sugar efflux transporter B; Provisional	97.27
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	97.21
PRK03633		381	putative MFS family transporter protein; Provision	97.17
KOG0254		513	consensus Predicted transporter (major facilitator	97.16
PF13347		428	MFS_2: MFS/sugar transport protein	97.15
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	97.15
PRK09952		438	shikimate transporter; Provisional	97.14
TIGR00892		455	2A0113 monocarboxylate transporter 1.	97.14
PRK11902		402	ampG muropeptide transporter; Reviewed	97.13
TIGR00901		356	2A0125 AmpG-related permease.	97.11
TIGR00893		399	2A0114 d-galactonate transporter.	97.1
PRK10077		479	xylE D-xylose transporter XylE; Provisional	97.07
PRK12382		392	putative transporter; Provisional	96.96
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	96.96
TIGR00898		505	2A0119 cation transport protein.	96.92
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	96.91
PRK03545		390	putative arabinose transporter; Provisional	96.9
COG2807		395	CynX Cyanate permease [Inorganic ion transport and	96.81
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.81
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.76
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	96.74
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	96.71
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	96.7
PF03092		433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.66
PRK11646		400	multidrug resistance protein MdtH; Provisional	96.66
TIGR00897		402	2A0118 polyol permease family. This family of prot	96.64
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	96.61
PF06609		599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.6
KOG2504		509	consensus Monocarboxylate transporter [Carbohydrat	96.6
PRK10406		432	alpha-ketoglutarate transporter; Provisional	96.58
PRK15075		434	citrate-proton symporter; Provisional	96.48
PRK11663		434	regulatory protein UhpC; Provisional	96.33
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	96.33
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	96.29
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.28
PRK09584		500	tppB putative tripeptide transporter permease; Rev	96.27
TIGR00896		355	CynX cyanate transporter. This family of proteins	96.25
PRK14995		495	methyl viologen resistance protein SmvA; Provision	96.17
PRK10207		489	dipeptide/tripeptide permease B; Provisional	96.11
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	96.08
PF06963		432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.04
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	95.93
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	95.88
PLN00028		476	nitrate transmembrane transporter; Provisional	95.78
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	95.68
TIGR00788		468	fbt folate/biopterin transporter. The only functio	95.59
KOG0252		538	consensus Inorganic phosphate transporter [Inorgan	95.59
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	95.52
PRK10473		392	multidrug efflux system protein MdtL; Provisional	95.37
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	95.29
PRK10054		395	putative transporter; Provisional	95.15
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	94.96
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	94.94
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	94.85
PRK11195		393	lysophospholipid transporter LplT; Provisional	94.81
COG3104		498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	94.8
PRK11462		460	putative transporter; Provisional	94.71
PRK10091		382	MFS transport protein AraJ; Provisional	94.53
KOG4686		459	consensus Predicted sugar transporter [Carbohydrat	94.43
PF12832		77	MFS_1_like: MFS_1 like family	94.4
PF05978		156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.35
PRK11043		401	putative transporter; Provisional	94.34
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	94.27
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	94.13
PRK10213		394	nepI ribonucleoside transporter; Reviewed	94.06
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	93.88
KOG3626		735	consensus Organic anion transporter [Secondary met	93.76
KOG0569		485	consensus Permease of the major facilitator superf	93.33
COG2270		438	Permeases of the major facilitator superfamily [Ge	93.31
COG2223		417	NarK Nitrate/nitrite transporter [Inorganic ion tr	93.16
COG0477		338	ProP Permeases of the major facilitator superfamil	92.86
PRK11652		394	emrD multidrug resistance protein D; Provisional	92.62
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	92.1
PF03137		539	OATP: Organic Anion Transporter Polypeptide (OATP)	91.77
PF01770		412	Folate_carrier: Reduced folate carrier; InterPro:	91.21
PRK10133		438	L-fucose transporter; Provisional	91.08
PF01306		412	LacY_symp: LacY proton/sugar symporter; InterPro:	91.0
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	90.87
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	90.16
KOG3098		461	consensus Uncharacterized conserved protein [Funct	89.21
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	89.15
KOG2504		509	consensus Monocarboxylate transporter [Carbohydrat	89.01
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	88.86
KOG3762		618	consensus Predicted transporter [General function	87.99
PRK15403		413	multidrug efflux system protein MdtM; Provisional	84.82
PTZ00207		591	hypothetical protein; Provisional	84.2
KOG0255		521	consensus Synaptic vesicle transporter SVOP and re	82.73
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	82.6
KOG0637		498	consensus Sucrose transporter and related proteins	81.41

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions	Back alignment and domain information

Probab=100.00  E-value=3.5e-93  Score=741.70  Aligned_cols=449  Identities=59%  Similarity=1.006  Sum_probs=421.7

Q ss_pred             CchhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHH
Q 012495            1 MFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFL   80 (462)
Q Consensus         1 ~~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~   80 (462)
                      ||||+.++|+++|++||++++++.|  ||++||+|+|.++|++++++.+|+|++||++|++++++++.+|+++|++|+++
T Consensus        32 m~f~i~f~y~~lR~~KD~lvvt~~g--ae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~v  109 (491)
T PF03219_consen   32 MFFFILFNYTILRDLKDTLVVTAQG--AEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFV  109 (491)
T ss_pred             HHHHHHHHHHHHHHhcCeEEEecCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999986  99999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHH
Q 012495           81 LYPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGA  160 (462)
Q Consensus        81 l~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~  160 (462)
                      +||++|.+||+.++|+++...+++++|++.+.|+|++++||+++|+||++++|++||+++||+||.|||||+||++++|+
T Consensus       110 lyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ga  189 (491)
T PF03219_consen  110 LYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGA  189 (491)
T ss_pred             HhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHhhh-hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCc----cccccccCCCCCh
Q 012495          161 NVALIFSGRTVKYFSN-LRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNV-ELPT----RSKKKKEKPKMGT  234 (462)
Q Consensus       161 ~lG~i~gg~~~~~l~~-~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~-~~p~----~~~~~~~k~~~~~  234 (462)
                      |+|.++||.++.++++ .++..+++.+.|...++.++....++|.+++..++++++.. +.|+    ..+++|+|+|.++
T Consensus       190 nigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~~~~~~kk~k~k~s~  269 (491)
T PF03219_consen  190 NIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYPSAKKKKKKKPKMSL  269 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccchhhhcccccCCCccH
Confidence            9999999999999998 66667777888887777777777788888888888887765 2332    2345677788999


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchh
Q 012495          235 MESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWG  314 (462)
Q Consensus       235 ~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~  314 (462)
                      .|++|.++||||+++|++++++|+++.|++|++||..+++.|+|++|+++|+|.++.++|+++++.++++++++||+||+
T Consensus       270 ~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  270 KESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999987668899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcc-cchhHHHHHHHHHHHHHHHHhhhhhccccchhhccccCCchhhhc
Q 012495          315 VAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKF-GMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVK  393 (462)
Q Consensus       315 ~~~~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~-~~~p~~~~v~~g~~~~~~~k~~~ysl~~p~ke~l~~~l~~~~r~k  393 (462)
                      .+++++|+++++++++||++.++++...+..+.+ +.+|+.+++++|++||+++|+.|||++||+|||+|+|+|+|+|+|
T Consensus       350 ~~AlitPiv~lit~~~FF~~~~f~~~~~~~~~~~~~~~pl~lav~~G~i~~v~~K~~kYs~fd~~kEm~yipld~e~k~k  429 (491)
T PF03219_consen  350 TAALITPIVILITGLLFFGFILFNNSLGPIVASLFGTSPLMLAVFFGAIQNVLSKSAKYSLFDPTKEMAYIPLDPESKYK  429 (491)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhccchHHHHHHHHHHHHHHHhhcceeecchhhhhhcccCCHHHHhh
Confidence            9999999999999999999999988777666666 889999999999999999999999999999999999999999999


Q ss_pred             cceeeeeecccchhhHHHHHHHHHHHHh--hhhhhhhhHHHHHHHHHHHHHHHHhhhhcc
Q 012495          394 GKAAIDVVCNPLGKSGGALIQQFMILTF--GSLANSTPYLGGDTFGDCSCMVRSSQVFRY  451 (462)
Q Consensus       394 ~K~~iD~l~~r~Gk~~gs~i~~~l~~~~--~~~~~~~~~~~~~~~~~~~~Wi~~~~~~~~  451 (462)
                      +|+++|++|+|+||++||++|++++..+  ++++..+|+++.+.+++|.+|+++..+|.+
T Consensus       430 ~Ka~iD~~~~r~GKs~gs~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~Wi~~v~~L~~  489 (491)
T PF03219_consen  430 GKAAIDVVGSRLGKSGGSLIQQGLLSLFPSGSIRASTPYLAVILIIIIILWIYAVIYLNK  489 (491)
T ss_pred             cceeeeeeccchhhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999  669999999999999999999999999874

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family	Back alignment and domain information

>COG3202 ATP/ADP translocase [Energy production and conversion]	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>TIGR00805 oat sodium-independent organic anion transporter	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon	Back alignment and domain information

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK15462 dipeptide/tripeptide permease D; Provisional	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>TIGR00806 rfc RFC reduced folate carrier	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]	Back alignment and domain information

>TIGR00880 2_A_01_02 Multidrug resistance protein	Back alignment and domain information

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins	Back alignment and domain information

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF12832 MFS_1_like: MFS_1 like family	Back alignment and domain information

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)	Back alignment and domain information

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>KOG3762 consensus Predicted transporter [General function prediction only]	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		462
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	99.65
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	99.55
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	99.38
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	99.23
2cfq_A		417	Lactose permease; transport, transport mechanism,	99.07
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	98.77
2xut_A		524	Proton/peptide symporter family protein; transport	98.31
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	97.85
2cfq_A		417	Lactose permease; transport, transport mechanism,	97.67
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	97.46
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	97.17
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	96.73
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	95.46
2xut_A		524	Proton/peptide symporter family protein; transport	91.99

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

Probab=99.65  E-value=2.9e-13  Score=137.95  Aligned_cols=282  Identities=9%  Similarity=-0.068  Sum_probs=183.8

Q ss_pred             hhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHh
Q 012495            3 FCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLLY   82 (462)
Q Consensus         3 F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l~   82 (462)
                      |+..+.++..-|+.+.+. +++|-+.++++++.....+ ...+..|..|+++||+|||+++......+++..++++....
T Consensus        36 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~-~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~  113 (438)
T 3o7q_A           36 FLWAVANNLNDILLPQFQ-QAFTLTNFQAGLIQSAFYF-GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE  113 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHH-HHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHH-HHcCCCHHHHHHHHHHHHH-HHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc
Confidence            344455566666666544 3366667889999987765 44689999999999999999999988888877766643210


Q ss_pred             hcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhhhhhhhhhHHHH
Q 012495           83 PLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVDEAKRFYPLFGLGANV  162 (462)
Q Consensus        83 p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~el~~~~~~s~lfwa~~ndi~~~~qakR~fgli~ag~~l  162 (462)
                            .                      .+.|...+.+++.++......+ ...++++|.+++||+.+.+++...+.++
T Consensus       114 ------~----------------------~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~  164 (438)
T 3o7q_A          114 ------I----------------------MNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSF  164 (438)
T ss_dssp             ------T----------------------TCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred             ------c----------------------ccHHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence                  0                      1457777778888887767777 5899999999999999999999999999


Q ss_pred             HHHhhhhhHHHhhhhhccCCCCCc------------hhHHH-H-HHHHHHHHHHHHHHHHH-HHHHhhhcCCCcccccc-
Q 012495          163 ALIFSGRTVKYFSNLRKNLGPGVD------------GWAVS-L-KGMMSIVVLMGLSICGL-YWWVNNNVELPTRSKKK-  226 (462)
Q Consensus       163 G~i~gg~~~~~l~~~~~~~gp~~~------------~~~~~-~-~~l~~~~~~~g~l~l~~-~~~~~~~~~~p~~~~~~-  226 (462)
                      |.++|+.+...+....  .++..+            +|... . .....+ .+.+...+.. .....  ...||+++++ 
T Consensus       165 g~~~g~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~--~~~p~~~~~~~  239 (438)
T 3o7q_A          165 GAIIAVVFGQSLILSN--VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY-MIIVAIVLLVALLIML--TKFPALQSDNH  239 (438)
T ss_dssp             HHHHHHHHTTHHHHTS--SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--CCCCCCTTTCC
T ss_pred             HHHHHHHHHHHHHhcc--cccccccccccCCcchhhhhhhhhhhhHHHHH-HHHHHHHHHHHHHHHH--HcCCccccccc
Confidence            9999999888765211  111000            00000 0 011111 1111111111 11111  2234433222 


Q ss_pred             ccCCCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhH
Q 012495          227 KEKPKMGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSK-LKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQ  305 (462)
Q Consensus       227 ~~k~~~~~~~~l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~-~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~  305 (462)
                      +++++.+..+.++.++|+|.+...+...+++......+......+ .++.++.+++..+.   .....++..++-.++.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~g  316 (438)
T 3o7q_A          240 SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAAN---YLTGTMVCFFIGRFTGT  316 (438)
T ss_dssp             CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHH---HHHHHHHHHHHHHHHHH
Confidence            223345667888999999998888887777777776676666777 77766655544333   34444555555567788


Q ss_pred             HHHHHhchhHHHHHHHHH
Q 012495          306 FVFDKFGWGVAAKITPTV  323 (462)
Q Consensus       306 ~li~r~G~~~~~~i~P~~  323 (462)
                      ++.+|+|.++...+.-++
T Consensus       317 ~l~~r~~~~~~~~~~~~~  334 (438)
T 3o7q_A          317 WLISRFAPHKVLAAYALI  334 (438)
T ss_dssp             HHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHhcchHHHHHHHHH
Confidence            999999999887766553

PyMOL of 3o7q

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		462
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	99.49
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	99.49
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	97.53
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	97.41

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=5.1e-12  Score=122.71  Aligned_cols=350  Identities=9%  Similarity=0.045  Sum_probs=176.3

Q ss_pred             chhhHHHHHHhhhccceeeecccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHH
Q 012495            2 FFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLADKLSKQALFYTVIVPFIAFFGAFGFLL   81 (462)
Q Consensus         2 ~F~i~~~y~ilr~~~d~l~~~~~g~~a~~l~~l~~~~~l~~~~~~~~~~~~L~~r~~r~~v~~~~l~~f~~~~~lf~~~l   81 (462)
                      +|+..+++++.-|.-+....+..|-++++++++.....++. .+..|..|+++||+||||++........+...++.+..
T Consensus        16 ~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~-~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~   94 (417)
T d1pv7a_          16 FFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFS-LLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI   94 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhh
Confidence            46667788888887776555555655889999999777544 68999999999999999999888877777666655431


Q ss_pred             hhcccccCCchHHHHHhhhhCCCcchhhhhhhhhHHHHHHHHHH-HHHH---HHHHHHHHHHHHhhCChhhhhhhhhhhh
Q 012495           82 YPLSNAIHPQALADKLLNILGPRFLGPLAIMRIWSFCLFYVMAE-LWGS---VVISVLFWGFANQITTVDEAKRFYPLFG  157 (462)
Q Consensus        82 ~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~w~~~~fyv~~e-l~~~---~~~s~lfwa~~ndi~~~~qakR~fgli~  157 (462)
                      .         . ..                 ..+.......... ..+.   .... .......|  ..+++.+..+...
T Consensus        95 ~---------~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~  144 (417)
T d1pv7a_          95 F---------G-PL-----------------LQYNILVGSIVGGIYLGFCFNAGAP-AVEAFIEK--VSRRSNFEFGRAR  144 (417)
T ss_dssp             H---------H-HH-----------------HHTTCHHHHHHTTTTGGGGGTTHHH-HHHHHHHH--HHHHHSCCHHHHH
T ss_pred             h---------h-hh-----------------HHHHHHHHHHHhhhcccccccchhh-cccccccc--hhhhhHHHHHHHh
Confidence            0         0 00                 0000000001111 1110   1111 11222221  1345556677777


Q ss_pred             hHHHHHHHhhhhhHHHhhhhhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccccccCCCCChHHH
Q 012495          158 LGANVALIFSGRTVKYFSNLRKNLGPGVDGWAVSLKGMMSIVVLMGLSICGLYWWVNNNVELPTRSKKKKEKPKMGTMES  237 (462)
Q Consensus       158 ag~~lG~i~gg~~~~~l~~~~~~~gp~~~~~~~~~~~l~~~~~~~g~l~l~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~  237 (462)
                      .+.+.|.++|+.+...+.....         ....   ...................+....++++++++++++....+.
T Consensus       145 ~~~~~~~~~~~~~~~~l~~~~~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (417)
T d1pv7a_         145 MFGCVGWALGASIVGIMFTINN---------QFVF---WLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL  212 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCH---------HHHH---HHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHH
T ss_pred             hhhccccccccccccccccccc---------cccc---cchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccc
Confidence            8888888887777665542110         0000   000011111111111111111111111111222222233444


Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhhhHHhhHHHHHHHHHHHHHHhhHHHHHHhchhHHH
Q 012495          238 LKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFVFDKFGWGVAA  317 (462)
Q Consensus       238 l~~i~~s~yl~~l~~~v~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~f~g~~~~~~gi~~l~q~~l~~~li~r~G~~~~~  317 (462)
                      .+...+.+....+....+......................+...-....+......++.......+.+++.+|.|.+...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~  292 (417)
T d1pv7a_         213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL  292 (417)
T ss_dssp             HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHH
T ss_pred             cccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccch
Confidence            45555666655555555555555555555555555544444443334444444444455555677888999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHH-HHHHHHHHHHHHHHhhhhhccccchh-hccccCCchhhhccc
Q 012495          318 KITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMTPLL-AAVYVGAMQNIFSKSAKYSLFDPCKE-MAYIPLDEDTKVKGK  395 (462)
Q Consensus       318 ~i~P~~~l~~~~~ff~l~~~~~~~~~~~~~~~~~p~~-~~v~~g~~~~~~~k~~~ysl~~p~ke-~l~~~l~~~~r~k~K  395 (462)
                      .+.-++   .+++.+.+.+..+.   .       ... ...+.|.         .++...|.-. .+-.-.|+|.|.+..
T Consensus       293 ~~~~~~---~~~~~~~~~~~~~~---~-------~~~~~~~l~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (417)
T d1pv7a_         293 LLAGTI---MSVRIIGSSFATSA---L-------EVVILKTLHMF---------EVPFLLVGCFKYITSQFEVRFSATIY  350 (417)
T ss_dssp             HHHHHH---HHHHHHHHHTCCCH---H-------HHHHHHHHHHH---------HHHHHHHHHHHHHHHHSCGGGHHHHH
T ss_pred             hhhHHH---HHHhhhcccccccc---c-------hhhHHHHHHHH---------HHHHHHHHHHHHHHHHCCHhHHHHHH
Confidence            776663   34444434332211   0       001 1112222         2233333332 233345677777766


Q ss_pred             eeeeeecccchhhHHHHHHHH
Q 012495          396 AAIDVVCNPLGKSGGALIQQF  416 (462)
Q Consensus       396 ~~iD~l~~r~Gk~~gs~i~~~  416 (462)
                      +..-.++..+|..+|+.+...
T Consensus       351 ~~~~~~~~~~g~~i~~~~~G~  371 (417)
T d1pv7a_         351 LVCFCFFKQLAMIFMSVLAGN  371 (417)
T ss_dssp             HHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            655555555666666555433

PyMOL of d1pv7a_

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure