Citrus Sinensis ID: 012504
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 462 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FJY7 | 620 | Pentatricopeptide repeat- | yes | no | 0.958 | 0.714 | 0.351 | 2e-84 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.958 | 0.685 | 0.342 | 9e-83 | |
| Q9ZQA1 | 501 | Pentatricopeptide repeat- | no | no | 0.941 | 0.868 | 0.382 | 1e-82 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.952 | 0.739 | 0.366 | 4e-82 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.852 | 0.531 | 0.389 | 9e-81 | |
| Q9C6T2 | 606 | Pentatricopeptide repeat- | no | no | 0.976 | 0.744 | 0.359 | 1e-80 | |
| Q9STF3 | 657 | Pentatricopeptide repeat- | no | no | 0.924 | 0.649 | 0.364 | 2e-77 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.854 | 0.552 | 0.355 | 2e-77 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.950 | 0.705 | 0.333 | 2e-77 | |
| Q9SN85 | 591 | Pentatricopeptide repeat- | no | no | 0.971 | 0.759 | 0.357 | 3e-77 |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 313 bits (802), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 277/481 (57%), Gaps = 38/481 (7%)
Query: 10 IQLSKTVHHLHQLHTLFLKTSLDHNTCIISRF----ILTSLSISLHFTRSLFNNLPVTPP 65
+Q L Q+H LKT L ++ I++F I ++ S L + + +F+ P
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFD-RPD 79
Query: 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125
F +N +IR ++ + S+ L+ ML + + +T+P ++KAC +H+
Sbjct: 80 TFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHA 139
Query: 126 LIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSM------------ 173
I K+G ++D Y N+L+ YA +A +F+ +P D VSW+S+
Sbjct: 140 QITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199
Query: 174 -------------------IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTS 214
I+G+V D +AL++FH M+ ++ P++V+L + +SAC
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQ 259
Query: 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIM 274
L + G+ IHSY + +D LG L++MY+KCG +E+A +VF +++K++Q+WT +
Sbjct: 260 LGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTAL 319
Query: 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN 334
ISG A +G G AIS F +M + G+KP+ I+F+A+L+ACS+ GLV+EGK F M R YN
Sbjct: 320 ISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYN 379
Query: 335 IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNL 394
+KPT+EHYGC+VD+LGRAGL++EA I+ MP +PNAVI + L ACR H + L + +
Sbjct: 380 LKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNI-ELGEEI 438
Query: 395 GKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAE 454
G++L+ ++P G YV A++ ++ WD AAE + ++G+ KVPGCS + + +G+
Sbjct: 439 GEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISL-EGTTH 497
Query: 455 E 455
E
Sbjct: 498 E 498
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 171/499 (34%), Positives = 274/499 (54%), Gaps = 56/499 (11%)
Query: 14 KTVHHLHQLHTLFLKTSLDHNTCI---ISRFILTS--LSISLHFTRSLFNNLPVTPPLFA 68
+T+ L Q+H +F+K+ +T I RF TS L + +FN +P F+
Sbjct: 34 RTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMP-QRNCFS 92
Query: 69 YNTLIRAYAKTS--CSIESIKLFDEMLKTG-LRPDNFTYPFVVKACGRCLLIGIGGSVHS 125
+NT+IR ++++ ++ +I LF EM+ + P+ FT+P V+KAC + I G +H
Sbjct: 93 WNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHG 152
Query: 126 LIFKVGLDSDKYIGNTLLRMYAACK----------------------------------- 150
L K G D+++ + L+RMY C
Sbjct: 153 LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWN 212
Query: 151 ----------EIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESP 200
+ A+ +F++M R VVSW++MI+G+ DA++VF MK + P
Sbjct: 213 VMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRP 272
Query: 201 NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVF 260
N VTLVS++ A + L ++ GE +H YA +G+ +D LG+AL++MYSKCG +EKA VF
Sbjct: 273 NYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVF 332
Query: 261 NLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD 320
+ +N+ +W+ MI+G A +G+ AI F KM Q G++P +++ +L+ACSH GLV+
Sbjct: 333 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVE 392
Query: 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGA 380
EG+ YF +M V ++P +EHYGCMVD+LGR+GL++EA I NMP +P+ VI ++ LGA
Sbjct: 393 EGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGA 452
Query: 381 CRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKV 440
CR G V + + +L+ + P YV +++ + GNW +E+ + + +K + K
Sbjct: 453 CRMQGNV-EMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKD 511
Query: 441 PGCSWVKVNDGSAEEMSKE 459
PGCS + + DG E E
Sbjct: 512 PGCSLIDI-DGVLHEFVVE 529
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/450 (38%), Positives = 267/450 (59%), Gaps = 15/450 (3%)
Query: 3 SRHIETLI--QLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSIS--LHFTRSLF 57
SR + LI +L ++ HL Q+H +SL +++ IIS + ++SLS++ L F R+L
Sbjct: 11 SRKHQCLIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLL 70
Query: 58 NNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLI 117
+ + P +N L R Y+ + +ESI ++ EM + G++P+ T+PF++KAC L +
Sbjct: 71 LHSSDSTPS-TWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGL 129
Query: 118 GIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGF 177
G + + K G D D Y+GN L+ +Y CK+ A+ VF+EM R+VVSW+S++
Sbjct: 130 TAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTAL 189
Query: 178 VACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDV 237
V + + F M P+ T+V L+SAC N+ G+ +HS +V LEL+
Sbjct: 190 VENGKLNLVFECFCEMIGKRFCPDETTMVVLLSACGG--NLSLGKLVHSQVMVRELELNC 247
Query: 238 ALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMI-Q 296
LGTALV+MY+K G +E A VF M +KN+ +W+ MI GLA G A+ LF+KM+ +
Sbjct: 248 RLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKE 307
Query: 297 TGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIE 356
+ ++P+ ++F +L ACSH GLVD+G YF EM +++ IKP M HYG MVD+LGRAG +
Sbjct: 308 SSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAGRLN 367
Query: 357 EAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLG----KLLLKLEPELGANYVLA 412
EAY I+ MP EP+AV+ R+ L AC H D+ +G K L++LEP+ N V+
Sbjct: 368 EAYDFIKKMPFEPDAVVWRTLLSACSIHHD--EDDEGIGEKVKKRLIELEPKRSGNLVIV 425
Query: 413 ASVSSLSGNWDTAAELMVAINQKGLNKVPG 442
A+ + + W AAE+ + + + K+ G
Sbjct: 426 ANRFAEARMWAEAAEVRRVMKETKMKKIAG 455
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 305 bits (782), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 169/461 (36%), Positives = 263/461 (57%), Gaps = 21/461 (4%)
Query: 6 IETLIQLSKT-----VHHLHQLHTLFLKTSLDHNTCIISR---FILTSLS--ISLHFTRS 55
+E I L +T + L Q+H ++ + + + + F L SL + +
Sbjct: 15 VEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHK 74
Query: 56 LFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNFTYPFVVKACGRC 114
+F+ + +F +NTLIR YA+ SI + L+ EM +GL PD TYPF++KA
Sbjct: 75 VFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTM 134
Query: 115 LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMI 174
+ +G ++HS++ + G S Y+ N+LL +YA C ++ A VF++MP +D+V+W+S+I
Sbjct: 135 ADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVI 194
Query: 175 AGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE 234
GF P +AL ++ M P+ T+VSL+SAC + + G+ +H Y + GL
Sbjct: 195 NGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT 254
Query: 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKM 294
++ L+++Y++CG VE+A +F+ M +KN SWT +I GLA NG G AI LF M
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 314
Query: 295 IQT-GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353
T GL P I+F IL ACSH G+V EG YF M Y I+P +EH+GCMVD+L RAG
Sbjct: 315 ESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAG 374
Query: 354 LIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKL----LLKLEPELGANY 409
+++AY I++MP +PN VI R+ LGAC HG D +L + +L+LEP +Y
Sbjct: 375 QVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG-----DSDLAEFARIQILQLEPNHSGDY 429
Query: 410 VLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVND 450
VL +++ + W ++ + + G+ KVPG S V+V +
Sbjct: 430 VLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGN 470
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (770), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 155/398 (38%), Positives = 249/398 (62%), Gaps = 4/398 (1%)
Query: 54 RSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR 113
+ LF+ +PV + ++N +I YA+T E+++LF +M+KT +RPD T VV AC +
Sbjct: 220 QKLFDEIPVKD-VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278
Query: 114 CLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSM 173
I +G VH I G S+ I N L+ +Y+ C E++ A +FE +P +DV+SW+++
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338
Query: 174 IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSY--AVVN 231
I G+ + +AL +F M + E+PN VT++S++ AC L + G IH Y +
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398
Query: 232 GLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLF 291
G+ +L T+L++MY+KCG +E A +VFN + K+L SW MI G A +GR + + LF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR 351
++M + G++PD I+F +LSACSH G++D G++ F M + Y + P +EHYGCM+D+LG
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518
Query: 352 AGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVL 411
+GL +EA +I M EP+ VI S L AC+ HG V L ++ + L+K+EPE +YVL
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNV-ELGESFAENLIKIEPENPGSYVL 577
Query: 412 AASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVN 449
+++ + +G W+ A+ +N KG+ KVPGCS ++++
Sbjct: 578 LSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/459 (35%), Positives = 267/459 (58%), Gaps = 8/459 (1%)
Query: 9 LIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFIL-----TSLSISLHFTRSLFNNLPVT 63
L++ + Q+H F+K SL +++ + +L + S+++ S+F +
Sbjct: 36 LLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGID-D 94
Query: 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSV 123
P F +NT+IR Y E++ ++EM++ G PDNFTYP ++KAC R I G +
Sbjct: 95 PCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQI 154
Query: 124 HSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSP 183
H +FK+GL++D ++ N+L+ MY C E++++ AVFE++ + SWSSM++
Sbjct: 155 HGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMW 214
Query: 184 SDALKVFHRM-KLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTA 242
S+ L +F M N +VS + AC + + G SIH + + N EL++ + T+
Sbjct: 215 SECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTS 274
Query: 243 LVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD 302
LV+MY KCG ++KA +F M ++N +++ MISGLA +G G A+ +F+KMI+ GL+PD
Sbjct: 275 LVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPD 334
Query: 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHII 362
+ + ++L+ACSH GLV EG+ F EM + ++PT EHYGC+VD+LGRAGL+EEA I
Sbjct: 335 HVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETI 394
Query: 363 RNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNW 422
+++P E N VI R+FL CR Q + L + LLKL +Y+L +++ S W
Sbjct: 395 QSIPIEKNDVIWRTFLSQCRVR-QNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMW 453
Query: 423 DTAAELMVAINQKGLNKVPGCSWVKVNDGSAEEMSKETA 461
D A I KGL + PG S V++ + +S++ +
Sbjct: 454 DDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRS 492
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/436 (36%), Positives = 247/436 (56%), Gaps = 9/436 (2%)
Query: 21 QLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKT 79
++H L D + + ++ I + S S+ + R +F+ ++ +N L RA
Sbjct: 98 RVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTR-KRTIYVWNALFRALTLA 156
Query: 80 SCSIESIKLFDEMLKTGLRPDNFTYPFVVKAC--GRCLL--IGIGGSVHSLIFKVGLDSD 135
E + L+ +M + G+ D FTY +V+KAC C + + G +H+ + + G S
Sbjct: 157 GHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSH 216
Query: 136 KYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRM-- 193
YI TL+ MYA +D A VF MPVR+VVSWS+MIA + +AL+ F M
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMR 276
Query: 194 KLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHV 253
+ + SPNSVT+VS++ AC SL + G+ IH Y + GL+ + + +ALV MY +CG +
Sbjct: 277 ETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKL 336
Query: 254 EKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC 313
E +VF+ M ++++ SW +IS +G G AI +F +M+ G P ++F ++L AC
Sbjct: 337 EVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGAC 396
Query: 314 SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVI 373
SH GLV+EGK F+ M R + IKP +EHY CMVD+LGRA ++EA ++++M TEP +
Sbjct: 397 SHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKV 456
Query: 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433
S LG+CR HG V L + + L LEP+ NYVL A + + + WD + +
Sbjct: 457 WGSLLGSCRIHGNV-ELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLE 515
Query: 434 QKGLNKVPGCSWVKVN 449
+GL K+PG W++V
Sbjct: 516 HRGLQKLPGRCWMEVR 531
|
Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 141/397 (35%), Positives = 240/397 (60%), Gaps = 2/397 (0%)
Query: 54 RSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR 113
R +F +P + +YNT+I YA++ +++++ EM T L+PD+FT V+
Sbjct: 196 RRVFEVMP-RKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSE 254
Query: 114 CLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSM 173
+ + G +H + + G+DSD YIG++L+ MYA I+ ++ VF + RD +SW+S+
Sbjct: 255 YVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSL 314
Query: 174 IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGL 233
+AG+V ++AL++F +M A P +V S++ AC L + G+ +H Y + G
Sbjct: 315 VAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGF 374
Query: 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAK 293
++ + +ALV+MYSKCG+++ A K+F+ M + SWT +I G A +G G+ A+SLF +
Sbjct: 375 GSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEE 434
Query: 294 MIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353
M + G+KP+ ++F A+L+ACSH+GLVDE YF+ M +VY + +EHY + D+LGRAG
Sbjct: 435 MKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAG 494
Query: 354 LIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413
+EEAY+ I M EP + + L +C H + L L + + + + ++ E YVL
Sbjct: 495 KLEEAYNFISKMCVEPTGSVWSTLLSSCSVH-KNLELAEKVAEKIFTVDSENMGAYVLMC 553
Query: 414 SVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVND 450
++ + +G W A+L + + +KGL K P CSW+++ +
Sbjct: 554 NMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKN 590
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/480 (33%), Positives = 262/480 (54%), Gaps = 41/480 (8%)
Query: 9 LIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSIS--------LHFTRSLFNNL 60
L+Q + L +H L+T L + + SR + + S L + +F+ +
Sbjct: 18 LLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQI 77
Query: 61 PVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIG 120
P LF +N LIR ++ + ++ + +MLK+ + PDN T+PF++KA + +G
Sbjct: 78 Q-NPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVG 136
Query: 121 GSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVAC 180
HS I + G +D Y+ N+L+ MYA C I A +F +M RDVVSW+SM+AG+ C
Sbjct: 137 EQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKC 196
Query: 181 DSPSDALKVF----HR---------------------------MKLANESPNSVTLVSLV 209
+A ++F HR MK N +VS++
Sbjct: 197 GMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVI 256
Query: 210 SACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ 269
S+C L + GE + Y V + + +++ LGTALV+M+ +CG +EKA VF + E +
Sbjct: 257 SSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSL 316
Query: 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEM 329
SW+ +I GLA +G + A+ F++MI G P ++F+A+LSACSH GLV++G ++ M
Sbjct: 317 SWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENM 376
Query: 330 ARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLY 389
+ + I+P +EHYGC+VDMLGRAG + EA + I M +PNA IL + LGAC+ +
Sbjct: 377 KKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNT-E 435
Query: 390 LDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVN 449
+ + +G +L+K++PE YVL +++ + +G WD L + +K + K PG S ++++
Sbjct: 436 VAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEID 495
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 165/461 (35%), Positives = 265/461 (57%), Gaps = 12/461 (2%)
Query: 5 HIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCI----ISRFILTSLSISLHFTRSLFNNL 60
H+ +LI S HL Q+H L L+TSL N+ + +SR L+ + ++++ +F+
Sbjct: 13 HLLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQ- 71
Query: 61 PVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-FTYPFVVKACGRCLLIGI 119
+ P L NT+IRA++ + E +LF + + P N + F +K C + +
Sbjct: 72 RLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLG 131
Query: 120 GGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVA 179
G +H IF G SD + TL+ +Y+ C+ A VF+E+P RD VSW+ + + ++
Sbjct: 132 GLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLR 191
Query: 180 CDSPSDALKVFHRMKLANE---SPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELD 236
D L +F +MK + P+ VT + + AC +L + G+ +H + NGL
Sbjct: 192 NKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGA 251
Query: 237 VALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296
+ L LV MYS+CG ++KA++VF MRE+N+ SWT +ISGLA NG G AI F +M++
Sbjct: 252 LNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLK 311
Query: 297 TGLKPDSISFSAILSACSHLGLVDEGKNYFDEM-ARVYNIKPTMEHYGCMVDMLGRAGLI 355
G+ P+ + + +LSACSH GLV EG +FD M + + IKP + HYGC+VD+LGRA L+
Sbjct: 312 FGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLL 371
Query: 356 EEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASV 415
++AY +I++M +P++ I R+ LGACR HG V L + + L++L+ E +YVL +
Sbjct: 372 DKAYSLIKSMEMKPDSTIWRTLLGACRVHGDV-ELGERVISHLIELKAEEAGDYVLLLNT 430
Query: 416 SSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAEEM 456
S G W+ EL + +K ++ PGCS +++ G+ E
Sbjct: 431 YSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQ-GTVHEF 470
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 462 | ||||||
| 225435652 | 461 | PREDICTED: pentatricopeptide repeat-cont | 0.991 | 0.993 | 0.648 | 1e-180 | |
| 356528208 | 444 | PREDICTED: pentatricopeptide repeat-cont | 0.956 | 0.995 | 0.613 | 1e-154 | |
| 297746423 | 430 | unnamed protein product [Vitis vinifera] | 0.766 | 0.823 | 0.692 | 1e-149 | |
| 449442178 | 606 | PREDICTED: pentatricopeptide repeat-cont | 0.954 | 0.727 | 0.390 | 8e-94 | |
| 356562016 | 705 | PREDICTED: pentatricopeptide repeat-cont | 0.928 | 0.608 | 0.391 | 2e-92 | |
| 225425100 | 622 | PREDICTED: pentatricopeptide repeat-cont | 0.961 | 0.713 | 0.376 | 5e-92 | |
| 297740547 | 506 | unnamed protein product [Vitis vinifera] | 0.965 | 0.881 | 0.367 | 7e-92 | |
| 296088765 | 595 | unnamed protein product [Vitis vinifera] | 0.965 | 0.749 | 0.375 | 1e-91 | |
| 147832325 | 622 | hypothetical protein VITISV_030261 [Viti | 0.961 | 0.713 | 0.376 | 2e-91 | |
| 225435834 | 576 | PREDICTED: pentatricopeptide repeat-cont | 0.956 | 0.767 | 0.367 | 8e-91 |
| >gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 297/458 (64%), Positives = 371/458 (81%)
Query: 2 ISRHIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLP 61
+SR I+ L+Q SKT HL QLH+L LKT+ DHN +IS+FI + S+S+ F R +F+ LP
Sbjct: 1 MSRQIQILLQRSKTTTHLLQLHSLILKTAKDHNPDLISQFIFSISSVSIEFARLVFDRLP 60
Query: 62 VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGG 121
+ P+FA+N++IRAY K+S IE++KLF +M + GL+PDNFTYPFVVKACGR L++G GG
Sbjct: 61 IRAPIFAWNSIIRAYTKSSVPIEAVKLFSQMQRVGLKPDNFTYPFVVKACGRSLVVGAGG 120
Query: 122 SVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACD 181
++HS+I K G DSD+Y+GNTLLRMYA + +A+ VF EM VRDVVSWSSMIAG+VAC+
Sbjct: 121 AMHSIIVKAGFDSDRYVGNTLLRMYANLNAVGLARRVFNEMTVRDVVSWSSMIAGYVACN 180
Query: 182 SPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGT 241
+DAL VF M LANE PNSVTLVSL+SACT L+N+ GESIHSY +VN + LDVALGT
Sbjct: 181 CQADALMVFRHMMLANEKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCIGLDVALGT 240
Query: 242 ALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP 301
A++EMYSKCGH+EKA KVFN + EKNLQSWTIMISGLAD+ G AISLF +M QTGL+P
Sbjct: 241 AILEMYSKCGHIEKALKVFNSLTEKNLQSWTIMISGLADHSHGEDAISLFTQMEQTGLQP 300
Query: 302 DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHI 361
DS+SFS ILSACSHLGLVDEG+ +F +M ++YNI+PTMEHYGCMVDM RAG+IEEAY I
Sbjct: 301 DSMSFSEILSACSHLGLVDEGQTFFSQMVKIYNIRPTMEHYGCMVDMFARAGMIEEAYEI 360
Query: 362 IRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGN 421
I+NMP EPN+VILRSF+GACRN G+V D+NL +LLL++EP+LGANYVLA+ VSSLSG
Sbjct: 361 IKNMPMEPNSVILRSFIGACRNDGRVFGFDENLRRLLLEIEPDLGANYVLASGVSSLSGC 420
Query: 422 WDTAAELMVAINQKGLNKVPGCSWVKVNDGSAEEMSKE 459
W+ AA+L V++ +KGL KVPG S V+V+ EE +E
Sbjct: 421 WNEAADLRVSMKEKGLKKVPGWSRVEVSGSHTEETIEE 458
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528208|ref|XP_003532697.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 273/445 (61%), Positives = 328/445 (73%), Gaps = 3/445 (0%)
Query: 6 IETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPP 65
I TLI SKT+ L QLH LFLKTSLDH+ IS+F+L S +ISL F S F++LP PP
Sbjct: 3 ICTLIHRSKTLTQLLQLHALFLKTSLDHHPFFISQFLLQSSTISLPFAASFFHSLPTLPP 62
Query: 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125
LFA+NTLIRA+A T S+ LF + + L PDNFTYPFV+KAC R + +GG++HS
Sbjct: 63 LFAWNTLIRAFAATPTPFHSLTLFRLLQTSPLNPDNFTYPFVLKACARSSSLPLGGTLHS 122
Query: 126 LIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSD 185
L K G S +++GN LL MYA C + A+ VF+EM RDVVSWSS+IA +VA +SP D
Sbjct: 123 LTLKTGFRSHRHVGNALLNMYAECYAVMSARMVFDEMTDRDVVSWSSLIAAYVASNSPLD 182
Query: 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245
A VF M + NE PNSVTLVSL+SACT +N+R GESIHSY NG+E+DVALGTAL E
Sbjct: 183 AFYVFREMGMENEQPNSVTLVSLLSACTKTLNLRVGESIHSYVTSNGIEMDVALGTALFE 242
Query: 246 MYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSIS 305
MY+KCG ++KA VFN M +KNLQS TIMIS LAD+GR ISLF +M GL+ DS+S
Sbjct: 243 MYAKCGEIDKALLVFNSMGDKNLQSCTIMISALADHGREKDVISLFTQMEDGGLRLDSLS 302
Query: 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365
F+ ILSACSH+GLVDEGK YFD M RVY IKP++EHYGCMVD+LGRAG I+EAY II+ M
Sbjct: 303 FAVILSACSHMGLVDEGKMYFDRMVRVYGIKPSVEHYGCMVDLLGRAGFIQEAYDIIKGM 362
Query: 366 PTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTA 425
P EPN VILRSFLGACRNHG V LDD+ L +LE ELGANYVL A+V S +W A
Sbjct: 363 PMEPNDVILRSFLGACRNHGWVPSLDDD---FLSELESELGANYVLTANVFSTCASWKDA 419
Query: 426 AELMVAINQKGLNKVPGCSWVKVND 450
+L VA+ KGL KVPGCSWV+V +
Sbjct: 420 NDLRVAMKLKGLKKVPGCSWVEVQN 444
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746423|emb|CBI16479.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust.
Identities = 248/358 (69%), Positives = 300/358 (83%)
Query: 92 MLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKE 151
M + GL+PDNFTYPFVVKACGR L++G GG++HS+I K G DSD+Y+GNTLLRMYA
Sbjct: 1 MQRVGLKPDNFTYPFVVKACGRSLVVGAGGAMHSIIVKAGFDSDRYVGNTLLRMYANLNA 60
Query: 152 IDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSA 211
+ +A+ VF EM VRDVVSWSSMIAG+VAC+ +DAL VF M LANE PNSVTLVSL+SA
Sbjct: 61 VGLARRVFNEMTVRDVVSWSSMIAGYVACNCQADALMVFRHMMLANEKPNSVTLVSLLSA 120
Query: 212 CTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSW 271
CT L+N+ GESIHSY +VN + LDVALGTA++EMYSKCGH+EKA KVFN + EKNLQSW
Sbjct: 121 CTRLLNIGVGESIHSYIIVNCIGLDVALGTAILEMYSKCGHIEKALKVFNSLTEKNLQSW 180
Query: 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR 331
TIMISGLAD+ G AISLF +M QTGL+PDS+SFS ILSACSHLGLVDEG+ +F +M +
Sbjct: 181 TIMISGLADHSHGEDAISLFTQMEQTGLQPDSMSFSEILSACSHLGLVDEGQTFFSQMVK 240
Query: 332 VYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLD 391
+YNI+PTMEHYGCMVDM RAG+IEEAY II+NMP EPN+VILRSF+GACRN G+V D
Sbjct: 241 IYNIRPTMEHYGCMVDMFARAGMIEEAYEIIKNMPMEPNSVILRSFIGACRNDGRVFGFD 300
Query: 392 DNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVN 449
+NL +LLL++EP+LGANYVLA+ VSSLSG W+ AA+L V++ +KGL KVPG S V+V+
Sbjct: 301 ENLRRLLLEIEPDLGANYVLASGVSSLSGCWNEAADLRVSMKEKGLKKVPGWSRVEVS 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis sativus] gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 175/448 (39%), Positives = 278/448 (62%), Gaps = 7/448 (1%)
Query: 9 LIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPL- 66
L+Q + L Q+HT LK L +N ++++F ++SL + + S + L
Sbjct: 35 LLQACNALPKLTQIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLY 94
Query: 67 --FAYNTLIRAYAKTSCSIE-SIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSV 123
F +NTLIRAYA+T S + ++ L+ ML + P+ FTYPFV+KAC ++ +G +V
Sbjct: 95 DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTV 154
Query: 124 HSLIFKVGLDSDKYIGNTLLRMYAACKE-IDVAKAVFEEMPVRDVVSWSSMIAGFVACDS 182
H + K G D D ++ NT++ MY+ C I+ A+ VF+EMP D V+WS+MI G+
Sbjct: 155 HGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGR 214
Query: 183 PSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTA 242
++A+ +F M++A P+ +T+VS++SACT L + G+ I +Y + + V + A
Sbjct: 215 STEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNA 274
Query: 243 LVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD 302
L++M++KCG + KA K+F M EK + SWT +I G+A +GRG A LF +M +G+ PD
Sbjct: 275 LIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPD 334
Query: 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHII 362
++F +LSACSH GLV+ G+ YF M + Y + P +EHYGCMVDM R GL++EA +
Sbjct: 335 DVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFV 394
Query: 363 RNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNW 422
RNMP EPN VILR+ + ACR HG+ L + + KLL+K EP +NYVL +++ + + +W
Sbjct: 395 RNMPIEPNPVILRTLVSACRGHGE-FKLGEKITKLLMKHEPLHESNYVLLSNIYAKTLSW 453
Query: 423 DTAAELMVAINQKGLNKVPGCSWVKVND 450
+ ++ + KG+ KVPG + +++++
Sbjct: 454 EKKTKIREVMEVKGMKKVPGSTMIEIDN 481
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/442 (39%), Positives = 278/442 (62%), Gaps = 13/442 (2%)
Query: 21 QLHTLFLKTSLDHNTCIISRFILTSLSI-SLHFTRS-LFNNLPVTPP----LFAYNTLIR 74
Q+H+L LK L HN ++++F TS ++H+ S LF N TPP F +NTLIR
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199
Query: 75 AYAKTSCS-IESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLD 133
A+A+T+ S +++ ++ M + + P+ FT+PFV+KAC + + +GG+VH+ + K G +
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFE 259
Query: 134 SDKYIGNTLLRMYAACKEIDV-----AKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALK 188
D ++ NTL+ MY C + AK VF+E PV+D V+WS+MI G+ + + A+
Sbjct: 260 EDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVT 319
Query: 189 VFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYS 248
+F M++ P+ +T+VS++SAC L + G+ + SY + V L AL++M++
Sbjct: 320 LFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFA 379
Query: 249 KCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSA 308
KCG V++A KVF M+ + + SWT MI GLA +GRG A+ +F +M++ G+ PD ++F
Sbjct: 380 KCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIG 439
Query: 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE 368
+LSACSH GLVD+G YF+ M +++I P +EHYGCMVDML RAG + EA +R MP E
Sbjct: 440 VLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVE 499
Query: 369 PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAEL 428
PN VI RS + AC G+ L L +++ K L++ EP +NYVL +++ + W+ ++
Sbjct: 500 PNQVIWRSIVTACHARGE-LKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKV 558
Query: 429 MVAINQKGLNKVPGCSWVKVND 450
++ KG+ K+PG + +++N+
Sbjct: 559 REMMDVKGMRKIPGSTMIEMNN 580
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 181/481 (37%), Positives = 280/481 (58%), Gaps = 37/481 (7%)
Query: 9 LIQLSKTVHHLHQLHTLFLKTSLDHNTCIISR---FILTSLSISLHFTRSLFNNLPVTPP 65
L+Q + L Q+H LKT L + S+ F + S SL + R++F+ + P
Sbjct: 24 LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRI-FRPN 82
Query: 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125
F +NT+IR Y+ + E++ L+ ML + + +T+PF++KAC + +H+
Sbjct: 83 TFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHA 142
Query: 126 LIFKVGLDSDKYIGNTLLRMYAA-------------------------------CKEIDV 154
I K+G S+ Y N+LL +Y+ C EI++
Sbjct: 143 HIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEM 202
Query: 155 AKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTS 214
A +F MP R+++SW+SMI+G V P +AL +FHRM+ A ++V LVS + AC
Sbjct: 203 AYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACAD 262
Query: 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIM 274
L + G+ IH+Y + +E+D LG L++MY+KCG +E+A +VF M EK + WT M
Sbjct: 263 LGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAM 322
Query: 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN 334
ISG A +GRG A+ F KM G++P+ ++F+ IL+ACSH GLV E K F+ M R++
Sbjct: 323 ISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHG 382
Query: 335 IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNL 394
KP++EHYGCMVD+LGRAGL++EA +I NMP +PNA I + L AC HG L L +
Sbjct: 383 FKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN-LELGKQI 441
Query: 395 GKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAE 454
GK+L++++P G Y+ AS+ + +G W+ AA + + ++G++K+PGCS + VN G+A
Sbjct: 442 GKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVN-GTAH 500
Query: 455 E 455
E
Sbjct: 501 E 501
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 179/487 (36%), Positives = 286/487 (58%), Gaps = 41/487 (8%)
Query: 6 IETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLH-----FTRSLFNNL 60
I + +++ ++ LHQ H LK+ L H+T SR I S+S + H + S+F+ +
Sbjct: 10 ILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLI-ASVSTNSHAQAIPYAHSIFSRI 68
Query: 61 PVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIG 120
P P + +NT+IRAYA + ++ +F +ML + PD +T+ F +K+CG + G
Sbjct: 69 P-NPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEG 127
Query: 121 GSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAK------------------------ 156
+H + K GL D +I NTL+ +YA+C I+ A+
Sbjct: 128 RQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAER 187
Query: 157 --------AVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSL 208
VF E PV++VVSW++MI G+ S+ L +F M+ A P++ TLVS+
Sbjct: 188 GLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSV 247
Query: 209 VSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL 268
+SAC + + GE +H+Y NG+ +D + TALV+MYSKCG +EKA +VFN K++
Sbjct: 248 LSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDI 307
Query: 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDE 328
+W +ISGL+ +G G +A+ +F++M+ G KP+ ++F +LSACS GL+DEG+ F+
Sbjct: 308 STWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNL 367
Query: 329 MARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVL 388
M V+ I+PT+EHYGCMVD+LGR GL+EEA +++ MP + +V+ S LGACRNHG V
Sbjct: 368 MVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNV- 426
Query: 389 YLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKV 448
L + + + LL+L P+ +++V +++ + G W E+ + +G+ K PGCS ++V
Sbjct: 427 ELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEV 486
Query: 449 NDGSAEE 455
DG+ E
Sbjct: 487 -DGTVYE 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 195/520 (37%), Positives = 289/520 (55%), Gaps = 74/520 (14%)
Query: 10 IQLSKTVHHLHQLHTLFLKT--SLDHNTCIISRF---ILTSLSISLHFTRSLFNNLPVTP 64
+Q K++ L Q+H +KT S D I +R SL I + SL L TP
Sbjct: 44 LQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLR-TP 102
Query: 65 PLFAYNTLIRAYAKTSC-SIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSV 123
L YN +IR A ++ SIE + ++ +ML G+ PDN+T PFV+KAC + G V
Sbjct: 103 NLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEV 162
Query: 124 HSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFV----- 178
H K+GL SD Y+ NTL+RMYA C I A+ VF+ P RD+VSW++MI G+V
Sbjct: 163 HGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFA 222
Query: 179 -----------------------------ACDSPSDALKVFHRMKLAN------------ 197
C + A KVF M + N
Sbjct: 223 REGVGLYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLA 282
Query: 198 ------ES-------------PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVA 238
ES P+ VTLV+++++C +L + G+ +H+Y N + D
Sbjct: 283 QKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGF 342
Query: 239 LGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTG 298
+G ALV+MY+KCG +++A VF M K++ S+T MI GLA +G+G A+ LF++M + G
Sbjct: 343 IGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMG 402
Query: 299 LKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEA 358
++PD ++F +L+ACSH+GLV+EG+ YF++M+ +YN++P +EHYGCMVD+LGRAGLI EA
Sbjct: 403 IEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEA 462
Query: 359 YHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418
IRNMP EP+A +L + LGAC+ HG+V L +++ K + K+EP YVL +++ S
Sbjct: 463 EEFIRNMPIEPDAFVLGALLGACKIHGKV-ELGESVMKKIEKIEPRKDGAYVLMSNIYSS 521
Query: 419 SGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAEEMSK 458
+ W A +L + ++ L K PGCS +++ DG E K
Sbjct: 522 ANRWRDALKLRKTMKERNLEKTPGCSSIEL-DGVIHEFQK 560
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 181/481 (37%), Positives = 279/481 (58%), Gaps = 37/481 (7%)
Query: 9 LIQLSKTVHHLHQLHTLFLKTSLDHNTCIISR---FILTSLSISLHFTRSLFNNLPVTPP 65
L+Q + L Q+H LKT L + S+ F + S SL + R++F+ + P
Sbjct: 24 LLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRI-FRPN 82
Query: 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125
F +NT+IR Y+ + E++ L+ ML + + +T+PF++KAC +H+
Sbjct: 83 TFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHA 142
Query: 126 LIFKVGLDSDKYIGNTLLRMYAA-------------------------------CKEIDV 154
I K+G S+ Y N+LL +Y+ C EI++
Sbjct: 143 HIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEM 202
Query: 155 AKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTS 214
A +F MP R+++SW+SMI+G V P +AL +FHRM+ A ++V LVS + AC
Sbjct: 203 AYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACAD 262
Query: 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIM 274
L + G+ IH+Y + +E+D LG L++MY+KCG +E+A +VF M EK + WT M
Sbjct: 263 LGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAM 322
Query: 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN 334
ISG A +GRG A+ F KM G++P+ ++F+ IL+ACSH GLV E K F+ M R++
Sbjct: 323 ISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHG 382
Query: 335 IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNL 394
KP++EHYGCMVD+LGRAGL++EA +I NMP +PNA I + L AC HG L L +
Sbjct: 383 FKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN-LELGKQI 441
Query: 395 GKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAE 454
GK+L++++P G Y+ AS+ + +G W+ AA + + ++G++K+PGCS + VN G+A
Sbjct: 442 GKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVN-GTAH 500
Query: 455 E 455
E
Sbjct: 501 E 501
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 340 bits (872), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 278/484 (57%), Gaps = 42/484 (8%)
Query: 3 SRHIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISL-HFTRSLFNNLP 61
S H+ +L++ + HLHQ H L LD + ++SRFI S+ H++ S+F +
Sbjct: 41 SYHLLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTH-K 99
Query: 62 VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGG 121
P ++ YNT+I+A + + E+I L++ +L + LR D ++ PFV+KA R L I +G
Sbjct: 100 TRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGR 159
Query: 122 SVHSLIFKVGLDSDKYIGNTLLRMYAACK------------------------------- 150
+H GL SD ++ L++MY++C
Sbjct: 160 QIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVG 219
Query: 151 EIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVS 210
++D A+ +FE MP R+V+SW+++IAG+ D P++A+ +F RM+L P+ + +++ +S
Sbjct: 220 DVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALS 279
Query: 211 ACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQS 270
AC L + GE IH+Y +GL V L AL++MY+KCG +EKA +VF M K++ +
Sbjct: 280 ACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVIT 339
Query: 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMA 330
WT MI GLA +G G A+ +F+ M + +KP+ I+F AILSAC H+GLV+ G+ YF M
Sbjct: 340 WTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMG 399
Query: 331 RVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYL 390
Y IKP ++HYGCM+D+LGRAG ++EA ++R MP E NA I S L A R HG
Sbjct: 400 TKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHG----- 454
Query: 391 DDNLGKL----LLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWV 446
D LGK L+K+EP NY L +++ + W+ A + + G+ K+PG S +
Sbjct: 455 DAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCI 514
Query: 447 KVND 450
+VN+
Sbjct: 515 EVNN 518
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 462 | ||||||
| TAIR|locus:2034456 | 606 | AT1G31920 [Arabidopsis thalian | 0.971 | 0.740 | 0.347 | 9.3e-75 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.852 | 0.531 | 0.374 | 8.4e-74 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.941 | 0.731 | 0.358 | 2.2e-73 | |
| TAIR|locus:2040565 | 501 | AT2G36730 [Arabidopsis thalian | 0.965 | 0.890 | 0.366 | 9.6e-73 | |
| TAIR|locus:2079187 | 591 | AT3G47530 "AT3G47530" [Arabido | 0.965 | 0.754 | 0.357 | 2.9e-71 | |
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.952 | 0.729 | 0.316 | 1.8e-69 | |
| TAIR|locus:2057574 | 583 | AT2G33760 [Arabidopsis thalian | 0.956 | 0.758 | 0.320 | 6.3e-69 | |
| TAIR|locus:2121055 | 559 | AT4G38010 "AT4G38010" [Arabido | 0.839 | 0.694 | 0.350 | 8e-69 | |
| TAIR|locus:2025946 | 638 | CRR28 "CHLORORESPIRATORY REDUC | 0.984 | 0.713 | 0.338 | 1e-68 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.926 | 0.480 | 0.346 | 1.3e-68 |
| TAIR|locus:2034456 AT1G31920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 159/457 (34%), Positives = 259/457 (56%)
Query: 9 LIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSIS-----LHFTRSLFNNLPVT 63
L++ + Q+H F+K SL +++ + +L + S +++ S+F +
Sbjct: 36 LLKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGID-D 94
Query: 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSV 123
P F +NT+IR Y E++ ++EM++ G PDNFTYP ++KAC R I G +
Sbjct: 95 PCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQI 154
Query: 124 HSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSP 183
H +FK+GL++D ++ N+L+ MY C E++++ AVFE++ + SWSSM++
Sbjct: 155 HGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMW 214
Query: 184 SDALKVFHRM-KLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTA 242
S+ L +F M N +VS + AC + + G SIH + + N EL++ + T+
Sbjct: 215 SECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTS 274
Query: 243 LVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD 302
LV+MY KCG ++KA +F M ++N +++ MISGLA +G G A+ +F+KMI+ GL+PD
Sbjct: 275 LVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPD 334
Query: 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHII 362
+ + ++L+ACSH GLV EG+ F EM + ++PT EHYGC+VD+LGRAGL+EEA I
Sbjct: 335 HVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETI 394
Query: 363 RNMPTEPNAVILRSFLGACRNHGQVXXXXXXXXXXXXXXXXXXXANYVLAASVSSLSGNW 422
+++P E N VI R+FL CR + +Y+L +++ S W
Sbjct: 395 QSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNP-GDYLLISNLYSQGQMW 453
Query: 423 DTAAELMVAINQKGLNKVPGCSWVKVNDGSAEEMSKE 459
D A I KGL + PG S V++ + +S++
Sbjct: 454 DDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQD 490
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 149/398 (37%), Positives = 238/398 (59%)
Query: 54 RSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR 113
+ LF+ +PV + ++N +I YA+T E+++LF +M+KT +RPD T VV AC +
Sbjct: 220 QKLFDEIPVKD-VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278
Query: 114 CLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSM 173
I +G VH I G S+ I N L+ +Y+ C E++ A +FE +P +DV+SW+++
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338
Query: 174 IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAV--VN 231
I G+ + +AL +F M + E+PN VT++S++ AC L + G IH Y +
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398
Query: 232 GLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLF 291
G+ +L T+L++MY+KCG +E A +VFN + K+L SW MI G A +GR + + LF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR 351
++M + G++PD I+F +LSACSH G++D G++ F M + Y + P +EHYGCM+D+LG
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518
Query: 352 AGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVXXXXXXXXXXXXXXXXXXXANYVL 411
+GL +EA +I M EP+ VI S L AC+ HG V +YVL
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENP-GSYVL 577
Query: 412 AASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVN 449
+++ + +G W+ A+ +N KG+ KVPGCS ++++
Sbjct: 578 LSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 159/443 (35%), Positives = 248/443 (55%)
Query: 15 TVHHLHQLHTLFLKTSLDHNTCIISR---FILTSLSIS--LHFTRSLFNNLPVTPPLFAY 69
++ L Q+H ++ + + + + F L SL + + +F+ + +F +
Sbjct: 29 SITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIW 88
Query: 70 NTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNFTYPFVVKACGRCLLIGIGGSVHSLIF 128
NTLIR YA+ SI + L+ EM +GL PD TYPF++KA + +G ++HS++
Sbjct: 89 NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148
Query: 129 KVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALK 188
+ G S Y+ N+LL +YA C ++ A VF++MP +D+V+W+S+I GF P +AL
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208
Query: 189 VFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYS 248
++ M P+ T+VSL+SAC + + G+ +H Y + GL ++ L+++Y+
Sbjct: 209 LYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268
Query: 249 KCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQT-GLKPDSISFS 307
+CG VE+A +F+ M +KN SWT +I GLA NG G AI LF M T GL P I+F
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328
Query: 308 AILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT 367
IL ACSH G+V EG YF M Y I+P +EH+GCMVD+L RAG +++AY I++MP
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPM 388
Query: 368 EPNAVILRSFLGACRNHGQVXXXXXXXXXXXXXXXXXXXANYVLAASVSSLSGNWDTAAE 427
+PN VI R+ LGAC HG +YVL +++ + W +
Sbjct: 389 QPNVVIWRTLLGACTVHGD-SDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQK 447
Query: 428 LMVAINQKGLNKVPGCSWVKVND 450
+ + + G+ KVPG S V+V +
Sbjct: 448 IRKQMLRDGVKKVPGHSLVEVGN 470
|
|
| TAIR|locus:2040565 AT2G36730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 168/458 (36%), Positives = 261/458 (56%)
Query: 3 SRHIETLI--QLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSIS--LHFTRSLF 57
SR + LI +L ++ HL Q+H +SL +++ IIS + ++SLS++ L F R+L
Sbjct: 11 SRKHQCLIFLKLCSSIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLL 70
Query: 58 NNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLI 117
+ + P +N L R Y+ + +ESI ++ EM + G++P+ T+PF++KAC L +
Sbjct: 71 LHSSDSTPS-TWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGL 129
Query: 118 GIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGF 177
G + + K G D D Y+GN L+ +Y CK+ A+ VF+EM R+VVSW+S++
Sbjct: 130 TAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTAL 189
Query: 178 VACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDV 237
V + + F M P+ T+V L+SAC N+ G+ +HS +V LEL+
Sbjct: 190 VENGKLNLVFECFCEMIGKRFCPDETTMVVLLSACGG--NLSLGKLVHSQVMVRELELNC 247
Query: 238 ALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMI-Q 296
LGTALV+MY+K G +E A VF M +KN+ +W+ MI GLA G A+ LF+KM+ +
Sbjct: 248 RLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKE 307
Query: 297 TGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIE 356
+ ++P+ ++F +L ACSH GLVD+G YF EM +++ IKP M HYG MVD+LGRAG +
Sbjct: 308 SSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAGRLN 367
Query: 357 EAYHIIRNMPTEPNAVILRSFLGACRNHGQVXXXXXXXXXXXXXXXXX--XXANYVLAAS 414
EAY I+ MP EP+AV+ R+ L AC H N V+ A+
Sbjct: 368 EAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSGNLVIVAN 427
Query: 415 VSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGS 452
+ + W AAE+ + + + K+ G S +++ GS
Sbjct: 428 RFAEARMWAEAAEVRRVMKETKMKKIAGESCLELG-GS 464
|
|
| TAIR|locus:2079187 AT3G47530 "AT3G47530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
Identities = 165/462 (35%), Positives = 259/462 (56%)
Query: 5 HIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISL-----HFTRSLFNN 59
H+ +LI S HL Q+H L L+TSL N+ + F L+ L++SL +++ +F+
Sbjct: 13 HLLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHF-LSRLALSLIPRDINYSCRVFSQ 71
Query: 60 LPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-FTYPFVVKACGRCL-LI 117
+ P L NT+IRA++ + E +LF + + P N + F +K C + L+
Sbjct: 72 R-LNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLL 130
Query: 118 GIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGF 177
G G +H IF G SD + TL+ +Y+ C+ A VF+E+P RD VSW+ + + +
Sbjct: 131 G-GLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCY 189
Query: 178 VACDSPSDALKVFHRMKLANES---PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE 234
+ D L +F +MK + P+ VT + + AC +L + G+ +H + NGL
Sbjct: 190 LRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLS 249
Query: 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKM 294
+ L LV MYS+CG ++KA++VF MRE+N+ SWT +ISGLA NG G AI F +M
Sbjct: 250 GALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEM 309
Query: 295 IQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEM-ARVYNIKPTMEHYGCMVDMLGRAG 353
++ G+ P+ + + +LSACSH GLV EG +FD M + + IKP + HYGC+VD+LGRA
Sbjct: 310 LKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRAR 369
Query: 354 LIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVXXXXXXXXXXXXXXXXXXXANYVLAA 413
L+++AY +I++M +P++ I R+ LGACR HG V +YVL
Sbjct: 370 LLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEA-GDYVLLL 428
Query: 414 SVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAEE 455
+ S G W+ EL + +K ++ PGCS +++ G+ E
Sbjct: 429 NTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQ-GTVHE 469
|
|
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 141/445 (31%), Positives = 250/445 (56%)
Query: 9 LIQLSKTVHHLHQLHTLFLKTSLDHNTCI--ISRFILTS-LSISLHFTRSLFNNLPVTPP 65
LI ++ L Q+ +K+ ++ + + + F S S+ + R LF + P
Sbjct: 35 LISKCNSLRELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHLFEAMS-EPD 93
Query: 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125
+ +N++ R Y++ + +E LF E+L+ G+ PDN+T+P ++KAC + G +H
Sbjct: 94 IVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHC 153
Query: 126 LIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSD 185
L K+GLD + Y+ TL+ MY C+++D A+ VF+ + VV +++MI G+ + P++
Sbjct: 154 LSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNE 213
Query: 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245
AL +F M+ PN +TL+S++S+C L ++ G+ IH YA + V + TAL++
Sbjct: 214 ALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALID 273
Query: 246 MYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSIS 305
M++KCG ++ A +F MR K+ Q+W+ MI A++G+ ++ +F +M ++PD I+
Sbjct: 274 MFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEIT 333
Query: 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365
F +L+ACSH G V+EG+ YF +M + I P+++HYG MVD+L RAG +E+AY I +
Sbjct: 334 FLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKL 393
Query: 366 PTEPNAVILRSFLGACRNHGQVXXXXXXXXXXXXXXXXXXXANYVLAASVSSLSGNWDTA 425
P P ++ R L AC +H + +YV+ +++ + + W+
Sbjct: 394 PISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHG-GDYVILSNLYARNKKWEYV 452
Query: 426 AELMVAINQKGLNKVPGCSWVKVND 450
L + + KVPGCS ++VN+
Sbjct: 453 DSLRKVMKDRKAVKVPGCSSIEVNN 477
|
|
| TAIR|locus:2057574 AT2G33760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
Identities = 144/449 (32%), Positives = 249/449 (55%)
Query: 7 ETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSI-SLHFTRSLFNNLPVTPP 65
E +++ V L Q+H + T + ++++ I + S ++ +T LF ++P+ P
Sbjct: 13 EAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPL-PD 71
Query: 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125
F +N++I++ +K + + + ML + + P N+T+ V+K+C + IG VH
Sbjct: 72 DFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHC 131
Query: 126 LIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSD 185
G D Y+ L+ Y+ C +++ A+ VF+ MP + +V+W+S+++GF +
Sbjct: 132 HAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADE 191
Query: 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245
A++VF++M+ + P+S T VSL+SAC V G +H Y + GL+L+V LGTAL+
Sbjct: 192 AIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALIN 251
Query: 246 MYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQT-GLKPDSI 304
+YS+CG V KA +VF+ M+E N+ +WT MIS +G G A+ LF KM G P+++
Sbjct: 252 LYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNV 311
Query: 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRN 364
+F A+LSAC+H GLV+EG++ + M + Y + P +EH+ CMVDMLGRAG ++EAY I
Sbjct: 312 TFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQ 371
Query: 365 MPTEPNAV---ILRSFLGACRNHGQVXXXXXXXXXXXXXXXXXXXANYVLAASVSSLSGN 421
+ A + + LGAC+ H ++V+ +++ +LSG
Sbjct: 372 LDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNP-GHHVMLSNIYALSGK 430
Query: 422 WDTAAELMVAINQKGLNKVPGCSWVKVND 450
D + + + + L K G S ++V +
Sbjct: 431 TDEVSHIRDGMMRNNLRKQVGYSVIEVEN 459
|
|
| TAIR|locus:2121055 AT4G38010 "AT4G38010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 138/394 (35%), Positives = 230/394 (58%)
Query: 56 LFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCL 115
+F +PV + ++ +I + +T E++ F +M + P+ TY V+ + GR
Sbjct: 163 VFGEMPVRD-VVSWTGIITGFTRTGLYKEALDTFSKM---DVEPNLATYVCVLVSSGRVG 218
Query: 116 LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIA 175
+ +G +H LI K GN L+ MY C+++ A VF E+ +D VSW+SMI+
Sbjct: 219 CLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMIS 278
Query: 176 GFVACDSPSDALKVFHRMKLANE-SPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE 234
G V C+ +A+ +F M+ ++ P+ L S++SAC SL V G +H Y + G++
Sbjct: 279 GLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIK 338
Query: 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKM 294
D +GTA+V+MY+KCG++E A ++FN +R KN+ +W ++ GLA +G G ++ F +M
Sbjct: 339 WDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEM 398
Query: 295 IQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEM-ARVYNIKPTMEHYGCMVDMLGRAG 353
++ G KP+ ++F A L+AC H GLVDEG+ YF +M +R YN+ P +EHYGCM+D+L RAG
Sbjct: 399 VKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAG 458
Query: 354 LIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVXXXXXXXXXXXXXXXXXXXANYVLAA 413
L++EA +++ MP +P+ I + L AC+N G + YVL +
Sbjct: 459 LLDEALELVKAMPVKPDVRICGAILSACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLS 518
Query: 414 SVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVK 447
++ + + WD A + + KG++KVPG S+++
Sbjct: 519 NIFAANRRWDDVARIRRLMKVKGISKVPGSSYIE 552
|
|
| TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 162/478 (33%), Positives = 262/478 (54%)
Query: 5 HIETLIQLSKT---VHHLHQLHTLFLKTSLDHNTCII---SRFILTSLSIS-LHFTRSLF 57
H + + L++T + L QLH L+T+ + + + S S S +++ +F
Sbjct: 47 HHQRIFSLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVF 106
Query: 58 NNLPVTPPLFAYNTLIRAYAK-TSCSIESIKLFDEMLKTG-LRPDNFTYPFVVKACGRCL 115
+++ F +NTLIRA A S E+ L+ +ML+ G PD T+PFV+KAC
Sbjct: 107 DSIE-NHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIF 165
Query: 116 LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIA 175
G VH I K G D Y+ N L+ +Y +C +D+A+ VF+EMP R +VSW+SMI
Sbjct: 166 GFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMID 225
Query: 176 GFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN---G 232
V AL++F M+ + E P+ T+ S++SAC L ++ G H++ +
Sbjct: 226 ALVRFGEYDSALQLFREMQRSFE-PDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 284
Query: 233 LELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFA 292
+ +DV + +L+EMY KCG + A +VF M++++L SW MI G A +GR A++ F
Sbjct: 285 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFD 344
Query: 293 KMI--QTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350
+M+ + ++P+S++F +L AC+H G V++G+ YFD M R Y I+P +EHYGC+VD++
Sbjct: 345 RMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIA 404
Query: 351 RAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHG-QVXXXXXXXXXXXXXXXXXXXAN- 408
RAG I EA ++ +MP +P+AVI RS L AC G V +N
Sbjct: 405 RAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNG 464
Query: 409 -----YVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAEEMSKETA 461
YVL + V + + W+ + +++ G+ K PGCS +++N S E + +T+
Sbjct: 465 NCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTS 522
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 154/445 (34%), Positives = 255/445 (57%)
Query: 21 QLHTLFLKT-SLDHNTCIISRFILTSLSISLHFT-RSLFNNLPVTPPLFAYNTLIRAYAK 78
+LH LK SLD N+ + S + + + R +F+ + + +N +I Y++
Sbjct: 323 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAGYSQ 381
Query: 79 TSCSIESIKLFDEMLKT-GLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKY 137
E++ LF M ++ GL ++ T VV AC R ++H + K GLD D++
Sbjct: 382 NEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF 441
Query: 138 IGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRM---- 193
+ NTL+ MY+ +ID+A +F +M RD+V+W++MI G+V + DAL + H+M
Sbjct: 442 VQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 501
Query: 194 -KLANES------PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEM 246
K++ + PNS+TL++++ +C +L + G+ IH+YA+ N L DVA+G+ALV+M
Sbjct: 502 RKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDM 561
Query: 247 YSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISF 306
Y+KCG ++ + KVF+ + +KN+ +W ++I +G G AI L M+ G+KP+ ++F
Sbjct: 562 YAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTF 621
Query: 307 SAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366
++ +ACSH G+VDEG F M Y ++P+ +HY C+VD+LGRAG I+EAY ++ MP
Sbjct: 622 ISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMP 681
Query: 367 TEPN-AVILRSFLGACRNHGQVXXXXXXXXXXXXXXXXXXXANYVLAASVSSLSGNWDTA 425
+ N A S LGA R H + ++YVL A++ S +G WD A
Sbjct: 682 RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVA-SHYVLLANIYSSAGLWDKA 740
Query: 426 AELMVAINQKGLNKVPGCSWVKVND 450
E+ + ++G+ K PGCSW++ D
Sbjct: 741 TEVRRNMKEQGVRKEPGCSWIEHGD 765
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 462 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-92 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-83 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-61 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-42 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-30 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 297 bits (762), Expect = 3e-92
Identities = 143/429 (33%), Positives = 240/429 (55%), Gaps = 5/429 (1%)
Query: 21 QLHTLFLKTSLDHNTCIISRFILTSLSI-SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKT 79
++H +KT + + + I LS+ S +F+ + T ++ +I Y K
Sbjct: 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKN 367
Query: 80 SCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIG 139
++++ + M + + PD T V+ AC + +G +H L + GL S +
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 140 NTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANES 199
N L+ MY+ CK ID A VF +P +DV+SW+S+IAG + +AL F +M L +
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK- 486
Query: 200 PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKV 259
PNSVTL++ +SAC + + G+ IH++ + G+ D L AL+++Y +CG + A+
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546
Query: 260 FNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLV 319
FN EK++ SW I+++G +G+G+ A+ LF +M+++G+ PD ++F ++L ACS G+V
Sbjct: 547 FNS-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
Query: 320 DEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLG 379
+G YF M Y+I P ++HY C+VD+LGRAG + EAY+ I MP P+ + + L
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN 665
Query: 380 ACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439
ACR H V L + + + +L+P Y+L ++ + +G WD A + + + GL
Sbjct: 666 ACRIHRHVE-LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724
Query: 440 VPGCSWVKV 448
PGCSWV+V
Sbjct: 725 DPGCSWVEV 733
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 270 bits (692), Expect = 2e-83
Identities = 131/411 (31%), Positives = 221/411 (53%), Gaps = 10/411 (2%)
Query: 54 RSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR 113
R LF+ +P L ++ T+I E+ LF EM + G + T+ +++A
Sbjct: 178 RRLFDEMP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 114 CLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSM 173
G +H + K G+ D ++ L+ MY+ C +I+ A+ VF+ MP + V+W+SM
Sbjct: 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296
Query: 174 IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGL 233
+AG+ +AL +++ M+ + S + T ++ + L + + H+ + G
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356
Query: 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAK 293
LD+ TALV++YSK G +E A VF+ M KNL SW +I+G ++GRG A+ +F +
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416
Query: 294 MIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353
MI G+ P+ ++F A+LSAC + GL ++G F M+ + IKP HY CM+++LGR G
Sbjct: 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476
Query: 354 LIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKL----LLKLEPELGANY 409
L++EAY +IR P +P + + L ACR H + LG+L L + PE NY
Sbjct: 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL-----ELGRLAAEKLYGMGPEKLNNY 531
Query: 410 VLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAEEMSKET 460
V+ ++ + SG AA+++ + +KGL+ P C+W++V S +
Sbjct: 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (548), Expect = 1e-61
Identities = 110/341 (32%), Positives = 187/341 (54%), Gaps = 8/341 (2%)
Query: 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125
LF++N L+ YAK E++ L+ ML G+RPD +T+P V++ CG + G VH+
Sbjct: 152 LFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211
Query: 126 LIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSD 185
+ + G + D + N L+ MY C ++ A+ VF+ MP RD +SW++MI+G+ +
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLE 271
Query: 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245
L++F M+ + P+ +T+ S++SAC L + R G +H Y V G +DV++ +L++
Sbjct: 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331
Query: 246 MYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSIS 305
MY G +A KVF+ M K+ SWT MISG NG + A+ +A M Q + PD I+
Sbjct: 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391
Query: 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365
+++LSAC+ LG +D G E+A + + +++M + I++A + N+
Sbjct: 392 IASVLSACACLGDLDVGVK-LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450
Query: 366 PTEPNAVILRSFL-GACRNHG--QVLYLDDNLGKLLLKLEP 403
P E + + S + G N+ + L ++LL L+P
Sbjct: 451 P-EKDVISWTSIIAGLRLNNRCFEALIF---FRQMLLTLKP 487
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 1e-42
Identities = 83/290 (28%), Positives = 142/290 (48%), Gaps = 16/290 (5%)
Query: 103 TYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEM 162
TY +V+AC I +V+ + G + D+Y+ N +L M+ C + A+ +F+EM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 163 PVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGE 222
P R++ SW ++I G V + +A +F M T V ++ A L + RAG+
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 223 SIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNG 282
+H + G+ D + AL++MYSKCG +E A VF+ M EK +W M++G A +G
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 283 RGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR-------VYNI 335
A+ L+ +M +G+ D +FS ++ S L L++ K + R V N
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 336 KPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHG 385
+VD+ + G +E+A ++ MP + N + + + NHG
Sbjct: 365 --------ALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHG 405
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-30
Identities = 72/240 (30%), Positives = 119/240 (49%)
Query: 84 ESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLL 143
+++KL + M + + D Y + + C + G V S +GN +L
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 144 RMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV 203
M+ E+ A VF +MP RD+ SW+ ++ G+ +AL ++HRM A P+
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 204 TLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLM 263
T ++ C + ++ G +H++ V G ELDV + AL+ MY KCG V A VF+ M
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248
Query: 264 REKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGK 323
++ SW MISG +NG + LF M + + PD ++ ++++SAC LG G+
Sbjct: 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 5e-15
Identities = 39/143 (27%), Positives = 69/143 (48%)
Query: 171 SSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVV 230
+S + + ALK+ M+ + V+L C V G + S A+
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 231 NGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISL 290
+ L V LG A++ M+ + G + A+ VF M E++L SW +++ G A G + A+ L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 291 FAKMIQTGLKPDSISFSAILSAC 313
+ +M+ G++PD +F +L C
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTC 197
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 6e-13
Identities = 62/282 (21%), Positives = 124/282 (43%), Gaps = 61/282 (21%)
Query: 123 VHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR----DVVSWSSMIAGFV 178
V L+ + GL +D + TL+ A ++D VF EM +V ++ ++I G
Sbjct: 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518
Query: 179 ACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELD-- 236
+ A + M+ N P+ V +L+SAC ++G ++ V+ ++ +
Sbjct: 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG-----QSGAVDRAFDVLAEMKAETH 573
Query: 237 ------VALGTALVEMYSKCGHVEKAFKVFNLMREKNLQS----WTIMISGLADNGRGNY 286
+ +G AL++ + G V++A +V+ ++ E N++ +TI ++ + G ++
Sbjct: 574 PIDPDHITVG-ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632
Query: 287 AISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMV 346
A+S++ M + G+KPD + FSA +V
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSA------------------------------------LV 656
Query: 347 DMLGRAGLIEEAYHIIRNMPTE---PNAVILRSFLGACRNHG 385
D+ G AG +++A+ I+++ + V S +GAC N
Sbjct: 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 68/267 (25%), Positives = 109/267 (40%), Gaps = 42/267 (15%)
Query: 177 FVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELD 236
F AC + F KL S T L+S C S ++ + GL+ D
Sbjct: 413 FKACKKQRAVKEAFRFAKLIRNPTLS-TFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471
Query: 237 VALGTALVEMYSKCGHVEKAFKVFNLMR----EKNLQSWTIMISGLADNGRGNYAISLFA 292
L T L+ +K G V+ F+VF+ M E N+ ++ +I G A G+ A +
Sbjct: 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 293 KMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA 352
M +KPD + F+A++SAC G VD FD +A +M
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLA----------------EMKAET 572
Query: 353 GLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQV---LYLDDNLGKLLLKLEPELGANY 409
P +P+ + + + + AC N GQV + + + +K PE+ Y
Sbjct: 573 ------------HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV---Y 617
Query: 410 VLAASVSSLSGNWDTAAELMVAINQKG 436
+A + S G+WD A + + +KG
Sbjct: 618 TIAVNSCSQKGDWDFALSIYDDMKKKG 644
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 67/327 (20%), Positives = 132/327 (40%), Gaps = 51/327 (15%)
Query: 69 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIF 128
Y TLI AK+ ++F EM+ G+ + T+ ++ C R + + ++
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 129 KVGLDSDKYIGNTLLRMYAACKE---IDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSD 185
+ D+ + N L+ +AC + +D A V EM A P D
Sbjct: 535 SKNVKPDRVVFNALI---SACGQSGAVDRAFDVLAEMK---------------AETHPID 576
Query: 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINV-RAGE---SIHSYAVVNGLELDVALGT 241
P+ +T+ +L+ AC + V RA E IH Y + E + T
Sbjct: 577 --------------PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE----VYT 618
Query: 242 ALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLAD----NGRGNYAISLFAKMIQT 297
V S+ G + A +++ M++K ++ + S L D G + A + +
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 298 GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357
G+K ++S+S+++ ACS+ + ++++ + ++PT+ ++ L + +
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDI-KSIKLRPTVSTMNALITALCEGNQLPK 737
Query: 358 AYHIIRNMPT---EPNAVILRSFLGAC 381
A ++ M PN + L A
Sbjct: 738 ALEVLSEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 4e-08
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 266 KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH 315
++ ++ +I G G+ A+ LF +M + G+KP+ ++S ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 6e-08
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR 113
P + YNTLI Y K E++KLF+EM K G++P+ +TY ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSAC 212
DVV+++++I G+ +ALK+F+ MK PN T L+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 241 TALVEMYSKCGHVEKAFKVFNLMREKNLQ----SWTIMISGLAD 280
L++ Y K G VE+A K+FN M+++ ++ +++I+I GL
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 9e-05
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 67 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD 100
YNTLI K E+++LF EM + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 2e-04
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS 303
++ +I GL GR A+ LF +M + G++PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 301 PDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR 351
PD ++++ ++ G V+E F+EM + IKP + Y ++D L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 67 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 97
YN+LI Y K E+++LF EM + G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 241 TALVEMYSKCGHVEKAFKVFNLMREKNL 268
+L+ Y K G +E+A ++F M+EK +
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.004
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 168 VSWSSMIAGFVACDSPSDALKVFHRMK 194
V+++S+I+G+ +AL++F MK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 462 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.92 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.6 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.52 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.5 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.38 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.36 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.27 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.27 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.25 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.23 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.18 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.13 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.12 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.1 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.08 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.08 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.07 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.06 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.01 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.94 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.93 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.88 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.86 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.85 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.79 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.78 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.73 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.73 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.73 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.73 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.65 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.6 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.54 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.53 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.52 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.51 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.5 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.5 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.5 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.49 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.37 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.37 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.34 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.34 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.31 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.3 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.3 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.27 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.17 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.12 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.11 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.1 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.08 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.06 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.03 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.02 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.94 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.93 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.92 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.9 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.9 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.89 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.86 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.86 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.82 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.81 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.79 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.79 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.77 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.76 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.75 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.72 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.7 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.7 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.68 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.65 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.64 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.61 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.61 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.56 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.55 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.55 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.52 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.52 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.5 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.49 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.49 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.48 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.47 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.47 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.45 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.43 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.43 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.42 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.38 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.33 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.31 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.3 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.16 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.1 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.09 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.09 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.0 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.98 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.97 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.96 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.94 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.91 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.87 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.86 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.8 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.77 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.66 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.61 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.45 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.44 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.44 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.39 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.33 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.31 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.24 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.13 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.07 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.05 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.92 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.86 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.83 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.83 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.81 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.79 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.7 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.69 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.5 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.39 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.33 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.32 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.27 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.18 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.18 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.1 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.08 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.98 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.96 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.92 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.89 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.84 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.75 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.58 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.57 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.55 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.53 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.49 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.42 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.33 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.17 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.1 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.08 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.04 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.94 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.94 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.76 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.72 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.56 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.53 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.53 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.47 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.44 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.39 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.29 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.13 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.97 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.88 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.77 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.74 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.56 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.53 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.38 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.22 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.17 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.88 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.82 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.81 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 91.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.61 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.59 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.25 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.04 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.94 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.94 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 90.66 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.63 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.6 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.17 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.14 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.1 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.97 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.95 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.81 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.69 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.65 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 89.59 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.17 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.07 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.69 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.58 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.5 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 87.38 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.14 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 86.95 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.81 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.42 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.78 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.45 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.29 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.9 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.75 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.62 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.59 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.49 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.44 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.41 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.05 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 83.81 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.65 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 83.65 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.4 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 83.31 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.27 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.13 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.04 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.96 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.94 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.89 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.85 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.94 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.6 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 81.57 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 80.51 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=556.92 Aligned_cols=454 Identities=29% Similarity=0.549 Sum_probs=441.3
Q ss_pred HHHHHHHhh---cChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCC
Q 012504 5 HIETLIQLS---KTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTS 80 (462)
Q Consensus 5 ~~~~~l~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g 80 (462)
.+..++..| ++++.+.+++..|.+.|+.||..+||.++ .+...|+++.|+++|++|+. ||..+||.+|.+|++.|
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC-CCeeeHHHHHHHHHHCc
Confidence 344555555 67899999999999999999999999999 66666799999999999998 99999999999999999
Q ss_pred CchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHh
Q 012504 81 CSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFE 160 (462)
Q Consensus 81 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 160 (462)
++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+++.|+++|++.|++++|.++|+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH
Q 012504 161 EMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG 240 (462)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 240 (462)
+|.++|..+||.++.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|++|+..++
T Consensus 284 ~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD 320 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (462)
+.|+++|+++|++++|.++|++|.++|+.+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..+
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++|+.+|...|+. +.|..+++++.+
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~-~~a~~~~~~l~~ 522 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL-ELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc-HHHHHHHHHHhC
Confidence 9999999998877999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCCccceEEECCeEEEEecCCc
Q 012504 401 LEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAEEMSKET 460 (462)
Q Consensus 401 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (462)
+.|++...|..++.+|.+.|++++|.++++.|++.|+.+.|+++|+++++.+|.|.++|.
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 999999999999999999999999999999999999999999999999999999999875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=548.33 Aligned_cols=452 Identities=31% Similarity=0.612 Sum_probs=435.9
Q ss_pred HHHHHHhh---cChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCC
Q 012504 6 IETLIQLS---KTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSC 81 (462)
Q Consensus 6 ~~~~l~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~ 81 (462)
+.+++..| |+++.+++++..|.+.|+.||..+||.++ .+...|++++|.++|++|+. ||..+||.+|.+|++.|+
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCC
Confidence 44455555 67888899999999999999999999999 66666799999999999988 999999999999999999
Q ss_pred chhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhc
Q 012504 82 SIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEE 161 (462)
Q Consensus 82 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 161 (462)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHH
Q 012504 162 MPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGT 241 (462)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (462)
|.++|..+|+.++.+|.+.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..+++
T Consensus 450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 9999999999999999999999999999999986 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDE 321 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 321 (462)
+|+++|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH
Confidence 9999999999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 322 GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|+.+|+..+|++|+.+|..+|+. +.++...+++.++
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~-e~~e~~a~~l~~l 686 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV-ELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhh
Confidence 999999999767999999999999999999999999999999999899999999999999999999 9999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCCccceEEECCeEEEEecCCcC
Q 012504 402 EPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWVKVNDGSAEEMSKETA 461 (462)
Q Consensus 402 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (462)
.|+++..|..+++.|...|+|++|.++.+.|++.|+.+.|++|||++++.+|.|.++|+.
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999999999999863
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=496.20 Aligned_cols=431 Identities=26% Similarity=0.410 Sum_probs=398.0
Q ss_pred HHHHHHhhc---ChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCC
Q 012504 6 IETLIQLSK---TVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSC 81 (462)
Q Consensus 6 ~~~~l~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~ 81 (462)
|.+++..|+ ++..+++++..+.+.|+.||..++|.++ .+...|+++.|.++|++|+. ||..+||++|.+|++.|+
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-~d~~s~n~li~~~~~~g~ 268 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-RDCISWNAMISGYFENGE 268 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-CCcchhHHHHHHHHhCCC
Confidence 334444442 4455555666666666666666777777 55556699999999999998 999999999999999999
Q ss_pred chhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhc
Q 012504 82 SIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEE 161 (462)
Q Consensus 82 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 161 (462)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++
T Consensus 269 ~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHH
Q 012504 162 MPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGT 241 (462)
Q Consensus 162 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (462)
|..+|..+|+.++.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++
T Consensus 349 m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred CCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDE 321 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 321 (462)
.|+++|++.|++++|.++|++|.++|+.+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+++.
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 9999999999999999999999999999999999999999999999999999986 599999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 322 GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
+.+++..+.+. |+.++..+++.|+++|++.|++++|.++|+.+ .||..+|++++.+|++.|+. ++|.++|++|.+.
T Consensus 508 ~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~-~~A~~lf~~M~~~ 583 (857)
T PLN03077 508 GKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKG-SMAVELFNRMVES 583 (857)
T ss_pred hHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Confidence 99999999887 99999999999999999999999999999998 78999999999999999999 9999999999874
Q ss_pred C-CCCCchHHHHHHHHhhcCCHHHHHHHHHHHh-cCCCccCCc
Q 012504 402 E-PELGANYVLAASVSSLSGNWDTAAELMVAIN-QKGLNKVPG 442 (462)
Q Consensus 402 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ 442 (462)
+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..
T Consensus 584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 3 3345589999999999999999999999998 678887653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-61 Score=476.26 Aligned_cols=434 Identities=14% Similarity=0.179 Sum_probs=402.1
Q ss_pred hhcChhHHHHHHHHHHHhCC-CCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHH
Q 012504 12 LSKTVHHLHQLHTLFLKTSL-DHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLF 89 (462)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~ 89 (462)
.+|+++.|.++++.|.+.|+ .++..+++.++ .|...|.+++|.++|+.|+. ||..+|+.+|.+|++.|+++.|.++|
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45899999999999999996 45666777777 77778899999999999998 99999999999999999999999999
Q ss_pred HHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC----CC
Q 012504 90 DEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP----VR 165 (462)
Q Consensus 90 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~ 165 (462)
+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .|
T Consensus 461 ~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 461 RLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 58
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHH--CCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKL--ANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTAL 243 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 243 (462)
|..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 999999999999999999999999999976 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMRE----KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLV 319 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 319 (462)
+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999984 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012504 320 DEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT---EPNAVILRSFLGACRNHGQVLYLDDNLGK 396 (462)
Q Consensus 320 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 396 (462)
++|.++|++|... ++.||..+|+.||.+|++.|++++|.++|++|.. .||..+|+.++.+|.+.|+. +.|.++++
T Consensus 701 eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l-e~A~~l~~ 778 (1060)
T PLN03218 701 KKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA-DVGLDLLS 778 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHH
Confidence 9999999999876 9999999999999999999999999999999853 69999999999999999999 99999999
Q ss_pred HHHhcC-CCCCchHHHHHHHHh----hc-------------------CCHHHHHHHHHHHhcCCCccCCccceEEE
Q 012504 397 LLLKLE-PELGANYVLAASVSS----LS-------------------GNWDTAAELMVAINQKGLNKVPGCSWVKV 448 (462)
Q Consensus 397 ~~~~~~-p~~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 448 (462)
++.+.+ .++..+|..++..|. ++ +..++|..+|++|++.|+.|+..+....+
T Consensus 779 ~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 779 QAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 999854 334557877775533 22 22467999999999999999865444333
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-60 Score=469.65 Aligned_cols=433 Identities=17% Similarity=0.220 Sum_probs=396.8
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCC---CCCcccHHHHHHHHHhCCC
Q 012504 6 IETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPV---TPPLFAYNTLIRAYAKTSC 81 (462)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~---~~~~~~y~~li~~~~~~g~ 81 (462)
+...+..+|+++.|.++|+.|.+.|+.||..+|+.+| .|...|+++.|.++|++|.. .||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 3444455589999999999999999999999999999 77777899999999999974 3999999999999999999
Q ss_pred chhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHH--hCCCCccchHhHHHHHHHhcCChhHHHHHH
Q 012504 82 SIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFK--VGLDSDKYIGNTLLRMYAACKEIDVAKAVF 159 (462)
Q Consensus 82 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 159 (462)
+++|+++|+.|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.. .|+.||..+|++++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 578999999999999999999999999999
Q ss_pred hcCCC----CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCc
Q 012504 160 EEMPV----RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLEL 235 (462)
Q Consensus 160 ~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (462)
++|.+ |+..+|+.+|.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99974 57799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhcc----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMR----EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999995 58999999999999999999999999999999999999999999999
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cC-------------------CHHHHHHHHHhCCC-
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AG-------------------LIEEAYHIIRNMPT- 367 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~-------------------~~~~A~~~~~~~~~- 367 (462)
+|++.|+++.|.+++.+|.+. |+.||..+|+.++..|.+ ++ ..++|..+|++|..
T Consensus 763 a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 999999999999999999887 999999999999876432 11 23679999999954
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCCc
Q 012504 368 --EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK-LEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPG 442 (462)
Q Consensus 368 --~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 442 (462)
.|+..+|..++.++...+.. ..+..+++.+.. -.+++..+|..++.++.+. .++|..++++|.+.|+.|+..
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~-~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDA-TLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccH-HHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 59999999999887788888 888888877653 3456677999999987332 368999999999999998765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=433.65 Aligned_cols=384 Identities=23% Similarity=0.373 Sum_probs=365.2
Q ss_pred ccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCC-CCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCcc
Q 012504 58 NNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG-LRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDK 136 (462)
Q Consensus 58 ~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (462)
...+..++..+|+.+|..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||.
T Consensus 79 ~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~ 158 (697)
T PLN03081 79 DDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158 (697)
T ss_pred ccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch
Confidence 334444677899999999999999999999999999865 7899999999999999999999999999999999999999
Q ss_pred chHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 012504 137 YIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI 216 (462)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 216 (462)
.+|+.|+.+|++.|+++.|.++|++|.+||..+|+.++.+|.+.|++++|+++|++|.+.|+.|+..||..++.+|+..|
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 217 NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+.+.+.+++..+.+.|+.++..+++.|+++|+++|++++|.++|++|.++|+.+|+.+|.+|++.|++++|.++|++|.+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 012504 297 TGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRS 376 (462)
Q Consensus 297 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 376 (462)
.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|+.|+++|++.|++++|.++|++|. +||..+|+.
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~ 396 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNA 396 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHH
Confidence 999999999999999999999999999999999987 999999999999999999999999999999998 579999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcC-CCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc-CCCccCCccc
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLE-PELGANYVLAASVSSLSGNWDTAAELMVAINQ-KGLNKVPGCS 444 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 444 (462)
++.+|++.|+. ++|.++|++|.+.+ .++..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+....
T Consensus 397 lI~~y~~~G~~-~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 397 LIAGYGNHGRG-TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 99999999999 99999999998743 33456999999999999999999999999985 5888765443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=246.96 Aligned_cols=420 Identities=13% Similarity=0.043 Sum_probs=250.6
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCC--CCCcccHHHHHHHHHhCCCch
Q 012504 7 ETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPV--TPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~--~~~~~~y~~li~~~~~~g~~~ 83 (462)
...+...|+++.|..+++.+.+.. +.+..++..+. .+...|++++|.+.|++... +.+..++..+...+...|+++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHH
Confidence 344455577777777777776543 33444555554 44455577777777766422 134455666667777777777
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 84 ESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 84 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
+|.+.|+.+.+.+. .+..++..+...+.+.|+.++|..+++.+.+.+ +.+...+..++..+...|++++|..+++.+.
T Consensus 517 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 517 DAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777766532 245566666666666777777777777766654 2344555666666677777777777766664
Q ss_pred C---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH
Q 012504 164 V---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG 240 (462)
Q Consensus 164 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 240 (462)
. .+..+|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 2 345566666666666777777777776666542 2344556666666666666666666666666553 4445566
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG 317 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 317 (462)
..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+++...+ |+..++..+..++...|
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCC
Confidence 6666666666666666666666653 233455555666666666666666666666542 33344555555566666
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
++++|...++.+.+ ..+.+...+..+...|...|++++|.+.|+++.. ++++..+..+...+...|+. + |...+
T Consensus 751 ~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-~-A~~~~ 826 (899)
T TIGR02917 751 NTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDP-R-ALEYA 826 (899)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcH-H-HHHHH
Confidence 66666666666654 2234455555666666666666666666665532 23445555555555555552 2 55555
Q ss_pred HHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 396 KLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 396 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+++.+..|+++..+..++.++...|++++|.++++++.+.++
T Consensus 827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 555555555555555555555555555555555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-27 Score=241.97 Aligned_cols=417 Identities=9% Similarity=-0.010 Sum_probs=260.5
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCC--CCCcccHHHHHHHHHhCCCch
Q 012504 7 ETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPV--TPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~--~~~~~~y~~li~~~~~~g~~~ 83 (462)
..++...|+++.|.+.++.+.+... .+...+..+. .+...|++++|.+.|+++.. +.+..++..+...+.+.|+.+
T Consensus 472 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 472 GAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHH
Confidence 3444455666777777766665431 1222333333 33444566777766665532 134556666666676777777
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 84 ESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 84 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
+|...++++.+.+. .+...+..+...+...|++++|..+++.+.+.. +.+..+|..+..++...|++++|...|+++.
T Consensus 551 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 551 EAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777665432 244555566666666777777777777666543 3345566666777777777777777776654
Q ss_pred C---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH
Q 012504 164 V---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG 240 (462)
Q Consensus 164 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 240 (462)
. .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.+.. +.+...+
T Consensus 629 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 706 (899)
T TIGR02917 629 ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGF 706 (899)
T ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHH
Confidence 2 245556666666667777777777777666542 3345566666666667777777777777666654 4455566
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE--KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGL 318 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 318 (462)
..+...+...|++++|.+.|+.+.+ |+..++..++..+...|++++|.+.++++.+.. +.+...+..+...|...|+
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 6666667777777777777766653 334555566666777777777777777666652 3345566666666666777
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012504 319 VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGK 396 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 396 (462)
+++|...|+++.+. .+++..++..+...+...|+ .+|+..++++.. +.++..+..+...+...|++ ++|...++
T Consensus 786 ~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~ 861 (899)
T TIGR02917 786 YDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA-DRALPLLR 861 (899)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 77777777776652 24456666666666777666 667666666522 23345555666666677777 77777777
Q ss_pred HHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 397 LLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 397 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
++.+..|.++.++..++.++.+.|++++|.+++++|.
T Consensus 862 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 862 KAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777666677777777777777777777776664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-20 Score=194.94 Aligned_cols=422 Identities=12% Similarity=0.027 Sum_probs=238.4
Q ss_pred HHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh--hhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCch
Q 012504 8 TLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI--LTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~ 83 (462)
.++...|+.++|.+.++.+.+.+ +|+........ ....-++.++|.+.++++... .+...+..+...+...|+.+
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 35667799999999999998764 23322111111 113346899999999887543 34566788888999999999
Q ss_pred hHHHHHHHHHHCCC------------------C--------------CCcchHH---------------------HHHHH
Q 012504 84 ESIKLFDEMLKTGL------------------R--------------PDNFTYP---------------------FVVKA 110 (462)
Q Consensus 84 ~a~~~~~~m~~~g~------------------~--------------p~~~~~~---------------------~ll~~ 110 (462)
+|++.++++.+... . |+...+. .....
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999998865321 0 1110000 11223
Q ss_pred hhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--CCh---hhHH------------HH
Q 012504 111 CGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--RDV---VSWS------------SM 173 (462)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~------------~l 173 (462)
+...|++++|...+++.++.. +.+...+..+..++.+.|++++|+..|++..+ |+. ..|. ..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 455688888888888888765 33567778888888888999999888887763 211 1121 22
Q ss_pred HHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHH------
Q 012504 174 IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMY------ 247 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------ 247 (462)
...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHH
Confidence 345677888888988888888753 3355667777888888888998888888888764 33344444444443
Q ss_pred ------------------------------------HhcCChHHHHHHHhhccC--C-ChhhHHHHHHHHHHcCChHHHH
Q 012504 248 ------------------------------------SKCGHVEKAFKVFNLMRE--K-NLQSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 248 ------------------------------------~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~ 288 (462)
...|++++|++.|++..+ | ++..+..+...|.+.|++++|.
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 233444444444444432 1 2233444444455555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc-----------------------------------
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVY----------------------------------- 333 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------------------------- 333 (462)
..++++.+... .+...+..+...+...++.++|...++.+....
T Consensus 516 ~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 55555443211 122222222222334444555555444332100
Q ss_pred ---CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 334 ---NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 334 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
..+++...+..+...+.+.|++++|++.|+++.. +.+...+..+...+...|+. ++|.+.++.+.+..|+++..
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~-~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL-AAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHhccCCCChHH
Confidence 0011122233344444444555555555544421 22344444555555555555 55555555555555555555
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 409 YVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
+..++.++...|++++|.++++.+...
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 555555555555555555555555443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-20 Score=190.72 Aligned_cols=409 Identities=9% Similarity=-0.019 Sum_probs=292.7
Q ss_pred HhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCC-CCc---ccHHH------------HH
Q 012504 11 QLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVT-PPL---FAYNT------------LI 73 (462)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~-~~~---~~y~~------------li 73 (462)
...|+++.|...++..++... -+...+..+- .+...|++++|...|++.... |+. ..|.. ..
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 344677777777777776531 1333333333 334455777777777654321 221 11211 13
Q ss_pred HHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChh
Q 012504 74 RAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEID 153 (462)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (462)
..+.+.|++++|++.|+++.+... .+...+..+...+...|++++|++.|+++++... .+...+..+...+. .++.+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHH
Confidence 345677788888888888777532 2445556666777777888888888887777642 23445555555553 45677
Q ss_pred HHHHHHhcCCCCC------------hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhH
Q 012504 154 VAKAVFEEMPVRD------------VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAG 221 (462)
Q Consensus 154 ~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 221 (462)
+|...++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 7777777665321 1234455667788899999999999988753 23556777788889999999999
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC----h---------hhHHHHHHHHHHcCChHHHH
Q 012504 222 ESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN----L---------QSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~a~ 288 (462)
...++++.+.. +.+...+..+...+...++.++|...++.+.... . ..+..+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999988754 4455555556666778899999999998876421 1 11234567788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT- 367 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 367 (462)
.+++. .+++...+..+...+...|++++|...|+++.+. -+.+...+..++..|...|++++|++.++.+..
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 98872 2445567777888899999999999999999874 344588899999999999999999999998754
Q ss_pred C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 368 E-PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA------NYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 368 ~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
. .+...+..+..++...|++ ++|.++++++....|+++. ++..++..+...|++++|++.|+...
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDT-AAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCH-HHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 3466677788889999999 9999999999988766543 56667899999999999999999875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-22 Score=177.24 Aligned_cols=363 Identities=14% Similarity=0.129 Sum_probs=295.9
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccc-hHhHHH
Q 012504 65 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKY-IGNTLL 143 (462)
Q Consensus 65 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 143 (462)
-..+|..+...+-..|++++|+.+++.+++...+ ....|..+..++...|+.+.|.+.+...++.+ |+.. ..+.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 4568999999999999999999999999986433 57789999999999999999999999988864 4333 234455
Q ss_pred HHHHhcCChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhcccchH
Q 012504 144 RMYAACKEIDVAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN-SVTLVSLVSACTSLINVR 219 (462)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~ 219 (462)
..+-..|++.+|...|.+..+ | -.++|..|...+-.+|+...|+..|++..+. .|+ ...|..|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 555667889999888877664 3 3457888888888899999999999988774 454 357888888888889999
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--KN-LQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
.|...|.+..... +....++..+...|...|.++-|+..|++..+ |+ +..|+.|..++-..|+..+|.+.+.+...
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 9998888887764 44566777888888999999999999998875 33 46899999999999999999999998887
Q ss_pred CCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HH
Q 012504 297 TGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMP-TEPN-AV 372 (462)
Q Consensus 297 ~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~ 372 (462)
. .|+ +...+.|...+...|.++.|..+|..... +.|. ....+.|...|-+.|++++|+..|++.. .+|+ ..
T Consensus 349 l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 L--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred h--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 5 344 56788888899999999999999988874 3455 6678888889999999999999998864 3454 67
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
.++.+...|-..|+. +.|.+.+.++...+|.-.+.+..|+.+|...|+..+|+.-|+...+..+..
T Consensus 424 a~~NmGnt~ke~g~v-~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDV-SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHHhcchHHHHhhhH-HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 888888999999999 999999999999999988899999999999999999999999887766543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-20 Score=182.39 Aligned_cols=360 Identities=13% Similarity=0.005 Sum_probs=264.9
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHh
Q 012504 69 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAA 148 (462)
Q Consensus 69 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (462)
+......+.+.|++++|++.|++.++ ..|+...|..+..++...|++++|...++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33455566667777777777777665 34566666666666777777777777777766654 2234556666667777
Q ss_pred cCChhHHHHHHhcCC---------------------------------CCChhhHHHH----------------------
Q 012504 149 CKEIDVAKAVFEEMP---------------------------------VRDVVSWSSM---------------------- 173 (462)
Q Consensus 149 ~~~~~~A~~~~~~~~---------------------------------~~~~~~~~~l---------------------- 173 (462)
.|++++|+..|..+. ..+...+..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 777776655432221 0000000000
Q ss_pred --------HHH------HHcCCChhHHHHHHHHhHHCC-CCC-CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchH
Q 012504 174 --------IAG------FVACDSPSDALKVFHRMKLAN-ESP-NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDV 237 (462)
Q Consensus 174 --------~~~------~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 237 (462)
+.. ....+++++|.+.|++....+ ..| +...+..+...+...|++++|...+++..+.. +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 000 012357889999999988764 233 44567777888889999999999999998875 4456
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS 314 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 314 (462)
..|..+..++...|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 6888899999999999999999998764 356789999999999999999999999999863 224567778888899
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HH-------HHHHHHHHHHHcC
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN-AV-------ILRSFLGACRNHG 385 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~-------~~~~l~~~~~~~~ 385 (462)
+.|++++|...+++..+ ..+.+...++.+...+...|++++|++.|++... .|+ .. .++.....+...|
T Consensus 445 ~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999986 3344578899999999999999999999988632 222 11 1222222334468
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
++ ++|..+++++.++.|++...+..++.++.+.|++++|++.|++..+..
T Consensus 523 ~~-~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 523 DF-IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 99 999999999999999998889999999999999999999999887553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=181.00 Aligned_cols=304 Identities=13% Similarity=0.071 Sum_probs=208.7
Q ss_pred HHhcCChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC---HHHHHHHHHHHhcccchH
Q 012504 146 YAACKEIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN---SVTLVSLVSACTSLINVR 219 (462)
Q Consensus 146 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~ 219 (462)
+...|++++|+..|+++... +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44556666666666665522 334556666666666666666666666655422111 134555666666677777
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh--------hhHHHHHHHHHHcCChHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL--------QSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
.|..+++++.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+. ..+..+...+...|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777777766543 34556666677777777777777777776654211 13455677778888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 012504 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN 370 (462)
Q Consensus 292 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~ 370 (462)
+++.+.. +.+...+..+...+.+.|++++|.++++++... +......++..++.+|.+.|++++|...++++.. .|+
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8887753 223556777778888889999999999888764 2222245678888889999999999999888743 466
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh---cCCHHHHHHHHHHHhcCCCccCCccceEE
Q 012504 371 AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL---SGNWDTAAELMVAINQKGLNKVPGCSWVK 447 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 447 (462)
...+..++..+.+.|++ +.|..+++++.+..|++. .+..+...+.. .|+.++++.++++|.++++.++|.+....
T Consensus 282 ~~~~~~la~~~~~~g~~-~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~ 359 (389)
T PRK11788 282 ADLLLALAQLLEEQEGP-EAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRN 359 (389)
T ss_pred chHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCC
Confidence 66777888889999999 999999999998888876 45444444443 56889999999999998888888865544
Q ss_pred ECCeEEE
Q 012504 448 VNDGSAE 454 (462)
Q Consensus 448 ~~~~~~~ 454 (462)
.+....+
T Consensus 360 cg~~~~~ 366 (389)
T PRK11788 360 CGFTART 366 (389)
T ss_pred CCCCCcc
Confidence 4444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-21 Score=169.54 Aligned_cols=368 Identities=15% Similarity=0.107 Sum_probs=312.0
Q ss_pred hhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHH-hhhhcCchhHH
Q 012504 45 SLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKA-CGRCLLIGIGG 121 (462)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~ 121 (462)
...|++++|+..++.+-.. ..+.+|..+..++...|+.+.|.+.|.+.++ +.|+.....+-+.. +-..|++.+|.
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 5556999999999876433 4688999999999999999999999999987 45666655444443 34579999999
Q ss_pred HHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCC---hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCC
Q 012504 122 SVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRD---VVSWSSMIAGFVACDSPSDALKVFHRMKLANE 198 (462)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 198 (462)
..+.+.++..+ -=...|+.|...+-..|++..|+..|++...-| ..+|-.|...|...+.+++|+..|.+....
T Consensus 205 ~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 205 ACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 99998887642 234678889999999999999999999988543 568999999999999999999999998774
Q ss_pred CCC-HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHHH
Q 012504 199 SPN-SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTIM 274 (462)
Q Consensus 199 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 274 (462)
.|+ ...+..+...|-.+|.++.|+..|++.++.. +--...|+.|..++-..|+..+|.+.|.+... + ...+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 554 4678888888999999999999999999875 44577999999999999999999999998874 3 45788999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhc
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRA 352 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 352 (462)
..+|...|.+++|..+|....+- .|. ...++.|...|-.+|++++|...|++.. .+.|+ ...|+.+...|...
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHh
Confidence 99999999999999999998874 555 4578899999999999999999999998 56887 78999999999999
Q ss_pred CCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHH
Q 012504 353 GLIEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 353 ~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
|+.+.|.+.+.+... .|. ....+.|...|...|+. .+|++.++.++++.|+.+..+..++.++.--.+|.+
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni-~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI-PEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc-HHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999988743 444 67888999999999999 999999999999999999999999887755444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-19 Score=173.91 Aligned_cols=350 Identities=8% Similarity=-0.050 Sum_probs=273.6
Q ss_pred CHHHHHHHhccCCCC-----CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHH
Q 012504 49 SLHFTRSLFNNLPVT-----PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSV 123 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~-----~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 123 (462)
+++..--.|...+++ .+..-...++..+.+.|++++|+.+++........+ ...+..+..+....|+++.|...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~ 98 (656)
T PRK15174 20 DWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQV 98 (656)
T ss_pred chhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHH
Confidence 444444455555443 334445667788889999999999999999875543 44455555666779999999999
Q ss_pred HHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCC
Q 012504 124 HSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESP 200 (462)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 200 (462)
++.+.... +.+...+..+...+...|++++|...|++... | +...+..+...+...|++++|...++.+..... .
T Consensus 99 l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~ 176 (656)
T PRK15174 99 VNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-P 176 (656)
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-C
Confidence 99999885 33566788889999999999999999999864 3 567888899999999999999999998876532 2
Q ss_pred CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHH
Q 012504 201 NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISG 277 (462)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 277 (462)
+...+..+ ..+...|++++|...++.+.+....++......++.++...|++++|+..+++..+ .+...+..+...
T Consensus 177 ~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~ 255 (656)
T PRK15174 177 RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLA 255 (656)
T ss_pred CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 23333333 34778899999999999988765334445556667888999999999999998875 345778889999
Q ss_pred HHHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 278 LADNGRGNY----AISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 278 ~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
+...|++++ |...|++..... +.+...+..+...+...|++++|...+++.... -+.+...+..+..+|.+.|
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 999999986 899999998863 224668888899999999999999999999864 2334667788899999999
Q ss_pred CHHHHHHHHHhCCC-CCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 354 LIEEAYHIIRNMPT-EPNAVI-LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 354 ~~~~A~~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++++|...|+++.. .|+... +..+..++...|+. ++|...++++.+..|++.
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~-deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKT-SEAESVFEHYIQARASHL 386 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhChhhc
Confidence 99999999998753 455433 44456778999999 999999999999998875
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=169.05 Aligned_cols=293 Identities=12% Similarity=0.042 Sum_probs=183.8
Q ss_pred HHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChh
Q 012504 74 RAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEID 153 (462)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (462)
..+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++..
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------------- 105 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---------------- 105 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH----------------
Confidence 344556677777777777766532 133455555566666666666666666655532111100
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCC
Q 012504 154 VAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGL 233 (462)
Q Consensus 154 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (462)
....+..+...|.+.|++++|..+|+++.+.. +++..++..++..+...|++++|...++.+.+.+.
T Consensus 106 ------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 106 ------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 01234444455555555555555555554431 23344555555555555555555555555554432
Q ss_pred Cch----HhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012504 234 ELD----VALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISF 306 (462)
Q Consensus 234 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 306 (462)
.+. ...+..++..+.+.|++++|...|+++.+. +...+..+...+.+.|++++|.+.++++...+......++
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHH
Confidence 211 123445666677777777777777776532 3456667778888888888888888888775333224567
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHH--
Q 012504 307 SAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFLGACRN-- 383 (462)
Q Consensus 307 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~-- 383 (462)
..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++.. .|+...+..++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 77888888888888888888888754 46656667888888888888888888887643 5788888877776654
Q ss_pred -cCChHHHHHHHHHHHHh
Q 012504 384 -HGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 384 -~~~~~~~a~~~~~~~~~ 400 (462)
.|+. .++..+++++.+
T Consensus 330 ~~g~~-~~a~~~~~~~~~ 346 (389)
T PRK11788 330 EEGRA-KESLLLLRDLVG 346 (389)
T ss_pred CCccc-hhHHHHHHHHHH
Confidence 4577 778888887775
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-18 Score=171.86 Aligned_cols=387 Identities=9% Similarity=-0.035 Sum_probs=281.4
Q ss_pred hhcCCHHHHHHHhccCCC-C-CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHH
Q 012504 45 SLSISLHFTRSLFNNLPV-T-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGS 122 (462)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~-~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 122 (462)
...|+.++|.+++.+... . .+...+..+...+...|++++|.++|+..++.. +.+...+..+...+...|++++|..
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~ 104 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALV 104 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777799999998887653 2 444468888889999999999999999988753 2245556677777888999999999
Q ss_pred HHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCC
Q 012504 123 VHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANES 199 (462)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 199 (462)
.++.+++.. +.+.. +..+..++...|+.++|+..++++.. | +...+..+...+...+..++|++.++.... .
T Consensus 105 ~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~ 179 (765)
T PRK10049 105 KAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---T 179 (765)
T ss_pred HHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---C
Confidence 999998874 33444 77888888999999999999988874 3 555666777788888888999988876654 2
Q ss_pred CCH------HHHHHHHHHHh-----cccch---HhHHHHHHHHHHh-CCCchHh-HH----HHHHHHHHhcCChHHHHHH
Q 012504 200 PNS------VTLVSLVSACT-----SLINV---RAGESIHSYAVVN-GLELDVA-LG----TALVEMYSKCGHVEKAFKV 259 (462)
Q Consensus 200 p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~ 259 (462)
|+. .....++.... ..+++ +.|...++.+.+. ...|+.. .+ ...+.++...|++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 321 01112222221 12234 6677788887754 1122221 11 1112344567899999999
Q ss_pred HhhccCCC---h-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 260 FNLMREKN---L-QSWTIMISGLADNGRGNYAISLFAKMIQTGLKP---DSISFSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 260 ~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
|+.+.+.+ + .....+...|...|++++|...|+++....... .......+..++...|++++|..+++.+...
T Consensus 260 ~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 260 YQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 99988643 2 122235678999999999999999987653211 1234556666788999999999999998764
Q ss_pred cC----------CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012504 333 YN----------IKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKL 397 (462)
Q Consensus 333 ~~----------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 397 (462)
.. -.|+ ...+..+...+...|++++|++.++++.. +.+...+..+...+...|++ +.|++.+++
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~-~~A~~~l~~ 418 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP-RAAENELKK 418 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHH
Confidence 11 0122 23455677888899999999999998743 34577888888899999999 999999999
Q ss_pred HHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 398 LLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 398 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+.+..|+++..+..++..+.+.|++++|..+++++++..+.
T Consensus 419 al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 419 AEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999998865543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-18 Score=169.29 Aligned_cols=355 Identities=12% Similarity=-0.008 Sum_probs=279.1
Q ss_pred HHhCCCchhHHHHHHHHHHCC--CCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChh
Q 012504 76 YAKTSCSIESIKLFDEMLKTG--LRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEID 153 (462)
Q Consensus 76 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (462)
+.+..+|+.---.|....++- -.-+..-...++..+.+.|+++.|..+++..+...+.+ ...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHH
Confidence 345556655444444432220 11133345566777889999999999999999886554 444555667777899999
Q ss_pred HHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHH
Q 012504 154 VAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVV 230 (462)
Q Consensus 154 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 230 (462)
+|...|+++.. | +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999873 3 56788888999999999999999999998852 34566788889999999999999999998877
Q ss_pred hCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012504 231 NGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISF 306 (462)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 306 (462)
... .+...+..+ ..+...|++++|...++.+.+.+ ...+..+...+...|++++|...++++.... +.+...+
T Consensus 173 ~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 652 333344333 34788999999999999876532 3344556778899999999999999999864 2356677
Q ss_pred HHHHHHhhccCcHHH----HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH
Q 012504 307 SAILSACSHLGLVDE----GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFLGA 380 (462)
Q Consensus 307 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 380 (462)
..+...+...|++++ |...++++... .+.+...+..+...+.+.|++++|...+++... .| +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888889999999885 89999999863 234578899999999999999999999998743 33 46677778899
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+...|++ +.|...++++.+..|+++..+..++.++...|++++|+..|+...+..+.
T Consensus 328 l~~~G~~-~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 328 LRQVGQY-TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHCCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999 99999999999999998876777888999999999999999998876554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-17 Score=165.16 Aligned_cols=413 Identities=10% Similarity=-0.050 Sum_probs=268.5
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHhhhhh--------cCCHHHHHHHhccCCC-CC--CcccHHHH-HH
Q 012504 7 ETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSL--------SISLHFTRSLFNNLPV-TP--PLFAYNTL-IR 74 (462)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--------~~~~~~A~~~~~~~~~-~~--~~~~y~~l-i~ 74 (462)
..+|...++.+.|.++++++.+.... +..++..+. .. |.+.+.|.+.++ ... .| +....... .+
T Consensus 115 ~~~La~i~~~~kA~~~ye~l~~~~P~-n~~~~~~la--~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~r 190 (987)
T PRK09782 115 ERSLAAIPVEVKSVTTVEELLAQQKA-CDAVPTLRC--RSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQ 190 (987)
T ss_pred HHHHHHhccChhHHHHHHHHHHhCCC-ChhHHHHHH--HHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHH
Confidence 33344447777777788887766422 222332222 22 556666666665 221 13 34444444 78
Q ss_pred HHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhh-hcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChh
Q 012504 75 AYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR-CLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEID 153 (462)
Q Consensus 75 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (462)
.|.+.|++++|++++.++.+.++. +..-...+-.++.. .++ +.+..+++. .++.+...+..++..|.+.|+.+
T Consensus 191 lY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~ 264 (987)
T PRK09782 191 RAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKA 264 (987)
T ss_pred HHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHH
Confidence 888899999999999999887533 34445556666666 355 666666442 33457778889999999999999
Q ss_pred HHHHHHhcCCC-----CChhh------------------------------HHHHHHH----------------------
Q 012504 154 VAKAVFEEMPV-----RDVVS------------------------------WSSMIAG---------------------- 176 (462)
Q Consensus 154 ~A~~~~~~~~~-----~~~~~------------------------------~~~l~~~---------------------- 176 (462)
+|.++++++.. |+..+ .-.++..
T Consensus 265 ~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (987)
T PRK09782 265 RLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEM 344 (987)
T ss_pred HHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchH
Confidence 99999988751 00000 0000111
Q ss_pred -----------------------------------------HHcCCChhHHHHHHHHhHHC-C-CCC-------------
Q 012504 177 -----------------------------------------FVACDSPSDALKVFHRMKLA-N-ESP------------- 200 (462)
Q Consensus 177 -----------------------------------------~~~~~~~~~a~~~~~~m~~~-~-~~p------------- 200 (462)
..+.|+.++|.++|+..... + ..+
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 12234444555544443321 0 001
Q ss_pred ---------------------------------------------------CHHHHHHHHHHHhcccchHhHHHHHHHHH
Q 012504 201 ---------------------------------------------------NSVTLVSLVSACTSLINVRAGESIHSYAV 229 (462)
Q Consensus 201 ---------------------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 229 (462)
+...+..+..++.. ++.++|...+.+..
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al 503 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE 503 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH
Confidence 12222222222222 34445555555544
Q ss_pred HhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012504 230 VNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFS 307 (462)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 307 (462)
... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|++++|...+++..+.+ +++...+.
T Consensus 504 ~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~ 580 (987)
T PRK09782 504 QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYW 580 (987)
T ss_pred HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHH
Confidence 442 3333333344455678888888888877653 334456666777888888888888888888764 22223333
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHG 385 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 385 (462)
.+.......|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++... +.+...+..+..++...|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 3334445569999999999998853 56788888999999999999999999988743 345677788888999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+. ++|...++++.+..|+++..+..++.++...|++++|+..+++..+..+
T Consensus 658 ~~-eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 658 DI-AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99 9999999999999999999999999999999999999999999887654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-17 Score=164.18 Aligned_cols=395 Identities=9% Similarity=-0.041 Sum_probs=295.4
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCC--CCCcccHHHHHHHHHhCCC
Q 012504 5 HIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPV--TPPLFAYNTLIRAYAKTSC 81 (462)
Q Consensus 5 ~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~--~~~~~~y~~li~~~~~~g~ 81 (462)
++.+++.-.|+.++|.+++....... ..+...+..+. .....|++++|.+++++.-. +.+...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 56778888899999999999988632 22332344443 45677799999999998422 1456678888899999999
Q ss_pred chhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhc
Q 012504 82 SIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEE 161 (462)
Q Consensus 82 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 161 (462)
+++|+..++++.+... .+.. +..+..++...|+.+.|...++++.+..+. +...+..+..++...+..+.|++.++.
T Consensus 99 ~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 9999999999988632 2445 777888889999999999999999998633 555666788888899999999999998
Q ss_pred CCCCChh--------hHHHHHHHHHc-----CCCh---hHHHHHHHHhHHC-CCCCCHH-HHH----HHHHHHhcccchH
Q 012504 162 MPVRDVV--------SWSSMIAGFVA-----CDSP---SDALKVFHRMKLA-NESPNSV-TLV----SLVSACTSLINVR 219 (462)
Q Consensus 162 ~~~~~~~--------~~~~l~~~~~~-----~~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~l~~~~~~~~~~~ 219 (462)
... ++. ....++..... .+++ ++|+..++.+.+. ...|+.. .+. ..+.++...|+.+
T Consensus 176 ~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 176 ANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 875 211 22223333222 2233 7788899888754 2233321 111 1133455779999
Q ss_pred hHHHHHHHHHHhCCC-chHhHHHHHHHHHHhcCChHHHHHHHhhccCCC-------hhhHHHHHHHHHHcCChHHHHHHH
Q 012504 220 AGESIHSYAVVNGLE-LDVALGTALVEMYSKCGHVEKAFKVFNLMREKN-------LQSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
+|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++.+.+ ......+..++...|++++|...+
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999987632 222 22335788999999999999999986532 234566777889999999999999
Q ss_pred HHHHHCCC-----------CCCH---HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 292 AKMIQTGL-----------KPDS---ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 292 ~~m~~~~~-----------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
+++..... .|+. ..+..+...+...|++++|+..++++.. ..+.+...+..+...+...|++++
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99987531 1232 2445666778899999999999999986 445568889999999999999999
Q ss_pred HHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 358 AYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 358 A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
|++.++++.. .|+ ...+......+...|++ +.|+.+++.+++..|+++.+
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~-~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEW-RQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCCHHH
Confidence 9999999754 354 66777777789999999 99999999999999999843
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-17 Score=160.32 Aligned_cols=350 Identities=10% Similarity=-0.033 Sum_probs=250.3
Q ss_pred CCHHHHHHHhccCC-CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHH
Q 012504 48 ISLHFTRSLFNNLP-VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSL 126 (462)
Q Consensus 48 ~~~~~A~~~~~~~~-~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 126 (462)
|+++.|...|++.- ..|+...|..+..+|.+.|++++|++.++..++.... +...+..+..++...|++++|...+..
T Consensus 141 ~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36666666665532 2255556666666666666677776666666654211 334555566666666666666544332
Q ss_pred HHHhC----------------------------C-CCccchHhHH------------------------------HHHH-
Q 012504 127 IFKVG----------------------------L-DSDKYIGNTL------------------------------LRMY- 146 (462)
Q Consensus 127 ~~~~~----------------------------~-~~~~~~~~~l------------------------------~~~~- 146 (462)
+...+ . +++...+..+ +...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 21110 0 0110000000 1100
Q ss_pred -----HhcCChhHHHHHHhcCCCC------ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhc
Q 012504 147 -----AACKEIDVAKAVFEEMPVR------DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN-SVTLVSLVSACTS 214 (462)
Q Consensus 147 -----~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 214 (462)
...+++++|.+.|+..... ....|+.+...+...|++++|+..|++.... .|+ ...|..+...+..
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHH
Confidence 1235788899999877632 3457888888899999999999999999875 454 5678888888999
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHH
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
.|++++|...++++.+.. +.+..++..+..++...|++++|...|++..+. +...+..+...+.+.|++++|+..|
T Consensus 378 ~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999998875 556788999999999999999999999998753 4567888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hh-------HHHHHHHHHHhcCCHHHHHHHHH
Q 012504 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-ME-------HYGCMVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 292 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~~~~~~A~~~~~ 363 (462)
++..... +.+...+..+...+...|++++|...|++.... .|+ .. .++.....+...|++++|.++++
T Consensus 457 ~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 457 RRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9998752 334678888899999999999999999998753 232 11 11222223445799999999999
Q ss_pred hCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 364 NMP-TEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 364 ~~~-~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+.. ..| +...+..+...+...|++ ++|...|+++.++.+...
T Consensus 533 kAl~l~p~~~~a~~~la~~~~~~g~~-~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 533 KALIIDPECDIAVATMAQLLLQQGDV-DEALKLFERAAELARTEG 576 (615)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHhccHH
Confidence 863 234 455788899999999999 999999999999877644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-16 Score=151.64 Aligned_cols=418 Identities=9% Similarity=-0.037 Sum_probs=279.5
Q ss_pred cChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCccc-HHHH--HHHHHhCCCchhHHHHH
Q 012504 14 KTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFA-YNTL--IRAYAKTSCSIESIKLF 89 (462)
Q Consensus 14 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~-y~~l--i~~~~~~g~~~~a~~~~ 89 (462)
|++..|...+++..+....-...++ .++ +....|+.++|+..+++... |+... +..+ ...+...|++++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6777888888777765432222233 444 33445688888888877764 43333 3333 34666678888888888
Q ss_pred HHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--C-C
Q 012504 90 DEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--R-D 166 (462)
Q Consensus 90 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~ 166 (462)
+++.+..+. ++..+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++.++++.. | +
T Consensus 126 ~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 126 QSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 888776433 35555566666777788888888887777663 3444444444444445556557888877763 3 4
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHH------HHHHHHHH-----hcccchHh---HHHHHHHHHHh-
Q 012504 167 VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVT------LVSLVSAC-----TSLINVRA---GESIHSYAVVN- 231 (462)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~~l~~~~-----~~~~~~~~---a~~~~~~~~~~- 231 (462)
...+..+.....+.|-...|.++..+-... +.+...- ....++.- ....++.. +..-++.+...
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 556677777777778777777666553321 1111110 11111110 01122333 33334444331
Q ss_pred -CCCchHhHH----HHHHHHHHhcCChHHHHHHHhhccCCC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC----
Q 012504 232 -GLELDVALG----TALVEMYSKCGHVEKAFKVFNLMREKN----LQSWTIMISGLADNGRGNYAISLFAKMIQTG---- 298 (462)
Q Consensus 232 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---- 298 (462)
..++....| --.+-++...|++.++++.|+.+..++ ..+-..+..+|...+++++|..+++++....
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 112222222 233556778899999999999998543 2455677899999999999999999987642
Q ss_pred -CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC----------CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012504 299 -LKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN----------IKPT---MEHYGCMVDMLGRAGLIEEAYHIIRN 364 (462)
Q Consensus 299 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 364 (462)
..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..+...|+..+|++.+++
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 122333457788899999999999999999987311 0122 23445567788899999999999999
Q ss_pred CCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 365 MPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 365 ~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+.. +-|......+...+...|.+ ..|+..++.+..+.|++..+....+.++...|++++|..+.+.+.+..++
T Consensus 442 l~~~aP~n~~l~~~~A~v~~~Rg~p-~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 442 LSSTAPANQNLRIALASIYLARDLP-RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 843 45788888899999999999 99999999999999999999999999999999999999998777655443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-15 Score=149.83 Aligned_cols=263 Identities=8% Similarity=0.069 Sum_probs=213.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
+...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44566677766665 7888899988887764 466655445555667899999999999997654 444555667788
Q ss_pred HHHhcCChHHHHHHHhhccCCChhhHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHH
Q 012504 246 MYSKCGHVEKAFKVFNLMREKNLQSWTI---MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEG 322 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 322 (462)
++.+.|++++|...++...+.++..... +.......|++++|...+++..+. .|+...+..+..++.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 8999999999999999888654433333 333444559999999999999985 56778889999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 323 KNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+..+++.... -+.+...+..+..++...|++++|++.+++... +.+...+..+..++...|++ +.|...++++.+
T Consensus 629 ~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~-~eA~~~l~~Al~ 705 (987)
T PRK09782 629 VSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM-AATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHh
Confidence 9999999863 234477888899999999999999999998743 34678889999999999999 999999999999
Q ss_pred cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 401 LEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 401 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
..|+...+....++...+..+++.|.+-++.....++.
T Consensus 706 l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 706 DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999988877655544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-15 Score=148.99 Aligned_cols=393 Identities=11% Similarity=-0.003 Sum_probs=285.2
Q ss_pred hhhhHhhhhhcCCHHHHHHHhccCCCC-CCcc-cHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcch-HHHH--HHHh
Q 012504 37 IISRFILTSLSISLHFTRSLFNNLPVT-PPLF-AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFT-YPFV--VKAC 111 (462)
Q Consensus 37 ~~~~ll~~~~~~~~~~A~~~~~~~~~~-~~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~l--l~~~ 111 (462)
.|...+.....|+++.|+..|++.... |+.. ....++..+...|+.++|+..+++.. .|+... +..+ ...+
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly 112 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHH
Confidence 344444334556999999999887643 5542 23388888899999999999999988 333333 3333 4467
Q ss_pred hhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChh--hHHHHHHHHHcCCChhHHHHH
Q 012504 112 GRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVV--SWSSMIAGFVACDSPSDALKV 189 (462)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~ 189 (462)
...|++++|.++++.+.+..+. ++..+..++..+...++.++|++.++++...++. .+..++..+...++..+|++.
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHH
Confidence 7889999999999999998643 4667778888999999999999999999865443 343333334445666669999
Q ss_pred HHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH------HHHHHHH---H--hcCC---hHH
Q 012504 190 FHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG------TALVEMY---S--KCGH---VEK 255 (462)
Q Consensus 190 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~~---~~~ 255 (462)
++++.+.. +.+...+..+..+..+.|-...|.++..+-...- .+....+ ...+..- . ...+ .+.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99999864 3466777888889999999888887766543221 1111111 1111110 0 1112 344
Q ss_pred HHHHHhhccC---CCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 012504 256 AFKVFNLMRE---KNL-------QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 256 a~~~~~~~~~---~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
|+.-++.+.. +++ .+..-.+-++...+++.++++.++.+...|.+....+-..+..+|...+.+++|+.+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 5555555443 222 122234567888999999999999999988766667888899999999999999999
Q ss_pred HHHHHHhcC----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C---------------CCH-HHHHHHHHHHHHc
Q 012504 326 FDEMARVYN----IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-E---------------PNA-VILRSFLGACRNH 384 (462)
Q Consensus 326 ~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~---------------~~~-~~~~~l~~~~~~~ 384 (462)
|+.+....+ .+++......|.-+|...+++++|..+++.+.. . |+- .....++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 999976421 123444467889999999999999999998843 1 222 2344556778899
Q ss_pred CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 385 GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 385 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
|+. ..|++.++++....|.++.....++.++...|...+|.+.++......+
T Consensus 430 gdl-~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 430 NDL-PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred CCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 999 9999999999999999999999999999999999999999987766543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-14 Score=125.13 Aligned_cols=391 Identities=13% Similarity=0.099 Sum_probs=240.8
Q ss_pred hhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcC--CHH-------------------------HHHHHhccCCCC
Q 012504 12 LSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSI--SLH-------------------------FTRSLFNNLPVT 63 (462)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~--~~~-------------------------~A~~~~~~~~~~ 63 (462)
+++.+..+.-+++.|.+.|.+.+..+--.|+ +...|. ++- -|.-+|+-.|
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P-- 204 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP-- 204 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC--
Confidence 3478888888999999999999999888887 333333 111 1222233333
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHH
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLL 143 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (462)
.+..+|..||.++++-...+.|.++|++......+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 3555677777777777667777777777666656666677777666533222 256666677666777777777777
Q ss_pred HHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHh-HH
Q 012504 144 RMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRA-GE 222 (462)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~ 222 (462)
.+..+.|+++.|.+ .|.+++.+|++.|+.|...+|..++..+++.++..+ +.
T Consensus 281 ~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 281 SCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 66666666655433 345667777778888888888777777777666533 44
Q ss_pred HHHHHHHHh----CC----CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC--------C---hhhHHHHHHHHHHcCC
Q 012504 223 SIHSYAVVN----GL----ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK--------N---LQSWTIMISGLADNGR 283 (462)
Q Consensus 223 ~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---~~~~~~l~~~~~~~~~ 283 (462)
.++.++... .+ +.+...|...+..|.+..+.+-|.++-.-+... + ..-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 444444432 11 223445566677777777777777766655431 1 1235566677777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-CH-------
Q 012504 284 GNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG-LI------- 355 (462)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~------- 355 (462)
.+.....++.|.-.-+-|+..+...++++....+.++-.-++|..+..- |...+...-.-+...+++.. +.
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 7888888888877767777777777888777777777777777777653 43333333333333333322 11
Q ss_pred -HH-----HHHHHHh-------CC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCCCchHH---HHHHH
Q 012504 356 -EE-----AYHIIRN-------MP-TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE---PELGANYV---LAASV 415 (462)
Q Consensus 356 -~~-----A~~~~~~-------~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~---~l~~~ 415 (462)
.. |..+++. +. .+-.....+...-.+.+.|.. ++|-+++....+.+ |..+ ..+ .+...
T Consensus 493 l~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~-qkA~e~l~l~~~~~~~ip~~p-~lnAm~El~d~ 570 (625)
T KOG4422|consen 493 LQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRT-QKAWEMLGLFLRKHNKIPRSP-LLNAMAELMDS 570 (625)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchH-HHHHHHHHHHHhcCCcCCCCc-chhhHHHHHHH
Confidence 00 1111111 11 123445566666667788888 88888888876543 4333 333 34444
Q ss_pred HhhcCCHHHHHHHHHHHhcCCCc
Q 012504 416 SSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
-.+.+..-.|...++-|...+..
T Consensus 571 a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 571 AKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHhcCCHHHHHHHHHHHHHcCch
Confidence 45667777888888877665544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-14 Score=134.61 Aligned_cols=269 Identities=12% Similarity=0.036 Sum_probs=170.9
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHC---CCCCCH------HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCch
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLA---NESPNS------VTLVSLVSACTSLINVRAGESIHSYAVVNGLELD 236 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 236 (462)
.+...|.+...+...|++.+|...|...... ...+|. .+-..+....-..++.+.|.+.|..+.+.. +.-
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~Y 529 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGY 529 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chh
Confidence 3444555555555555555555555554433 111121 122233334444455555555555555542 222
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQT-GLKPDSISFSAILSA 312 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~ 312 (462)
+..|-.++......+...+|...+....+ .++..+..+...+.....+..|.+-|+...+. ...+|+++...|...
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 33333333333334555566666665543 35556666666777777777777766665544 123566666666654
Q ss_pred hhc------------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHH
Q 012504 313 CSH------------LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE--PNAVILRSFL 378 (462)
Q Consensus 313 ~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~l~ 378 (462)
|.. .+..+.|+++|.++.+ .-+.|...-+-+.-.++..|++.+|..+|..+... ....+|-.+.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNla 687 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLA 687 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHH
Confidence 432 3456788888888876 44566777788888889999999999999888642 3567888899
Q ss_pred HHHHHcCChHHHHHHHHHHHHhc--CCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKL--EPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+|...|++ ..|.++|+...+. ..+++.+...|+.++.+.|.+.+|.+.+.......+.
T Consensus 688 h~~~e~~qy-~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 688 HCYVEQGQY-RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 999999999 9999999998874 3456678889999999999999999988877665543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-14 Score=124.57 Aligned_cols=399 Identities=12% Similarity=0.080 Sum_probs=271.9
Q ss_pred hhHHHHHHHHHHHhCCCCchhhhhhHh--hhhhcCCHHHHHHHh----ccCCCC---CCcccHHHHHHHHHhCCCchhHH
Q 012504 16 VHHLHQLHTLFLKTSLDHNTCIISRFI--LTSLSISLHFTRSLF----NNLPVT---PPLFAYNTLIRAYAKTSCSIESI 86 (462)
Q Consensus 16 ~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~~~~~A~~~~----~~~~~~---~~~~~y~~li~~~~~~g~~~~a~ 86 (462)
..+|...++.+++...-|+.....--+ +.-...++.+|.+++ ++.|.- --....+.+.-.|.+.|.++.|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 456667777777766666665443333 111112667777665 344321 11234555566788899999999
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccc--------hHhHHHHHHHhcCCh------
Q 012504 87 KLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKY--------IGNTLLRMYAACKEI------ 152 (462)
Q Consensus 87 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~------ 152 (462)
..|+...+. .|+..+--.++-++.-.|+-++..+.|..|+.....||.. .-..|+.--.+...+
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 999998875 5777665566666677899999999999988754333222 112233322222221
Q ss_pred -----hHHHHHHhcCC----CCChh-------------hHHH--------HHHHHHcCCChhHHHHHHHHhHHCCCCCCH
Q 012504 153 -----DVAKAVFEEMP----VRDVV-------------SWSS--------MIAGFVACDSPSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 153 -----~~A~~~~~~~~----~~~~~-------------~~~~--------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 202 (462)
++++-.--++. .|+-. .+.. -...+.+.|+++.|+++++-+.+..-+.-+
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 22221111221 22110 0111 123478899999999998877654322111
Q ss_pred HHHHHH--H----------------------------------HHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHH
Q 012504 203 VTLVSL--V----------------------------------SACTSLINVRAGESIHSYAVVNGLELDVALGTALVEM 246 (462)
Q Consensus 203 ~~~~~l--~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (462)
..-+.| + +.....|++++|...|++.+...-......|| +.-.
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt 533 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLT 533 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hccc
Confidence 111111 0 01123578888888888888765333333444 4555
Q ss_pred HHhcCChHHHHHHHhhcc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 012504 247 YSKCGHVEKAFKVFNLMR---EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGK 323 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 323 (462)
+-..|++++|++.|-++. ..+..+.-.+...|-...+..+|++++.+.... ++.|+.....|...|-+.|+-.+|.
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhh
Confidence 778899999999988776 357777788888999999999999998877664 5557788999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhc
Q 012504 324 NYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP-TEPNAVILRSFLGAC-RNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~~~a~~~~~~~~~~ 401 (462)
+.+-.--+ -++.+..+...|..-|....-+++++.+|++.. .+|+..-|..++..| .+.|++ +.|..+++...+.
T Consensus 613 q~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgny-qka~d~yk~~hrk 689 (840)
T KOG2003|consen 613 QCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNY-QKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHh
Confidence 88766554 567789999999999999999999999999874 479999999888766 578999 9999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCC
Q 012504 402 EPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 402 ~p~~~~~~~~l~~~~~~~g~ 421 (462)
.|.+..++..|.+.+...|.
T Consensus 690 fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccchHHHHHHHHHhccccc
Confidence 99999999999998887775
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-14 Score=130.96 Aligned_cols=330 Identities=15% Similarity=0.107 Sum_probs=239.1
Q ss_pred hhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhc---CCCCChhhHHHHHHHHHcCCChhHHH
Q 012504 111 CGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEE---MPVRDVVSWSSMIAGFVACDSPSDAL 187 (462)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (462)
+.-.|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-- +...|...|..+.....+.|++++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334488888888888888775 34666778888888888888887766543 33456777888888888888888888
Q ss_pred HHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH----HHHHHHHHhcCChHHHHHHHhhc
Q 012504 188 KVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG----TALVEMYSKCGHVEKAFKVFNLM 263 (462)
Q Consensus 188 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~ 263 (462)
-+|.+..+.. +++...+..-...|-+.|+...|...+.++.....+.+..-+ ...+..+...++-+.|.+.+...
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8888887763 445555555666777888888888888888776532232222 23455566666667777777766
Q ss_pred cC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---------------------------CCCCCHHHHHHHHH
Q 012504 264 RE-----KNLQSWTIMISGLADNGRGNYAISLFAKMIQT---------------------------GLKPDSISFSAILS 311 (462)
Q Consensus 264 ~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------------------~~~p~~~~~~~ll~ 311 (462)
.. -+...++.++..|.+...++.+......+... ++.++...+ .+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhh
Confidence 54 23456777888888888888888777776651 122222221 2223
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCC
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKP--TMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE---PNAVILRSFLGACRNHGQ 386 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 386 (462)
++.+.+..+....+...+... .+.| +...|..+.++|...|++.+|+.+|..+... .+...|..+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 344555555555555655554 5444 4788999999999999999999999998654 246689999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCCccce
Q 012504 387 VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSW 445 (462)
Q Consensus 387 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 445 (462)
. +.|.+.+++++...|++.++...|+..+.+.|+.++|.++++.+.-.+....++..|
T Consensus 465 ~-e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 465 Y-EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred H-HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9 999999999999999999999999999999999999999999887444333344444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.1e-17 Score=144.11 Aligned_cols=256 Identities=14% Similarity=0.080 Sum_probs=112.0
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 012504 172 SMIAGFVACDSPSDALKVFHRMKLANESPNS-VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC 250 (462)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 250 (462)
.+...+.+.|++++|++++++......+|+. ..+..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 3455667778888888888654443223433 334445555667788888888888888765 3356667777777 688
Q ss_pred CChHHHHHHHhhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 012504 251 GHVEKAFKVFNLMRE--KNLQSWTIMISGLADNGRGNYAISLFAKMIQTG-LKPDSISFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 251 ~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
+++++|.+++....+ +++..+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 889999888877643 456677788888999999999999999987643 34567778888888999999999999999
Q ss_pred HHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 328 EMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 328 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
+..+. .| |......++..+...|+.+++.++++.... +.++..+..+..++...|+. +.|..+++++.+..|+
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~-~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY-EEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H-HHHHHHHHHHHHHSTT
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc-cccccccccccccccc
Confidence 99874 45 477888899999999999998777776632 34556778899999999999 9999999999999999
Q ss_pred CCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 405 LGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
|+.....++.++...|+.++|.++.++.-
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-13 Score=127.16 Aligned_cols=382 Identities=11% Similarity=0.024 Sum_probs=225.6
Q ss_pred CHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCC--CCcchHHHHHHHhhhhcCchhHHHHH
Q 012504 49 SLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLR--PDNFTYPFVVKACGRCLLIGIGGSVH 124 (462)
Q Consensus 49 ~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~ 124 (462)
.+..+..++.+.- ..-++...+.|.+.|.-.|++..++.+...+...... .-...|-.+.+++...|++++|..+|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4555555554432 1157778888999999999999999999998875311 12345778888999999999999999
Q ss_pred HHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCC----ChhHHHHHHHHhHHCC
Q 012504 125 SLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACD----SPSDALKVFHRMKLAN 197 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~ 197 (462)
-+..+....--...+-.|...+.+.|+++.+...|+.+.. .+..+...|...|...+ ..+.|..++.+..+.-
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 8877764332234556788999999999999999999873 24566667777776664 4566777776666542
Q ss_pred CCCCHHHHHHHHHHHhcccchHhHHHHHHH----HHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC-------
Q 012504 198 ESPNSVTLVSLVSACTSLINVRAGESIHSY----AVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK------- 266 (462)
Q Consensus 198 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 266 (462)
+.|...|..+...+....-+ .+...+.. +...+-++.+...|.+...+...|++++|...|......
T Consensus 411 -~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred -cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 44666776666665443333 33554443 334555677788888888888888888888888766521
Q ss_pred Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHH--------
Q 012504 267 NL------QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEGKNYFDEMAR-------- 331 (462)
Q Consensus 267 ~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~-------- 331 (462)
+. .+--.+...+-..++++.|.+.|...... .|+-. .|..++......+...+|...++....
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a 566 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA 566 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH
Confidence 11 11222334444445555555555555543 22221 222222122223444444444444443
Q ss_pred --------------------------hcCCCCchhHHHHHHHHHHh------------cCCHHHHHHHHHhCCC--CCCH
Q 012504 332 --------------------------VYNIKPTMEHYGCMVDMLGR------------AGLIEEAYHIIRNMPT--EPNA 371 (462)
Q Consensus 332 --------------------------~~~~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~--~~~~ 371 (462)
.....+|..+.-.|...|.+ .+..++|+++|..+.. +.+.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 21222333333333333221 1234455555554422 2234
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
..-+.+..+++..|++ ..|..+|.++.+-..+.+.+|..++.+|..+|+|..|++.|+...++
T Consensus 647 yAANGIgiVLA~kg~~-~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRF-SEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred hhccchhhhhhhccCc-hHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555666 66666666655544445556666666666666666666666654443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.9e-12 Score=113.82 Aligned_cols=429 Identities=8% Similarity=0.019 Sum_probs=311.4
Q ss_pred HHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccC-------CC----------------C
Q 012504 8 TLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNL-------PV----------------T 63 (462)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~-------~~----------------~ 63 (462)
..|.....++.|+.++....+. ++.+..+|-.-- +-...|+.+...+++++- +. .
T Consensus 414 lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 3444455678888888877654 455555554443 334445555555555332 00 0
Q ss_pred CCccc---------------------HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHH
Q 012504 64 PPLFA---------------------YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGS 122 (462)
Q Consensus 64 ~~~~~---------------------y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 122 (462)
.++.| |+.-...|.+.+.++-|..+|...++-- +-+...|......=-..|..+....
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHH
Confidence 22223 3333333444555555666666665532 2244455544444445677777777
Q ss_pred HHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCC
Q 012504 123 VHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANES 199 (462)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 199 (462)
+++.++..- +-....|-.....+-..|++..|..++...-+ .+...|..-+..-....++++|..+|.+.... .
T Consensus 572 llqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 572 LLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 777777663 33445556666667778888888888877653 35667888888888889999999999888774 5
Q ss_pred CCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHHHHH
Q 012504 200 PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTIMIS 276 (462)
Q Consensus 200 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~ 276 (462)
|+...|..-+..-.-.+..++|.+++++.++.- +.-...|..+.+.+-+.++.+.|.+.|..-.+ | .+..|-.+..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 777777666666666788999999998888763 55567888889999999999999988887665 3 3467888878
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHH
Q 012504 277 GLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIE 356 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (462)
.--+.|++-.|..++++.+-++.. +...|...++.-.+.|..+.|..++.+..+ ..+.+...|..-|....+.++-.
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccch
Confidence 778888999999999999887643 677888889999999999999999999887 56677888888888888888877
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 357 EAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 357 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.....+++... |+.+.-.+...+....++ +.|...|+++.+.+|+..++|.-+-..+.+.|.-++-.+++.......
T Consensus 805 ks~DALkkce~--dphVllaia~lfw~e~k~-~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 805 KSIDALKKCEH--DPHVLLAIAKLFWSEKKI-EKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHhccC--CchhHHHHHHHHHHHHHH-HHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 88888887763 556666777888888999 999999999999999999999999999999999999999999887654
Q ss_pred CccCCccceEEECC
Q 012504 437 LNKVPGCSWVKVND 450 (462)
Q Consensus 437 ~~~~~~~~~~~~~~ 450 (462)
|..+..|.-+.+
T Consensus 882 --P~hG~~W~avSK 893 (913)
T KOG0495|consen 882 --PTHGELWQAVSK 893 (913)
T ss_pred --CCCCcHHHHHhh
Confidence 455666655543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-13 Score=127.14 Aligned_cols=218 Identities=11% Similarity=-0.034 Sum_probs=140.7
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchH-------hHHHHHHHHHH
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDV-------ALGTALVEMYS 248 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 248 (462)
.+...|+++.|...++++.+.. +-+......+...+.+.|+++++..++..+.+.+..++. ..|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554444432 223334444444444555555555555555444322111 12223333333
Q ss_pred hcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 012504 249 KCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
...+.+...++++.+.+ .++.....+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHH
Confidence 44455666666666643 46677788888888999999999999888874 4444222 23344456888889998
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 326 FDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.+...+ ..+-|+..+..+.+.+.+.+++++|.+.|+.... .|+...+..+...+...|+. ++|.+++++...+
T Consensus 317 ~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~-~~A~~~~~~~l~~ 390 (398)
T PRK10747 317 LRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKP-EEAAAMRRDGLML 390 (398)
T ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhh
Confidence 888886 3345567788888999999999999999988754 58888888888899999999 9999999888764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-13 Score=116.65 Aligned_cols=354 Identities=16% Similarity=0.090 Sum_probs=244.2
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC-cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCc-cchHhHHHHHH
Q 012504 69 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSD-KYIGNTLLRMY 146 (462)
Q Consensus 69 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 146 (462)
+-....-|.++|++++|++.|.+.++ ..|| +..|.....+|...|+++++.+.-...++.+ |+ ...+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 34455678889999999999999988 4678 7788888888999999999887766666543 32 22334444455
Q ss_pred HhcCChhHHHH----------------------HHhc---------CC---C---CChhhHHHHHHHHHc----------
Q 012504 147 AACKEIDVAKA----------------------VFEE---------MP---V---RDVVSWSSMIAGFVA---------- 179 (462)
Q Consensus 147 ~~~~~~~~A~~----------------------~~~~---------~~---~---~~~~~~~~l~~~~~~---------- 179 (462)
-..|++++|+. +++. +. . |+.....+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 55566555432 1111 01 1 111111111111100
Q ss_pred ---------------CC---ChhHHHHHHHHhHH---CCCCC---CH------HHHHHHHHHHhcccchHhHHHHHHHHH
Q 012504 180 ---------------CD---SPSDALKVFHRMKL---ANESP---NS------VTLVSLVSACTSLINVRAGESIHSYAV 229 (462)
Q Consensus 180 ---------------~~---~~~~a~~~~~~m~~---~~~~p---~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 229 (462)
.+ .+.+|...+.+-.. ..... |. .+...-...+.-.|+.-.+..-++..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 01 12222222221100 00001 11 111111122334577788888888888
Q ss_pred HhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHH
Q 012504 230 VNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSIS 305 (462)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~ 305 (462)
+... .+...|-.+..+|....+.++.++.|++..+ .|+.+|..-.+.+.-.+++++|..-|++.++. .| +...
T Consensus 354 ~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~ 430 (606)
T KOG0547|consen 354 KLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYA 430 (606)
T ss_pred hcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHH
Confidence 7753 3333477778889999999999999998875 46678888888888999999999999999875 44 4557
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---------CHHHHH
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP---------NAVILR 375 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~---------~~~~~~ 375 (462)
|..+..+..+.+.++++...|++..+ .++..+.+|+...+.+...+++++|.+.|+.... .| .+.+-.
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 77777777889999999999999988 5666789999999999999999999999988632 22 233334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 376 SFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 376 ~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.++..-.+ +++ ..|..+++++.+++|.....+..|+....+.|+.++|+++|++-.
T Consensus 509 a~l~~qwk-~d~-~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 509 ALLVLQWK-EDI-NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hHhhhchh-hhH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444334 889 999999999999999999999999999999999999999998754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-13 Score=124.41 Aligned_cols=275 Identities=9% Similarity=-0.004 Sum_probs=212.8
Q ss_pred cCChhHHHHHHhcCCCC--Chh-hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHH--HHHHHHhcccchHhHHH
Q 012504 149 CKEIDVAKAVFEEMPVR--DVV-SWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLV--SLVSACTSLINVRAGES 223 (462)
Q Consensus 149 ~~~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 223 (462)
.|+++.|++.+...... ++. .|........+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999988876543 233 3333345558899999999999999874 56654333 33567889999999999
Q ss_pred HHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh-----------hhHHHHHHHHHHcCChHHHHHHHH
Q 012504 224 IHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL-----------QSWTIMISGLADNGRGNYAISLFA 292 (462)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~ 292 (462)
.++.+.+.. +.++.....+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999887 66788899999999999999999999999886322 133344444445556666777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-C
Q 012504 293 KMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-N 370 (462)
Q Consensus 293 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~ 370 (462)
.+.+. .+.++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+.... .| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 3446778888899999999999999999998763 4554322 23344456999999999988743 34 4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 371 AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+.....+...|...+++ ++|...|+.+.+..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~-~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEW-QEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677889999999999 999999999999999876 677899999999999999999997644
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-15 Score=131.82 Aligned_cols=257 Identities=12% Similarity=0.059 Sum_probs=90.2
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCC-cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhc
Q 012504 71 TLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAAC 149 (462)
Q Consensus 71 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (462)
.+...+.+.|++++|+++++.......+|+ ...|..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 446677788888888888866544432333 334444444556677888888888888776533 55556666666 677
Q ss_pred CChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCC-CCCCHHHHHHHHHHHhcccchHhHHHHHH
Q 012504 150 KEIDVAKAVFEEMPV--RDVVSWSSMIAGFVACDSPSDALKVFHRMKLAN-ESPNSVTLVSLVSACTSLINVRAGESIHS 226 (462)
Q Consensus 150 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 226 (462)
+++++|.++++..-+ ++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888777766532 355566677777777888888888887765432 23456666677777777888888888888
Q ss_pred HHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 012504 227 YAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS 303 (462)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 303 (462)
+..+.. |.+..+...++..+...|+.+++.+++....+ .++..+..+..+|...|+.++|...|++....+ +.|+
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 877775 44566777777777777777776666655542 355666777777777777777777777776642 2356
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
.....+..++...|+.++|..+..++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6666777777777777777777666543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-13 Score=115.56 Aligned_cols=185 Identities=14% Similarity=0.068 Sum_probs=133.2
Q ss_pred cCChHHHHHHHhhccCCChhhHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 250 CGHVEKAFKVFNLMREKNLQSWTIM---ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
.|++++|.+.|++....|...-.+| .-.+-..|+.++|++.|-++..- +..+......+...|....+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 4667777777777766655433333 33456677888888887776543 2335566677777787788888888888
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 327 DEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM-PT-EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
.+... -++.|+.+...|.+.|-+.|+-..|.+.+-+- .. +-+..+..-|..-|....=+ ++++.+|+++.-++|+
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~-ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFS-EKAINYFEKAALIQPN 658 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHH-HHHHHHHHHHHhcCcc
Confidence 77754 45556888888889999999888888765443 22 33555555565556666556 9999999999999998
Q ss_pred CCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 405 LGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
...-...++.++.+.|++++|+.+|+...++-+.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 8766667778888999999999999998776544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-11 Score=108.03 Aligned_cols=401 Identities=12% Similarity=0.010 Sum_probs=289.0
Q ss_pred HHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCC
Q 012504 20 HQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 97 (462)
Q Consensus 20 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 97 (462)
..|+++.++. ++.++..|.+.+ . ..+.++|+.++.+.-+- .+...| -++++..-++.|..+++..++. +
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAV--e-lE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe~-i 436 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAV--E-LEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKAREI-I 436 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHH--h-ccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-C
Confidence 3444444433 344555665555 2 23444566666554321 222222 3444555566777777777764 5
Q ss_pred CCCcchHHHHHHHhhhhcCchhHHHHHHHHH----HhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC------CCh
Q 012504 98 RPDNFTYPFVVKACGRCLLIGIGGSVHSLIF----KVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV------RDV 167 (462)
Q Consensus 98 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~ 167 (462)
+-+...|.+....=-..|+.+...+++...+ ..|+..+...|-.=...|-..|..-.+..+...... .-.
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 5566667665555566677777777665543 346666666666666666666666666666655541 134
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMY 247 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (462)
.+|+.-...|.+.+.++-|..+|....+- .+-+...|......=-..|..+....+++++...- +.....|......+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 57888888888888888899999888774 23355567666666666788888899999888874 55667777788888
Q ss_pred HhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 012504 248 SKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKN 324 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 324 (462)
...|+...|..++....+. +...|..-+.....+.+++.|..+|.+.... .|+...|..-+..-.-.++.++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 8999999999999888753 4467888888899999999999999998875 5666666665555566789999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 012504 325 YFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~ 402 (462)
++++..+. ++.-...|..+.+.+-+.++.+.|.+.|..-.. -|+ ...|-.|...--+.|+. ..|..++++..-.+
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~-~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL-VRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch-hhHHHHHHHHHhcC
Confidence 99998873 344477888899999999999999999887643 354 56777777777788888 99999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 403 PELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 403 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
|.+...|...+.+-.+.|+.+.|..+..+..+.-
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998877666543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-12 Score=121.72 Aligned_cols=223 Identities=13% Similarity=0.015 Sum_probs=136.1
Q ss_pred HHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhH-------HHHHHHH
Q 012504 174 IAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVAL-------GTALVEM 246 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~ 246 (462)
...+...|+++.|...++.+.+.. +-+......+...+...|+++.+.+.+..+.+.+..+.... +..++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554432 22333444455555555555555555555555443222211 1111111
Q ss_pred HHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHhhccCcHH
Q 012504 247 YSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSIS--F-SAILSACSHLGLVD 320 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~ll~~~~~~~~~~ 320 (462)
-......+...+.++...+ .++..+..+...+...|++++|.+.+++..+.. ||... + ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence 1112223444445555443 367788888888999999999999999988863 33321 1 11112234457788
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRN--M-PTEPNAVILRSFLGACRNHGQVLYLDDNLGKL 397 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 397 (462)
.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+. ++|.+++++
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~-~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDK-AEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Confidence 88888888876422222225667888999999999999999993 3 3468888888999999999999 999999998
Q ss_pred HHh
Q 012504 398 LLK 400 (462)
Q Consensus 398 ~~~ 400 (462)
...
T Consensus 396 ~l~ 398 (409)
T TIGR00540 396 SLG 398 (409)
T ss_pred HHH
Confidence 765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-12 Score=109.53 Aligned_cols=300 Identities=14% Similarity=0.082 Sum_probs=209.9
Q ss_pred cCChhHHHHHHhcCCCCChhh---HHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH------HHHHHHHHHHhcccchH
Q 012504 149 CKEIDVAKAVFEEMPVRDVVS---WSSMIAGFVACDSPSDALKVFHRMKLANESPNS------VTLVSLVSACTSLINVR 219 (462)
Q Consensus 149 ~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~ 219 (462)
+++.++|.+.|-+|.+.|..+ .-+|.+.|.+.|..++|+++-+.+..+ ||. .....|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 466777777777776554443 345667777777777777777776653 222 12334555667777788
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh--------hhHHHHHHHHHHcCChHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL--------QSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+-+. ..|.-+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 8888888777655 44455667788888888888888888777665332 24556666667788899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 012504 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN 370 (462)
Q Consensus 292 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~ 370 (462)
.+..+.+.+ ....-..+.+.....|+++.|.+.|+.+.+. +..--..+...|..+|...|+.++...++.++.. .+.
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 998876432 2223344556778889999999999999876 4444467788899999999999999999988643 345
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh---hcCCHHHHHHHHHHHhcCCCccCCccceEE
Q 012504 371 AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSS---LSGNWDTAAELMVAINQKGLNKVPGCSWVK 447 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 447 (462)
...-..+...-....-. +.|...+.+-++..|.-- .+..++.... .-|+..+-+..++.|+..-++..|.+....
T Consensus 282 ~~~~l~l~~lie~~~G~-~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~ 359 (389)
T COG2956 282 ADAELMLADLIELQEGI-DAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQN 359 (389)
T ss_pred ccHHHHHHHHHHHhhCh-HHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecc
Confidence 55555555544555556 788888888888788755 4444444332 346788888999999988888888888888
Q ss_pred ECCeEEEEe
Q 012504 448 VNDGSAEEM 456 (462)
Q Consensus 448 ~~~~~~~~~ 456 (462)
.+...|.++
T Consensus 360 CGF~a~~l~ 368 (389)
T COG2956 360 CGFTAHTLY 368 (389)
T ss_pred cCCcceeee
Confidence 887777764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-12 Score=117.19 Aligned_cols=278 Identities=10% Similarity=-0.009 Sum_probs=175.6
Q ss_pred HhcCChhHHHHHHhcCCC--CC-hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH--HHHHHHHHHhcccchHhH
Q 012504 147 AACKEIDVAKAVFEEMPV--RD-VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV--TLVSLVSACTSLINVRAG 221 (462)
Q Consensus 147 ~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a 221 (462)
...|+++.|.+.+.+..+ |+ ...+-.......+.|+++.|.+.+.+..+. .|+.. ........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 356777777777766653 22 223344456677778888888888887654 24432 333346667778888888
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHH----HHHHHHHHcCChHHHHHHHHHH
Q 012504 222 ESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWT----IMISGLADNGRGNYAISLFAKM 294 (462)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~~~m 294 (462)
...++.+.+.. |-+..+...+..++...|++++|.+.+..+.+. +...+. ....+....+..++..+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888776 556667778888888888888888888877743 222221 1112223333333334444444
Q ss_pred HHCCC---CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhH-HHHHHHH--HHhcCCHHHHHHHHHhCCC-
Q 012504 295 IQTGL---KPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEH-YGCMVDM--LGRAGLIEEAYHIIRNMPT- 367 (462)
Q Consensus 295 ~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~~~~~~A~~~~~~~~~- 367 (462)
.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... ...++.. ....++.+.+.+.++....
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44321 126667777777888888888888888888764 233221 0012222 2334677777777766532
Q ss_pred CCC-H--HHHHHHHHHHHHcCChHHHHHHHHH--HHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHH
Q 012504 368 EPN-A--VILRSFLGACRNHGQVLYLDDNLGK--LLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 368 ~~~-~--~~~~~l~~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
.|+ + ....++...+.+.|++ ++|.+.|+ ...+..|++. .+..++..+.+.|+.++|.+++++.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~-~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEF-IEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccH-HHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233 3 4556777888888888 88888888 4555666655 4668888888888888888888764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=124.22 Aligned_cols=278 Identities=12% Similarity=0.042 Sum_probs=218.1
Q ss_pred ChhHHHHHHhcCCC--CC-hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCC--CCCHHHHHHHHHHHhcccchHhHHHHH
Q 012504 151 EIDVAKAVFEEMPV--RD-VVSWSSMIAGFVACDSPSDALKVFHRMKLANE--SPNSVTLVSLVSACTSLINVRAGESIH 225 (462)
Q Consensus 151 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~ 225 (462)
+..+|...|+.++. +| ......+..+|...+++++|.++|+.+.+... .-+..+|.+.+-.+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46788889988653 23 34556778899999999999999999977421 1256677777654422 1222222
Q ss_pred -HHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 012504 226 -SYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL---QSWTIMISGLADNGRGNYAISLFAKMIQTGLKP 301 (462)
Q Consensus 226 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 301 (462)
+.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+-|+ .+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 3344433 66789999999999999999999999999987554 67888888889999999999999988753 34
Q ss_pred CHH-HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 012504 302 DSI-SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSF 377 (462)
Q Consensus 302 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l 377 (462)
..+ .|..+...|.++++++.|+-.|+.+. .+.|. ......+...+.+.|+.++|+++++++.. +.++..-..-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 332 56667778999999999999999998 45554 66677788889999999999999999732 3455554455
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
+..+...++. ++|...++++.+..|++..++..++..|.+.|+.+.|+.-|--+-+.++++
T Consensus 564 ~~il~~~~~~-~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRY-VEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcch-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6778899999 999999999999999999999999999999999999999888776655543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-11 Score=103.85 Aligned_cols=413 Identities=11% Similarity=0.068 Sum_probs=293.6
Q ss_pred HhhcChhHHHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCC-CCCCcccHHHHHHHHHhCCCchhHHHHH
Q 012504 11 QLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLP-VTPPLFAYNTLIRAYAKTSCSIESIKLF 89 (462)
Q Consensus 11 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~-~~~~~~~y~~li~~~~~~g~~~~a~~~~ 89 (462)
..+..+..|+.+++..+..=.+.|-.-|..+.+-.+.|++..|+++|++.- -.|+..+|++.|..=.+-+.++.|..+|
T Consensus 118 mknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IY 197 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIY 197 (677)
T ss_pred HhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344677888999998887766667666666656678889999999998754 4499999999999999999999999999
Q ss_pred HHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHh-CC-CCccchHhHHHHHHHhcCChhHHHHHHhcCCC---
Q 012504 90 DEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKV-GL-DSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--- 164 (462)
Q Consensus 90 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 164 (462)
+..+- +.|+..+|.-..+.=.+.|....+..+|+.+++. |- ..+...+.+....=.++..++.|.-+|+-...
T Consensus 198 erfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p 275 (677)
T KOG1915|consen 198 ERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP 275 (677)
T ss_pred HHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99886 4689999988888888899999999999988764 21 11223344444444556777888877765442
Q ss_pred -C-ChhhHHHHHHHHHcCCChhHHHHH--------HHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC
Q 012504 165 -R-DVVSWSSMIAGFVACDSPSDALKV--------FHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE 234 (462)
Q Consensus 165 -~-~~~~~~~l~~~~~~~~~~~~a~~~--------~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (462)
. ....|..+...--+-|+.....+. |+.+.+.+ +-|-.++--.++.-...|+.+...++|+..+..- +
T Consensus 276 k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-p 353 (677)
T KOG1915|consen 276 KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-P 353 (677)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-C
Confidence 1 234454444443444554444333 33344432 4566677777777777899999999999988764 4
Q ss_pred chH--hHHHHHH--------HHHHhcCChHHHHHHHhhccC--C-Chhh----HHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 235 LDV--ALGTALV--------EMYSKCGHVEKAFKVFNLMRE--K-NLQS----WTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 235 ~~~--~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~--~-~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
|-. ..|...| -.-....+.+.+.++|+...+ | ...| |-...+.-.++.+...|.+++...+
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-- 431 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-- 431 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--
Confidence 422 1222222 112346788888888887765 2 2233 4444555667889999999988776
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HH
Q 012504 298 GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNA----VI 373 (462)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~ 373 (462)
|.-|-..+|...|..-.+.++++.+..++++... -.+.+..+|......=...|+.+.|..+|+-+..+|.. ..
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 4578888898888888899999999999999985 33446778888888788899999999999988776643 35
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh-----hcC-----------CHHHHHHHHHHHh
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSS-----LSG-----------NWDTAAELMVAIN 433 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~ 433 (462)
|.+.|..-...|.+ +.|..+++++++..+-.. +|.+.+..-. ..| +...|..+|+...
T Consensus 510 wkaYIdFEi~~~E~-ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEF-EKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhhhhhhhcchH-HHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 56666666778999 999999999998765544 6666665544 334 5667778887654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.3e-12 Score=108.51 Aligned_cols=327 Identities=13% Similarity=0.077 Sum_probs=171.4
Q ss_pred chhhhhhHh-hhhhcCCHHHHHHHhccCCCC---CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHH
Q 012504 34 NTCIISRFI-LTSLSISLHFTRSLFNNLPVT---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVK 109 (462)
Q Consensus 34 ~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 109 (462)
...++..+| .-..|.+.+.|++++++.... -+..+||.+|.+-.-. ...+++.+|....+.||..|||.+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 344555555 112334666666666555432 4555566655543322 12556666666666666666666666
Q ss_pred HhhhhcCchhH----HHHHHHHHHhCCCCccchHhHHHHHHHhcCChhH-HHHHHhcCC------------CCChhhHHH
Q 012504 110 ACGRCLLIGIG----GSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDV-AKAVFEEMP------------VRDVVSWSS 172 (462)
Q Consensus 110 ~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~------------~~~~~~~~~ 172 (462)
+.++.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++. ..|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 66666655433 3455556666666666666666666666555533 222222221 113344555
Q ss_pred HHHHHHcCCChhHHHHHHHHhHHCC----CCCCH---HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 173 MIAGFVACDSPSDALKVFHRMKLAN----ESPNS---VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
.+..|.+..+.+.|.++-.-+.... +.|+. .-|..+....+.....+.....|+.|+-.-.-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 5555555666665555544332210 22221 2344455555555566666666666665555555556666666
Q ss_pred HHHhcCChHHHHHHHhhccCCCh----hhHHHHHHHHHHcC---------------------ChHHHHHHHHHHHHCCCC
Q 012504 246 MYSKCGHVEKAFKVFNLMREKNL----QSWTIMISGLADNG---------------------RGNYAISLFAKMIQTGLK 300 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~---------------------~~~~a~~~~~~m~~~~~~ 300 (462)
+....|.++-.-+++.++..-+- ..-.-+...+++.. -.+.....-.+|+...+
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~- 520 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW- 520 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC-
Confidence 66666666655555555543221 11111122222221 01111122233444333
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 301 PDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 301 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
.....+.++..+.+.|..++|.+++..+.+..+--|- .....-+++.-.+.++...|...++-|.
T Consensus 521 -~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 521 -PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred -ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4445566666678888889999888888654333333 3334456666677788888888888774
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-11 Score=103.77 Aligned_cols=274 Identities=15% Similarity=0.121 Sum_probs=163.2
Q ss_pred cHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCc---cchHhHHHH
Q 012504 68 AYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSD---KYIGNTLLR 144 (462)
Q Consensus 68 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 144 (462)
.|-.-++.+. +.+.++|+++|-+|.+.+.. +..+.-++-+.+.+.|..++|+.+...+.++.--+. ......|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 4544444443 56889999999999875322 344555666778888999999998888776521111 123445666
Q ss_pred HHHhcCChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH----HHHHHHHHHhcccc
Q 012504 145 MYAACKEIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV----TLVSLVSACTSLIN 217 (462)
Q Consensus 145 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~ 217 (462)
-|...|-+|.|+.+|..+.+. -..+...|+..|.+..+|++|+++-+++.+.+-.+... .|..+...+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 777888888888888888753 23456677788888888888888888777765444322 23444444555566
Q ss_pred hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh----hhHHHHHHHHHHcCChHHHHHHHHH
Q 012504 218 VRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL----QSWTIMISGLADNGRGNYAISLFAK 293 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (462)
++.|...+....+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|.+.|+.++....+.+
T Consensus 196 ~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 666666666666554 33334444456666666666666666666665544 2445555666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 012504 294 MIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDML 349 (462)
Q Consensus 294 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (462)
+.+....++ .-..+...-......+.|..++.+-.+. +|+...+..+++.-
T Consensus 275 ~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~ 325 (389)
T COG2956 275 AMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhh
Confidence 665422222 2222222222233334444443333322 46665665555544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-11 Score=104.95 Aligned_cols=285 Identities=13% Similarity=0.077 Sum_probs=162.1
Q ss_pred HHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC------ChhhHHHHHHHHHcCC
Q 012504 108 VKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR------DVVSWSSMIAGFVACD 181 (462)
Q Consensus 108 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~ 181 (462)
..++....+.+++.+-.+.....|.+.+...-+....+.-...|+++|+.+|+++... |..+|..++- .+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhh
Confidence 3445555566666666666666666555555555555555666777777777776642 4445555442 2222
Q ss_pred ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHh
Q 012504 182 SPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFN 261 (462)
Q Consensus 182 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 261 (462)
+.. +..+..-...--+--+.|...+.+-|+-.++.++|...|+..++.+ +....+|+.+..-|....+...|++-++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 111 1111111100012233455666666666667777777777776665 4455666666777777777777777776
Q ss_pred hccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc
Q 012504 262 LMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT 338 (462)
Q Consensus 262 ~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 338 (462)
...+- |-..|-.+.++|.-.+.+.-|+-.|++...- .+-|...+..|..+|.+.++.++|++.|+..... -..+
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte 465 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTE 465 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccc
Confidence 66543 4456666777777777777777777766653 1224556777777777777777777777766652 2334
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC------CCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT------EPNA---VILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
...+..|.+.|-+.++..+|...|+.... ..+. ...--|..-+.+.+++ ++|..+.......
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~-~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF-DEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch-HHHHHHHHHHhcC
Confidence 55666677777777777777666654321 1111 1111233445556666 6555555444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-11 Score=103.43 Aligned_cols=287 Identities=10% Similarity=0.034 Sum_probs=181.0
Q ss_pred CCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHH
Q 012504 79 TSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAV 158 (462)
Q Consensus 79 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 158 (462)
.|+|.+|.++..+-.+.+-.| ...|..-..+..+.|+.+.+-.++.++.+....++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655544332 2233344444555566666666555555543333444444444445555555555444
Q ss_pred HhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCc
Q 012504 159 FEEMP---VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLEL 235 (462)
Q Consensus 159 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (462)
++++. ..++.......++|.+.|++.....++..+.+.|.-.++..- ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence 44333 224444445555555555555555555555554433222210 01
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhcc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMR---EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA 312 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 312 (462)
...+|..+++-....+..+.-...++... +.++..-.+++.-+.+.|+.++|.++.++..+++..|+. . ..-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~-~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---C-RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---H-HHHh
Confidence 12344555555555555555555666665 346777778888899999999999999999998777762 2 2234
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM-PTEPNAVILRSFLGACRNHGQVLYLD 391 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~a 391 (462)
+.+.++.+.-++..+...+.++- ++..+..|...|.+.+.|.+|.+.|+.. ...|+..+|..+..++.+.|+. ..|
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~-~~A 380 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEP-EEA 380 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh-HHH
Confidence 66778888888888877774444 4478888999999999999999999876 4468999999999999999999 999
Q ss_pred HHHHHHHHhc
Q 012504 392 DNLGKLLLKL 401 (462)
Q Consensus 392 ~~~~~~~~~~ 401 (462)
.+..++.+.+
T Consensus 381 ~~~r~e~L~~ 390 (400)
T COG3071 381 EQVRREALLL 390 (400)
T ss_pred HHHHHHHHHH
Confidence 9999988753
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.2e-11 Score=103.49 Aligned_cols=255 Identities=8% Similarity=-0.004 Sum_probs=185.4
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCC--CchHhHHHHHHHHHHhcCCh
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGL--ELDVALGTALVEMYSKCGHV 253 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 253 (462)
++....+.++++.-.+.....|++.+...-+....+.-...|+++|+.+|+++.+... -.|..+|..++-+-..+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 4444455666666666666666544444444444444566677777777777776631 11345555444322221111
Q ss_pred HHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc
Q 012504 254 EKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVY 333 (462)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 333 (462)
.--....-.+.+-.+.|...+.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|..-++...+
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 11111111222334456666677788889999999999999986422 355788888889999999999999999986
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 334 NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
--+.|-..|-.|.++|.-.+...-|+-.|++... +.|+..|.+|..+|.+.++. ++|+..|..+...+-.+...+..
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~-~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL-EEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH-HHHHHHHHHHHhccccchHHHHH
Confidence 3355788999999999999999999999999854 56889999999999999999 99999999999987777789999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhc
Q 012504 412 AASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
|+..|.+.++.++|.+.+++.++
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999998765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=119.55 Aligned_cols=281 Identities=12% Similarity=0.043 Sum_probs=201.1
Q ss_pred CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC------CChhhHHHHHHHHHcCCChhHHHHH
Q 012504 116 LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV------RDVVSWSSMIAGFVACDSPSDALKV 189 (462)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~ 189 (462)
+..+|...|..+-.+ +.-+..+...+..+|...+++++|+++|+.+.. .+...|.+.+-.+.+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 445667777763333 333446666777788888888888888887763 266677777654432 122233
Q ss_pred HHH-hHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh
Q 012504 190 FHR-MKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL 268 (462)
Q Consensus 190 ~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (462)
+.+ +... -+-.+.+|..+.++|.-+++.+.|++.|++..+.. +-...+|+.+..-+.....+|+|...|+.....++
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 322 2222 24466788888888888888888888888888764 33677888888888888889999999998888777
Q ss_pred hhHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 012504 269 QSWTI---MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCM 345 (462)
Q Consensus 269 ~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 345 (462)
..|++ +...|.+.++++.|.-.|+++.+-+.. +.+....+...+.+.|+.++|+++++++... -+-|+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 65544 567788899999999999888875432 4556666777788888999999999988753 12234444445
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
+..+...+++++|+..++++.. +.+..++..+...|.+.|+. +.|..-|-.+.+++|.-..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~-~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT-DLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc-hHHHHhhHHHhcCCCccch
Confidence 6667788899999999988854 33566777788889999999 9999999999998887543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-10 Score=104.89 Aligned_cols=415 Identities=9% Similarity=-0.055 Sum_probs=282.5
Q ss_pred cChhHHHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCC-CCCCcccHHHHHHHHHhCCCchhHHHHHHH-
Q 012504 14 KTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLP-VTPPLFAYNTLIRAYAKTSCSIESIKLFDE- 91 (462)
Q Consensus 14 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~-~~~~~~~y~~li~~~~~~g~~~~a~~~~~~- 91 (462)
.+...|.-+-+++...+..|+-.-|-.-.+ ...++.+.|..+...-. ...|..+.......+.+..++++|..++..
T Consensus 30 ~~y~~a~f~adkV~~l~~dp~d~~~~aq~l-~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~ 108 (611)
T KOG1173|consen 30 HRYKTALFWADKVAGLTNDPADIYWLAQVL-YLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRG 108 (611)
T ss_pred HhhhHHHHHHHHHHhccCChHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456666666777766666665555444431 22236666665554332 126777888888889999999999999882
Q ss_pred ---HHHC-------C--CCCCcch----HHHH-----H--HHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHh
Q 012504 92 ---MLKT-------G--LRPDNFT----YPFV-----V--KACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAA 148 (462)
Q Consensus 92 ---m~~~-------g--~~p~~~~----~~~l-----l--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (462)
+..- + +.+|..- -+.- + ..|....++++|...|.+.....+.-. ..+..++....-
T Consensus 109 ~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~-Ea~~~lvs~~ml 187 (611)
T KOG1173|consen 109 HVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF-EAFEKLVSAHML 187 (611)
T ss_pred chhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH-HHHHHHHHHHhc
Confidence 2110 0 1111111 0011 1 113334556677766666554432211 111111111110
Q ss_pred ------------------cCChhHHHHHHhcCC--------------------CCChhhHHHHHHHHHcCCChhHHHHHH
Q 012504 149 ------------------CKEIDVAKAVFEEMP--------------------VRDVVSWSSMIAGFVACDSPSDALKVF 190 (462)
Q Consensus 149 ------------------~~~~~~A~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~ 190 (462)
..+.+..+..|+-.. +.++.....-..-+...+++.+..++.
T Consensus 188 t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit 267 (611)
T KOG1173|consen 188 TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKIT 267 (611)
T ss_pred chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHh
Confidence 011111222222110 113344444555677789999999999
Q ss_pred HHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh--
Q 012504 191 HRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL-- 268 (462)
Q Consensus 191 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 268 (462)
+...+.. ++....+..-|.++...|+..+-..+-..+++.- |..+.+|-++.--|...|+.++|.+.|.+...-|.
T Consensus 268 ~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f 345 (611)
T KOG1173|consen 268 EELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF 345 (611)
T ss_pred HHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc
Confidence 9988763 5666666666778888899888888888888764 66788999999999999999999999999876443
Q ss_pred -hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 269 -QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 269 -~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
..|-.+..+|.-.|..++|+..+..+-+.- +-....+--+.--|.+.++.+.|.++|.+... -.+.|+.+.+-+.-
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgv 422 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGV 422 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhh
Confidence 689999999999999999999998887641 11111222233347788999999999999974 33445778888877
Q ss_pred HHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 012504 348 MLGRAGLIEEAYHIIRNMPT--------EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 418 (462)
.....+.+.+|..+|+.... .+ ..++++.|..+|.+.+.+ ++|+..+++++.+.|.++.++.+++.+|..
T Consensus 423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~-~eAI~~~q~aL~l~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY-EEAIDYYQKALLLSPKDASTHASIGYIYHL 501 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH-HHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 77788999999999987631 12 467789999999999999 999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcCC
Q 012504 419 SGNWDTAAELMVAINQKG 436 (462)
Q Consensus 419 ~g~~~~A~~~~~~~~~~~ 436 (462)
.|+++.|+..|.+..-..
T Consensus 502 lgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 502 LGNLDKAIDHFHKALALK 519 (611)
T ss_pred hcChHHHHHHHHHHHhcC
Confidence 999999999998765433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-11 Score=103.67 Aligned_cols=280 Identities=11% Similarity=0.063 Sum_probs=211.5
Q ss_pred cCChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHH
Q 012504 149 CKEIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIH 225 (462)
Q Consensus 149 ~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 225 (462)
.|++.+|++...+-.+. ....|..-.++..+.|+.+.+-.++.+..+..-.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 58888888888775532 344565666777788888888888888877433445555666667778888888888888
Q ss_pred HHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh-----------hhHHHHHHHHHHcCChHHHHHHHHHH
Q 012504 226 SYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL-----------QSWTIMISGLADNGRGNYAISLFAKM 294 (462)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m 294 (462)
.++.+.+ +-++.+......+|.+.|++.....++..+.+.+. .+|..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888876 55677788888899999999999999888886432 36777777777777777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHH
Q 012504 295 IQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAV 372 (462)
Q Consensus 295 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 372 (462)
..+ .+-++..-..++.-+...|+.++|.++..+..+. +..|+... + -...+-++.+.-++..+.... +.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCR---L-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHH---H-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 654 4556667777888889999999999999999887 66666222 2 234455665555544444311 23447
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.+.+|...|.+++.+ .+|...|+.+.+..|+.. .|..++.++.+.|+..+|.+..++....-.
T Consensus 330 L~~tLG~L~~k~~~w-~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 330 LLSTLGRLALKNKLW-GKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHHHHhhHH-HHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 888899999999999 999999999999888755 899999999999999999999988764433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-10 Score=110.60 Aligned_cols=356 Identities=10% Similarity=0.023 Sum_probs=253.1
Q ss_pred HHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhH
Q 012504 75 AYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDV 154 (462)
Q Consensus 75 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (462)
.....|+.++|.+++.+.++..+. ....|-+|...|-..|+.+++...+-.+-... +-|...|..+.....+.|+++.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 344459999999999999887543 67788899999999999988887766555444 3456788888888899999999
Q ss_pred HHHHHhcCCCCChh---hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH----HHHHHHHHHhcccchHhHHHHHHH
Q 012504 155 AKAVFEEMPVRDVV---SWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV----TLVSLVSACTSLINVRAGESIHSY 227 (462)
Q Consensus 155 A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~ 227 (462)
|.-+|.+..+.++. .+---...|.+.|+...|...|.++.....+.|.. ....++..+...++-+.|.+.+..
T Consensus 226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999988754333 33344567888999999999999988864222222 222345556666777888888877
Q ss_pred HHHh-CCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC----CCh----------------------hhH----HHHHH
Q 012504 228 AVVN-GLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE----KNL----------------------QSW----TIMIS 276 (462)
Q Consensus 228 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----------------------~~~----~~l~~ 276 (462)
.... +-..+...++.++..+.+...++.+......+.. +|. .+| -.++-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 6662 2244566778888888988888888877766542 111 011 12333
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 277 GLADNGRGNYAISLFAKMIQTGLKP--DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
++.+.+..+....+.......++.| +...|.-+..++...|++.+|..+|..+... ...-+..+|..+.++|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhh
Confidence 4445555555555555556665444 3457888899999999999999999999865 223346789999999999999
Q ss_pred HHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---------CCCCchHHHHHHHHhhcCCHH
Q 012504 355 IEEAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE---------PELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 355 ~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~g~~~ 423 (462)
++.|.+.|+.+.. .| +...--.|...+.+.|+. ++|.+.++.+..-+ +.+..........+...|+.+
T Consensus 465 ~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~-EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNH-EKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCH-HHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 9999999998743 33 455556677788999999 88888888765322 122345566778888999999
Q ss_pred HHHHHHHHHhc
Q 012504 424 TAAELMVAINQ 434 (462)
Q Consensus 424 ~A~~~~~~~~~ 434 (462)
+-+.+-..|+.
T Consensus 544 ~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 544 EFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHH
Confidence 87777666654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-10 Score=98.59 Aligned_cols=380 Identities=14% Similarity=0.080 Sum_probs=266.7
Q ss_pred CHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHH
Q 012504 49 SLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSL 126 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 126 (462)
++..|+.+|++.-.. .+...|-.-+..=.++.++..|..+++..+..=+..|..-|. .+-.=-..|++..|.++|+.
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHHHHHH
Confidence 777888899876432 566667777788888899999999999988753333333332 22223456899999999988
Q ss_pred HHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC--CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH-
Q 012504 127 IFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP--VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV- 203 (462)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~- 203 (462)
-.+. .|+...|++.|+.=.+-+.++.|..++++.. .|++.+|-....--.+.|+...+..+|+...+. -.|..
T Consensus 167 W~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~ 242 (677)
T KOG1915|consen 167 WMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEE 242 (677)
T ss_pred HHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHH
Confidence 7764 7889999999999999999999999999876 688888888888888899999999999887663 12333
Q ss_pred ---HHHHHHHHHhcccchHhHHHHHHHHHHhCCCch--HhHHHHHHHHHHhcCChHHHHHHH--------hhccCC---C
Q 012504 204 ---TLVSLVSACTSLINVRAGESIHSYAVVNGLELD--VALGTALVEMYSKCGHVEKAFKVF--------NLMREK---N 267 (462)
Q Consensus 204 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~--------~~~~~~---~ 267 (462)
.|.+...-=.++..++.|.-+|+..+..- +.+ ...|..+...--+-|+........ +.+.+. |
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 23333333345567788888888887763 333 445555555545556544433332 222233 3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHh---hccCcHHHHHHHHHHHHHhcCCCC
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI-------SFSAILSAC---SHLGLVDEGKNYFDEMARVYNIKP 337 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 337 (462)
-.+|--.+..-...|+.+...++|++++.. ++|-.. .|.-+=-+| ....+.+.+.++|+...+ -++.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 456777777777788999999999988875 444221 121111111 246788888888888875 4444
Q ss_pred chhHHHHHHHH----HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHH
Q 012504 338 TMEHYGCMVDM----LGRAGLIEEAYHIIRNM-PTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLA 412 (462)
Q Consensus 338 ~~~~~~~l~~~----~~~~~~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 412 (462)
...|+.-+--+ -.++.+...|.+++... +..|...+|...|..-.+.+++ +....++++.++.+|.+..+|...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef-DRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF-DRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH-HHHHHHHHHHHhcChHhhHHHHHH
Confidence 45555544333 34677888888888765 4458888888888888888888 888888888888888888888888
Q ss_pred HHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 413 ASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 413 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+..-...|+++.|..+|+-.++...-
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 88888888888888888877765543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.9e-11 Score=108.72 Aligned_cols=231 Identities=15% Similarity=0.178 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHh-----C-CCchH-hHHHHHHHHHHhcCChHHHHHHHhhccC--------C
Q 012504 202 SVTLVSLVSACTSLINVRAGESIHSYAVVN-----G-LELDV-ALGTALVEMYSKCGHVEKAFKVFNLMRE--------K 266 (462)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~ 266 (462)
..+...+...|...|+++.|+..+++.++. | ..|.. ...+.+...|...+++++|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356777888999999999999999887765 2 12333 3445578899999999999999998863 1
Q ss_pred C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHHhcC--
Q 012504 267 N---LQSWTIMISGLADNGRGNYAISLFAKMIQT-----GL-KPDSI-SFSAILSACSHLGLVDEGKNYFDEMARVYN-- 334 (462)
Q Consensus 267 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 334 (462)
+ ..+++.|..+|.+.|++++|...+++..+- |. .|... .++.+...|...+++++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 257888889999999999998888876532 22 22322 456677778899999999999988766533
Q ss_pred CCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 335 IKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT---------EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 335 ~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+.++ ..+++.|...|...|++++|.++++++.. .+ ....++.+...|.+.+++ ..|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~-~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY-EEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc-chHHHHHHHHHH
Confidence 2222 56789999999999999999999998732 12 245677788899999999 999999998765
Q ss_pred ----cCCCCC---chHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 401 ----LEPELG---ANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 401 ----~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.+|+.+ .+|..|+..|.+.|+++.|+++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 355554 568899999999999999999998775
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-11 Score=102.91 Aligned_cols=198 Identities=10% Similarity=0.017 Sum_probs=152.5
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA 312 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 312 (462)
....+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345666677777788888888888777653 234567777788888888888888888887763 2345566777777
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYL 390 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 390 (462)
+...|++++|...+++.......+.....+..+...+...|++++|...+++... +.+...+..+...+...|++ +.
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY-KD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH-HH
Confidence 8888899999998888876422223355677788888899999999999988643 23466777888889999999 99
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 391 DDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 391 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
|...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999998888888888888888999999999999988877543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-13 Score=82.28 Aligned_cols=50 Identities=40% Similarity=0.755 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhh
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR 113 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 113 (462)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998864
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-09 Score=102.86 Aligned_cols=214 Identities=11% Similarity=0.015 Sum_probs=137.2
Q ss_pred HHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCC---CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCC
Q 012504 21 QLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVT---PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTG 96 (462)
Q Consensus 21 ~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 96 (462)
..+.++...|+.|+..+|.+++ .+...|+++.|- +|.-|..+ -+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 4677888899999999999999 444455777666 66655432 23334555555555555554443
Q ss_pred CCCCcchHHHHHHHhhhhcCchhHHHH---HHHHHH----hCC-----------------CCccchHhHHHHHHHhcCCh
Q 012504 97 LRPDNFTYPFVVKACGRCLLIGIGGSV---HSLIFK----VGL-----------------DSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 97 ~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~----~~~-----------------~~~~~~~~~l~~~~~~~~~~ 152 (462)
.|.+.||..+..+|...||+..-..+ ++.+.. .|+ -||. ...+....-.|-+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglw 155 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLW 155 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHH
Confidence 45555666666666666554332111 111111 111 0111 1112222223333
Q ss_pred hHHHHHHhcC---------------------------------C-CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCC
Q 012504 153 DVAKAVFEEM---------------------------------P-VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANE 198 (462)
Q Consensus 153 ~~A~~~~~~~---------------------------------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 198 (462)
+.+.+++..+ . .+++.+|.+++..-...|+.+.|..++.+|++.|+
T Consensus 156 aqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 3333333222 2 26788899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 199 SPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 199 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
+.+.+-|-.++-+ .++...++.++.-|...|+.|+..|+...+..+..+|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9998888777765 78888889999999999999999998877766666443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-09 Score=90.04 Aligned_cols=268 Identities=7% Similarity=-0.009 Sum_probs=140.9
Q ss_pred CCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHH---HHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 012504 132 LDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWS---SMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSL 208 (462)
Q Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 208 (462)
++.|......+.+++...|+.++|+..|+....-|+.+.. ...-.+.+.|+.+....+...+.... .-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 3444555566666666666666666666665533322211 11222345566666555555554321 1122222222
Q ss_pred HHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChH
Q 012504 209 VSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGN 285 (462)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 285 (462)
.......+++..|..+-++.++.. +-+...+-.-..++...|+.++|.-.|+.... -+..+|.-|+.+|...|++.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 222334455555555555555443 33344444445556666666666666655442 24566666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHh-hccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHH
Q 012504 286 YAISLFAKMIQTGLKPDSISFSAIL-SAC-SHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHII 362 (462)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~ 362 (462)
+|..+-+..... ++.+..+.+.+. ..| .....-++|.++++.-. .+.|+ ....+.+...+...|..++++.++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 666655554433 233444444442 222 22233455666666554 23444 344455556666666666666666
Q ss_pred HhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 363 RNMP-TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 363 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++.. ..||....+.|...+...+.+ +++...|..+++++|.+.
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~-Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEP-QKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhH-HHHHHHHHHHHhcCccch
Confidence 6543 246666666666666666666 666666666666666654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-10 Score=108.22 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=51.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 012504 266 KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCM 345 (462)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 345 (462)
+++.+|...+..-...|+.+.|..++.+|++.|++.+.+-|..++-+ .++...++.+++-|... |+.|+..|+...
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~ady 277 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADY 277 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHH
Confidence 56666666666666666666666666666666666666655555533 55555666666666554 666666666655
Q ss_pred HHHHHhcC
Q 012504 346 VDMLGRAG 353 (462)
Q Consensus 346 ~~~~~~~~ 353 (462)
+..+.+.|
T Consensus 278 vip~l~N~ 285 (1088)
T KOG4318|consen 278 VIPQLSNG 285 (1088)
T ss_pred HHhhhcch
Confidence 55554433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-09 Score=93.65 Aligned_cols=345 Identities=11% Similarity=-0.019 Sum_probs=233.4
Q ss_pred CHHHHHHHhccCCCC-CC-cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCc-chHHHHHHHhhhhcCchhHHH---
Q 012504 49 SLHFTRSLFNNLPVT-PP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN-FTYPFVVKACGRCLLIGIGGS--- 122 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~-~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~--- 122 (462)
.+++|.+.+.+.-.. |+ ..-|.....+|...|+|++..+.-...++. .|+- -.+..-.+++-..|++++++.
T Consensus 130 kY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~D~t 207 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALFDVT 207 (606)
T ss_pred cHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHHhhh
Confidence 888999988765433 77 777888899999999999988887777763 3332 223333344444555554431
Q ss_pred -------------------HHHHH--------HH-hC--CCCccchHhHHHHHHHhc--------C-----ChhHHHHHH
Q 012504 123 -------------------VHSLI--------FK-VG--LDSDKYIGNTLLRMYAAC--------K-----EIDVAKAVF 159 (462)
Q Consensus 123 -------------------~~~~~--------~~-~~--~~~~~~~~~~l~~~~~~~--------~-----~~~~A~~~~ 159 (462)
++... .+ .+ +-|+....++....+... + .+.++.+.+
T Consensus 208 v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l 287 (606)
T KOG0547|consen 208 VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEAL 287 (606)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHH
Confidence 11111 11 11 122222222222222110 0 122222222
Q ss_pred hcCC--------------------CC-----Ch------hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 012504 160 EEMP--------------------VR-----DV------VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSL 208 (462)
Q Consensus 160 ~~~~--------------------~~-----~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 208 (462)
..-. .+ |. .+...-.--+.-.|+...|..-|+..++....++. .|-.+
T Consensus 288 ~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~ 366 (606)
T KOG0547|consen 288 EKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKR 366 (606)
T ss_pred HhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHH
Confidence 2221 01 11 11111112244568999999999999886533333 26677
Q ss_pred HHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChH
Q 012504 209 VSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGN 285 (462)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 285 (462)
...|....+.++..+.|+...+.+ +.++.+|..-...+.-.+++++|..-|++...- +...|-.+..+.-+.++++
T Consensus 367 a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 367 AAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999887 667888888888899999999999999998864 4456777777777889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---------hhHHHHHHHHHHhcCCHH
Q 012504 286 YAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT---------MEHYGCMVDMLGRAGLIE 356 (462)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~ 356 (462)
++...|++.+.+ ++-.+..|+.....+..+++++.|.+.|+..... .|+ +.+-..++..-. .+++.
T Consensus 446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~ 520 (606)
T KOG0547|consen 446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPREHLIIVNAAPLVHKALLVLQW-KEDIN 520 (606)
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---ccccccccccchhhhhhhHhhhch-hhhHH
Confidence 999999999987 4445678999999999999999999999998753 333 222223332222 38999
Q ss_pred HHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 357 EAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 357 ~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
.|.++++...+ .| ....+..|...-.+.|+. ++|+++|++...+-.
T Consensus 521 ~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i-~eAielFEksa~lAr 568 (606)
T KOG0547|consen 521 QAENLLRKAIELDPKCEQAYETLAQFELQRGKI-DEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHH
Confidence 99999999854 33 456788899999999999 999999999887644
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-10 Score=96.52 Aligned_cols=198 Identities=15% Similarity=0.129 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMY 247 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (462)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 345555556666666666666666655432 2233444455555555555555555555555443 22333444444445
Q ss_pred HhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 248 SKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
...|++++|.+.+++ .......| ....+..+...+...|++++|...+
T Consensus 110 ~~~g~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQ-------------------------------AIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred HHcccHHHHHHHHHH-------------------------------HHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555544 44321111 1223333444445555555555555
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 327 DEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.+.... .+.+...+..+...+...|++++|...+++... +.+...+..+...+...|+. +.|..+.+.+.+.
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~ 232 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDV-AAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhh
Confidence 555432 122234444555555555555555555554321 22333444444455555555 5555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.2e-09 Score=96.84 Aligned_cols=404 Identities=14% Similarity=0.045 Sum_probs=254.0
Q ss_pred HHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC-cc
Q 012504 27 LKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NF 102 (462)
Q Consensus 27 ~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ 102 (462)
...-+.-|..+|.++- .....|+++.+-+.|++...- .....|+.+...+...|.-..|+.+++.-......|+ +.
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3334556778888877 556667888888888775421 4556688888888888888889988888765443343 33
Q ss_pred hHHHHHHHhh-hhcCchhHHHHHHHHHHh--CC--CCccchHhHHHHHHHhc-----------CChhHHHHHHhcCCCC-
Q 012504 103 TYPFVVKACG-RCLLIGIGGSVHSLIFKV--GL--DSDKYIGNTLLRMYAAC-----------KEIDVAKAVFEEMPVR- 165 (462)
Q Consensus 103 ~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~- 165 (462)
.+...-..|. +.+..+++..+..+++.. +. ......|..+.-+|... ....++.+.+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333343 346677777777766652 11 11223333333333321 1234566777776432
Q ss_pred --ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHH
Q 012504 166 --DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTAL 243 (462)
Q Consensus 166 --~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 243 (462)
|+.+...+.--|+-.++.+.|.+..++..+.+-.-+...|..+.-.+...+++..|+.+.+.....- ..|......-
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 3333333334466778889999998888887656778888888888888889988888887665431 1111111111
Q ss_pred HHHHHhcCChHHHHHHHhhccC-------------------------------CC-hhhHHHHHHHHHHcCChHHHHHHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMRE-------------------------------KN-LQSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~-------------------------------~~-~~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
+..-..-++.+++......+.. .+ +.++..+..- .. -+...+..-.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-~a-~~~~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-VA-SQLKSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-HH-hhhhhccccc
Confidence 2222223444444333222210 00 1111111111 11 0000000000
Q ss_pred HHHHHCCCC--CCH------HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 012504 292 AKMIQTGLK--PDS------ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 292 ~~m~~~~~~--p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 363 (462)
. +...-+. |+. ..+......+.+.+..++|...+.+..+ ..+-....|......+...|.+++|.+.|.
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0 1111112 221 1233445567788889999988888865 345557788888888999999999999998
Q ss_pred hCCC--CCCHHHHHHHHHHHHHcCChHHHHHH--HHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 364 NMPT--EPNAVILRSFLGACRNHGQVLYLDDN--LGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 364 ~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.... +.++.+..++...+.+.|+. ..+.. ++..+.+.+|.++..|..++.++.+.|+.++|...|....+...
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~-~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSP-RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCc-chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 7632 44578889999999999998 88888 99999999999999999999999999999999999998887653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-10 Score=106.87 Aligned_cols=258 Identities=12% Similarity=-0.046 Sum_probs=183.7
Q ss_pred ChhhHHHHHHHHHc-----CCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHh---------cccchHhHHHHHHHHHH
Q 012504 166 DVVSWSSMIAGFVA-----CDSPSDALKVFHRMKLANESPN-SVTLVSLVSACT---------SLINVRAGESIHSYAVV 230 (462)
Q Consensus 166 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 230 (462)
+...|...+.+-.. .+++++|...|++..+. .|+ ...+..+..++. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556666655322 23467999999998875 454 445555544433 23457899999999998
Q ss_pred hCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 012504 231 NGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFS 307 (462)
Q Consensus 231 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 307 (462)
.. +.+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|...+++..+.... +...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 86 56778888899999999999999999999875 3 3567888899999999999999999999986433 222333
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHHc
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAV-ILRSFLGACRNH 384 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~-~~~~l~~~~~~~ 384 (462)
.++..+...|++++|...++++... .+| ++..+..+..++...|++++|...+.++.. .|+.. ..+.+...|...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 3444566678999999999998763 234 455677788889999999999999998754 34433 344455556666
Q ss_pred CChHHHHHHHHHHHHhc---CCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 385 GQVLYLDDNLGKLLLKL---EPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 385 ~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
| +.+...++++.+. .|.++ ..+...|.-.|+.+.+... +++.+.+
T Consensus 489 g---~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S---ERALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H---HHHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 5 4566666666653 34443 2266677778888877776 8777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.7e-11 Score=98.46 Aligned_cols=229 Identities=12% Similarity=0.027 Sum_probs=185.5
Q ss_pred HHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHHHHHHHHHc
Q 012504 205 LVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTIMISGLADN 281 (462)
Q Consensus 205 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 281 (462)
-..+..+|.+.|.+.+|++.++..++. .|-+.+|..|-.+|.+..+++.|+.+|.+-.+ | ++....-+.+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 345777888888888888888887776 46667777888889998999999988888765 3 333344566777888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 012504 282 GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHI 361 (462)
Q Consensus 282 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 361 (462)
++.++|.++++...+.. +.+......+...|.-.++++-|..+|+++.+. |. .++..|+.+.-+|.-.++++-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 89999999999888762 335556666777788889999999999999886 54 4567888888889999999999888
Q ss_pred HHhCCC---CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 362 IRNMPT---EP--NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 362 ~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
|++... .| -..+|..+.......|++ ..|.+.|+-++..+|++...++.|+-.-.+.|++++|..++.......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~-nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDF-NLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccch-HHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 877632 23 367899999999999999 999999999999999999999999999999999999999999887765
Q ss_pred Ccc
Q 012504 437 LNK 439 (462)
Q Consensus 437 ~~~ 439 (462)
+..
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=98.01 Aligned_cols=236 Identities=13% Similarity=0.111 Sum_probs=200.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 012504 170 WSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSK 249 (462)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (462)
-+.+..+|.+.|-+.+|.+.|+...+. .|-+.||..+-.+|.+..++..|..++.+-++.- +.++.........+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 367889999999999999999988774 6788899999999999999999999999888763 6666666778899999
Q ss_pred cCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 250 CGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
.++.++|.++|+...+. ++.+...+...|.-.++++-|+..++++.+.|+. ++..|+.+.-+|.-.+++|-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988753 5666777778889999999999999999999976 7788888888999999999999999
Q ss_pred HHHHHhcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 012504 327 DEMARVYNIKPT--MEHYGCMVDMLGRAGLIEEAYHIIRNMPTE--PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 327 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~ 402 (462)
.+.... --.|+ ..+|..+.......|++..|.+.|+-.... .....++.|...-.+.|++ +.|..++..+....
T Consensus 382 ~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i-~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI-LGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch-HHHHHHHHHhhhhC
Confidence 888764 33344 678888998899999999999999987542 4567899998888999999 99999999999999
Q ss_pred CCCCchHHH
Q 012504 403 PELGANYVL 411 (462)
Q Consensus 403 p~~~~~~~~ 411 (462)
|+-......
T Consensus 460 P~m~E~~~N 468 (478)
T KOG1129|consen 460 PDMAEVTTN 468 (478)
T ss_pred ccccccccc
Confidence 986554433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.2e-12 Score=77.37 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=43.8
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 012504 266 KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH 315 (462)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 315 (462)
||+.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888899999999999999999999999988999999999999888864
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.2e-09 Score=93.93 Aligned_cols=269 Identities=12% Similarity=0.034 Sum_probs=193.4
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcC
Q 012504 71 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACK 150 (462)
Q Consensus 71 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 150 (462)
.-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-.-+-..+++.- +..+.+|-++.--|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 33445566788888888888887763 4566667777778888888877777777777764 445677777777777778
Q ss_pred ChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHH
Q 012504 151 EIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSY 227 (462)
Q Consensus 151 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (462)
..++|.+.|.+...- -...|-.+...|.-.|..++|+..|...-+. ++.....+.-+..-|.+.++++.|.+.|.+
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 888888888876643 3457888888888888888888888776553 223333344455567778888888888888
Q ss_pred HHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC----------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 228 AVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK----------NLQSWTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
..... |.|+.+.+-+.-.....+.+.+|..+|+....+ -..+++.|..+|.+.+.+++|+..+++....
T Consensus 406 A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 87764 667777787877777788888888888776521 1235677777888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 298 GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
. +-+..++..+.-.|...|+++.|...|.+.. .+.|+-.+...++.
T Consensus 485 ~-~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 485 S-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLK 530 (611)
T ss_pred C-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHH
Confidence 2 3466777777777777888888888887776 66777655555554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-09 Score=97.29 Aligned_cols=228 Identities=11% Similarity=-0.039 Sum_probs=149.3
Q ss_pred cCCChhHHHHHHHHhHHCC-CCCC--HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHH
Q 012504 179 ACDSPSDALKVFHRMKLAN-ESPN--SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEK 255 (462)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (462)
..+..+.++.-+.++.... ..|+ ...|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3466677888887777532 2222 3456677777888899999988888888875 5567888888888999999999
Q ss_pred HHHHHhhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 256 AFKVFNLMRE--K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 256 a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
|...|++..+ | +..+|..+...+...|++++|.+.|++..+. .|+..........+...++.++|...+.+...
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 9988888764 3 3467777888888889999999999888875 34332222222223456778888888876554
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHH--HHHHHHHhC-CCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 333 YNIKPTMEHYGCMVDMLGRAGLIE--EAYHIIRNM-PTE-----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
..+|+...+ .+.. ...|+.. ++.+.+.+. ... .....|..+...+...|+. ++|...|+++.+.+|.
T Consensus 194 -~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~-~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 -KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL-DEAAALFKLALANNVY 268 (296)
T ss_pred -hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCc
Confidence 333433222 2322 2344443 333333322 111 1235677888888888998 9999999998888864
Q ss_pred C-CchHHHHHHH
Q 012504 405 L-GANYVLAASV 415 (462)
Q Consensus 405 ~-~~~~~~l~~~ 415 (462)
+ +.....++..
T Consensus 269 ~~~e~~~~~~e~ 280 (296)
T PRK11189 269 NFVEHRYALLEL 280 (296)
T ss_pred hHHHHHHHHHHH
Confidence 4 3333334433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-09 Score=105.53 Aligned_cols=226 Identities=13% Similarity=-0.040 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHh-----cccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh---------cCChHHHHHHHhhccCC
Q 012504 201 NSVTLVSLVSACT-----SLINVRAGESIHSYAVVNGLELDVALGTALVEMYSK---------CGHVEKAFKVFNLMREK 266 (462)
Q Consensus 201 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 266 (462)
+...|...+.+-. ..+++++|...+++..+.. +.+...+..+..+|.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4444444444421 2345788999999998875 4455666666665542 34578999999988753
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHH
Q 012504 267 ---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHY 342 (462)
Q Consensus 267 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 342 (462)
+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+. .|+ ...+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhH
Confidence 56788888889999999999999999999874 224567788888899999999999999999864 444 2333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 343 GCMVDMLGRAGLIEEAYHIIRNMPT--EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 343 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
..++..+...|++++|...+++... +| ++..+..+..++...|+. ++|...++++....|.+......++..|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~-~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH-ELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH-HHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 4445556778999999999988742 34 345567778888999999 9999999998888888877788888888888
Q ss_pred CCHHHHHHHHHHHhc
Q 012504 420 GNWDTAAELMVAINQ 434 (462)
Q Consensus 420 g~~~~A~~~~~~~~~ 434 (462)
| ++|...++.+.+
T Consensus 489 g--~~a~~~l~~ll~ 501 (553)
T PRK12370 489 S--ERALPTIREFLE 501 (553)
T ss_pred H--HHHHHHHHHHHH
Confidence 8 478887777654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.1e-08 Score=83.27 Aligned_cols=266 Identities=9% Similarity=-0.002 Sum_probs=197.5
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH-HHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHH
Q 012504 165 RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV-TLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTAL 243 (462)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 243 (462)
.|+.....+...+...|+.++|+..|++.... .|+.. ....-.-.+...|+.+....+...+.... ..+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 47778888999999999999999999988764 34332 22222233456778888777777776543 2333444444
Q ss_pred HHHHHhcCChHHHHHHHhhccCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMREKN---LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD 320 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (462)
+......++++.|+.+-++..+.+ +..+-.-...+...+++++|.-.|+...... +.+...|..|+.+|.-.|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 555566788999999988877644 4455555577889999999999999987642 235679999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHH-HHHH-hcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMV-DMLG-RAGLIEEAYHIIRNMP-TEPN-AVILRSFLGACRNHGQVLYLDDNLGK 396 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~ 396 (462)
+|.-.-+...+ -++.+..+...+. ..+. ....-++|.++++... .+|+ ....+.+...+...|.. +.+..+++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~-~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPT-KDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCcc-chHHHHHH
Confidence 99988887776 4455666665553 3333 3334578999998864 3565 45666777888899999 99999999
Q ss_pred HHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 397 LLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 397 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+.+...|++. ....|+..+...+.+++|++.|....+.++.
T Consensus 463 ~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 9999999876 8899999999999999999999887665544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-09 Score=86.88 Aligned_cols=194 Identities=10% Similarity=0.023 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMREKNL---QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH 315 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 315 (462)
+...|.-.|...|+...|..-+++..+.|+ .+|..+...|.+.|..+.|.+-|++..+... -+....|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHh
Confidence 334455555666666666666655554332 3455555556666666666666665555321 123344444545555
Q ss_pred cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHH
Q 012504 316 LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 316 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
.|++++|...|++.........-..+|..+.-+..+.|+++.|.+.|++... +..+...-.+.......|++ -.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y-~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY-APARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc-hHHHH
Confidence 5566666666665555422222345555555555556666666665555422 12234444455555555555 55555
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 394 LGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 394 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+++....-.+.....+...+..-.+.|+.+.+-++=..+.+
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555444444555555555555555555554444433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-08 Score=93.82 Aligned_cols=200 Identities=12% Similarity=0.142 Sum_probs=126.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHHC-----CC-CC-CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 172 SMIAGFVACDSPSDALKVFHRMKLA-----NE-SP-NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
.+...|...+++.+|..+|+++... |- .| -..++..|..+|.+.|++++|...++...+.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------- 312 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------- 312 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------
Confidence 4667788889999999988887542 11 11 1234555556666777776666665554432
Q ss_pred HHHHhcCChHHHHHHHhhcc---CCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHh
Q 012504 245 EMYSKCGHVEKAFKVFNLMR---EKNL-QSWTIMISGLADNGRGNYAISLFAKMIQT---GLKPD----SISFSAILSAC 313 (462)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~ 313 (462)
++... .+.+ ..++.++..++..+++++|..++++..+. -+.++ ..+++.+...|
T Consensus 313 ---------------~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 313 ---------------YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred ---------------HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 11100 0111 12444555566666666666666554432 01111 34777888888
Q ss_pred hccCcHHHHHHHHHHHHHhc----C-CCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCC-HHHHHHHH
Q 012504 314 SHLGLVDEGKNYFDEMARVY----N-IKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMP--------TEPN-AVILRSFL 378 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~-~~~~~~l~ 378 (462)
.+.|++++|+++++.+.... + ..+ ....++.|...|.+.+++++|.++|.+.. ..|+ ..+|..|.
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 88888888888888776542 1 112 24567778888888888888888777652 1344 46788899
Q ss_pred HHHHHcCChHHHHHHHHHHHHh
Q 012504 379 GACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
..|...|++ +.|.++.+.+.+
T Consensus 458 ~~Y~~~g~~-e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 458 ALYRAQGNY-EAAEELEEKVLN 478 (508)
T ss_pred HHHHHcccH-HHHHHHHHHHHH
Confidence 999999999 999999888774
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-07 Score=89.07 Aligned_cols=412 Identities=12% Similarity=0.051 Sum_probs=250.7
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh--hhhhcCCHHHHHHHhccCCCC-CCcccHHHHHHHHH-h----
Q 012504 7 ETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI--LTSLSISLHFTRSLFNNLPVT-PPLFAYNTLIRAYA-K---- 78 (462)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~~~~~A~~~~~~~~~~-~~~~~y~~li~~~~-~---- 78 (462)
.+++..+|+++.|.+.+..-.+ .-+|...+.... .....|+.++|..++..+-.. |+-..|-..+..+. .
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 4677888888888888866443 344544444443 445567888888888776533 66666555554443 2
Q ss_pred -CCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCc-hhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHH
Q 012504 79 -TSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLI-GIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAK 156 (462)
Q Consensus 79 -~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 156 (462)
..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+.+.|++ .+++.|-..|......+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 224567778888876643 4444433333233332223 3455666667777754 34555655665444444444
Q ss_pred HHHhcCC------------------CCCh--hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhcc
Q 012504 157 AVFEEMP------------------VRDV--VSWSSMIAGFVACDSPSDALKVFHRMKLANESPN-SVTLVSLVSACTSL 215 (462)
Q Consensus 157 ~~~~~~~------------------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 215 (462)
+++.... .|.. .++..+...|-..|++++|++++++.... .|+ +..|..-.+.+-..
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 4444431 1222 24566678888999999999999999886 455 56788888999999
Q ss_pred cchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh----------hH--HHHHHHHHHcCC
Q 012504 216 INVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ----------SW--TIMISGLADNGR 283 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~ 283 (462)
|++.+|...++...... .-|-..-+..+..+.+.|+.++|.+++.....++.. .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999876 556777777888899999999999999888765421 22 334678899999
Q ss_pred hHHHHHHHHHHHHC--CC---C----------CCHHHHHHHHHHhhccC-------cHHHHHHHHHHHHHhcCCCCch--
Q 012504 284 GNYAISLFAKMIQT--GL---K----------PDSISFSAILSACSHLG-------LVDEGKNYFDEMARVYNIKPTM-- 339 (462)
Q Consensus 284 ~~~a~~~~~~m~~~--~~---~----------p~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~-- 339 (462)
+..|++.|....+. .+ + .+..+|..+++..-+.. -...|.++|-.+..........
T Consensus 321 ~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~ 400 (517)
T PF12569_consen 321 YGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQ 400 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccccccc
Confidence 88888766655432 01 1 22333444443221111 1234555555554321100000
Q ss_pred ---------hHHHHHHHHH---HhcCCHHHHHHHHHh-----------C----CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012504 340 ---------EHYGCMVDML---GRAGLIEEAYHIIRN-----------M----PTEPNAVILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 340 ---------~~~~~l~~~~---~~~~~~~~A~~~~~~-----------~----~~~~~~~~~~~l~~~~~~~~~~~~~a~ 392 (462)
.--..+..-. .+...-+++...-.. . +.+.|... +..-+.+..++.+.|.
T Consensus 401 ~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe~A~ 477 (517)
T PF12569_consen 401 EADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLEEAM 477 (517)
T ss_pred ccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHHHHH
Confidence 0000111000 111111111111100 0 00111111 2334556777779999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 393 NLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
.+++.+.+..|++..+|..-..+|.+.|++--|++.+..
T Consensus 478 kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 478 KFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 999999999999999999999999999999999987764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-08 Score=89.76 Aligned_cols=192 Identities=14% Similarity=0.044 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD-SISFSAILSAC 313 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~ 313 (462)
..|..+...|...|++++|...|++..+ .+...|+.+...+...|++++|...|++..+. .|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3455556666666666666666665543 23456666666666666666666666666653 232 34555555556
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
...|++++|.+.++...+. .|+..........+...+++++|.+.|++.....+...|. ........|+. ..+ .
T Consensus 143 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~-~~~-~ 216 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKI-SEE-T 216 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCC-CHH-H
Confidence 6666666666666666543 2322111111112234455666666664432111111121 11222234444 332 2
Q ss_pred HHHHHH-------hcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 394 LGKLLL-------KLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 394 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.++.+. +..|.....|..++.++...|++++|+..|++..+.++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 333332 23344445666666666666666666666666655543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-08 Score=80.53 Aligned_cols=200 Identities=13% Similarity=0.037 Sum_probs=154.3
Q ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHH
Q 012504 204 TLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLAD 280 (462)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 280 (462)
+...+.-.|...|+...|..-+++.+++. +.+..++..+...|.+.|+.+.|.+.|++..+ .+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34445566777788888888888887775 55667778888888888888888888887664 345678888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 281 NGRGNYAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 281 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
.|++++|...|++......-|. ..+|..+.-+..+.|+.+.|...|++..+. .+-...+...+.+...+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999998887644443 347888887888889999999999988763 2233567778888888999999999
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 360 HIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 360 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
.+++.... .++..+....|+.-...|+. +.+.++-..+.+..|....
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~-~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDR-AAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCcHH
Confidence 88887643 36777777778888888999 8888888888888887763
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-06 Score=80.53 Aligned_cols=422 Identities=13% Similarity=0.081 Sum_probs=236.5
Q ss_pred HHHHHHhhcChhHHHHHHHHHHH-hCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCch
Q 012504 6 IETLIQLSKTVHHLHQLHTLFLK-TSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 83 (462)
+.+++...+++...+..|+..+. ..+.-...+|.-.+ +....+-++.+.+++.+--. -+..+-+--|..+++.++++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk-~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK-VAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh-cCHHHHHHHHHHHHhccchH
Confidence 44555555666666666665443 23444444555555 44555555666666655433 33334566667777777777
Q ss_pred hHHHHHHHHHHCC------CCCCcchHHHHHHHhhhhcCch---hHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhH
Q 012504 84 ESIKLFDEMLKTG------LRPDNFTYPFVVKACGRCLLIG---IGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDV 154 (462)
Q Consensus 84 ~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (462)
+|-+.+...+... .+.+-..|..+-...++..+.- ....+++.+...-...-...|..|.+-|.+.|++++
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 7777776665331 1122333443333333332221 222223332222111112467788888888888888
Q ss_pred HHHHHhcCCCC--ChhhHHHHHHHHHc----------------CC------ChhHHHHHHHHhHHCCC-----------C
Q 012504 155 AKAVFEEMPVR--DVVSWSSMIAGFVA----------------CD------SPSDALKVFHRMKLANE-----------S 199 (462)
Q Consensus 155 A~~~~~~~~~~--~~~~~~~l~~~~~~----------------~~------~~~~a~~~~~~m~~~~~-----------~ 199 (462)
|.++|++.... .+.-|..+...|+. .+ +++-.+.-|+.+...+. +
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 88888776532 12222222222221 11 12222333333332210 1
Q ss_pred CCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCc------hHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh----
Q 012504 200 PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLEL------DVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ---- 269 (462)
Q Consensus 200 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 269 (462)
.++.+|..-+. ...|+..+....+.++.+.- .| -...|..+...|...|+++.|..+|++..+-+-.
T Consensus 347 ~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 347 HNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred ccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 12222322222 23455666677777776541 22 2346788899999999999999999998875433
Q ss_pred ---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 012504 270 ---SWTIMISGLADNGRGNYAISLFAKMIQTGLKP-----------------DSISFSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 270 ---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-----------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
+|..-...-.++.+++.|+++.++.....-.| +...|...+..-...|-++....+|+.+
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45555555566788889998888775432111 1122333444444567788888888888
Q ss_pred HHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCH-HHHHHHHHHHHH--cCChHHHHHHHHHHHHhcCC
Q 012504 330 ARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT---EPNA-VILRSFLGACRN--HGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~-~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~~p 403 (462)
....-..|.. .....-.+-...-++++.++|++-.. -|++ ..|+..+.-+.+ .|...+.|..+|+++++..|
T Consensus 504 idLriaTPqi--i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 504 IDLRIATPQI--IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHhcCCHHH--HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 7653333432 22223334556678999999998643 3554 567776665443 23333999999999999888
Q ss_pred CCC--chHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 404 ELG--ANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 404 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
+.. ..|...+..-.+-|....|++++++.-
T Consensus 582 p~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 553 234444555556799999999998753
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.13 E-value=9e-08 Score=89.87 Aligned_cols=283 Identities=13% Similarity=0.092 Sum_probs=164.3
Q ss_pred HHHHhcCChhHHHHHHhcCCCC--C-hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHh------c
Q 012504 144 RMYAACKEIDVAKAVFEEMPVR--D-VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACT------S 214 (462)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~------~ 214 (462)
..+...|++++|++.++.-... | ..........+.+.|+.++|..+|..+.+.+ |+...|...+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 3445666677776666554431 3 2334455566667777777777777776653 44444444333332 1
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChH-HHHHHHhhccCCCh-hhHHHHHHHHHHcCChHHHHHHHH
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVE-KAFKVFNLMREKNL-QSWTIMISGLADNGRGNYAISLFA 292 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 292 (462)
..+.+....+++++...- |.......+.-.+.....+. .+..++..+..+++ .+|..+-..|.......-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123455566666665442 22222221211111111222 23334444444444 344444444544444444444444
Q ss_pred HHHHC----C----------CCCCH--HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCH
Q 012504 293 KMIQT----G----------LKPDS--ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLI 355 (462)
Q Consensus 293 ~m~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 355 (462)
..... + -.|+. .++..+...|...|++++|..+.++.... .|+ +..|..-.+.|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence 44322 1 12333 24455667778889999999999988753 565 77788888889999999
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC--CC-------CchHHHHHHHHhhcCCHHH
Q 012504 356 EEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEP--EL-------GANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 356 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p--~~-------~~~~~~l~~~~~~~g~~~~ 424 (462)
.+|.+.++.... .-|...=+.....+.+.|+. +.|...+....+.+- .. .......+.+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~-e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRI-EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH-HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999988888754 22344444456667888888 999888888876542 21 1122356888999999999
Q ss_pred HHHHHHHHhc
Q 012504 425 AAELMVAINQ 434 (462)
Q Consensus 425 A~~~~~~~~~ 434 (462)
|++.|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9988876654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-09 Score=90.57 Aligned_cols=249 Identities=12% Similarity=0.055 Sum_probs=162.8
Q ss_pred HHhcCChhHHHHHHhcCCCC----ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhH
Q 012504 146 YAACKEIDVAKAVFEEMPVR----DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAG 221 (462)
Q Consensus 146 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 221 (462)
+.-.|++..++.-.+ .... +......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777765444 2211 2334455667788888776543 4444433 56666666665555544444455
Q ss_pred HHHHHHHHHhCCC-chHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012504 222 ESIHSYAVVNGLE-LDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLK 300 (462)
Q Consensus 222 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 300 (462)
..-+++....... .+.........++...|++++|+++++.. .+.......++.|.+.+|++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444443333322 23333344445677789999999988876 56777778889999999999999999999864 3
Q ss_pred CCHHHHHHHHHHhhc----cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHH
Q 012504 301 PDSISFSAILSACSH----LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVIL 374 (462)
Q Consensus 301 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~ 374 (462)
.| .+...+..++.. .+.+.+|..+|+++.. ...+++.+.+.+..++...|++++|.+++.+... +.++.+.
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 33 444555555433 3468899999999876 5567888899999999999999999999988643 3456777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
..++.+....|+..+.+.+++.++....|+.+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 77777777777764678889999998888865
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.5e-06 Score=78.81 Aligned_cols=426 Identities=11% Similarity=0.018 Sum_probs=248.2
Q ss_pred cChhHHHHHHHHHHHhC-CCCchhhhhhHhhhhhcCCHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchhHHHHHH
Q 012504 14 KTVHHLHQLHTLFLKTS-LDHNTCIISRFILTSLSISLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIESIKLFD 90 (462)
Q Consensus 14 ~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~a~~~~~ 90 (462)
++........+.+++.- -.++....--|.+ ...|+-++|......-. ...+-+.|+.+.-.+-...++++|++.|.
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L-~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTL-NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchh-hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 34455555555555432 2222222211112 23457777766654332 12667778888777777888899999998
Q ss_pred HHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC-----C
Q 012504 91 EMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV-----R 165 (462)
Q Consensus 91 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~ 165 (462)
.+...+.. |...+..+--.=++.|+++..........+.. +.....|..++.++.-.|+...|..+++...+ +
T Consensus 100 nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 100 NALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 88875422 44555555544567778877777777766653 22445677777777788888888888877652 3
Q ss_pred ChhhHHHH------HHHHHcCCChhHHHHHHHHhHHCCCCCCHHHH-HHHHHHHhcccchHhHHHHHHHHHHhCCCchHh
Q 012504 166 DVVSWSSM------IAGFVACDSPSDALKVFHRMKLANESPNSVTL-VSLVSACTSLINVRAGESIHSYAVVNGLELDVA 238 (462)
Q Consensus 166 ~~~~~~~l------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 238 (462)
+...+... .......|..+.|++.+..-... ..|...+ .+-...+.+.+++++|..++..++... +.+..
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~ 254 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLD 254 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHH
Confidence 33333222 23445677777777776654332 1222222 234455678888889988888888875 33444
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHhhccCCCh--hhHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 012504 239 LGTALVEMYSKC-GHVEKAFKVFNLMREKNL--QSWTIM-ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS 314 (462)
Q Consensus 239 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~--~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 314 (462)
.|..+..++.+- +..+....+|....+.-+ ..-..+ +.......-.+..-+++..+.++|+++- +..+...|-
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk 331 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHh
Confidence 445555555422 223333355555543111 000000 1111112223445556677777777653 333333333
Q ss_pred ccCcHHHHHHHHHHHH---HhcC----------CCCchhHH--HHHHHHHHhcCCHHHHHHHHHhCCCC-CCH-HHHHHH
Q 012504 315 HLGLVDEGKNYFDEMA---RVYN----------IKPTMEHY--GCMVDMLGRAGLIEEAYHIIRNMPTE-PNA-VILRSF 377 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~---~~~~----------~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~-~~~~~l 377 (462)
.....+-.+++.-.+. ...+ -+|+...| -.++..|-+.|+++.|...++....+ |+. ..|..-
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~K 411 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVK 411 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHH
Confidence 3222221111111111 1001 14554444 45678888999999999999998653 553 344445
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc-----CCccceEEEC
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK-----VPGCSWVKVN 449 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~ 449 (462)
.+.+...|+. +.|..+++++.+++..|..+-..-+.-..++++.++|.++....-+.|... +..+.|.++.
T Consensus 412 aRI~kH~G~l-~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 412 ARIFKHAGLL-DEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHhcCCh-HHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 5778899999 999999999999987776455466777789999999999998887665421 3456666553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-06 Score=76.20 Aligned_cols=403 Identities=10% Similarity=0.041 Sum_probs=207.1
Q ss_pred cChhHHHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHH----HHHHHhCCCchhHHHHH
Q 012504 14 KTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTL----IRAYAKTSCSIESIKLF 89 (462)
Q Consensus 14 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~l----i~~~~~~g~~~~a~~~~ 89 (462)
+++++|.+....++..+..+....+..++..-..+.+++|+.+.+.-+.. .+++.. .-++.+.+..++|+..+
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHHHHHHHH
Confidence 57888888888888777444444444444111223888888777666531 122222 22344578888888888
Q ss_pred HHHHHCCCCCCcc-hHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCc---------------------------cchHhH
Q 012504 90 DEMLKTGLRPDNF-TYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSD---------------------------KYIGNT 141 (462)
Q Consensus 90 ~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------------------~~~~~~ 141 (462)
+ |..++.. +...-...+-+.|++++|..+|+.+.+++.+.. ..+|..
T Consensus 103 ~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 103 K-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYEL 177 (652)
T ss_pred h-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHH
Confidence 7 3333332 444445557788888888888888866543211 112222
Q ss_pred HHH---HHHhcCChhHHHHHHhcCC--------CCC-----h-----hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCC
Q 012504 142 LLR---MYAACKEIDVAKAVFEEMP--------VRD-----V-----VSWSSMIAGFVACDSPSDALKVFHRMKLANESP 200 (462)
Q Consensus 142 l~~---~~~~~~~~~~A~~~~~~~~--------~~~-----~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 200 (462)
+.+ .++..|++.+|+++++... ..| . ..--.|.-.+...|+.++|..+|....+.. ++
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~ 256 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PA 256 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CC
Confidence 221 2233455555555554441 000 0 011122233444455555555555544442 22
Q ss_pred CHHHHHHH---HHHHhcccchHh--HHHHHHH-----------HHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012504 201 NSVTLVSL---VSACTSLINVRA--GESIHSY-----------AVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 201 ~~~~~~~l---~~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
|....... +.+.....++-. ....++. +....-......-+.++..| .+.-+.+.++-....
T Consensus 257 D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 257 DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP 334 (652)
T ss_pred CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC
Confidence 22111111 111111110000 0000000 00000000000001111111 223334444443333
Q ss_pred CCC-hhhHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH--------HHHHhc
Q 012504 265 EKN-LQSWTIMISGL--ADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFD--------EMARVY 333 (462)
Q Consensus 265 ~~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~ 333 (462)
..- ...+..++... ++...+.++.+++...-+....-........+......|+++.|.+++. .+...
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~- 413 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA- 413 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-
Confidence 322 22344444332 2223566777777776654222223344555566778999999999999 44432
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 334 NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--------EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
+..| .+...++..+.+.++.+.|..++.+... ++. ..++..+...-.++|+. ++|..+++++.+.+|+
T Consensus 414 ~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~-~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 414 KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE-EEASSLLEELVKFNPN 490 (652)
T ss_pred ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch-HHHHHHHHHHHHhCCc
Confidence 3334 4555667777777776666666655421 111 23344444555678999 9999999999999999
Q ss_pred CCchHHHHHHHHhhcCCHHHHHHHHHHH
Q 012504 405 LGANYVLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
+..+...++.+|++. +.+.|..+-+.+
T Consensus 491 d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999998776 457777665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-06 Score=78.73 Aligned_cols=130 Identities=11% Similarity=-0.014 Sum_probs=86.5
Q ss_pred HHHHHHHHhhc--cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHH--------hCCC-CCCHH
Q 012504 305 SFSAILSACSH--LGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIR--------NMPT-EPNAV 372 (462)
Q Consensus 305 ~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~-~~~~~ 372 (462)
.+..++..+.+ ......+..++..... +.+.+ ..+...++......|+++.|.+++. .+.. .-.+.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh
Confidence 44444444332 2246677777777765 33333 5566677888899999999999998 3332 22344
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKL----EPEL---GANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+...+...+.+.++. +.|..++..+.+- .+.. ...+..++..-.+.|+.++|.++++++.+.+.
T Consensus 419 ~V~aiv~l~~~~~~~-~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 419 TVGAIVALYYKIKDN-DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred HHHHHHHHHHhccCC-ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 555566677788888 8888888887652 2222 23455566666778999999999999987544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-08 Score=92.16 Aligned_cols=215 Identities=12% Similarity=0.059 Sum_probs=177.1
Q ss_pred HhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHH
Q 012504 212 CTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 212 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 288 (462)
+.+.|++.+|.-.|+..++.. |.+...|..|.......++-..|+..+++..+ .|..+.-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 457788999999999998886 67888999999999999999999999988875 35677888888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 289 SLFAKMIQTGLKPDSISFSAIL-----------SACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
+.++.-+....+ |..+. ..+.....+....++|-++....+..+|+.+...|.-.|--.|++++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999888654211 11111 22334445667777777777765666888899999999999999999
Q ss_pred HHHHHHhCCC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 358 AYHIIRNMPT-E-PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 358 A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
|.+.|+.+.. + .|...|+.|...++...+. .+|+..|.+++++.|.-.++...|+..|...|.+.+|.+.|=...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s-~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRS-EEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCccc-HHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999998743 4 4678999999999999999 999999999999999999999999999999999999999886544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-06 Score=79.97 Aligned_cols=378 Identities=12% Similarity=0.075 Sum_probs=242.3
Q ss_pred CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHH
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIF 128 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (462)
.+..+..++.+.|..+++.+ ...-.+...|+-++|.+..+...+.+++ +..+|..+--.+....++++|.+.|..+.
T Consensus 26 gLK~~~~iL~k~~eHgeslA--mkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 26 GLKLIKQILKKFPEHGESLA--MKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred HHHHHHHHHHhCCccchhHH--hccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55666677776666444433 3333455678899999999888876555 67778777776777789999999999998
Q ss_pred HhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCC-CCCCHHH
Q 012504 129 KVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLAN-ESPNSVT 204 (462)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~ 204 (462)
..+ +.|..++.-|.-.-+..++++.....-..+.+ .....|..+..++.-.|+...|..+++...+.. -.|+...
T Consensus 103 ~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~ 181 (700)
T KOG1156|consen 103 KIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKED 181 (700)
T ss_pred hcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHH
Confidence 876 44667777777777778888776666555543 345678888888888999999999999987764 2466655
Q ss_pred HHHHH------HHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh--h-hHHHHH
Q 012504 205 LVSLV------SACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL--Q-SWTIMI 275 (462)
Q Consensus 205 ~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~l~ 275 (462)
+.... ......|.++.|.+.+......- ......-..-...+.+.+++++|..++..+..+++ . .|..+.
T Consensus 182 ~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 182 YEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHH
Confidence 54433 23456677777776665544331 22223334556778889999999999999886543 3 344444
Q ss_pred HHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 276 SGLADNGRGNYAI-SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 276 ~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
.++.+-.+.-++. .+|....+.-....... ..=+.......-.+..-.++....+. |+++- +..+...|-....
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~-Rlplsvl~~eel~~~vdkyL~~~l~K-g~p~v---f~dl~SLyk~p~k 335 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEKYPRHECPR-RLPLSVLNGEELKEIVDKYLRPLLSK-GVPSV---FKDLRSLYKDPEK 335 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCcccccch-hccHHHhCcchhHHHHHHHHHHHhhc-CCCch---hhhhHHHHhchhH
Confidence 5554333333344 66666554421111111 11111222222334444555555554 66553 2333333322111
Q ss_pred HH----HHHHHHHhC-------------CCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012504 355 IE----EAYHIIRNM-------------PTEPNAVIL--RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASV 415 (462)
Q Consensus 355 ~~----~A~~~~~~~-------------~~~~~~~~~--~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 415 (462)
.+ -+..+...+ .++|....| ..++..+-..|++ +.|..+++.+...-|.-+..|..-+++
T Consensus 336 ~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~-~~A~~yId~AIdHTPTliEly~~KaRI 414 (700)
T KOG1156|consen 336 VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY-EVALEYIDLAIDHTPTLIELYLVKARI 414 (700)
T ss_pred hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH-HHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 11 111122222 114565555 4566788899999 999999999999999988999999999
Q ss_pred HhhcCCHHHHHHHHHHHhcCCC
Q 012504 416 SSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+...|++++|...+++.++.+.
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHhcCChHHHHHHHHHHHhccc
Confidence 9999999999999999887664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-05 Score=74.39 Aligned_cols=364 Identities=12% Similarity=0.139 Sum_probs=184.0
Q ss_pred CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHC-CCCCCcchHHHHHHHhhhhcCchhHHHHHHHH
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNFTYPFVVKACGRCLLIGIGGSVHSLI 127 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (462)
.++.++..+.+||. .|-.-+..+.++|++......|+..+.. .+.--...|...+......+-++.+..+++..
T Consensus 90 c~er~lv~mHkmpR-----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY 164 (835)
T KOG2047|consen 90 CFERCLVFMHKMPR-----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 56667777777776 6767777777788888888888777654 12223445666777777777777777777777
Q ss_pred HHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC----------ChhhHHHHHHHHHcCCCh---hHHHHHHHHhH
Q 012504 128 FKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR----------DVVSWSSMIAGFVACDSP---SDALKVFHRMK 194 (462)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~ 194 (462)
++.. +..-+--+..+++.+++++|-+.+..+... +-..|..+-....+.-+. -.+..+++.+.
T Consensus 165 Lk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 165 LKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 6543 222455667777778888877777766522 222344333333332221 12222222222
Q ss_pred HCCCCCCH--HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc----------------C-----
Q 012504 195 LANESPNS--VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC----------------G----- 251 (462)
Q Consensus 195 ~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~----- 251 (462)
. .-+|. ..+..|.+.|.+.|.++.|..+|++....- .+..-|..+.++|..- |
T Consensus 241 ~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 241 R--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred c--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh
Confidence 2 12332 245555556666666666666665554431 1222222222222210 1
Q ss_pred -ChHHHHHHHhhccCC---------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHH
Q 012504 252 -HVEKAFKVFNLMREK---------------NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD------SISFSAI 309 (462)
Q Consensus 252 -~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l 309 (462)
+++-...-|+.+... ++..|..-+. +..|+..+-+..+.++... +.|- ...|..+
T Consensus 317 ~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHH
Confidence 111112222222211 1122222111 2234555556666665543 2221 1234555
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---C---------------
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMPT---E--------------- 368 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~--------------- 368 (462)
...|...|+++.|..+|++..+. ..+-- ..+|..-..+=.+..+++.|+++.+.... .
T Consensus 394 aklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 55566666666666666666543 22111 33444444444556666666666665411 0
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHH
Q 012504 369 --PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMV 430 (462)
Q Consensus 369 --~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (462)
.+..+|..++...-..|-+ +....+++++..+.--.|.+....+..+....-++++.++|+
T Consensus 473 lhrSlkiWs~y~DleEs~gtf-estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTF-ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1223444444444455555 666666666666555555555555555555555555555555
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-06 Score=74.44 Aligned_cols=374 Identities=13% Similarity=0.029 Sum_probs=208.7
Q ss_pred CCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHH
Q 012504 48 ISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125 (462)
Q Consensus 48 ~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 125 (462)
|++++|...+.-+..+ |+...+-.|...+.-.|.+.+|..+-....+ ++..-..++....+.++-++-..+.+
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~ 145 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHS 145 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3666666666544322 5555555565555556666666655544321 23333344444555566555555544
Q ss_pred HHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCC--hhhHHH-HHHHHHcCCChhHHHHHHHHhHHCCCCCCH
Q 012504 126 LIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRD--VVSWSS-MIAGFVACDSPSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 202 (462)
.+... ..---+|.........+++|++++.++...+ -...|. +.-+|.+..-++-+.+++.-..+. .||+
T Consensus 146 ~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS 218 (557)
T KOG3785|consen 146 SLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS 218 (557)
T ss_pred HHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc
Confidence 44322 1222445566666677899999999987543 334443 334677777778777777776653 3444
Q ss_pred -HHHHHHHHHHhcc--cchHhHH------------HHHHHHHHhCC------------Cc-----hHhHHHHHHHHHHhc
Q 012504 203 -VTLVSLVSACTSL--INVRAGE------------SIHSYAVVNGL------------EL-----DVALGTALVEMYSKC 250 (462)
Q Consensus 203 -~~~~~l~~~~~~~--~~~~~a~------------~~~~~~~~~~~------------~~-----~~~~~~~l~~~~~~~ 250 (462)
...+.......+. |+..+.+ ...+.+.++++ -| -+..-..|+--|.+.
T Consensus 219 tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q 298 (557)
T KOG3785|consen 219 TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQ 298 (557)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccc
Confidence 3333332222221 2111110 11222222211 01 112223345557889
Q ss_pred CChHHHHHHHhhccCCChhhHHHHHHHHHHcC-------ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHH
Q 012504 251 GHVEKAFKVFNLMREKNLQSWTIMISGLADNG-------RGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEG 322 (462)
Q Consensus 251 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a 322 (462)
++..+|..+.+++....+.-|-.-.-.+...| ...-|.+.|.-.-+++...|.. .--.+..++.-..+++++
T Consensus 299 ~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddV 378 (557)
T KOG3785|consen 299 NDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDV 378 (557)
T ss_pred ccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999999998887655544333222333333 3344555555444444433322 233344455556678888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHH-HHHHHHHcCChHHHHHHHHHHHH
Q 012504 323 KNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE--PNAVILRS-FLGACRNHGQVLYLDDNLGKLLL 399 (462)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-l~~~~~~~~~~~~~a~~~~~~~~ 399 (462)
+.++..+..- +..|...-..+.++++..|.+.+|+++|-.+..+ .+..+|.. |.++|...+.+ +.|-. .++
T Consensus 379 l~YlnSi~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP-~lAW~---~~l 452 (557)
T KOG3785|consen 379 LTYLNSIESY--FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP-QLAWD---MML 452 (557)
T ss_pred HHHHHHHHHH--hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc-hHHHH---HHH
Confidence 8888888652 2333333335788888999999999999887542 35566654 45677888888 55544 444
Q ss_pred hcC-CCCCc-hHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 400 KLE-PELGA-NYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 400 ~~~-p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
+.+ |.+.. .....+.-|.+++.+--|-+.|+.+...++.|
T Consensus 453 k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 453 KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 433 33322 33345667788888888888888877766554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-07 Score=82.98 Aligned_cols=371 Identities=14% Similarity=0.064 Sum_probs=230.3
Q ss_pred cCCHHHHHHHhccC-C-CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC-cchHHHHHHHhhhhcCchhHHHH
Q 012504 47 SISLHFTRSLFNNL-P-VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD-NFTYPFVVKACGRCLLIGIGGSV 123 (462)
Q Consensus 47 ~~~~~~A~~~~~~~-~-~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 123 (462)
.|+++.|...|-+. . .++|-.-|..-..+|+..|++++|++=-.+-++ +.|+ +-.|...-.++.-.|++++|...
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 45899999988543 2 226777888899999999999998877666665 4566 34688888888888999999999
Q ss_pred HHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhc------CC-CC------ChhhHHHHHHHHHcC-------CCh
Q 012504 124 HSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEE------MP-VR------DVVSWSSMIAGFVAC-------DSP 183 (462)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------~~-~~------~~~~~~~l~~~~~~~-------~~~ 183 (462)
|..-++.. +.+...++.|..++... ..+.+.|.. +. .| ....|..++..+.+. .+.
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~~---~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLED---YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhHH---HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 98877764 33556666777666111 011111111 11 00 112333333332211 011
Q ss_pred hHHHHHHHHhHH--------C-------CCCC---------C-------------HHHHHHHHHHHhcccchHhHHHHHH
Q 012504 184 SDALKVFHRMKL--------A-------NESP---------N-------------SVTLVSLVSACTSLINVRAGESIHS 226 (462)
Q Consensus 184 ~~a~~~~~~m~~--------~-------~~~p---------~-------------~~~~~~l~~~~~~~~~~~~a~~~~~ 226 (462)
+...+..-.+.. . +..| . ..-...+.++.-+..+++.+.+-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111111110 0 0011 0 0123345566666677777888777
Q ss_pred HHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh----------hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 227 YAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ----------SWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
...... .+..-++....+|...|.+..+...-....+.+-. .+..+..+|.+.++++.++..|.+...
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 777765 56666677778888888887777766665543221 223344466667788888888888665
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHH
Q 012504 297 TGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTM-EHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVI 373 (462)
Q Consensus 297 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 373 (462)
....|+. ..+....+++........ -+.|.. .-...=...+.+.|++..|+..|.++.. +.|...
T Consensus 327 e~Rt~~~---------ls~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 327 EHRTPDL---------LSKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred hhcCHHH---------HHHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 4333322 122233444444443332 223332 1112225667788899999998888743 346778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
|..-.-+|.+.|.+ ..|..-.+...+++|+....|..-+.++....+|+.|.+.|++..+.+..
T Consensus 395 YsNRAac~~kL~~~-~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 395 YSNRAACYLKLGEY-PEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 88888888899999 88888888888899888888888888888888999999988888776643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-06 Score=80.47 Aligned_cols=398 Identities=13% Similarity=0.050 Sum_probs=245.5
Q ss_pred chhHHHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhcc-CCCC--CCccc-HHHHHHHHH
Q 012504 2 ISRHIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNN-LPVT--PPLFA-YNTLIRAYA 77 (462)
Q Consensus 2 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~-~~~~--~~~~~-y~~li~~~~ 77 (462)
|.+.+.-+|..||+++.+-+.|++....-+......+..-+-+...|.--.|..++++ ++.+ |+..+ +-..-..|.
T Consensus 325 i~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~ 404 (799)
T KOG4162|consen 325 IFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCI 404 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHH
Confidence 4578889999999999999999998876554333333333311223355556666643 3333 43333 333333443
Q ss_pred h-CCCchhHHHHHHHHHHC--CC--CCCcchHHHHHHHhhhh-----------cCchhHHHHHHHHHHhCCCCccchHhH
Q 012504 78 K-TSCSIESIKLFDEMLKT--GL--RPDNFTYPFVVKACGRC-----------LLIGIGGSVHSLIFKVGLDSDKYIGNT 141 (462)
Q Consensus 78 ~-~g~~~~a~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (462)
+ .+..+++++.-.+.... +. ...+..|..+--+|... ....++.+.++..++.+.. |+...-.
T Consensus 405 e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~ 483 (799)
T KOG4162|consen 405 ERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFY 483 (799)
T ss_pred hchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHH
Confidence 3 46677777766666552 11 11233344443333321 2345677788888877632 3333333
Q ss_pred HHHHHHhcCChhHHHHHHhcCC----CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc
Q 012504 142 LLRMYAACKEIDVAKAVFEEMP----VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN 217 (462)
Q Consensus 142 l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 217 (462)
+.--|+..++++.|.+..++.. ..+...|..|.-.+...+++.+|+.+.+.....- ..|......-+..-...++
T Consensus 484 lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 484 LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhccc
Confidence 4556788899999998888765 3478899999999999999999999998865531 1111111111111222344
Q ss_pred hHhHHHHHHHHHHh---------------------CC-------CchHhHHHHHHHHHH---hcCChHHHHHHHhhccCC
Q 012504 218 VRAGESIHSYAVVN---------------------GL-------ELDVALGTALVEMYS---KCGHVEKAFKVFNLMREK 266 (462)
Q Consensus 218 ~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~ 266 (462)
.+++......+... |+ .....++..+..... +.-..+.....+.....+
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~ 642 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGP 642 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCC
Confidence 44443333222211 10 011122222221111 111111111111111122
Q ss_pred C------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-h
Q 012504 267 N------LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-M 339 (462)
Q Consensus 267 ~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 339 (462)
+ ...|......+...+..++|...+.+.... .+-....|......+...|..++|...|.... .+.|+ +
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv 718 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHV 718 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCc
Confidence 2 124666677888899999999888887764 23345567777677888899999999999887 45665 7
Q ss_pred hHHHHHHHHHHhcCCHHHHHH--HHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 340 EHYGCMVDMLGRAGLIEEAYH--IIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~A~~--~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
....++..++.+.|+..-|.. ++.++.. +.+...|..+...+.+.|+. +.|-..|..+.++.+.+|
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~-~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS-KQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch-HHHHHHHHHHHhhccCCC
Confidence 788899999999999888877 8888743 45789999999999999999 999999999999987776
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-07 Score=76.81 Aligned_cols=374 Identities=10% Similarity=0.014 Sum_probs=223.5
Q ss_pred CHHHHHHHhccCCCC-C-CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHH-HHHhhhhcCchhHHHHHH
Q 012504 49 SLHFTRSLFNNLPVT-P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFV-VKACGRCLLIGIGGSVHS 125 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~-~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~ 125 (462)
++++|.+++..-.+. | +....+.|..+|....++..|-+.++++-.. -|...-|... ...+-+.+.+..|..+..
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAF 102 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 778888877655443 3 6777888888888888999999999988764 4555555332 233556677888888877
Q ss_pred HHHHhCCCCccc--hHhHHHHHHHhcCChhHHHHHHhcCCC-CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH
Q 012504 126 LIFKVGLDSDKY--IGNTLLRMYAACKEIDVAKAVFEEMPV-RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 126 ~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 202 (462)
.|... |+.. ....-.......+++..+..++++.+. .+..+.+...-...+.|+++.|++-|+...+-+---..
T Consensus 103 ~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 103 LLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 76542 1111 111111123456888889999988884 55666666666667889999999999988765433444
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHhCCC-------------ch---------------HhHHHHHHHHHHhcCChH
Q 012504 203 VTLVSLVSACTSLINVRAGESIHSYAVVNGLE-------------LD---------------VALGTALVEMYSKCGHVE 254 (462)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~---------------~~~~~~l~~~~~~~~~~~ 254 (462)
..|+..+. ..+.|+.+.|.+...+++++|++ || +..+|.-...+.+.|+++
T Consensus 180 lAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~e 258 (459)
T KOG4340|consen 180 LAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYE 258 (459)
T ss_pred hHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHH
Confidence 56665554 44678889999998888887652 11 122333344567889999
Q ss_pred HHHHHHhhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 012504 255 KAFKVFNLMRE-----KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 255 ~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
.|.+.+-.|.. -|++|...+.-. -..+++.+..+-+.-+...+. ....||..++-.||+..-++.|-.++.+-
T Consensus 259 AA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 259 AAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 99999998874 366666554322 223455555555555565543 34568888888899988888888877654
Q ss_pred HHhcCCCCchhHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCh---HHHHHHHHHHHHhcCCC
Q 012504 330 ARVYNIKPTMEHYGCMVDMLGR-AGLIEEAYHIIRNMPTEPNAVILRSFLGACR-NHGQV---LYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~---~~~a~~~~~~~~~~~p~ 404 (462)
....-.-.+...|+ |++++.- .-..++|.+-++.+...-....-...+.... +..+- ...+..-++..+++-
T Consensus 337 ~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y-- 413 (459)
T KOG4340|consen 337 AHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY-- 413 (459)
T ss_pred cchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--
Confidence 32100011233333 3334332 3355666655554422111111111122211 11111 011222233333321
Q ss_pred CCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 405 LGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
..+...-++.|.+..++..+.++|+.-.+
T Consensus 414 -LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 414 -LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred -HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 12556677788899999999999986554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-06 Score=79.91 Aligned_cols=194 Identities=15% Similarity=-0.007 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhh
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGL-KPDS--ISFSAILSACS 314 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~ll~~~~ 314 (462)
..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444555666666666666666553 2334555556666666666666666666555321 1221 22334555566
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHH-H--HHHHHHHhcCC------HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHY-G--CMVDMLGRAGL------IEEAYHIIRNM-PTEPNAVILRSFLGACRNH 384 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~~~------~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~ 384 (462)
..|++++|..++++........+..... + .++.-+...|. ++.+....... ..............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 6666666666666654221111111111 1 11222222232 22222111111 1111111112345566777
Q ss_pred CChHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 385 GQVLYLDDNLGKLLLKLEPE---------LGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 385 ~~~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
|+. +.|...++.+....-. ........+.++...|++++|.+.+......
T Consensus 278 ~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDK-DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCH-HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778 7788888776652211 2334455666777899999999998877644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-06 Score=77.26 Aligned_cols=197 Identities=7% Similarity=-0.131 Sum_probs=107.6
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCC-CCCcchHH-HHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhH--
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNFTYP-FVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNT-- 141 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 141 (462)
...|..+...+...|+.+.+.+.+....+... .++..... .....+...|++++|...++...+..+. +...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhH
Confidence 34566666667777778777776666654322 12221111 1122345668888888888887776422 3223221
Q ss_pred -HHHHHHhcCChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc
Q 012504 142 -LLRMYAACKEIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN 217 (462)
Q Consensus 142 -l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 217 (462)
........+..+.+.+.++..... .......+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 111112234555555555442221 12233344456667777777777777776643 3344555666666667777
Q ss_pred hHhHHHHHHHHHHhCCC-ch--HhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012504 218 VRAGESIHSYAVVNGLE-LD--VALGTALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
+++|...+++....... ++ ...+..+...+...|++++|..++++..
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77777777666654311 12 1233455666666677777766666654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-06 Score=73.62 Aligned_cols=313 Identities=11% Similarity=0.051 Sum_probs=175.7
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHH---HhhhhcCchhHHHHHHHHHHhCCCCccch-HhH
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVK---ACGRCLLIGIGGSVHSLIFKVGLDSDKYI-GNT 141 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ 141 (462)
+.----+...+..+|++..|+.-|...++- |+..|..+.+ .|...|+-.-|..-++..++. +||-.. -..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 333445666777788888888888877653 4444554443 356667777777766666654 444321 111
Q ss_pred HHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhH
Q 012504 142 LLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAG 221 (462)
Q Consensus 142 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 221 (462)
-...+.+.|.++.|+.-|+.+...++. .|...+|.+-+.... ........+..+...|+...|
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhH
Confidence 223456677777777777666543221 011111111110000 001122334445566777778
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhcc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012504 222 ESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMR---EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTG 298 (462)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 298 (462)
+.....+++.. +.+...+..-..+|...|++..|+.-++... ..+...+-.+-..+...|+.+.++...++-.+.
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 88777777765 5677777777788888888888776555443 455666666677777778888877777776663
Q ss_pred CCCCHHH-H---HHH---H------HHhhccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhcCCHHHHHH
Q 012504 299 LKPDSIS-F---SAI---L------SACSHLGLVDEGKNYFDEMARVYNIKPT-----MEHYGCMVDMLGRAGLIEEAYH 360 (462)
Q Consensus 299 ~~p~~~~-~---~~l---l------~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~ 360 (462)
.||... | ..+ . ......+++.++....+...+. .|. ...+..+-.++...|++.+|++
T Consensus 253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHH
Confidence 455432 1 111 0 1122344555555555555432 222 2233344555566666666666
Q ss_pred HHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 361 IIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 361 ~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
...++.. .| |+.++..=..+|.-...+ +.|+.-|+.+.+.++++..+
T Consensus 329 qC~evL~~d~~dv~~l~dRAeA~l~dE~Y-D~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMY-DDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHhcCcccHHH
Confidence 6665532 23 355555555666666666 67777777777666666533
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-06 Score=89.77 Aligned_cols=322 Identities=11% Similarity=-0.006 Sum_probs=203.2
Q ss_pred hhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC----CC----C----hhhHHHHHHHHHcC
Q 012504 113 RCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP----VR----D----VVSWSSMIAGFVAC 180 (462)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~----~----~~~~~~l~~~~~~~ 180 (462)
..|+++.+..+++.+.......+..........+...|+++++...++... .. + ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 345555555555443211111223333444556677899999888887543 11 1 11222233456678
Q ss_pred CChhHHHHHHHHhHHCCCCCCH----HHHHHHHHHHhcccchHhHHHHHHHHHHhCC---Cc--hHhHHHHHHHHHHhcC
Q 012504 181 DSPSDALKVFHRMKLANESPNS----VTLVSLVSACTSLINVRAGESIHSYAVVNGL---EL--DVALGTALVEMYSKCG 251 (462)
Q Consensus 181 ~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~ 251 (462)
|++++|...+++....-...+. .....+...+...|+++.|...+.+.....- .+ .......+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999987663111121 2344555667789999999999888775321 11 2234566677888999
Q ss_pred ChHHHHHHHhhccC----C---C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhhcc
Q 012504 252 HVEKAFKVFNLMRE----K---N----LQSWTIMISGLADNGRGNYAISLFAKMIQT--GLKPD--SISFSAILSACSHL 316 (462)
Q Consensus 252 ~~~~a~~~~~~~~~----~---~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~~~~~~ 316 (462)
+++.|...+++... . + ...+..+...+...|++++|...+.+.... ...+. ...+..+.......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 99999998877542 1 1 123445566677789999999999887653 11122 23444455677788
Q ss_pred CcHHHHHHHHHHHHHhcCCCCchhHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHcC
Q 012504 317 GLVDEGKNYFDEMARVYNIKPTMEHY-----GCMVDMLGRAGLIEEAYHIIRNMPTE--PNA----VILRSFLGACRNHG 385 (462)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~~~~ 385 (462)
|+.+.|...+...............+ ...+..+...|+.+.|.+.+...... ... ..+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999988885431111111111 11224455688999999998776432 111 12345667788999
Q ss_pred ChHHHHHHHHHHHHhcC------CCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 386 QVLYLDDNLGKLLLKLE------PELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
+. ++|...++++.... +....+...++.++.+.|+.++|...+.+..+.
T Consensus 706 ~~-~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 706 QF-DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CH-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99 99999999987642 122346677888999999999999999988754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.9e-08 Score=84.01 Aligned_cols=217 Identities=11% Similarity=0.073 Sum_probs=118.1
Q ss_pred HHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCC-CHHHHHHHHHHHhcccchH
Q 012504 141 TLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESP-NSVTLVSLVSACTSLINVR 219 (462)
Q Consensus 141 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~ 219 (462)
.+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-++.....+..+ +..........+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 344555566665555444444444444444444433332234444544444443332222 2222222334455667777
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCCh-hhHHHHHHHHH----HcCChHHHHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNL-QSWTIMISGLA----DNGRGNYAISLFAKM 294 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~----~~~~~~~a~~~~~~m 294 (462)
.|.++++.. .+.......+.+|.+.++++.|.+.++.|.+.+. .+...+..++. -.+.+.+|..+|+++
T Consensus 120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 776666432 3345555667777777777777777777775322 23333333332 234677888888887
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhCC
Q 012504 295 IQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLI-EEAYHIIRNMP 366 (462)
Q Consensus 295 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~ 366 (462)
.+. ..+++.+.+.+..++...|++++|..++.+.... -+-++.+...++-+....|+. +.+.+.+.++.
T Consensus 194 ~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 194 SDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred Hhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 654 4566777777777777888888888887776542 233456666677666666766 55667777764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-06 Score=79.09 Aligned_cols=313 Identities=13% Similarity=0.073 Sum_probs=162.6
Q ss_pred hcChhHHHHHHHHHHHh--------CCCCchhhhhhHhhhhhcC-CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCch
Q 012504 13 SKTVHHLHQLHTLFLKT--------SLDHNTCIISRFILTSLSI-SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 13 ~~~~~~a~~~~~~~~~~--------g~~~~~~~~~~ll~~~~~~-~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 83 (462)
-|++..++.+|+.+.-. |--.+..-..+++ .+.+ ++.+|..+|-+-.. -...|..|....+|+
T Consensus 503 i~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~l--ail~kkfk~ae~ifleqn~------te~aigmy~~lhkwd 574 (1636)
T KOG3616|consen 503 IGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAML--AILEKKFKEAEMIFLEQNA------TEEAIGMYQELHKWD 574 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHH--HHHHhhhhHHHHHHHhccc------HHHHHHHHHHHHhHH
Confidence 36777777776654421 2222222333344 4444 78888888755432 223466677777788
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 84 ESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 84 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
+|+.+-+. .|.+.-...-.+.++++...|+-++|-++- .+..--.+.|..|.+.|.+.+|.+....-.
T Consensus 575 e~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~ 642 (1636)
T KOG3616|consen 575 EAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDE 642 (1636)
T ss_pred HHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHH
Confidence 87776543 232211122233445555556555554321 111111345777888888777665542211
Q ss_pred --CCChhhHHHHHHHHHc-------------CCChhHHHHHHHHhHHC---------CCCCCHHHHH-HHHHHHhcccch
Q 012504 164 --VRDVVSWSSMIAGFVA-------------CDSPSDALKVFHRMKLA---------NESPNSVTLV-SLVSACTSLINV 218 (462)
Q Consensus 164 --~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~m~~~---------~~~p~~~~~~-~l~~~~~~~~~~ 218 (462)
..|......+..++.+ ..++++|++.|++--.- .++..+++.. .....+...|++
T Consensus 643 ~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~ 722 (1636)
T KOG3616|consen 643 ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQL 722 (1636)
T ss_pred HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhH
Confidence 2233333333333333 33444444444321100 0111111110 011112222333
Q ss_pred HhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh--hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 219 RAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ--SWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+.|..-|-+.. ..-..+.+......|.+|+.+++.+...++. -|..+.+.|...|+++.|.++|.+.-
T Consensus 723 daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~- 792 (1636)
T KOG3616|consen 723 DAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD- 792 (1636)
T ss_pred HHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-
Confidence 33332221111 1122345556667788888888877765543 47777788888888888888876532
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 297 TGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 297 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
.++-.|..|.+.|+++.|.++-.+.. |.......|..-..-+-+.|++.+|.++|-.+.
T Consensus 793 --------~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 793 --------LFKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG 851 (1636)
T ss_pred --------hhHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc
Confidence 24555677888888888877766553 444555666666666667777777777766654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-07 Score=75.37 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=104.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456777777665444322211 11 012235666777777777665 335567788888888888888
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 355 IEEAYHIIRNMPT--EPNAVILRSFLGAC-RNHGQ--VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 355 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~-~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
+++|...|++... +.+...+..+..++ ...|+ . +.|.++++++.+.+|+++.++..++..+.+.|++++|+..|
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~-~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMT-PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888887643 34566777777653 56666 5 88888888888888888888888888888888888888888
Q ss_pred HHHhcCCCcc
Q 012504 430 VAINQKGLNK 439 (462)
Q Consensus 430 ~~~~~~~~~~ 439 (462)
+++.+.....
T Consensus 168 ~~aL~l~~~~ 177 (198)
T PRK10370 168 QKVLDLNSPR 177 (198)
T ss_pred HHHHhhCCCC
Confidence 8887766543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-06 Score=72.15 Aligned_cols=370 Identities=9% Similarity=-0.026 Sum_probs=201.7
Q ss_pred CHHHHHHHhccCCCC--CCc-ccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHH
Q 012504 49 SLHFTRSLFNNLPVT--PPL-FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~--~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 125 (462)
++..|..+++--... -.. .+--.+..++.+.|++++|+..|..+.+.. .|+...+..+.-+..-.|.+.+|.++..
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 666676666432211 111 122234456667788888888887776643 4555566566666666677777776654
Q ss_pred HHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHH
Q 012504 126 LIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTL 205 (462)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 205 (462)
.. +.++-....|+..-.+.++-++-..+-+.+... ..---+|.+..-..-.+++|+++|.+....+ |+-...
T Consensus 116 ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~al 187 (557)
T KOG3785|consen 116 KA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIAL 187 (557)
T ss_pred hC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhh
Confidence 32 112223334445555666666655555554432 1222334444344457889999999987653 555554
Q ss_pred HHHH-HHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc--CChHHH--HHHHhhcc----------------
Q 012504 206 VSLV-SACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC--GHVEKA--FKVFNLMR---------------- 264 (462)
Q Consensus 206 ~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a--~~~~~~~~---------------- 264 (462)
+.-+ -+|.+..-++-+.++++-..+.- +.++...|.......+. |+..+. .++-+...
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv 266 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV 266 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence 4433 34556666777777776655542 33444444443333322 221111 11111111
Q ss_pred ---------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-----hccCcHHHHHH
Q 012504 265 ---------------EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC-----SHLGLVDEGKN 324 (462)
Q Consensus 265 ---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~ 324 (462)
+.=+.+--.++--|.+.++..+|..+.+++.. ..|-......+..+- .......-|.+
T Consensus 267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 11112333445556777888888877665432 233333333333221 12223555666
Q ss_pred HHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 325 YFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 325 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.|+-.-.. +..-| ..--.++...+.-..++++.+..++.+.. ..|...--.+..+++..|++ .+|+++|-++...
T Consensus 345 ffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny-~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNY-VEAEELFIRISGP 422 (557)
T ss_pred HHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcCh-HHHHHHHhhhcCh
Confidence 66555332 33322 22334455555666678888887777653 12323333467888889999 9999988877766
Q ss_pred CCCCCchH-HHHHHHHhhcCCHHHHHHHHHHH
Q 012504 402 EPELGANY-VLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 402 ~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
.-.+..+| ..|+++|.++|..+-|+.++-++
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 53333344 45788999999999998877554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.7e-07 Score=76.58 Aligned_cols=182 Identities=13% Similarity=0.010 Sum_probs=115.3
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhccCC---Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-HHHH
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMREK---NL---QSWTIMISGLADNGRGNYAISLFAKMIQTGLK-PDS-ISFS 307 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~ 307 (462)
....+..++..+...|++++|...|+++.+. +. .++..+..++...|++++|...++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445555666667777777777777766532 11 34566667777777777777777777764221 111 1233
Q ss_pred HHHHHhhc--------cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 012504 308 AILSACSH--------LGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFL 378 (462)
Q Consensus 308 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~ 378 (462)
.+..++.. .|+.+.|.+.++.+... .|+ ...+..+..... ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHH
Confidence 33333433 36788888888888764 333 223222211110 00000 01112456
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
..+...|++ ..|...++.+.+..|+++ ..+..++.++...|++++|..+++.+....
T Consensus 174 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLKRGAY-VAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHcCCh-HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 678899999 999999999999877654 688899999999999999999999887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.8e-07 Score=89.66 Aligned_cols=200 Identities=15% Similarity=0.130 Sum_probs=159.4
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-H
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK--------NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS-I 304 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~ 304 (462)
|-+...|-..|......++.++|+++.++.... -...|.++++.-..-|.-+...++|+++.+. .|+ .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 445567778888888889999999998887631 2346777777777778788888899988874 243 3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPNAVILRSFLGA 380 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~ 380 (462)
.|..|...|.+.+.+++|.++++.|.+.++ -...+|...+..+.+.++-+.|..++.++.. +.........+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 677888888999999999999999988655 5667888889999998888888888887632 2234555556666
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
-.+.|+. +.+..+|+..+.-.|.-.+.|..+++.-.+.|+.+.+..+|++.+..++.+
T Consensus 1610 EFk~GDa-eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1610 EFKYGDA-ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HhhcCCc-hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 7788999 999999999999899888899999999999999999999999998887765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-06 Score=71.83 Aligned_cols=197 Identities=14% Similarity=0.078 Sum_probs=108.9
Q ss_pred CCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--CChhhHHH-
Q 012504 96 GLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--RDVVSWSS- 172 (462)
Q Consensus 96 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~- 172 (462)
|+.....-+.+++..+.+..++..+.+++..-.+..+ .+....+.|..+|....++..|-..++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 3443444566666667777777777777666555532 2445556667777777777777777777653 22222221
Q ss_pred HHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH--HhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 012504 173 MIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSA--CTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC 250 (462)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 250 (462)
-...+-+.+.+..|+++...|... |+...-..-+.+ .-..+++..+..+.++....| +..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 233455667777777777666542 222222222222 224456666666655554322 333444445555666
Q ss_pred CChHHHHHHHhhccCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012504 251 GHVEKAFKVFNLMREK----NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLK 300 (462)
Q Consensus 251 ~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 300 (462)
|+++.|.+-|+...+- ....|+..+.. .+.++++.|++...+.+++|++
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 7777777777666542 23455544433 3446667777777776666653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-05 Score=67.99 Aligned_cols=295 Identities=8% Similarity=0.017 Sum_probs=185.8
Q ss_pred cCCHHHHHHHhccCCCCCCcccHHHH---HHHHHhCCCchhHHHHHHHHHHCCCCCCcchHH-HHHHHhhhhcCchhHHH
Q 012504 47 SISLHFTRSLFNNLPVTPPLFAYNTL---IRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYP-FVVKACGRCLLIGIGGS 122 (462)
Q Consensus 47 ~~~~~~A~~~~~~~~~~~~~~~y~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~ 122 (462)
.|++.+|+.-|...-. .|...|.++ ...|...|+...|+.=+...++ .+||-..-. .--..+.+.|.++.|..
T Consensus 51 ~~Q~sDALt~yHaAve-~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~ 127 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVE-GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEA 127 (504)
T ss_pred hhhHHHHHHHHHHHHc-CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHH
Confidence 4588899988877665 566666666 4678899999999999999887 477754322 12234678999999999
Q ss_pred HHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH
Q 012504 123 VHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 202 (462)
-|+..+.+... ..+ ...++.+.--.++-+.+ ...+..+...|+...|+.....+.+.. +-|.
T Consensus 128 DF~~vl~~~~s--~~~---~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 128 DFDQVLQHEPS--NGL---VLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HHHHHHhcCCC--cch---hHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 99999987532 211 11222222112221111 123334455677777777777766642 3355
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh------hHHHH--
Q 012504 203 VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ------SWTIM-- 274 (462)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~l-- 274 (462)
..+..-..+|...|.+..|+.=++..-+.. ..+...+..+-..+...|+.+.++..+++..+-|+. .|..+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 556566666677777777666666665554 334444445556666667777777666666543321 12211
Q ss_pred -------HHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHH
Q 012504 275 -------ISGLADNGRGNYAISLFAKMIQTGLKPDSIS---FSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYG 343 (462)
Q Consensus 275 -------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 343 (462)
+......++|.++++..+...+......... +..+-.++..-+++.+|++.-.++. .+.|+ ..++.
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~ 345 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHH
Confidence 2334556777788877777776543322223 3344455667788888888888887 44555 77888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
.-..+|.-...++.|+.-|+...
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Confidence 88888888888888888888764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-05 Score=71.06 Aligned_cols=393 Identities=12% Similarity=-0.045 Sum_probs=230.4
Q ss_pred hhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccC-CCCCC-cccHHHHHHHHHhCCCchhHHHH
Q 012504 12 LSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNL-PVTPP-LFAYNTLIRAYAKTSCSIESIKL 88 (462)
Q Consensus 12 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~-~~~~~-~~~y~~li~~~~~~g~~~~a~~~ 88 (462)
+.|+++.|...|...+..... +...|+.=. .+...|++++|++=-.+- ...|+ ...|+....++.-.|++++|+..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred ccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 448999999999998865422 444444444 233334555555433222 12233 45699999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHhhhh---cCchhHHHHHHHHHHhC---CCCccchHhHHHHHH----------HhcCCh
Q 012504 89 FDEMLKTGLRPDNFTYPFVVKACGRC---LLIGIGGSVHSLIFKVG---LDSDKYIGNTLLRMY----------AACKEI 152 (462)
Q Consensus 89 ~~~m~~~g~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~----------~~~~~~ 152 (462)
|.+-++.... +...++.+..++... ++.-.--.++....... .......|..++..+ ....++
T Consensus 93 y~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 93 YSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 9998886322 455566666665211 11000011111111000 000011111111111 111111
Q ss_pred hHHHHHHhcCC----------------CC------------C----------hhhHHHHHHHHHcCCChhHHHHHHHHhH
Q 012504 153 DVAKAVFEEMP----------------VR------------D----------VVSWSSMIAGFVACDSPSDALKVFHRMK 194 (462)
Q Consensus 153 ~~A~~~~~~~~----------------~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 194 (462)
-.+...+.... .| | ..-...+.+...+..++..|++-+....
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12222221110 00 1 1135567777788889999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHh-------HHHHHHHHHHhcCChHHHHHHHhhccCCC
Q 012504 195 LANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVA-------LGTALVEMYSKCGHVEKAFKVFNLMREKN 267 (462)
Q Consensus 195 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 267 (462)
... -+..-++....++...|.............+.|.. ... .+..+..+|.+.++++.++..|++...+.
T Consensus 252 el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 252 ELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred hHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 753 44444555666788888887777776666665522 122 22234456777888999999998855321
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMV 346 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 346 (462)
.. -....+....+++........-. .|... -...-...+.+.|++..|...|.+++.. -+.|...|....
T Consensus 329 Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRA 399 (539)
T KOG0548|consen 329 RT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRA 399 (539)
T ss_pred cC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHH
Confidence 11 11222334445555554444332 33321 2222245677889999999999998874 355688888888
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 347 DMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
-+|.+.|.+..|+.-.+.... ++....|.--..++....++ +.|...|++.++.+|++......+.+++...
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y-dkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY-DKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 899999999988887766643 23345555555666777788 9999999999999998887777777666543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.2e-07 Score=82.15 Aligned_cols=247 Identities=14% Similarity=0.064 Sum_probs=186.1
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHH
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEK 255 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (462)
-+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+.+.++.. +.+..+...|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4578899999999999988764 4467789999999999999999999999999886 6678888899999999999999
Q ss_pred HHHHHhhccCCCh-hhHHHHH---------HHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 012504 256 AFKVFNLMREKNL-QSWTIMI---------SGLADNGRGNYAISLFAKMIQ-TGLKPDSISFSAILSACSHLGLVDEGKN 324 (462)
Q Consensus 256 a~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 324 (462)
|.+.+++.....+ ..|.... ..+.....+.+..++|-++.. .+..+|+.....|.-.|...|++++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 9999987742111 0110000 112222334455666666554 4544677777778778889999999999
Q ss_pred HHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 325 YFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 325 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.|+.++. +.| |...||.|.-.++...+.++|+..|.++.. +|. +.+...|..+|...|.+ ++|...|-.++.+
T Consensus 452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y-kEA~~hlL~AL~m 527 (579)
T KOG1125|consen 452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY-KEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH-HHHHHHHHHHHHh
Confidence 9999985 355 588999999999999999999999999854 554 66777889999999999 9999999888876
Q ss_pred CCC-----CC-----chHHHHHHHHhhcCCHHHHHHH
Q 012504 402 EPE-----LG-----ANYVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 402 ~p~-----~~-----~~~~~l~~~~~~~g~~~~A~~~ 428 (462)
.+. +. .+|..|=.++...++.+-+.++
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 543 11 3566666666667776655443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.1e-05 Score=72.30 Aligned_cols=381 Identities=10% Similarity=0.074 Sum_probs=204.3
Q ss_pred HHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcC--CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhH
Q 012504 9 LIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSI--SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIES 85 (462)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~--~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a 85 (462)
++..|+.-..-+..-+-+++ +.|...|+.++ --..|. -++.... -.+|+..|....+.-+.++...+-+.+-
T Consensus 929 lI~vcNeNSlfK~~aRYlv~---R~D~~LW~~VL~e~n~~rRqLiDqVv~--tal~E~~dPe~vS~tVkAfMtadLp~eL 1003 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVE---RSDPDLWAKVLNEENPYRRQLIDQVVQ--TALPETQDPEEVSVTVKAFMTADLPNEL 1003 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHh---ccChHHHHHHHhccChHHHHHHHHHHH--hcCCccCChHHHHHHHHHHHhcCCcHHH
Confidence 34455554444555555554 34778888888 221111 1111111 2345557777788888999999999999
Q ss_pred HHHHHHHHHCCCCC--CcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHH----
Q 012504 86 IKLFDEMLKTGLRP--DNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVF---- 159 (462)
Q Consensus 86 ~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~---- 159 (462)
+++++++.-.+-.. +...-+.++-...+ -+..+..++.+.+-..+ .| .+...+...+-+++|..+|
T Consensus 1004 IELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1004 IELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred HHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHhc
Confidence 99999987532111 11112223322222 23334444444333221 11 1122222333333333333
Q ss_pred -----------------------hcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 012504 160 -----------------------EEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI 216 (462)
Q Consensus 160 -----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 216 (462)
++.. .+..|..+..+-.+.|...+|++-|-+. .|+..|..+++.+.+.|
T Consensus 1076 ~n~~A~~VLie~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1076 MNVSAIQVLIENIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTG 1147 (1666)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcC
Confidence 3333 2356778888888888888887766432 46667888888888888
Q ss_pred chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC-----------------------CChhhHHH
Q 012504 217 NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE-----------------------KNLQSWTI 273 (462)
Q Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------------~~~~~~~~ 273 (462)
.+++-.+++....+..-.|... ..|+-+|++.+++.+.++++.--.. .++.-|..
T Consensus 1148 ~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~ 1225 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAK 1225 (1666)
T ss_pred cHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHH
Confidence 8888888777776665444433 4567778887777766655432110 12233555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
|...+...|+++.|.+.-++. .+..||..+-.+|...+.+.-| ++... ++-....-...++..|...|
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcC
Confidence 555555666666555443332 1445666666666655544332 22211 22233444566677777777
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-cCCCCCchHHHHHHHHhhcCCHHHHHHHHH
Q 012504 354 LIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK-LEPELGANYVLAASVSSLSGNWDTAAELMV 430 (462)
Q Consensus 354 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 430 (462)
-+++.+.+++.... +.....|..|.-.|.+- ++ ++..+.++.... .+ .-.+++++..+.-|.+..=+|.
T Consensus 1294 yFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp-~km~EHl~LFwsRvN------ipKviRA~eqahlW~ElvfLY~ 1365 (1666)
T KOG0985|consen 1294 YFEELISLLEAGLGLERAHMGMFTELAILYSKY-KP-EKMMEHLKLFWSRVN------IPKVIRAAEQAHLWSELVFLYD 1365 (1666)
T ss_pred cHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CH-HHHHHHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766521 33444555555555443 23 333333333322 11 1135566666666666666555
Q ss_pred HH
Q 012504 431 AI 432 (462)
Q Consensus 431 ~~ 432 (462)
.-
T Consensus 1366 ~y 1367 (1666)
T KOG0985|consen 1366 KY 1367 (1666)
T ss_pred hh
Confidence 43
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-05 Score=64.27 Aligned_cols=250 Identities=15% Similarity=0.076 Sum_probs=162.3
Q ss_pred HHhcCChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHH-
Q 012504 146 YAACKEIDVAKAVFEEMPV--RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGE- 222 (462)
Q Consensus 146 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~- 222 (462)
+.-.|++..++..-+.... .+...-.-+.++|...|.+..... +.+... .|....+..+.......++.+...
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHH
Confidence 3344566665555444432 233334445566666666554332 222222 334444444444444444444433
Q ss_pred HHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012504 223 SIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD 302 (462)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 302 (462)
.+.+.+.......+......-...|+..|++++|.+..+. -.+......=+..+.+..+++-|.+.+++|.+- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~--~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL--GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 3344444443344444444556678899999999999888 334444444466777888999999999999863 25
Q ss_pred HHHHHHHHHHhhc----cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 012504 303 SISFSAILSACSH----LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRS 376 (462)
Q Consensus 303 ~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 376 (462)
..|.+.|..++.+ .+...+|.-+|+++.. ..+|++.+.+...-++...|++++|..++++... ..++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5677777777654 4568899999999976 5788888999888889999999999999998743 356777777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++..-...|...+...+.+.......|..+
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 776666666653666777778888888775
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-05 Score=73.34 Aligned_cols=354 Identities=10% Similarity=0.004 Sum_probs=210.5
Q ss_pred CchhhhhhHh---hhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHC-C--------CCCC
Q 012504 33 HNTCIISRFI---LTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-G--------LRPD 100 (462)
Q Consensus 33 ~~~~~~~~ll---~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~ 100 (462)
-|..+-.+++ ++-.-|+++.|.+-...+ .+...|..|.+.+.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I---kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI---KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH---hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 3566666777 455556999998887777 45678999999999999999888887777542 1 1222
Q ss_pred cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC-ChhhHHHHHHHHHc
Q 012504 101 NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR-DVVSWSSMIAGFVA 179 (462)
Q Consensus 101 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~ 179 (462)
.+=.-+.-.....|.+++|+.+|++..+.+ .|=..|-..|.+++|.++-+.-..- =..||..-...+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222223333467899999999999887763 3445677889999998887654321 22356666666667
Q ss_pred CCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHH
Q 012504 180 CDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKV 259 (462)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 259 (462)
.++.+.|++.|++... |--..+..|. .++...+++.+.+ .+...|.--..-....|+.+.|+.+
T Consensus 871 r~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred hccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHH
Confidence 7889999998876432 1111111111 1222222222222 2334555555556677888888888
Q ss_pred HhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC-CC--
Q 012504 260 FNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN-IK-- 336 (462)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~-- 336 (462)
|...+. |-++++..|-.|+.++|-++-++- -|......+.+.|...|++.+|..+|.+...-.+ +.
T Consensus 935 Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlc 1003 (1416)
T KOG3617|consen 935 YSSAKD-----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLC 1003 (1416)
T ss_pred HHHhhh-----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876543 566677777788888887765542 2555566677778888888888888777642100 00
Q ss_pred CchhHHHHHHHHHHhc--CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----------HhcCC-
Q 012504 337 PTMEHYGCMVDMLGRA--GLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLL----------LKLEP- 403 (462)
Q Consensus 337 ~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~----------~~~~p- 403 (462)
.....-..|....... .+.-.|.++|++.+.. +...+..|-+.|.+ .+|.++.=+- ..+.|
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~-~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMI-GKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcch-HHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 0000001122222111 2333445555555421 12223446666666 6555543221 12333
Q ss_pred CCCchHHHHHHHHhhcCCHHHHHHHHHHH
Q 012504 404 ELGANYVLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 404 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
.||.....-+..+....++++|..++-..
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566677777777888888888776544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=72.37 Aligned_cols=101 Identities=7% Similarity=-0.158 Sum_probs=46.0
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQV 387 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 387 (462)
...+...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|+.... +.+...+..+..++...|+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3344444555555555554443 1122344444444444455555555555544421 22344444444444445555
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 388 LYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
++|...++.+.+..|+++..+...+
T Consensus 109 -~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 109 -GLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred -HHHHHHHHHHHHhCCCChHHHHHHH
Confidence 5555555555555554444444333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-05 Score=79.85 Aligned_cols=328 Identities=10% Similarity=-0.065 Sum_probs=205.8
Q ss_pred HHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCC------Cc--cchHhHHHHHHH
Q 012504 76 YAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLD------SD--KYIGNTLLRMYA 147 (462)
Q Consensus 76 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~ 147 (462)
....|+++.+...++.+.......+..........+...|+++++..++......-.. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445666666666555422111112222333344456778999999998887654111 11 112223344566
Q ss_pred hcCChhHHHHHHhcCCC----CCh----hhHHHHHHHHHcCCChhHHHHHHHHhHHCCC---CCC--HHHHHHHHHHHhc
Q 012504 148 ACKEIDVAKAVFEEMPV----RDV----VSWSSMIAGFVACDSPSDALKVFHRMKLANE---SPN--SVTLVSLVSACTS 214 (462)
Q Consensus 148 ~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~ 214 (462)
..|++++|...+++... .+. .+.+.+...+...|++++|...+++.....- .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999998887542 221 2445666677889999999999988764211 111 2344556667888
Q ss_pred ccchHhHHHHHHHHHHh----CCC--c-hHhHHHHHHHHHHhcCChHHHHHHHhhccC------C--ChhhHHHHHHHHH
Q 012504 215 LINVRAGESIHSYAVVN----GLE--L-DVALGTALVEMYSKCGHVEKAFKVFNLMRE------K--NLQSWTIMISGLA 279 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~ 279 (462)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876653 211 1 233455566777888999999998887642 1 1234555667788
Q ss_pred HcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHH
Q 012504 280 DNGRGNYAISLFAKMIQTG--LKPDSI--SF--SAILSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLG 350 (462)
Q Consensus 280 ~~~~~~~a~~~~~~m~~~~--~~p~~~--~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 350 (462)
..|++++|...+.+..... ...... .. ...+..+...|+.+.|..++...... ..... ...+..+..++.
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHH
Confidence 9999999999998875421 111111 10 11123345578899999987776431 11111 112346677888
Q ss_pred hcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 351 RAGLIEEAYHIIRNMPT-------EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 351 ~~~~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
..|++++|...+++... .. ...+...+..++...|+. +.|...+.++.+.....
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~-~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK-SEAQRVLLEALKLANRT 764 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhCcc
Confidence 99999999999988632 11 123555667788999999 99999999999875443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-05 Score=74.39 Aligned_cols=215 Identities=13% Similarity=0.130 Sum_probs=174.1
Q ss_pred CCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 012504 133 DSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSAC 212 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 212 (462)
+|-...-..+...+.+.|-...|..+|+++. .|...+.+|...|+..+|..+..+..+ -+||+..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 3444455677888999999999999999875 788889999999999999999888777 378999998888887
Q ss_pred hcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC---hhhHHHHHHHHHHcCChHHHHH
Q 012504 213 TSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN---LQSWTIMISGLADNGRGNYAIS 289 (462)
Q Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 289 (462)
....-+++|.++.+..-.. ....+.....+.++++++.+.|+.-.+-+ ..+|-.+..+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7766677777777665433 22333344455789999999998766543 4688888888899999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 290 LFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 290 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
.|..-... .|+ ...|+.+-.+|.+.++-.+|...+.+..+. + .-+...|...+....+.|.+++|.+.+.++
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99988764 566 458999999999999999999999999875 4 556778888888999999999999999887
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.4e-06 Score=77.33 Aligned_cols=167 Identities=13% Similarity=0.138 Sum_probs=78.1
Q ss_pred HHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHH
Q 012504 209 VSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (462)
+.+......|.+|..+++.+.... .....|..+.+-|...|+++.|.++|-+.- .++-.|..|.+.|++++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHH
Confidence 344445555666666666555543 223344455556666666666666665422 2333455566666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE 368 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 368 (462)
++-.+.. |.......|..-..-.-..|++.+|+++|-.+. .|+ .-|.+|-+.|..++.+++.++-...
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----Cch-----HHHHHHHhhCcchHHHHHHHHhChh
Confidence 5544332 222223334333334445555555555543331 122 1234455555555555555443222
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 369 PNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
.-..|...+..-+-..|+. +.|+..|
T Consensus 880 ~l~dt~~~f~~e~e~~g~l-kaae~~f 905 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDL-KAAEEHF 905 (1636)
T ss_pred hhhHHHHHHHHHHHhccCh-hHHHHHH
Confidence 2223333344444444444 4444433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-06 Score=67.68 Aligned_cols=110 Identities=9% Similarity=-0.064 Sum_probs=89.2
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 323 KNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+.++++..+ +.|+ .+..+...+...|++++|...|+.... +.+...|..+..++...|++ +.|...|+++.+
T Consensus 13 ~~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY-TTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH-HHHHHHHHHHHh
Confidence 345555553 3454 355667788899999999999988643 45778888889999999999 999999999999
Q ss_pred cCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 401 LEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 401 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+|+++..+..++.++...|++++|+..|+...+..+.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999988876654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-05 Score=70.20 Aligned_cols=126 Identities=10% Similarity=0.060 Sum_probs=58.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH-HHHHHHHHHHhccc-chHhHHHHHHHHHHhCCCchHhHHHHHHHH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKLANESPNS-VTLVSLVSACTSLI-NVRAGESIHSYAVVNGLELDVALGTALVEM 246 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (462)
++..+-..+...+..++|+.++.++.+. .|+. ..|+.-..++...| +++++...++.+.+.. +.+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444444555556666666666666653 3333 23333333333444 3455555555555544 3344444444333
Q ss_pred HHhcCCh--HHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 247 YSKCGHV--EKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 247 ~~~~~~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
+.+.|+. +++..+++++.+ .|..+|+...-++...|+++++++.++++++.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333331 333444444332 23334444444444444444444444444444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00031 Score=68.78 Aligned_cols=279 Identities=9% Similarity=0.033 Sum_probs=179.7
Q ss_pred HHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhH
Q 012504 75 AYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDV 154 (462)
Q Consensus 75 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (462)
....++-+++|..+|+..- .+......++. ..+.+++|.++-+.. ..+..|..+..+-...|.+.+
T Consensus 1057 iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~d 1122 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKD 1122 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHH
Confidence 3444555666666666532 23333334443 235566665554432 245678899999999999999
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC
Q 012504 155 AKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE 234 (462)
Q Consensus 155 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (462)
|++-|-+. .|+..|..++....+.|.|++-.+++...++..-.|...+ .++-+|++.+++.+.+.++ .-
T Consensus 1123 AieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~g 1191 (1666)
T KOG0985|consen 1123 AIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AG 1191 (1666)
T ss_pred HHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cC
Confidence 98887554 4667888999999999999999999888877766665554 5778888888877655543 13
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccC------------------------CChhhHHHHHHHHHHcCChHHHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMRE------------------------KNLQSWTIMISGLADNGRGNYAISL 290 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (462)
|+......+.+-|...|.++.|.-+|..... .+..+|...-.+|...+.+.-|
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA--- 1268 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA--- 1268 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH---
Confidence 4555555555555555555555555444331 2456777777777766655433
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 012504 291 FAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNM---- 365 (462)
Q Consensus 291 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 365 (462)
+|...++.....-...++..|...|-+++.+.+++... |+.. ..-.|+.|.-.|.+- ++++..+.++-.
T Consensus 1269 --QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L---GLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRv 1342 (1666)
T KOG0985|consen 1269 --QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL---GLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRV 1342 (1666)
T ss_pred --HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh---chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhc
Confidence 33334445556677889999999999999999988776 5443 355677777777664 455555544332
Q ss_pred CCC------CCHHHHHHHHHHHHHcCCh
Q 012504 366 PTE------PNAVILRSFLGACRNHGQV 387 (462)
Q Consensus 366 ~~~------~~~~~~~~l~~~~~~~~~~ 387 (462)
..+ .....|..+.-.|.+-..+
T Consensus 1343 NipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1343 NIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 211 2345677777777776666
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.7e-06 Score=76.17 Aligned_cols=188 Identities=11% Similarity=0.020 Sum_probs=119.6
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012504 233 LELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA 312 (462)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 312 (462)
++|-......+...+.+.|-...|..+|+++ ..|...|.+|+..|+..+|..+..+..++ +|++..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 4555566677888889999999999999874 45667788889999999999888887773 6788888888877
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChHHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP-T-EPNAVILRSFLGACRNHGQVLYL 390 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~ 390 (462)
.....-++.|.++.+..... .-..+.....+.++++++.+.|+.-. . +....+|..+..+..+.++. +.
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~-q~ 537 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE-QA 537 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh-HH
Confidence 66666667777766655332 11111112223455555555555431 1 22345555555555555555 55
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 391 DDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 391 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
+...|.....+.|++...|+.+..+|.+.|+..+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 5556655556666665566666666666666666666655555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.2e-08 Score=54.58 Aligned_cols=32 Identities=34% Similarity=0.489 Sum_probs=22.0
Q ss_pred CCCCccchHhHHHHHHHhcCChhHHHHHHhcC
Q 012504 131 GLDSDKYIGNTLLRMYAACKEIDVAKAVFEEM 162 (462)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 162 (462)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666677777777777777777777776665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9e-06 Score=67.11 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR 351 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (462)
..+-..+...|+-+....+....... ..-|.......+......|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33445555555555555555543332 112333344455555666666666666666654 445556666666666666
Q ss_pred cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 352 AGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 352 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
.|+++.|..-|.+..+ ..++...+.+...+.-.|+. +.|..++.......+.++.+-..|+.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~-~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL-EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH-HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666666655422 23445556666666666666 66666666666666666666666666666666666666554
Q ss_pred H
Q 012504 430 V 430 (462)
Q Consensus 430 ~ 430 (462)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-05 Score=74.50 Aligned_cols=233 Identities=12% Similarity=0.036 Sum_probs=116.6
Q ss_pred CcchHHHHHHH--hhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC------------C
Q 012504 100 DNFTYPFVVKA--CGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV------------R 165 (462)
Q Consensus 100 ~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~ 165 (462)
|..|-..++.. |...|+.+.|.+-++.+. +..+|..+.++|.+..++|-|.-.+-.|.. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 44444444433 455566666655554433 234566666666666666666655555541 0
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
+...-....-.....|.+++|..+|.+-+. |..|=..|-..|.|++|.++-+.--...+ -.+|.....
T Consensus 799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred CcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 111111222223345556666666655544 22233344455666665555432221111 123333334
Q ss_pred HHHhcCChHHHHHHHhhccCCC-----------------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012504 246 MYSKCGHVEKAFKVFNLMREKN-----------------------LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD 302 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 302 (462)
-+...++.+.|++.|++...+- ...|.--.+-+-..|+.+.|+.++...++
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 4444455566665555443221 11222223333345566666666555443
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
|-.+++..+-+|+.++|-++-++- -|......|.+.|...|++.+|..+|.+..
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334455556667777666655443 234455567777888888888888877653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-07 Score=53.00 Aligned_cols=32 Identities=25% Similarity=0.582 Sum_probs=22.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 334 NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.3e-06 Score=80.27 Aligned_cols=159 Identities=10% Similarity=0.095 Sum_probs=114.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 012504 267 NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS-ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCM 345 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 345 (462)
++..+..|.....+.|++++|..+++...+. .|+. .....+...+.+.+++++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 4677788888888888888888888888875 5554 4666777788888888888888888875 333446677777
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHH
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 423 (462)
..++.+.|++++|..+|+++.. .|+ ..++..+..++...|+. ++|...|+++.+...+-...|..++ ++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~-~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL-WRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 8888888888888888888753 333 67788888888888888 8888888888876554444444332 2344
Q ss_pred HHHHHHHHHhcCC
Q 012504 424 TAAELMVAINQKG 436 (462)
Q Consensus 424 ~A~~~~~~~~~~~ 436 (462)
.-...++.+.-.+
T Consensus 234 ~~~~~~~~~~~~~ 246 (694)
T PRK15179 234 ADLAALRRLGVEG 246 (694)
T ss_pred HHHHHHHHcCccc
Confidence 4455555554333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-05 Score=66.75 Aligned_cols=128 Identities=15% Similarity=0.057 Sum_probs=111.1
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc
Q 012504 307 SAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP--TEPNAVILRSFLGACRNH 384 (462)
Q Consensus 307 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 384 (462)
..+-..+...|+-+....+...... ..+.+......++....+.|++..|...+++.. .++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 5556677778888888888877654 445556677779999999999999999999984 368999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 385 GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 385 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
|+. +.|...+.++.++.|+++.+...++..|.-.|+++.|..++......+.
T Consensus 148 Gr~-~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 148 GRF-DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred cCh-hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999 9999999999999999999999999999999999999999998776544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00016 Score=64.37 Aligned_cols=214 Identities=9% Similarity=0.001 Sum_probs=123.8
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC-ChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCCh--HHHH
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCG-HVEKAFKVFNLMREK---NLQSWTIMISGLADNGRG--NYAI 288 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~ 288 (462)
.+..++|.....++++.. +-+..+|+.-..++...| ++++++..++++.+. +..+|+.....+.+.|+. +++.
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 345566666666666654 444555655555555556 467777777766542 334555554444455542 5566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc---CCH----HHHHHH
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA---GLI----EEAYHI 361 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~A~~~ 361 (462)
.+++++.+...+ |..+|.....++...|+++++++.++++.+. + +.|...|+.....+.+. |.. ++.+++
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 777777665322 4556666666666677777777777777753 2 33455555554444433 222 345555
Q ss_pred HHhC-CC-CCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC---------------
Q 012504 362 IRNM-PT-EPNAVILRSFLGACRNH----GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG--------------- 420 (462)
Q Consensus 362 ~~~~-~~-~~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------------- 420 (462)
...+ .. +.+...|+.+...+... ++. ..+...+.++.+.+|.++.+...|+..|....
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~-~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSD-PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccc-hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 5333 22 23455666555555552 334 45666777776777777777777777776532
Q ss_pred ---CHHHHHHHHHHHh
Q 012504 421 ---NWDTAAELMVAIN 433 (462)
Q Consensus 421 ---~~~~A~~~~~~~~ 433 (462)
..++|..+++.+.
T Consensus 285 ~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 285 ELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccHHHHHHHHHHHH
Confidence 2366777777773
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.6e-05 Score=76.40 Aligned_cols=236 Identities=10% Similarity=0.016 Sum_probs=122.4
Q ss_pred cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcC
Q 012504 101 NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVAC 180 (462)
Q Consensus 101 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 180 (462)
...+..|+..+...+++++|.++.+...+..+ -....|-.+...+...++.+.+..+ .++......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 34556666666666777777776665554421 1222233333344555554333222 233333444
Q ss_pred CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHH
Q 012504 181 DSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVF 260 (462)
Q Consensus 181 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 260 (462)
.++.-+..++..|... .-+...+..+..+|.+.|+.+++..+|+++++.. +.++.+.|.+...|... ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4454444444444442 2344466666677777777777777777777666 55666667676666666 667776666
Q ss_pred hhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchh
Q 012504 261 NLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTME 340 (462)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 340 (462)
.+. +..+...+++.++.++|.++.... |+. .+.-.++.+.+...-+..--..
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~--~~d---------------~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVHYN--SDD---------------FDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHhcC--ccc---------------chHHHHHHHHHHhhhccchhHH
Confidence 553 223555566666666666666541 221 1111122222222112222233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
++..+...|...++|+++..+++.+.. +.+......++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 444455566666667777777766633 234444455555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-05 Score=64.50 Aligned_cols=154 Identities=10% Similarity=0.059 Sum_probs=112.5
Q ss_pred HHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGK 323 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 323 (462)
+-.|...|+++.+....+.+..+. ..+...++.+++...+++....+ +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455777788777655544332221 01123566777887888777763 346778888889999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHH-HhcCC--HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 324 NYFDEMARVYNIKPTMEHYGCMVDML-GRAGL--IEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLL 398 (462)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 398 (462)
..|++..+. .+.+...+..+..++ ...|+ .++|.+++++... +.+...+..+...+...|++ ++|...++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~-~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADY-AQAIELWQKV 170 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 999998863 234577788888764 67777 5899999988743 34677888888899999999 9999999999
Q ss_pred HhcCCCCCchH
Q 012504 399 LKLEPELGANY 409 (462)
Q Consensus 399 ~~~~p~~~~~~ 409 (462)
.+..|++..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99888776443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-05 Score=68.61 Aligned_cols=65 Identities=9% Similarity=-0.010 Sum_probs=41.1
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC-H---HHHHHHHHHHhcccchHhHHHHHHHHHHhC
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN-S---VTLVSLVSACTSLINVRAGESIHSYAVVNG 232 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 232 (462)
....+..+...+...|++++|...|+++.... |+ . ..+..+..++...|++++|...++.+.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 45566666667777777777777777766542 32 1 344555666666677777777777666553
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.7e-05 Score=76.98 Aligned_cols=375 Identities=10% Similarity=-0.023 Sum_probs=203.9
Q ss_pred CHHHHHHHhccCCC-CCC-cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHH
Q 012504 49 SLHFTRSLFNNLPV-TPP-LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSL 126 (462)
Q Consensus 49 ~~~~A~~~~~~~~~-~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 126 (462)
+...|...|-+.-. .|+ ...|..|...|...-+...|.+.|+...+-+.. |..........|++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55555555533222 122 335777888887777788888888888765432 566677777888888888888877322
Q ss_pred HHHhCC-CCccchHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH
Q 012504 127 IFKVGL-DSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 127 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 202 (462)
.-+... ..-...|..+.-.|.+.++...|+.-|+.... .|...|..+..+|...|++..|+++|.+... +.|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh
Confidence 222110 00111222233346677888888888877653 3677888899999999999999999988776 45554
Q ss_pred HHHHH--HHHHHhcccchHhHHHHHHHHHHhC------CCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---------
Q 012504 203 VTLVS--LVSACTSLINVRAGESIHSYAVVNG------LELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--------- 265 (462)
Q Consensus 203 ~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------- 265 (462)
. |.. ..-.-+..|.+.++...+..+.... ...-..++-.+...+...|-..+|..++++-.+
T Consensus 630 ~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 K-YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred H-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 3 222 1222346688888888777766532 011112222222222223333333333332221
Q ss_pred --CChhhHHHHHHHHHHcCChH------HHHHHH-HHHHHCCCC--------------------CCHHHHHHHHHHhhc-
Q 012504 266 --KNLQSWTIMISGLADNGRGN------YAISLF-AKMIQTGLK--------------------PDSISFSAILSACSH- 315 (462)
Q Consensus 266 --~~~~~~~~l~~~~~~~~~~~------~a~~~~-~~m~~~~~~--------------------p~~~~~~~ll~~~~~- 315 (462)
.+...|-.+..+|.---+.+ ....++ .+....+.. .+..+|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 12222222222211100000 000011 111111111 122233333332222
Q ss_pred -------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCC
Q 012504 316 -------LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP--TEPNAVILRSFLGACRNHGQ 386 (462)
Q Consensus 316 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 386 (462)
..+...|...++...+. -..+..+|+.|.-. ...|++.-|...|-.-. .+....+|..+...+....+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 12233555666555542 12234445544433 45566666666654432 23456677777777777888
Q ss_pred hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 387 VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 387 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
+ +-|...|.+++.+.|.+...|...+.+-...|+.-++..++.-
T Consensus 866 ~-E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 866 F-EHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred H-HHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8 8888888888888888887787777777778887777777764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00011 Score=71.80 Aligned_cols=409 Identities=11% Similarity=-0.005 Sum_probs=235.0
Q ss_pred HHHHHHHHHHhCCCCchhhhhhHh--hhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHHHHHH
Q 012504 19 LHQLHTLFLKTSLDHNTCIISRFI--LTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFDEMLK 94 (462)
Q Consensus 19 a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 94 (462)
+..++..+....+.++....=+.+ +++-+.+...|.+.|++.-+- .+..++......|++..+++.|..+.-..-+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 333344444444555544333333 233333788888888765432 6778899999999999999999998433322
Q ss_pred CCCC-CCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChh-hHHH
Q 012504 95 TGLR-PDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVV-SWSS 172 (462)
Q Consensus 95 ~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 172 (462)
.... .-...|..+--.+-..++...+..-|+...+..+ -|...|..+..+|.++|++..|.++|.+...-++. .|..
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 2100 0111222222235677888899998988887753 37788999999999999999999999887754332 2222
Q ss_pred H--HHHHHcCCChhHHHHHHHHhHHC------CCCCCHHHHHHHHHHHhcccc-------hHhHHHHHHHHHHhCCCchH
Q 012504 173 M--IAGFVACDSPSDALKVFHRMKLA------NESPNSVTLVSLVSACTSLIN-------VRAGESIHSYAVVNGLELDV 237 (462)
Q Consensus 173 l--~~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 237 (462)
. .-.-+..|.+.+++..+...... +...-..++..+...+...|= ++.+.+.+.-...+....+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 2 22334578899999888876542 111112223222222222222 22333333333322222222
Q ss_pred hHHHHHHHHHH-----------------------hcCCh---H---HHHHHHhhcc--CCChhhHHHHHHHHHH----c-
Q 012504 238 ALGTALVEMYS-----------------------KCGHV---E---KAFKVFNLMR--EKNLQSWTIMISGLAD----N- 281 (462)
Q Consensus 238 ~~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~--~~~~~~~~~l~~~~~~----~- 281 (462)
..|-.+.+++. ..+.. + -+.+.+-.-. ..+..+|..++..|.+ .
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcC
Confidence 22222222111 11111 1 0001110000 0134456666655544 1
Q ss_pred ---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHH
Q 012504 282 ---GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 282 ---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 358 (462)
.+...|+..+++.++.. ..+..+++.|.- ....|++.-+...|-+-.. ..+....+|..+.-.+.+..+++-|
T Consensus 794 et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHh
Confidence 23346778888777642 234556666554 4556777777777665543 3455678898898889999999999
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--C---CCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 359 YHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL--E---PELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 359 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
...|..... +.+...|-.........|+. -++..+|..-... . -.....+..........|+.++-+..-++
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~i-i~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRI-IERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHH-HHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 999998864 33556675555556678888 7788888874433 2 22233455556666778888877776666
Q ss_pred Hh
Q 012504 432 IN 433 (462)
Q Consensus 432 ~~ 433 (462)
+.
T Consensus 949 i~ 950 (1238)
T KOG1127|consen 949 IS 950 (1238)
T ss_pred hh
Confidence 54
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-06 Score=66.58 Aligned_cols=94 Identities=15% Similarity=0.082 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
...+...+...|++++|.+.++.+.. +.+...+..+...+...|++ +.|...++.+.+..|+++..+..++.+|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY-EEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 33444445555555555555544421 22344444455555555555 5555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHhcCC
Q 012504 420 GNWDTAAELMVAINQKG 436 (462)
Q Consensus 420 g~~~~A~~~~~~~~~~~ 436 (462)
|++++|.+.|+...+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 99 GEPESALKALDLAIEIC 115 (135)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 55555555555554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.3e-05 Score=62.73 Aligned_cols=243 Identities=9% Similarity=0.048 Sum_probs=159.0
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHH
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEK 255 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (462)
-+.-.|++..++..-...... +.+...-.-+-++|...|....... ++.... .|.......+......-++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 344457777777665554432 1344444445667766666544322 222222 3444444444444444444444
Q ss_pred HH-HHHhhccCC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 012504 256 AF-KVFNLMREK----NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMA 330 (462)
Q Consensus 256 a~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 330 (462)
-. ++.+.+..+ +......-...|+..|++++|++...... ..+... .=+..+.+..+.+-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAA--LNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333333332 22333344567899999999999887621 222222 23344668889999999999997
Q ss_pred HhcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 331 RVYNIKPTMEHYGCMVDMLGR----AGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
+- .+..+.+.|..++.+ .+...+|.-+|+++.. .|++.+.+....++...|++ ++|+.+++.++...+.
T Consensus 165 ~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~-eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 165 QI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY-EEAESLLEEALDKDAK 239 (299)
T ss_pred cc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH-HHHHHHHHHHHhccCC
Confidence 52 345567777777654 4568999999999965 58999999999999999999 9999999999999999
Q ss_pred CCchHHHHHHHHhhcCCHHHHH-HHHHHHhcC
Q 012504 405 LGANYVLAASVSSLSGNWDTAA-ELMVAINQK 435 (462)
Q Consensus 405 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 435 (462)
++.+...++-+-...|.-.++. +.+..++..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999998888777888765544 455555543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.3e-05 Score=75.39 Aligned_cols=230 Identities=13% Similarity=0.146 Sum_probs=150.5
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHC-CCCCCH---HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLA-NESPNS---VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGT 241 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (462)
+...|-..|......++.++|.++.++.... ++.-.. ..|.++++.-..-|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3445666666677777777777777776543 211111 234444444444456666777777777652 3345677
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccC
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSISFSAILSACSHLG 317 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 317 (462)
.|...|.+.+.+++|.++++.|.+. ....|...+..+.++++-+.|..++.++.+.-.+- ........+..-.+.|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 7888888888888888888888753 45678888888888888888888888877652211 1223444445556778
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C--C--CHHHHHHHHHHHHHcCChHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-E--P--NAVILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--~--~~~~~~~l~~~~~~~~~~~~~a~ 392 (462)
+.+++..+|+..... .+--...|+.+++.-.+.|+.+.++.+|+++.. . | --..|...+.---++|+- ..++
T Consensus 1615 DaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde-~~vE 1691 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE-KNVE 1691 (1710)
T ss_pred CchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch-hhHH
Confidence 888888888888863 344567888888888888888888888888743 1 1 123444445444566776 6666
Q ss_pred HHHHHHHh
Q 012504 393 NLGKLLLK 400 (462)
Q Consensus 393 ~~~~~~~~ 400 (462)
.+-.++.+
T Consensus 1692 ~VKarA~E 1699 (1710)
T KOG1070|consen 1692 YVKARAKE 1699 (1710)
T ss_pred HHHHHHHH
Confidence 66555543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00015 Score=72.12 Aligned_cols=236 Identities=9% Similarity=0.090 Sum_probs=133.6
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchH-HHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHH
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTY-PFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTL 142 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (462)
.+...|..|+..+...+++++|.++.+...+. .|+...+ -.+...+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 55666777888887788888888888766654 3443332 2222234445554444333 12
Q ss_pred HHHHHhcCChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHh
Q 012504 143 LRMYAACKEIDVAKAVFEEMPV--RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRA 220 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 220 (462)
++......++.-...+...+.. .+..++..+..+|-+.|+.+++..+|+++.+.. +-|....+.+...++.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2222222233222222222221 133466677777888888888888888887765 44667777777777777 7777
Q ss_pred HHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CC
Q 012504 221 GESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQT-GL 299 (462)
Q Consensus 221 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~ 299 (462)
|.+++.+.+.. |...+++..+.+++.++..-++.-+.. -..+.+.+... |.
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~-------------f~~i~~ki~~~~~~ 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDF-------------FLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchH-------------HHHHHHHHHhhhcc
Confidence 77777766654 455667777777777776544432222 22222222222 11
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 012504 300 KPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350 (462)
Q Consensus 300 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (462)
.--..++-.+-..|...++++++..+++.+.+. -+-|.....-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 122334445556667777788888888887752 2223444555555553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00018 Score=64.98 Aligned_cols=205 Identities=9% Similarity=0.042 Sum_probs=90.1
Q ss_pred HHHHhhc-ChhHHHHHHHHHH---HhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCC-----CCcccHHHHHHHHHh
Q 012504 8 TLIQLSK-TVHHLHQLHTLFL---KTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVT-----PPLFAYNTLIRAYAK 78 (462)
Q Consensus 8 ~~l~~~~-~~~~a~~~~~~~~---~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~-----~~~~~y~~li~~~~~ 78 (462)
.+|...| ++...-+.|+.+. ..|-.|+....+|=+ . -.++.+++..-+.+|.. |+...+...+.+...
T Consensus 210 ~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPl--p-~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~ 286 (484)
T COG4783 210 TTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPL--P-EERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE 286 (484)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCC--c-hhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc
Confidence 3444544 4444455555555 345555555555555 1 12677777777777643 444445555554443
Q ss_pred CCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHH
Q 012504 79 TSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAV 158 (462)
Q Consensus 79 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 158 (462)
...-..+..++..-.+. .-...-|..-+. ....|+.+.|+..+..++..- +-|...+....+.+.+.++.++|.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~ 362 (484)
T COG4783 287 ALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIER 362 (484)
T ss_pred cccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 33333333322222210 111222222222 224455555555555554442 22333333344444444444444444
Q ss_pred HhcCCC--CC-hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHh
Q 012504 159 FEEMPV--RD-VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRA 220 (462)
Q Consensus 159 ~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 220 (462)
++++.. |+ ...+-.+..++.+.|++.+|+.+++..... .+-|+..|..|..+|...|+..+
T Consensus 363 ~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 363 LKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHH
Confidence 444432 21 223333444444444444444444444333 13344444444444444444333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00015 Score=65.48 Aligned_cols=123 Identities=17% Similarity=0.103 Sum_probs=77.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN-AVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~ 382 (462)
-|..-+. +...|.+++|+..++.+.. ..+-|+..+....+.+.+.|+.++|.+.++++.. .|+ ...+-.+..++.
T Consensus 309 ~YG~A~~-~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQ-TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHH-HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 3444433 3345677777777777665 3344455555666677777777777777776643 344 444555666777
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
+.|++ ++|+..++......|+++..|..|+.+|...|+..+|.....+
T Consensus 386 ~~g~~-~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 386 KGGKP-QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred hcCCh-HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 77777 7777777777777777777777777777666665555544433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0017 Score=59.54 Aligned_cols=364 Identities=14% Similarity=0.067 Sum_probs=193.1
Q ss_pred CCchhhhhhHhhhhhcC--CHHHHHHHhccCCCC-C-CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHH
Q 012504 32 DHNTCIISRFILTSLSI--SLHFTRSLFNNLPVT-P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFV 107 (462)
Q Consensus 32 ~~~~~~~~~ll~~~~~~--~~~~A~~~~~~~~~~-~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 107 (462)
+-|...|+.|| +.++ ..+++++.++++-.. | +...|..-|+.-....+++....+|.+.+..- .+...|..-
T Consensus 17 P~di~sw~~li--re~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLI--REAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHH--HHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45888999999 5555 899999999888544 4 45567777999999999999999999988753 356666666
Q ss_pred HHHhhh-hcCchhHHH----HHHHH-HHhCCCCcc-chHhHHHHH---------HHhcCChhHHHHHHhcCCC-C-----
Q 012504 108 VKACGR-CLLIGIGGS----VHSLI-FKVGLDSDK-YIGNTLLRM---------YAACKEIDVAKAVFEEMPV-R----- 165 (462)
Q Consensus 108 l~~~~~-~~~~~~a~~----~~~~~-~~~~~~~~~-~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~-~----- 165 (462)
++-..+ .++...... .|+-. .+.|+.+-. .+|+..+.. |....+++...++++++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 654333 244444332 23322 234544433 345555543 3344567788888888763 2
Q ss_pred ----ChhhHHHHHHH-------HHcCCChhHHHHHHHHhHH--CCCCCCHH---------------HHHHHHHH------
Q 012504 166 ----DVVSWSSMIAG-------FVACDSPSDALKVFHRMKL--ANESPNSV---------------TLVSLVSA------ 211 (462)
Q Consensus 166 ----~~~~~~~l~~~-------~~~~~~~~~a~~~~~~m~~--~~~~p~~~---------------~~~~l~~~------ 211 (462)
|-..|..=|+. --+...+-.|.++++++.. .|+..+.. .|..+|.-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 11122111111 1122344455555555432 12111100 01111111
Q ss_pred -------------------------------------------Hhcccc-------hHhHHHHHHHHHHhCCCchHhHHH
Q 012504 212 -------------------------------------------CTSLIN-------VRAGESIHSYAVVNGLELDVALGT 241 (462)
Q Consensus 212 -------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 241 (462)
+...|+ .+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 112222222222211111222222
Q ss_pred HHHHHHHhc---CChHHHHHHHhhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHh
Q 012504 242 ALVEMYSKC---GHVEKAFKVFNLMRE----KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSISFSAILSAC 313 (462)
Q Consensus 242 ~l~~~~~~~---~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~ 313 (462)
.+...--.. +..+.....++++.. .-..+|..+++.-.+......|..+|.++.+.+..+ +...+++++..+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 221111000 012223333333321 112356666666666677777777777777766555 555666677655
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCChH
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE-----PNAVILRSFLGACRNHGQVL 388 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 388 (462)
+. ++.+.|.++|+.=.+.+| .++..-...++-+...|+-..+..+|++...+ ....+|..++.--..-|+.
T Consensus 413 cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL- 488 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL- 488 (656)
T ss_pred hc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH-
Confidence 54 666777777776665432 23334445566666677777777777776432 1246777777777777777
Q ss_pred HHHHHHHHHHHhcCC
Q 012504 389 YLDDNLGKLLLKLEP 403 (462)
Q Consensus 389 ~~a~~~~~~~~~~~p 403 (462)
..+..+-++.....|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 666666666554444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.6e-06 Score=63.21 Aligned_cols=97 Identities=8% Similarity=-0.125 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMP--TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
....-.+...+...|++++|..+|+-+. .+.+...|..|.-++...|++ .+|+..+..+..++|+++.++..++.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~-~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW-GEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444556666778999999999998863 245677888889899999999 9999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHhcCC
Q 012504 417 SLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~ 436 (462)
...|+.+.|.+.|+..+...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999877543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0028 Score=61.64 Aligned_cols=410 Identities=12% Similarity=0.052 Sum_probs=190.4
Q ss_pred cChhHHHHHHHHHHHh-CCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCCchhHHHHHH
Q 012504 14 KTVHHLHQLHTLFLKT-SLDHNTCIISRFILTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSCSIESIKLFD 90 (462)
Q Consensus 14 ~~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~a~~~~~ 90 (462)
+++..|.+-...+.++ +=.+-..++.++. -...|..++|..+++..... .|..|...+-.+|...|+.++|..+|+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLs-l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALS-LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHH-HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4555555555554443 2233333333333 12234666666666555332 455566666666666777777777777
Q ss_pred HHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCC----------hhHHHHHHh
Q 012504 91 EMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKE----------IDVAKAVFE 160 (462)
Q Consensus 91 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~ 160 (462)
..... -|+..-...+..+|.+.+++.+-.++--++-+. .+-+...+=.+++.....-. +.-|.+.++
T Consensus 102 ~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 66653 345555556666666666555444433333332 23344444444444433211 122344444
Q ss_pred cCCCCC-----hhhHHHHHHHHHcCCChhHHHHHHHH-hHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC
Q 012504 161 EMPVRD-----VVSWSSMIAGFVACDSPSDALKVFHR-MKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE 234 (462)
Q Consensus 161 ~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (462)
.+.+.+ ..-...-...+-..|++++|+.++.. ..+.-...+...-+.-+..+...++|.+..++-.++...| .
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-~ 257 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-N 257 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC-C
Confidence 443322 00011111223345667777777633 2222222233333445555666677777777777776665 2
Q ss_pred chHhHHHHHHHHHH----------------hcCChHHHHHHHhhccCC-ChhhHHHHHHH---HHHcCChHHHHHHHHHH
Q 012504 235 LDVALGTALVEMYS----------------KCGHVEKAFKVFNLMREK-NLQSWTIMISG---LADNGRGNYAISLFAKM 294 (462)
Q Consensus 235 ~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~m 294 (462)
.| |...++.+. ..+..+...+..++.... .-..|-+-+.+ +-.-|+.+++...|-+-
T Consensus 258 Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k 334 (932)
T KOG2053|consen 258 DD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK 334 (932)
T ss_pred cc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence 22 222222111 112222222222222211 01112222222 22345666554433221
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchh-------HHHHHHHHHHhcCC-----HHHHHHHH
Q 012504 295 IQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTME-------HYGCMVDMLGRAGL-----IEEAYHII 362 (462)
Q Consensus 295 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~A~~~~ 362 (462)
-|-.| .|..=+..|...=..+.-..++...... .++.. -+.+.+..-.-.|. -+.-..++
T Consensus 335 --fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~ 406 (932)
T KOG2053|consen 335 --FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYV 406 (932)
T ss_pred --hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHH
Confidence 12121 1222222222222223333333333211 11111 01111111111121 11111122
Q ss_pred HhC--------C--CC--CC---------HHHHHHHHHHHHHcCChH--HHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 363 RNM--------P--TE--PN---------AVILRSFLGACRNHGQVL--YLDDNLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 363 ~~~--------~--~~--~~---------~~~~~~l~~~~~~~~~~~--~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
.+. . .. |. ..+.+.|+..+.+.++.. -+|+-+++......|.+..+-..++.+|.-.
T Consensus 407 ~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~l 486 (932)
T KOG2053|consen 407 RKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYL 486 (932)
T ss_pred HHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHh
Confidence 111 0 00 11 124556777888877761 4577778888888999998888999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcc
Q 012504 420 GNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 420 g~~~~A~~~~~~~~~~~~~~ 439 (462)
|-+..|.++|+.+.-++|..
T Consensus 487 Ga~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 487 GAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred cCChhHHHHHHhcchHHhhh
Confidence 99999999999887666654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.3e-07 Score=50.25 Aligned_cols=35 Identities=43% Similarity=0.712 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCc
Q 012504 67 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDN 101 (462)
Q Consensus 67 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 101 (462)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.6e-05 Score=70.79 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGL 318 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 318 (462)
....|+..+...++++.|+.+|+++.+.++.....+++.+...++-.+|.+++++..... +-+...+..-...+.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 445667777788999999999999998888888888999999999999999999998763 3355566666677889999
Q ss_pred HHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012504 319 VDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT 367 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 367 (462)
.+.|..+.+++.. ..|+ ..+|..|..+|.+.|+++.|+-.++.++.
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999985 3554 77999999999999999999999999865
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-05 Score=72.25 Aligned_cols=124 Identities=12% Similarity=0.063 Sum_probs=101.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-E-PNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~ 382 (462)
....++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+... . .+...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455666667778899999999998764 354 445577888888888889888887643 2 35666666677789
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+.++. +.|..+.+++.+..|++..+|..|+.+|...|++++|+-.++.+..
T Consensus 246 ~k~~~-~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKY-ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999 9999999999999999999999999999999999999999998863
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-06 Score=49.43 Aligned_cols=34 Identities=41% Similarity=0.732 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCC
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRP 99 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 99 (462)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00049 Score=67.79 Aligned_cols=142 Identities=10% Similarity=0.120 Sum_probs=116.9
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 012504 233 LELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD-SISFSA 308 (462)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ 308 (462)
.+.++..+..|..+..+.|.+++|..+++...+ | +......++..+.+.+++++|...+++..+. .|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688889999999999999999999999875 4 4567888899999999999999999999986 444 556777
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFL 378 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~ 378 (462)
+..++...|++++|..+|+++.. ..+-+..++..+..++...|+.++|...|+.... .|...-|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 77888999999999999999986 3334478899999999999999999999999843 35555555444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0022 Score=58.82 Aligned_cols=138 Identities=8% Similarity=0.078 Sum_probs=89.8
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCC
Q 012504 53 TRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGL 132 (462)
Q Consensus 53 A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 132 (462)
+++..+.-| -|+.+|+.||+-+... .++++.+.++++... .+-....|..-++.-...++++..+.+|.+.+..-+
T Consensus 9 ~~~rie~nP--~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL 84 (656)
T KOG1914|consen 9 PRERIEENP--YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL 84 (656)
T ss_pred HHHHHhcCC--ccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 344445544 4899999999988777 899999999999864 333567788889988899999999999999887754
Q ss_pred CCccchHhHHHHHHH-hcCChhH----HHHHHhcCC------CCChhhHHHHHHH---------HHcCCChhHHHHHHHH
Q 012504 133 DSDKYIGNTLLRMYA-ACKEIDV----AKAVFEEMP------VRDVVSWSSMIAG---------FVACDSPSDALKVFHR 192 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~-~~~~~~~----A~~~~~~~~------~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~ 192 (462)
. ...|..-++--- ..|.... ..+.|+-.. -.+...|+..+.- |....+++.+.++|.+
T Consensus 85 n--lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqr 162 (656)
T KOG1914|consen 85 N--LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQR 162 (656)
T ss_pred h--HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHH
Confidence 4 445554444222 2333333 222222221 2344456655542 3334456677778887
Q ss_pred hHHC
Q 012504 193 MKLA 196 (462)
Q Consensus 193 m~~~ 196 (462)
+...
T Consensus 163 al~t 166 (656)
T KOG1914|consen 163 ALVT 166 (656)
T ss_pred HhcC
Confidence 7753
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.4e-05 Score=59.83 Aligned_cols=113 Identities=11% Similarity=-0.045 Sum_probs=85.2
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 012504 290 LFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT- 367 (462)
Q Consensus 290 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 367 (462)
.+++.... .|+ ......+...+...|++++|...++.+... .+.+...+..+...+.+.|++++|...++....
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455543 333 344556667777888999999999888763 244677888888888889999999988887632
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 368 -EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 368 -~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
+.+...+..+...+...|+. +.|...++++.+..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEP-ESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhccccch
Confidence 34567777788888999999 9999999999999988764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0005 Score=56.68 Aligned_cols=127 Identities=15% Similarity=0.175 Sum_probs=71.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 280 DNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 280 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
..|++++|+++++...+.+ +.|..++..=+...-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 3466666666666666554 22344444433344445555566666666655 45666677777777777777777777
Q ss_pred HHHHhCCC-CC-CHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 360 HIIRNMPT-EP-NAVILRSFLGACRN---HGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 360 ~~~~~~~~-~~-~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
-.++++.- .| ++..+..+...+.- ..+. ..+..++.++.++.|.+...+.
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~-~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL-ELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhChHhHHHHH
Confidence 77766521 23 34444444444332 2334 5667777777777765443333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0001 Score=60.55 Aligned_cols=186 Identities=12% Similarity=0.084 Sum_probs=141.0
Q ss_pred HhcCChHHHHHHHhhccC--------CCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhccC
Q 012504 248 SKCGHVEKAFKVFNLMRE--------KNL-QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAI-LSACSHLG 317 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~ 317 (462)
....+.++..+++..+.. ++. ..|..++-+....|+.+.|...++++.+. + |...-...+ .--+...|
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~ 100 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATG 100 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhh
Confidence 345678888888887763 122 35666777778899999999999999887 3 443322221 22245678
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
.+++|+++++.+..+ -+.|..++-.-+-..-..|+.-+|++-+.+... ..|...|..+...|...|++ +.|.-.+
T Consensus 101 ~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f-~kA~fCl 177 (289)
T KOG3060|consen 101 NYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF-EKAAFCL 177 (289)
T ss_pred chhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH-HHHHHHH
Confidence 999999999999975 244566666666666677887788877766533 36899999999999999999 9999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHhhcC---CHHHHHHHHHHHhcCCCc
Q 012504 396 KLLLKLEPELGANYVLAASVSSLSG---NWDTAAELMVAINQKGLN 438 (462)
Q Consensus 396 ~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~ 438 (462)
+++.=..|-++-.+..++..+.-.| +.+-|.++|.+..+.+..
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 9999999999988889999876554 566788999988877653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=56.38 Aligned_cols=95 Identities=15% Similarity=0.053 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 418 (462)
.+..+...+...|++++|...++++.. +.+...+..+...+...+++ +.|...++.+.+..|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY-EEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 345567777888888888888887643 23446677778888888999 999999999999888888888899999999
Q ss_pred cCCHHHHHHHHHHHhcCC
Q 012504 419 SGNWDTAAELMVAINQKG 436 (462)
Q Consensus 419 ~g~~~~A~~~~~~~~~~~ 436 (462)
.|++++|...++...+.+
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 999999999988876544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.3e-06 Score=47.20 Aligned_cols=33 Identities=36% Similarity=0.798 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPD 302 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 302 (462)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688889999999999999999999988888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00012 Score=57.41 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=55.9
Q ss_pred cCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCChHH
Q 012504 316 LGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE-PNA----VILRSFLGACRNHGQVLY 389 (462)
Q Consensus 316 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~ 389 (462)
.++...+...++.+...++-.+ .......+...+...|++++|...|+.+... |+. .....+...+...|++ +
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~-d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY-D 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH-H
Confidence 4555555555555555321111 1222333445555566666666666555322 222 1223344555566666 6
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 390 LDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
.|...++... ..+-.+..+...+.+|.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666654421 1222333455566666666666666666654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.6e-05 Score=57.51 Aligned_cols=94 Identities=12% Similarity=0.007 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC---CchHHHHH
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT-EPN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL---GANYVLAA 413 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 413 (462)
+..++..+.+.|++++|.+.|+.+.. .|+ ...+..+..++...|++ +.|...++.+....|++ +.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY-ADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34444455555555555555555422 121 23344455555555555 55666666555555443 23455555
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCC
Q 012504 414 SVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.++.+.|++++|.+.++.+.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 55555666666666665555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.5e-05 Score=64.27 Aligned_cols=111 Identities=19% Similarity=0.072 Sum_probs=92.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 336 KPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRN--HGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
+-|...|-.|...|...|+++.|..-|.+... .+++..+..+..++.. .+....++..+++++.+.+|.++.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 55689999999999999999999999988743 4567777777776543 2233378999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCccCCccceE
Q 012504 412 AASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWV 446 (462)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 446 (462)
|+..+...|++.+|...|+.|.+.....+|..+.|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999887777765543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.1e-06 Score=54.44 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC-CHHHHHHHHHHHhcCC
Q 012504 370 NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG-NWDTAAELMVAINQKG 436 (462)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 436 (462)
++.+|..+...+...|++ +.|+..|+++.+.+|+++.++..++.+|...| ++++|++.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~-~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDY-EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 467888899999999999 99999999999999999999999999999999 7999999999887644
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.9e-06 Score=45.73 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKP 301 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 301 (462)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467778888888888888888888888777766
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00041 Score=54.38 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHH
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPD--SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGCMVD 347 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~ 347 (462)
..++..+ ..++...+...++.+......-. ....-.+...+...|++++|...|+.+... ...|+ ......|..
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHH
Confidence 3333333 35666666666666665421110 112222334555666777777777666654 22222 123334556
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 348 MLGRAGLIEEAYHIIRNMPTE-PNAVILRSFLGACRNHGQVLYLDDNLGKLL 398 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 398 (462)
.+...|++++|+..++..... .....+......+...|+. +.|...|+++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~-~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDY-DEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCH-HHHHHHHHHh
Confidence 666667777777776665432 2334444555666677777 7776666654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.5e-06 Score=57.61 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHH
Q 012504 353 GLIEEAYHIIRNMPT-EP---NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 353 ~~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (462)
|+++.|+.+++++.. .| +...+..+..++.+.|++ +.|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y-~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY-EEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH-HHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH-HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445555555555422 11 223333345555555555 555555555 444444444444555666666666666665
Q ss_pred HHH
Q 012504 429 MVA 431 (462)
Q Consensus 429 ~~~ 431 (462)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.1e-05 Score=53.33 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=51.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+...+...|++ +.|...|+.+.+..|+++..+..++.++...|++++|..+|+++.+..+
T Consensus 3 ~a~~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDY-DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHH-HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45678888999 9999999999999999999999999999999999999999998876554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.8e-05 Score=69.91 Aligned_cols=105 Identities=10% Similarity=-0.086 Sum_probs=86.9
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQV 387 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 387 (462)
...+...|+++.|...|+++.+. -+.+...|..+..+|.+.|++++|+..++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44566789999999999999863 334577888899999999999999999998743 34677888889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 012504 388 LYLDDNLGKLLLKLEPELGANYVLAASVSS 417 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 417 (462)
+.|...++++.++.|+++.+...+..+..
T Consensus 87 -~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 87 -QTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999877666655433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00025 Score=53.38 Aligned_cols=103 Identities=11% Similarity=0.026 Sum_probs=62.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN----AVILRSFL 378 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----~~~~~~l~ 378 (462)
++..+...+...|++++|...+..+...+.-.+ ....+..+..++.+.|+++.|.+.|+.+.. .|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344445555666777777777776665321111 133455566677777777777777766532 122 34556666
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
.++...|+. +.|...++++.+..|+++.+
T Consensus 84 ~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 84 MSLQELGDK-EKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHhCCh-HHHHHHHHHHHHHCcCChhH
Confidence 677777777 77777777777777776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.3e-05 Score=43.75 Aligned_cols=31 Identities=39% Similarity=0.686 Sum_probs=26.1
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHHCCC
Q 012504 67 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGL 97 (462)
Q Consensus 67 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 97 (462)
.+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.92 E-value=9e-05 Score=52.83 Aligned_cols=79 Identities=15% Similarity=0.045 Sum_probs=67.7
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHCCC-CCCcchHHHHHHHhhhhc--------CchhHHHHHHHHHHhCCCCccchHh
Q 012504 70 NTLIRAYAKTSCSIESIKLFDEMLKTGL-RPDNFTYPFVVKACGRCL--------LIGIGGSVHSLIFKVGLDSDKYIGN 140 (462)
Q Consensus 70 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (462)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667778999999999999999999 899999999999977642 3556788999999999999999999
Q ss_pred HHHHHHHh
Q 012504 141 TLLRMYAA 148 (462)
Q Consensus 141 ~l~~~~~~ 148 (462)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00044 Score=61.04 Aligned_cols=156 Identities=14% Similarity=0.033 Sum_probs=114.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hhccCcHHHHHHHHHHHHHhcCCCCchhH------------
Q 012504 276 SGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA--CSHLGLVDEGKNYFDEMARVYNIKPTMEH------------ 341 (462)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 341 (462)
.++...|+.++|.+.--..++.. + ...+...+++ +...++.+.+...|++.+ .+.|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 55677889998888776666542 1 1233334433 445678888888888877 44554222
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 342 -YGCMVDMLGRAGLIEEAYHIIRNMPT------EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 342 -~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
+..=..-..+.|++.+|.+.|.+... +|+...|.....+..+.|+. .+|+.--+++.+++|.-...+..-+.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl-~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL-REAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCc-hhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 11222335678999999999988743 35667777777788899999 99999999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 415 VSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
++...++|++|++-+++..+..-.
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999987765433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.014 Score=51.51 Aligned_cols=288 Identities=15% Similarity=0.110 Sum_probs=194.0
Q ss_pred hHhHHHHHHHh--cCChhHHHHHHhcCC---CCChhhHHHHHHH--HHcCCChhHHHHHHHHhHHCCCCCCHHH--HHHH
Q 012504 138 IGNTLLRMYAA--CKEIDVAKAVFEEMP---VRDVVSWSSMIAG--FVACDSPSDALKVFHRMKLANESPNSVT--LVSL 208 (462)
Q Consensus 138 ~~~~l~~~~~~--~~~~~~A~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~l 208 (462)
-|.+|-.+++. .|+-..|.+.-.+-. ..|....-.++.+ -.-.|+++.|.+-|+.|... |.... +..|
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 45666666644 577777777765543 4466655556543 44579999999999999862 43332 2333
Q ss_pred HHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC-----CChh--hHHHHHHHHH--
Q 012504 209 VSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE-----KNLQ--SWTIMISGLA-- 279 (462)
Q Consensus 209 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~-- 279 (462)
.-...+.|+.+.|..+-+..-..- +.-.-.....+...+..|+|+.|+++++.-.. +++. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 344457788888888887776653 33345677889999999999999999987653 3432 2222332211
Q ss_pred -HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 280 -DNGRGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 280 -~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
-..+...|...-.+..+ +.|+.. .-.....++.+.|+..++-.+++.+-+. .|.+..+... .+.+.|+...
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdta~ 312 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDTAL 312 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCcHH
Confidence 12356667766665554 466643 3334457788999999999999999764 5555554333 3456666432
Q ss_pred H----HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh-cCCHHHHHHHHHHH
Q 012504 358 A----YHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL-SGNWDTAAELMVAI 432 (462)
Q Consensus 358 A----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 432 (462)
. .+-+..|+ +.+......+..+....|++ ..|..--+.+.+..|... .|..|+.+-.. .|+-.++.+.+-+.
T Consensus 313 dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~-~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 313 DRLKRAKKLESLK-PNNAESSLAVAEAALDAGEF-SAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHhccch-HHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHH
Confidence 2 12344444 34566777788888999999 999999999999998865 88888887765 49999999999888
Q ss_pred hcCCCcc
Q 012504 433 NQKGLNK 439 (462)
Q Consensus 433 ~~~~~~~ 439 (462)
++..-.|
T Consensus 390 v~APrdP 396 (531)
T COG3898 390 VKAPRDP 396 (531)
T ss_pred hcCCCCC
Confidence 7766554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0048 Score=52.84 Aligned_cols=174 Identities=11% Similarity=0.032 Sum_probs=103.9
Q ss_pred HHHHHHhcCChHHHHHHHhhccCC--Ch-h---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 012504 243 LVEMYSKCGHVEKAFKVFNLMREK--NL-Q---SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH- 315 (462)
Q Consensus 243 l~~~~~~~~~~~~a~~~~~~~~~~--~~-~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 315 (462)
....+...|++++|.+.|+.+... +. . ..-.++.++.+.+++++|...+++..+..+.-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 444456677888888888777642 21 1 2234566777888888888888888775322222233333333221
Q ss_pred -c---------------Cc---HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 012504 316 -L---------------GL---VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRS 376 (462)
Q Consensus 316 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 376 (462)
. .+ ...|...|+.+.+. |=...-..+|...+..+....-..-+ .
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e~-~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYEL-S 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHHH-H
Confidence 0 11 22344455555443 22222334444444443321111111 3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+..-|.+.|.+ ..|..-++.+.+.-|+.+ .....++.+|...|..++|..+...+..
T Consensus 181 ia~~Y~~~~~y-~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAY-VAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCch-HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 45668899999 999999999999888775 4566788899999999999998876543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.016 Score=56.72 Aligned_cols=227 Identities=10% Similarity=0.011 Sum_probs=114.3
Q ss_pred hhhcCchhHHHHHHHHHHhCCCCccchHhHHHHH--HHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHH
Q 012504 112 GRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRM--YAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDA 186 (462)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 186 (462)
...+++.+|.+....+.+.. |+.. |...+.+ +.+.|..++|..+++.... .|..+...+-.+|...++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34567777777777766653 3332 2222332 3566777777777766653 2566677777777777777777
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012504 187 LKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK 266 (462)
Q Consensus 187 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 266 (462)
..+|++..+. .|+..-...+..+|.+.+++.+-.++--++-+. ++.+...+=+++..+.+... .+
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~------------~~ 161 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIF------------SE 161 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhcc------------CC
Confidence 7777776653 456666666666777666665544444444332 23344444444444433211 11
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 012504 267 NLQSWTIMISGLADNGRGNYAISLFAKMIQTG-LKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCM 345 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 345 (462)
+.... .+. ..-|.+.++.+.+.+ .--+..-...-.......|++++|..++..-....-.+-+...-+.-
T Consensus 162 ~~~~~-~i~--------l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~ 232 (932)
T KOG2053|consen 162 NELLD-PIL--------LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKK 232 (932)
T ss_pred ccccc-chh--------HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 11000 000 112344444444432 11111112222223345566777777663322221222233333445
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 012504 346 VDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~ 365 (462)
++.+...++|.+..++..++
T Consensus 233 ~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 233 LDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHhcChHHHHHHHHHH
Confidence 56666666666666655554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0091 Score=53.11 Aligned_cols=335 Identities=11% Similarity=-0.032 Sum_probs=174.3
Q ss_pred HHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChh
Q 012504 74 RAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEID 153 (462)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (462)
..+.+..++..|+..+....+..+. +..-|..-...+...++++++.--.+.-++.... ....+...-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence 3466667778888888888876543 3445555555566666666665544444433211 1123334445555555666
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCC-CCCHHHHHHHH-HHHhcccchHhHHHHHHHHHHh
Q 012504 154 VAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANE-SPNSVTLVSLV-SACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 154 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
+|.+.|+.- ..+ ....++..++....... +|.-.++..+- .++...|+.++|.++-..+.+.
T Consensus 135 ~A~~~~~~~-----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 135 EAEEKLKSK-----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred HHHHHhhhh-----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc
Confidence 666555511 111 11222222222222111 12223333332 3344566777776666655554
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh---------------hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 232 GLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ---------------SWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
. ..+......=..++.-.++.+.+...|++...-++. .|..-..-..+.|++..|.+.+.+.+.
T Consensus 199 d-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 199 D-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred c-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 3 222222222223344456677777777776643332 122223345567888888888888775
Q ss_pred C---CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC--
Q 012504 297 T---GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-- 369 (462)
Q Consensus 297 ~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-- 369 (462)
. ++.|+...|.....+..+.|+.++|+.--+... .+.|. ...|..-..++...++|++|.+-|+.... ..
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3 345566667666667778888888887777665 33333 33444445566667788888877776522 11
Q ss_pred -CHHHHHHHHHHHHHcCC--h-----------HHHHHH-HHHHHHhcCCCCC--------chHHHHHHHHhhcCCHHHHH
Q 012504 370 -NAVILRSFLGACRNHGQ--V-----------LYLDDN-LGKLLLKLEPELG--------ANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 370 -~~~~~~~l~~~~~~~~~--~-----------~~~a~~-~~~~~~~~~p~~~--------~~~~~l~~~~~~~g~~~~A~ 426 (462)
...++.....++-+..+ + +++-.. +-..++...|+-. .-+..++.+|...++..+..
T Consensus 355 e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~ 434 (486)
T KOG0550|consen 355 EIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRV 434 (486)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHh
Confidence 12233222222221111 1 011111 2222333445432 23567888888888888887
Q ss_pred HHHH
Q 012504 427 ELMV 430 (462)
Q Consensus 427 ~~~~ 430 (462)
+...
T Consensus 435 r~ds 438 (486)
T KOG0550|consen 435 RFDS 438 (486)
T ss_pred hccc
Confidence 7653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00081 Score=59.10 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA-CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
.+|..+++...+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998543 2233344333333 33357778899999999984 4566778888999
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 348 MLGRAGLIEEAYHIIRNMPTE-PN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
.+.+.|+.+.|..+|++.... +. ...|...+.--.+.|+. +....+.+++.+..|++.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl-~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL-ESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H-HHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhhhh
Confidence 999999999999999997543 33 35899999988999999 999999999998887754
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0037 Score=55.23 Aligned_cols=191 Identities=12% Similarity=0.108 Sum_probs=102.1
Q ss_pred HHHHHcCCChhHHHHHHHHhHH----CCCCCC-HHHHHHHHHHHhcccchHhHHHHHHHHHHh----CCCch--HhHHHH
Q 012504 174 IAGFVACDSPSDALKVFHRMKL----ANESPN-SVTLVSLVSACTSLINVRAGESIHSYAVVN----GLELD--VALGTA 242 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ 242 (462)
...|...|++++|.+.|.+... .+-+.+ ...|.....++.+ .+++.|...+++.... | .++ ...+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 4445555555555555554421 111000 1123333333322 3566666555554432 2 222 235555
Q ss_pred HHHHHHhc-CChHHHHHHHhhccC----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HH
Q 012504 243 LVEMYSKC-GHVEKAFKVFNLMRE----KN-----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLK-----PDSI-SF 306 (462)
Q Consensus 243 l~~~~~~~-~~~~~a~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~ 306 (462)
+...|... |++++|++.|++..+ .+ ..++..+...+.+.|++++|.++|++....... .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 66677777 788888888777652 11 235666777888888888888888887764322 1221 22
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHhc-CCCCc--hhHHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 012504 307 SAILSACSHLGLVDEGKNYFDEMARVY-NIKPT--MEHYGCMVDMLGR--AGLIEEAYHIIRNMP 366 (462)
Q Consensus 307 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~--~~~~~~A~~~~~~~~ 366 (462)
...+-++...|+...|.+.+++..... ++..+ ......|+.++-. ...+.++..-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 233335556688888888888876431 22223 3455666777653 345777777787776
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00038 Score=56.40 Aligned_cols=96 Identities=17% Similarity=0.027 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 340 EHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
..+..+...+...|++++|...|++... .++ ...+..+...+...|++ +.|...++++.+..|.++..+..++.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH-DKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3445555555566666666666655421 111 34555666666667777 77777777777766666666666666
Q ss_pred HHhhcCC--------------HHHHHHHHHHHhcCC
Q 012504 415 VSSLSGN--------------WDTAAELMVAINQKG 436 (462)
Q Consensus 415 ~~~~~g~--------------~~~A~~~~~~~~~~~ 436 (462)
++...|+ +++|.+++++..+.+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 6666555 455666666655544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.1e-05 Score=50.41 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=53.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
-..|.+.+++ +.|..+++.+.+.+|+++..+...+.++...|++++|.+.++...+.++.
T Consensus 2 ~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDY-EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCH-HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3567888999 99999999999999999999999999999999999999999998877664
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.3e-05 Score=42.03 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTG 298 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 298 (462)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.024 Score=50.51 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD 320 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (462)
+..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++..++... +-++..|-.++.+|.+.|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33345556677788888888877778888888888888888888777665432 113466777788888888888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
+|..+...+. +..-+..|.+.|++.+|.+.--+..
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 8777766631 2445667778888887776655544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.5e-05 Score=51.38 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=46.5
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
...|++ +.|...++++.+..|++..++..++.+|.+.|++++|.++++.+......
T Consensus 2 l~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDY-DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467888 88999999999999998888889999999999999999998887766544
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.028 Score=50.83 Aligned_cols=416 Identities=12% Similarity=0.089 Sum_probs=224.5
Q ss_pred HHHhhcChhHHHHHHHHHHHhCCCCch-----hhhhhHhhhhhc--CCHHHHHHHhccCCCCCCcccHHHHHHH--HHhC
Q 012504 9 LIQLSKTVHHLHQLHTLFLKTSLDHNT-----CIISRFILTSLS--ISLHFTRSLFNNLPVTPPLFAYNTLIRA--YAKT 79 (462)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~g~~~~~-----~~~~~ll~~~~~--~~~~~A~~~~~~~~~~~~~~~y~~li~~--~~~~ 79 (462)
.|...++..++..+|..+.+.--.... ...+.+| +.| .+++.-...+......-....|-.+..+ +-+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~gril--nAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRIL--NAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHH--HHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 355667889999999998876433211 2223333 222 1555555555444332123445555443 3467
Q ss_pred CCchhHHHHHHHHHHC--CCCC------------CcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCC----CccchHhH
Q 012504 80 SCSIESIKLFDEMLKT--GLRP------------DNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLD----SDKYIGNT 141 (462)
Q Consensus 80 g~~~~a~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 141 (462)
+.+.+|++.+..-..+ +.+| |...=+..+.++...|++.+++.+++.+...-.+ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899999988877665 3332 1122244566788899999999999888765433 67778887
Q ss_pred HHHHHHhc--------CChhHHHHHHh-------cCCCCCh----------hhHHHHHHHHHcC--CChhHHHHHHHHhH
Q 012504 142 LLRMYAAC--------KEIDVAKAVFE-------EMPVRDV----------VSWSSMIAGFVAC--DSPSDALKVFHRMK 194 (462)
Q Consensus 142 l~~~~~~~--------~~~~~A~~~~~-------~~~~~~~----------~~~~~l~~~~~~~--~~~~~a~~~~~~m~ 194 (462)
++-.+.++ ...+-+...++ ++...+. .....++....-. .+..--.++++...
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 66555543 11111112221 1111111 1111122211111 12222233333333
Q ss_pred HCCCCCCHH-HHHHHHHHHhcccchHhHHHHHHHHHHhCCCc----hHhHHHHHHHHHHhcCChHHHHHHHhhcc--CCC
Q 012504 195 LANESPNSV-TLVSLVSACTSLINVRAGESIHSYAVVNGLEL----DVALGTALVEMYSKCGHVEKAFKVFNLMR--EKN 267 (462)
Q Consensus 195 ~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~ 267 (462)
..-+.|+.. ....+...+.+ +.+++..+-+.+....+.+ -..++..++....+.++...|.+.+.-+. +|+
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 333445443 22233333333 4555555555444432211 24467777778888888888887777655 333
Q ss_pred hhh-------HHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHH---hhccCc-HHHHHHHHHHHHH
Q 012504 268 LQS-------WTIMISGLAD----NGRGNYAISLFAKMIQTGLKPDSI-SFSAILSA---CSHLGL-VDEGKNYFDEMAR 331 (462)
Q Consensus 268 ~~~-------~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~---~~~~~~-~~~a~~~~~~~~~ 331 (462)
... -..+-+..+. .-+..+=+.+|+......+ |.. ....++.+ +-+.|. -+.|.++++.+.+
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 221 1112222221 1123334455665555433 322 22333332 344554 7889999998875
Q ss_pred hcCCCCchhHHHHHH----HHHHhc---CCHH---HHHHHHHhCCCC----CCHHHHHHHHHH--HHHcCChHHHHHHHH
Q 012504 332 VYNIKPTMEHYGCMV----DMLGRA---GLIE---EAYHIIRNMPTE----PNAVILRSFLGA--CRNHGQVLYLDDNLG 395 (462)
Q Consensus 332 ~~~~~~~~~~~~~l~----~~~~~~---~~~~---~A~~~~~~~~~~----~~~~~~~~l~~~--~~~~~~~~~~a~~~~ 395 (462)
- -+-|...-+.+. ..|..+ ..+. +-..+.++.... .+...-+.|..+ +...|++ .++.-.-
T Consensus 409 f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey-~kc~~ys 485 (549)
T PF07079_consen 409 F--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY-HKCYLYS 485 (549)
T ss_pred h--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH-HHHHHHH
Confidence 3 122333333222 223221 1122 222333443332 234566666665 5689999 9999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 396 KLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 396 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
..+.+..| ++.+|..++.++....++++|+.++..++-
T Consensus 486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 99999999 788999999999999999999999987654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00037 Score=49.73 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR 351 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (462)
..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|...++..... .+.+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 344445555555555555555555432 112233444444455555555555555554431 12222344444444444
Q ss_pred cCCHHHHHHHHHh
Q 012504 352 AGLIEEAYHIIRN 364 (462)
Q Consensus 352 ~~~~~~A~~~~~~ 364 (462)
.|++++|...+..
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 4555555444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00053 Score=62.54 Aligned_cols=99 Identities=10% Similarity=0.018 Sum_probs=79.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
....+...|++++|+..|++++.... -+...|..+..++...|++++|...++++... -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 35667788999999999999998643 35668888888999999999999999999863 2335778889999999999
Q ss_pred CHHHHHHHHHhCCC-CCCHHHHH
Q 012504 354 LIEEAYHIIRNMPT-EPNAVILR 375 (462)
Q Consensus 354 ~~~~A~~~~~~~~~-~~~~~~~~ 375 (462)
++++|...|++... .|+.....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999998743 35444333
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00059 Score=52.93 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=63.6
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHH
Q 012504 347 DMLGRAGLIEEAYHIIRNMP--TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
.-+...|++++|..+|+-+- ..-+..-|..|..++-..+++ +.|...|..+..+.++||......+.+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y-~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF-QKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33456777777777777652 234566667777777777777 888888888777777888788888888888888888
Q ss_pred HHHHHHHHhc
Q 012504 425 AAELMVAINQ 434 (462)
Q Consensus 425 A~~~~~~~~~ 434 (462)
|+..|+..++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8887777665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0055 Score=57.52 Aligned_cols=94 Identities=14% Similarity=0.063 Sum_probs=56.7
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHH---------HHHHHCCCCCCcchHHHHHHHhhhhcCchhH--HHHHHHHHHhCC
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLF---------DEMLKTGLRPDNFTYPFVVKACGRCLLIGIG--GSVHSLIFKVGL 132 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~---------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~~~ 132 (462)
|....+.+-+-.|...|.+++|.++- +.+... ..+...++..=.+|.+.++..-- ..-++++.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 45556666677788888888876542 111111 12334455555666666665433 333556667776
Q ss_pred CCccchHhHHHHHHHhcCChhHHHHHHhcC
Q 012504 133 DSDKYIGNTLLRMYAACKEIDVAKAVFEEM 162 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 162 (462)
.|+... +...++-.|.+.+|-++|.+-
T Consensus 632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 632 TPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred CchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 677643 556677888888888887553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0087 Score=52.85 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=84.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHH
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL-GLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDM 348 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~ 348 (462)
.+..|...|++..|-+.+ ..+...|... |+++.|.+.|++....+..... ..++..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~---------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCL---------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHH---------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 344555555555554443 3345566676 8888888888887654322222 3456677788
Q ss_pred HHhcCCHHHHHHHHHhCCC----CC----CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc-----hHHHHHH
Q 012504 349 LGRAGLIEEAYHIIRNMPT----EP----NAV-ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA-----NYVLAAS 414 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~----~~----~~~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~ 414 (462)
+.+.|++++|.++|+++.. .+ +.. .+-..+-++...||. ..|...+++.....|.-.. +...|+.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~-v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY-VAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H-HHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 8899999999999987622 11 122 223334466778888 8999999998888765432 3445566
Q ss_pred HHhh--cCCHHHHHHHHHHHh
Q 012504 415 VSSL--SGNWDTAAELMVAIN 433 (462)
Q Consensus 415 ~~~~--~g~~~~A~~~~~~~~ 433 (462)
++-. ...+++|+.-|+.+.
T Consensus 244 A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHhCCHHHHHHHHHHHcccC
Confidence 6643 345556665555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00072 Score=48.37 Aligned_cols=81 Identities=7% Similarity=-0.018 Sum_probs=66.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHHCCC-CCCHHHHHHHHHHHhccc--------chHhHHHHHHHHHHhCCCchHhH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKLANE-SPNSVTLVSLVSACTSLI--------NVRAGESIHSYAVVNGLELDVAL 239 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 239 (462)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-....+|+.|...++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334456666777999999999999999999 899999999998876543 24456778999999999999999
Q ss_pred HHHHHHHHHh
Q 012504 240 GTALVEMYSK 249 (462)
Q Consensus 240 ~~~l~~~~~~ 249 (462)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00019 Score=50.12 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=40.8
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHH
Q 012504 281 NGRGNYAISLFAKMIQTGLK-PDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 281 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 358 (462)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.. ...| +......+.++|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666654321 12333333556666666666666666552 1122 223333445666666666666
Q ss_pred HHHHHh
Q 012504 359 YHIIRN 364 (462)
Q Consensus 359 ~~~~~~ 364 (462)
++.|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00041 Score=63.48 Aligned_cols=118 Identities=6% Similarity=0.015 Sum_probs=82.7
Q ss_pred CCccchHhHHHHHHHhcCChhHHHHHHhcCCCC------ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHH
Q 012504 133 DSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR------DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLV 206 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 206 (462)
+.+......+++.+....+++.+..++-+.... -..+..++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334445555666666666677777766666531 12355678888888888888888888878888888888888
Q ss_pred HHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 012504 207 SLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC 250 (462)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 250 (462)
.+|+.+.+.|++..|.++..+|...+...+..++...+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888777776666666665555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=61.22 Aligned_cols=108 Identities=13% Similarity=0.024 Sum_probs=87.6
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVL 388 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~ 388 (462)
-..+.+++.+|+..|.+.+. +.| |...|..-..+|.+.|.++.|++-.+.... .| ....|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~- 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY- 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH-
Confidence 35678999999999999985 454 577778889999999999999998888743 33 467899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHH
Q 012504 389 YLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 389 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 423 (462)
.+|.+.|++++.++|++......|-.+-.+.+...
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999866666655555544444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00061 Score=55.00 Aligned_cols=93 Identities=15% Similarity=-0.041 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP----NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
...|..++..+...|++++|...|++... .| ...++..+...+...|+. +.|...++++.+..|.....+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~-~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH-TKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 55667777788888999999988887631 12 235788888899999999 9999999999999998888888888
Q ss_pred HHHh-------hcCCHHHHHHHHHHH
Q 012504 414 SVSS-------LSGNWDTAAELMVAI 432 (462)
Q Consensus 414 ~~~~-------~~g~~~~A~~~~~~~ 432 (462)
.++. +.|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 788888666555543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.065 Score=51.62 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 012504 302 DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGAC 381 (462)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 381 (462)
..-+.+--+.-+...|+..+|.++-++.. -||...|..-+.+++..++|++-+++-+..+. +..|.-++.+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHH
Confidence 33345555566677888889988777663 47778888888999999999998888877762 56677789999
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
.+.|+. ++|..++.+..... ....+|.+.|++.+|.++-
T Consensus 755 ~~~~n~-~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNK-DEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccH-HHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 999999 99988876554322 5777888999999888764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.002 Score=52.22 Aligned_cols=89 Identities=15% Similarity=0.037 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC--HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 167 VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN--SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 33455666666667777777777777665332221 2456666666777777777777777766653 33445555566
Q ss_pred HHHHhcCChHHH
Q 012504 245 EMYSKCGHVEKA 256 (462)
Q Consensus 245 ~~~~~~~~~~~a 256 (462)
.++...|+...+
T Consensus 114 ~~~~~~g~~~~a 125 (172)
T PRK02603 114 VIYHKRGEKAEE 125 (172)
T ss_pred HHHHHcCChHhH
Confidence 666666554433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0046 Score=59.09 Aligned_cols=66 Identities=17% Similarity=0.095 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 340 EHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
..|..+.-.....|++++|...++++.. .|+...|..+...+...|+. ++|...++++.+++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~-~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDN-RLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCc
Confidence 3444443333344555555555544422 34444444455555555555 555555555555555544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0006 Score=57.83 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=82.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcC
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAG 353 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 353 (462)
..-+.+.+++++|+..|.+.+... +-|++-|..=..+|.+.|.++.|++-.+..+ .+.|. ...|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 455788899999999999999863 2366777777889999999999999888877 44565 788999999999999
Q ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 012504 354 LIEEAYHIIRNMPT-EPNAVILRSFLG 379 (462)
Q Consensus 354 ~~~~A~~~~~~~~~-~~~~~~~~~l~~ 379 (462)
++++|++.|++... .|+..+|..=+.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 99999999998754 677767655443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0027 Score=60.69 Aligned_cols=137 Identities=14% Similarity=0.060 Sum_probs=97.0
Q ss_pred CCCCCHHHHHHHHHHhhc-----cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhc--------CCHHHHHHHHH
Q 012504 298 GLKPDSISFSAILSACSH-----LGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRA--------GLIEEAYHIIR 363 (462)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~A~~~~~ 363 (462)
+.+.+...|...+++... .++...|..+|++..+. .|+ ...|..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345667778877776432 23467888888888753 565 44454444433221 12344455544
Q ss_pred hCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 364 NMP----TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 364 ~~~----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
+.. ...++..+..+.-.....|++ ++|...++++.+++|. ...|..++.++...|+.++|.+.+++..+.++..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~-~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKT-DEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 421 234567787777777788999 9999999999999994 6789999999999999999999999998877653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.054 Score=48.36 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=81.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNH 384 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 384 (462)
+.+..+.-|...|....|.++-++. .+ |+...|...+++|+..++|++-.++-.. +.++..|..++.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4555566667778887777765554 43 7888899999999999999998887654 23457788899999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 385 GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 385 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
|+. .+|..+..+ - .+..-+..|.++|++.+|.+.-
T Consensus 251 ~~~-~eA~~yI~k----~-----~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNK-KEASKYIPK----I-----PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCH-HHHHHHHHh----C-----ChHHHHHHHHHCCCHHHHHHHH
Confidence 999 888888776 1 2256777888999999887664
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.019 Score=45.28 Aligned_cols=99 Identities=17% Similarity=0.085 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC-----ChhhHHH
Q 012504 199 SPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK-----NLQSWTI 273 (462)
Q Consensus 199 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 273 (462)
.|+...-..+..+....|+..+|...|.+....-+..|......+.++....+++..|...++++-+- .+.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 35555455555666666666666666666655444555555555666666666666666666555431 1223344
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC
Q 012504 274 MISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
+...|...|++.+|..-|+...+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 455555556666666666655553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.004 Score=48.14 Aligned_cols=89 Identities=13% Similarity=0.057 Sum_probs=42.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 012504 172 SMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCG 251 (462)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (462)
.+...+...|++++|.++|+.+.... +-+..-|..|..++-..|++++|+..|....... +.++..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33334445555555555555554432 1233334444444445555555555555555544 334444444555555555
Q ss_pred ChHHHHHHHhh
Q 012504 252 HVEKAFKVFNL 262 (462)
Q Consensus 252 ~~~~a~~~~~~ 262 (462)
+.+.|.+.|+.
T Consensus 118 ~~~~A~~aF~~ 128 (157)
T PRK15363 118 NVCYAIKALKA 128 (157)
T ss_pred CHHHHHHHHHH
Confidence 55555554443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0016 Score=59.75 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC--CCchHhHHHHHHHHHHhcCChHHHHHHHhhccC----CChhhH
Q 012504 198 ESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG--LELDVALGTALVEMYSKCGHVEKAFKVFNLMRE----KNLQSW 271 (462)
Q Consensus 198 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 271 (462)
.+.+......+++.+....+++.+..++....... ...-..+..++++.|.+.|..+.+..+++.=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34556666666666666666666666666655441 112223334566666666666666666555433 455566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH 315 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 315 (462)
+.++..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666666555544455555555544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00024 Score=46.77 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+...+.+.|++++|.+.|+++.. .| +...+..+..++...|++ +.|...++++.+..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~-~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY-DEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCCC
Confidence 45567778888888888877643 24 466777777788888888 888888888888887753
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=58.50 Aligned_cols=128 Identities=11% Similarity=-0.054 Sum_probs=87.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHH---HHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEM---ARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNM-------PT-EPNAV 372 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~-~~~~~ 372 (462)
.|..|...|.-.|+++.|+...+.- .+.+|-.. ....+..+..++.-.|+++.|.+.|+.. .. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5666666667778888887665532 22233322 2456777888888888888888888764 11 23445
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc----C--CCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKL----E--PELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
+..+|...|.-..++ +.|+.++.+-+.+ + -.....+.+|+.+|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~-~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEV-QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566778888878888 8888888775543 1 2234678888999999999998888776544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.023 Score=44.91 Aligned_cols=132 Identities=11% Similarity=0.056 Sum_probs=96.0
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHHH
Q 012504 299 LKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP---NAVIL 374 (462)
Q Consensus 299 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~---~~~~~ 374 (462)
..|+...-..|..+....|+..+|...|++...- -+.-|......+.++....+++..|...++.+.+ +| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3566666667778888888888888888888763 3455677777888888888888888888887633 11 23334
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
-.+.+.+...|.. ..|+..|+.+...-|+. ......+..+.++|+.++|..-+..+.
T Consensus 164 Ll~aR~laa~g~~-a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKY-ADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCc-hhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4467788888888 88888888888876653 355666777788888777766555444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.065 Score=47.62 Aligned_cols=292 Identities=13% Similarity=0.013 Sum_probs=173.7
Q ss_pred HHHHHHHhh--hhcCchhHHHHHHHHHHhCCCCccchHhHHHHHH--HhcCChhHHHHHHhcCCCCChhh----HHHHHH
Q 012504 104 YPFVVKACG--RCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMY--AACKEIDVAKAVFEEMPVRDVVS----WSSMIA 175 (462)
Q Consensus 104 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~----~~~l~~ 175 (462)
|..|-.++. ..|+-..|.++-.+..+. +..|......|+.+- .-.|+.+.|.+-|+.|... +.+ ...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHH
Confidence 544544433 346666666655543322 233444444444433 3469999999999998752 222 222333
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC-CCchHhH--HHHHHHHHH---h
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG-LELDVAL--GTALVEMYS---K 249 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~ 249 (462)
.-.+.|..+.|..+-+..-..- +--.......+...+..|+|+.|+++.+.-.... +.++..- -..|+.+-. -
T Consensus 163 eAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 3456788888888877765532 2234567778888899999999999988766543 2333321 112222211 1
Q ss_pred cCChHHHHHHHhhcc--CCChh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 250 CGHVEKAFKVFNLMR--EKNLQ-SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
.-+...|...-.+.. +||.. .--.-..++.+.|+..++-.+++.+-+....|+.. . +....+.|+ .+..-+
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~--lY~~ar~gd--ta~dRl 315 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--L--LYVRARSGD--TALDRL 315 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--H--HHHHhcCCC--cHHHHH
Confidence 123444444443333 34443 23334577889999999999999988875555432 2 222344554 344444
Q ss_pred HHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhcCC
Q 012504 327 DEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMP-TEPNAVILRSFLGAC-RNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 327 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~~~a~~~~~~~~~~~p 403 (462)
++..+...++|| ......+.++-...|++..|..--+... ..|....|..|...- ...|+- .++.+.+.+..+ .|
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDq-g~vR~wlAqav~-AP 393 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQ-GKVRQWLAQAVK-AP 393 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCch-HHHHHHHHHHhc-CC
Confidence 444444356665 5666677788888899888876665543 347777777777654 345888 888888887776 34
Q ss_pred CCC
Q 012504 404 ELG 406 (462)
Q Consensus 404 ~~~ 406 (462)
.+|
T Consensus 394 rdP 396 (531)
T COG3898 394 RDP 396 (531)
T ss_pred CCC
Confidence 444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0038 Score=50.32 Aligned_cols=79 Identities=10% Similarity=-0.071 Sum_probs=42.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCC--CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKLANESP--NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEM 246 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (462)
.|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...... +.....+..+..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 45555556666677777777766665432121 12355556666666666666666666665542 2223334444444
Q ss_pred HH
Q 012504 247 YS 248 (462)
Q Consensus 247 ~~ 248 (462)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.055 Score=46.43 Aligned_cols=58 Identities=7% Similarity=-0.005 Sum_probs=32.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHHCCCCCCH-HHH---HHHHHHHhcccchHhHHHHHHHHHHh
Q 012504 172 SMIAGFVACDSPSDALKVFHRMKLANESPNS-VTL---VSLVSACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
.....+...|++++|.+.|+.+...- |+. ... ..+..++.+.++++.|...+++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33444555677777777777766642 222 111 23445556666666666666666655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00089 Score=57.75 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=41.5
Q ss_pred HhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCC
Q 012504 350 GRAGLIEEAYHIIRNMPT-EPN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGN 421 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~ 421 (462)
.+.|++++|...|+.... .|+ +..+..+...|...|++ +.|...|+.+.+..|+++ .++..++.++...|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~-~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK-DDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 334555555555544421 122 12333445555555555 555555555555544432 333344555555555
Q ss_pred HHHHHHHHHHHhcCC
Q 012504 422 WDTAAELMVAINQKG 436 (462)
Q Consensus 422 ~~~A~~~~~~~~~~~ 436 (462)
+++|..+|+.+++..
T Consensus 233 ~~~A~~~~~~vi~~y 247 (263)
T PRK10803 233 TAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHHC
Confidence 555555555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0062 Score=45.33 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=50.9
Q ss_pred HHHHHcCCChhHHHHHHHHhHHCCCCCCH--HHHHHHHHHHhcccchHhHHHHHHHHHHhCCC--chHhHHHHHHHHHHh
Q 012504 174 IAGFVACDSPSDALKVFHRMKLANESPNS--VTLVSLVSACTSLINVRAGESIHSYAVVNGLE--LDVALGTALVEMYSK 249 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 249 (462)
..++-..|+.++|+.+|++....|+.... ..+..+..++...|++++|..+++........ .+......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455566666666666666666554332 23444555566666666666666665544211 011222223334455
Q ss_pred cCChHHHHHHHhhccCCChhhHHHHHH
Q 012504 250 CGHVEKAFKVFNLMREKNLQSWTIMIS 276 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~~~~~~~~~l~~ 276 (462)
.|+.++|.+.+-....++...|..-|.
T Consensus 88 ~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 88 LGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554443333333333333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0018 Score=57.01 Aligned_cols=129 Identities=9% Similarity=0.014 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM-LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGA 380 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 380 (462)
.+|..+++...+.+..+.|..+|.+..+. ...+..+|...... |...++.+.|.++|+.... ..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888999999999999999853 23344455544444 3335677779999999754 4577888999999
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
+...++. +.+..+|+++...-|.+. .+|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~-~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDI-NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-H-HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999 999999999998765544 57888999889999999999999888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.12 Score=49.45 Aligned_cols=131 Identities=6% Similarity=-0.085 Sum_probs=75.9
Q ss_pred CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHC-CCCCCcchHHHH-------HHHhhhhcCchhH
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-GLRPDNFTYPFV-------VKACGRCLLIGIG 120 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l-------l~~~~~~~~~~~a 120 (462)
.+++|.++.+.- |....|..+.......-.++.|...|-+.... |++.-. -...+ ...-+-.|.+++|
T Consensus 678 gledA~qfiEdn---PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vk-rl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN---PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVK-RLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC---CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHH-HhhhhhhHHHHhHhHhhhhcchhHh
Confidence 455555555444 66778888887777777777777776554332 222100 00000 1112234788888
Q ss_pred HHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC-----ChhhHHHHHHHHHcCCChhHHHHHHHH
Q 012504 121 GSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR-----DVVSWSSMIAGFVACDSPSDALKVFHR 192 (462)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 192 (462)
+++|-+|-+++ ..+..+.+.|++-...++++.-... -..+|+.+...+.....|++|.+.|..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887776653 3456667778887777777664322 123566666666666666666666543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.015 Score=48.47 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=89.8
Q ss_pred HHHHHHhcCChHHHHHHHhhccC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 012504 243 LVEMYSKCGHVEKAFKVFNLMRE--KN----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH- 315 (462)
Q Consensus 243 l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~- 315 (462)
....+...|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...+++..+.-+.-....+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34445566777777777776653 21 134445566777777777777777777665221111122222222211
Q ss_pred ------------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 012504 316 ------------LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRN 383 (462)
Q Consensus 316 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 383 (462)
.+....|...|+.+ +.-|=...-..+|...+..+...--..- ..+..-|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~l----------------i~~yP~S~y~~~A~~~l~~l~~~la~~e-~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEEL----------------IKRYPNSEYAEEAKKRLAELRNRLAEHE-LYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHH----------------HHH-TTSTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHHHHH----------------HHHCcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 12223333444433 4444444445555555544432111111 124667889
Q ss_pred cCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCCHHHHH
Q 012504 384 HGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 384 ~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 426 (462)
.|.+ ..|..-++.+.+.-|+.+ .....++.+|.+.|..+.|.
T Consensus 154 ~~~y-~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKY-KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-H-HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccH-HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999 999999999999888875 34667888888999887554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00061 Score=55.17 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=79.2
Q ss_pred HHHHHhccCC-CCCCcccHHHHHHHHHhC-----CCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhh-----------
Q 012504 52 FTRSLFNNLP-VTPPLFAYNTLIRAYAKT-----SCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRC----------- 114 (462)
Q Consensus 52 ~A~~~~~~~~-~~~~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------- 114 (462)
--...|+..+ ...+-.+|..+++.|.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 3445566653 237888999999988754 67777788899999999999999999999987542
Q ss_pred -----cCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCC
Q 012504 115 -----LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKE 151 (462)
Q Consensus 115 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (462)
.+.+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 3456688999999999999999999999998866654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0069 Score=45.08 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=58.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHH
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPD--SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLG 350 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 350 (462)
...++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888887776544 23555666677778888888888887776421101 1222223344566
Q ss_pred hcCCHHHHHHHHHhC
Q 012504 351 RAGLIEEAYHIIRNM 365 (462)
Q Consensus 351 ~~~~~~~A~~~~~~~ 365 (462)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 778888887776543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.071 Score=48.10 Aligned_cols=163 Identities=14% Similarity=0.110 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccCC-------ChhhHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012504 240 GTALVEMYSKCGHVEKAFKVFNLMREK-------NLQSWTIMISGLAD---NGRGNYAISLFAKMIQTGLKPDSISFSAI 309 (462)
Q Consensus 240 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 309 (462)
...++-+|....+++..+++++.+... ....-.....++.+ .|+.++|.+++..+....-.+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334555677788888888888877753 12222334556666 78888888888886666566777788777
Q ss_pred HHHhhc---------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC-HH---HHHHHH---Hh-CC------
Q 012504 310 LSACSH---------LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL-IE---EAYHII---RN-MP------ 366 (462)
Q Consensus 310 l~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~A~~~~---~~-~~------ 366 (462)
.+.|-. ....+.|...|.+.- .+.|+...--.++..+.-.|. ++ +..++- .. ..
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 776532 224667777777654 444553332223333333332 11 222222 11 11
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 367 TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
...+--.+.+++.++.-.|+. +.|.+..+++.++.|+.-
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~-~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDY-EKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCH-HHHHHHHHHHhhcCCcch
Confidence 123445566788899999999 999999999999877653
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0028 Score=51.47 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=73.5
Q ss_pred HHHHhcC--CCCChhhHHHHHHHHHc-----CCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc-------------
Q 012504 156 KAVFEEM--PVRDVVSWSSMIAGFVA-----CDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSL------------- 215 (462)
Q Consensus 156 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------------- 215 (462)
...|++. ..++..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 34566677777766654 467777777888888889999999999999886542
Q ss_pred ---cchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 216 ---INVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 216 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
.+-+-+.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346688999999999999999999999999877654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00016 Score=40.02 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHH
Q 012504 395 GKLLLKLEPELGANYVLAASVSSLSGNWDTAAE 427 (462)
Q Consensus 395 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 427 (462)
++++++++|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00063 Score=45.37 Aligned_cols=64 Identities=20% Similarity=0.055 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCC
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHG-QVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~~~~p 403 (462)
...|..+...+...|++++|+..|++... +.+...|..+..++...| ++ +.|...++++.+++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~-~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDY-EEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH-HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccH-HHHHHHHHHHHHcCc
Confidence 44566666666667777777776666532 234556666666677776 56 777777777776665
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0015 Score=43.37 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=33.2
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILR 375 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~ 375 (462)
..|++++|..+|+.+... .+-+...+..+..+|.+.|++++|.++++++.. .|+...|.
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 456666666666666553 222455555666666666666666666666643 34433333
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.12 Score=43.51 Aligned_cols=261 Identities=11% Similarity=0.028 Sum_probs=149.7
Q ss_pred hCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHH
Q 012504 29 TSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVV 108 (462)
Q Consensus 29 ~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 108 (462)
.|+.....+..+++ ...|+. .++..|-..........|+.-+..+.+....++|..-++...+.+ .||-. |...=
T Consensus 35 ~~~~~~~~~~g~~~--~~~~~~-~~~~~~l~~~t~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p 109 (366)
T KOG2796|consen 35 RNWRAAVDLCGRLL--TAHGQG-YGKSGLLTSHTTDSLQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYP 109 (366)
T ss_pred hhhHHHHhhhHHHH--HHHhhh-hhhhheeeccchhHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeecc
Confidence 45555555555555 444433 444444332221333445666777888777777776665554432 11110 00000
Q ss_pred HHh-hhhc-CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC----------ChhhHHHHHHH
Q 012504 109 KAC-GRCL-LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR----------DVVSWSSMIAG 176 (462)
Q Consensus 109 ~~~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~l~~~ 176 (462)
..+ .+.| .+.-+..++......- ...-++.|.+.+.-..-+.+-+..++.-..+ -....+.++..
T Consensus 110 ~iyp~rrGSmVPFsmR~lhAe~~~~---lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~ 186 (366)
T KOG2796|consen 110 HVYPGRRGSMVPFSMRILHAELQQY---LGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANC 186 (366)
T ss_pred ccCCCCcCccccHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 000 0111 1122222222111110 1122355555555544445544444443322 12344566777
Q ss_pred HHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC-----CCchHhHHHHHHHHHHhcC
Q 012504 177 FVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG-----LELDVALGTALVEMYSKCG 251 (462)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 251 (462)
+.-.|.+.-.+..+++.++...+.++.....+++...+.||.+.|...++...+.. +.-...+.......|.-.+
T Consensus 187 llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 187 LLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQN 266 (366)
T ss_pred HhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheeccc
Confidence 77788888888899998887666677788888888888999999999998777643 2333333344445667778
Q ss_pred ChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 252 HVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 252 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
++..|...+.++... +++.-|.-.-+..-.|+..+|++.++.|...
T Consensus 267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888877753 4555565555666678889999999998876
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.31 Score=47.27 Aligned_cols=114 Identities=14% Similarity=0.052 Sum_probs=53.5
Q ss_pred CCHHHHHHHhccCCCCCC---cccHHHHHHHHHhCCCc--hhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHH
Q 012504 48 ISLHFTRSLFNNLPVTPP---LFAYNTLIRAYAKTSCS--IESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGS 122 (462)
Q Consensus 48 ~~~~~A~~~~~~~~~~~~---~~~y~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 122 (462)
+.+..|.++-..+.. |. ...|.....-+.+..+. +.+++..++=...-. -...+|..+.+.....|+++.|..
T Consensus 451 ~~Y~vaIQva~~l~~-p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~k 528 (829)
T KOG2280|consen 451 HLYSVAIQVAKLLNL-PESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARK 528 (829)
T ss_pred chhHHHHHHHHHhCC-ccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHH
Confidence 366666666666555 33 33344444444444322 122222222111111 234456666666666777777766
Q ss_pred HHHHHHHhCC----CCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 123 VHSLIFKVGL----DSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 123 ~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
+++.=...+. -.+..-+...+.-+...|+.+-...++-.+.
T Consensus 529 Lle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 529 LLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 6654222211 0122223444455556666666666555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.13 Score=42.86 Aligned_cols=58 Identities=9% Similarity=-0.041 Sum_probs=30.5
Q ss_pred HHHHHcCCChhHHHHHHHHhHHCCC--CCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh
Q 012504 174 IAGFVACDSPSDALKVFHRMKLANE--SPNSVTLVSLVSACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
...+...|++.+|.+.|+.+...-. +--......++.++.+.|+++.|...++...+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566667777777766655311 111223344555666666666666666666554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0056 Score=54.35 Aligned_cols=257 Identities=13% Similarity=0.030 Sum_probs=144.2
Q ss_pred HHHHhCCCchhHHHHHHHHHHCCCCCCc----chHHHHHHHhhhhcCchhHHHHHHHHH--H--hCCC-CccchHhHHHH
Q 012504 74 RAYAKTSCSIESIKLFDEMLKTGLRPDN----FTYPFVVKACGRCLLIGIGGSVHSLIF--K--VGLD-SDKYIGNTLLR 144 (462)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~ 144 (462)
.-+++.|+....+.+|+..++.|.. |. .+|..+-++|.-.+++++|+++...=+ . .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478999999999999999998754 44 346667777888899999988765322 1 1111 01122234445
Q ss_pred HHHhcCChhHHHHHHhcCC-------CC--ChhhHHHHHHHHHcCCC--------------------hhHHHHHHHHhH-
Q 012504 145 MYAACKEIDVAKAVFEEMP-------VR--DVVSWSSMIAGFVACDS--------------------PSDALKVFHRMK- 194 (462)
Q Consensus 145 ~~~~~~~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~- 194 (462)
.+--.|.+++|.-.-.+-. .+ ...++-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 5555677777665433221 00 12234444555544432 123444443211
Q ss_pred ---HCCCC-CCHHHHHHHHHHHhcccchHhHHHHHHHHHH----hCCC-chHhHHHHHHHHHHhcCChHHHHHHHhhcc-
Q 012504 195 ---LANES-PNSVTLVSLVSACTSLINVRAGESIHSYAVV----NGLE-LDVALGTALVEMYSKCGHVEKAFKVFNLMR- 264 (462)
Q Consensus 195 ---~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 264 (462)
+.|-. ..-..|..|.+.|.-.|+++.|+...+.-+. .|-. ..-..+..+.+++.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11100 1123455555556666778877766544322 2211 123456677778888888888888776543
Q ss_pred ------CCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 265 ------EKNL--QSWTIMISGLADNGRGNYAISLFAKMIQ----TG-LKPDSISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 265 ------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
.+.+ .+.-+|...|.-..++++|+.++.+-.. .+ ..-....+..|..++...|..++|..+.....+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1222 3344566666666777777776655332 11 122345666777777777777777766655443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0032 Score=57.32 Aligned_cols=62 Identities=11% Similarity=-0.044 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMP-TEPNA----VILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
...++.+..+|.+.|++++|+..|++.. ..|+. ..|..+..+|...|+. ++|...++++.+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~-dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG-KKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Confidence 4555556666666666666666665532 23332 2355566666666666 6666666666654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0013 Score=39.10 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
.++..+...|...|++ +.|+++++++.+..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~-~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQP-DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567788889999999 99999999999999999888877764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0022 Score=50.37 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh-----cCCCccCCcc
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN-----QKGLNKVPGC 443 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 443 (462)
.....++..+...|++ +.+..+.+.+...+|-+...+..++.+|...|+..+|.++|+.+. +.|+.|.+.+
T Consensus 63 ~~~~~l~~~~~~~~~~-~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDY-EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-H-HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3455677778889999 999999999999999999999999999999999999999998875 3587776643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.045 Score=45.86 Aligned_cols=136 Identities=12% Similarity=0.029 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHH-----H
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHY-----G 343 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 343 (462)
.+.+.++..+.-.|.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...|+...+..+ ..+.... .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 345666777777788888888899988876666777888888888889999999999997776522 2332222 3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNMPTE--PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
.....|.-.+++..|...+.++... .++...|.-.-+..-.|+. ..|.+..+.+.+..|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l-~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL-KDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH-HHHHHHHHHHhccCCccc
Confidence 3334456677888888888887653 2344444444445567788 888888888888877654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.018 Score=49.79 Aligned_cols=101 Identities=11% Similarity=0.079 Sum_probs=73.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP----NAVILRSFL 378 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----~~~~~~~l~ 378 (462)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+.. .| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455555444566888899888888887532111 135667788888889999999988888742 12 245555667
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
..+...|+. +.|..+++.+.+..|++.
T Consensus 225 ~~~~~~g~~-~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDT-AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCH-HHHHHHHHHHHHHCcCCH
Confidence 778888999 999999999999888875
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.07 Score=45.90 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhCCC--CCCHHHH
Q 012504 300 KPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG---LIEEAYHIIRNMPT--EPNAVIL 374 (462)
Q Consensus 300 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~--~~~~~~~ 374 (462)
+-|...|..|..+|...|+++.|...|....+. ..+++..+..+.+++.... ...++.++|+++.. +.++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 336778999999999999999999999998863 3445667777776665432 36688889988743 3456677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
..|...+...|++ ..|...++.+.+..|.+. .+..++
T Consensus 231 ~lLA~~afe~g~~-~~A~~~Wq~lL~~lp~~~-~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDY-AEAAAAWQMLLDLLPADD-PRRSLI 267 (287)
T ss_pred HHHHHHHHHcccH-HHHHHHHHHHHhcCCCCC-chHHHH
Confidence 7777889999999 999999999999877765 333333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0034 Score=42.32 Aligned_cols=62 Identities=11% Similarity=-0.018 Sum_probs=45.9
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchH
Q 012504 347 DMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANY 409 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 409 (462)
..|.+.+++++|.++++.+.. +.++..|......+...|++ ..|...++.+.+..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY-EEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH-HHHHHHHHHHHHHCCCcHHHH
Confidence 457778888888888887643 33556666677778888888 888888888888888776443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.017 Score=43.50 Aligned_cols=53 Identities=21% Similarity=0.180 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 012504 298 GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350 (462)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (462)
...|+..+..+++.+|+..+++..|.++.+.+.+.++++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46788888888888888888999999999988888888888888888876544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0017 Score=44.48 Aligned_cols=61 Identities=10% Similarity=0.019 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhc----CCC---CCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKL----EPE---LGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.+++.+...|...|++ ++|+..++++.++ +++ ...++..++.+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRY-DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666777777777 7777777776643 222 13456677778888888888888777654
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.39 Score=43.74 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=51.0
Q ss_pred CCchhhhhhHh-hhhhcCCHHHHHHHhccCCCC-C-CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHH
Q 012504 32 DHNTCIISRFI-LTSLSISLHFTRSLFNNLPVT-P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVV 108 (462)
Q Consensus 32 ~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~-~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 108 (462)
+.|...|-.|+ .....+..+..+++++++..+ | =..+|..-|.+=....++.....+|.+.+.... +...|...+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 45667777777 223333788888888888663 1 123566666666667788888888888777543 455555555
Q ss_pred HHhhhh
Q 012504 109 KACGRC 114 (462)
Q Consensus 109 ~~~~~~ 114 (462)
.-..+.
T Consensus 117 ~YIRr~ 122 (660)
T COG5107 117 EYIRRV 122 (660)
T ss_pred HHHHhh
Confidence 544333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0077 Score=50.88 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=29.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCC---CchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPEL---GANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
|..++...|++ +.|...|..+.+..|+. |+.+.-|+.+..+.|+.++|..+|+++++.
T Consensus 184 LGe~~y~qg~y-~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDY-EDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccc-hHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45555555555 55555555555443333 234445555555555555555555555443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.054 Score=41.25 Aligned_cols=91 Identities=12% Similarity=-0.007 Sum_probs=55.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch---HHHHHHHHh
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPTE-----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN---YVLAASVSS 417 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~ 417 (462)
.....+.|++++|.+.|+.+..+ -....--.++.+|.+.+++ +.|...+++.++++|.++.+ +...+.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y-~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY-EEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 33445667777777777776432 1233444567777777777 77777777777777776543 333333333
Q ss_pred hcCC---------------HHHHHHHHHHHhcCCC
Q 012504 418 LSGN---------------WDTAAELMVAINQKGL 437 (462)
Q Consensus 418 ~~g~---------------~~~A~~~~~~~~~~~~ 437 (462)
++.. ..+|..-|+.+++.-+
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 4433 6677777777776544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.097 Score=49.62 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=24.1
Q ss_pred HHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCC
Q 012504 24 TLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPV 62 (462)
Q Consensus 24 ~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~ 62 (462)
+++.++|-.|+........ ...|.+.+|.++|.+-+.
T Consensus 624 ~~~k~rge~P~~iLlA~~~--Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 624 EERKKRGETPNDLLLADVF--AYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred HHHHhcCCCchHHHHHHHH--HhhhhHHHHHHHHHHcCc
Confidence 4455667667776666666 555677777777766554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.15 Score=43.77 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=71.7
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCChHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRS---FLGACRNHGQVLY 389 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~ 389 (462)
....|++.+|...|+..... .+-+...-..+.++|...|+.+.|..++..++.+-...-+.. -+..+.+.... .
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~-~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT-P 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC-C
Confidence 45667777777777777653 233355566677777778888888888877765432222222 12223333332 2
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 390 LDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
.. .-++.-...+|+|...-..++..+...|+.++|.+.+=.+.++
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 2233344457777777777787888888888877776666544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.027 Score=50.31 Aligned_cols=137 Identities=14% Similarity=0.017 Sum_probs=97.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
...|.+.|++..|..-|++.... +. +...-+.++..... .+ -..++..+.-+|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~~--------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-AL--------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-HH--------HHHHhhHHHHHHHhhhh
Confidence 45677777777777777766542 10 11111112222111 11 12356778889999999
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHH-HHHHHH
Q 012504 355 IEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTA-AELMVA 431 (462)
Q Consensus 355 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 431 (462)
+..|++..+.... +++......=..++...|++ +.|+..|++++++.|.+-.+...++.+-.+...+.+. .++|..
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~-~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEY-DLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888643 56777777778899999999 9999999999999999988888888887776665554 778888
Q ss_pred Hhc
Q 012504 432 INQ 434 (462)
Q Consensus 432 ~~~ 434 (462)
|-.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 854
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.014 Score=52.02 Aligned_cols=68 Identities=9% Similarity=-0.034 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 371 AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
..++..+.-+|.+.+++ ..|+....+++..+|++...++.-+.++...|+++.|+..|+++.+..+..
T Consensus 257 ~~~~lNlA~c~lKl~~~-~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEY-KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHhhHHHHHHHhhhhH-HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 44667788889999999 999999999999999999999999999999999999999999998876543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.71 Score=42.25 Aligned_cols=98 Identities=6% Similarity=-0.005 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHHh-CCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCC-----------------CCcccHHHHHHHH
Q 012504 15 TVHHLHQLHTLFLKT-SLDHNTCIISRFILTSLSISLHFTRSLFNNLPVT-----------------PPLFAYNTLIRAY 76 (462)
Q Consensus 15 ~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~-----------------~~~~~y~~li~~~ 76 (462)
+++........+.+. |-.+=...+..++ +-.-+....|.+.|...... +|..-=+..+..+
T Consensus 60 nld~Me~~l~~l~~~~~~s~~l~LF~~L~-~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sL 138 (549)
T PF07079_consen 60 NLDLMEKQLMELRQQFGKSAYLPLFKALV-AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSL 138 (549)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHH
Confidence 455555555555543 3222222333333 22223777777766433211 2222224456778
Q ss_pred HhCCCchhHHHHHHHHHHCC----CCCCcchHHHHHHHhhh
Q 012504 77 AKTSCSIESIKLFDEMLKTG----LRPDNFTYPFVVKACGR 113 (462)
Q Consensus 77 ~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~~~ 113 (462)
...|++.++..+++++...= ...+..+|+.++-.+++
T Consensus 139 Ie~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 139 IETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 89999999999999887653 34788899886655544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.21 Score=37.17 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=77.6
Q ss_pred HHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccch---HhHHHHHHHhcCCh
Q 012504 76 YAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYI---GNTLLRMYAACKEI 152 (462)
Q Consensus 76 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~ 152 (462)
+.-.|..++..++..+...+. +..-+|.+|-.....-+-+-..++++ +.|---|... ...++.+|+..|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~Ld---sIGkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLD---SIGKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHH---HHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHH---HHhhhcCchhhcchHHHHHHHHHhcch
Confidence 344677888888887776642 45556655554444433333333333 3332222221 12344444444432
Q ss_pred hHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC
Q 012504 153 DVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG 232 (462)
Q Consensus 153 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 232 (462)
.......+.....+|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 234455667777888888888888887764 36788888888888999999988888888888887
Q ss_pred CC
Q 012504 233 LE 234 (462)
Q Consensus 233 ~~ 234 (462)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 43
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.078 Score=48.71 Aligned_cols=143 Identities=8% Similarity=0.008 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHhhc---------cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 012504 284 GNYAISLFAKMIQT-GLKPD-SISFSAILSACSH---------LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA 352 (462)
Q Consensus 284 ~~~a~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (462)
.+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.+.-+...+. -+.|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 34566666666622 23444 2344444443321 11233444444444431 123355555555555556
Q ss_pred CCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch--HHHHHHHHhhcCCHHHHHHH
Q 012504 353 GLIEEAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN--YVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 353 ~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~ 428 (462)
++++.|...|++... .| ...+|......+.-.|+. ++|.+.++++.++.|..... ....+..|... ..++|+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~-~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKI-EEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH-HHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 666666666666532 23 244444444455566666 66666666666666655422 22222234333 34555555
Q ss_pred HH
Q 012504 429 MV 430 (462)
Q Consensus 429 ~~ 430 (462)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 43
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=1 Score=43.63 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=53.8
Q ss_pred CCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHH------
Q 012504 132 LDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTL------ 205 (462)
Q Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------ 205 (462)
++.+....-.+.+++.+.|.-++|.+.|-+...|- ..+..|...++|.+|.++-++..- |...|.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aa 918 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAA 918 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHH
Confidence 45566677778888888888888888887766552 233455556666666666544321 111111
Q ss_pred --------HHHHHHHhcccchHhHHHHHHHHHH
Q 012504 206 --------VSLVSACTSLINVRAGESIHSYAVV 230 (462)
Q Consensus 206 --------~~l~~~~~~~~~~~~a~~~~~~~~~ 230 (462)
...|....+.|..-.|.+++.+|.+
T Consensus 919 qll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 919 QLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1123445677776666666666654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.15 Score=47.79 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=99.5
Q ss_pred HHHhCCCchhHHHHHHH--HHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh
Q 012504 75 AYAKTSCSIESIKLFDE--MLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 75 ~~~~~g~~~~a~~~~~~--m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (462)
...-+|+++++.++.+. +.. .+ .....+.+++-+.+.|..+.|+++..+ + ..-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCH
Confidence 34457788887766641 111 12 244577778888888888888876443 2 2345667788999
Q ss_pred hHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC
Q 012504 153 DVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG 232 (462)
Q Consensus 153 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 232 (462)
+.|.++.++.. +...|..|.....+.|+++-|.+.|.+... +..|+-.|...|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998888776 566899999999999999999999887653 5566666777788887777777777665
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhhc
Q 012504 233 LELDVALGTALVEMYSKCGHVEKAFKVFNLM 263 (462)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 263 (462)
. ++....++.-.|+.+++.+++.+.
T Consensus 404 -~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 333344455557777777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0086 Score=40.93 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--------EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+|+.+...|...|++++|+..|++... .|+ ..++..+..++...|++ +.|..+++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~-~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY-EEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHh
Confidence 344444555555555555544444310 111 33445555555555555 555555555543
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.39 Score=45.80 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHhhc----cCcHHHHHHHHHHHHHhcCCCCch
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQT-GLKPDS-----ISFSAILSACSH----LGLVDEGKNYFDEMARVYNIKPTM 339 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 339 (462)
....++....-.|+-+.+++.+.+..+. ++.-.. -.|..++..++. ..+.+.|.++++.+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 3444555566667777777777766553 222111 123333333332 45678899999999864 4665
Q ss_pred hHHH-HHHHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHH
Q 012504 340 EHYG-CMVDMLGRAGLIEEAYHIIRNMPT-E-----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLA 412 (462)
Q Consensus 340 ~~~~-~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 412 (462)
..|. .-.+.+...|+.++|++.|++... + .....+.-+...+....++ ++|...+..+.+...-+...|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w-~~A~~~f~~L~~~s~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW-EEAAEYFLRLLKESKWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH-HHHHHHHHHHHhccccHHHHHHHH
Confidence 4444 335667788999999999997643 1 2334555667778889999 999999999998777666555544
Q ss_pred -HHHHhhcCCH-------HHHHHHHHHHhc
Q 012504 413 -ASVSSLSGNW-------DTAAELMVAINQ 434 (462)
Q Consensus 413 -~~~~~~~g~~-------~~A~~~~~~~~~ 434 (462)
+.++...|+. ++|.++++++..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4556678888 889999988764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.21 Score=39.16 Aligned_cols=84 Identities=8% Similarity=-0.020 Sum_probs=35.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 280 DNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 280 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
..|++++|..+|+-+.-.+.. +..-+..|..++-..+++++|...|...... . .-|+..+-....+|...|+.+.|.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHHH
Confidence 445555555555444433211 2222333333344444555555555444321 1 122222333444455555555555
Q ss_pred HHHHhCC
Q 012504 360 HIIRNMP 366 (462)
Q Consensus 360 ~~~~~~~ 366 (462)
..|+...
T Consensus 126 ~~f~~a~ 132 (165)
T PRK15331 126 QCFELVN 132 (165)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.18 Score=42.85 Aligned_cols=100 Identities=17% Similarity=0.109 Sum_probs=73.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC-CHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EP-NAVILRS 376 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~ 376 (462)
.|+.-+..+ +.|++..|...|....+. .+-+ ...+-.|.+++...|++++|..+|..+.. .| -+..+-.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 566666544 557788888888888874 2222 44566688888888888888888877632 22 3467777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
|..+..+.|+. +.|...++++.+.-|+.+.+
T Consensus 221 lg~~~~~l~~~-d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNT-DEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCH-HHHHHHHHHHHHHCCCCHHH
Confidence 77888888888 99999999998888887644
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.8 Score=43.08 Aligned_cols=74 Identities=12% Similarity=-0.035 Sum_probs=43.9
Q ss_pred HHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc
Q 012504 142 LLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN 217 (462)
Q Consensus 142 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 217 (462)
-+..+.+.++++....++..- ..+...-.....+....|+.++|......+-..| ...+..+..++..+.+.|.
T Consensus 105 ~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCC
Confidence 344455677777777733232 3455555666677777788777776666665544 2345556666666654443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.094 Score=41.04 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHH-----hCCCchHhH
Q 012504 171 SSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVV-----NGLELDVAL 239 (462)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 239 (462)
..++..+...|++++|..+.+.+.... +.|...+..+|.++...|+...|.+.|+.+.. .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444455555555555555555432 23445555555555555555555555554432 355555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.4 Score=40.14 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=40.9
Q ss_pred HHHHHHHhcCChhHHHHHHhcCCCC-------ChhhHHHHHHHHHc---CCChhHHHHHHHHhHHCCCCCCHHHHHHHHH
Q 012504 141 TLLRMYAACKEIDVAKAVFEEMPVR-------DVVSWSSMIAGFVA---CDSPSDALKVFHRMKLANESPNSVTLVSLVS 210 (462)
Q Consensus 141 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 210 (462)
.++-.|-...+++..+++++.+... ....-....-++-+ .|+.++|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566667777777777776643 11122223334444 6777777777777555445566666666655
Q ss_pred HH
Q 012504 211 AC 212 (462)
Q Consensus 211 ~~ 212 (462)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.8 Score=37.53 Aligned_cols=161 Identities=10% Similarity=0.007 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++..|.+-+...-+...-.|-...|.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3466666666677777777777777776653222222222222 233456777766655555443122222223322221
Q ss_pred HHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHhhc
Q 012504 348 MLGRAGLIEEAYHII-RNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL-------GANYVLAASVSSLS 419 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 419 (462)
..-++.+|..-+ ++.. ..+...|...+..+.- |+. ..+.+++++.+...++ ..+|..|+.-+...
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gki--S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKI--SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhc--cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 223455555433 3332 2344444433333221 222 1133444444433332 24677777778888
Q ss_pred CCHHHHHHHHHHHhcCC
Q 012504 420 GNWDTAAELMVAINQKG 436 (462)
Q Consensus 420 g~~~~A~~~~~~~~~~~ 436 (462)
|+.++|..+|+-.+..+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 88888888877665443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.052 Score=45.97 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=76.6
Q ss_pred HHHHHHhccCC-CCCCcccHHHHHHHHHhC-----CCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhc---------
Q 012504 51 HFTRSLFNNLP-VTPPLFAYNTLIRAYAKT-----SCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCL--------- 115 (462)
Q Consensus 51 ~~A~~~~~~~~-~~~~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--------- 115 (462)
--.+..|+..+ ...|-.+|-..+..|... +.++=....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34455666665 237888888888888654 566777788999999999999999999998875532
Q ss_pred -------CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCC
Q 012504 116 -------LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKE 151 (462)
Q Consensus 116 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (462)
+-+-+..++++|..+|+.||..+-..|++++.+.+-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 334467888888888888888888888888877654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.33 Score=42.91 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=19.9
Q ss_pred cCCChhHHHHHHHHhHHC--CCCCCHHHHHHHHHHHhcccchHhH
Q 012504 179 ACDSPSDALKVFHRMKLA--NESPNSVTLVSLVSACTSLINVRAG 221 (462)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a 221 (462)
...+.++|+..+.+-..+ +...--.++..+..+.+..|.++++
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 455666666666554432 0111112444445555555555444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.96 Score=37.84 Aligned_cols=54 Identities=4% Similarity=-0.072 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhc----CCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKL----EPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
+...|-.+.-..++ ..|+..++...+. .|++..+...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dy-v~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDY-VQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHH-HHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 33334444455556 6666666654432 345555555666555 455555555444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.93 Score=37.92 Aligned_cols=91 Identities=10% Similarity=0.025 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC--CCchhHHHH
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQT----GLKPDS-ISFSAILSACSHLGLVDEGKNYFDEMARVYNI--KPTMEHYGC 344 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ 344 (462)
......+.+..++++|-..+.+-... .-.|+. ..|...|-.+....++..|.+.++.-.+-.++ +.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 33445555556665555444332211 011222 23444445556666777777777664322122 223455666
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 012504 345 MVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~ 363 (462)
|+.+| ..|+.+++.+++.
T Consensus 234 LL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHh-ccCCHHHHHHHHc
Confidence 66665 3466666555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.1 Score=37.90 Aligned_cols=57 Identities=14% Similarity=-0.014 Sum_probs=40.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCch---HHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGAN---YVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+.+-|.+.|.+ ..|..-++.+++.-|+.+.+ +..+..+|...|..++|...-+-+..
T Consensus 173 IaryY~kr~~~-~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAY-VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcCh-HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 45567888888 88888888888776666544 44556677888888888776554443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.69 E-value=3.7 Score=45.87 Aligned_cols=315 Identities=12% Similarity=0.050 Sum_probs=174.5
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhCC--CCccchHhHHHHHHHhcCChhHHHHHHhc-CCCCChhhHHHHHHHHHcCCC
Q 012504 106 FVVKACGRCLLIGIGGSVHSLIFKVGL--DSDKYIGNTLLRMYAACKEIDVAKAVFEE-MPVRDVVSWSSMIAGFVACDS 182 (462)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 182 (462)
.+..+-.+++.+.+|...++.-..... ......+-.+...|+.-+++|....+... ...++ .+. .|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s--l~~-qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS--LYQ-QILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc--HHH-HHHHHHhhcc
Confidence 344455677888888888887411111 11122344455588999999988888774 33333 222 3334566899
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHH-HHHHHhcCChHHHHHHHh
Q 012504 183 PSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTAL-VEMYSKCGHVEKAFKVFN 261 (462)
Q Consensus 183 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~ 261 (462)
++.|...|+.+.+.+ ++...+++-++......|.+..+....+-..... .+....++.+ +.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998864 3446677777777777777777666544444332 3333333333 455577888888777766
Q ss_pred hccCCChhhHHHH--HHHHHHcCC--hHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHhhccCcHHHHHHHHHH
Q 012504 262 LMREKNLQSWTIM--ISGLADNGR--GNYAISLFAKMIQTGLKP--------D-SISFSAILSACSHLGLVDEGKNYFDE 328 (462)
Q Consensus 262 ~~~~~~~~~~~~l--~~~~~~~~~--~~~a~~~~~~m~~~~~~p--------~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 328 (462)
..+..+|... +..+.+... .-.-.+..+.+++.-+.| + ...|..++....- -+-....+.
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l----~el~~~~~~ 1615 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL----LELENSIEE 1615 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 4455555444 233333222 111222333333321111 0 0123333222111 111111111
Q ss_pred HHHhcCCCCch------hHHHHHH---HHHHhcCCHHHHH-HHHHh--CC---CCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012504 329 MARVYNIKPTM------EHYGCMV---DMLGRAGLIEEAY-HIIRN--MP---TEPNAVILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 329 ~~~~~~~~~~~------~~~~~l~---~~~~~~~~~~~A~-~~~~~--~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
+ .+..++. .-|..-+ +.+.+..++--|. +.+.. |. ...-..+|-...+.....|.+ +.|..
T Consensus 1616 l---~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~-q~A~n 1691 (2382)
T KOG0890|consen 1616 L---KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL-QRAQN 1691 (2382)
T ss_pred h---hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH-HHHHH
Confidence 1 1222221 1222222 2222222221121 11111 11 113356888888899999999 99888
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 394 LGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 394 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+-.+.+..+ +.++...+.-+...|+...|+.++++-.+.+..
T Consensus 1692 all~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1692 ALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 8877777663 458889999999999999999999998866543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.73 Score=34.45 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=84.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+.+. .+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 34567778888888777654 244556666655555555556666666664432222 2333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 358 AYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 358 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
....+-.+. .+.......+......|+. +.-..++..+.+.+..+|.....++.+|.+.|+..++-+++++.-++|+
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kk-DqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKK-DQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-H-HHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccH-HHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333333332 2344455567778888988 8888888888766666778899999999999999999999999998887
Q ss_pred c
Q 012504 438 N 438 (462)
Q Consensus 438 ~ 438 (462)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.39 E-value=2.2 Score=39.22 Aligned_cols=369 Identities=11% Similarity=0.027 Sum_probs=200.0
Q ss_pred HHhccCCCC-CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCC
Q 012504 55 SLFNNLPVT-PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLD 133 (462)
Q Consensus 55 ~~~~~~~~~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 133 (462)
++-+++... .|..+|-.||.-+...|..++..+++++|..- .+.-...|..-|++=...+++...+.+|.+.+...+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 566666654 46888999999999999999999999999753 2334556777777766678999999999999887555
Q ss_pred CccchHhHHHHHHHhcCC---------hhHHHHHHhcCC--C-CChhhHHHHHHH---HHcCCCh------hHHHHHHHH
Q 012504 134 SDKYIGNTLLRMYAACKE---------IDVAKAVFEEMP--V-RDVVSWSSMIAG---FVACDSP------SDALKVFHR 192 (462)
Q Consensus 134 ~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~--~-~~~~~~~~l~~~---~~~~~~~------~~a~~~~~~ 192 (462)
...|...++---+.+. +-+|.++.-... + .+...|+..+.- .-..|.| +...+.|.+
T Consensus 109 --ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 109 --LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred --HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 4445555543333221 122222221111 2 244455554443 2233444 456667777
Q ss_pred hHHCCCCC------CHHHHHHHHHHHh-------cccchHhHHHHHHHHHHh--C-------------------------
Q 012504 193 MKLANESP------NSVTLVSLVSACT-------SLINVRAGESIHSYAVVN--G------------------------- 232 (462)
Q Consensus 193 m~~~~~~p------~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~--~------------------------- 232 (462)
|....+.- |-..|..=++-.. ..--+..|.+.++++... |
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 76532110 0001111111000 000112223333322210 1
Q ss_pred ---------C----------------------CchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh------------
Q 012504 233 ---------L----------------------ELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ------------ 269 (462)
Q Consensus 233 ---------~----------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------ 269 (462)
+ .-...+|--.-.-+...++-+.|...........+.
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~ 346 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELV 346 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhc
Confidence 0 001111111111122344555566555543321111
Q ss_pred --------hHHHHHHHHHH---c----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 012504 270 --------SWTIMISGLAD---N----------GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDE 328 (462)
Q Consensus 270 --------~~~~l~~~~~~---~----------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 328 (462)
+|..+++.+.+ . |+++.-.+++-+-+ .-=...|...+..-.+...++.|..+|-+
T Consensus 347 nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 347 NDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred ccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 12222222211 0 11111111111100 01123455566666677788899999999
Q ss_pred HHHhcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 329 MARVYN-IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM-PTEPNAVIL-RSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 329 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~-~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
..+. + +.+++.++++++..++ .|+..-|..+|+.- ..-||...| ...+.-+...++- ..|..+|+.....-.++
T Consensus 423 ~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde-~naraLFetsv~r~~~~ 499 (660)
T COG5107 423 LRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDE-ENARALFETSVERLEKT 499 (660)
T ss_pred Hhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcH-HHHHHHHHHhHHHHHHh
Confidence 9876 5 6778888888887665 57888899998874 434666555 3455566778888 88999999665422222
Q ss_pred --CchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 406 --GANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 406 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
..+|..++.--..-|+...+..+=+.|.
T Consensus 500 q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 500 QLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred hhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 3477788877777888877766555553
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.93 Score=34.69 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 012504 389 YLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 389 ~~a~~~~~~~~~~~p~~~ 406 (462)
..|...|+.+++.-|++.
T Consensus 116 ~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 116 RQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHCcCCh
Confidence 567777788888888764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.31 Score=36.71 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh-CCCchHhHHHHHHHH
Q 012504 198 ESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN-GLELDVALGTALVEM 246 (462)
Q Consensus 198 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 246 (462)
..|+..+..+++.+++..|++..|.++.+...+. +++.+..+|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4566666666666666666666666666665543 444455566555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.22 Score=42.42 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=82.3
Q ss_pred HHHHHHhcCC--CCChhhHHHHHHHHHc-----CCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc----------
Q 012504 154 VAKAVFEEMP--VRDVVSWSSMIAGFVA-----CDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI---------- 216 (462)
Q Consensus 154 ~A~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---------- 216 (462)
..++.|.... ++|..+|...+..+.. .+.++-....++.|++-|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455566665 5577777777776643 3566777777888999999999999999998875432
Q ss_pred ------chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCh-HHHHHHHhhcc
Q 012504 217 ------NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHV-EKAFKVFNLMR 264 (462)
Q Consensus 217 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 264 (462)
+-+-+..++++|...|+-||..+-..|++++.+.+.. .+..++.-.|.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 3355789999999999999999999999999887763 33444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.87 Score=42.87 Aligned_cols=158 Identities=13% Similarity=0.074 Sum_probs=84.2
Q ss_pred HHHcCCChhHHHHHHH--HhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCh
Q 012504 176 GFVACDSPSDALKVFH--RMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHV 253 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 253 (462)
...-.++++.+.++.. ++.. .+ | ..-...++..+.+.|-.+.|.++... +. .-.+...++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 3344566666665554 1111 11 1 33355566666666777666665322 11 123445677777
Q ss_pred HHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc
Q 012504 254 EKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVY 333 (462)
Q Consensus 254 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 333 (462)
+.|.++.++.. +...|..|.......|+++-|.+.|.+..+ +..|+-.|...|+.+.-.++.+.....
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 77777765544 455777777777777887777777766442 344444556666666666665555442
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 334 NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
| -++....++.-.|+.++..+++.+..
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 24444455556677777777777665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.9 Score=37.34 Aligned_cols=146 Identities=13% Similarity=0.071 Sum_probs=74.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCH
Q 012504 276 SGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLI 355 (462)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (462)
......|++.+|...|+........ +...-..+..+|...|+.+.|..++..+... --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3445566777777777666654222 2344455566667777777777777665432 1011111111223333444333
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc--CCCCCchHHHHHHHHhhcCCHHH
Q 012504 356 EEAYHIIRNMPTEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKL--EPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 356 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
.+...+-.+....| |...-..+...+...|+. +.|...+-.+.+. +-.+..+-..++..+...|.-+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~-e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRN-EAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 33333333333333 455555566667777777 5555554444432 33444566666666666554443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.10 E-value=2.4 Score=38.84 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC----CCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 369 PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEP----ELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
....+|..+...+.+.|.+ +.|...+.++.+..+ ..+.+...-+..+...|+..+|+..++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~-~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNF-QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCc-HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788889999999999 999999999887542 24567777888889999999999999888773
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.2 Score=34.45 Aligned_cols=126 Identities=8% Similarity=0.010 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (462)
...++..+...+.+.....+++.+...+. .+....+.++..|++.+ .......++. .++.......++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 34455566666666777777776666552 45556666666666542 2333333331 112222334555666
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 012504 351 RAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNH-GQVLYLDDNLGKLLLKLEPELGANYVLAASVSS 417 (462)
Q Consensus 351 ~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 417 (462)
+.+.++++.-++.++.. +...+..+... ++. +.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~-~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNY-EKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCH-HHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 66666677776666652 11122333333 566 666666553 234445555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.047 Score=32.27 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=29.8
Q ss_pred CchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 406 GANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
|.++..++.+|.+.|++++|+++|++..+..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3578899999999999999999999999877643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.091 Score=28.74 Aligned_cols=31 Identities=16% Similarity=0.012 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
.|..+...+...|++ ++|+..++++.++.|+
T Consensus 3 ~~~~lg~~~~~~~~~-~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNY-EEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-H-HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHHHHCcC
Confidence 344455556666666 6666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.93 E-value=4.5 Score=40.33 Aligned_cols=175 Identities=14% Similarity=0.050 Sum_probs=112.9
Q ss_pred HhHHHHHHHhcCChhHHHHHHhcCCCCCh---hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc
Q 012504 139 GNTLLRMYAACKEIDVAKAVFEEMPVRDV---VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSL 215 (462)
Q Consensus 139 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 215 (462)
...-++...+...++-|+.+-+.-..+.. ........-+.+.|++++|...|-+-... +.|.. ++.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCH
Confidence 34556666777777777777666543321 12333344566788999998888765443 23322 34445566
Q ss_pred cchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh--hHHHHHHHHHHcCChHHHHHHHHH
Q 012504 216 INVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ--SWTIMISGLADNGRGNYAISLFAK 293 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 293 (462)
.....-..+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+... .+.. -....+..+.+.+-.++|..+-.+
T Consensus 411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 667777778888888884 455566778999999999998888888776 3332 245566777777777777766554
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 012504 294 MIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 294 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
... +......++ ...+++++|.++++.+
T Consensus 489 ~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 332 334444444 4667888888888766
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=1 Score=39.47 Aligned_cols=155 Identities=11% Similarity=0.010 Sum_probs=88.8
Q ss_pred HhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHH--HHHHhhccCcHH
Q 012504 248 SKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI--SFSA--ILSACSHLGLVD 320 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~--ll~~~~~~~~~~ 320 (462)
...|+..+|...++++.+ .|..++.--=.++...|+.+.-...+++.... ..|+.. +|.. ..-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 344666666666666654 35566666667777777777777777777654 233332 2322 223344667777
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCChHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPN------AVILRSFLGACRNHGQVLYLDDNL 394 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~a~~~ 394 (462)
+|++.-++..+- -+.|.-.-.+....+.-.|++.++.++..+-...-+ ...|....-.+...+.+ +.|+.+
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey-e~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY-EKALEI 269 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch-hHHHHH
Confidence 787777766532 122344445566666677778888777776643211 11222222334455667 777777
Q ss_pred HHHHH--hcCCCCC
Q 012504 395 GKLLL--KLEPELG 406 (462)
Q Consensus 395 ~~~~~--~~~p~~~ 406 (462)
|+.-. +++.+|.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 76633 4555555
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.43 Score=44.01 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=54.7
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH----HHHHHHHHHHhcccchHhHHHHHHHHHHh
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNS----VTLVSLVSACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999998874 4654 35888999999999999999999998875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.84 E-value=2.1 Score=36.05 Aligned_cols=199 Identities=16% Similarity=0.082 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHh-CCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC--Ch-hhHHHHHH-H
Q 012504 203 VTLVSLVSACTSLINVRAGESIHSYAVVN-GLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK--NL-QSWTIMIS-G 277 (462)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~-~ 277 (462)
..+......+...+++..+...+...... ........+......+...+++..+.+.+...... +. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444455555555555555555554432 22333444444455555555555555555554431 11 11222222 4
Q ss_pred HHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCC
Q 012504 278 LADNGRGNYAISLFAKMIQTGL--KPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 354 (462)
+...|+++.+...+.+...... ......+......+...++.+.+...+...... .+. ....+..+...+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 5555555555555555533111 011122222222233445555555555555432 122 23444444445555555
Q ss_pred HHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 355 IEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 355 ~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
++.|...+..... .|+ ...+..+...+...+.. +.+...+.+..+..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRY-EEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCH-HHHHHHHHHHHHhCcc
Confidence 5555555544422 122 22333333333333444 5555555555554443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.75 E-value=3.9 Score=39.17 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHHCC-CCCCH-----HHHHHHHHHHhc----ccchHhHHHHHHHHHHhCCCchHhH
Q 012504 170 WSSMIAGFVACDSPSDALKVFHRMKLAN-ESPNS-----VTLVSLVSACTS----LINVRAGESIHSYAVVNGLELDVAL 239 (462)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 239 (462)
...+++...-.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ..+.+.+.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3344455555677777777777654432 21111 123333333332 34566777777777765 345444
Q ss_pred HH-HHHHHHHhcCChHHHHHHHhhccCC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 240 GT-ALVEMYSKCGHVEKAFKVFNLMREK-------NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 240 ~~-~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
|. .-.+.+...|++++|++.|++.... ....+--+.-.+....++++|.+.|..+.+.+ ..+..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 43 2355666777778887777765431 11233344455666677777777777777652 223334433333
Q ss_pred H-hhccCcH-------HHHHHHHHHHH
Q 012504 312 A-CSHLGLV-------DEGKNYFDEMA 330 (462)
Q Consensus 312 ~-~~~~~~~-------~~a~~~~~~~~ 330 (462)
+ +...++. ++|..+|.++.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 2 2334555 66666666654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.58 E-value=3.1 Score=36.88 Aligned_cols=68 Identities=9% Similarity=-0.033 Sum_probs=39.2
Q ss_pred hHHHHHHHHhHHCCCCCCHH--HHHHHHHHHhcccc--hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 012504 184 SDALKVFHRMKLANESPNSV--TLVSLVSACTSLIN--VRAGESIHSYAVVNGLELDVALGTALVEMYSKCG 251 (462)
Q Consensus 184 ~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (462)
+.+..+|+.+...|+..+.. ..+.++..+....+ ...+..+++.+.+.|+++....|..++-...-.+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLED 231 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCC
Confidence 45667777777766655332 33333333322222 3467778888888888877777766654443333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.57 E-value=1.6 Score=33.65 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHH
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRM 145 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (462)
......++..+...+.+......++.+...|. .+...++.++..+++.+ ..+....+.. ..+......+++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 33455667777767777777777777776653 46666777777776543 2222233321 1222333445556
Q ss_pred HHhcCChhHHHHHHhcCC
Q 012504 146 YAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 146 ~~~~~~~~~A~~~~~~~~ 163 (462)
|.+.+-++++.-++.++.
T Consensus 79 c~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 79 CEKAKLYEEAVELYKKDG 96 (140)
T ss_pred HHHcCcHHHHHHHHHhhc
Confidence 666666666665555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.55 E-value=3.7 Score=37.62 Aligned_cols=148 Identities=12% Similarity=-0.005 Sum_probs=78.9
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhH
Q 012504 267 NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP---DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT--MEH 341 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 341 (462)
...+|..+++.+.+.|+++.|...+.++...+..+ .+.....-.......|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44678888888889999999998888887643211 2223333344456678888888888877762 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 342 YGCMVDMLGRAGLIEEAYHII-RNMPTEPNAVILRSFLGACRNH------GQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
...+...+.. ..+.....- .......-...+..+..-+... +.. +.+...|..+.+..|.....+..++.
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESS-DEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccH-HHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 1111111100 000000000 0000000112222233323333 667 88888889999888888888888777
Q ss_pred HHhh
Q 012504 415 VSSL 418 (462)
Q Consensus 415 ~~~~ 418 (462)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 7654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.38 Score=35.78 Aligned_cols=103 Identities=13% Similarity=-0.007 Sum_probs=66.1
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCC-H---HHHHHHHHHHHHcC
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPN-A---VILRSFLGACRNHG 385 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~---~~~~~l~~~~~~~~ 385 (462)
+....|+++.|++.|.+... -.+.....||.-.+++.-.|+.++|++-+++... .+. . ..|..=...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45677888888888887764 3344577888888888888888888877776532 111 1 12222233466778
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSS 417 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 417 (462)
+. +.|..-|+.+.+++..-..-....++-|.
T Consensus 130 ~d-d~AR~DFe~AA~LGS~FAr~QLV~lNPYA 160 (175)
T KOG4555|consen 130 ND-DAARADFEAAAQLGSKFAREQLVELNPYA 160 (175)
T ss_pred ch-HHHHHhHHHHHHhCCHHHHHHHHhcChHH
Confidence 88 88888888888776554433333444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.1 Score=39.60 Aligned_cols=138 Identities=7% Similarity=0.090 Sum_probs=88.7
Q ss_pred HHHHHHHhhcC-h----hHHHHHHHHHHHhCCCCchhhhhhHh-hhhh-c-----CCHHHHHHHhccCCCC------CCc
Q 012504 5 HIETLIQLSKT-V----HHLHQLHTLFLKTSLDHNTCIISRFI-LTSL-S-----ISLHFTRSLFNNLPVT------PPL 66 (462)
Q Consensus 5 ~~~~~l~~~~~-~----~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~-~-----~~~~~A~~~~~~~~~~------~~~ 66 (462)
.++++|...+. + +....+++.|.+.|++.+..++-+.. +... . .....|..+++.|... ++-
T Consensus 62 ~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 62 ILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 45666666665 4 55588999999999999887776644 2221 0 1677888889888643 555
Q ss_pred ccHHHHHHHHHhCCCc----hhHHHHHHHHHHCCCCCCcc--hHHHHHHHhhhhcC--chhHHHHHHHHHHhCCCCccch
Q 012504 67 FAYNTLIRAYAKTSCS----IESIKLFDEMLKTGLRPDNF--TYPFVVKACGRCLL--IGIGGSVHSLIFKVGLDSDKYI 138 (462)
Q Consensus 67 ~~y~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 138 (462)
..+..++.. ..+++ +.+..+|+.+.+.|+..+.. ....++..+..... ..++..+++.+.+.|+++....
T Consensus 142 ~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 142 YPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred hhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 566666655 33333 45667888888878765543 33333333322222 4577888888888888877776
Q ss_pred HhHHHH
Q 012504 139 GNTLLR 144 (462)
Q Consensus 139 ~~~l~~ 144 (462)
|..+.-
T Consensus 220 yp~lGl 225 (297)
T PF13170_consen 220 YPTLGL 225 (297)
T ss_pred ccHHHH
Confidence 665443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.099 Score=28.67 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
+|..+...+...|++ +.|...++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDY-EEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-H-HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCc-hHHHHHHHHHHHHCcC
Confidence 444555555555555 5555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.5 Score=41.35 Aligned_cols=159 Identities=13% Similarity=0.028 Sum_probs=116.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHH----HHHHHHHhcCC
Q 012504 279 ADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYG----CMVDMLGRAGL 354 (462)
Q Consensus 279 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~ 354 (462)
--.|++.+|...++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4568888999999999886 455677777777889999999999999998876 3355543333 33344568999
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC----CchHHHHHHHHhhcCCHHHHHHH
Q 012504 355 IEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL----GANYVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 355 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~ 428 (462)
+++|++.-++... +.|.-.-.++...+--.|+. +++.++..+-...-... ...|-..+-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~-Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH-KEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh-hhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999988743 44556667777888889999 99988887766543322 23466778888899999999999
Q ss_pred HHHHhcCCCccCC
Q 012504 429 MVAINQKGLNKVP 441 (462)
Q Consensus 429 ~~~~~~~~~~~~~ 441 (462)
|+.-+-+....+.
T Consensus 270 yD~ei~k~l~k~D 282 (491)
T KOG2610|consen 270 YDREIWKRLEKDD 282 (491)
T ss_pred HHHHHHHHhhccc
Confidence 9866544444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.33 E-value=4.2 Score=38.08 Aligned_cols=58 Identities=9% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
.+..++.+.|+.++|.+.++++.+.+....+..+...|+.++...+++.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444455666666666666666654222223445556666666666666666666554
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.17 E-value=3.2 Score=35.29 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=112.7
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccCCC------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMREKN------LQSWTIMISGLADNGRGNYAISLFAKMIQTG-LKPDSISFS 307 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~ 307 (462)
|-...|+. +..-.+.|++++|.+.|+.+.... ..+.-.++.++.+.+++++|+..+++..... -.||. -|.
T Consensus 33 p~~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 33 PASELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 44455554 444567899999999999998532 2456667788899999999999999998763 33443 343
Q ss_pred HHHHHhhc-------cCc---HHHHHHHHHHHHHhcC---CCCchhHH------------HHHHHHHHhcCCHHHHHHHH
Q 012504 308 AILSACSH-------LGL---VDEGKNYFDEMARVYN---IKPTMEHY------------GCMVDMLGRAGLIEEAYHII 362 (462)
Q Consensus 308 ~ll~~~~~-------~~~---~~~a~~~~~~~~~~~~---~~~~~~~~------------~~l~~~~~~~~~~~~A~~~~ 362 (462)
..|.+.+. ..+ ...|..-|+.++.++. ..||...- ..+.+-|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 34443332 123 3456666667766431 11222111 23456788999999998888
Q ss_pred HhCCCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 363 RNMPTE-----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 363 ~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++|.+. -....+-.+..+|...|-. ++|...-.-+....|+++
T Consensus 191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~-~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 191 EEVLENYPDTSAVREALARLEEAYYALGLT-DEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhCCh-HHHHHHHHHHHhcCCCCc
Confidence 888542 2234566678899999999 999888776666666665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.28 Score=42.39 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
++..++..+...|+++.+.+.+++... +-+...|..++.+|.+.|+. ..|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~-~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQ-SAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCc-hHHHHHHHHHHH
Confidence 445555555555555555555555422 23445555555555555555 555555555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=3.1 Score=34.92 Aligned_cols=196 Identities=17% Similarity=0.137 Sum_probs=114.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE-----KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
...+......+...+.+..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 44555566666666777766666665432 2334555556666666667777777777665433321 11222222
Q ss_pred -HhhccCcHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-C-CHHHHHHHHHHHHHcC
Q 012504 312 -ACSHLGLVDEGKNYFDEMARVYNI--KPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-E-P-NAVILRSFLGACRNHG 385 (462)
Q Consensus 312 -~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~-~~~~~~~l~~~~~~~~ 385 (462)
.+...|+++.+...+.+.... .. ......+......+...++.+.+...+..... . . ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 566677777777777776431 11 11233344444445666777777777766533 2 2 2455666666677777
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
+. ..+...+.......|.....+..+...+...|.++++...+....+.
T Consensus 217 ~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KY-EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cH-HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77 77777777777777664445555555555556677777766665543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.04 E-value=2.6 Score=39.44 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNMPT-EP---NAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
.+..+..+.|+.++|++.++++.+ .| ...+...|+.++...+.+ .++..++.+-.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y-ad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY-ADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH-HHHHHHHHHhcc
Confidence 344555556666666666666532 12 223445566666666666 666666655443
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=4.9 Score=37.46 Aligned_cols=139 Identities=12% Similarity=0.089 Sum_probs=85.5
Q ss_pred hHHHHHHHhhcc---CCC---hhhHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 012504 253 VEKAFKVFNLMR---EKN---LQSWTIMISGLADN---------GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG 317 (462)
Q Consensus 253 ~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 317 (462)
.+.|..+|.+.. +-+ ...|..+..++... ....+|.++-++..+.+ +-|+.....+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 567788888877 434 34455544443321 23345666777777664 336777777777677777
Q ss_pred cHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHHcCChHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNM-PTEPNA---VILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~~~~a~ 392 (462)
+++.|...|++.. .+.|| ...|........-+|+.++|.+.+++. .-.|.. .+....+..|..++ . +.+.
T Consensus 353 ~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~-~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-L-KNNI 427 (458)
T ss_pred chhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-h-hhhH
Confidence 8999999998887 45666 555555555666788999999988884 434442 22222333454443 4 5556
Q ss_pred HHHHH
Q 012504 393 NLGKL 397 (462)
Q Consensus 393 ~~~~~ 397 (462)
.++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 65543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.12 Score=28.91 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=21.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 408 NYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.76 E-value=2.3 Score=34.43 Aligned_cols=95 Identities=8% Similarity=0.053 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCch------hH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS--ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTM------EH 341 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 341 (462)
.+..+...|++.|+.+.|.+.|.++.+....|.. ..+-.+++.....+++..+.....+.........+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666666666666666666666665433332 244555566666666666666666654431111111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
|..+ .+...+++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2334677888777776653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.4 Score=34.49 Aligned_cols=24 Identities=4% Similarity=-0.126 Sum_probs=17.4
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
...+++ ..|+.+|+++.+..-+++
T Consensus 165 a~leqY-~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQY-SKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHH-HHHHHHHHHHHHHhccch
Confidence 466777 888888888877655554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.72 E-value=8.3 Score=38.59 Aligned_cols=133 Identities=9% Similarity=0.051 Sum_probs=76.8
Q ss_pred CHHHHHHHhcc-CCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHH
Q 012504 49 SLHFTRSLFNN-LPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLI 127 (462)
Q Consensus 49 ~~~~A~~~~~~-~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (462)
++++|...+-+ ++.. -=..+|.-|........--..++.+.+.|+. +...-..|+.+|.+.++.++-.++.+..
T Consensus 383 df~~A~~qYI~tI~~l----e~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 383 DFDEATDQYIETIGFL----EPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred CHHHHHHHHHHHcccC----ChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 67777665533 3221 1123556666666666677777777777765 5555667777788877777766655433
Q ss_pred HHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHh
Q 012504 128 FKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRM 193 (462)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 193 (462)
- .|.. ..-....+..+-+.+-.++|.-+-.+... +......++. ..+++++|++.+..+
T Consensus 458 ~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 458 D-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred C-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 2 1110 11134455566666666666655555443 3334444433 467788888888776
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.56 E-value=11 Score=39.43 Aligned_cols=53 Identities=17% Similarity=0.038 Sum_probs=23.4
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
+.+|...|++.+|..+..++.. .-+ ..+-..|+.-+...+++-+|-+++.+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 3444445555555554444421 111 1112344444555555555555555543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.67 Score=36.21 Aligned_cols=81 Identities=17% Similarity=0.137 Sum_probs=54.5
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHH
Q 012504 340 EHYGCMVDML---GRAGLIEEAYHIIRNMPT-EP---NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLA 412 (462)
Q Consensus 340 ~~~~~l~~~~---~~~~~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 412 (462)
.+...|+..+ .+.++.+++..++..+.. +| ...++... .+...|++ .+|.++++.+.+..|..+..-..+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w-~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDW-DDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCH-HHHHHHHHHHhccCCCChHHHHHH
Confidence 3444454443 467788888888887733 33 34444433 47788899 999999999888888777666666
Q ss_pred HHHHhhcCCHH
Q 012504 413 ASVSSLSGNWD 423 (462)
Q Consensus 413 ~~~~~~~g~~~ 423 (462)
+.++...|+.+
T Consensus 85 A~CL~~~~D~~ 95 (160)
T PF09613_consen 85 ALCLYALGDPS 95 (160)
T ss_pred HHHHHHcCChH
Confidence 76776666543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.53 E-value=7.3 Score=37.34 Aligned_cols=82 Identities=10% Similarity=-0.000 Sum_probs=36.9
Q ss_pred hhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHH-hcCChhHHHHHHhcCCC------CChhhHHHHHHHHHcCCChhH
Q 012504 113 RCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYA-ACKEIDVAKAVFEEMPV------RDVVSWSSMIAGFVACDSPSD 185 (462)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~ 185 (462)
+.|..+.+.++|+..+.. ++.+...|...+..+. ..|+.+...+.|+.... .+...|...|.--..++++..
T Consensus 91 klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 344455555555554433 2333333333333222 23444444444444431 133345555554455555566
Q ss_pred HHHHHHHhHH
Q 012504 186 ALKVFHRMKL 195 (462)
Q Consensus 186 a~~~~~~m~~ 195 (462)
...+|++.++
T Consensus 170 v~~iyeRile 179 (577)
T KOG1258|consen 170 VANIYERILE 179 (577)
T ss_pred HHHHHHHHHh
Confidence 6666655554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=1.7 Score=34.29 Aligned_cols=51 Identities=10% Similarity=0.022 Sum_probs=23.5
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 349 LGRAGLIEEAYHIIRNMPTEPN---AVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
+...|.+++...-.+.+..+.+ ...-..|.-+-.+.|++ ..|...|+.+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~-a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF-AKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch-HHHHHHHHHHHc
Confidence 3445555555555554432211 12223344444555555 555555555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.32 Score=39.17 Aligned_cols=103 Identities=15% Similarity=0.011 Sum_probs=66.0
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHHcCC
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN-AVILRSFLGACRNHGQ 386 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~ 386 (462)
-+...|++++|..-|...+......+. ...|..-.-++.+.+.++.|++-...... .|. ......-..+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 456789999999999888864222221 23344445567788888888877766542 221 1222222346777778
Q ss_pred hHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012504 387 VLYLDDNLGKLLLKLEPELGANYVLAASV 415 (462)
Q Consensus 387 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 415 (462)
+ +.|..-+.++++..|.........++.
T Consensus 184 ~-eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 184 Y-EEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred H-HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 8 889999999999888766555444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.76 Score=35.27 Aligned_cols=69 Identities=13% Similarity=0.048 Sum_probs=40.1
Q ss_pred hcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCH
Q 012504 351 RAGLIEEAYHIIRNMPT----EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNW 422 (462)
Q Consensus 351 ~~~~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 422 (462)
..++++++..+++.+.. .+...++...+ +...|++ .+|.++++.+.+..+..+-.-..++.++...|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w-~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNY-DEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCH-HHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 46667777777766632 23344443333 5667777 7777777777766655554444555555555553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.85 Score=34.00 Aligned_cols=90 Identities=12% Similarity=0.054 Sum_probs=60.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhc
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGCMVDMLGRA 352 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 352 (462)
.-++...|+.+.|++.|.+.... .+-....|+.-..++.-+|+.++|..-+++..+..|-... -..|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34567778888888888887765 2335667888888888888888888888777765333211 12233334456667
Q ss_pred CCHHHHHHHHHhC
Q 012504 353 GLIEEAYHIIRNM 365 (462)
Q Consensus 353 ~~~~~A~~~~~~~ 365 (462)
|+-+.|..-|+..
T Consensus 129 g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 129 GNDDAARADFEAA 141 (175)
T ss_pred CchHHHHHhHHHH
Confidence 7777777777665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.13 E-value=5.8 Score=35.00 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=11.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhcc
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
.-++++.+.++.+.+.+.+.+|.
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHH
Confidence 33444444555555555555554
|
It is also involved in sporulation []. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.22 Score=38.75 Aligned_cols=128 Identities=11% Similarity=0.086 Sum_probs=68.7
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCC
Q 012504 72 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKE 151 (462)
Q Consensus 72 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (462)
++..+.+.+.+......++.+...+..-+....+.++..|++.++.++...+++ ..+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 456666667777777777777765545556666777777777766666666555 1122333455666666666
Q ss_pred hhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc
Q 012504 152 IDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN 217 (462)
Q Consensus 152 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 217 (462)
+++|.-++.++...+.. +..+...++++.|.++..+ .++...|..++..|...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 66666665554421110 0012223344444422221 2456777777777766554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.88 E-value=9.2 Score=36.70 Aligned_cols=181 Identities=14% Similarity=0.123 Sum_probs=117.9
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN---LQSWTIMISGLADNGRGNYAISLFAKMIQTGLK--PDSISFSA 308 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ 308 (462)
+++..+|...+..-.+.|+.+.+.-+|++..-|- ...|-..+.-....|+.+-|..++....+--++ |....+.+
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 3456788888888888999999999998887552 345555555555568888888777666554322 22223333
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHH---HHHHhCCC-CCCHHH----HHHHHH
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAY---HIIRNMPT-EPNAVI----LRSFLG 379 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~-~~~~~~----~~~l~~ 379 (462)
.+ +...|+++.|..+++.+..+ . |+ ...-..-+....+.|..+.+. +++..... +-+..+ +....+
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFAR 448 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHH
Confidence 22 44568999999999999874 3 55 233333344556778888777 55544422 112222 222222
Q ss_pred -HHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 012504 380 -ACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG 420 (462)
Q Consensus 380 -~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 420 (462)
.+.-.++. +.|..++.++.+..|++-..|..++......+
T Consensus 449 ~~~~i~~d~-~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDA-DLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCH-HHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 24456777 89999999999999998888888887776554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.77 E-value=2.1 Score=33.83 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=22.5
Q ss_pred HhcCChHHHHHHHhhccCC-Ch---hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 248 SKCGHVEKAFKVFNLMREK-NL---QSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
...|-+++...-.+-+..+ ++ ..-..|.-+-.+.|++.+|.++|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445555555444444322 11 2233344444455555555555555544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.13 Score=28.05 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=26.0
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
..+..++.++...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3678899999999999999999999876554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.56 E-value=3.2 Score=37.02 Aligned_cols=219 Identities=14% Similarity=0.116 Sum_probs=122.0
Q ss_pred HhcCChhHHHHHHhcCCCC------ChhhHHHHHHHHHcCCChhHHHHHHHHhHHC--CCCCCH---HHHHHHHHHHhcc
Q 012504 147 AACKEIDVAKAVFEEMPVR------DVVSWSSMIAGFVACDSPSDALKVFHRMKLA--NESPNS---VTLVSLVSACTSL 215 (462)
Q Consensus 147 ~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~---~~~~~l~~~~~~~ 215 (462)
....+.++|+..+.....+ --.++..+..+....|.+++++..--.-... ...... ..|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777766655433 1224555556666777776665442221110 011111 2344444444444
Q ss_pred cchHhHHHHHHHHHHh-CCCc---hHhHHHHHHHHHHhcCChHHHHHHHhhccC-----C----ChhhHHHHHHHHHHcC
Q 012504 216 INVRAGESIHSYAVVN-GLEL---DVALGTALVEMYSKCGHVEKAFKVFNLMRE-----K----NLQSWTIMISGLADNG 282 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~ 282 (462)
.++.+++.+-..-... |..+ .......+..++...+.++++++.|+...+ . ...++-.|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555544433322 2122 123445577778888888888888887653 1 2357788888888888
Q ss_pred ChHHHHHHHHHHHHC----CCCCCHHHHHH-----HHHHhhccCcHHHHHHHHHHHHHhc---CCCCc-hhHHHHHHHHH
Q 012504 283 RGNYAISLFAKMIQT----GLKPDSISFSA-----ILSACSHLGLVDEGKNYFDEMARVY---NIKPT-MEHYGCMVDML 349 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~----~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~ 349 (462)
++++|.-+..+..+. ++.--...|.. +.-++...|.+..|.+.-++..+.- |-.+. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 888888777666542 22211112322 3335566777777777776665431 22221 33445677778
Q ss_pred HhcCCHHHHHHHHHhC
Q 012504 350 GRAGLIEEAYHIIRNM 365 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~ 365 (462)
...|+.+.|..-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 8888888888777664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.53 E-value=4.2 Score=31.90 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=59.4
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHY-GCMVDMLGRAGLIEEAYHIIRNMPTE-PNAVILRSFLGACRNHGQVLYL 390 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~ 390 (462)
-...++.+++..++..+. -+.|..... ..-...+...|+|.+|..+|+++... |....-..|+..|....+- ..
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D-~~ 95 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD-PS 95 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC-hH
Confidence 346678888888888886 345553222 22234567788888888888888653 4444445555555443333 23
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHH
Q 012504 391 DDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAE 427 (462)
Q Consensus 391 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 427 (462)
=..+-+++.+..++ +.+ ..++..+....+...|..
T Consensus 96 Wr~~A~evle~~~d-~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGAD-PDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCCC-hHH-HHHHHHHHHhccccchhh
Confidence 34444445554443 322 334444444444444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.45 E-value=4.6 Score=32.72 Aligned_cols=131 Identities=10% Similarity=0.023 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSA--ILSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGC 344 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 344 (462)
..|..++.... .+.+ +......++...+....-..+.. +...+...+++++|+..++..... ....+ ...--.
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lR 131 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHH
Confidence 34555555443 3333 44455555555421211112222 223456667777777777766532 11111 111223
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPTEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
|.+.....|.+++|+..++....+. .......-...+...|+. ++|+..|+++++..+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k-~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK-QEARAAYEKALESDA 190 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch-HHHHHHHHHHHHccC
Confidence 4455666777777777777665331 122222334566777777 777777777776653
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.16 Score=27.80 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=26.4
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.+|..++.+|...|++++|+..+++..+.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688999999999999999999999887654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.22 E-value=4.9 Score=31.95 Aligned_cols=135 Identities=11% Similarity=-0.017 Sum_probs=69.7
Q ss_pred HHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC
Q 012504 187 LKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK 266 (462)
Q Consensus 187 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 266 (462)
.++++.+.+.+++|+...+..+++.+.+.|++.. +.++...++-+|.......+-.+. +.+..+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 3455556667777888888888888877777554 334444454444443333322222 1222233332233222
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 267 NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
=...+..++..+...|++-+|.++.+..... +......++.+....+|...-..+++-...
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2224455566777778777777776654222 111223455555555555554444444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.41 Score=26.69 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKM 294 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m 294 (462)
|..|...|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666653
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.4 Score=26.10 Aligned_cols=29 Identities=14% Similarity=0.019 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
|..+...|...|+. +.|...|+++.++.|
T Consensus 4 ~~~lg~~y~~~~~~-~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDY-EEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHhhCC
Confidence 33444445555555 555555555554444
|
... |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.6 Score=37.86 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=52.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQ-----TGLKPDSISFSA 308 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 308 (462)
..++..++..+...|+++.+.+.++++... +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566777777778888888777777653 446778888888888888888877777654 366666665555
Q ss_pred HHHH
Q 012504 309 ILSA 312 (462)
Q Consensus 309 ll~~ 312 (462)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.18 Score=27.21 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=17.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 409 YVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
+..++.++.+.|++++|.++|+++++..
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4456666666666677766666665543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.27 Score=25.04 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=19.5
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHH
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMV 430 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~ 430 (462)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888889999999988875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.61 E-value=20 Score=37.66 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCcHH
Q 012504 243 LVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI--SFSAILSACSHLGLVD 320 (462)
Q Consensus 243 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~ 320 (462)
..+.+...+.+++|.-.|+..-+ ....+.+|..+|+|.+|+.+..++... -+.. +-..|..-+...++.-
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 33334455556666555554332 122356666777777777766655321 1221 1145566677788888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
+|-++..+.... ....+..|++...|++|..+.....
T Consensus 1017 eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 888888777642 2334556778888999988887765
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.6 Score=30.58 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 283 RGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44566677777777788899999999999999999999999999988754332 4445655554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=9.9 Score=33.51 Aligned_cols=17 Identities=0% Similarity=-0.310 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHhhccCc
Q 012504 302 DSISFSAILSACSHLGL 318 (462)
Q Consensus 302 ~~~~~~~ll~~~~~~~~ 318 (462)
+...-...+.++.+.++
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33333334444444444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.04 E-value=7.9 Score=32.03 Aligned_cols=179 Identities=14% Similarity=0.025 Sum_probs=99.3
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChh-hHHHH--HHHHHHcCChHHHHHHH
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQ-SWTIM--ISGLADNGRGNYAISLF 291 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~~a~~~~ 291 (462)
.|-+.-|.-=|.+..... |.-+.+||.+.--+...|+++.|.+.|+...+-|+. -|..+ .-++--.|++.-|.+-|
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 344444444444444433 334678888888889999999999999988875542 23222 22334568888888877
Q ss_pred HHHHHCCCC-CCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHH-HHHHHHhcCCHHHHHHHHHhCCCC-
Q 012504 292 AKMIQTGLK-PDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGC-MVDMLGRAGLIEEAYHIIRNMPTE- 368 (462)
Q Consensus 292 ~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~- 368 (462)
...-..... |=...|.-+. ...-++.+|..-+.+--+ +. +..-|.. ++..|.-.=..+.+.+-...-...
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~--~~--d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE--KS--DKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH--hc--cHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 777665322 2122232222 233456666554433222 22 3233332 223332221222222222222111
Q ss_pred -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 012504 369 -----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 369 -----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~ 402 (462)
.-..+|--|..-+...|+. +.|..+|+-+...+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~-~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDL-DEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHh
Confidence 1235777788889999999 99999999888754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.94 E-value=3.1 Score=33.68 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=31.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH--HHHHHHHHHHhcccchHhHHHHHHHHH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKLANESPNS--VTLVSLVSACTSLINVRAGESIHSYAV 229 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~ 229 (462)
.+..+...|.+.|+.+.|++.|.++......+.. ..+..+++.+.-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445555555666666666666665554332222 234445555555555555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.94 E-value=4.7 Score=37.42 Aligned_cols=119 Identities=14% Similarity=0.079 Sum_probs=62.1
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~ 392 (462)
..|+.-.|.+-+....+.+.-.|+... .....+...|+++.+...+..... .....+..++++.....|++ +.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~-~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARW-REAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhH-HHHH
Confidence 345555554444444442233333222 222334556666666666655432 12345555666666666666 6666
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 393 NLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
...+.++..+-.++.+....+-.-...|-++++...|+.+...+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 66666666555555444443333444566666666666665444
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=90.66 E-value=11 Score=32.90 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=29.4
Q ss_pred CCccchHhHHHHHHHhcCChhHHHHHHhcCCC-----CChhhHHHHHHHHHcCCChhHHHHHH
Q 012504 133 DSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV-----RDVVSWSSMIAGFVACDSPSDALKVF 190 (462)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~ 190 (462)
.++..+...++..+++.+++.+-.++++.... .|...|..+|..-...|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444445555555555555555555544431 24455555555555555554444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.5 Score=31.14 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 285 NYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
-+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+. ....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHHH
Confidence 356666677777778899999999999999999999999999998875443 33367666543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=20 Score=35.93 Aligned_cols=333 Identities=10% Similarity=-0.048 Sum_probs=161.0
Q ss_pred CHHHHHHHhccCCCCCCcccHHH-HHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHH
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNT-LIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLI 127 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 127 (462)
..++...++++.+..|-...... -+..+.+.+++...+..+.. .+.+...-.....+....|+.++|....+.+
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67777777787776554444332 34455667777766663311 2234444456667777778877676665555
Q ss_pred HHhCCCCccchHhHHHHHHHhcCChhH------------------HHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHH
Q 012504 128 FKVGLDSDKYIGNTLLRMYAACKEIDV------------------AKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKV 189 (462)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 189 (462)
-..| ...+..++.++..+.+.|.+.. |..+...+..........++..+ .+...+...
T Consensus 156 W~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~ 231 (644)
T PRK11619 156 WLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETF 231 (644)
T ss_pred hccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHH
Confidence 5444 3345566777777776555433 22222222111011111111111 111222111
Q ss_pred HHHhHHCCCCCCHHHHHHHHHHHh--cccchHhHHHHHHHHHHhC-CCch--HhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012504 190 FHRMKLANESPNSVTLVSLVSACT--SLINVRAGESIHSYAVVNG-LELD--VALGTALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 190 ~~~m~~~~~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
+.. ++|+...-..++-++. ...+.+.|...+....... +.+. ..+...+.......+...++...++...
T Consensus 232 ~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~ 306 (644)
T PRK11619 232 ART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI 306 (644)
T ss_pred hhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 111 1222211111111211 3345577777777664433 2222 1223333333333322556666666544
Q ss_pred CC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc---------
Q 012504 265 EK--NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVY--------- 333 (462)
Q Consensus 265 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------- 333 (462)
.. +.....--+..-...++++.+...+..|.... .-...-.--+.+++...|+.++|..+|+.+....
T Consensus 307 ~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~ 385 (644)
T PRK11619 307 MRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQ 385 (644)
T ss_pred cccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 32 33334444445557777877777777765432 2233344455666666788888888777764321
Q ss_pred --CCCCc------hhH--------HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 012504 334 --NIKPT------MEH--------YGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKL 397 (462)
Q Consensus 334 --~~~~~------~~~--------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 397 (462)
|.+++ ... -..-+..+...|+...|...+..+....+......+.......|.. +.+......
T Consensus 386 ~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~-~~ai~~~~~ 464 (644)
T PRK11619 386 RLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWW-DLSVQATIA 464 (644)
T ss_pred HcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCH-HHHHHHHhh
Confidence 11100 000 0112334455666666666665554344444444455555566666 666555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.17 E-value=8.9 Score=31.17 Aligned_cols=89 Identities=7% Similarity=-0.062 Sum_probs=44.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPTEPNAVILRS-----FLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG 420 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 420 (462)
...+..+|++++|...++.....|....+.. |.+.....|.+ +.|...++......-. +.....-++++...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~-D~AL~~L~t~~~~~w~-~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA-DAALKTLDTIKEESWA-AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH-HHHHHHHhccccccHH-HHHHHHhhhHHHHcC
Confidence 3445566666666666665443332222222 33445556666 6665555443332111 112334456666666
Q ss_pred CHHHHHHHHHHHhcCC
Q 012504 421 NWDTAAELMVAINQKG 436 (462)
Q Consensus 421 ~~~~A~~~~~~~~~~~ 436 (462)
+.++|+.-|+...+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 6666666666665554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.14 E-value=6.3 Score=34.56 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=74.2
Q ss_pred hCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC-C-----hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHH
Q 012504 130 VGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR-D-----VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSV 203 (462)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 203 (462)
.|.+....+...++..-....+++.++..+-++... + ..+-.+.++.+. .-++++++.++..=.+.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 344555556666666666678888888888777632 1 112223334333 346779999998889999999999
Q ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHhC
Q 012504 204 TLVSLVSACTSLINVRAGESIHSYAVVNG 232 (462)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 232 (462)
++..+|+.+.+.++...|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999998887777654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.10 E-value=1 Score=39.66 Aligned_cols=90 Identities=11% Similarity=-0.030 Sum_probs=37.0
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLY 389 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 389 (462)
|.++|.+++|+..|..... ..| |+.++..-..+|.+..++..|..-...... +.-...|..-+.+-...|+. .
T Consensus 107 yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~-~ 182 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN-M 182 (536)
T ss_pred hhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH-H
Confidence 3444444444444444432 222 344444444444444444444433333211 00111222222223334444 5
Q ss_pred HHHHHHHHHHhcCCCCC
Q 012504 390 LDDNLGKLLLKLEPELG 406 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~ 406 (462)
+|..-++.++++.|.+.
T Consensus 183 EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHhHHHHHhhCcccH
Confidence 55555555555555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.28 Score=38.16 Aligned_cols=86 Identities=8% Similarity=0.002 Sum_probs=64.3
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhH
Q 012504 106 FVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSD 185 (462)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (462)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777888889999999999999877666788889999999999888988888884433 333456666777777777
Q ss_pred HHHHHHHhH
Q 012504 186 ALKVFHRMK 194 (462)
Q Consensus 186 a~~~~~~m~ 194 (462)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.62 Score=25.59 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=14.6
Q ss_pred CchHhHHHHHHHHHHhcCChHHHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAF 257 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~ 257 (462)
|-+...|+.+..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445566666666666666666654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.81 E-value=22 Score=35.08 Aligned_cols=274 Identities=9% Similarity=0.018 Sum_probs=156.9
Q ss_pred hhHHHHHHhcCCCC-ChhhHHHHHH----H-HHcCCChhHHHHHHHHhHH-------CCCCCCHHHHHHHHHHHhccc--
Q 012504 152 IDVAKAVFEEMPVR-DVVSWSSMIA----G-FVACDSPSDALKVFHRMKL-------ANESPNSVTLVSLVSACTSLI-- 216 (462)
Q Consensus 152 ~~~A~~~~~~~~~~-~~~~~~~l~~----~-~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 216 (462)
...|.+.++..... +...-..+.. + +....+.+.|+.+|+.... .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45567777666543 3333322222 2 4466789999999998866 44 2334445556665533
Q ss_pred ---chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh-cCChHHHHHHHhhccCCC-hhhHHHHHHHHH----HcCChHHH
Q 012504 217 ---NVRAGESIHSYAVVNGLELDVALGTALVEMYSK-CGHVEKAFKVFNLMREKN-LQSWTIMISGLA----DNGRGNYA 287 (462)
Q Consensus 217 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~a 287 (462)
+.+.|..++....+.| .|+.......+..... ..+...|.++|....+.+ +.++-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677888998888887 4554444333322222 246788999998887643 333333333332 23477889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH---Hh----cCCHHHHHH
Q 012504 288 ISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDML---GR----AGLIEEAYH 360 (462)
Q Consensus 288 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~~~~A~~ 360 (462)
..++++..+.| .|....-...+..+.. +..+.+.-.+..+... +.......-..++... .. ..+...+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 99999999987 4443322333333444 6666666666655443 3322211111111111 11 225566677
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc---CCHHHHHHHHHHHh
Q 012504 361 IIRNMPTEPNAVILRSFLGACRNH----GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS---GNWDTAAELMVAIN 433 (462)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 433 (462)
.+.....+.+......+...|... .+. +.+...+..+.... ......++.++..- ..+..|.++++...
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~-~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~ 536 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDP-EKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQAS 536 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCCh-HHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHH
Confidence 777765555666665555554433 235 67777777766655 55677777777542 22688888888776
Q ss_pred cCC
Q 012504 434 QKG 436 (462)
Q Consensus 434 ~~~ 436 (462)
+.+
T Consensus 537 ~~~ 539 (552)
T KOG1550|consen 537 EED 539 (552)
T ss_pred hcC
Confidence 644
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.69 E-value=8 Score=29.91 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=32.5
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGLIEEAYHIIRNMPTE 368 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 368 (462)
..++.+++..+++.+. .+.|+ ..++. ...+...|+|++|.++|+++...
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 4677788888888776 34454 33333 33466788888888888887654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.67 Score=25.16 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=26.1
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.+|..++.+|...|++++|.+.|++..+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 368889999999999999999999887643
|
... |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.59 E-value=17 Score=33.53 Aligned_cols=182 Identities=17% Similarity=0.160 Sum_probs=107.5
Q ss_pred cCChHHHHHHHhhccCC----ChhhHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhhccCcHH
Q 012504 250 CGHVEKAFKVFNLMREK----NLQSWTIMISG-LADNGRGNYAISLFAKMIQTGLKPD----SISFSAILSACSHLGLVD 320 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~~----~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~ 320 (462)
.|+..++.+.+..+... .+..|-.|+.+ .....++.+|+++|+..+-. -|. ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 47777777777776532 33455555554 34456778888888877653 232 223333344556778888
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHH-HHHHHH---hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGC-MVDMLG---RAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGK 396 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 396 (462)
++..+-....++|...|-..-|.. +...+. ..-..+.-..++..|...-....|-.+.+.-.-.|+. +.|...-+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~-~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKT-ELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcH-HHHHHHHH
Confidence 887777777766555554333322 222333 3334556666777776443456777777788888888 88888888
Q ss_pred HHHhcCCCCCchHHHHHHHH-----hhcCCHHHHHHHHHHHhcC
Q 012504 397 LLLKLEPELGANYVLAASVS-----SLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 397 ~~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~ 435 (462)
++..+...+. .-...+..| .-..++++|.+.+..+...
T Consensus 282 ~A~~L~~~~~-~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 282 RALKLADPDS-ADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 8887653322 222233333 2345677777666655443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.17 E-value=11 Score=36.31 Aligned_cols=148 Identities=21% Similarity=0.126 Sum_probs=79.1
Q ss_pred hcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHH
Q 012504 249 KCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
-.|+++.|..++..+.++ ..+.++..+.+.|-.++|+++ .+|+. -|. ...+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe----lal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFE----LALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhh----hhhhcCcHHHHHHHHH
Confidence 346666666655555432 233444555556655555543 22322 122 2235677777766655
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 328 EMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+. +....+-....+.+..+.
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------~~~LlLl~t~~g~~-~~l~~la~~~~~~g~~N~- 726 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRARD------LGSLLLLYTSSGNA-EGLAVLASLAKKQGKNNL- 726 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc------hhhhhhhhhhcCCh-hHHHHHHHHHHhhcccch-
Confidence 442 344577777777777777777777766541 33445555555655 444444444444444332
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 408 NYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
...+|...|+++++.+++.+
T Consensus 727 ----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 727 ----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHHHcCCHHHHHHHHHh
Confidence 22244456666666666543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.75 Score=26.37 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=22.4
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3577889999999999999999987753
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.1 Score=23.98 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
-.+..++...|+. +.|...++++.+..|++
T Consensus 4 ~~~a~~~~~~g~~-~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDY-DEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHH-HHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCH-HHHHHHHHHHHHHCcCC
Confidence 3456677778888 88888888888877763
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.92 Score=26.66 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=23.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 410 VLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.50 E-value=13 Score=29.63 Aligned_cols=43 Identities=2% Similarity=-0.046 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 121 GSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
.++++.+.+.+++|+...+..+++.+.+.|++.....+++--.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence 3455556666777777777777777777777666555554443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.38 E-value=3.6 Score=35.77 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
+.+-.+|.+.+++ +.|.++.+.+..+.|+++.-+.-.+.+|.+.|.+..|..=++..++.-
T Consensus 185 ~nLK~~~~~~~~~-~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 185 DTLKAALMEEKQM-ELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHcCcH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 3444555666666 666666666666666666555556666666666666666555555443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.14 E-value=20 Score=31.55 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=12.4
Q ss_pred HcCCChhHHHHHHHHhHH
Q 012504 178 VACDSPSDALKVFHRMKL 195 (462)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~ 195 (462)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356777777777777654
|
It is also involved in sporulation []. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=86.95 E-value=2.2 Score=29.94 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 393 NLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
..++...+.+|+|......++..+...|++++|++.+-.+++..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33444445566666666666666666666666666655555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.81 E-value=1.5 Score=38.67 Aligned_cols=89 Identities=15% Similarity=-0.012 Sum_probs=70.9
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHH
Q 012504 346 VDMLGRAGLIEEAYHIIRNMP-TEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 423 (462)
...|.+.|.+++|+..|.... ..| ++.++..-..+|.+...+ ..|+.-...+..++.....+|..-+.+-...|+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F-A~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF-AQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH-HHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 356889999999999998753 345 777777778889999999 99999888888887766777887777777788888
Q ss_pred HHHHHHHHHhcC
Q 012504 424 TAAELMVAINQK 435 (462)
Q Consensus 424 ~A~~~~~~~~~~ 435 (462)
+|.+=++...+.
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 887777665544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.42 E-value=6.1 Score=27.84 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=30.0
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHH
Q 012504 185 DALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAV 229 (462)
Q Consensus 185 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 229 (462)
++.+-++.+....+.|++......+++|.+.+|+..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555555556666777777777777777777777777776655
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.78 E-value=17 Score=35.13 Aligned_cols=99 Identities=11% Similarity=-0.078 Sum_probs=58.5
Q ss_pred hcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHH
Q 012504 46 LSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHS 125 (462)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 125 (462)
..|+++.|.++..+. .+..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+....+-.
T Consensus 649 ~lgrl~iA~~la~e~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA---NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hcCcHHHHHHHHHhh---cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 445666666655444 3556677777777777777777777766543 3445555555666655555555
Q ss_pred HHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcC
Q 012504 126 LIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEM 162 (462)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 162 (462)
...+.|.. |...-+|...|+++++.+++.+-
T Consensus 717 ~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 55554422 33444555666666666666444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.45 E-value=42 Score=33.58 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhh
Q 012504 65 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRC 114 (462)
Q Consensus 65 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 114 (462)
+...--.+|--+.++|++++|.++....... .......+...+..+...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4555667888889999999999999665543 455667788888888765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.29 E-value=25 Score=30.74 Aligned_cols=60 Identities=15% Similarity=0.021 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
++......|...|.+ .+|.++.++++..+|-+...+..|...+...|+--.|.+-++.+.
T Consensus 281 llgkva~~yle~g~~-neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKP-NEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCCh-HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455678999999 999999999999999999999999999999999888888887765
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.90 E-value=45 Score=33.46 Aligned_cols=139 Identities=9% Similarity=-0.029 Sum_probs=78.3
Q ss_pred CHHHHHHHhccCCCCCC----cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHH
Q 012504 49 SLHFTRSLFNNLPVTPP----LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVH 124 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 124 (462)
.+++|+++.+..+..+. ...+...|..+.-.|++++|-...-.|... +..-|...+..++..++......++
T Consensus 371 ~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~Ia~~l 446 (846)
T KOG2066|consen 371 KYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDIAPYL 446 (846)
T ss_pred HHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchhhccC
Confidence 67778877776654422 345677788888888888888888777653 4555555555555555443322211
Q ss_pred HHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC--------------------CCChhhHHHHHHHHHcCCChh
Q 012504 125 SLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP--------------------VRDVVSWSSMIAGFVACDSPS 184 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~ 184 (462)
-......++..|..++..+.. .+...=.+...+-+ ..+...-..|+..|...+++.
T Consensus 447 ---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~ 522 (846)
T KOG2066|consen 447 ---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYE 522 (846)
T ss_pred ---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChH
Confidence 011112344556666655555 22222222221111 012233445778888888888
Q ss_pred HHHHHHHHhHH
Q 012504 185 DALKVFHRMKL 195 (462)
Q Consensus 185 ~a~~~~~~m~~ 195 (462)
.|+.++-..++
T Consensus 523 ~Al~~ylklk~ 533 (846)
T KOG2066|consen 523 KALPIYLKLQD 533 (846)
T ss_pred HHHHHHHhccC
Confidence 88888876654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.75 E-value=13 Score=32.74 Aligned_cols=100 Identities=19% Similarity=0.185 Sum_probs=70.7
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC-CCh-----hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 012504 232 GLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE-KNL-----QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSIS 305 (462)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 305 (462)
|.+....+...++..-....++++++..+-++.. ++. .+-...++ ++-.-++++++.++..=+.-|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchhh
Confidence 4455555666666666667788888888777763 211 11111222 2334567788888888888899999999
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
++.++..+.+.+++.+|.++.-.|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999998888877765
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.62 E-value=7.2 Score=27.79 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh
Q 012504 185 DALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 185 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555566666666666677777777777776666666544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.59 E-value=10 Score=31.06 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=36.0
Q ss_pred hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh---CCCchHhHHHHHHHHHHhcCChHHH
Q 012504 184 SDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN---GLELDVALGTALVEMYSKCGHVEKA 256 (462)
Q Consensus 184 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 256 (462)
+.|.+.|-.+...+.--++.....+...|. ..+.+++..++....+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555443333333333333333 45555555555555543 1234555666666666666665554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.49 E-value=25 Score=30.21 Aligned_cols=158 Identities=13% Similarity=0.178 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhHHC---CC--CCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh-----CCCchHhHH
Q 012504 171 SSMIAGFVACDSPSDALKVFHRMKLA---NE--SPNSVTLVSLVSACTSLINVRAGESIHSYAVVN-----GLELDVALG 240 (462)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 240 (462)
..++..+.+.+++++..+.|.++..- .+ .-+....+.+++..+...+.+.....++.-.+. +-+.-..+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 34455556666666666666655321 11 123344555555555444444433333322211 111112233
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC------------CC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE------------KN---LQSWTIMISGLADNGRGNYAISLFAKMIQT-GLKPDSI 304 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~------------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~ 304 (462)
..|...|...+++.+..+++.++.+ .+ ...|..-|+.|....+-.....++++...- ..-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 4566777777777777777766652 11 245666778887777777777777766532 2334444
Q ss_pred HHHHHHHHh-----hccCcHHHHHHHHHHH
Q 012504 305 SFSAILSAC-----SHLGLVDEGKNYFDEM 329 (462)
Q Consensus 305 ~~~~ll~~~-----~~~~~~~~a~~~~~~~ 329 (462)
.... ++-| .+.|.+++|..-|-+.
T Consensus 229 ImGv-IRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 229 IMGV-IRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred HHhH-HHHcCCccccccchHHHHHhHHHHH
Confidence 4333 3333 3456777665433333
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.44 E-value=1.9 Score=22.20 Aligned_cols=28 Identities=14% Similarity=0.042 Sum_probs=19.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 408 NYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 408 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
++..++.++...|++++|...++...+.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 5666777777777777777777766543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.41 E-value=0.76 Score=40.45 Aligned_cols=88 Identities=14% Similarity=0.217 Sum_probs=53.5
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHH
Q 012504 351 RAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 351 ~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 428 (462)
..|.++.|++.|..... ++....|..=.+++.+.++. ..+++-+..+..++|+...-|-.-+.+..-.|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp-~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP-NAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCC-chhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34556666666655532 23334444444556666666 6666666666666776666666666666666777777766
Q ss_pred HHHHhcCCCcc
Q 012504 429 MVAINQKGLNK 439 (462)
Q Consensus 429 ~~~~~~~~~~~ 439 (462)
|....+.++.+
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 66666665544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.05 E-value=2.7 Score=23.90 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666677777777777777666553
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.81 E-value=90 Score=36.01 Aligned_cols=308 Identities=14% Similarity=0.065 Sum_probs=158.6
Q ss_pred HHHHHHHhCCCchhHHHHHHHH----HHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHH
Q 012504 71 TLIRAYAKTSCSIESIKLFDEM----LKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMY 146 (462)
Q Consensus 71 ~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (462)
.+..+-.+.+.+..|+..++.- .+.. ....-|..+...|+..++++...-+...-. -+... ..-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl-~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSL-YQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccH-HHHHHHH
Confidence 3444566788888999888883 2211 122334445558999999999887766411 12222 2344556
Q ss_pred HhcCChhHHHHHHhcCCCCC---hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHH-HHHHhcccchHhHH
Q 012504 147 AACKEIDVAKAVFEEMPVRD---VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSL-VSACTSLINVRAGE 222 (462)
Q Consensus 147 ~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~ 222 (462)
...|+++.|...|+.+.+.+ ...++-++......|.++.++...+-.... ..+....++++ +.+.-+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 78899999999999998542 446777777777778888877766655443 23333333332 33345667777766
Q ss_pred HHHHHHHHhCCCchHhHHHH--HHHHHHhcC--ChHHHHHHHhhccC-----------CC--hhhHHHHHHHHHHcCChH
Q 012504 223 SIHSYAVVNGLELDVALGTA--LVEMYSKCG--HVEKAFKVFNLMRE-----------KN--LQSWTIMISGLADNGRGN 285 (462)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~-----------~~--~~~~~~l~~~~~~~~~~~ 285 (462)
..+. ..+ ...|.. ++....+.. +.-.-.+.++.+.+ .. ...|..++....-..-..
T Consensus 1539 ~~l~---~~n----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS---DRN----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh---ccc----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 6554 111 111211 222222211 11111111111111 00 123444433322211100
Q ss_pred HHHHHHHHHHHCCCCCCHH------HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHhcCC
Q 012504 286 YAISLFAKMIQTGLKPDSI------SFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-----TMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 286 ~a~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~ 354 (462)
..+... +..++.. -|..-+.--....+..+-+--+++..-.....| -..+|....+....+|+
T Consensus 1612 ----~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1612 ----SIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred ----HHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence 011110 1222211 111111111111111111111221111101122 25678888888888999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 355 IEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 355 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
++.|...+-.+.+..-+..+-....-.+..|+. ..|..++++..+.
T Consensus 1686 ~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~-~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESRLPEIVLERAKLLWQTGDE-LNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHhhccH-HHHHHHHHHHHHh
Confidence 999988776665433445555667778999999 9999999998864
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.65 E-value=13 Score=26.38 Aligned_cols=86 Identities=16% Similarity=0.253 Sum_probs=53.6
Q ss_pred hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 218 VRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
.++|..|-+.+...+- ....+-..-+..+...|+|++|..+.+.+.-||+..|.++-. -+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4556666655555441 122333333455677788888888888888888888876644 3566667777777777766
Q ss_pred CCCCCHHHHH
Q 012504 298 GLKPDSISFS 307 (462)
Q Consensus 298 ~~~p~~~~~~ 307 (462)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.65 E-value=12 Score=31.68 Aligned_cols=58 Identities=12% Similarity=-0.021 Sum_probs=35.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
..++...|++ -++++.-..+++..|.+..+|+.-+.+.+..=+.++|..=|....+..
T Consensus 237 ~QC~L~~~e~-yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEY-YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3445555666 666666666666666666666666666666666666666665555443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.40 E-value=12 Score=35.05 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=68.5
Q ss_pred HHcCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 279 ADNGRGNYAISL-FAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 279 ~~~~~~~~a~~~-~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
...|+...|-+- +.-++...-.|+.......| +...|+++.+...+....+ -+.....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 344555555443 33333333344444333333 4566777777777776654 344455666777777777777777
Q ss_pred HHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 358 AYHIIRNMPTE--PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 358 A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
|...-..|... .++.+...........|-+ +++...++++..++|+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~-d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLF-DKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHH-HHHHHHHHHHhccCChh
Confidence 77776665321 2333333333334445556 77777777777666543
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=83.31 E-value=14 Score=26.30 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=53.5
Q ss_pred chhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHC
Q 012504 117 IGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLA 196 (462)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 196 (462)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+..||...|.+|.. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555544311 22222223345667888888888888888888888877754 4567777777777777776
Q ss_pred CCCCCHHHHH
Q 012504 197 NESPNSVTLV 206 (462)
Q Consensus 197 ~~~p~~~~~~ 206 (462)
| .|....|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.27 E-value=32 Score=30.38 Aligned_cols=125 Identities=12% Similarity=-0.058 Sum_probs=58.3
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-cHHHHHHHHHHHHHhcCCCCchhHHHH
Q 012504 266 KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG-LVDEGKNYFDEMARVYNIKPTMEHYGC 344 (462)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 344 (462)
++..+-...+.++.+.++ ++++..+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 344444445555555554 3455555554442 33333333444444332 12344444444433 345555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
-+.++.+.|+. .|...+-+....++. ....+.++...|.. .+...+..+.+..|
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~~~--~~~a~~ALg~ig~~--~a~p~L~~l~~~~~ 265 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKGTV--GDLIIEAAGELGDK--TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCCch--HHHHHHHHHhcCCH--hHHHHHHHHHhhCC
Confidence 66666666663 344433333323332 23455556666654 35555555555455
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.13 E-value=54 Score=32.90 Aligned_cols=185 Identities=12% Similarity=0.106 Sum_probs=88.0
Q ss_pred HhcCChHHHHHHHhhccCC-----C-----hhhHHH--HHHHHHHcCChHHHHHHHH--------HHHHCCCCCCHHHHH
Q 012504 248 SKCGHVEKAFKVFNLMREK-----N-----LQSWTI--MISGLADNGRGNYAISLFA--------KMIQTGLKPDSISFS 307 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~-----~-----~~~~~~--l~~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~ 307 (462)
+-.+++..|...+..+.+. + ...+.. ..-.+...|+.+.|...|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 4456777777777766531 1 112222 2233445688888888887 344444444444433
Q ss_pred HH--HHHhhc--cCcHHH--HHHHHHHHHHhcCCCCc--hhHHHHH-HHHHHhc---------CCHHHHHHHH-HhCCCC
Q 012504 308 AI--LSACSH--LGLVDE--GKNYFDEMARVYNIKPT--MEHYGCM-VDMLGRA---------GLIEEAYHII-RNMPTE 368 (462)
Q Consensus 308 ~l--l~~~~~--~~~~~~--a~~~~~~~~~~~~~~~~--~~~~~~l-~~~~~~~---------~~~~~A~~~~-~~~~~~ 368 (462)
.+ +..+.. .....+ ...+++.+.....-.|+ ..++..+ +.++... ..+.++++.. +.....
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 31 111121 222223 67777766543233333 2333333 3333211 1233444444 333221
Q ss_pred CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhc---CCCCC-chHH-----HHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 369 PNA-VILRSFLGACRNHGQVLYLDDNLGKLLLKL---EPELG-ANYV-----LAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 369 ~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~---~p~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
--. ..++.+...+. .|+. .+........... .|+.. ..|. .+...+...|+.++|....++...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~-~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDV-GEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCH-HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 111 22332333333 6777 5544444444432 23333 2343 344457788999999998876643
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.04 E-value=2.6 Score=21.62 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
.|..+...+...+++ +.|...++...+..|.
T Consensus 3 ~~~~~a~~~~~~~~~-~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDY-DEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHccCCC
Confidence 344556666666777 7777777766666553
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.96 E-value=14 Score=30.26 Aligned_cols=73 Identities=11% Similarity=-0.024 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhcCCHHHH
Q 012504 285 NYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNI--KPTMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A 358 (462)
+.|.+.|-.+...+.--++.....+...|. ..+.+++..++.+.....+- .+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433333333333333332 34444555544444432111 23444555555555555554444
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.94 E-value=6.5 Score=32.54 Aligned_cols=72 Identities=14% Similarity=0.030 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHH
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNM-PTEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAAS 414 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 414 (462)
.+.-+..+.+.++.++|+...+.- +.+| +...-..++..++-.|++ ++|..-++-+-++.|++. +.|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw-~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDW-EKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchH-HHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344566777888899998887664 4444 445556678888999999 999988888888888764 34444543
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.89 E-value=4.7 Score=27.14 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=25.0
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHI 361 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~ 361 (462)
..++.+.|+..|....+...-+|+ ..++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666554222222 23445556666666666665544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.85 E-value=28 Score=29.40 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=31.6
Q ss_pred HHhcCCHHHHHHHHHhCCCC---CCHHHHH---HHHH---HHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 349 LGRAGLIEEAYHIIRNMPTE---PNAVILR---SFLG---ACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~---~l~~---~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
-...+++.+|+++|+++... .+..-|. .++. ++....+. -.+...+++..++.|.-..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~-v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADE-VNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccH-HHHHHHHHHHHhcCCccccc
Confidence 34567778888888776321 1111111 0111 12223556 66777778888887765443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.94 E-value=60 Score=32.66 Aligned_cols=152 Identities=14% Similarity=0.114 Sum_probs=78.7
Q ss_pred HHhhhhcCchhHHHHHHHHHHhCCCC---ccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhH
Q 012504 109 KACGRCLLIGIGGSVHSLIFKVGLDS---DKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSD 185 (462)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (462)
+.+.+.+.+++|....+.-. |..| -.......|..+...|++++|-...-.|...+..-|.-.+..+...++...
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 34444555555554433321 2222 223456667777777777777777777766666666666666655555443
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHH------------------HHHHHHhCCCchHhHHHHHHHHH
Q 012504 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESI------------------HSYAVVNGLELDVALGTALVEMY 247 (462)
Q Consensus 186 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~------------------~~~~~~~~~~~~~~~~~~l~~~~ 247 (462)
...+ +.......+...|..++..+.. .+...-.++ -.+..+. ..+......|+..|
T Consensus 442 Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 442 IAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLY 515 (846)
T ss_pred hhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHH
Confidence 3222 1111111233344444444333 111111110 0111111 12233445588999
Q ss_pred HhcCChHHHHHHHhhccCCCh
Q 012504 248 SKCGHVEKAFKVFNLMREKNL 268 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~~~ 268 (462)
...+++.+|...+-...++++
T Consensus 516 l~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHccChHHHHHHHHhccChHH
Confidence 999999999999998887654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.60 E-value=25 Score=35.19 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=34.6
Q ss_pred HHHHHHHhcCChhHHHHHHhcCC---CCChhhHHHHHHHHHcCCC-------hhHHHHHHHHhHHCCCCCCH
Q 012504 141 TLLRMYAACKEIDVAKAVFEEMP---VRDVVSWSSMIAGFVACDS-------PSDALKVFHRMKLANESPNS 202 (462)
Q Consensus 141 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~ 202 (462)
++|-.|.++|++++|.++..+.. .+....+...+..|....+ -++...-|++........|+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 56777889999999999983333 2334456666666665422 23555556655544332244
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=81.57 E-value=44 Score=30.80 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=48.9
Q ss_pred CHHHHHHH---HHHHHHcCChHHHHHHHHHHHHhcCCC-CCchHHHHHHHHh-hcCCHHHHHHHHHHHhc
Q 012504 370 NAVILRSF---LGACRNHGQVLYLDDNLGKLLLKLEPE-LGANYVLAASVSS-LSGNWDTAAELMVAINQ 434 (462)
Q Consensus 370 ~~~~~~~l---~~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 434 (462)
|...|.++ +..+.+.|-+ ..|.++.+-+..++|. ||-.-...+..|+ +.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~-rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCW-RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34444443 4577889999 9999999999999999 8766666677665 78888888888886554
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=80.51 E-value=6.8 Score=24.17 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=24.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 376 SFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 376 ~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
.+.-++.+.|++ +.|.+..+.+++.+|++..+
T Consensus 6 ~lAig~ykl~~Y-~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEY-EKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-H-HHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhH-HHHHHHHHHHHhhCCCcHHH
Confidence 456678899999 99999999999999988643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.8 bits (187), Expect = 6e-15
Identities = 27/198 (13%), Positives = 62/198 (31%), Gaps = 9/198 (4%)
Query: 182 SPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGT 241
S A + + A ESP L L+ +++ ++ L
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 242 ALVEMYSKCGHVEKAFKVFNLMREK-------NLQSWTIMISGLADNGRGNYAISLFAKM 294
A + + A + + + L + ++ G A G + + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 295 IQTGLKPDSISFSAILSACSHLGLVDEG-KNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353
GL PD +S++A L + ++M++ +K ++ RA
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRAT 250
Query: 354 LIEEAYHIIRNMPTEPNA 371
+++ + + P
Sbjct: 251 VLKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 1e-06
Identities = 11/132 (8%), Positives = 43/132 (32%), Gaps = 7/132 (5%)
Query: 88 LFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYA 147
L D + P +++ L + + + + L + +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 148 ACKEIDVAKAVFEEM-------PVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESP 200
++ +A + + + +++++ G+ + + + V +K A +P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 201 NSVTLVSLVSAC 212
+ ++ + +
Sbjct: 199 DLLSYAAALQCM 210
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.9 bits (112), Expect = 6e-06
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR 113
L YN ++ +A+ E + + + GL PD +Y ++ GR
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 2e-09
Identities = 56/364 (15%), Positives = 110/364 (30%), Gaps = 101/364 (27%)
Query: 30 SLDHNTC---IISRF--ILTSLSISLHFTRSL-FNNLPVTPP----LFAYNTLIRAYA-- 77
+ + + C + +RF + LS + SL +++ +TP L R
Sbjct: 261 AFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 78 KTSCSIE--SIKLFDEMLKTGL-RPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDS 134
+ + + + E ++ GL DN+ + K L I S++ L +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-----LTTIIESSLNVL------EP 368
Query: 135 DKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDV--------VSWSSMIAGFVACDSPSDA 186
+Y +M+ +VF + W +I
Sbjct: 369 AEY-----RKMFDRL-------SVFPP----SAHIPTILLSLIWFDVIK-----SDVMVV 407
Query: 187 LKVFHRMKLANESPNSVTLVSLVS-ACTSLINVRAGESIH-----SYAVVNGLELDVALG 240
+ H+ L + P T +S+ S + + ++H Y + + D L
Sbjct: 408 VNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-DLI 465
Query: 241 TALVEMY---------SKCGHVEKAFKVFNLMREKNLQ-SW---TIMISGLADNGRGNYA 287
++ Y H E+ L R L + I A N G+
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPER----MTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 288 -----ISLFAKMIQ------TGLKPDSISF------SAILSACS---HLGLVDEGKNYFD 327
+ + I L + F + I S + + L+ E + F+
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 328 EMAR 331
E +
Sbjct: 582 EAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 3e-09
Identities = 71/464 (15%), Positives = 141/464 (30%), Gaps = 114/464 (24%)
Query: 3 SRHIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPV 62
I+ +I V +L L ++ +F+ L I+ F S
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLL----SKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 63 TP------------PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGL---RPDNFTYPFV 107
P L+ N + Y ++ ++ + + L+ L RP V
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKY-----NVSRLQPYLK-LRQALLELRPA----KNV 153
Query: 108 VKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMY----AACKEIDVAKAVFEEMP 163
+ G ++G G + + V S K +++ C + + +++
Sbjct: 154 L-IDG---VLGSGKTW--VALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 164 VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANES-PNSVTLV-------SLVSA---- 211
+ +W+S +++ R L ++ N + LV +A
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLS 265
Query: 212 CTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVE--KAF-KVFNLMREKNL 268
C L+ R V + L +L E K + R ++L
Sbjct: 266 CKILLTTR------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDL 318
Query: 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGL-------KPDSISFSAILSAC-SHLGLVD 320
+ + +S+ A+ I+ GL + + I+ + + L
Sbjct: 319 PREVLTTNPR--------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PA 369
Query: 321 EGKNYFDEMARVY----NIKPT---------MEHYGCMVDM--LGRAGLIEE-----AYH 360
E + FD ++ V+ +I PT + MV + L + L+E+
Sbjct: 370 EYRKMFDRLS-VFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 361 I----IRNMPTEPNAVIL-RSFLGA-------CRNHGQVLYLDD 392
I + N L RS + + YLD
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 462 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.45 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.21 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.19 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.17 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.13 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.09 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.03 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.01 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.01 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.98 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.96 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.95 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.94 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.94 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.92 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.89 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.89 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.88 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.87 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.86 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.83 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.81 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.79 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.76 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.75 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.73 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.73 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.72 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.71 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.71 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.69 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.67 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.67 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.67 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.65 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.58 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.55 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.54 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.53 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.49 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.47 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.47 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.43 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.4 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.37 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.35 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.34 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.33 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.33 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.31 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.28 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.26 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.26 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.24 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.23 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.23 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.22 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.19 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.12 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.02 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.02 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.0 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.96 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.95 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.94 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.94 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.87 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.84 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.82 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.66 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.45 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.34 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.33 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.21 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.11 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.09 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.05 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.02 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.01 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.99 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.95 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.76 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.69 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.68 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.5 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.45 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.44 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.35 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.29 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.28 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.09 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.08 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.4 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.32 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.85 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.34 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.27 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.23 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.22 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.18 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.16 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.04 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.9 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.9 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.53 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.89 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.6 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.22 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.29 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.61 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.34 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.79 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.6 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.31 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 87.2 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.97 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.81 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.79 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.19 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.29 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.52 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 82.93 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.83 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 80.66 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.38 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=312.24 Aligned_cols=424 Identities=9% Similarity=-0.065 Sum_probs=369.3
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCC-CCCcccHHHHHHHHHhCCCch
Q 012504 6 IETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPV-TPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~-~~~~~~y~~li~~~~~~g~~~ 83 (462)
+...+...|+++.|..+++.+.. ..|+..++..+. .+...|++++|..+|+++.. .++..+++.++.+|.+.|+++
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHH
Confidence 34445556899999999999985 456777887777 67777899999999999842 388999999999999999999
Q ss_pred hHHHHHHHHHHC---------------CCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchH---------
Q 012504 84 ESIKLFDEMLKT---------------GLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIG--------- 139 (462)
Q Consensus 84 ~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------- 139 (462)
+|+++|+++... |..++..+|..++.++.+.|++++|.++|+.+.+.++. +...+
T Consensus 168 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 246 (597)
T 2xpi_A 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLL 246 (597)
T ss_dssp HHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCS
T ss_pred HHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcc
Confidence 999999953221 22335789999999999999999999999999987632 22222
Q ss_pred -----------------------------hHHHHHHHhcCChhHHHHHHhcCCC--CChhhHHHHHHHHHcCCChhHHHH
Q 012504 140 -----------------------------NTLLRMYAACKEIDVAKAVFEEMPV--RDVVSWSSMIAGFVACDSPSDALK 188 (462)
Q Consensus 140 -----------------------------~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 188 (462)
+.++..|.+.|++++|.++|+++.. ++..+|+.++..|.+.|++++|.+
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 326 (597)
T 2xpi_A 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326 (597)
T ss_dssp CHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHH
Confidence 2235566788999999999999987 789999999999999999999999
Q ss_pred HHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---
Q 012504 189 VFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--- 265 (462)
Q Consensus 189 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 265 (462)
+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 327 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 404 (597)
T 2xpi_A 327 ITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404 (597)
T ss_dssp HHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999998865 4477889999999999999999999999999765 66788999999999999999999999998863
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 012504 266 KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCM 345 (462)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 345 (462)
.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|..+
T Consensus 405 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 481 (597)
T 2xpi_A 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNEL 481 (597)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 467899999999999999999999999999874 347789999999999999999999999999874 34568899999
Q ss_pred HHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 346 VDMLGRAGLIEEAYHIIRNM-------PTEPN--AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
+..|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++ ++|...++++.+..|+++.+|..++.+|
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY-DAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999999988 33566 78999999999999999 9999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHhcCCCc
Q 012504 417 SLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+.|++++|.++++++.+.++.
T Consensus 561 ~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=288.90 Aligned_cols=404 Identities=7% Similarity=-0.066 Sum_probs=350.1
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCCC------------------Cc
Q 012504 6 IETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVTP------------------PL 66 (462)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~~------------------~~ 66 (462)
+..++..+|+++.|..+++.+... .++..+++.+. .+...|++++|.++|+++.... +.
T Consensus 123 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 123 LAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhH
Confidence 456667779999999999988643 67888899888 6666789999999999543212 47
Q ss_pred ccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHH--------------------------------------H
Q 012504 67 FAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFV--------------------------------------V 108 (462)
Q Consensus 67 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------------------------------l 108 (462)
.+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+ +
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 89999999999999999999999999986432 22332222 4
Q ss_pred HHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhH
Q 012504 109 KACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP---VRDVVSWSSMIAGFVACDSPSD 185 (462)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 185 (462)
..|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+++.++.++.+.|++++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHH
Confidence 4566789999999999998876 5788999999999999999999999999986 3477899999999999999999
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC
Q 012504 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE 265 (462)
Q Consensus 186 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 265 (462)
|.++++++.+.. +.+..++..++..|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 358 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 358 LYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998653 5678899999999999999999999999999875 55788999999999999999999999998864
Q ss_pred ---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc---CCCCc-
Q 012504 266 ---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVY---NIKPT- 338 (462)
Q Consensus 266 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~- 338 (462)
.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+
T Consensus 436 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 436 LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 467899999999999999999999999999864 3478899999999999999999999999997642 44676
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012504 339 -MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASV 415 (462)
Q Consensus 339 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 415 (462)
..+|..++.+|.+.|++++|.+.++++.. +.+..+|..+..+|...|++ ++|...++++.+..|+++..+..++.+
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP-GLAITHLHESLAISPNEIMASDLLKRA 593 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 78999999999999999999999998743 45789999999999999999 999999999999999999999999887
Q ss_pred Hhh
Q 012504 416 SSL 418 (462)
Q Consensus 416 ~~~ 418 (462)
|..
T Consensus 594 ~~~ 596 (597)
T 2xpi_A 594 LEE 596 (597)
T ss_dssp TC-
T ss_pred Hhc
Confidence 753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-28 Score=225.77 Aligned_cols=366 Identities=10% Similarity=-0.012 Sum_probs=245.1
Q ss_pred cCCHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHH
Q 012504 47 SISLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVH 124 (462)
Q Consensus 47 ~~~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 124 (462)
.|++++|.+.++++. .+.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...+
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 457777777665542 11234455556666677777777777777766643 235566777777777777777777777
Q ss_pred HHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC
Q 012504 125 SLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN 201 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 201 (462)
+.+.+.. +.+..++..+..++.+.|++++|.+.|+++.. | +...+..+...+...|++++|.+.|+++.+.. +.+
T Consensus 91 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 168 (388)
T 1w3b_A 91 RHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 7777653 22344567777777777777777777776652 2 34456666677777777777777777776642 234
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHH
Q 012504 202 SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGL 278 (462)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 278 (462)
..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++..+ .+..++..+...+
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence 5667777777777777777777777777765 44556667777777777777777777766542 2456677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHH
Q 012504 279 ADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 279 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 358 (462)
...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|...++++.+. .+.+..++..+...+.+.|++++|
T Consensus 248 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777652 223556677777777777777777777777653 344566777777777777777777
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 012504 359 YHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG 420 (462)
Q Consensus 359 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 420 (462)
.+.++++.. +.+..++..+...+...|++ ++|...++++.+..|+.+.++..++.++...|
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKL-QEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC-HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 777776643 23456677777777777777 77777777777777777777777777666555
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-28 Score=224.55 Aligned_cols=357 Identities=13% Similarity=0.078 Sum_probs=309.4
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCCCC-cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcC
Q 012504 72 LIRAYAKTSCSIESIKLFDEMLKTGLRPD-NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACK 150 (462)
Q Consensus 72 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 150 (462)
+...+.+.|++++|++.++.+.+.. |+ ...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 4566788999999999999998753 44 4455566667888999999999999998875 457788999999999999
Q ss_pred ChhHHHHHHhcCC--CC-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHH
Q 012504 151 EIDVAKAVFEEMP--VR-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSY 227 (462)
Q Consensus 151 ~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (462)
++++|+..|+++. .| +..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...+++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999876 23 56689999999999999999999999998853 23445677788889999999999999999
Q ss_pred HHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 012504 228 AVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI 304 (462)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 304 (462)
+.+.. +.+..++..+..++...|++++|...|+++.+ .+...|..+...+...|++++|...+++..... +.+..
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 99875 55678899999999999999999999999874 345788899999999999999999999998863 22567
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
++..+..++...|++++|...++++... .+.+..+|..+..++.+.|++++|.+.|+++.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 8889999999999999999999999863 334577899999999999999999999998743 467889999999999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
..|++ ++|...++++.+..|+++.++..++.+|.+.|++++|++.++++.+..+
T Consensus 317 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 317 EQGNI-EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TTTCH-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999 9999999999999999999999999999999999999999999987654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=241.09 Aligned_cols=211 Identities=11% Similarity=0.065 Sum_probs=174.4
Q ss_pred hHHHHHHHHHHCCCCCCcc-hHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcC
Q 012504 84 ESIKLFDEMLKTGLRPDNF-TYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEM 162 (462)
Q Consensus 84 ~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 162 (462)
.+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|++||..+|++||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4455667777777665543 57888899999999999999999999999999999999999988887765431
Q ss_pred CCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHH
Q 012504 163 PVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTA 242 (462)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 242 (462)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|+.
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 23456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhhcc----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 012504 243 LVEMYSKCGHVEKAFKVFNLMR----EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL 316 (462)
Q Consensus 243 l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 316 (462)
+|.+|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.+++++|++.|..|+..||+.++..|...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999997 4788999999999999999999999999999999999999999999888764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=239.95 Aligned_cols=185 Identities=13% Similarity=0.137 Sum_probs=175.5
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcC---------chhHHHHHHHHHHhCCCCcc
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLL---------IGIGGSVHSLIFKVGLDSDK 136 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 136 (462)
...++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+. +++|.++|++|...|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987654 67899999999999999999
Q ss_pred chHhHHHHHHHhcCChhHHHHHHhcCC----CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHH
Q 012504 137 YIGNTLLRMYAACKEIDVAKAVFEEMP----VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSAC 212 (462)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 212 (462)
.+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999986 5799999999999999999999999999999999999999999999999
Q ss_pred hcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhc
Q 012504 213 TSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKC 250 (462)
Q Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 250 (462)
++.|++++|.+++++|.+.|..|+..+|+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-25 Score=210.78 Aligned_cols=386 Identities=10% Similarity=-0.067 Sum_probs=301.4
Q ss_pred hhcCCHHHHHHHhccCCC-CCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHH
Q 012504 45 SLSISLHFTRSLFNNLPV-TPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSV 123 (462)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~-~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 123 (462)
...|++++|...|+++.. .|+..+|..+..++.+.|++++|++.++.+.+.++ .+...+..+..++...|++++|...
T Consensus 17 ~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 17 FRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344588888888877642 27888888888888888888888888888887642 2456777888888888888888888
Q ss_pred HHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHH--------------------------------------hcCC--
Q 012504 124 HSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVF--------------------------------------EEMP-- 163 (462)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~--------------------------------------~~~~-- 163 (462)
++.+.+.+. ++......++..+........+.+.+ ....
T Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 888887763 33333333443333322222211111 1110
Q ss_pred -------CC-ChhhHHHHHHHHHc---CCChhHHHHHHHHhHH-----CCCC--------CCHHHHHHHHHHHhcccchH
Q 012504 164 -------VR-DVVSWSSMIAGFVA---CDSPSDALKVFHRMKL-----ANES--------PNSVTLVSLVSACTSLINVR 219 (462)
Q Consensus 164 -------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------p~~~~~~~l~~~~~~~~~~~ 219 (462)
.| +...+......+.. .|++++|...|+++.+ .... .+...+..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 01 13444445554554 8999999999999887 3112 23457778888999999999
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+|...++++.+.... ...+..+..++...|++++|...++++.+ .+..++..+...+...|++++|...++++.+
T Consensus 255 ~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 255 GAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp HHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999988633 88889999999999999999999998875 3567899999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC--
Q 012504 297 TGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN-- 370 (462)
Q Consensus 297 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-- 370 (462)
... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++.. .++
T Consensus 333 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 333 LDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp TCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred hCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 643 35678888999999999999999999999874 344577889999999999999999999988732 222
Q ss_pred --HHHHHHHHHHHHH---cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 371 --AVILRSFLGACRN---HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 371 --~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
...+..+...+.. .|++ +.|...++++.+..|+++.++..++.+|.+.|++++|...+++..+.++.
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENF-IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhhhhhcCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 4488889999999 9999 99999999999999999999999999999999999999999999876654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-23 Score=198.10 Aligned_cols=345 Identities=9% Similarity=-0.043 Sum_probs=221.8
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHH
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLL 143 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (462)
.+..+|..+...+.+.|++++|+.+|+.+.+.. +.+...+..+..++...|++++|...++.+.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345567777777777777777777777777643 2256666667777777777777777777777664 22344555566
Q ss_pred HHHHhcCChhHHHHHHhcCCCC---Ch---hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc
Q 012504 144 RMYAACKEIDVAKAVFEEMPVR---DV---VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN 217 (462)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 217 (462)
.+|.+.|++++|...|+++... +. .++..+...+.. ..+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 6666666666666666555432 11 333333322100 011122334556667
Q ss_pred hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 012504 218 VRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKM 294 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 294 (462)
+++|...++++.+.. +.+..++..++.+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|...|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777766654 44566666677777777777777777776653 35566777777777777777777777777
Q ss_pred HHCCCCCC-HHHHHHH------------HHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHhcCCHHHHH
Q 012504 295 IQTGLKPD-SISFSAI------------LSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 295 ~~~~~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~ 359 (462)
... .|+ ...+..+ ...+...|++++|...|+.+.....-.|. ...+..+..++.+.|++++|.
T Consensus 238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 654 233 3333333 66777888888888888888764111111 346777788888888888888
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHH------------HHhhcC-----
Q 012504 360 HIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAAS------------VSSLSG----- 420 (462)
Q Consensus 360 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g----- 420 (462)
..++++.. +.+...|..+..+|...|++ +.|...++++.+..|+++.++..++. .|...|
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMY-DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 88887632 34677888888888888888 88888888888888888877777773 344445
Q ss_pred CHHHHHHHHHH-HhcCCC
Q 012504 421 NWDTAAELMVA-INQKGL 437 (462)
Q Consensus 421 ~~~~A~~~~~~-~~~~~~ 437 (462)
+.+++.+.+++ ..+..+
T Consensus 395 ~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp CTTHHHHHHHHHHHHSCG
T ss_pred CHHHHHHHHHHHHHHhCC
Confidence 55666777775 334333
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=196.93 Aligned_cols=363 Identities=10% Similarity=-0.019 Sum_probs=238.3
Q ss_pred chhhhhhHh-hhhhcCCHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHH
Q 012504 34 NTCIISRFI-LTSLSISLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKA 110 (462)
Q Consensus 34 ~~~~~~~ll-~~~~~~~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 110 (462)
+...+..+. .+...|++++|...|+++. .+.+..+|..+...+...|++++|++.|+.+.+.+.. +...+..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 444555554 4455679999999998764 2257888999999999999999999999999987533 57788889999
Q ss_pred hhhhcCchhHHHHHHHHHHhCCCCcc---chHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHH
Q 012504 111 CGRCLLIGIGGSVHSLIFKVGLDSDK---YIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDAL 187 (462)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (462)
+...|++++|...++.+.+..+ .+. ..+..++..+... .+..+...+...|++++|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999987642 233 5555555442211 1222333445556666666
Q ss_pred HHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--
Q 012504 188 KVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE-- 265 (462)
Q Consensus 188 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 265 (462)
..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++.+|...|++++|...|+++.+
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666655532 2345555556666666666666666666665543 34455666666666666666666666665542
Q ss_pred C-ChhhHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHhhccCcHHHHHHHHH
Q 012504 266 K-NLQSWTIM------------ISGLADNGRGNYAISLFAKMIQTGLKPD-----SISFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 266 ~-~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
| +...+..+ +..+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 22233322 67778888888888888888774 333 3366777777888888888888888
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH------------HHHcC-----ChH
Q 012504 328 EMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFLGA------------CRNHG-----QVL 388 (462)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~------------~~~~~-----~~~ 388 (462)
.+... .+.+...|..+..+|...|++++|.+.++++.. .| +...+..+..+ |...| +.
T Consensus 320 ~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~- 396 (450)
T 2y4t_A 320 EVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK- 396 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT-
T ss_pred HHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH-
Confidence 87753 233577788888888888888888888887632 33 34555555422 22333 45
Q ss_pred HHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHhhcCCHHH
Q 012504 389 YLDDNLGKL-LLKLEPELGA----------NYVLAASVSSLSGNWDT 424 (462)
Q Consensus 389 ~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 424 (462)
+++.+.+++ +.+..|+... .+..+..+|...|+.+.
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 666777776 6677776542 34445555555555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=201.85 Aligned_cols=397 Identities=8% Similarity=-0.087 Sum_probs=310.2
Q ss_pred HHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchh
Q 012504 8 TLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIE 84 (462)
Q Consensus 8 ~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~ 84 (462)
..+-..|+++.|...++.+++.. |+...+..+. .+...|++++|...|++.. .+.+..+|..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence 44555689999999999999886 6777777777 5566679999999998763 22456789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHh----------------------------------
Q 012504 85 SIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKV---------------------------------- 130 (462)
Q Consensus 85 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------------- 130 (462)
|+..|+.+.+.+. ++......++..+........+.+.+..+...
T Consensus 92 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (514)
T 2gw1_A 92 AMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170 (514)
T ss_dssp HHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred HHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence 9999999998763 34555555555444333222222222111100
Q ss_pred -CC---------CCccchHhHHHHHHHh---cCChhHHHHHHhcCCC----------------C-ChhhHHHHHHHHHcC
Q 012504 131 -GL---------DSDKYIGNTLLRMYAA---CKEIDVAKAVFEEMPV----------------R-DVVSWSSMIAGFVAC 180 (462)
Q Consensus 131 -~~---------~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~~~ 180 (462)
.. +.+...+..+...+.. .|++++|...|+++.. + +..++..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (514)
T 2gw1_A 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250 (514)
T ss_dssp SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence 00 0112333334444443 8999999999988654 1 345788889999999
Q ss_pred CChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHH
Q 012504 181 DSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVF 260 (462)
Q Consensus 181 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 260 (462)
|++++|...|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...+
T Consensus 251 ~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 251 NDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999998864 447888889999999999999999999998875 556778999999999999999999999
Q ss_pred hhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC
Q 012504 261 NLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP 337 (462)
Q Consensus 261 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 337 (462)
++..+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.....-.+
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 98763 356789999999999999999999999998863 33567888889999999999999999999986522222
Q ss_pred c----hhHHHHHHHHHHh---cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 338 T----MEHYGCMVDMLGR---AGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 338 ~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
+ ...+..+...+.. .|++++|.+.++++.. +.+...+..+...+...|++ +.|...++++.+..|+++..
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDI-DEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSSHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhccccHHH
Confidence 2 3488999999999 9999999999998742 34678888999999999999 99999999999999998877
Q ss_pred HHHH
Q 012504 409 YVLA 412 (462)
Q Consensus 409 ~~~l 412 (462)
+..+
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-22 Score=193.99 Aligned_cols=250 Identities=12% Similarity=0.001 Sum_probs=207.8
Q ss_pred CChhHHHHHHHHhHHCCCCCC--------HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 181 DSPSDALKVFHRMKLANESPN--------SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 181 ~~~~~a~~~~~~m~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
|++++|..+|+++.+.. |+ ..++..+...+...|++++|...++.+.+.. |+...+..+...+...|+
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 291 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKEN 291 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcC
Confidence 47889999999988753 43 2246666777888999999999999999875 447888899999999999
Q ss_pred hHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 012504 253 VEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 253 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
+++|...++++.+ .+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998864 456789999999999999999999999999864 224678888999999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----C----CCHHHHHHHHHHHHHc----------CChHHHH
Q 012504 330 ARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----E----PNAVILRSFLGACRNH----------GQVLYLD 391 (462)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----~~~~~~~~l~~~~~~~----------~~~~~~a 391 (462)
... .+.+...+..+...+...|++++|.+.|+++.. . .....+......+... |++ +.|
T Consensus 371 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~A 447 (537)
T 3fp2_A 371 KLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF-NAA 447 (537)
T ss_dssp HHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH-HHH
T ss_pred HHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH-HHH
Confidence 874 344577889999999999999999999988732 1 1223344556677777 999 999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 392 DNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
...++++.+..|+++.++..++.+|.+.|++++|.+.|++..+....
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999998876544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-20 Score=169.39 Aligned_cols=325 Identities=9% Similarity=-0.043 Sum_probs=195.8
Q ss_pred cccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHH
Q 012504 66 LFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRM 145 (462)
Q Consensus 66 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (462)
+..|..+...+...|++++|++.|+.+.+... .+...+..+..++...|++++|...++.+.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 45566777777788888888888888776532 245666667777777777777777777777664 2234555556666
Q ss_pred HHhcCChhHHHHHHhcCCCCCh------hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchH
Q 012504 146 YAACKEIDVAKAVFEEMPVRDV------VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVR 219 (462)
Q Consensus 146 ~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 219 (462)
+...|++++|...|++....++ ..+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666655543221 11211110000 001122245556666666
Q ss_pred hHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 220 AGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+|...++++.+.. +.+...+..+..++...|++++|...+++..+ .+..++..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7766666666654 44556666666777777777777777766553 2445666667777777777777777777666
Q ss_pred CCCCCCHHHHH------------HHHHHhhccCcHHHHHHHHHHHHHhcCCCCch--hHHHHHHHHHHhcCCHHHHHHHH
Q 012504 297 TGLKPDSISFS------------AILSACSHLGLVDEGKNYFDEMARVYNIKPTM--EHYGCMVDMLGRAGLIEEAYHII 362 (462)
Q Consensus 297 ~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~ 362 (462)
... .+...+. .+...+...|++++|...++++.....-.+.. ..+..+..++...|++++|.+.+
T Consensus 217 ~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 217 LDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 421 1222222 22445666777777777777776541111111 23445666777777777777777
Q ss_pred HhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 012504 363 RNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 363 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 418 (462)
+++.. +.+...+..+...+...|++ +.|...++++.+..|+++.++..+..++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 296 SEVLQMEPDNVNALKDRAEAYLIEEMY-DEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 76532 23566777777777777777 777777777777777777666666655443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-20 Score=166.87 Aligned_cols=307 Identities=12% Similarity=-0.002 Sum_probs=219.5
Q ss_pred chHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHH
Q 012504 102 FTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFV 178 (462)
Q Consensus 102 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 178 (462)
..+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++.. .+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345555556666666666666666666654 22344555556666666666666666655441 24445555555566
Q ss_pred cCCChhHHHHHHHHhHHCCCCC---C-HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChH
Q 012504 179 ACDSPSDALKVFHRMKLANESP---N-SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVE 254 (462)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~~~p---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (462)
..|++++|...|++..+. .| + ...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 666666666666655543 23 1 111111111100 111233467889999999
Q ss_pred HHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 255 KAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 255 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
+|.+.++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999864 456789999999999999999999999999863 34677889999999999999999999999987
Q ss_pred hcCCCCchhHHH------------HHHHHHHhcCCHHHHHHHHHhCCC-CCC-H----HHHHHHHHHHHHcCChHHHHHH
Q 012504 332 VYNIKPTMEHYG------------CMVDMLGRAGLIEEAYHIIRNMPT-EPN-A----VILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 332 ~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~----~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
.. +.+...+. .+...+.+.|++++|...++++.. .|+ . ..+..+...+...|++ +.|..
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~ 293 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP-VEAIR 293 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH-HHHHH
Confidence 52 22333332 336678999999999999998743 233 2 3355677889999999 99999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 394 LGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 394 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.++++.+..|+++.++..++.++...|++++|.+.+++..+..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999887654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-21 Score=184.15 Aligned_cols=391 Identities=9% Similarity=-0.033 Sum_probs=277.0
Q ss_pred HHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchhH
Q 012504 9 LIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIES 85 (462)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~a 85 (462)
.+-..|+++.|...++.+++.. +.+...+..+. .+...|++++|.+.|++.. .+.+..+|..+...+...|++++|
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 112 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA 112 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHH
Confidence 3444467777777777777664 22444444444 3444567777777776652 114566677777777777888888
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhC------CCCccc----------------------
Q 012504 86 IKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVG------LDSDKY---------------------- 137 (462)
Q Consensus 86 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~---------------------- 137 (462)
++.|+.+ .. .|+.. ...+..+...+....+...++.+.... ..|+..
T Consensus 113 ~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (537)
T 3fp2_A 113 MFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSS 187 (537)
T ss_dssp HHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCC
T ss_pred HHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcc
Confidence 8777533 22 22211 112233334444455666666554321 011111
Q ss_pred --------hHhHHHHHHHh--------cCChhHHHHHHhcCCCC---C-------hhhHHHHHHHHHcCCChhHHHHHHH
Q 012504 138 --------IGNTLLRMYAA--------CKEIDVAKAVFEEMPVR---D-------VVSWSSMIAGFVACDSPSDALKVFH 191 (462)
Q Consensus 138 --------~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~---~-------~~~~~~l~~~~~~~~~~~~a~~~~~ 191 (462)
....+...+.. .|++++|..+|+++... + ..++..+...+...|++++|...|+
T Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 11222222211 24788999999888643 2 2256777788999999999999999
Q ss_pred HhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CCh
Q 012504 192 RMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNL 268 (462)
Q Consensus 192 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~ 268 (462)
+..+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...|++..+ .+.
T Consensus 268 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 268 ESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Confidence 99885 4668888899999999999999999999999886 55788899999999999999999999998864 356
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC----chhHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP----TMEHYGC 344 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ 344 (462)
..|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-.+ ....+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 789999999999999999999999999873 33566888889999999999999999999876521111 1223445
Q ss_pred HHHHHHhc----------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 345 MVDMLGRA----------GLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 345 l~~~~~~~----------~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
+...+.+. |++++|...|+++.. +.+...+..+...+...|++ +.|...++++.+..|.......
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI-DEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCcHHHHH
Confidence 56777777 999999999998743 44678899999999999999 9999999999999998875543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-21 Score=170.90 Aligned_cols=296 Identities=13% Similarity=0.037 Sum_probs=141.5
Q ss_pred hhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhh
Q 012504 35 TCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRC 114 (462)
Q Consensus 35 ~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 114 (462)
....+.|| ...|++++|.+++++++. | .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...
T Consensus 6 ~~a~~~ll--~~~~~ld~A~~fae~~~~-~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 6 TSAVQVLI--EHIGNLDRAYEFAERCNE-P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHH--HHccCHHHHHHHHHhCCC-h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC
Confidence 33455666 667789999999999965 4 49999999999999999999999653 5888999999999999
Q ss_pred cCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhH
Q 012504 115 LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMK 194 (462)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 194 (462)
|++++|..+++..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|..+...|...|++++|..+|..+
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp ------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 9999999988877764 44577889999999999999999988864 67789999999999999999999999977
Q ss_pred HCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHH
Q 012504 195 LANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIM 274 (462)
Q Consensus 195 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 274 (462)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....+
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~l 213 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEEL 213 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHH
Confidence 37899999999999999999999988 368899999999999999999988777655 455556678
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--cCcHHHHHHHHHHHHHhcCCCC------chhHHHHHH
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH--LGLVDEGKNYFDEMARVYNIKP------TMEHYGCMV 346 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~ 346 (462)
+..|.+.|++++|..+++...... +-....|+.+.-.|++ .+++.+..+.|..- -+++| +...|..++
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999987653 3345566666655554 45555555555432 25555 467899999
Q ss_pred HHHHhcCCHHHHHHHHHhCC
Q 012504 347 DMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~ 366 (462)
-.|.+.++++.|....-+-+
T Consensus 290 ~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHST
T ss_pred HHHHhhchHHHHHHHHHhCC
Confidence 99999999999988776654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=163.46 Aligned_cols=280 Identities=9% Similarity=-0.024 Sum_probs=149.7
Q ss_pred HhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc
Q 012504 139 GNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSL 215 (462)
Q Consensus 139 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 215 (462)
+..+...+...|++++|.++|+++.. .+...+..++..+...|++++|..+++++.+.. +.+...+..+...+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 33333444444444444444443321 122233334444444444455555544444431 22334444444444444
Q ss_pred c-chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHH
Q 012504 216 I-NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 216 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
| ++++|...++++.+.. +.+...+..+..++...|++++|...+++..+ .+...+..+...+...|++++|...+
T Consensus 104 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4 4555555555544433 22344455555555555555555555555442 12344555556666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012504 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN-------IKPTMEHYGCMVDMLGRAGLIEEAYHIIRN 364 (462)
Q Consensus 292 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 364 (462)
+++.+.. +.+...+..+...+...|++++|...++++..... .+....++..+..+|...|++++|.+.+++
T Consensus 183 ~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 183 SQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6665542 22345556666666666666666666666654311 122345666677777777777777777766
Q ss_pred CCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH-hhcCCH
Q 012504 365 MPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS-SLSGNW 422 (462)
Q Consensus 365 ~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 422 (462)
+.. +.+...+..+...+...|++ +.|...++++.+..|+++..+..++.++ ...|+.
T Consensus 262 a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 262 ALVLIPQNASTYSAIGYIHSLMGNF-ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHSTTCSHHHHHHHHHHHHHTCH-HHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHhhCccchHHHHHHHHHHHHhccH-HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 532 23456666677777777777 7777777777777777777777777766 344543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-19 Score=161.03 Aligned_cols=267 Identities=11% Similarity=-0.006 Sum_probs=232.4
Q ss_pred CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 165 RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888889999999999999999998764 3455667778888899999999999999999876 56778899999
Q ss_pred HHHHhcC-ChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 012504 245 EMYSKCG-HVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD 320 (462)
Q Consensus 245 ~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (462)
..+...| ++++|...|++..+ .+...|..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999875 3467899999999999999999999999998642 24566777888999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHHcCChHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-----------EPNAVILRSFLGACRNHGQVLY 389 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ 389 (462)
+|...++++.+ ..+.+...+..+...+...|++++|...++++.. +.....+..+...+...|++ +
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~ 253 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY-A 253 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH-H
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH-H
Confidence 99999999986 3345578899999999999999999999987632 23457888999999999999 9
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 390 LDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.|...++++.+..|+++.++..++.++...|++++|.+.+++..+..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999998877654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-17 Score=157.88 Aligned_cols=351 Identities=11% Similarity=-0.036 Sum_probs=183.2
Q ss_pred CCcccHHHHHHHHHh----CCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhh----hcCchhHHHHHHHHHHhCCCCc
Q 012504 64 PPLFAYNTLIRAYAK----TSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR----CLLIGIGGSVHSLIFKVGLDSD 135 (462)
Q Consensus 64 ~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 135 (462)
.+..++..+...|.. .+++++|+..|+...+.| +...+..+-..+.. .++.++|..+++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 344455555555554 555555666555555543 33444444444444 555555555555555543 3
Q ss_pred cchHhHHHHHHHh----cCChhHHHHHHhcCCCC-ChhhHHHHHHHHHc----CCChhHHHHHHHHhHHCCCCCCHHHHH
Q 012504 136 KYIGNTLLRMYAA----CKEIDVAKAVFEEMPVR-DVVSWSSMIAGFVA----CDSPSDALKVFHRMKLANESPNSVTLV 206 (462)
Q Consensus 136 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~ 206 (462)
...+..|...|.. .+++++|...|++.... +..++..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3344445555554 45555665555554432 34455555555554 455666666666555542 344444
Q ss_pred HHHHHHhc----ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh----cCChHHHHHHHhhccCC-ChhhHHHHHHH
Q 012504 207 SLVSACTS----LINVRAGESIHSYAVVNGLELDVALGTALVEMYSK----CGHVEKAFKVFNLMREK-NLQSWTIMISG 277 (462)
Q Consensus 207 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~ 277 (462)
.+...+.. .++.++|...+++..+.+ +...+..+...|.. .+++++|...|++..+. +...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555544 455666666665555543 23344445555554 45566666666554432 33444455555
Q ss_pred HHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-----CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 278 LAD----NGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL-----GLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 278 ~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
|.. .+++++|...|++..+.| +...+..+...|... +++++|...|++..+. + +...+..+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 555 555666666666555443 233444444444443 5566666666655542 1 23344455555
Q ss_pred HHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh---
Q 012504 349 LGRAG---LIEEAYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL--- 418 (462)
Q Consensus 349 ~~~~~---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 418 (462)
|...| ++++|.+.|++.....++..+..+...|.. .++. +.|..+++++.+.+ ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDE-QQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 55434 455566666555433455555555555555 5555 66666666655542 34455556666555
Q ss_pred -cCCHHHHHHHHHHHhcCC
Q 012504 419 -SGNWDTAAELMVAINQKG 436 (462)
Q Consensus 419 -~g~~~~A~~~~~~~~~~~ 436 (462)
.+++++|...|++..+.+
T Consensus 415 ~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 556666666666555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-19 Score=164.41 Aligned_cols=280 Identities=11% Similarity=-0.045 Sum_probs=222.1
Q ss_pred HhcCChhHHHH-HHhcCCC--C-----ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccch
Q 012504 147 AACKEIDVAKA-VFEEMPV--R-----DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINV 218 (462)
Q Consensus 147 ~~~~~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 218 (462)
...|++++|.. .|++... + +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577888887 7776542 1 34567788888999999999999999988864 45677888888889999999
Q ss_pred HhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC---hhhHHH---------------HHHHHHH
Q 012504 219 RAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN---LQSWTI---------------MISGLAD 280 (462)
Q Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~---------------l~~~~~~ 280 (462)
++|...++++.+.. +.+..++..++.+|...|++++|.+.++++.+.+ ...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999988876 5577888889999999999999999998876422 122211 1333448
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 281 NGRGNYAISLFAKMIQTGLKP-DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 281 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
.|++++|...++++.+..... +..++..+...+...|++++|...++++... .+.+...+..+...+...|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999864321 4778899999999999999999999999874 2445788999999999999999999
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHhhcCCHHHHH
Q 012504 360 HIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL-----------GANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 360 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 426 (462)
+.++++.. +.+...+..+..++...|++ +.|...++++.+..|++ ..++..++.+|...|++++|.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAH-REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99998743 45678899999999999999 99999999999988877 678999999999999999999
Q ss_pred HHHHH
Q 012504 427 ELMVA 431 (462)
Q Consensus 427 ~~~~~ 431 (462)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 98874
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.6e-18 Score=160.15 Aligned_cols=352 Identities=9% Similarity=-0.006 Sum_probs=292.1
Q ss_pred cCCHHHHHHHhccCCCCCCcccHHHHHHHHHh----CCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhh----hcCch
Q 012504 47 SISLHFTRSLFNNLPVTPPLFAYNTLIRAYAK----TSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGR----CLLIG 118 (462)
Q Consensus 47 ~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~ 118 (462)
.++++.|...|++.....+..++..|...|.. .+++++|++.|++..+.| +...+..+-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 45999999999877555678889999999998 999999999999999875 56667777777777 78999
Q ss_pred hHHHHHHHHHHhCCCCccchHhHHHHHHHh----cCChhHHHHHHhcCCC-CChhhHHHHHHHHHc----CCChhHHHHH
Q 012504 119 IGGSVHSLIFKVGLDSDKYIGNTLLRMYAA----CKEIDVAKAVFEEMPV-RDVVSWSSMIAGFVA----CDSPSDALKV 189 (462)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~ 189 (462)
+|...++...+.| +...+..|...|.. .++.++|.+.|++..+ .+..++..+...|.. .++.++|++.
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999999998876 45667778888887 7899999999988764 477888888888888 8999999999
Q ss_pred HHHhHHCCCCCCHHHHHHHHHHHhc----ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh----cCChHHHHHHHh
Q 012504 190 FHRMKLANESPNSVTLVSLVSACTS----LINVRAGESIHSYAVVNGLELDVALGTALVEMYSK----CGHVEKAFKVFN 261 (462)
Q Consensus 190 ~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 261 (462)
|++..+.| +...+..+...+.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 99998864 55667777777765 789999999999998865 44566677788887 899999999999
Q ss_pred hccCC-ChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---cHHHHHHHHHHHHHh
Q 012504 262 LMREK-NLQSWTIMISGLADN-----GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG---LVDEGKNYFDEMARV 332 (462)
Q Consensus 262 ~~~~~-~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 332 (462)
+..+. +...+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|..+|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 98754 567788888888887 89999999999999875 4556666777776645 899999999999874
Q ss_pred cCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCC
Q 012504 333 YNIKPTMEHYGCMVDMLGR----AGLIEEAYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~ 404 (462)
.+...+..|...|.. .+++++|.+.|++.....++..+..+...|.. .++. +.|...|+++.+.+|+
T Consensus 361 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~-~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 361 ----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDY-VQAWAWFDTASTNDMN 435 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHHHCC
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCCCC
Confidence 457788889999988 89999999999998666678888889999988 8999 9999999999998854
Q ss_pred ---CCchHHHHHHHHhh
Q 012504 405 ---LGANYVLAASVSSL 418 (462)
Q Consensus 405 ---~~~~~~~l~~~~~~ 418 (462)
++.....++.++..
T Consensus 436 ~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 436 LFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHTTSCHH
T ss_pred CcCCHHHHHHHHhcCHh
Confidence 66666666665544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-17 Score=147.01 Aligned_cols=272 Identities=11% Similarity=0.019 Sum_probs=217.0
Q ss_pred HHHHhcCChhHHHHHHhcCCCCCh----hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchH
Q 012504 144 RMYAACKEIDVAKAVFEEMPVRDV----VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVR 219 (462)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 219 (462)
+-....|+++.|+..++.....++ .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 345567999999999988765442 3445678899999999999986654 2 3567778888889999999999
Q ss_pred hHHHHHHHHHHhCC-CchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012504 220 AGESIHSYAVVNGL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTG 298 (462)
Q Consensus 220 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 298 (462)
+|.+.++++...+. +.+...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++.+..
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 99999999988764 44567778888999999999999999999 5677899999999999999999999999999864
Q ss_pred CCCCHHHH---HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHH
Q 012504 299 LKPDSISF---SAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVI 373 (462)
Q Consensus 299 ~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 373 (462)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.. +.++.+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 553211 12233444568999999999999984 456788999999999999999999999999733 447888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
+..++..+...|+..+.+.++++++.+..|+++.+. ....+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 999999999999993347899999999999998443 3344555666655443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-17 Score=158.86 Aligned_cols=369 Identities=11% Similarity=-0.042 Sum_probs=244.4
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHC-----C--CCC-CcchHHHHHHHhhhhcCchhHHHHHHHHHHhCC---
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT-----G--LRP-DNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGL--- 132 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--- 132 (462)
..+..||.|...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...+++..+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 45667999999999999999999999987642 1 123 345788899999999999999999998876421
Q ss_pred ---CC-ccchHhHHHHHHHh--cCChhHHHHHHhcCCC--C-ChhhHHHHHHH---HHcCCChhHHHHHHHHhHHCCCCC
Q 012504 133 ---DS-DKYIGNTLLRMYAA--CKEIDVAKAVFEEMPV--R-DVVSWSSMIAG---FVACDSPSDALKVFHRMKLANESP 200 (462)
Q Consensus 133 ---~~-~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p 200 (462)
.+ ...++..+..++.. .+++++|+..|++..+ | +...+..+... +...++.++|++.+++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 11 22345555555554 4578999999998762 3 45555555444 445688899999999887753 33
Q ss_pred CHHHHHHHHHHHh----cccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHH
Q 012504 201 NSVTLVSLVSACT----SLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTI 273 (462)
Q Consensus 201 ~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ 273 (462)
+...+..+...+. ..++.++|...+++..... +.+..++..+...|...|++++|...+++..+ | +..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 5555555554443 3467889999999998876 66778888999999999999999999998874 3 4456666
Q ss_pred HHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC
Q 012504 274 MISGLAD-------------------NGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYN 334 (462)
Q Consensus 274 l~~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 334 (462)
+...|.. .+.+++|...+++..+.. +.+..++..+...+...|++++|...|++.... .
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~ 364 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-E 364 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-C
Confidence 6655532 233567888888877753 224557788888999999999999999998864 3
Q ss_pred CCCch--hHHHHHHH-HHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 335 IKPTM--EHYGCMVD-MLGRAGLIEEAYHIIRNMP-TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 335 ~~~~~--~~~~~l~~-~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
..+.. ..+..+.. .+...|++++|++.|++.. ..|+..... +.. ..+..++++..+.+|+++.++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~-~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMK-DKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHH-HHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHH-HHHHHHHHHHHHhCCCCHHHHH
Confidence 22221 12333333 2346789999999998763 234432221 223 5567778888889999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCCCccCCccceE
Q 012504 411 LAASVSSLSGNWDTAAELMVAINQKGLNKVPGCSWV 446 (462)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 446 (462)
.++.+|...|++++|++.|++..+.+...+.+.+|+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999887766666654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-19 Score=161.84 Aligned_cols=261 Identities=11% Similarity=-0.044 Sum_probs=214.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888888999999999999999988763 4567788889999999999999999999998876 556788899999
Q ss_pred HHHhcCChHHHHHHHhhccCCCh-------------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 012504 246 MYSKCGHVEKAFKVFNLMREKNL-------------QSWTIMISGLADNGRGNYAISLFAKMIQTGLK-PDSISFSAILS 311 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~ 311 (462)
+|...|++++|...|+++.+.++ ..+..+...+...|++++|...++++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999998875222 22344578899999999999999999987432 25788999999
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLY 389 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 389 (462)
.+...|++++|...++++.+. .+.+..+|..+..+|.+.|++++|.+.|+++.. +.+..++..+..+|...|++ +
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY-R 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-H
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH-H
Confidence 999999999999999999874 344688999999999999999999999998743 34588899999999999999 9
Q ss_pred HHHHHHHHHHhcCCC------------CCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 390 LDDNLGKLLLKLEPE------------LGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
+|...++++.+..|+ +..++..++.++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998776 366899999999999999999887764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-16 Score=152.01 Aligned_cols=395 Identities=10% Similarity=0.006 Sum_probs=278.9
Q ss_pred chhhhhhHh-hhhhcCCHHHHHHHhccCCCC-C-CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHH
Q 012504 34 NTCIISRFI-LTSLSISLHFTRSLFNNLPVT-P-PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKA 110 (462)
Q Consensus 34 ~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~-~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 110 (462)
+...|..++ . ...|+++.|+.+|++.-.. | +...|...+..+.+.|++++|..+|++++.. .|+...|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 556677666 2 2346889999888876432 3 4556888888888899999999999998875 3666666666543
Q ss_pred h-hhhcCchhHHH----HHHHHHHh-CCCC-ccchHhHHHHHHHh---------cCChhHHHHHHhcCCC-CCh---hhH
Q 012504 111 C-GRCLLIGIGGS----VHSLIFKV-GLDS-DKYIGNTLLRMYAA---------CKEIDVAKAVFEEMPV-RDV---VSW 170 (462)
Q Consensus 111 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~-~~~---~~~ 170 (462)
. ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++... |.. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 34577777665 66666543 4443 34566666666554 6788899999988764 221 233
Q ss_pred HHHHHH---H----------HcCCChhHHHHHHHHhH------HCC---CCCCH--------HHHHHHHHHHhc----cc
Q 012504 171 SSMIAG---F----------VACDSPSDALKVFHRMK------LAN---ESPNS--------VTLVSLVSACTS----LI 216 (462)
Q Consensus 171 ~~l~~~---~----------~~~~~~~~a~~~~~~m~------~~~---~~p~~--------~~~~~l~~~~~~----~~ 216 (462)
...... + .+.+++..|..++..+. +.. ++|+. ..|...+..... .+
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 322211 0 12345677777776532 111 24432 334443332221 12
Q ss_pred ch----HhHHHHHHHHHHhCCCchHhHHHHHHHHHHh-------cCChH-------HHHHHHhhccC---C-ChhhHHHH
Q 012504 217 NV----RAGESIHSYAVVNGLELDVALGTALVEMYSK-------CGHVE-------KAFKVFNLMRE---K-NLQSWTIM 274 (462)
Q Consensus 217 ~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~---~-~~~~~~~l 274 (462)
+. +.+..+|++.+... +.+...|..++..+.+ .|+++ +|..+|++..+ | +...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 22 36777888888874 5678888888888876 79987 89999998874 3 46789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHh
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPD-S-ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM-LGR 351 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 351 (462)
+..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|+.++|..+|++..+. .+.+...|...+.. +..
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHH
Confidence 99999999999999999999985 454 2 47888888888899999999999999863 22233344333222 346
Q ss_pred cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc----hHHHHHHHHhhcCCHHHH
Q 012504 352 AGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA----NYVLAASVSSLSGNWDTA 425 (462)
Q Consensus 352 ~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A 425 (462)
.|++++|..+|+.... +.+...|..++..+.+.|+. +.|..+|+++....|.++. +|...+......|+.+.+
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~-~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED-NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH-HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999998743 34678899999999999999 9999999999998877665 777788888889999999
Q ss_pred HHHHHHHhcCCC
Q 012504 426 AELMVAINQKGL 437 (462)
Q Consensus 426 ~~~~~~~~~~~~ 437 (462)
..+++++.+..+
T Consensus 483 ~~~~~r~~~~~p 494 (530)
T 2ooe_A 483 LKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHHHHHCc
Confidence 999998876544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-18 Score=154.48 Aligned_cols=258 Identities=10% Similarity=-0.004 Sum_probs=139.6
Q ss_pred hHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC---CCChhhHHHHHHHHHc
Q 012504 103 TYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP---VRDVVSWSSMIAGFVA 179 (462)
Q Consensus 103 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 179 (462)
.+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++. ..+..++..+...+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554442 2233444445555555555555555555443 2244555666666666
Q ss_pred CCChhHHHHHHHHhHHCCCCCCHHHHHH---------------HHHHHhcccchHhHHHHHHHHHHhCCCc-hHhHHHHH
Q 012504 180 CDSPSDALKVFHRMKLANESPNSVTLVS---------------LVSACTSLINVRAGESIHSYAVVNGLEL-DVALGTAL 243 (462)
Q Consensus 180 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 243 (462)
.|++++|.+.|+++..... .+...+.. .+..+...|++++|...++++.+..... +..++..+
T Consensus 145 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 6666666666666655421 11111110 1222236667777777777776654211 45666666
Q ss_pred HHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD 320 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 320 (462)
..+|...|++++|...|+++.+ .+..+|..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 6667777777777766666542 234566666666666666666666666666542 223456666666666666666
Q ss_pred HHHHHHHHHHHhcCCC---------CchhHHHHHHHHHHhcCCHHHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIK---------PTMEHYGCMVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 363 (462)
+|...|+++.....-. ....+|..+..+|...|++++|..+++
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 6666666665431100 013455556666666666666655554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-18 Score=154.39 Aligned_cols=260 Identities=9% Similarity=-0.059 Sum_probs=197.8
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHH
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMY 247 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (462)
..+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666667777777777777766542 3355566666677777777777777777777664 44566667777777
Q ss_pred HhcCChHHHHHHHhhccCC---ChhhHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012504 248 SKCGHVEKAFKVFNLMREK---NLQSWTIM--------------IS-GLADNGRGNYAISLFAKMIQTGLKPDSISFSAI 309 (462)
Q Consensus 248 ~~~~~~~~a~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 309 (462)
...|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 7777777777777766532 12222222 22 3677789999999999998864 3367788889
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQV 387 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 387 (462)
...+...|++++|...++++... .+.+...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999874 244578899999999999999999999988732 34678899999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 388 LYLDDNLGKLLLKLEPE------------LGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
+.|...++++.+..|+ ++.++..++.++.+.|++++|..++++..
T Consensus 257 -~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 -DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp -HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred -HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999988 67889999999999999999999987544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.9e-19 Score=158.05 Aligned_cols=281 Identities=9% Similarity=0.001 Sum_probs=88.4
Q ss_pred hhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHH
Q 012504 113 RCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHR 192 (462)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 192 (462)
+.|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+++++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344555555555554 12235556666666666666666666442 3444555566666666666666665554
Q ss_pred hHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHH
Q 012504 193 MKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWT 272 (462)
Q Consensus 193 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (462)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 4442 2334555556666666666666555553 244456666666666666666666666654 3566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc
Q 012504 273 IMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA 352 (462)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (462)
.++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.....++..|.+.
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHC
Confidence 6666666666666666666655 14556666666666666666664333221 12222233455666666
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhcCC-----CCCchHHHHHHHHhhcCCHH
Q 012504 353 GLIEEAYHIIRNMPT--EPNAVILRSFLGACRNH--GQVLYLDDNLGKLLLKLEP-----ELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 353 ~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~ 423 (462)
|++++|..+++.... +.....|..|...|++- ++. .+..+.|.....+.| .++..|..+...|..-++++
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~-~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM-REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHH-HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 666666666655422 23344555554444433 122 222222222222333 44556666666666666666
Q ss_pred HHHHH
Q 012504 424 TAAEL 428 (462)
Q Consensus 424 ~A~~~ 428 (462)
.|...
T Consensus 300 ~A~~t 304 (449)
T 1b89_A 300 NAIIT 304 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-17 Score=144.45 Aligned_cols=248 Identities=10% Similarity=0.048 Sum_probs=204.2
Q ss_pred HHHHcCCChhHHHHHHHHhHHCCCCCCH--HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 175 AGFVACDSPSDALKVFHRMKLANESPNS--VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
+.....|+++.|++.++..... .|+. .....+.+++...|+++.|...++. . -+|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 4456689999999999887553 3443 3556678899999999999876644 2 36778888999999999999
Q ss_pred hHHHHHHHhhccC----C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 012504 253 VEKAFKVFNLMRE----K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 253 ~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
.++|++.++++.. | +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999998752 3 456778888999999999999999987 4567788899999999999999999999
Q ss_pred HHHHhcCCCCchhH---HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 012504 328 EMARVYNIKPTMEH---YGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 328 ~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~ 402 (462)
++.+. .|+... ...++..+...|++++|..+|+++.. +.+...++.+..++...|++ ++|...++++.+..
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW-EAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHC
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhC
Confidence 99875 355321 12233444556899999999999843 46788999999999999999 99999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCHHH-HHHHHHHHhcCCCc
Q 012504 403 PELGANYVLAASVSSLSGNWDT-AAELMVAINQKGLN 438 (462)
Q Consensus 403 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 438 (462)
|+++.++..++.++...|+.++ +.++++++.+.++.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999976 57899988876654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-16 Score=149.14 Aligned_cols=366 Identities=10% Similarity=0.015 Sum_probs=266.5
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHH
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLL 143 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (462)
-+..+|..++. +.+.|++++|..+|+.+.+.. +-+...|...+..+.+.|+++.|..+|+.++... |+...|...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 37778999998 478999999999999999863 3356678899999999999999999999999875 5666777666
Q ss_pred HHH-HhcCChhHHHH----HHhcCC------CCChhhHHHHHHHHHc---------CCChhHHHHHHHHhHHCCCCCCHH
Q 012504 144 RMY-AACKEIDVAKA----VFEEMP------VRDVVSWSSMIAGFVA---------CDSPSDALKVFHRMKLANESPNSV 203 (462)
Q Consensus 144 ~~~-~~~~~~~~A~~----~~~~~~------~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~ 203 (462)
... ...|+.+.|.+ +|++.. .++...|...+....+ .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45677777665 666542 2356678777776554 688999999999988731111123
Q ss_pred HHHHHHHH---H----------hcccchHhHHHHHHHHHH------hC---CCch--------HhHHHHHHHHHHhc---
Q 012504 204 TLVSLVSA---C----------TSLINVRAGESIHSYAVV------NG---LELD--------VALGTALVEMYSKC--- 250 (462)
Q Consensus 204 ~~~~l~~~---~----------~~~~~~~~a~~~~~~~~~------~~---~~~~--------~~~~~~l~~~~~~~--- 250 (462)
.|...... . ...+++..|..++..+.. .. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 33322211 1 134566777777665332 11 2333 24555555433322
Q ss_pred -CCh----HHHHHHHhhccC---CChhhHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHHHHHH
Q 012504 251 -GHV----EKAFKVFNLMRE---KNLQSWTIMISGLAD-------NGRGN-------YAISLFAKMIQTGLKPDSISFSA 308 (462)
Q Consensus 251 -~~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~ 308 (462)
++. +.+..+|++... .+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...+..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 367778887764 356788888888775 79987 89999999986312335678888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCc-h-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHH-HHH
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPT-M-EHYGCMVDMLGRAGLIEEAYHIIRNMPTE-P-NAVILRSFLGA-CRN 383 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~l~~~-~~~ 383 (462)
++..+.+.|++++|..+|+++.+. +|+ . ..|..++..+.+.|++++|.++|++.... | +...+...... +..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 888899999999999999999863 454 3 58999999999999999999999987542 2 23333332222 346
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 384 HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 384 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
.|+. +.|..+|+++.+..|+++.++..++..+.+.|+.++|..+|++....+.
T Consensus 404 ~~~~-~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 404 SKDK-SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp TCCH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred cCCh-hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 8999 9999999999999999999999999999999999999999999988754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.7e-17 Score=148.70 Aligned_cols=255 Identities=12% Similarity=0.039 Sum_probs=140.4
Q ss_pred HHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC---CCChhhHHHHHHHHHcCCC
Q 012504 106 FVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP---VRDVVSWSSMIAGFVACDS 182 (462)
Q Consensus 106 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 182 (462)
.+...+.+.|++++|...++.+++.. +.+..++..+..++...|++++|+..|++.. ..+..+|..+...|...|+
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcccc
Confidence 33333333344444444444333332 1123334444444444444444444444433 1234455556666666666
Q ss_pred hhHHHHHHHHhHHCCCCCC-----------HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC-chHhHHHHHHHHHHhc
Q 012504 183 PSDALKVFHRMKLANESPN-----------SVTLVSLVSACTSLINVRAGESIHSYAVVNGLE-LDVALGTALVEMYSKC 250 (462)
Q Consensus 183 ~~~a~~~~~~m~~~~~~p~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 250 (462)
+++|+..|+++.+.. |+ ...+..+...+...|++++|...++++.+.... .+..++..+..+|...
T Consensus 149 ~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 149 QQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp HHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 666666666665431 22 122333456677777777777777777776421 1566777777777777
Q ss_pred CChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 012504 251 GHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 251 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
|++++|.+.|++..+ .+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777776653 345667777777777777777777777777652 2235567777777777777777777777
Q ss_pred HHHHhcCCC----------CchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012504 328 EMARVYNIK----------PTMEHYGCMVDMLGRAGLIEEAYHIIRN 364 (462)
Q Consensus 328 ~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 364 (462)
++.+...-. .+...|..+..++...|+.+.+..+.++
T Consensus 306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 766531100 0245566666666666776666666554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-15 Score=148.52 Aligned_cols=374 Identities=10% Similarity=0.019 Sum_probs=278.0
Q ss_pred HHHhhcChhHHHHHHHHHHHhC--CCCchhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHH
Q 012504 9 LIQLSKTVHHLHQLHTLFLKTS--LDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESI 86 (462)
Q Consensus 9 ~l~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~ 86 (462)
.+...|.+.+|.++++..+-.+ +.-+....+.++++....+........++... -+ ...+...+...|.+++|.
T Consensus 994 af~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~-~d---~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 994 AFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDN-YD---APDIANIAISNELFEEAF 1069 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhh-cc---HHHHHHHHHhCCCHHHHH
Confidence 3345578888999988888332 11233455555444444466666666666653 22 445778888899999999
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCC
Q 012504 87 KLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRD 166 (462)
Q Consensus 87 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 166 (462)
.+|++... .....+.++ -..+++++|.++.+.. -+..+|..+..++...|++++|++.|.+. .|
T Consensus 1070 ~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1070 AIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred HHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 99998521 112222232 2678899998888754 24678889999999999999999999775 67
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHH
Q 012504 167 VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEM 246 (462)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (462)
...|..++..+.+.|++++|.++|...++.. +++...+.++.+|++.++++....+. + .++...+..+...
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDR 1204 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHH
Confidence 7888899999999999999999999877754 34333345888899998888644442 2 3455677779999
Q ss_pred HHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 247 YSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
|...|++++|..+|... ..|..+...|++.|++++|.+.+++. .+..+|..+..+|...|++..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999985 58999999999999999999999876 25688998999999999999988866
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhcC
Q 012504 327 DEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNH--GQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~--~~~~~~a~~~~~~~~~~~ 402 (462)
..+ ..++..+..++..|.+.|.+++|+.+++.... +.....|..+...|.+. ++. .++.++|..-....
T Consensus 1274 l~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl-mEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1274 LHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM-REHLELFWSRVNIP 1346 (1630)
T ss_pred Hhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH-HHHHHHHHHhcccc
Confidence 543 23556777899999999999999999987633 23455666666666654 344 55555665555544
Q ss_pred C-----CCCchHHHHHHHHhhcCCHHHHHHHH
Q 012504 403 P-----ELGANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 403 p-----~~~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
| .+...|..+...|.+.|+++.|....
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4 56678999999999999999998543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-16 Score=141.03 Aligned_cols=264 Identities=10% Similarity=-0.000 Sum_probs=170.6
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHH
Q 012504 65 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLR 144 (462)
Q Consensus 65 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (462)
+...|..+...+...|++++|+.+|+.+.+.... +...+..+..++...|++++|...++.+.+.. +.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~------- 90 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIA------- 90 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHH-------
Confidence 4455666677777777777777777777665322 45556666666666677777777666666553 22333
Q ss_pred HHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHH-------------H-HH
Q 012504 145 MYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVS-------------L-VS 210 (462)
Q Consensus 145 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------------l-~~ 210 (462)
++..+...+...|++++|.+.++++.+.. +.+...+.. + ..
T Consensus 91 ------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 91 ------------------------VHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp ------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------
T ss_pred ------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 34444444455555555555555544431 111111111 1 22
Q ss_pred -HHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHH
Q 012504 211 -ACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNY 286 (462)
Q Consensus 211 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 286 (462)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+ .+..++..+...+...|++++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence 3667788888888888888775 44667777788888888888888888877653 345677777888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHHhcCCH
Q 012504 287 AISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-----------TMEHYGCMVDMLGRAGLI 355 (462)
Q Consensus 287 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~ 355 (462)
|...++++.+.. +.+...+..+...+...|++++|...++++.... ... +...+..+..++.+.|++
T Consensus 225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 888888877653 2346677777778888888888888888776541 111 356677777778888888
Q ss_pred HHHHHHHHhC
Q 012504 356 EEAYHIIRNM 365 (462)
Q Consensus 356 ~~A~~~~~~~ 365 (462)
++|..++++.
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 8887777665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-13 Score=137.55 Aligned_cols=341 Identities=12% Similarity=0.020 Sum_probs=243.2
Q ss_pred hHHHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHhhhhhcCCHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCch
Q 012504 4 RHIETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFILTSLSISLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSI 83 (462)
Q Consensus 4 ~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 83 (462)
+.+..++...+.+++|.+++++.. ......+.++ ...+++++|.++.++.. +..+|..+..++...|+++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi--e~i~nldrAiE~Aervn---~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI--EHIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH--HHHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCHH
Confidence 345556666678888888888752 2223334455 55668888888888773 4667888889999999999
Q ss_pred hHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC
Q 012504 84 ESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP 163 (462)
Q Consensus 84 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 163 (462)
+|++.|.+. -|...|..++.++.+.|++++|.+++...++.. ++....+.++.+|++.+++++...+. .
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h
Confidence 999998664 267788888899999999999999998877765 33333345888888888888655543 3
Q ss_pred CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHH
Q 012504 164 VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTAL 243 (462)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 243 (462)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 456667777888888899999999999874 37888888888889999888888766 345788888
Q ss_pred HHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh--ccCcHHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS--HLGLVDE 321 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~ 321 (462)
..+|...|++..|...... ...++..+..++..|.+.|.+++|+.+++...... +-....|+-+...++ +.++..+
T Consensus 1257 ~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 8888888888888887765 44456667788888999999999999997776543 223335554554444 4455555
Q ss_pred HHHHHHHHHHhcCCCC------chhHHHHHHHHHHhcCCHHHHHHHHHhCC--------------CCCCHHHHHHHHHHH
Q 012504 322 GKNYFDEMARVYNIKP------TMEHYGCMVDMLGRAGLIEEAYHIIRNMP--------------TEPNAVILRSFLGAC 381 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------------~~~~~~~~~~l~~~~ 381 (462)
+.+.|..-. +++| +...|..++-.|.+.|+++.|....-+-. ...++..|...+..|
T Consensus 1335 hlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fy 1411 (1630)
T 1xi4_A 1335 HLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY 1411 (1630)
T ss_pred HHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHH
Confidence 555555332 4444 46778888888999999998884433321 124566666666666
Q ss_pred HHcC
Q 012504 382 RNHG 385 (462)
Q Consensus 382 ~~~~ 385 (462)
....
T Consensus 1412 l~~~ 1415 (1630)
T 1xi4_A 1412 LEFK 1415 (1630)
T ss_pred HhhC
Confidence 6433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=132.58 Aligned_cols=219 Identities=11% Similarity=-0.027 Sum_probs=154.8
Q ss_pred HHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC------C----hhhHHH
Q 012504 204 TLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK------N----LQSWTI 273 (462)
Q Consensus 204 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~----~~~~~~ 273 (462)
.+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...+++..+. + ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444555555555555555555555554 44555555555666666666666665555421 1 356677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
+...+...|++++|...|+++... .|+. ..+...|++++|...++.+.. ..+.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 777777888888888888877774 3442 235566778888888888875 22334667778888888888
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 354 LIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 354 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
++++|...++++.. +.+...+..+...+...|++ +.|...++++.+..|+++.++..++.++...|++++|...+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888887632 34577888888888888998 8999999999888888888888889999999999999988888
Q ss_pred HhcCC
Q 012504 432 INQKG 436 (462)
Q Consensus 432 ~~~~~ 436 (462)
..+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 77654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-14 Score=138.62 Aligned_cols=366 Identities=9% Similarity=-0.050 Sum_probs=232.9
Q ss_pred CCchhhhhhHh-hhhhcCCHHHHHHHhccC-----------CCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHC----
Q 012504 32 DHNTCIISRFI-LTSLSISLHFTRSLFNNL-----------PVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKT---- 95 (462)
Q Consensus 32 ~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~-----------~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---- 95 (462)
......||.+- .+...|+.++|++.|++. .......+|+.+..+|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 34455677665 556678899988888653 12134568999999999999999999999887652
Q ss_pred -C-CCC-CcchHHHHHHHhhhh--cCchhHHHHHHHHHHhCCCCccchHhHHHHH---HHhcCChhHHHHHHhcCC---C
Q 012504 96 -G-LRP-DNFTYPFVVKACGRC--LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRM---YAACKEIDVAKAVFEEMP---V 164 (462)
Q Consensus 96 -g-~~p-~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~---~ 164 (462)
+ ..+ ...++.....++... +++++|...|+..++..+. +...+..+..+ +...++.++|++.+++.. .
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 111 234455444444443 5789999999999988532 44455555444 345677888888887754 3
Q ss_pred CChhhHHHHHHHHHc----CCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHH
Q 012504 165 RDVVSWSSMIAGFVA----CDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALG 240 (462)
Q Consensus 165 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 240 (462)
.+..++..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 355666666555443 467889999999987753 4567788889999999999999999999999876 5566677
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 012504 241 TALVEMYSKC-------------------GHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTG 298 (462)
Q Consensus 241 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 298 (462)
..+..+|... +.++.|...+++..+ .+..++..+...|...|++++|...|++..+..
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 7777666432 235667777776653 345688899999999999999999999999865
Q ss_pred CCCCHH--HHHHHHH-HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHH
Q 012504 299 LKPDSI--SFSAILS-ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP--TEPNAVI 373 (462)
Q Consensus 299 ~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~ 373 (462)
..|... .+..+.. .....|+.++|+..|++..+ +.|+........ ..+.++++... .+.+..+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHH
Confidence 443321 2222222 23467899999999999875 355533322222 22333333321 2346778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
|..+..+|...|+. +.|...|+++++.+|..|.+...++
T Consensus 433 ~~~LG~~~~~~g~~-~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 433 LHVLAFLQELNEKM-QQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHC-C------------------------
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999 9999999999999998887766554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=128.42 Aligned_cols=196 Identities=13% Similarity=0.006 Sum_probs=151.7
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAIL 310 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 310 (462)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777788888888888888888888764 345678888888888899999999998888763 22456777888
Q ss_pred HHhhcc-----------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 012504 311 SACSHL-----------GLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFL 378 (462)
Q Consensus 311 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~ 378 (462)
.++... |++++|...+++..+. -+.+...+..+..+|...|++++|+..|+++.. ..+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999864 233477888999999999999999999988621 16788899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.++...|++ ++|...++++.+..|+++.++..++.++...|++++|++.+++..
T Consensus 159 ~~~~~~g~~-~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRL-DEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999999999999999999998764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-16 Score=133.13 Aligned_cols=237 Identities=10% Similarity=-0.075 Sum_probs=189.8
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC--ch----HhHHH
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE--LD----VALGT 241 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 241 (462)
..+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++...+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 467778888888999999999999888776 77788888888899999999999999888775311 11 57888
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDE 321 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 321 (462)
.+..++...|++++|...|++..+.+.. ...+...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHH
Confidence 8899999999999999999887752221 245667788999999999988752 2234577888888999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 322 GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLL 399 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 399 (462)
|...++++... .+.+...+..+..+|...|++++|.+.++++.. +.+...+..+..++...|++ +.|...++++.
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~ 234 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY-ASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 99999999874 244578889999999999999999999988742 34578888899999999999 99999999999
Q ss_pred hcC------CCCCchHHHHHHH
Q 012504 400 KLE------PELGANYVLAASV 415 (462)
Q Consensus 400 ~~~------p~~~~~~~~l~~~ 415 (462)
+.. |++..++..+..+
T Consensus 235 ~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 235 TKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhChhhcCCCchHHHHHHHHHh
Confidence 988 7776666655543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-15 Score=129.35 Aligned_cols=242 Identities=11% Similarity=-0.062 Sum_probs=190.7
Q ss_pred HcCCChhHHHHHHHHhHHCCCC---CCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChH
Q 012504 178 VACDSPSDALKVFHRMKLANES---PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVE 254 (462)
Q Consensus 178 ~~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (462)
...|++++|+..|+++.+.... .+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457888999999988875321 145677788888899999999999999998876 556788889999999999999
Q ss_pred HHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 255 KAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 255 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
+|.+.|++..+ .+..++..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998874 35678999999999999999999999999885 34444444445555777999999999988876
Q ss_pred hcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 332 VYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE-PN-----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 332 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
. .+++...+. ++..+...++.++|.+.++++... |. ...+..+...+...|++ +.|...++++.+..|++
T Consensus 173 ~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 173 K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL-DSATALFKLAVANNVHN 248 (275)
T ss_dssp H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCTT
T ss_pred c--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCchh
Confidence 4 344444444 677788888999999999887543 21 57788899999999999 99999999999999877
Q ss_pred CchHHHHHHHHhhcCCHHHHHHHH
Q 012504 406 GANYVLAASVSSLSGNWDTAAELM 429 (462)
Q Consensus 406 ~~~~~~l~~~~~~~g~~~~A~~~~ 429 (462)
... .+.++...|++++|++.+
T Consensus 249 ~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHH---HHHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHHhhHHHH
Confidence 543 466778889999998876
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-17 Score=157.46 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=97.4
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhcc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMR-------EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISF 306 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 306 (462)
..-..+|+++|++|++.|++++|.++|.+|. .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445678888888888888888888886654 478888888888888888888888888888888888888888
Q ss_pred HHHHHHhhccCc-HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 307 SAILSACSHLGL-VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 307 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
+++|.++++.|+ .++|.++|++|... |+.||..+|++++....+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHH
Confidence 888888888887 47788888888887 88888888888876665543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-17 Score=159.82 Aligned_cols=121 Identities=9% Similarity=0.096 Sum_probs=108.7
Q ss_pred cchHhHHHHHHHhcCChhHHHHHHhcCC-------CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 012504 136 KYIGNTLLRMYAACKEIDVAKAVFEEMP-------VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSL 208 (462)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 208 (462)
..+|++||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997653 689999999999999999999999999999999999999999999
Q ss_pred HHHHhcccch-HhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHH
Q 012504 209 VSACTSLINV-RAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKA 256 (462)
Q Consensus 209 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 256 (462)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 9999999985 78999999999999999999999998777664333333
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-14 Score=130.94 Aligned_cols=372 Identities=7% Similarity=-0.037 Sum_probs=179.9
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCCH---HHHHHHhccCCCCCCcccHHHHHHHHHhCC-
Q 012504 6 IETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSISL---HFTRSLFNNLPVTPPLFAYNTLIRAYAKTS- 80 (462)
Q Consensus 6 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~---~~A~~~~~~~~~~~~~~~y~~li~~~~~~g- 80 (462)
+...+-..|+++.|.++++...+.|-. + .+..+- ++...|+. ++|...|++.... +..++..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~-~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS-E--AQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-T--GGGTCC-----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCC
Confidence 445555668999999999998888732 2 222222 22334444 8899999888764 7778888877666555
Q ss_pred ----CchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchh---HHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh-
Q 012504 81 ----CSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGI---GGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI- 152 (462)
Q Consensus 81 ----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 152 (462)
++++|+..|+...+.|. ...+..+...|...+..+. +.+.+......| +......|...|...+.+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 67889999999888663 3356666666665554333 344444444444 344555666666666633
Q ss_pred ---hHHHHHHhcCCCCChhhHHHHHHHHHcCC---ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcc----cchHhHH
Q 012504 153 ---DVAKAVFEEMPVRDVVSWSSMIAGFVACD---SPSDALKVFHRMKLANESPNSVTLVSLVSACTSL----INVRAGE 222 (462)
Q Consensus 153 ---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~ 222 (462)
+.+..+++.....++.++..|...|...| +.++|++.|++..+.| .++...+..+...|... ++.++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 33444444444445556666666666666 6666666666665554 23333333444444332 3444555
Q ss_pred HHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCC
Q 012504 223 SIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISG-L--ADNGRGNYAISLFAKMIQTGL 299 (462)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~ 299 (462)
..|+.. ...++..+..+... + ...+++++|.+.|++..+.|
T Consensus 238 ~~~~~a-----------------------------------a~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g- 281 (452)
T 3e4b_A 238 ALLEKI-----------------------------------APGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD- 281 (452)
T ss_dssp HHHHHH-----------------------------------GGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHH-----------------------------------cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-
Confidence 554444 41223333444333 2 23455555555555555543
Q ss_pred CCCHHHHHHHHHHhhccC-----cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC
Q 012504 300 KPDSISFSAILSACSHLG-----LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AGLIEEAYHIIRNMPTEPN 370 (462)
Q Consensus 300 ~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~ 370 (462)
+...+..+...|. .| ++++|..+|++.. +-+...+..|...|.. ..++++|.+.|++.....+
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 3334444444443 23 5555555555543 2234444445544444 2256666666655543333
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 371 AVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 371 ~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
......|...|.. ..+. ..|..+++++.+.++.+.......+......++..+|.++.++-.
T Consensus 354 ~~A~~~Lg~~y~~G~g~~~d~-~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 354 NSADFAIAQLFSQGKGTKPDP-LNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp TTHHHHHHHHHHSCTTBCCCH-HHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444444444442 2355 666666666665544332222222222222344555555555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-14 Score=133.28 Aligned_cols=345 Identities=10% Similarity=-0.032 Sum_probs=236.9
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCc---hhHHHHHHHHHHhCCCCccchHhHHHHHHH
Q 012504 71 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLI---GIGGSVHSLIFKVGLDSDKYIGNTLLRMYA 147 (462)
Q Consensus 71 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (462)
.+...+.+.|++++|+++|+...+.| +...+..+-..+...|+. ++|..+|+...+. ++..+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677888999999999999998876 344455555666667777 8999999988855 4455566666555
Q ss_pred hcC-----ChhHHHHHHhcCCCC-ChhhHHHHHHHHHcCCChh---HHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccch
Q 012504 148 ACK-----EIDVAKAVFEEMPVR-DVVSWSSMIAGFVACDSPS---DALKVFHRMKLANESPNSVTLVSLVSACTSLINV 218 (462)
Q Consensus 148 ~~~-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 218 (462)
..+ ++++|...|++...+ +..++..|...|...+..+ ++.+.+......| +......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 555 778999999887654 5567888888888776544 4455555555444 345566677777777766
Q ss_pred HhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC---ChHHHHHHHhhccCCC---hhhHHHHHHHHHHc----CChHHHH
Q 012504 219 RAGESIHSYAVVNGLELDVALGTALVEMYSKCG---HVEKAFKVFNLMREKN---LQSWTIMISGLADN----GRGNYAI 288 (462)
Q Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~----~~~~~a~ 288 (462)
+.+......+.+.-...++..+..|..+|...| +.++|++.|++..+.+ ...+..+...|... +++++|.
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 655555444443333344458888999999999 8999999999877533 33446677777655 7999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-h--hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-----CHHHHHH
Q 012504 289 SLFAKMIQTGLKPDSISFSAILSA-C--SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG-----LIEEAYH 360 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~ 360 (462)
.+|++.. .| +...+..+... + ...+++++|..+|++..+. + +...+..|...|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999987 33 44555555555 3 4689999999999999874 4 5667778888887 55 9999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCCHHHHHHHHHHH
Q 012504 361 IIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL----SGNWDTAAELMVAI 432 (462)
Q Consensus 361 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 432 (462)
.|++.. +.++..+..|...|.. ..+. ++|..+++++.+. .++.....|+.+|.. ..+..+|...|+..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~-~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYP-QKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCH-HHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCH-HHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 999998 7788888888877776 3488 9999999998874 456788999999875 46999999999999
Q ss_pred hcCCCc
Q 012504 433 NQKGLN 438 (462)
Q Consensus 433 ~~~~~~ 438 (462)
.+.|..
T Consensus 385 ~~~g~~ 390 (452)
T 3e4b_A 385 KAQDTP 390 (452)
T ss_dssp HTTCCH
T ss_pred HHCCCH
Confidence 888754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-14 Score=127.04 Aligned_cols=244 Identities=11% Similarity=-0.039 Sum_probs=132.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCch--HhHHHHHHHHHH
Q 012504 171 SSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELD--VALGTALVEMYS 248 (462)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 248 (462)
......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+....++ ...+..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 334445555555555555555555432 12233455555555555555555555555554221111 122455555555
Q ss_pred hcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 012504 249 KCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
..|++++|.+.|++..+ .+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|...
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555442 233455556666666666666666666555441 22334444444122233466666666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCC---HHHHHHHHHhCCC----CCC------HHHHHHHHHHHHHcCChHHHHH
Q 012504 326 FDEMARVYNIKPTMEHYGCMVDMLGRAGL---IEEAYHIIRNMPT----EPN------AVILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~----~~~------~~~~~~l~~~~~~~~~~~~~a~ 392 (462)
++++.+. .+.+...+..+..++...|+ +++|...++++.. .|+ ...|..+...|...|++ +.|.
T Consensus 165 ~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~ 241 (272)
T 3u4t_A 165 FVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK-VKAD 241 (272)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH-HHHH
Confidence 6666543 12234555555666665555 5555555544421 122 24666778888888999 9999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 393 NLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
..++++.+..|+++.+...+.......
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 999999999998887777666555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-13 Score=121.33 Aligned_cols=224 Identities=11% Similarity=-0.021 Sum_probs=110.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc----ccchHhHHHHHHHHHHhCCCchHhHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTS----LINVRAGESIHSYAVVNGLELDVALGT 241 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (462)
+..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555555666666666666666665552 233444445555555 555555555555555543 344444
Q ss_pred HHHHHHHh----cCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--
Q 012504 242 ALVEMYSK----CGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH-- 315 (462)
Q Consensus 242 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 315 (462)
.+...|.. .+++++|+..|+ +..+.+ +...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~-------------------------------~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYS-------------------------------KACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHH-------------------------------HHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCcccCHHHHHHHHH-------------------------------HHHHcC---CccHHHHHHHHHHcCC
Confidence 45555554 555555555554 444432 33344444444444
Q ss_pred --cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 012504 316 --LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AGLIEEAYHIIRNMPTEPNAVILRSFLGACRN----HG 385 (462)
Q Consensus 316 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 385 (462)
.+++++|...|++..+. + +...+..+...|.. .+++++|.+.|++.....+...+..+...|.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 44445555444444432 1 23334444444444 44555555555444322334444445555555 55
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCCHHHHHHHHHHHhcCC
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSSL----SGNWDTAAELMVAINQKG 436 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 436 (462)
++ ++|...++++.+.+| +..+..++.+|.. .|++++|++.+++..+.+
T Consensus 201 ~~-~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NF-KEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CH-HHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cH-HHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 55 555555555555433 3344555555555 555555555555554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-14 Score=120.12 Aligned_cols=195 Identities=16% Similarity=0.012 Sum_probs=121.4
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44556666666666777777777777666542 3345566666666666777777777777666664 445556666666
Q ss_pred HHHhc-----------CChHHHHHHHhhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 246 MYSKC-----------GHVEKAFKVFNLMRE--K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 246 ~~~~~-----------~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
++... |++++|+..|++..+ | +...|..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 777777777776653 2 34567777777777777777777777777765 56667777777
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
++...|++++|...|++..+. -+.+...+..+..++.+.|++++|.+.+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777788887777777753 23346667777777777777777777776653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-13 Score=118.80 Aligned_cols=229 Identities=14% Similarity=-0.082 Sum_probs=153.3
Q ss_pred ccchHhHHHHHHHhcCChhHHHHHHhcCCCC-ChhhHHHHHHHHHc----CCChhHHHHHHHHhHHCCCCCCHHHHHHHH
Q 012504 135 DKYIGNTLLRMYAACKEIDVAKAVFEEMPVR-DVVSWSSMIAGFVA----CDSPSDALKVFHRMKLANESPNSVTLVSLV 209 (462)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 209 (462)
+...+..+...+...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4567778888999999999999999988755 56788889999999 999999999999998875 678888888
Q ss_pred HHHhc----ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh----cCChHHHHHHHhhccCC-ChhhHHHHHHHHHH
Q 012504 210 SACTS----LINVRAGESIHSYAVVNGLELDVALGTALVEMYSK----CGHVEKAFKVFNLMREK-NLQSWTIMISGLAD 280 (462)
Q Consensus 210 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~ 280 (462)
..+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+. +...+..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 99988 999999999999998865 45566666666666 56666666655554432 23334444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCHH
Q 012504 281 NGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AGLIE 356 (462)
Q Consensus 281 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 356 (462)
. ....+++++|...|++..+. .+...+..+...|.. .++++
T Consensus 159 ~-------------------------------~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 159 G-------------------------------RGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp T-------------------------------SSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred C-------------------------------CCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 0 00044555555555554432 123344445555555 55555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCC
Q 012504 357 EAYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 357 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
+|.+.|++.....+...+..+...|.. .++. ++|...++++.+.+|++
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~-~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNE-KQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCS-TTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCH-HHHHHHHHHHHHcCCHH
Confidence 555555554332234555555666666 6666 66777777766666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-14 Score=123.82 Aligned_cols=232 Identities=9% Similarity=-0.085 Sum_probs=189.1
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--CCh----hhHHHHHH
Q 012504 203 VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--KNL----QSWTIMIS 276 (462)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~ 276 (462)
..+......+...|++++|...++++.+.. +.+...+..+..+|...|++++|+..+++..+ ++. .+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566778889999999999999999875 45666888899999999999999999998875 232 34889999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHH
Q 012504 277 GLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIE 356 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 356 (462)
.+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999863 235678899999999999999999999999852 2334777777873444456999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHhhcCCHH
Q 012504 357 EAYHIIRNMPT--EPNAVILRSFLGACRNHGQ---VLYLDDNLGKLLLKLE---PEL-----GANYVLAASVSSLSGNWD 423 (462)
Q Consensus 357 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~---~~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 423 (462)
+|.+.|+++.. +.+...+..+...+...|+ . +.|...++++.+.. |+. ..++..++.+|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQ-GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSS-CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhh-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999998743 3457778888888888888 7 88999999998764 442 257888999999999999
Q ss_pred HHHHHHHHHhcCCCcc
Q 012504 424 TAAELMVAINQKGLNK 439 (462)
Q Consensus 424 ~A~~~~~~~~~~~~~~ 439 (462)
+|.+.+++..+..+..
T Consensus 239 ~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 239 KADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccH
Confidence 9999999998876543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-13 Score=117.79 Aligned_cols=133 Identities=17% Similarity=0.062 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDML 349 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (462)
+..+...+...|++++|.+.++++...+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...|
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHH
Confidence 33334444444444444444444433111221 223334444444444444444444444432 112233444444444
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 350 GRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
...|++++|...++++.. +.+...+..+...+...|+. +.|...++++.+..|+++
T Consensus 186 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 186 YKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDR-DTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTSH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHCCCCH
Confidence 444444444444444321 12333444444444444444 445555555444444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=116.71 Aligned_cols=197 Identities=13% Similarity=-0.005 Sum_probs=110.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC 313 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 313 (462)
...+..++..+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.... +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34444555555555555555555554432 233455555555555666666666666555542 22344555555556
Q ss_pred hcc-CcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHH
Q 012504 314 SHL-GLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLY 389 (462)
Q Consensus 314 ~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 389 (462)
... |++++|...++++... +..|+ ...+..+..++...|++++|...++++.. +.+...+..+...+...|++ +
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL-G 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-H
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH-H
Confidence 666 6666666666665541 22222 44555566666666666666666655422 22355556666666666666 6
Q ss_pred HHHHHHHHHHhcCC-CCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 390 LDDNLGKLLLKLEP-ELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 390 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.|...++++.+..| +++..+..++..+...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 66666666666666 555556566666666666666666666655433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-14 Score=120.23 Aligned_cols=199 Identities=9% Similarity=-0.012 Sum_probs=170.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC 313 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 313 (462)
...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56677778888888888888888887763 356788888999999999999999999998863 33677888889999
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHH
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYL 390 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 390 (462)
...|++++|..+++++... +..| +...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++ +.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY-VP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-HH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH-HH
Confidence 9999999999999999862 3445 467888899999999999999999998743 34678889999999999999 99
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 391 DDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 391 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
|...++++.+..|++...+..++.++...|++++|.++++++.+..+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999876643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=123.44 Aligned_cols=201 Identities=10% Similarity=0.042 Sum_probs=85.8
Q ss_pred HHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCC
Q 012504 207 SLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGR 283 (462)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 283 (462)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+ .+..++..+...+...|+
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp --------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 33333444444444444444444322 22333444444444444444444444444331 123344444444555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 012504 284 GNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 363 (462)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++
T Consensus 107 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 107 YKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544432 123334444445555555555555555555432 12234444445555555555555555554
Q ss_pred hCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHH
Q 012504 364 NMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLA 412 (462)
Q Consensus 364 ~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 412 (462)
++.. +.+..++..+...+...|++ +.|...++++.+..|+++.++..+
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAYKENR-EKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHccCH-HHHHHHHHHHHccCcchHHHHHHH
Confidence 4321 12344455555555555555 555555555555555554444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-13 Score=115.07 Aligned_cols=204 Identities=12% Similarity=-0.019 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHH
Q 012504 203 VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLA 279 (462)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 279 (462)
..+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.+++..+ .+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344455555555566666666665555543 33445555666666666666666666665542 24456666777777
Q ss_pred Hc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 280 DN-GRGNYAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 280 ~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
.. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHH
Confidence 77 777777777777776323333 456667777777788888888888877753 23346677778888888888888
Q ss_pred HHHHHHhCCC--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 358 AYHIIRNMPT--E-PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 358 A~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
|.+.++++.. + .+...+..+...+...|+. +.+..+++.+.+..|+++....
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA-QAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHhCCCCHHHHH
Confidence 8888877632 3 4566666677777888888 8888888888888888775544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=9.8e-14 Score=126.54 Aligned_cols=247 Identities=8% Similarity=0.043 Sum_probs=199.2
Q ss_pred ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc-hHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 166 DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN-VRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
+..+|..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|+ +++|...++++++.. +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34578888888999999999999999988853 3456788888888999996 999999999999886 56788899999
Q ss_pred HHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-cCcHH
Q 012504 245 EMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH-LGLVD 320 (462)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~ 320 (462)
.++...|++++|+..|+++.+ .+..+|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998874 45678999999999999999999999999987432 56788888888877 55546
Q ss_pred HH-----HHHHHHHHHhcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcC-------
Q 012504 321 EG-----KNYFDEMARVYNIKPTMEHYGCMVDMLGRAG--LIEEAYHIIRNMPTE-PNAVILRSFLGACRNHG------- 385 (462)
Q Consensus 321 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~------- 385 (462)
+| +..+++.... -+-+...|..+..++...| ++++|.+.+.++... .+...+..+...|...|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 5778887763 2334778888888888888 688999988887333 45677888888888764
Q ss_pred --ChHHHHHHHHHHH-HhcCCCCCchHHHHHHHHhh
Q 012504 386 --QVLYLDDNLGKLL-LKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 386 --~~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 418 (462)
.. ++|..+++++ .+.+|.....|..++..+..
T Consensus 331 ~~~~-~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDIL-NKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHH-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 25 8899999999 89999988888877776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=123.16 Aligned_cols=200 Identities=13% Similarity=0.091 Sum_probs=158.5
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3456777888899999999999999999865 356788889999999999999999999998863 336778888999
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLY 389 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 389 (462)
.+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.++++.. +.+...+..+...+...|++ +
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML-D 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-H
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH-H
Confidence 999999999999999999874 244677889999999999999999999998743 34678888999999999999 9
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 390 LDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.|...++++.+..|+++.++..++.+|...|++++|...++++.+..+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 9999999999999999999999999999999999999999999876554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-14 Score=122.96 Aligned_cols=240 Identities=10% Similarity=-0.024 Sum_probs=159.5
Q ss_pred hCCCchhHHHHHHHHHHCCCCC---CcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhH
Q 012504 78 KTSCSIESIKLFDEMLKTGLRP---DNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDV 154 (462)
Q Consensus 78 ~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 154 (462)
..|++++|++.|+.+.+..... +...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3567778888888777653211 34556666777777788888888888777765 2355677777777888888888
Q ss_pred HHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh
Q 012504 155 AKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN 231 (462)
Q Consensus 155 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 231 (462)
|...|++... .+..++..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888777652 35677888888888888888888888888774 354444444555556678888888888777766
Q ss_pred CCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 012504 232 GLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN-------LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI 304 (462)
Q Consensus 232 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 304 (462)
. +++...+. ++..+...++.++|...+.+..+.+ ..++..+...|...|++++|...|+++.... |+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 4 33444443 6666777777788888887776543 3566677777777777777777777777642 322
Q ss_pred HHHHHHHHhhccCcHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
+.....++...|++++|...+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 112233445566666666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-14 Score=132.63 Aligned_cols=263 Identities=11% Similarity=-0.017 Sum_probs=172.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCH----HHHHHHHHHHhcccchHhHHHHHHHHHHh----C-CCchHhHH
Q 012504 170 WSSMIAGFVACDSPSDALKVFHRMKLANESPNS----VTLVSLVSACTSLINVRAGESIHSYAVVN----G-LELDVALG 240 (462)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 240 (462)
+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...+++..+. + .+.....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3344556666777777777777766642 1122 34556666666777777777777666543 1 12234566
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccCC---------ChhhHHHHHHHHHHcCC-----------------hHHHHHHHHHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMREK---------NLQSWTIMISGLADNGR-----------------GNYAISLFAKM 294 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m 294 (462)
..+...|...|++++|...+++..+. ...++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 66777777777777777777665431 12356667777777777 77777777765
Q ss_pred HHC----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 295 IQT----GLKP-DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 295 ~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
.+. +..+ ...++..+...+...|++++|...+++......-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 1111 1236666777778888888888888877653211111 236777888888888888888888776
Q ss_pred CC----C----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 366 PT----E----PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL------GANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 366 ~~----~----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
.. . ....++..+...+...|++ +.|...++++.+..+.. ..++..++.+|...|++++|.+++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEF-NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 32 1 1245677778888888888 88888888888764332 33777888888889999999888887
Q ss_pred Hhc
Q 012504 432 INQ 434 (462)
Q Consensus 432 ~~~ 434 (462)
..+
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-14 Score=127.05 Aligned_cols=230 Identities=10% Similarity=0.001 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC-hHHHHHHHhhccC---CChhhHHHHHHH
Q 012504 202 SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH-VEKAFKVFNLMRE---KNLQSWTIMISG 277 (462)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~l~~~ 277 (462)
...|..+...+...|++++|...++++++.. +.+..+|+.+..++...|+ +++|+..|++..+ .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467777888889999999999999999986 6678899999999999997 9999999999874 356889999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh-cCCHH
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR-AGLIE 356 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 356 (462)
+...|++++|+..|+++++... -+...|..+..++...|++++|+..++++.+. -+-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998743 36778999999999999999999999999974 23457889999999999 66657
Q ss_pred HH-----HHHHHhCCC--CCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC-------
Q 012504 357 EA-----YHIIRNMPT--EPNAVILRSFLGACRNHG--QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG------- 420 (462)
Q Consensus 357 ~A-----~~~~~~~~~--~~~~~~~~~l~~~~~~~~--~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 420 (462)
+| ++.+++... +.+...|..+...+...| +. ++|...++++ +..|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~-~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKY-PNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGC-HHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccch-HHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 477776532 346788888888888888 68 8999999998 889999999999999999874
Q ss_pred --CHHHHHHHHHHH-hcCCC
Q 012504 421 --NWDTAAELMVAI-NQKGL 437 (462)
Q Consensus 421 --~~~~A~~~~~~~-~~~~~ 437 (462)
.+++|+++++++ .+.++
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 358999999998 66543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-14 Score=130.94 Aligned_cols=287 Identities=11% Similarity=0.005 Sum_probs=161.5
Q ss_pred chHhHHHHHHHhcCChhHHHHHHhcCCC--C-C----hhhHHHHHHHHHcCCChhHHHHHHHHhHHC----CCCC-CHHH
Q 012504 137 YIGNTLLRMYAACKEIDVAKAVFEEMPV--R-D----VVSWSSMIAGFVACDSPSDALKVFHRMKLA----NESP-NSVT 204 (462)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~ 204 (462)
..+......+...|++++|...|++... | + ..++..+...+...|++++|...+++.... +-.| ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3445556666777777777777766542 2 2 235666667777777777777777765332 1111 1335
Q ss_pred HHHHHHHHhcccchHhHHHHHHHHHHhC----CC-chHhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 012504 205 LVSLVSACTSLINVRAGESIHSYAVVNG----LE-LDVALGTALVEMYSKCGH--------------------VEKAFKV 259 (462)
Q Consensus 205 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~ 259 (462)
+..+...+...|++++|...+++..+.. -+ ....++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 5556666667777777777776665431 00 113355666666666676 6666666
Q ss_pred HhhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCcHHHHHHH
Q 012504 260 FNLMRE-----KN----LQSWTIMISGLADNGRGNYAISLFAKMIQTGL-KPD----SISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 260 ~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
+++..+ .+ ..++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 655432 11 23456666666666777777766666654210 111 12555556666666777777666
Q ss_pred HHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHHcCChHHHHHH
Q 012504 326 FDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN----AVILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 326 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
+++......-.++ ..++..+...|...|++++|.+.+++... .++ ..++..+...|...|++ +.|..
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~ 328 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH-DQAMH 328 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH-HHHHH
Confidence 6666542111111 34555666666666776666666665421 111 34555566666666666 66666
Q ss_pred HHHHHHhcCCCCC------chHHHHHHHHhhcCCHHH
Q 012504 394 LGKLLLKLEPELG------ANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 394 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~ 424 (462)
.++++.+..+... .++..++.++...|+...
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 6666666665553 234444444444444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-14 Score=125.61 Aligned_cols=265 Identities=12% Similarity=0.034 Sum_probs=191.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC----HHHHHHHHHHHhcccchHhHHHHHHHHHHh----CCC-chHhHH
Q 012504 170 WSSMIAGFVACDSPSDALKVFHRMKLANESPN----SVTLVSLVSACTSLINVRAGESIHSYAVVN----GLE-LDVALG 240 (462)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 240 (462)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++..+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445566777788888888888877653 122 245667777777888888888887776543 212 235567
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHHHHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE-----KN----LQSWTIMISGLADNGR--------------------GNYAISLF 291 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 291 (462)
..+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7788888888888888888877653 12 2367777888888888 88888888
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHH
Q 012504 292 AKMIQT----GLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHII 362 (462)
Q Consensus 292 ~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~ 362 (462)
++.... +..|. ...+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776542 11111 346777778888899999999999887653211111 347788888999999999999998
Q ss_pred HhCCC----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCCHHHHHHH
Q 012504 363 RNMPT----EPN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL------GANYVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 363 ~~~~~----~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 428 (462)
++... .++ ..++..+...+...|++ +.|...++++.+..|.. ..++..++.+|.+.|++++|...
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY-EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 87632 122 45677788899999999 99999999998764433 34788899999999999999999
Q ss_pred HHHHhcCC
Q 012504 429 MVAINQKG 436 (462)
Q Consensus 429 ~~~~~~~~ 436 (462)
+++..+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99887653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-13 Score=111.64 Aligned_cols=167 Identities=10% Similarity=0.014 Sum_probs=137.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 012504 267 NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMV 346 (462)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 346 (462)
+...|..+...|...|++++|++.|++..+... -+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 456778888888888888888888888887632 25667888888888888899988888888763 234466777778
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHH
Q 012504 347 DMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
..+...++++.|.+.+.+... +.+...+..+...+...|++ ++|...++++.+.+|.++.++..++.+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEH-DKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCc-hhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888888999999888887632 34677888888999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 012504 425 AAELMVAINQKGL 437 (462)
Q Consensus 425 A~~~~~~~~~~~~ 437 (462)
|++.|++..+.++
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999887654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-13 Score=125.47 Aligned_cols=296 Identities=9% Similarity=-0.024 Sum_probs=176.3
Q ss_pred CcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCC----cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHh
Q 012504 65 PLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPD----NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGN 140 (462)
Q Consensus 65 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (462)
....+......+...|++++|+..|+.+.+.+.. + ...+..+...+...|++++|...++.+..........
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--- 83 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ--- 83 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc---
Confidence 3444555666677777777777777777664321 2 1345555555666666666666666554331000000
Q ss_pred HHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHC----CCC-CCHHHHHHHHHHHhcc
Q 012504 141 TLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLA----NES-PNSVTLVSLVSACTSL 215 (462)
Q Consensus 141 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~ 215 (462)
.....++..+...+...|++++|...+++.... +-. ....++..+...+...
T Consensus 84 -----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 84 -----------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 001223444555555555555555555554331 000 0123555566666666
Q ss_pred cc--------------------hHhHHHHHHHHHHh----CC-CchHhHHHHHHHHHHhcCChHHHHHHHhhccC-----
Q 012504 216 IN--------------------VRAGESIHSYAVVN----GL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMRE----- 265 (462)
Q Consensus 216 ~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----- 265 (462)
|+ +++|...+.+..+. +. +....++..+...|...|++++|...+++..+
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 66 66666666655442 11 11234667777788888888888888777653
Q ss_pred CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCC
Q 012504 266 KN----LQSWTIMISGLADNGRGNYAISLFAKMIQT----GLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIK 336 (462)
Q Consensus 266 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (462)
++ ..++..+...|...|++++|...+++.... +..+. ..++..+...+...|++++|...+++......-.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 11 236777788888888888888888887643 11111 3467777788888899999998888876532111
Q ss_pred Cc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----C----CCHHHHHHHHHHHHHcCCh
Q 012504 337 PT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----E----PNAVILRSFLGACRNHGQV 387 (462)
Q Consensus 337 ~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----~~~~~~~~l~~~~~~~~~~ 387 (462)
++ ..++..+...|...|++++|.+.+++... . ....++..+...+...|+.
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 11 55777888889999999999888877521 1 1234555566666666655
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-13 Score=129.57 Aligned_cols=208 Identities=6% Similarity=-0.058 Sum_probs=170.4
Q ss_pred hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCCh-HHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHH
Q 012504 218 VRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHV-EKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAK 293 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (462)
++.+...++...... +.+...+..+..++...|++ ++|++.|++..+ .+..+|..+...|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555544332 44667777788888888888 888888887653 3467888888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcc---------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc--------CCHH
Q 012504 294 MIQTGLKPDSISFSAILSACSHL---------GLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA--------GLIE 356 (462)
Q Consensus 294 m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 356 (462)
..+. .|+...+..+...+... |++++|...+++..+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8875 46677888888889888 9999999999999874 234578888999999888 9999
Q ss_pred HHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 357 EAYHIIRNMPT-EP----NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 357 ~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
+|++.|++... .| +...|..+..+|...|++ ++|...++++.+..|+++..+..++.++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESY-GEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988743 34 788999999999999999 9999999999999999999999999999999999999976543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-13 Score=124.19 Aligned_cols=98 Identities=10% Similarity=-0.038 Sum_probs=52.5
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKP----TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EP----NAV 372 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~----~~~ 372 (462)
.+..+...+...|++++|...+++......-.. ...++..+...|...|++++|.+.+++... .+ ...
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 444455555555555555555555443211000 134455566666666666666666655421 01 133
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
++..+...|...|++ +.|...++++.++.+
T Consensus 345 ~~~~la~~~~~~g~~-~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGH-ERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccH-HHHHHHHHHHHHHHh
Confidence 555566666777777 777777777766543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=123.47 Aligned_cols=232 Identities=10% Similarity=0.052 Sum_probs=114.9
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhHHC-------CCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh------CC
Q 012504 167 VVSWSSMIAGFVACDSPSDALKVFHRMKLA-------NESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN------GL 233 (462)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 233 (462)
..++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666777777777777777777776552 11223345556666666667777777666666543 11
Q ss_pred -CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC-----------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 012504 234 -ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK-----------NLQSWTIMISGLADNGRGNYAISLFAKMIQT---- 297 (462)
Q Consensus 234 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---- 297 (462)
+....++..+...|...|++++|...+++..+. ...++..+...+...|++++|.+.++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 223445555555666666666666555544321 1123444444444455555555554444432
Q ss_pred --CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------
Q 012504 298 --GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-------- 367 (462)
Q Consensus 298 --~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------- 367 (462)
+..|. ...++..+...|...|++++|.+.++++..
T Consensus 187 ~~~~~~~-----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 187 LGPDDPN-----------------------------------VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp SCTTCHH-----------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCCCCHH-----------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 11111 123344444445555555555544444321
Q ss_pred --CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 368 --EP-------NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 368 --~~-------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
.+ ....+..+...+...+.+ ..+...++......|..+.++..++.+|.+.|++++|.+++++..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 232 SVDDENKPIWMHAEEREECKGKQKDGTSF-GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CCHHHHHHHHHHC-------CCS-CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhcCchhhHHHH-HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00 011122222333344455 5555566666666666667777777777777777777777776654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=117.47 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=53.1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN----AV 372 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~ 372 (462)
++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|...++++.. .++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4444455555555555555555554432111111 34555566666666666666666655421 011 33
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhcCC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p 403 (462)
++..+...+...|++ +.|...++++.++.+
T Consensus 305 ~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 305 ACWSLGNAYTALGNH-DQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHTCH-HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCh-HHHHHHHHHHHHHHH
Confidence 555666677777777 777777777776544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-12 Score=119.60 Aligned_cols=193 Identities=13% Similarity=0.068 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccC-----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----H
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMRE-----KN-----LQSWTIMISGLADNGRGNYAISLFAKMIQTGL-KPD----S 303 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~ 303 (462)
++..+..+|...|++++|...+++..+ ++ ..+++.+...|...|++++|...+++..+... .++ .
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 444444444455555444444444331 01 12444455555555555555555555443200 011 1
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhc---CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC---HH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVY---NI-KPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN---AV 372 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~---~~ 372 (462)
.++..+...|...|++++|...+++..... +. +....++..+...|.+.|++++|.+.+++... .++ ..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 244455555555555555555555554310 11 11244455555556666666666555555421 011 11
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 373 ILRSFLGACRNHGQ---VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 373 ~~~~l~~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.+..+...+...|+ . +.|..++++. ...|.....+..++.+|...|++++|..++++..
T Consensus 305 ~~~~l~~~~~~~~~~~~~-~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAI-QGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHTSSCCHHHH-HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHH-HHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23344445555555 4 4444444443 1222233455566666666666666666666554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-11 Score=107.85 Aligned_cols=220 Identities=11% Similarity=0.009 Sum_probs=164.4
Q ss_pred hHHHHHHHHhHHCCCCCCHHHHHHHHHHHh-------cccch-------HhHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 012504 184 SDALKVFHRMKLANESPNSVTLVSLVSACT-------SLINV-------RAGESIHSYAVVNGLELDVALGTALVEMYSK 249 (462)
Q Consensus 184 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (462)
++|..+|++..... +.+...|..++..+. ..|++ ++|..++++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888877642 345566666666654 34665 8888888888873224456688888888888
Q ss_pred cCChHHHHHHHhhccC--C-Chh-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hccCcHHHHHH
Q 012504 250 CGHVEKAFKVFNLMRE--K-NLQ-SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC-SHLGLVDEGKN 324 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~ 324 (462)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.+. ++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988775 2 233 788888888889999999999999887632 3344444333332 23689999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 325 YFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EP--NAVILRSFLGACRNHGQVLYLDDNLGKLL 398 (462)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 398 (462)
+|+...+.. +.+...|..++..+.+.|++++|..+|+++.. +| ....|..++..+...|+. +.|..+++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~-~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL-ASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH-HHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 999988742 34577888888889999999999999988743 33 466888888888889999 9999999999
Q ss_pred HhcCCCCCch
Q 012504 399 LKLEPELGAN 408 (462)
Q Consensus 399 ~~~~p~~~~~ 408 (462)
.+..|++...
T Consensus 268 ~~~~p~~~~~ 277 (308)
T 2ond_A 268 FTAFREEYEG 277 (308)
T ss_dssp HHHTTTTTSS
T ss_pred HHHccccccc
Confidence 9999886643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.7e-12 Score=115.64 Aligned_cols=229 Identities=8% Similarity=-0.018 Sum_probs=163.3
Q ss_pred HHHHHHcCCChhHHHHHHHHhHHC----CCCC-CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCC------CchHhHHH
Q 012504 173 MIAGFVACDSPSDALKVFHRMKLA----NESP-NSVTLVSLVSACTSLINVRAGESIHSYAVVNGL------ELDVALGT 241 (462)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 241 (462)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444566677777777777776542 1111 224566667777777777777777777665310 11245677
Q ss_pred HHHHHHHhcCChHHHHHHHhhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMRE-----KN----LQSWTIMISGLADNGRGNYAISLFAKMIQT----GL-KPDSISFS 307 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~ 307 (462)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888888888888888877653 11 146788888999999999999999888762 22 22355788
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcC---CCCchhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYN---IKPTMEHYGCMVDMLGRAGL---IEEAYHIIRNMPTEPN-AVILRSFLGA 380 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 380 (462)
.+...+...|++++|...+++...... -+.....+..+...|...|+ +++|+.++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888899999999999999988765421 11123345678888888998 8999999999865433 4567778889
Q ss_pred HHHcCChHHHHHHHHHHHHhcC
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~ 402 (462)
|...|++ +.|...++++.+..
T Consensus 349 y~~~g~~-~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNF-QKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHH
T ss_pred HHHCCCH-HHHHHHHHHHHHHH
Confidence 9999999 99999999988753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-10 Score=107.62 Aligned_cols=394 Identities=8% Similarity=-0.024 Sum_probs=233.7
Q ss_pred HHHHHhhcChhHHHHHHHHHHHhCCCCchhhhhhHh-hhhhcCC---HHHHHHHhccCCC----CCCcccHHHHHHHHHh
Q 012504 7 ETLIQLSKTVHHLHQLHTLFLKTSLDHNTCIISRFI-LTSLSIS---LHFTRSLFNNLPV----TPPLFAYNTLIRAYAK 78 (462)
Q Consensus 7 ~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~---~~~A~~~~~~~~~----~~~~~~y~~li~~~~~ 78 (462)
+..+...+.++.++.+++.++.. ++.+...|...+ +....++ .+.+..+|++.-. .|++..|..-+....+
T Consensus 73 i~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~ 151 (679)
T 4e6h_A 73 LKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRK 151 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 34444456777788888887766 355566666666 4444456 7888888866422 2666677766665555
Q ss_pred CCCc--------hhHHHHHHHHHH-CCC-CCCc-chHHHHHHHhh---------hhcCchhHHHHHHHHHHhCCCCccch
Q 012504 79 TSCS--------IESIKLFDEMLK-TGL-RPDN-FTYPFVVKACG---------RCLLIGIGGSVHSLIFKVGLDSDKYI 138 (462)
Q Consensus 79 ~g~~--------~~a~~~~~~m~~-~g~-~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~ 138 (462)
.++. +...++|+..+. -|. .|+. ..|...+.... ..++++.+..+|+.++......-..+
T Consensus 152 ~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~ 231 (679)
T 4e6h_A 152 KNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESM 231 (679)
T ss_dssp HSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHH
T ss_pred hcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHH
Confidence 4443 223466666554 255 4433 45555554332 23446667777777664211111122
Q ss_pred HhHHHHHHHh-------------cCChhHHHHHHhc-------CCC--------------C--C------hhhHHHHHHH
Q 012504 139 GNTLLRMYAA-------------CKEIDVAKAVFEE-------MPV--------------R--D------VVSWSSMIAG 176 (462)
Q Consensus 139 ~~~l~~~~~~-------------~~~~~~A~~~~~~-------~~~--------------~--~------~~~~~~l~~~ 176 (462)
|......--. ..+++.|...+.+ +.. | + ...|...+.-
T Consensus 232 w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~f 311 (679)
T 4e6h_A 232 WQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRW 311 (679)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHH
Confidence 2211111000 1122233333322 110 0 0 1234444433
Q ss_pred HHcCC-------ChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHH-HHHHHHHHhCCCchHhHHHHHHHHHH
Q 012504 177 FVACD-------SPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGE-SIHSYAVVNGLELDVALGTALVEMYS 248 (462)
Q Consensus 177 ~~~~~-------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (462)
--..+ ..+.+..+|++.... ++-+...|...+..+...|+.+.|. .+++...... +.+...+...+....
T Consensus 312 Ek~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee 389 (679)
T 4e6h_A 312 ESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYE 389 (679)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 22222 123345667776654 3445666666666667778888886 8888887653 556667777888888
Q ss_pred hcCChHHHHHHHhhccC-------------CC------------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 012504 249 KCGHVEKAFKVFNLMRE-------------KN------------LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS 303 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 303 (462)
+.|+++.|.++|+++.+ |+ ...|...+....+.|+.+.|..+|.++++.-..+..
T Consensus 390 ~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~ 469 (679)
T 4e6h_A 390 LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP 469 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh
Confidence 88888888888887763 21 235777777777788888899998888875111122
Q ss_pred HHHHHHHHHhhc-cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHH
Q 012504 304 ISFSAILSACSH-LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE-P----NAVILRSF 377 (462)
Q Consensus 304 ~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~----~~~~~~~l 377 (462)
..|...+..-.+ .++.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++.... | ....|...
T Consensus 470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 470 DIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333322222222 345888888888888753 344556677777777888888999998886542 3 24577777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+..-...|+. +.+..+.+++.+..|+++
T Consensus 548 ~~fE~~~G~~-~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 548 IFFESKVGSL-NSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHTCCS-HHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHcCCH-HHHHHHHHHHHHhCCCCc
Confidence 7777888888 888888888888888875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-11 Score=106.62 Aligned_cols=214 Identities=8% Similarity=0.002 Sum_probs=173.4
Q ss_pred HhHHHHHHHHHHhCCCchHhHHHHHHHHHHh-------cCCh-------HHHHHHHhhccC---C-ChhhHHHHHHHHHH
Q 012504 219 RAGESIHSYAVVNGLELDVALGTALVEMYSK-------CGHV-------EKAFKVFNLMRE---K-NLQSWTIMISGLAD 280 (462)
Q Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 280 (462)
++|..+|++.+... +.++..|..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888864 6677888888877763 5886 899999998775 2 45689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH-hcCCHHH
Q 012504 281 NGRGNYAISLFAKMIQTGLKPD-SI-SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG-RAGLIEE 357 (462)
Q Consensus 281 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 357 (462)
.|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++..+. .+++...|........ ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 444 33 7888888899999999999999999863 2344555654443322 3699999
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 358 AYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL---EPE-LGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 358 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
|.++|++... +.+...|..++..+...|+. +.|..+|+++.+. .|+ ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNED-NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998743 34678899999999999999 9999999999995 443 456888899999999999999999999
Q ss_pred HhcCCCc
Q 012504 432 INQKGLN 438 (462)
Q Consensus 432 ~~~~~~~ 438 (462)
+.+..+.
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 9877654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-12 Score=103.02 Aligned_cols=167 Identities=12% Similarity=0.036 Sum_probs=128.5
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA 312 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 312 (462)
+..+|..+...|...|++++|++.|++..+ .++.+|..+...|...|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456777778888888888888888877653 355677778888888888888888888887753 2245566667777
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHH
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYL 390 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 390 (462)
+...++++.+...+.+.... .+.+...+..+..+|.+.|++++|++.|++... +.+...|..+..+|...|++ ++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~-~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR-DE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH-HH
Confidence 78888888888888888763 234567788888888888899999888887632 34677888888889999999 99
Q ss_pred HHHHHHHHHhcCCCCC
Q 012504 391 DDNLGKLLLKLEPELG 406 (462)
Q Consensus 391 a~~~~~~~~~~~p~~~ 406 (462)
|...++++.+.+|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999998888653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=116.80 Aligned_cols=247 Identities=11% Similarity=0.054 Sum_probs=165.1
Q ss_pred ccchHhHHHHHHHhcCChhHHHHHHhcCCC--------C---ChhhHHHHHHHHHcCCChhHHHHHHHHhHHC------C
Q 012504 135 DKYIGNTLLRMYAACKEIDVAKAVFEEMPV--------R---DVVSWSSMIAGFVACDSPSDALKVFHRMKLA------N 197 (462)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 197 (462)
+..++..+...+...|++++|...|+++.. . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 346788899999999999999999988764 2 2456888899999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHhcccchHhHHHHHHHHHHh------CC-CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---
Q 012504 198 ESP-NSVTLVSLVSACTSLINVRAGESIHSYAVVN------GL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK--- 266 (462)
Q Consensus 198 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 266 (462)
-.| ....+..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|.+.+++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 222 4567888889999999999999999998875 22 234567888999999999999999999887532
Q ss_pred -----C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc
Q 012504 267 -----N---LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT 338 (462)
Q Consensus 267 -----~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 338 (462)
+ ..++..+...|...|++++|...++++.+.. |+. .+...... ...++ ..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~--------~~~~~~~~--~~~~~----------~~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER--------EFGSVDDE--NKPIW----------MH 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH--------HHC--------CCHH----------HH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh--------cCCCCCcc--hHHHH----------HH
Confidence 2 2467888889999999999999999887641 000 00000000 00000 00
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPTE--PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
...+..+...+...+.+.++...++..... ....++..+...|...|++ ++|...++++.++.|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKF-EAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHhhc
Confidence 112222333344455555566666555432 2355677778888888888 8888888888876654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-10 Score=104.28 Aligned_cols=192 Identities=13% Similarity=0.023 Sum_probs=83.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC----------C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHH
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE----------K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLK--P--DSIS 305 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~ 305 (462)
..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3444445555555555555544331 0 0123334444555555555555555555432111 0 1123
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHH-----HHHHHHHhcCCHHHHHHHHHhCCCC-CC-----HHHH
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYG-----CMVDMLGRAGLIEEAYHIIRNMPTE-PN-----AVIL 374 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~ 374 (462)
+..+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.... |. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 44444445555555555555555543211111100111 1222344555555555555554321 10 1233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPEL------GANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
..+...+...|++ +.|...++++....+.. ..++..++.++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~-~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEF-EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444555555555 55555555554432111 1234444555555555555555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-12 Score=104.36 Aligned_cols=158 Identities=16% Similarity=0.037 Sum_probs=86.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 275 ISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcC
Confidence 333444444444444444333221 112334444444444444555555555444432 12234444555555555555
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHH
Q 012504 355 IEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 355 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
+++|.+.++++.. +.+...+..+...+...|++ +.|...++++.+..|+++.++..++.++...|++++|...++..
T Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRF-DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554421 23455666666677777777 77777777777777777777777777777777777777777776
Q ss_pred hcCC
Q 012504 433 NQKG 436 (462)
Q Consensus 433 ~~~~ 436 (462)
.+..
T Consensus 171 ~~~~ 174 (186)
T 3as5_A 171 NELD 174 (186)
T ss_dssp HHHH
T ss_pred HHcC
Confidence 6543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.4e-12 Score=122.53 Aligned_cols=161 Identities=18% Similarity=0.213 Sum_probs=122.4
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHH
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCM 345 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 345 (462)
..+|+.+...|.+.|++++|++.|++..+. .| +...+..+..++.+.|++++|+..|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 346677777777777777777777777765 33 3557777777777778888888877777753 343 6677778
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHH
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 423 (462)
..+|.+.|++++|++.|++... +.+...|..+..+|...|++ ++|+..++++.+++|+++.++..++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~-~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI-PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 8888888888888888877632 34567788888888888888 88888888888888888888888888888888888
Q ss_pred HHHHHHHHHhc
Q 012504 424 TAAELMVAINQ 434 (462)
Q Consensus 424 ~A~~~~~~~~~ 434 (462)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=112.83 Aligned_cols=193 Identities=13% Similarity=0.038 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccC-----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CH
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMRE-----KN-----LQSWTIMISGLADNGRGNYAISLFAKMIQT----GLKP-DS 303 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 303 (462)
++..+..+|...|+++.|...+++..+ ++ ..+++.+...|...|++++|.+.+++..+. +..+ ..
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 222 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA 222 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 444445555555555555544444331 11 124445555555556666555555555432 1111 12
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhc---CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC------CCC-HHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVY---NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT------EPN-AVI 373 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~-~~~ 373 (462)
.++..+..+|...|++++|...+++..... +.+....++..+...|.+.|++++|...+++... .|. ...
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 244555555666666666666666555410 1111244555566666666666666666655411 111 223
Q ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 374 LRSFLGACRNHGQ---VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 374 ~~~l~~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
+..+...+...++ . ..|...+++. ...|.....+..++..|...|++++|...+++..
T Consensus 303 ~~~l~~ly~~~~~~~~~-~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 303 FLFLQAVYKETVDERKI-HDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHSSSCCHHHH-HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHH-HHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444445555 4 4444444431 1122223355566777777777777777766654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-09 Score=106.60 Aligned_cols=416 Identities=7% Similarity=-0.020 Sum_probs=277.9
Q ss_pred HHHHHHHHHhCCCCchhhhhhHh-hhhhcCCHHHHHHHhccCCCC--CCcccHHHHHHHHHhCCC---chhHHHHHHHHH
Q 012504 20 HQLHTLFLKTSLDHNTCIISRFI-LTSLSISLHFTRSLFNNLPVT--PPLFAYNTLIRAYAKTSC---SIESIKLFDEML 93 (462)
Q Consensus 20 ~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~A~~~~~~~~~~--~~~~~y~~li~~~~~~g~---~~~a~~~~~~m~ 93 (462)
...++.-+... +.|...|..++ .+...+.++.++.+|+++-.. .+...|..-+..-.+.|+ ++.+.++|++.+
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 44455555554 46889999999 666667999999999876422 355567788888888888 999999999998
Q ss_pred HCC-CCCCcchHHHHHHHhhhhcCc--------hhHHHHHHHHHHh-CC-CCc-cchHhHHHHHHHh---------cCCh
Q 012504 94 KTG-LRPDNFTYPFVVKACGRCLLI--------GIGGSVHSLIFKV-GL-DSD-KYIGNTLLRMYAA---------CKEI 152 (462)
Q Consensus 94 ~~g-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~~~~ 152 (462)
... ..|+...|...+.-..+.++. +...++|+.++.. |. .++ ...|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 863 147888888877766665554 3344777776653 55 554 3577777765432 3457
Q ss_pred hHHHHHHhcCCC-C--Ch-hhHH---HHHHHHHcC----------CChhHHHHHHHHhHH--CCC----C----------
Q 012504 153 DVAKAVFEEMPV-R--DV-VSWS---SMIAGFVAC----------DSPSDALKVFHRMKL--ANE----S---------- 199 (462)
Q Consensus 153 ~~A~~~~~~~~~-~--~~-~~~~---~l~~~~~~~----------~~~~~a~~~~~~m~~--~~~----~---------- 199 (462)
+.+..+|++... | +. .+|. .+....... .+++.|...+.++.. .++ +
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 788999988874 2 11 2332 333322100 011223334433221 011 1
Q ss_pred -C-----CH---HHHHHHHHHHhccc-------chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHH-HHHhh
Q 012504 200 -P-----NS---VTLVSLVSACTSLI-------NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAF-KVFNL 262 (462)
Q Consensus 200 -p-----~~---~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~ 262 (462)
| +. ..|...+.---..+ ..+.+..+|++.+... +.....|...+..+...|+.++|. ++|++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 00 12333332221111 1234566788887764 667888888888888999999996 99988
Q ss_pred ccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHhhccCc
Q 012504 263 MRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGL---------KPD------------SISFSAILSACSHLGL 318 (462)
Q Consensus 263 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~ll~~~~~~~~ 318 (462)
... .+...|-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|+
T Consensus 370 Ai~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 370 GQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 764 3445677788888899999999999999986410 132 2357777777778899
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc-CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 319 VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA-GLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
.+.|..+|....+. ...+....|...+..-.+. ++.+.|.++|+.... +.+...|...+......|+. +.|..+|
T Consensus 450 l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~-~~AR~lf 527 (679)
T 4e6h_A 450 LAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE-SQVKSLF 527 (679)
T ss_dssp HHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH-HHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH-HHHHHHH
Confidence 99999999999864 1222344454444333344 458999999998743 33566777888888889999 9999999
Q ss_pred HHHHhcCCC---CCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 396 KLLLKLEPE---LGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 396 ~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
+++....|+ ....|...+..-...|+.+.+.++.+++.+..+..
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999998774 34577888888888999999999999998776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=103.86 Aligned_cols=192 Identities=11% Similarity=-0.040 Sum_probs=137.6
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMRE----KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKP-DSISFSAI 309 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 309 (462)
.++..+......+...|++++|+..|++..+ ++...+..+..++...|++++|+..+++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3556777788888888888888888887663 55666666888888888888888888888875 33 34577778
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC---HHHHHHHH
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTM-------EHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN---AVILRSFL 378 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~---~~~~~~l~ 378 (462)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|++.|+++.. .|+ ...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 888888888888888888887642 2233 4577777788888888888888887654 344 45566666
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+|. ..+...++++..+.+.++..+... .....+.+++|+..+++..+..+.
T Consensus 161 ~~~~------~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 161 VLFY------NNGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHH------HHHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHH------HHHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 6664 334455667777766664444333 344567789999999999876654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-10 Score=105.33 Aligned_cols=227 Identities=10% Similarity=0.009 Sum_probs=162.1
Q ss_pred HHHHHHcCCChhHHHHHHHHhHHCCC-CCC----HHHHHHHHHHHhcccchHhHHHHHHHHHHhCC-----C-chHhHHH
Q 012504 173 MIAGFVACDSPSDALKVFHRMKLANE-SPN----SVTLVSLVSACTSLINVRAGESIHSYAVVNGL-----E-LDVALGT 241 (462)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 241 (462)
....+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+.+..+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888888877654310 122 34566777778888888888888877765311 1 1245677
Q ss_pred HHHHHHHhcCChHHHHHHHhhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMRE-----KN----LQSWTIMISGLADNGRGNYAISLFAKMIQ-----TGLKPDSISFS 307 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 307 (462)
.+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 788888888888888888877653 12 24677788888899999999999988876 32 22356778
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDMLGRAGL---IEEAYHIIRNMPTEPN-AVILRSFLGA 380 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 380 (462)
.+...+.+.|++++|...+++......-..+ ...+..+...|...++ +.+|+..+++....|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888899999999999999988765322112 3455666677777888 8889999988654333 3456678888
Q ss_pred HHHcCChHHHHHHHHHHHHhc
Q 012504 381 CRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~ 401 (462)
|...|++ +.|...++++.+.
T Consensus 346 y~~~g~~-~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHF-EQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCH-HHHHHHHHHHHHH
T ss_pred HHHCCCH-HHHHHHHHHHHHH
Confidence 9999999 9999999988753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-11 Score=113.25 Aligned_cols=207 Identities=14% Similarity=-0.023 Sum_probs=123.7
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccch-HhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHh
Q 012504 183 PSDALKVFHRMKLANESPNSVTLVSLVSACTSLINV-RAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFN 261 (462)
Q Consensus 183 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 261 (462)
+++++..++...... +.+...+..+..++...|++ ++|...+++..+.. +.+...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444554443321 23455555666666666666 66666666666654 3345566666666666666666666666
Q ss_pred hccC--CChhhHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc--------CcHHHH
Q 012504 262 LMRE--KNLQSWTIMISGLADN---------GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL--------GLVDEG 322 (462)
Q Consensus 262 ~~~~--~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------~~~~~a 322 (462)
+..+ |+...+..+...+... |++++|...+++..+.. +-+...+..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 6553 3445566666666666 66777777777766642 22455666666666666 667777
Q ss_pred HHHHHHHHHhcCCC---CchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 012504 323 KNYFDEMARVYNIK---PTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLG 395 (462)
Q Consensus 323 ~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~ 395 (462)
...|++..+. . + .+...|..+..+|...|++++|.+.|++... +.+...+..+...+...|+. ++|...+
T Consensus 241 ~~~~~~al~~-~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~-~eAi~~~ 315 (474)
T 4abn_A 241 LSAYAQAEKV-D-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL-TSLLESK 315 (474)
T ss_dssp HHHHHHHHHH-C-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HHHHHHHHHh-C-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 7777776653 1 1 2466666777777777777777777766522 23455566666666666666 5555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=8.3e-11 Score=95.82 Aligned_cols=168 Identities=9% Similarity=-0.018 Sum_probs=143.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSAC 313 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 313 (462)
...+..+...+...|++++|...++++.+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456677888899999999999999998753 56788889999999999999999999998863 33567888888899
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHH
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLD 391 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a 391 (462)
...|++++|...++++... .+.+...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++ +.|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH-EEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCH-HHH
Confidence 9999999999999999874 345678888999999999999999999988732 34678888999999999999 999
Q ss_pred HHHHHHHHhcCCCCCch
Q 012504 392 DNLGKLLLKLEPELGAN 408 (462)
Q Consensus 392 ~~~~~~~~~~~p~~~~~ 408 (462)
...++++.+..|++...
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 164 LPHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHHcCCCchhh
Confidence 99999999988887643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-09 Score=100.39 Aligned_cols=225 Identities=8% Similarity=-0.127 Sum_probs=119.0
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHCCCCCCcc----hHHHHHHHhhhhcCchhHHHHHHHHHHhCCCC-cc----chHhH
Q 012504 71 TLIRAYAKTSCSIESIKLFDEMLKTGLRPDNF----TYPFVVKACGRCLLIGIGGSVHSLIFKVGLDS-DK----YIGNT 141 (462)
Q Consensus 71 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 141 (462)
.....+...|++++|...++.........+.. .+..+...+...|+++.|...+++........ +. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34455667889999999998887754222221 34445556677788888888888776542111 11 22345
Q ss_pred HHHHHHhcCChhHHHHHHhcCCC----------C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCC--C--CHHHHH
Q 012504 142 LLRMYAACKEIDVAKAVFEEMPV----------R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANES--P--NSVTLV 206 (462)
Q Consensus 142 l~~~~~~~~~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~ 206 (462)
+...+...|++++|...+++... + ...++..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 55666667777776666655431 1 1123444555666666666666666665442111 1 123444
Q ss_pred HHHHHHhcccchHhHHHHHHHHHHhCCCch--HhHHH----HHHHHHHhcCChHHHHHHHhhccCCCh-------hhHHH
Q 012504 207 SLVSACTSLINVRAGESIHSYAVVNGLELD--VALGT----ALVEMYSKCGHVEKAFKVFNLMREKNL-------QSWTI 273 (462)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~ 273 (462)
.+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++...... ..+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 555555666666666666665554311111 01111 122334555666666666655543211 12334
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 012504 274 MISGLADNGRGNYAISLFAKMI 295 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~ 295 (462)
+...+...|++++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-10 Score=95.00 Aligned_cols=203 Identities=9% Similarity=0.004 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHH
Q 012504 202 SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGL 278 (462)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 278 (462)
+..+......+...|++++|...+++..+...+++...+..+..++...|++++|+..|++..+. +..+|..+...|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 34444555555555555555555555555542244444444566666666666666666655432 234566666666
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc---hhHHHHHHHH
Q 012504 279 ADNGRGNYAISLFAKMIQTGLKPDS-------ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT---MEHYGCMVDM 348 (462)
Q Consensus 279 ~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~ 348 (462)
...|++++|...+++..+... .+. ..|..+...+...|++++|...|++..+ ..|+ ...+..+..+
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHHH
Confidence 666677777776666665421 123 3455566666777788888888877764 3443 4566667777
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 349 LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
|...|+. .++++.. ..+...+.... ....+.+ +.|...++++.++.|+++.+...+..+.
T Consensus 163 ~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~-~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 163 FYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAF-KKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 6655432 2222211 22344443333 3345567 9999999999999999987777766554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-10 Score=100.94 Aligned_cols=188 Identities=9% Similarity=-0.049 Sum_probs=106.7
Q ss_pred HHHhcCChHHHHHHHhhccCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 012504 246 MYSKCGHVEKAFKVFNLMREK-----N----LQSWTIMISGLADNGRGNYAISLFAKMIQTGL---KPD--SISFSAILS 311 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~ll~ 311 (462)
.|...|++++|...|.+..+- + ..+|+.+...|...|++++|+..+++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666665555544321 1 23556666666666666666666666554210 011 235666666
Q ss_pred Hhhcc-CcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCH-----HHHHHH
Q 012504 312 ACSHL-GLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPNA-----VILRSF 377 (462)
Q Consensus 312 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-----~~~~~l 377 (462)
.|... |++++|...|++......-..+ ..++..+...|.+.|++++|+..|+++.. .+.. ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 67764 7777777777776653110111 34566777777777888888777776521 1111 145666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHh--hcCCHHHHHHHHHHHhc
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGAN-----YVLAASVSS--LSGNWDTAAELMVAINQ 434 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 434 (462)
..++...|++ +.|...++++.++.|..... +..++.++. ..+++++|+..|+.+..
T Consensus 206 g~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 206 GLCQLAATDA-VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCH-HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCH-HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 6677777888 88888888887777765432 334455553 35667777777765544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-11 Score=104.96 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=22.1
Q ss_pred CCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 403 PELGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 403 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
|..+.++..++.+|...|++++|..++++..+
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445667777777777777777777776654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-09 Score=94.95 Aligned_cols=189 Identities=13% Similarity=0.023 Sum_probs=101.1
Q ss_pred HHHHcCCChhHHHHHHHHhHHC----CCCCC-HHHHHHHHHHHhcccchHhHHHHHHHHHHhCC---Cc--hHhHHHHHH
Q 012504 175 AGFVACDSPSDALKVFHRMKLA----NESPN-SVTLVSLVSACTSLINVRAGESIHSYAVVNGL---EL--DVALGTALV 244 (462)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~ 244 (462)
..|...|++++|...|.+.... |-+++ ..+|..+..++...|++++|...+++..+... .+ ...++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666655332 21111 34566666667777777777776666654310 11 133555666
Q ss_pred HHHHhc-CChHHHHHHHhhccCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHH
Q 012504 245 EMYSKC-GHVEKAFKVFNLMREK-----N----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS------ISFSA 308 (462)
Q Consensus 245 ~~~~~~-~~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ 308 (462)
.+|... |++++|+..|++..+- + ..++..+...+...|++++|+..|++..+....... ..+..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 666664 7777776666665421 1 234556666666667777777766666654322111 13444
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCch------hHHHHHHHHHH--hcCCHHHHHHHHHhCC
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPTM------EHYGCMVDMLG--RAGLIEEAYHIIRNMP 366 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~~~~A~~~~~~~~ 366 (462)
+..++...|++++|...|++... +.|+. ..+..++.++. ..+++++|+..|+.+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 55556666666666666666652 23321 12233444443 3455666666666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-09 Score=92.39 Aligned_cols=241 Identities=12% Similarity=0.017 Sum_probs=167.6
Q ss_pred HHHHHhcCChhHHHHHHhcCCCCChh-hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhH
Q 012504 143 LRMYAACKEIDVAKAVFEEMPVRDVV-SWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAG 221 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 221 (462)
++-..-.|.+..++.-...+...+.. .-.-+.++|...|++.... .-.|....+..+...+ ..+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----H
Confidence 34455679999998877776543333 3334557888888877521 1234444444444443 222 6
Q ss_pred HHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 222 ESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK-----NLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
...+++....+ +++...+..+..++...|++++|++++.+.... +...+..+++.+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777665 445555568889999999999999999987543 346778888999999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHHh--hccC--cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012504 297 TGLKP-----DSISFSAILSAC--SHLG--LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT 367 (462)
Q Consensus 297 ~~~~p-----~~~~~~~ll~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 367 (462)
. .| +..+...+..++ ...| +..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+..
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 55 355666666663 3334 899999999998753 45433333444488899999999999876532
Q ss_pred ------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 368 ------------EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 368 ------------~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+.++.+...++......|+ .+.++++++.+..|+++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk---~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL---DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC---TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh---HHHHHHHHHHHhCCCCh
Confidence 3356677566666666675 57899999999999987
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3e-10 Score=111.94 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=121.8
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILS 311 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 311 (462)
.+...++.|..+|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..|++..+... -+...|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3456777777777777888888777777653 2456777788888888888888888888777531 24567778888
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVL 388 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 388 (462)
++...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++... +.+...+..+..++...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~- 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW- 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH-
Confidence 888888888888888887753 34 467788888888888888888888887632 33567788888888888888
Q ss_pred HHHHHHHHHHHhcC
Q 012504 389 YLDDNLGKLLLKLE 402 (462)
Q Consensus 389 ~~a~~~~~~~~~~~ 402 (462)
++|.+.++++.++.
T Consensus 162 ~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 162 TDYDERMKKLVSIV 175 (723)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.19 E-value=6.3e-09 Score=90.12 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=34.8
Q ss_pred HHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCC-CchHhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012504 186 ALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 186 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
|+..|++....+ .++..++..+..++...|++++|.+++.+.+..+. .-+...+..++.++.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444332 23333333444444445555555555544433331 1234444444555555555555555555444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-09 Score=94.25 Aligned_cols=199 Identities=12% Similarity=0.073 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHh------CC-CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC--------
Q 012504 202 SVTLVSLVSACTSLINVRAGESIHSYAVVN------GL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK-------- 266 (462)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------- 266 (462)
..++..+...+...|++++|...++++.+. +- +....++..+..+|...|++++|.+.+++..+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345556666666666666666666666544 21 223456666677777777777777776665421
Q ss_pred ---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhc---
Q 012504 267 ---NLQSWTIMISGLADNGRGNYAISLFAKMIQT------GLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVY--- 333 (462)
Q Consensus 267 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 333 (462)
...++..+...|...|++++|...++++.+. +-.|+ ..++..+...+...|++++|...+++.....
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1345666777777778888887777777654 11222 3467777778888888888888888776531
Q ss_pred ---CCCCc-hhHHHHHHHHHHhc------CCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 334 ---NIKPT-MEHYGCMVDMLGRA------GLIEEAYHIIRNMPTE-P-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 334 ---~~~~~-~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
...+. ...+..+...+... ..+..+...++..... | ...++..+...|...|++ ++|..+++++.+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKL-EAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHh
Confidence 11122 23333333333322 2344555555555432 2 345677788889999999 9999999988764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-09 Score=90.31 Aligned_cols=186 Identities=12% Similarity=-0.010 Sum_probs=125.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH-HHHHH
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE--KN----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLK-PDS-ISFSA 308 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~~ 308 (462)
...+..+...+.+.|++++|+..|+++.+ |+ ...+..+..+|...|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555667778888999999988888764 32 246777788888889999999999888875322 111 13434
Q ss_pred HHHHhhc------------------cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012504 309 ILSACSH------------------LGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPTEP 369 (462)
Q Consensus 309 ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 369 (462)
+..++.. .|++++|...|+++.+. .|+ ...+........ .....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~----~~~~~---------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVF----LKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHH----HHHHH----------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHH----HHHHH----------
Confidence 4444433 45677777777777643 232 222221111100 00000
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCC
Q 012504 370 NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG---ANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVP 441 (462)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 441 (462)
......+...+...|++ +.|...++++.+..|+++ .++..++.+|.+.|++++|++.++.+...++....
T Consensus 147 -~~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAW-VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -HHHHHHHHHHHHHcCcH-HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01123456778999999 999999999999999886 56889999999999999999999999887766544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.2e-10 Score=84.87 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=81.8
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHH
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRN 383 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 383 (462)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++.. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555666666666555542 122344555555666666666666666655421 2345566667777777
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 384 HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 384 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.|++ +.|...++++.+..|.++.++..++.++...|++++|...++++.+.+
T Consensus 82 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDY-DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777 777778877777777777777777888888888888888887776544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-09 Score=92.73 Aligned_cols=99 Identities=10% Similarity=0.003 Sum_probs=76.2
Q ss_pred CchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---C---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHH
Q 012504 234 ELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---N---LQSWTIMISGLADNGRGNYAISLFAKMIQTGL-KPD-SIS 305 (462)
Q Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~ 305 (462)
+.+...+..+...+.+.|++++|+..|+++.+. + ...+..+..+|...|++++|...|++..+... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345666777888888999999999999988752 3 45677888889999999999999999888632 222 345
Q ss_pred HHHHHHHhhc--------cCcHHHHHHHHHHHHHh
Q 012504 306 FSAILSACSH--------LGLVDEGKNYFDEMARV 332 (462)
Q Consensus 306 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~ 332 (462)
+..+..++.. .|++++|...|+++...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 6666777777 88999999999998875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-09 Score=93.47 Aligned_cols=202 Identities=12% Similarity=-0.017 Sum_probs=144.2
Q ss_pred CCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCch---HhHHHHHHHHHHhcCChHHHHHHHhhccC--C-C---hhh
Q 012504 200 PNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELD---VALGTALVEMYSKCGHVEKAFKVFNLMRE--K-N---LQS 270 (462)
Q Consensus 200 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~ 270 (462)
.+...+..+...+...|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677788888999999999999999998875 333 67888899999999999999999999874 2 1 346
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhH
Q 012504 271 WTIMISGLAD--------NGRGNYAISLFAKMIQTGLKPDS-ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEH 341 (462)
Q Consensus 271 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 341 (462)
+..+..++.. .|++++|...|+++.+.. |+. .....+ ..+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 999999999999998863 332 222111 111111110 0123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhcCCCCC
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT-EP----NAVILRSFLGACRNH----------GQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~----------~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+..+...|.+.|++++|+..|+++.. .| ....+..+..+|... |++ ++|...++++.+..|+++
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~-~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY-RRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH-HHHHHHHHHHHHHCCCCh
Confidence 55677888899999999998888632 23 245677777777766 888 999999999999999986
Q ss_pred ch---HHHHHHHHhhcCCHHH
Q 012504 407 AN---YVLAASVSSLSGNWDT 424 (462)
Q Consensus 407 ~~---~~~l~~~~~~~g~~~~ 424 (462)
.. ...+..++.+.|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 43 3344444444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.3e-10 Score=110.01 Aligned_cols=168 Identities=14% Similarity=0.012 Sum_probs=86.6
Q ss_pred hcccchHhHHHHHHHHH--------HhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHc
Q 012504 213 TSLINVRAGESIHSYAV--------VNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADN 281 (462)
Q Consensus 213 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 281 (462)
...|++++|...+++.. +.. +.+...+..+..++...|++++|++.|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45555666666665555 221 33444555555556666666666666655543 2344555555556666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 012504 282 GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHI 361 (462)
Q Consensus 282 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 361 (462)
|++++|...|++..+... -+...+..+..++...|++++ ...|++..+. -+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666555421 133455555555555566665 5556555542 122344555555566666666666666
Q ss_pred HHhCCC-CCC-HHHHHHHHHHHHHcC
Q 012504 362 IRNMPT-EPN-AVILRSFLGACRNHG 385 (462)
Q Consensus 362 ~~~~~~-~~~-~~~~~~l~~~~~~~~ 385 (462)
|+++.. .|+ ...+..+..++...+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 655532 233 344444444444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=7.4e-09 Score=79.05 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDML 349 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (462)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45566677777777788877777777653 234556666777777778888888888877653 233456677777778
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 350 GRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
...|++++|.+.++++.. +.+...+..+...+...|++ +.|...++++.+..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH-HHHHHHHHHHHccCCC
Confidence 888888888888777632 33566777777888888888 8888888888877765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-10 Score=89.48 Aligned_cols=140 Identities=11% Similarity=-0.044 Sum_probs=87.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCH
Q 012504 277 GLADNGRGNYAISLFAKMIQTGLKPD-SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLI 355 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (462)
.+...|++++|+..+...... .|+ ...+..+...|...|++++|...|++..+. -+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 334445666666666655432 222 224445566666667777777777766653 123466667777777777777
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 012504 356 EEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYL-DDNLGKLLLKLEPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 356 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 421 (462)
++|+..|++... +.+...+..+...|...|+. ++ +..+++++.++.|+++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT-DGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS-SSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777766532 23466777777777777777 54 4445677888888888777777777766664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.3e-08 Score=81.71 Aligned_cols=172 Identities=9% Similarity=-0.016 Sum_probs=128.5
Q ss_pred HHHHHhhccC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC----cHHHHHHHHHHHH
Q 012504 256 AFKVFNLMRE-KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG----LVDEGKNYFDEMA 330 (462)
Q Consensus 256 a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 330 (462)
|.+.|++..+ .++.++..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3444444332 456667777777777788888888888887764 55666667777776 6 7888888888886
Q ss_pred HhcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 012504 331 RVYNIKPTMEHYGCMVDMLGR----AGLIEEAYHIIRNMPTEPN----AVILRSFLGACRN----HGQVLYLDDNLGKLL 398 (462)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~~a~~~~~~~ 398 (462)
.. -+...+..|...|.. .+++++|.++|++.....+ +..+..|...|.. .++. +.|..+++++
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~-~~A~~~~~~A 155 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD-VKASEYFKGS 155 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH-HHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH-HHHHHHHHHH
Confidence 53 355677777777776 7888999998888765433 7788888888887 7788 9999999999
Q ss_pred HhcCCCCCchHHHHHHHHhhc-C-----CHHHHHHHHHHHhcCCC
Q 012504 399 LKLEPELGANYVLAASVSSLS-G-----NWDTAAELMVAINQKGL 437 (462)
Q Consensus 399 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 437 (462)
.+. |.++..+..|+.+|... | ++++|+..|+...+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 887 66677888888888754 3 89999999998887764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-09 Score=91.47 Aligned_cols=172 Identities=9% Similarity=-0.027 Sum_probs=127.0
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCC
Q 012504 257 FKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIK 336 (462)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 336 (462)
...+......+...+..+...+...|++++|...|++..... +-+...+..+...+...|++++|...++++... .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~ 181 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D 181 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence 334444443445566667777888888888888888887753 224567777788888888888888888887653 4
Q ss_pred CchhHHH-HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--CchHHH
Q 012504 337 PTMEHYG-CMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL--GANYVL 411 (462)
Q Consensus 337 ~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~ 411 (462)
|+..... .....+...++.++|...+++... +.+...+..+...+...|++ ++|...++++.+..|++ ...+..
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~-~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRN-EEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccH-HHHHHHHHHHHhcccccccchHHHH
Confidence 4433222 223345667777778887777632 34677888888999999999 99999999999999988 778999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHh
Q 012504 412 AASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
++.++...|+.++|...+++..
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999998887654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.6e-09 Score=101.97 Aligned_cols=160 Identities=7% Similarity=-0.021 Sum_probs=123.9
Q ss_pred cCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 250 CGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 346788999999999999999999999998863 235678888999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhc
Q 012504 327 DEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNH---GQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~~~ 401 (462)
++..+. .+.+...+..+..+|.+.|++++|.+.+++... +.+...+..+...+... |+. ++|...++++.+.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~-~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRAL-DVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTH-HHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccH-HHHHHHHHHHHhc
Confidence 999874 234578899999999999999999999998743 34678888899999999 999 9999999999999
Q ss_pred CCCCCchHHHHH
Q 012504 402 EPELGANYVLAA 413 (462)
Q Consensus 402 ~p~~~~~~~~l~ 413 (462)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988887776
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-07 Score=86.07 Aligned_cols=339 Identities=9% Similarity=-0.090 Sum_probs=198.5
Q ss_pred CCHHHHHHHhccCCCC-CCcccHHHHHHHHHhCCC-chhHHHHHHHHHHC-CCCC-CcchHHHHHHHhh----hhcCchh
Q 012504 48 ISLHFTRSLFNNLPVT-PPLFAYNTLIRAYAKTSC-SIESIKLFDEMLKT-GLRP-DNFTYPFVVKACG----RCLLIGI 119 (462)
Q Consensus 48 ~~~~~A~~~~~~~~~~-~~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~~~----~~~~~~~ 119 (462)
++.+.+..+|++.-.. |++..|..-+....+.++ .+....+|+..+.. |..| +...|...+..+. ..++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 4677777777665433 777777777766666553 34566677766653 3322 4455555555433 2456677
Q ss_pred HHHHHHHHHHhCCCCccchHhHHHHHHHh-------------cCChhHHHHHHhcCC----CCChhhHHHHHHHHHcCC-
Q 012504 120 GGSVHSLIFKVGLDSDKYIGNTLLRMYAA-------------CKEIDVAKAVFEEMP----VRDVVSWSSMIAGFVACD- 181 (462)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~- 181 (462)
+..+|+.++......-...|......-.. .+.+..|..+++.+. ..+...|...+.--...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 77777777763211111122211111000 011222232222221 113345555554332221
Q ss_pred -C-----hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHH
Q 012504 182 -S-----PSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEK 255 (462)
Q Consensus 182 -~-----~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 255 (462)
- .+.+..+|+++... .+.+...|...+..+...|+.+.|..++++.... +.+...+.... ...+.++
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~----~~~e~~~ 260 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYG----LVMDEEA 260 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH----HHTTCTH
T ss_pred cCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHH----hhcchhH
Confidence 1 24567788888775 3455677777777778889999999999999988 44444433222 2111111
Q ss_pred H-HHHHhhcc------------CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-cCcHHH
Q 012504 256 A-FKVFNLMR------------EKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH-LGLVDE 321 (462)
Q Consensus 256 a-~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 321 (462)
. ..+.+... ......|...+....+.++.+.|..+|+++ .. ..++...|......-.. .++.+.
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHH
Confidence 1 12222111 001245677777777788899999999998 32 22344444432222222 336999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 322 GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
|..+|+...+.++ .++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|+. +.+..++++...
T Consensus 339 ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~-~~~r~v~~~~~~ 412 (493)
T 2uy1_A 339 PYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSM-ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence 9999999988632 234556677887888999999999999985 3678888888877888999 999998888774
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.3e-10 Score=86.56 Aligned_cols=126 Identities=10% Similarity=-0.133 Sum_probs=105.0
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHG 385 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 385 (462)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++... +.+...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44567788999999999998864 3443 55677889999999999999999998743 457889999999999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHH-HHHHhcCCCc
Q 012504 386 QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAEL-MVAINQKGLN 438 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~ 438 (462)
++ +.|...++++.+++|+++.++..++.+|.+.|++++|.+. +++..+..+.
T Consensus 80 ~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 80 NT-DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp CH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred ch-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 99 9999999999999999999999999999999999887765 5877776543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-08 Score=99.14 Aligned_cols=183 Identities=13% Similarity=-0.004 Sum_probs=150.4
Q ss_pred HcCCChhHHHHHHHHhH--------HCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 012504 178 VACDSPSDALKVFHRMK--------LANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSK 249 (462)
Q Consensus 178 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (462)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|...++++.+.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 43 23456778888899999999999999999999876 5677889999999999
Q ss_pred cCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 250 CGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 250 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
.|++++|++.|++..+ .+...|..+..++...|++++ +..|++..+.+. -+...+..+..++...|++++|...|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999874 356789999999999999999 999999988632 25678888999999999999999999
Q ss_pred HHHHHhcCCCCc-hhHHHHHHHHHHhcC--------CHHHHHHHHHhCCC
Q 012504 327 DEMARVYNIKPT-MEHYGCMVDMLGRAG--------LIEEAYHIIRNMPT 367 (462)
Q Consensus 327 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~ 367 (462)
+++.+ +.|+ ...+..+..++...+ ++++|.+.+..+..
T Consensus 558 ~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 558 DEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp HTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred Hhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 99874 4565 677778888876644 47778888877753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.2e-09 Score=82.16 Aligned_cols=104 Identities=14% Similarity=-0.022 Sum_probs=89.0
Q ss_pred CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 334 NIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 334 ~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
.+.|+ ...+..+...+.+.|++++|...|+++.. +.+...|..+..+|...|++ ++|...|+++.++.|+++.++.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF-QQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH-HHHHHHHHHHHhhCCCCcHHHH
Confidence 34444 56777888889999999999999988743 44688889999999999999 9999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 411 LAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.++.+|...|++++|+..|++..+....
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998876643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-08 Score=82.22 Aligned_cols=134 Identities=10% Similarity=0.025 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG 317 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 317 (462)
..+..+|.+.|++++|+..|++..+ .+...+..+...+...|++++|...|++..+.. +-+...+..+..++...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 3467777777777777777777653 345677777777777788888888887777753 224556666666665444
Q ss_pred c--HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 012504 318 L--VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFL 378 (462)
Q Consensus 318 ~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~ 378 (462)
. ...+...++... ...|....+..+..++...|++++|...|++... .|+......+.
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3 334455554443 2233333444455566667788888888877543 46655544443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=8.4e-08 Score=79.69 Aligned_cols=131 Identities=6% Similarity=-0.073 Sum_probs=99.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (462)
...+..+|...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. -+.+...+..+..+|.
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 3458888999999999999999999863 225678888999999999999999999999874 2335778888888887
Q ss_pred hcCC--HHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 351 RAGL--IEEAYHIIRNMPTE-PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 351 ~~~~--~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
..|+ .+.+...++..... |....+.....++...|++ ++|...|+++.++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~-~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRY-EKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCH
Confidence 6654 45567777776532 2223444556677788999 99999999999999974
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.9e-08 Score=85.27 Aligned_cols=221 Identities=11% Similarity=0.009 Sum_probs=152.4
Q ss_pred cCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHH
Q 012504 179 ACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFK 258 (462)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 258 (462)
..|++++|.+++++..+.. +.. .+...++++.|...|.+. +..|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3567888888888776531 111 011146677766666554 456777888888888
Q ss_pred HHhhccCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhccCcHHHHHH
Q 012504 259 VFNLMREK-----N----LQSWTIMISGLADNGRGNYAISLFAKMIQTG---LKPD--SISFSAILSACSHLGLVDEGKN 324 (462)
Q Consensus 259 ~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~ll~~~~~~~~~~~a~~ 324 (462)
.|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88766531 1 2467888888999999999999998876531 1121 3467778888888 99999999
Q ss_pred HHHHHHHhcCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHHcCChHHHHH
Q 012504 325 YFDEMARVYNIKP----TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN----AVILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 325 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~~a~ 392 (462)
.|++......-.. ...++..+...|.+.|++++|++.|++... .++ ...+..++.++...|++ +.|.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~-~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY-VAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH-HHHH
Confidence 9998875421111 146788889999999999999999988732 122 23566667778888999 9999
Q ss_pred HHHHHHHhcCCCCCch-----HHHHHHHHhhcCCHHHHHHH
Q 012504 393 NLGKLLLKLEPELGAN-----YVLAASVSSLSGNWDTAAEL 428 (462)
Q Consensus 393 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 428 (462)
..++++. ..|..... ...++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 88876543 33445545 56777666553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.5e-09 Score=83.94 Aligned_cols=75 Identities=12% Similarity=-0.065 Sum_probs=53.4
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC--CchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 358 AYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL--GANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 358 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
|...+++... +.+...+..+...+...|++ ++|...++++.+..|+. +..+..++.++...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRD-EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH-HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4444444321 23467777777788888888 88888888888887764 4477788888888888888888877654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.1e-08 Score=84.60 Aligned_cols=164 Identities=10% Similarity=0.018 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC--CChhh-HHHHH
Q 012504 199 SPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE--KNLQS-WTIMI 275 (462)
Q Consensus 199 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~l~ 275 (462)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++++.. |+... .....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3444566667777778888888888888888775 55667777788888888888888888888765 33322 22223
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCH
Q 012504 276 SGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLI 355 (462)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 355 (462)
..+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33566677777888888877753 23556777777788888888888888888876521112256777777888888887
Q ss_pred HHHHHHHHh
Q 012504 356 EEAYHIIRN 364 (462)
Q Consensus 356 ~~A~~~~~~ 364 (462)
++|...|++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 777776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.92 E-value=7e-09 Score=78.43 Aligned_cols=106 Identities=7% Similarity=-0.144 Sum_probs=48.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
.+......+.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|++.+++... +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3444444444455555555555544432 122344444444444445555555444444321 223444444444444
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
..|++ ++|...|+++.+++|+++.++..+.
T Consensus 93 ~~~~~-~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREW-SKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HTTCH-HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCH-HHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 45555 4555555555555554444444433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-08 Score=96.33 Aligned_cols=147 Identities=8% Similarity=-0.078 Sum_probs=96.3
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHH
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLF 291 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (462)
.|++++|...+++..+.. +.+...+..+...+...|++++|.+.|++..+. +...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467778888888777654 445677777888888888888888888877642 4567777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 012504 292 AKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRA---GLIEEAYHIIRNM 365 (462)
Q Consensus 292 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~ 365 (462)
++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8887753 224567777778888888888888888887764 233466777788888888 8888888888776
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-07 Score=80.19 Aligned_cols=185 Identities=12% Similarity=-0.025 Sum_probs=132.4
Q ss_pred CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCc--hHhHHHHHHHHHHhcCChHHHHHHHhhccC--CC-h---hhHH
Q 012504 201 NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLEL--DVALGTALVEMYSKCGHVEKAFKVFNLMRE--KN-L---QSWT 272 (462)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~ 272 (462)
+...+..+...+...|++++|...|+++.+..... ....+..++.+|.+.|++++|+..|+++.+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667788889999999999999999874221 245778899999999999999999999874 32 2 2455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHHHHhc
Q 012504 273 IMISGLAD------------------NGRGNYAISLFAKMIQTGLKPDSI-SFSAILSACSHLGLVDEGKNYFDEMARVY 333 (462)
Q Consensus 273 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 333 (462)
.+..++.. .|++++|...|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55566554 57899999999999986 34432 2221111 001111111
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 334 NIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
.....+...|.+.|++++|+..|+++.. .|+ ...+..+..++.+.|+. +.|...++.+....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~-~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN-AQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc-HHHHHHHHHHHhhCCCchh
Confidence 1223567788899999999999998743 233 25677888999999999 9999999999998888754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.1e-07 Score=78.95 Aligned_cols=220 Identities=12% Similarity=0.052 Sum_probs=107.1
Q ss_pred ChhHHHHHHHHhHHCCCCCC-HHHHHHHHHHHhccc--chHhHHHHHHHHHHhCCCchHhHHHHHHHHH----Hhc---C
Q 012504 182 SPSDALKVFHRMKLANESPN-SVTLVSLVSACTSLI--NVRAGESIHSYAVVNGLELDVALGTALVEMY----SKC---G 251 (462)
Q Consensus 182 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 251 (462)
..++|+++++.+... .|+ ...++.--.++...| +++++...++.+.... +.+..+|+.-..++ ... +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 335677777777664 343 334555555555555 6677777776666654 44444554433333 333 4
Q ss_pred ChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc------HH
Q 012504 252 HVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGN--YAISLFAKMIQTGLKPDSISFSAILSACSHLGL------VD 320 (462)
Q Consensus 252 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~ 320 (462)
++++++++++++.+ ++..+|+.-.-.+.+.|+++ ++++.++++.+..+. |...|+.-.....+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 55666666655553 23445555555555555555 566666666554332 34444433333333333 45
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012504 321 EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE-AYHIIRNMPT-----EPNAVILRSFLGACRNHGQVLYLDDNL 394 (462)
Q Consensus 321 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~a~~~ 394 (462)
++.+.++.+... -+-|...|+.+...+.+.|+... +.++.+++.. ..++..+..+...+.+.|+. ++|.++
T Consensus 204 eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~-~~A~~~ 280 (306)
T 3dra_A 204 EELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY-NESRTV 280 (306)
T ss_dssp HHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred HHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH-HHHHHH
Confidence 555555555432 12334444444444444444222 2333333321 12344444444444444555 555555
Q ss_pred HHHHHh-cCCCCCch
Q 012504 395 GKLLLK-LEPELGAN 408 (462)
Q Consensus 395 ~~~~~~-~~p~~~~~ 408 (462)
++.+.+ .+|.....
T Consensus 281 ~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 281 YDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHTTCGGGHHH
T ss_pred HHHHHhccChHHHHH
Confidence 555443 34444333
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.7e-08 Score=77.91 Aligned_cols=156 Identities=11% Similarity=0.017 Sum_probs=102.4
Q ss_pred hHhHHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHH-Hh
Q 012504 138 IGNTLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSA-CT 213 (462)
Q Consensus 138 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~ 213 (462)
.+..+...+...|++++|+..|++... .+...+..+...+...|++++|+..|++..... |+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344566677788888888888888773 356678888888888888888888888876543 344332222111 11
Q ss_pred cccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCC-----hhhHHHHHHHHHHcCChHHHH
Q 012504 214 SLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKN-----LQSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~ 288 (462)
..++...+...+++..+.. +.+...+..+..++...|++++|...|+++.+.+ ...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334566777776654 4456677777777777777777777777765422 336677777777777777777
Q ss_pred HHHHHHHH
Q 012504 289 SLFAKMIQ 296 (462)
Q Consensus 289 ~~~~~m~~ 296 (462)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-07 Score=81.03 Aligned_cols=161 Identities=4% Similarity=-0.085 Sum_probs=119.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHH
Q 012504 273 IMISGLADNGRGNYAISLFAKMIQTGL-KPDSI----SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYG 343 (462)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 343 (462)
..+..+...|++++|...+++..+... .|+.. .+..+...+...+++++|...+++......-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999988876421 22211 2334666677778999999999998863222222 33688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------CC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------Cch
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNMP-------TE-P-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL------GAN 408 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~~-------~~-~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~ 408 (462)
.+...|...|++++|...|+++. .. + ...++..+...|...|++ +.|...++++.+..+.. +.+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y-~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY-EESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 89999999999999998888764 11 1 234778888999999999 99999999998764332 457
Q ss_pred HHHHHHHHhhcCC-HHHHHHHHHHHhc
Q 012504 409 YVLAASVSSLSGN-WDTAAELMVAINQ 434 (462)
Q Consensus 409 ~~~l~~~~~~~g~-~~~A~~~~~~~~~ 434 (462)
+..++.+|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 6999999987653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-08 Score=80.68 Aligned_cols=130 Identities=13% Similarity=-0.046 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
..+..+...+...|++++|...|++. +.|+...+..+...+...|++++|...+++.... .+.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34566778888999999999998876 3567888888889999999999999999998874 24457788889999
Q ss_pred HHhcCCHHHHHHHHHhCCC--CC----------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 349 LGRAGLIEEAYHIIRNMPT--EP----------------NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~--~~----------------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
|...|++++|.+.|+++.. +. ....+..+..++...|++ +.|...++++.+..|++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW-KKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH-HHHHHHHHHHHHcCccc
Confidence 9999999999999987632 11 236778888889999999 99999999999998876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.5e-08 Score=86.28 Aligned_cols=195 Identities=10% Similarity=-0.070 Sum_probs=100.9
Q ss_pred hcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHh
Q 012504 114 CLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRM 193 (462)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 193 (462)
.|++++|.+++++..+.... . + +...++++.|...|++ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 45566666666666554211 0 0 1113556666655543 244566667777777776665
Q ss_pred HHC----CCCC-CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCC---Cc--hHhHHHHHHHHHHhcCChHHHHHHHhhc
Q 012504 194 KLA----NESP-NSVTLVSLVSACTSLINVRAGESIHSYAVVNGL---EL--DVALGTALVEMYSKCGHVEKAFKVFNLM 263 (462)
Q Consensus 194 ~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 263 (462)
... +-.+ -..+|..+..++...|++++|...+++..+... .+ ...++..+..+|.. |++++|+..|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 432 1100 123556666666677777777777766554310 11 13455556666655 6666666666654
Q ss_pred cCC-----C----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHH
Q 012504 264 REK-----N----LQSWTIMISGLADNGRGNYAISLFAKMIQT----GLKPD-SISFSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 264 ~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
.+- + ..++..+...|...|++++|+..|++.... +..+. ...+..+..++...|++++|...|++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 421 1 234555566666666666666666665542 11111 113333444444556666666666555
Q ss_pred H
Q 012504 330 A 330 (462)
Q Consensus 330 ~ 330 (462)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-06 Score=73.71 Aligned_cols=214 Identities=9% Similarity=0.060 Sum_probs=158.2
Q ss_pred chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC--ChHHHHHHHhhccCC---ChhhHHHHHHHH----HHc---CCh
Q 012504 217 NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCG--HVEKAFKVFNLMREK---NLQSWTIMISGL----ADN---GRG 284 (462)
Q Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~---~~~~~~~l~~~~----~~~---~~~ 284 (462)
..++|......++..+ +.+..+|+.-..++...| +++++++.++.+... +..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3457788888888876 556677887778888888 899999999888753 345565554444 445 788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH--HHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC------HH
Q 012504 285 NYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVD--EGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL------IE 356 (462)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~ 356 (462)
++++.+++++.+...+ +...++.-...+.+.|.++ ++...++++.+. -+-|...|+.....+...++ ++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 8999999999886433 6667766666666667777 888888888874 24456677766666666666 88
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCCCchHHHHHHHHhhcCCHHHHHHHHHH
Q 012504 357 EAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE---PELGANYVLAASVSSLSGNWDTAAELMVA 431 (462)
Q Consensus 357 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 431 (462)
++++.++.+.. +-|...|+.+...+...|+..+....+.+++.+++ |.++.++..++.+|.+.|+.++|+++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 88888877632 45778888888888888886355667777777665 77777888899999999999999999998
Q ss_pred Hhc
Q 012504 432 INQ 434 (462)
Q Consensus 432 ~~~ 434 (462)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-08 Score=75.94 Aligned_cols=103 Identities=12% Similarity=0.058 Sum_probs=89.6
Q ss_pred CCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 335 IKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 335 ~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
+.|+ ...+......|.+.|++++|++.|++... +.+...|..+..++...|++ +.|+..++++++++|+++.+|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF-QRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH-HHHHHHHHHHHHhhhhhhHHHHH
Confidence 4455 56777888999999999999999988742 45688888999999999999 99999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 412 AASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
++.+|...|++++|++.|++..+..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 999999999999999999998876554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.8e-09 Score=80.69 Aligned_cols=97 Identities=11% Similarity=-0.018 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
...+..+...+.+.|++++|...|+++.. +.+...|..+..++...|++ ++|...++++.++.|+++..+..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY-DLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44555566666666777777766666521 33556666666666777777 7777777777777777776777777777
Q ss_pred hhcCCHHHHHHHHHHHhcCC
Q 012504 417 SLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~ 436 (462)
...|++++|+..|+...+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 77777777777776665543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.9e-08 Score=79.78 Aligned_cols=171 Identities=10% Similarity=-0.013 Sum_probs=103.6
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhc----CchhHHHHHHHHH
Q 012504 53 TRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCL----LIGIGGSVHSLIF 128 (462)
Q Consensus 53 A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 128 (462)
|.+.|++.-...+..++..+...|...+++++|++.|++..+.| ++..+..+-..+.. + ++++|..+++...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 33444433333566667777777777777777777777777654 44555555555655 5 6777777777776
Q ss_pred HhCCCCccchHhHHHHHHHh----cCChhHHHHHHhcCCCCC-----hhhHHHHHHHHHc----CCChhHHHHHHHHhHH
Q 012504 129 KVGLDSDKYIGNTLLRMYAA----CKEIDVAKAVFEEMPVRD-----VVSWSSMIAGFVA----CDSPSDALKVFHRMKL 195 (462)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~ 195 (462)
+.| +...+..|...|.. .+++++|...|++..+.+ ..++..|...|.. .+++++|+..|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 554 34455556666655 566777777776666432 4566666666666 5667777777776665
Q ss_pred CCCCCCHHHHHHHHHHHhcc-c-----chHhHHHHHHHHHHhC
Q 012504 196 ANESPNSVTLVSLVSACTSL-I-----NVRAGESIHSYAVVNG 232 (462)
Q Consensus 196 ~~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 232 (462)
. .++...+..+...|... | +.++|...++...+.|
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4 22333445555555432 2 6666666666666665
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-07 Score=83.33 Aligned_cols=162 Identities=4% Similarity=-0.094 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC--CCc--hhH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPDS-----ISFSAILSACSHLGLVDEGKNYFDEMARVYNI--KPT--MEH 341 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~ 341 (462)
+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++......- .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344456666777777777777766654222111 12233444556677788888877777642111 111 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------CC
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT----EPN-----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE------LG 406 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 406 (462)
++.+...|...|++++|...++++.. .|+ ..++..+...|...|++ ++|...++++.+..+. ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y-~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY-EESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH-HHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77777788888888888877776531 121 25677777888888888 8888888887765322 13
Q ss_pred chHHHHHHHHhhcCCHHHH-HHHHHHHh
Q 012504 407 ANYVLAASVSSLSGNWDTA-AELMVAIN 433 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 433 (462)
.++..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4677788888888888888 66666554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.81 E-value=6.1e-08 Score=77.09 Aligned_cols=126 Identities=6% Similarity=-0.096 Sum_probs=97.2
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
.+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++... +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666677778888888888877753 233566777788888888888888888877632 345778888888999
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHHHHHH--HhhcCCHHHHHHHHHHHh
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVLAASV--SSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 433 (462)
..|++ +.|...++++.+..|.+...+..+..+ +.+.|++++|++.++...
T Consensus 93 ~~~~~-~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKF-RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999 999999999999999988777554444 778899999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-06 Score=81.07 Aligned_cols=348 Identities=11% Similarity=-0.045 Sum_probs=201.2
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcC-chhHHHHHHHHHHh-CCCC-ccchHhHHHHH
Q 012504 69 YNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLL-IGIGGSVHSLIFKV-GLDS-DKYIGNTLLRM 145 (462)
Q Consensus 69 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~ 145 (462)
|...+..+-. |+++.+..+|+..+.. .|+...|...+.-..+.++ .+....+|+.++.. |..+ +..+|...+..
T Consensus 18 yer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 18 MEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 3333444433 8999999999999884 5788899888887766663 46678888888765 4333 55677777766
Q ss_pred HH----hcCChhHHHHHHhcCCC-C--Ch-hhHHHHHHHHHcC--------------CChhHHHHHHHHhHHCCCCCCHH
Q 012504 146 YA----ACKEIDVAKAVFEEMPV-R--DV-VSWSSMIAGFVAC--------------DSPSDALKVFHRMKLANESPNSV 203 (462)
Q Consensus 146 ~~----~~~~~~~A~~~~~~~~~-~--~~-~~~~~l~~~~~~~--------------~~~~~a~~~~~~m~~~~~~p~~~ 203 (462)
+. ..++++.+.++|++... | +. ..|..... +.+. +.+..|..+++.+...--..+..
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~ 173 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHH
T ss_pred HHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHH
Confidence 54 24678889999988754 2 11 12222221 1111 12223344444433210001222
Q ss_pred HHHHHHHHHhcc--c-----chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHH
Q 012504 204 TLVSLVSACTSL--I-----NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMIS 276 (462)
Q Consensus 204 ~~~~l~~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 276 (462)
.|...+.--... + ..+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++.... +.... +-.
T Consensus 174 ~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~-l~~ 250 (493)
T 2uy1_A 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMF-LSL 250 (493)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSH-HHH
T ss_pred HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHH-HHH
Confidence 343333332111 1 0344667788877754 556777888888888888888888888876543 22111 111
Q ss_pred HHHHcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHH
Q 012504 277 GLADNGRGNYAISLFAKMIQTG---------LKP---DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGC 344 (462)
Q Consensus 277 ~~~~~~~~~~a~~~~~~m~~~~---------~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 344 (462)
.|....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.. +. ...+...|..
T Consensus 251 ~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~ 324 (493)
T 2uy1_A 251 YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIY 324 (493)
T ss_dssp HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHH
T ss_pred HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHH
Confidence 23322222222 23332210 001 1134555555555677888899999888 32 1234445543
Q ss_pred HHHHHHh-cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 012504 345 MVDMLGR-AGLIEEAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 345 l~~~~~~-~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 421 (462)
....-.. .++.+.|..+|+.... -| ++..|...+......|+. +.|..+|+++. .....|...+..-...|+
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~-~~aR~l~er~~----k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE-ENARALFKRLE----KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHSC----CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 3332222 3368889888887632 12 345566667777788888 88888888872 334567777777777899
Q ss_pred HHHHHHHHHHHhc
Q 012504 422 WDTAAELMVAINQ 434 (462)
Q Consensus 422 ~~~A~~~~~~~~~ 434 (462)
.+.+..+++++.+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887663
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.2e-07 Score=75.04 Aligned_cols=131 Identities=9% Similarity=-0.086 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 012504 239 LGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGL 318 (462)
Q Consensus 239 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 318 (462)
.+..+...+...|++++|...|++...++...|..+...|...|++++|...|++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345677788899999999999999988888999999999999999999999999998864 3356788888999999999
Q ss_pred HHHHHHHHHHHHHhcCC-------------CC-chhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 012504 319 VDEGKNYFDEMARVYNI-------------KP-TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN 370 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~-------------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~ 370 (462)
+++|...|++..+...- .| ....+..+..+|.+.|++++|.+.|+++.. .|+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999874211 11 137888999999999999999999998743 344
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-08 Score=86.87 Aligned_cols=187 Identities=5% Similarity=-0.094 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS 314 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 314 (462)
..+..+...+...|++++|+..|++..+ .+...|..+...|...|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444455555555666666665555442 244555556666666666666666666655542 123445555666666
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKP---TMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLD 391 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 391 (462)
..|++++|...|++..+...-.+ ....+..+ ...+...+.. ......+.+......+.. + ..|+. +.|
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~-~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAER-ERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHH-HHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHH-HHH
Confidence 66666666666666554310000 01111111 1111111111 111222223333332322 2 25777 788
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhc-CCHHHHHHHHHHHhc
Q 012504 392 DNLGKLLLKLEPELGANYVLAASVSSLS-GNWDTAAELMVAINQ 434 (462)
Q Consensus 392 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 434 (462)
.+.++++.+..|++......+...+.+. +.+++|.++|+.+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888888887766666666666655 677888888887765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-07 Score=70.56 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGA 380 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 380 (462)
...+..+...+...|++++|...++++... .+.+...+..+...+.+.|++++|...++++.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345566666667777777777777777653 233456667777777777777777777776532 3456677777788
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG 420 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 420 (462)
+...|++ +.|...++++.+..|+++..+..++.++...|
T Consensus 87 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDY-DEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888 88888888888888888777777777765543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.9e-08 Score=72.58 Aligned_cols=115 Identities=8% Similarity=-0.096 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGAC 381 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 381 (462)
..+..+...+...|++++|...+++.... .+.+...+..+..+|...|++++|.+.++++.. +.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34555555555666666666666665532 122455556666666666666666666655422 23456667777777
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 421 (462)
...|++ +.|...++++.+..|.+...+..++.++...|+
T Consensus 95 ~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDY-TKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCH-HHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 778888 888888888888777777777777777766553
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.6e-06 Score=73.92 Aligned_cols=159 Identities=13% Similarity=0.010 Sum_probs=118.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhccCCC---h------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHH
Q 012504 242 ALVEMYSKCGHVEKAFKVFNLMREKN---L------QSWTIMISGLADNGRGNYAISLFAKMIQTGLK-PD----SISFS 307 (462)
Q Consensus 242 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~ 307 (462)
..+..+...|++++|...+++..+.. . ..+..+...+...+++++|+..+++....... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888899999999998876421 1 13334666677778999999999999874222 22 23688
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhc----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC-HHHH
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVY----NIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-------EPN-AVIL 374 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~-~~~~ 374 (462)
.+...|...|++++|...++++.+.. +..+. ..++..+...|.+.|++++|.+.+++... .+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999999999987421 11122 45788899999999999999999887632 122 6788
Q ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHHhc
Q 012504 375 RSFLGACRNHG-QVLYLDDNLGKLLLKL 401 (462)
Q Consensus 375 ~~l~~~~~~~~-~~~~~a~~~~~~~~~~ 401 (462)
..+..++...| .. +.|...++++..+
T Consensus 240 ~~lg~~~~~~g~~~-~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEE-AEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcH-HHHHHHHHHHHHH
Confidence 88899999999 57 8999999998764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=71.93 Aligned_cols=117 Identities=6% Similarity=-0.084 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGA 380 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 380 (462)
...+..+...+...|+++.|...+++.... .+.+...+..+...+...|++++|.+.+++... +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666777777777777777653 233466677777777777777777777776532 3346677778888
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCH
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNW 422 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 422 (462)
+...|++ +.|...++++.+..|+++..+..++.++.+.|++
T Consensus 90 ~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKH-VEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888 8888888888888888888888888888777764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=73.48 Aligned_cols=97 Identities=12% Similarity=-0.040 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
...+..+...+.+.|++++|...|+++.. +.+...|..+..++...|++ +.|...++++.+..|+++..+..++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY-EQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34444555566666666666666665521 23455666666666666666 6666666666666666666666666666
Q ss_pred hhcCCHHHHHHHHHHHhcCC
Q 012504 417 SLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~ 436 (462)
...|++++|++.|+...+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666665443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.1e-08 Score=70.21 Aligned_cols=100 Identities=10% Similarity=-0.082 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE--LGANYVLAAS 414 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 414 (462)
...+..+...+...|++++|...++++.. +.+...+..+...+...|++ +.|...++++.+..|. +..++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY-EEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 45666777778888888888888877632 34567788888888999999 9999999999999998 8888999999
Q ss_pred HHhhc-CCHHHHHHHHHHHhcCCCcc
Q 012504 415 VSSLS-GNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 415 ~~~~~-g~~~~A~~~~~~~~~~~~~~ 439 (462)
++... |++++|++.++...+....+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999888776544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=9e-08 Score=77.19 Aligned_cols=128 Identities=8% Similarity=0.020 Sum_probs=93.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH-HHhcCCH-
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM-LGRAGLI- 355 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~- 355 (462)
+...|++++|...+++..... +.+...+..+...+...|++++|...|++..... +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 445678888888888887763 3356778888888888888888888888887642 3356677777777 7788887
Q ss_pred -HHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchH
Q 012504 356 -EEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANY 409 (462)
Q Consensus 356 -~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 409 (462)
++|...++++.. +.+...+..+...+...|++ +.|...++++.+..|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANY-AQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccH-HHHHHHHHHHHhhCCCCccHH
Confidence 888888887632 33567777788888888888 888888888888888876433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-07 Score=78.88 Aligned_cols=121 Identities=10% Similarity=-0.071 Sum_probs=55.5
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCh
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNA----VILRSFLGACRNHGQV 387 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 387 (462)
.+...|++++|.+.|+.+... .|+......+...+.+.+++++|+..|+.....|+. ..+..+..++...|++
T Consensus 111 ~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 111 CEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 344455555555555544321 232223333344455555555555555544322211 2344444555555555
Q ss_pred HHHHHHHHHHHHhcC--CC-CCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 388 LYLDDNLGKLLLKLE--PE-LGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++...+
T Consensus 188 -~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 188 -TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp -HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55555555554321 22 22244445555555555555555555554433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-06 Score=76.29 Aligned_cols=163 Identities=12% Similarity=-0.010 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCC---Ch------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--H
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMREK---NL------QSWTIMISGLADNGRGNYAISLFAKMIQTGL---KPD--S 303 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~ 303 (462)
..+...+..+...|++++|.+.+.+..+. .. ..+..+...+...|++++|...+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455667778888888888888755421 11 2234455667778899999999888875321 112 3
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-C
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-------EP-N 370 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~-~ 370 (462)
.+++.+...|...|++++|...+++........|+ ..++..+...|.+.|++++|.+.+++... .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47778888888899999999999888732111222 25788888899999999999988887621 11 2
Q ss_pred HHHHHHHHHHHHHcCChHHHH-HHHHHHHHhc
Q 012504 371 AVILRSFLGACRNHGQVLYLD-DNLGKLLLKL 401 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a-~~~~~~~~~~ 401 (462)
..++..+...|...|+. +.| ...++++..+
T Consensus 236 ~~~~~~lg~~y~~~g~~-~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYE-EAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHH
Confidence 56778888889999999 888 7778887753
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-07 Score=70.64 Aligned_cols=96 Identities=13% Similarity=-0.036 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 012504 340 EHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSS 417 (462)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 417 (462)
..+..+...+.+.|++++|+..|++... +.+...|..+..++...|++ +.|...++++.+..|+++..+..++.++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF-PEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3455556666666666666666666522 23456666666677777777 77777777777777777767777777777
Q ss_pred hcCCHHHHHHHHHHHhcCC
Q 012504 418 LSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 418 ~~g~~~~A~~~~~~~~~~~ 436 (462)
..|++++|+..+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 7777777777776665543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-07 Score=83.27 Aligned_cols=143 Identities=12% Similarity=-0.070 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
...+..+...+.+.|++++|+..|++..... |+...+ ..+.+... .. .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~-~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKA-QA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHH-HH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHH-HH--------HHHHHHHHHHH
Confidence 3456666677777777777777777766542 211000 00111110 00 01457788888
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHH
Q 012504 348 MLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTA 425 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 425 (462)
+|.+.|++++|+..++++.. +.+...+..+..+|...|++ +.|...|+++.++.|++..++..++.++...|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF-ELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888732 34678888999999999999 9999999999999999999999999999999999998
Q ss_pred -HHHHHHHh
Q 012504 426 -AELMVAIN 433 (462)
Q Consensus 426 -~~~~~~~~ 433 (462)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 44566553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-07 Score=70.84 Aligned_cols=97 Identities=12% Similarity=-0.157 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 418 (462)
.+..+...+.+.|++++|...|+++.. +.+...|..+..++...|++ +.|+..++++.++.|+++..+..++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-GLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455667788899999999999988743 34688888899999999999 999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCc
Q 012504 419 SGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 419 ~g~~~~A~~~~~~~~~~~~~ 438 (462)
.|++++|+..+++..+.++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCcC
Confidence 99999999999998876543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.3e-07 Score=77.62 Aligned_cols=136 Identities=11% Similarity=-0.057 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHH
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT--MEHYGCMVDML 349 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 349 (462)
-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... ..|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 344566677777777777777665532 33323334444567778888888888755431 1121 23566777788
Q ss_pred HhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 350 GRAGLIEEAYHIIRNMPTE---P--NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
.+.|++++|+..|++.... | ..........++.+.|+. ++|...|+++...+|+ ..+...|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~-deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE-SAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8888888888888876322 3 233555667778888888 8888888888888887 55555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=5.4e-07 Score=70.11 Aligned_cols=100 Identities=5% Similarity=-0.080 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGAC 381 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 381 (462)
..+..+...+...|++++|...|+++... -+.+...|..+..+|...|++++|++.|+++.. +.++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 36667777888899999999999998864 234577888899999999999999999988732 34567888889999
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
...|++ ++|...|+++.++.|+++
T Consensus 115 ~~lg~~-~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAP-LKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCH-HHHHHHHHHHHHHCCCHH
T ss_pred HHcCCH-HHHHHHHHHHHHhCCCHH
Confidence 999999 999999999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-07 Score=74.22 Aligned_cols=110 Identities=7% Similarity=-0.094 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 012504 302 DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLG 379 (462)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~ 379 (462)
+...+..+...+...|++++|...|++.... .+.+...|..+..+|.+.|++++|+..|++... +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4557788888899999999999999999874 234678899999999999999999999988743 346888999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012504 380 ACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAAS 414 (462)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 414 (462)
++...|++ +.|...++++.++.|++...+...+.
T Consensus 88 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADY-KGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCH-HHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999 99999999999999999886655443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-06 Score=69.83 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQT----GLKP--DSISFSAILSACSHLGLVDEGKNYFDEMA 330 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 330 (462)
+..+...+...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444444444455555554444444322 1011 11233444444445555555555554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.5e-07 Score=68.88 Aligned_cols=95 Identities=12% Similarity=-0.120 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
...+..+...+...|++++|...|++... +.+...|..+..++...|++ +.|...++++.+..|+++.++..++.++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-EQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 44444455555555555555555544321 22344555555555555555 5555555555555555555555555555
Q ss_pred hhcCCHHHHHHHHHHHhc
Q 012504 417 SLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~ 434 (462)
...|++++|+..+++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-07 Score=70.26 Aligned_cols=96 Identities=7% Similarity=-0.118 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc-------hHH
Q 012504 340 EHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA-------NYV 410 (462)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~ 410 (462)
..+..+...+.+.|++++|++.|++... +.+...|..+..+|...|++ +.|+..+++++++.|++.. +|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKF-AECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhH-HHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3456667777777777777777776532 33566777777777777777 7777777777777665543 455
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 411 LAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 411 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
.++.++...|++++|++.|++..+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66777777788888888777766543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=7e-07 Score=66.00 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
+..+...+...|++++|...+++... +.+...+..+...+...|++ +.|...++++.+..|+++..+..++.++...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY-QKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 33344444444444444444444311 12344444444444445555 5555555555554444444444455555555
Q ss_pred CCHHHHHHHHHHHhcC
Q 012504 420 GNWDTAAELMVAINQK 435 (462)
Q Consensus 420 g~~~~A~~~~~~~~~~ 435 (462)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 5555555555444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=7e-07 Score=73.53 Aligned_cols=62 Identities=10% Similarity=-0.067 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHC----CCCC-CHHHHHHHHHHHhcccchHhHHHHHHHHH
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLA----NESP-NSVTLVSLVSACTSLINVRAGESIHSYAV 229 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 229 (462)
.++..+...+...|++++|...+++.... +..| ....+..+...+...|++++|...+++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555555555544331 1111 12233344444444445544444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=6e-07 Score=68.12 Aligned_cols=102 Identities=10% Similarity=-0.028 Sum_probs=90.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012504 336 KPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAA 413 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 413 (462)
+.+...+..+...+.+.|++++|.+.|++... +.+...+..+...+...|++ +.|...++++.+..|+++.++..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF-QLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34477888899999999999999999998643 34688899999999999999 9999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 414 SVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.++...|++++|++.+++..+....
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 9999999999999999998876543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=5.2e-07 Score=74.18 Aligned_cols=167 Identities=7% Similarity=-0.106 Sum_probs=101.3
Q ss_pred HHhcCChHHHHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 012504 247 YSKCGHVEKAFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGK 323 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 323 (462)
....|+++++.+.++.-.+. ....+..+...+...|++++|...|++..... |+...+... ....-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~~- 82 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLDK- 82 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHHH-
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHHH-
Confidence 34445555555555433321 23456666677777777777777777776642 111100000 00000
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 324 NYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
... .....+..+..+|.+.|++++|+..+++... +.+...+..+..++...|++ +.|...++++.+.
T Consensus 83 --~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 --KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL-EEAKENLYKAASL 151 (198)
T ss_dssp --HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHH
T ss_pred --HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccH-HHHHHHHHHHHHH
Confidence 000 0135677788888889999999988887632 34678888899999999999 9999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCHHHHH-HHHHHHhcC
Q 012504 402 EPELGANYVLAASVSSLSGNWDTAA-ELMVAINQK 435 (462)
Q Consensus 402 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 435 (462)
.|+++.++..++.++...|+.+++. ..+..+-..
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999888888877 555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=8.6e-05 Score=65.69 Aligned_cols=179 Identities=8% Similarity=0.005 Sum_probs=116.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc-chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHh
Q 012504 171 SSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI-NVRAGESIHSYAVVNGLELDVALGTALVEMYSK 249 (462)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 249 (462)
+.+-....+.+..++|+++++++...+ +-+...++.--.++...| +++++...++.+.... +.+..+|+.-..++..
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333334445556678999999888753 234445666556666667 5888888888888776 5677777777666666
Q ss_pred c-C-ChHHHHHHHhhccCCC---hhhHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 012504 250 C-G-HVEKAFKVFNLMREKN---LQSWTIMISGLADNGRGN--------YAISLFAKMIQTGLKPDSISFSAILSACSHL 316 (462)
Q Consensus 250 ~-~-~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 316 (462)
. + ++++++++++++.+.+ ..+|+.-.-.+.+.|+++ ++++.++++.+..+. |...|+.-...+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 6 6 7888888888888644 456655555555555555 788888888876433 556666666555555
Q ss_pred Cc-------HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC
Q 012504 317 GL-------VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL 354 (462)
Q Consensus 317 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (462)
+. ++++.+.+++.... -+-|...|+.+-..+.+.|+
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 54 56777777777653 23446666665555555544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=5.5e-07 Score=67.36 Aligned_cols=98 Identities=15% Similarity=0.093 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++ +.|...++++.+..|+++.++..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 56788889999999999999999998742 34678888999999999999 9999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHhcCCC
Q 012504 417 SLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~~ 437 (462)
...|++++|...++++.+..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhcCHHHHHHHHHHHHHhCC
Confidence 999999999999999887654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-06 Score=67.42 Aligned_cols=24 Identities=13% Similarity=-0.082 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHh
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRN 364 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~ 364 (462)
.+..+..++...|++++|.+.+++
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 333333333444444444433333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.4e-06 Score=64.35 Aligned_cols=109 Identities=10% Similarity=-0.061 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGAC 381 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 381 (462)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++... +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455555666666677777766666653 223455666666677777777777777766522 23466677777777
Q ss_pred HHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012504 382 RNHGQVLYLDDNLGKLLLKLEPELGANYVLAASV 415 (462)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 415 (462)
...|++ +.|...++++.+..|+++..+..++.+
T Consensus 83 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRF-EEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCH-HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhH-HHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888 888888888888888777666665544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-07 Score=72.13 Aligned_cols=103 Identities=8% Similarity=-0.055 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGA 380 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 380 (462)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|+..|+++.. +.++..+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345666667778888888888888888763 234577778888888888888888888887632 3456777888888
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
+...|++ ++|...++++.+..|+++..
T Consensus 99 ~~~~g~~-~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGEL-AEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCH-HHHHHHHHHHHHHCcCCCcc
Confidence 9999999 99999999999988887754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-06 Score=70.86 Aligned_cols=123 Identities=12% Similarity=0.040 Sum_probs=69.2
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH-HHHcCCh-HH
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGA-CRNHGQV-LY 389 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~-~~ 389 (462)
...|++++|...++..... .+.+...+..+...|...|++++|...|+++.. +.+...+..+..+ +...|++ .+
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666666666665543 123455666666666666666666666665532 2345555555555 4455552 15
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 390 LDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 390 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.|...++++.+..|+++.++..++.+|...|++++|...++++.+..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 6666666666666666666666666666666666666666666555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.5e-07 Score=78.58 Aligned_cols=93 Identities=9% Similarity=-0.066 Sum_probs=41.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHH
Q 012504 169 SWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYS 248 (462)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 248 (462)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444455555555555555544421 1133444444444444444444444444444332 223334444444444
Q ss_pred hcCChHHHHHHHhhc
Q 012504 249 KCGHVEKAFKVFNLM 263 (462)
Q Consensus 249 ~~~~~~~a~~~~~~~ 263 (462)
..|++++|...|++.
T Consensus 84 ~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 84 EMESYDEAIANLQRA 98 (281)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 444444444444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=8.1e-07 Score=68.58 Aligned_cols=104 Identities=12% Similarity=-0.041 Sum_probs=75.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|++... +.++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445556677778888888888877753 233566777777788888888888888877632 335566777888888
Q ss_pred HcCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 383 NHGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
..|++ +.|...++++.+..|+++.....
T Consensus 98 ~~g~~-~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 98 QLGDL-DGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HTTCH-HHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HcCCH-HHHHHHHHHHHHhCCCCcchHHH
Confidence 88888 88888888888888877755443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-06 Score=68.29 Aligned_cols=95 Identities=11% Similarity=-0.037 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
...|..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...+++.... -+.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3456666777777777777777777777653 224556667777777777777777777777653 1233666777777
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 012504 348 MLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~ 365 (462)
+|...|++++|.+.|++.
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 777777777777777665
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.5e-07 Score=66.52 Aligned_cols=109 Identities=8% Similarity=-0.173 Sum_probs=70.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACR 382 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 382 (462)
.+......+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++... +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555666667777777777766653 233456666677777777777777777766532 334666777777777
Q ss_pred HcCChHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 012504 383 NHGQVLYLDDNLGKLLLKLE------PELGANYVLAASVS 416 (462)
Q Consensus 383 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 416 (462)
..|++ +.|...++++.+.. |.+..+...+..+.
T Consensus 84 ~~~~~-~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEY-ASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCH-HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCH-HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 77888 78888888877777 66655555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.7e-06 Score=65.83 Aligned_cols=110 Identities=9% Similarity=-0.117 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRS 376 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 376 (462)
...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++... +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34455555556666666666666666653 2333 45555666666666666666666655421 234556666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
+..++...|++ +.|...++++.+..|++..++..+..+.
T Consensus 105 ~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRL-DQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCH-HHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 66667777777 7777777777777776665555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-06 Score=67.55 Aligned_cols=101 Identities=10% Similarity=-0.054 Sum_probs=89.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 337 PTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EPN----AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 337 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
.+...+..+...+...|++++|.+.|++... .|+ ...+..+...+...|++ +.|...++++.+..|+++..+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY-DKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHhhCccCHHHHHH
Confidence 3567888899999999999999999998743 465 67888889999999999 99999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 412 AASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 412 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
++.++...|++++|...+++..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999998876543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=66.44 Aligned_cols=99 Identities=13% Similarity=-0.017 Sum_probs=88.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012504 338 TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASV 415 (462)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 415 (462)
+...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++ +.|...++++.+..|+++..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY-AGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch-HHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 466788888999999999999999998742 34678888999999999999 999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHhcCCC
Q 012504 416 SSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 416 ~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+...|++++|...+++..+..+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHhCCHHHHHHHHHHHHhcCc
Confidence 9999999999999999887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00021 Score=63.17 Aligned_cols=176 Identities=7% Similarity=-0.068 Sum_probs=116.8
Q ss_pred HHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhc-CchhHHHHHHHHHHhCCCCccchHhHHHHHHHhc-C
Q 012504 73 IRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCL-LIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAAC-K 150 (462)
Q Consensus 73 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 150 (462)
-....+.+..++|+++++.++..+.. +...|+.--..+...| ++++++.+++.++...++ +..+|+.-..++... +
T Consensus 61 r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 61 RAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcC
Confidence 33344455667899999999986433 3445666666666677 589999999999887643 566777777666665 6
Q ss_pred -ChhHHHHHHhcCCCC---ChhhHHHHHHHHHcCCChh--------HHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc-
Q 012504 151 -EIDVAKAVFEEMPVR---DVVSWSSMIAGFVACDSPS--------DALKVFHRMKLANESPNSVTLVSLVSACTSLIN- 217 (462)
Q Consensus 151 -~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~- 217 (462)
++++++++++.+... |..+|+.-.-...+.|.++ ++++.++++.+.. +-|...|+.....+.+.++
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 788888888888754 4556655444444444555 7888888877754 3466677766666666654
Q ss_pred ------hHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC
Q 012504 218 ------VRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH 252 (462)
Q Consensus 218 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 252 (462)
++++.+.+.++.... +-|...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 466666666666654 5566666665555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-06 Score=65.98 Aligned_cols=100 Identities=7% Similarity=-0.206 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 012504 302 DSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLG 379 (462)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~ 379 (462)
+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++... +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556667777777777777777777777653 233466777777777788888888877777632 335677777888
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 380 ACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
++...|++ +.|...++++.+..|+
T Consensus 86 ~~~~~~~~-~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESY-DEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhH-HHHHHHHHHHHHHChh
Confidence 88888888 8888888888887776
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.7e-06 Score=77.10 Aligned_cols=162 Identities=5% Similarity=-0.127 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHHHHhc---CCCCc-hhH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQT-GLKPDS----ISFSAILSACSHLGLVDEGKNYFDEMARVY---NIKPT-MEH 341 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~ 341 (462)
+..++..|...|++++|.+.+.++... +..++. ...+.+...+...|+.+.+..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556677777777777777777766542 111121 122333344556678888888777765321 12222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC---CCC----C
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT-------EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE---PEL----G 406 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~ 406 (462)
+..+...|...|++++|..+++++.. ++ ...++..++..|...|++ +.|..+++++.... +.+ .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNL-AKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77788888888888888888876521 12 245677778888889999 88988888887643 222 1
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
..+..++..+...|++++|...+.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345667777888899998888776654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-06 Score=65.61 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=57.4
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCch---hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-C---HHHHHHHHHH
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPTM---EHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-N---AVILRSFLGA 380 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~---~~~~~~l~~~ 380 (462)
+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|+++.. .| + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4445566677777777777666531 1122 3555666666666677776666666522 12 2 4455556666
Q ss_pred HHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 381 CRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 381 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
+...|++ +.|...++++.+..|+++..
T Consensus 86 ~~~~g~~-~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 86 QYGEGKN-TEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHTTCH-HHHHHHHHHHHHHSTTSHHH
T ss_pred HHHcCCH-HHHHHHHHHHHHHCCCChHH
Confidence 6666666 66666666666666665533
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-06 Score=82.16 Aligned_cols=119 Identities=7% Similarity=-0.103 Sum_probs=96.8
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCC
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQ 386 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 386 (462)
+...+...|++++|...+++..+. -+.+...|..+..+|.+.|++++|++.+++... +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334566788999999999988864 233478888899999999999999999988632 3467888899999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCchHHHHHHH--HhhcCCHHHHHHHHH
Q 012504 387 VLYLDDNLGKLLLKLEPELGANYVLAASV--SSLSGNWDTAAELMV 430 (462)
Q Consensus 387 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 430 (462)
+ ++|...++++.+..|++...+..++.+ +.+.|++++|++.++
T Consensus 90 ~-~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 F-RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp H-HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred H-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9 999999999999999999999988888 888999999999988
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.35 E-value=5e-06 Score=77.96 Aligned_cols=142 Identities=8% Similarity=-0.066 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
..|..+...+.+.|++++|+..|++..+.. |+...+ . .+... ... +.....|..+..+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~----~~~-----~~~~~~~~nla~~ 326 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK----ASE-----SFLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH----HHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH----HHH-----HHHHHHHHHHHHH
Confidence 456666667777777777777777766531 111000 0 00000 000 0114578888899
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHH
Q 012504 349 LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 426 (462)
|.+.|++++|+..++++.. +.+...|..+..+|...|++ +.|...|++++++.|++..++..++.++.+.|+++++.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF-ESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988743 34688888999999999999 99999999999999999999999999999999998877
Q ss_pred H-HHHHHh
Q 012504 427 E-LMVAIN 433 (462)
Q Consensus 427 ~-~~~~~~ 433 (462)
+ .++.|-
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 455553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.6e-06 Score=68.53 Aligned_cols=103 Identities=15% Similarity=0.022 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC----------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 303 SISFSAILSACSHLGLVDEGKNYFDEMARVYN----------------IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 303 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
...+......+.+.|++++|...|........ -+.+...|..+..+|.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556666677777777777777777765300 01113445555555556666666665555542
Q ss_pred C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 367 T--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 367 ~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
. +.+...|..+..++...|++ +.|...++++.++.|+++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~-~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKL-DEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcH-HHHHHHHHHHHhcCCCCH
Confidence 1 23455555555556666666 666666666666655554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00011 Score=64.65 Aligned_cols=128 Identities=10% Similarity=0.052 Sum_probs=67.8
Q ss_pred HcCCChh-HHHHHHHHhHHCCCCCCHH-HHHHHHHHHhcccc----------hHhHHHHHHHHHHhCCCchHhHHHHHHH
Q 012504 178 VACDSPS-DALKVFHRMKLANESPNSV-TLVSLVSACTSLIN----------VRAGESIHSYAVVNGLELDVALGTALVE 245 (462)
Q Consensus 178 ~~~~~~~-~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 245 (462)
.+.|.++ +|+.+++.+... .|+.. .++.--..+...+. ++++..+++.+.... +.+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455554 788888888774 34433 34433333322222 455566666666554 445556655555
Q ss_pred HHHhcC--ChHHHHHHHhhccC---CChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 012504 246 MYSKCG--HVEKAFKVFNLMRE---KNLQSWTIMISGLADNGR-GNYAISLFAKMIQTGLKPDSISFSAI 309 (462)
Q Consensus 246 ~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 309 (462)
++...| .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.++++.+..+. |...|+..
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R 185 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYR 185 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 555555 35666666666553 234455555555555555 35666666666655322 34444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-06 Score=65.55 Aligned_cols=109 Identities=6% Similarity=-0.088 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCC----HHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-----EPN----AVIL 374 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~ 374 (462)
..+..+...+...|++++|...+++.... .+.+...+..+...|...|++++|...++++.. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666677777788888888888887764 234566777777778888888888887777632 112 5667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
..+...+...|++ +.|...++++.+..| ++.....+..+.
T Consensus 83 ~~la~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKY-KDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccH-HHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 7777777788888 888888888887777 454555554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=65.97 Aligned_cols=62 Identities=10% Similarity=-0.081 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 373 ILRSFLGACRNHGQVLYLDDNLGKLLLKL-------EPELGANY----VLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 373 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
.|..+..++...|++ ++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~-~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSF-DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777777888888888 8888888888888 88888888 88888888888888888888877653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.3e-06 Score=60.07 Aligned_cols=100 Identities=12% Similarity=-0.060 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CC--CHHHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EP--NAVILRSFLG 379 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~~l~~ 379 (462)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++... +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555556666667777777777776653 223455666677777777777777777766522 23 4667777777
Q ss_pred HHHHc-CChHHHHHHHHHHHHhcCCCCC
Q 012504 380 ACRNH-GQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 380 ~~~~~-~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++... |++ +.|.+.++++.+..|+++
T Consensus 85 ~~~~~~~~~-~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKE-VEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCS-HHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCH-HHHHHHHHHHhhcccCCC
Confidence 77777 777 777777777777777654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-05 Score=60.59 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
..+..++...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3334444444444444444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-05 Score=72.17 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=83.2
Q ss_pred CChhHHHHHHhcCCC--C-ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHH
Q 012504 150 KEIDVAKAVFEEMPV--R-DVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHS 226 (462)
Q Consensus 150 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 226 (462)
+++++|...++.... | +...+..+...+.+.|++++|+..|++..... |+...+ ..+.+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~-- 191 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKA-- 191 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHH--
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHH--
Confidence 334444444444332 1 34466677777777788888888877776642 222000 00000000
Q ss_pred HHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 012504 227 YAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDS 303 (462)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 303 (462)
. +.....+..+..+|.+.|++++|+..+++..+ .+..+|..+..+|...|++++|...|++..+.. +-+.
T Consensus 192 --~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~ 264 (336)
T 1p5q_A 192 --Q----ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNK 264 (336)
T ss_dssp --H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCH
T ss_pred --H----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 0 01134455555566666666666666655542 234556666666666666666666666666542 1234
Q ss_pred HHHHHHHHHhhccCcHHHH-HHHHHHHH
Q 012504 304 ISFSAILSACSHLGLVDEG-KNYFDEMA 330 (462)
Q Consensus 304 ~~~~~ll~~~~~~~~~~~a-~~~~~~~~ 330 (462)
..+..+..++...|+.+++ ...|+.|.
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665 33444444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-06 Score=76.64 Aligned_cols=151 Identities=13% Similarity=-0.040 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 45667777788888899999888888764 343321 233444444433221 1367888889
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHh-hcCCHHHH
Q 012504 349 LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSS-LSGNWDTA 425 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 425 (462)
|.+.|++++|+..+++... +.+...|..+..+|...|++ +.|...|+++.++.|+++.++..+..+.. ..+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~-~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM-DSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH-HHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988732 34678888899999999999 99999999999999999988888887744 45777888
Q ss_pred HHHHHHHhcCCCccC
Q 012504 426 AELMVAINQKGLNKV 440 (462)
Q Consensus 426 ~~~~~~~~~~~~~~~ 440 (462)
...|+.|........
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 889988876655443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00045 Score=60.79 Aligned_cols=95 Identities=11% Similarity=-0.034 Sum_probs=47.9
Q ss_pred hhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc--chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCC-hHHHHHH
Q 012504 183 PSDALKVFHRMKLANESPNSVTLVSLVSACTSLI--NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGH-VEKAFKV 259 (462)
Q Consensus 183 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 259 (462)
+++++.+++.+.... +-+..+|+.-.-.+...+ +++++..+++.+.+.. +-|..+|+.-..+....|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345555555555432 224444444444444444 3556666666666554 4455555555555555555 3556665
Q ss_pred HhhccC---CChhhHHHHHHHHH
Q 012504 260 FNLMRE---KNLQSWTIMISGLA 279 (462)
Q Consensus 260 ~~~~~~---~~~~~~~~l~~~~~ 279 (462)
+.++.+ .|..+|+.....+.
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHH
Confidence 555543 23345554444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3.6e-06 Score=63.42 Aligned_cols=111 Identities=8% Similarity=0.027 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC-CCc----hhHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNI-KPT----MEHYG 343 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 343 (462)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++.......- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 355666677777777777777777777653 234556666677777777777777777777654111 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNMPT-EPNAVILRSFLGA 380 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 380 (462)
.+..+|...|++++|.+.|+++.. .|+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777777777777777777776532 3455544444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.7e-07 Score=66.76 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=53.2
Q ss_pred cCcHHHHHHHHHHHHHhcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHH
Q 012504 316 LGLVDEGKNYFDEMARVYN--IKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLD 391 (462)
Q Consensus 316 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a 391 (462)
.|++++|+..|++..+. + -+.+...+..+..+|...|++++|++.|++... +.+...+..+..++...|++ ++|
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY-EQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH-HHH
Confidence 46666777777776642 1 122355566666667777777777776666532 23455666666666777777 777
Q ss_pred HHHHHHHHhcCCCCCc
Q 012504 392 DNLGKLLLKLEPELGA 407 (462)
Q Consensus 392 ~~~~~~~~~~~p~~~~ 407 (462)
...++++.+..|+++.
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 7777777766666653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-06 Score=70.61 Aligned_cols=120 Identities=10% Similarity=0.016 Sum_probs=77.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC---CCh----------------hhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE---KNL----------------QSWTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
...+..+...+...|++++|...|++..+ .+. ..|..+..+|...|++++|+..+++....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455566667777777777777776553 122 56667777777788888888888777765
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 298 GLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 298 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
. +.+...+..+..++...|++++|...|++.... .+.+...+..+..++...++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234566777777777778888888888777653 1234556666666666666555554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=5e-06 Score=65.27 Aligned_cols=128 Identities=13% Similarity=-0.024 Sum_probs=72.2
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHH
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EPN----AVI 373 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~ 373 (462)
+..+...+...|++++|...+++......-.++ ..++..+...+...|++++|.+.+++... .++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 333444444445555555544444332100011 12445555556666666666666555421 111 345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCC------CCchHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPE------LGANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
+..+...+...|++ +.|...++++.+..+. ...++..++.++...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDY-EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55666777777777 7777777777654221 134567788888888888888888887654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=7.1e-06 Score=61.15 Aligned_cols=96 Identities=8% Similarity=-0.043 Sum_probs=56.6
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 012504 308 AILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHG 385 (462)
Q Consensus 308 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 385 (462)
.+...+...|++++|...+++..+. -+.+...|..+..++...|++++|+..|++... +.+...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444555666677777777666653 123456666666666677777777776666532 234556666666777777
Q ss_pred ChHHHHHHHHHHHHhcCCCCC
Q 012504 386 QVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 386 ~~~~~a~~~~~~~~~~~p~~~ 406 (462)
++ ++|...++++.+..|++.
T Consensus 100 ~~-~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NA-NAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HH-HHHHHHHHHHHC------
T ss_pred CH-HHHHHHHHHHHHhCcCCC
Confidence 77 777777777777666543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-05 Score=59.08 Aligned_cols=91 Identities=11% Similarity=0.021 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC---CchHHHHHHHH
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPT-EPN-A---VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL---GANYVLAASVS 416 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~-~~~-~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 416 (462)
+...+...|++++|...|+.+.. .|+ . ..+..+..++...|++ +.|...++++.+..|++ +.++..++.++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF-QLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 44455556666666666655421 121 1 3444555556666666 66666666666666655 44455566666
Q ss_pred hhcCCHHHHHHHHHHHhcCC
Q 012504 417 SLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~ 436 (462)
...|++++|...|+.+.+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 66666666666666555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.3e-05 Score=71.10 Aligned_cols=183 Identities=7% Similarity=-0.083 Sum_probs=98.3
Q ss_pred HHHHHhcCChhHHHHHHhcCCCC-----C---------------hhhHHHHHHHHHcCCChhHHHHHHHHhHHC-CCCCC
Q 012504 143 LRMYAACKEIDVAKAVFEEMPVR-----D---------------VVSWSSMIAGFVACDSPSDALKVFHRMKLA-NESPN 201 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~~~-----~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~ 201 (462)
...+.+.|++++|++.|..+... + ..++..+...|...|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44566777888888777765421 0 013556677777777777777777766442 11112
Q ss_pred HH----HHHHHHHHHhcccchHhHHHHHHHHHHh----CC-CchHhHHHHHHHHHHhcCChHHHHHHHhhccC-------
Q 012504 202 SV----TLVSLVSACTSLINVRAGESIHSYAVVN----GL-ELDVALGTALVEMYSKCGHVEKAFKVFNLMRE------- 265 (462)
Q Consensus 202 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------- 265 (462)
.. ..+.+-..+...|+.+.+..++...... +. ..-..++..+...|...|++++|..+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 1222223334556677777666665442 11 12234556666667777777777666665431
Q ss_pred -C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHhhccCcHHHHHHH
Q 012504 266 -K-NLQSWTIMISGLADNGRGNYAISLFAKMIQT--GLK-P-D--SISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 266 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~-p-~--~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
+ ...++..++..|...|++++|...+++.... .+. | . ...+..+...+...+++++|...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0 1235666666666666666666666665432 111 1 1 12334444445555666555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.19 E-value=8.5e-06 Score=73.95 Aligned_cols=136 Identities=10% Similarity=-0.076 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCC-chhHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKP-TMEHYGCMVDM 348 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 348 (462)
.+..+...+.+.|++++|+..|++..+. .++.. .... .+... ...| +...|..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHHH
Confidence 4666666777777777777777766542 00000 0000 11111 1122 35678889999
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHH
Q 012504 349 LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 426 (462)
|.+.|++++|++.++++.. +.+...+..+..+|...|++ ++|...++++.++.|++..++..+..++...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~-~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY-DQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988743 34678888999999999999 99999999999999999999999999998888888776
Q ss_pred HH
Q 012504 427 EL 428 (462)
Q Consensus 427 ~~ 428 (462)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 54
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.5e-06 Score=65.96 Aligned_cols=94 Identities=10% Similarity=-0.008 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQT--------GL--------KP-DSISFSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
.+......+.+.|++++|+..|.+.... .. .| +...|..+..++.+.|++++|...++.....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555555555555555555442 00 11 1234444455555555555555555555542
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 333 YNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
-+.+...|..+..+|...|++++|...|++.
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 1223445555555555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.3e-06 Score=63.39 Aligned_cols=83 Identities=19% Similarity=0.105 Sum_probs=47.2
Q ss_pred cCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHH
Q 012504 352 AGLIEEAYHIIRNMPTE----P-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 352 ~~~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 426 (462)
.|++++|+..|++.... | +...+..+..+|...|++ +.|...++++.+..|+++.++..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY-RKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555666666554321 2 234555556666666666 66666666666666666666666666666666666666
Q ss_pred HHHHHHhcC
Q 012504 427 ELMVAINQK 435 (462)
Q Consensus 427 ~~~~~~~~~ 435 (462)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666655543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-06 Score=64.23 Aligned_cols=94 Identities=15% Similarity=0.019 Sum_probs=75.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC------CchH
Q 012504 338 TMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL------GANY 409 (462)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 409 (462)
+...+..+...+...|++++|.+.|++... +.+...+..+..++...|++ +.|...++++.+..|++ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY-TQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 455677788888888999999888887632 34677888888999999999 99999999999999988 6677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHH
Q 012504 410 VLAASVSSLSGNWDTAAELMVAI 432 (462)
Q Consensus 410 ~~l~~~~~~~g~~~~A~~~~~~~ 432 (462)
..++.++...|++++|+..++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 77888888888777776655543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-05 Score=61.94 Aligned_cols=60 Identities=10% Similarity=-0.085 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT----EP----NAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.+..+...+...|++++|.+.+++... .. ....+..+...+...|++ +.|...++++.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH-DQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHH
Confidence 344455555555555555555544311 01 123455566666777777 7777777766654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.6e-05 Score=56.78 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 369 PNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
.+...+..+...+...|++ +.|...++++.+..|+++.+|..++.+|...|++++|++.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNA-SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567777888888888888 88888888888888888888888888888888888888888877643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00038 Score=66.79 Aligned_cols=168 Identities=8% Similarity=-0.038 Sum_probs=127.3
Q ss_pred hHHHHHHHhhccCC---ChhhHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC--
Q 012504 253 VEKAFKVFNLMREK---NLQSWTIMISGLADNGR----------GNYAISLFAKMIQTGLKPDSISFSAILSACSHLG-- 317 (462)
Q Consensus 253 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-- 317 (462)
.++|++.++++.+. +..+|+.-...+...|+ ++++++.++++.....+ +..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 45667777776642 33556665556666666 88899999999886433 5667777666777778
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHc----------
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG-LIEEAYHIIRNMPT--EPNAVILRSFLGACRNH---------- 384 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~---------- 384 (462)
+++++...++++.+. -+-+...|+.-..++.+.| .++++++.++++.. .-+...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 779999999999874 2446777887777788888 88999999988854 24677787777666653
Q ss_pred ----CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHH
Q 012504 385 ----GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 385 ----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
+.+ +++.+.++++....|++..+|..+...+.+.|+.++
T Consensus 202 ~~~~~~~-~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVL-LKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHH-HHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHH-HHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 456 899999999999999999999999999999888555
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.4e-05 Score=72.28 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=97.2
Q ss_pred HhhccCcHHHHHHHHHHHHHhcC--CC---Cc-hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHH
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYN--IK---PT-MEHYGCMVDMLGRAGLIEEAYHIIRNMP---------TEPN-AVILR 375 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~~~ 375 (462)
.+..+|++++|+.++++...... +. |+ ..+++.|..+|...|++++|+.++++.. .+|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999998888765421 22 22 5778999999999999999999888762 2344 45788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-----cCCCCCc---hHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 376 SFLGACRNHGQVLYLDDNLGKLLLK-----LEPELGA---NYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 376 ~l~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
.|...|...|++ ++|+.+++++.+ ++|+.+. ....+..++...|.+++|..+++.+++.
T Consensus 398 nLa~~~~~~G~~-~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHI-EVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999 999999999886 4677664 4557888888999999999999998763
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-05 Score=70.88 Aligned_cols=152 Identities=12% Similarity=0.012 Sum_probs=82.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL 316 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 316 (462)
...+..+...+.+.|++++|...|++..+.+.... .+...++.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888999999999999999998764322211 1222333334332221 13677788888999
Q ss_pred CcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHH-HcCChHHHHHH
Q 012504 317 GLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFLGACR-NHGQVLYLDDN 393 (462)
Q Consensus 317 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~-~~~~~~~~a~~ 393 (462)
|++++|...+++.... -+.+...|..+..+|...|++++|...|+++.. .| +...+..+..... ..+.. +.+..
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~-~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY-QKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 9999999999998864 234578888999999999999999999998854 34 3445555554433 34555 88888
Q ss_pred HHHHHHhcCCCCC
Q 012504 394 LGKLLLKLEPELG 406 (462)
Q Consensus 394 ~~~~~~~~~p~~~ 406 (462)
.+.++.+..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999988888765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.9e-05 Score=60.86 Aligned_cols=72 Identities=13% Similarity=-0.056 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-C-------CC-CHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMP-T-------EP-NAVIL----RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~-~-------~~-~~~~~----~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
.|..+..++.+.|++++|+..+++.. . .| +...| .....++...|++ ++|...|+++.++.|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~-eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG-AEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH-HHHHHHHHHHHhcCCCcHH
Confidence 67777777777888777777776642 1 34 45677 8889999999999 9999999999999999886
Q ss_pred hHHHHH
Q 012504 408 NYVLAA 413 (462)
Q Consensus 408 ~~~~l~ 413 (462)
....+.
T Consensus 138 ~~~~~~ 143 (159)
T 2hr2_A 138 ETPGKE 143 (159)
T ss_dssp CCTTHH
T ss_pred HHHHHH
Confidence 655444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.96 E-value=5.9e-05 Score=52.76 Aligned_cols=73 Identities=18% Similarity=-0.017 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCccCCc
Q 012504 368 EPNAVILRSFLGACRNHGQ---VLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNKVPG 442 (462)
Q Consensus 368 ~~~~~~~~~l~~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 442 (462)
++++..+..+..++...++ . +.|..+++++++.+|+++.....++..+.+.|++++|+.+|+++.+.++. .|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~-~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMT-DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 3567778788887764444 6 99999999999999999999999999999999999999999999988766 443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.95 E-value=4.1e-05 Score=53.30 Aligned_cols=81 Identities=15% Similarity=0.071 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
...+..+...+...|++++|...+++... +.+...+..+..++...|++ +.|...++++.+..|+++..+..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45666677777777888888877776532 33566777778888888888 8888888888888888887887777777
Q ss_pred hhcC
Q 012504 417 SLSG 420 (462)
Q Consensus 417 ~~~g 420 (462)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.94 E-value=4.1e-05 Score=71.73 Aligned_cols=99 Identities=6% Similarity=-0.083 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-C---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-N---------------AVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~---------------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
...+..+...|.+.|++++|+..|+++.. .| + ...|..+..+|.+.|++ +.|...+++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~-~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY-TKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHhc
Confidence 33455555666666666666666665422 11 1 57888899999999999 9999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 402 EPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 402 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.|+++.++..++.+|...|++++|+..|++..+..+.
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999887654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.94 E-value=4.8e-05 Score=71.64 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 012504 241 TALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLG 317 (462)
Q Consensus 241 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 317 (462)
..+...+.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3445567788999999999998764 356789999999999999999999999999863 235678888899999999
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHH--HHhcCCHHHHHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYGCMVDM--LGRAGLIEEAYHIIR 363 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 363 (462)
++++|...+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999998752 2234455556555 888899999999998
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00013 Score=66.09 Aligned_cols=117 Identities=7% Similarity=-0.020 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhccC-------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 012504 240 GTALVEMYSKCGHVEKAFKVFNLMRE-------------------KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLK 300 (462)
Q Consensus 240 ~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 300 (462)
+..+...+.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 44455555556666666555555432 123456666777777777777777777776642 1
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 012504 301 PDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAY 359 (462)
Q Consensus 301 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 359 (462)
.+...+..+..++...|++++|...|++..+. .+.+...+..+..++...++.+++.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 24556666666777777777777777776653 1223555555666666555555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.87 E-value=6.8e-05 Score=55.02 Aligned_cols=80 Identities=9% Similarity=-0.071 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 322 GKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLL 399 (462)
Q Consensus 322 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 399 (462)
|...|++..+. .+.+...+..+...|...|++++|...|++... +.+...|..+..++...|++ +.|...++++.
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR-AGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Confidence 45555555431 223355566666666666666666666665422 23455566666666666666 66666666666
Q ss_pred hcCCC
Q 012504 400 KLEPE 404 (462)
Q Consensus 400 ~~~p~ 404 (462)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 65543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00018 Score=54.85 Aligned_cols=89 Identities=7% Similarity=-0.096 Sum_probs=42.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh--
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL-- 418 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 418 (462)
|...|...+.+++|.+.|++.....++..+..|...|.. .++. ++|..+++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~-~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDL-RKAAQYYSKACGL--NDQDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCH-HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccH-HHHHHHHHHHHcC--CCHHHHHHHHHHHHCCC
Confidence 333344444444444444444333344444444444444 4445 5555555555443 233445555555555
Q ss_pred --cCCHHHHHHHHHHHhcCC
Q 012504 419 --SGNWDTAAELMVAINQKG 436 (462)
Q Consensus 419 --~g~~~~A~~~~~~~~~~~ 436 (462)
.+++++|.+.|++..+.|
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 455555555555555444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.2e-05 Score=61.88 Aligned_cols=98 Identities=7% Similarity=-0.023 Sum_probs=56.2
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNL 394 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 394 (462)
+.+.+++|...++...+. -+.+...|..+..++...++++.+...++ .+ ++|+..
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~-~eAi~~ 68 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MI-QEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HH-HHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HH-HHHHHH
Confidence 344566666666666543 12235555555555555554432222111 13 567777
Q ss_pred HHHHHhcCCCCCchHHHHHHHHhhcC-----------CHHHHHHHHHHHhcCCC
Q 012504 395 GKLLLKLEPELGANYVLAASVSSLSG-----------NWDTAAELMVAINQKGL 437 (462)
Q Consensus 395 ~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~ 437 (462)
|+++++++|+...+|..++.+|...| ++++|++.|++..+.++
T Consensus 69 le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 77777777777777777777776653 67777777776665544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=7.4e-05 Score=54.21 Aligned_cols=68 Identities=10% Similarity=-0.039 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 370 NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+...+..+...+...|++ +.|...++++.+..|+++.++..++.++...|++++|++.+++..+..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLY-REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 456788888999999999 99999999999999999999999999999999999999999999877654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0013 Score=49.93 Aligned_cols=112 Identities=6% Similarity=-0.140 Sum_probs=90.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCHHH
Q 012504 282 GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AGLIEE 357 (462)
Q Consensus 282 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 357 (462)
+++++|.+.|++..+.| .|+.. +...|...+..++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 33443 666777778888899999988764 356677888888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCC
Q 012504 358 AYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 358 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p 403 (462)
|.++|++.....++..+..|...|.. .++. ++|..+++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~-~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE-KQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCH-HHHHHHHHHHHHCCC
Confidence 99999988656678888888888888 7888 999999999888753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00016 Score=50.10 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 370 NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
+...+..+...+...|++ +.|...++++.+..|+++.++..++.++...|++++|+..+++..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 356778888899999999 9999999999999999999999999999999999999999999887654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00034 Score=65.55 Aligned_cols=95 Identities=13% Similarity=0.011 Sum_probs=53.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC-------C---C-hhhHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE-------K---N-LQSWTIMISGLADNGRGNYAISLFAKMIQT-----GL- 299 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~- 299 (462)
..+++.|..+|...|++++|..++++..+ + + ..+++.|...|...|++++|..++++..+- |.
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555555666666666666555555431 1 1 135666666777777777777766665431 21
Q ss_pred CCCH-HHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 300 KPDS-ISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 300 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
.|+. .+...+-.++...+.+++|+.+|..+.+
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 2344555566667777777777777754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00095 Score=64.07 Aligned_cols=155 Identities=10% Similarity=0.002 Sum_probs=121.7
Q ss_pred HcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc----------HHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 280 DNG-RGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGL----------VDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 280 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
+.| ..++|++.++++...+.. +...|+.--.++...|+ ++++...++.+.+. -+-+..+|..-..+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWL 116 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 344 446789999999986322 34456555555555565 89999999999874 34567888888888
Q ss_pred HHhcC--CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc----
Q 012504 349 LGRAG--LIEEAYHIIRNMPT--EPNAVILRSFLGACRNHG-QVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS---- 419 (462)
Q Consensus 349 ~~~~~--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---- 419 (462)
+.+.| +++++++.++++.. +.+...|+.-..++...| .. +++.+.++++.+.+|.+..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~-~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP-AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH-HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 88889 77999999999843 457888888888888888 77 9999999999999999999999998888764
Q ss_pred ----------CCHHHHHHHHHHHhcCCCc
Q 012504 420 ----------GNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 420 ----------g~~~~A~~~~~~~~~~~~~ 438 (462)
+.+++++++++..+..++.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5678999999888765543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00039 Score=50.82 Aligned_cols=76 Identities=8% Similarity=-0.032 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 287 AISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 287 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
|+..|++..+.. +.+...+..+...+...|++++|...+++.... .+.+...|..+..+|...|++++|...|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444432 123344444555555555555555555555442 1222444455555555555555555555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00041 Score=53.31 Aligned_cols=125 Identities=11% Similarity=0.049 Sum_probs=82.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcH----------HHHHHHHHHHHHhcCCCCc-hhHHHHHHH
Q 012504 279 ADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLV----------DEGKNYFDEMARVYNIKPT-MEHYGCMVD 347 (462)
Q Consensus 279 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 347 (462)
.+.+++++|.+.+++..+.. +.+...|..+..++...+++ ++|+..|++..+. .|+ ...|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHHHHH
Confidence 46678999999999999874 33677888888888888765 4777777776643 343 556666666
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHH
Q 012504 348 MLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAE 427 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 427 (462)
+|...|++ .|+... ..|++ ++|...|+++++++|++......+- ..++|-+
T Consensus 89 ay~~lg~l------------~P~~~~---------a~g~~-~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~e 139 (158)
T 1zu2_A 89 AYTSFAFL------------TPDETE---------AKHNF-DLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQ 139 (158)
T ss_dssp HHHHHHHH------------CCCHHH---------HHHHH-HHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHH
T ss_pred HHHHhccc------------Ccchhh---------hhccH-HHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHh
Confidence 66655543 233211 12678 9999999999999998762222222 2345555
Q ss_pred HHHHHhcCC
Q 012504 428 LMVAINQKG 436 (462)
Q Consensus 428 ~~~~~~~~~ 436 (462)
+.-.+...+
T Consensus 140 l~~~~~~~~ 148 (158)
T 1zu2_A 140 LHAEAYKQG 148 (158)
T ss_dssp HHHHHHHSS
T ss_pred ccCcccccc
Confidence 555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00019 Score=50.81 Aligned_cols=80 Identities=15% Similarity=-0.009 Sum_probs=58.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 012504 345 MVDMLGRAGLIEEAYHIIRNMPT--EPNAV-ILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 421 (462)
....+.+.|++++|.+.++++.. +.+.. .+..+..++...|++ +.|...++++.+..|+++.++.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDW-QKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 45567778888888888877632 23556 778888888889999 99999999999999888866532 45
Q ss_pred HHHHHHHHHHHh
Q 012504 422 WDTAAELMVAIN 433 (462)
Q Consensus 422 ~~~A~~~~~~~~ 433 (462)
+.++...+++..
T Consensus 77 ~~~a~~~~~~~~ 88 (99)
T 2kc7_A 77 VMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHCCTT
T ss_pred HHHHHHHHHHHh
Confidence 566666665443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0005 Score=48.60 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=56.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGA-NYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
....+...|++ +.|...++++.+..|+++. .+..++.+|...|++++|++.|++..+.++..
T Consensus 6 ~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDI-ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHTCH-HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 45678899999 9999999999999999999 99999999999999999999999998876543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0011 Score=47.07 Aligned_cols=60 Identities=10% Similarity=0.148 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMA 330 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 330 (462)
.+..+...|...|++++|+..|++..+... .+...|..+..++...|++++|...|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444444321 122334444444444444444444444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00044 Score=63.64 Aligned_cols=81 Identities=9% Similarity=-0.054 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCCC---chHHHHH
Q 012504 352 AGLIEEAYHIIRNMP---------TEPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKL-----EPELG---ANYVLAA 413 (462)
Q Consensus 352 ~~~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~ 413 (462)
.|++++|+.++++.. .+|+ ..+++.|..+|...|++ ++|+.+++++++. +|+++ ..+..|+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~-~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDW-EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456666666665541 1222 35667777777777777 7777777777642 44443 4566777
Q ss_pred HHHhhcCCHHHHHHHHHHHh
Q 012504 414 SVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~~~ 433 (462)
.+|..+|++++|+.++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 77777788877777777654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.021 Score=50.51 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=26.1
Q ss_pred CChhhHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 012504 266 KNLQSWTIMISGLA--DNG---RGNYAISLFAKMIQTGLKPD-SISFSAILSAC 313 (462)
Q Consensus 266 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~ 313 (462)
.++..|...+++.. ..+ +..+|..+|++..+. .|+ ...+..+..++
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 45666776665543 222 346788888888875 444 33444444333
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0012 Score=59.83 Aligned_cols=223 Identities=15% Similarity=0.099 Sum_probs=121.4
Q ss_pred CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHH
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIF 128 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (462)
+++.|.+.-++... ...|..|..+....+.+.+|++.|-+. -|+..|..++.++.+.|.++.-..++...+
T Consensus 40 ~ldRa~eyA~~~n~---p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR 110 (624)
T 3lvg_A 40 NLDRAYEFAERCNE---PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 110 (624)
T ss_dssp CSTTTTTSSSSCCC---CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred ccHHHHHHHHHhCC---ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45555554444432 234555666666666666665544211 145556666666666666666666555444
Q ss_pred HhCCCCccchHhHHHHHHHhcCChhH----------------------------HHHHHhcCC-----------------
Q 012504 129 KVGLDSDKYIGNTLLRMYAACKEIDV----------------------------AKAVFEEMP----------------- 163 (462)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------------A~~~~~~~~----------------- 163 (462)
+..-.| .+=+.|+-+|++.+++.+ |.-+|..+.
T Consensus 111 k~~ke~--~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 111 KKARES--YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp TTCCST--TTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGS
T ss_pred HHhccc--ccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 432222 222455556666555444 333333332
Q ss_pred -------CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCch
Q 012504 164 -------VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELD 236 (462)
Q Consensus 164 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 236 (462)
..++.+|..+-.+|...+.+..|.-.--.+.-. || ....++..|-..|-+++.+.+++.-.... +..
T Consensus 189 AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAH 262 (624)
T 3lvg_A 189 AVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAH 262 (624)
T ss_dssp STTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCC
T ss_pred HHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chh
Confidence 124556666666666666665554443333211 11 11223444566677777666666655322 456
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHhhccC----C-------ChhhHHHHHHHHHHcCChHHHHH
Q 012504 237 VALGTALVEMYSKCGHVEKAFKVFNLMRE----K-------NLQSWTIMISGLADNGRGNYAIS 289 (462)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~ 289 (462)
..+|+-|.-.|++- ++++..+.++.... | ....|..++-.|++-.+++.|..
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 67788887777764 56666666665443 1 23468888888888888887653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0015 Score=60.21 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=52.1
Q ss_pred HHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----CCCCC---ch
Q 012504 347 DMLGRAGLIEEAYHIIRNMPT---------EPN-AVILRSFLGACRNHGQVLYLDDNLGKLLLKL-----EPELG---AN 408 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~~---------~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~ 408 (462)
..+.+.|++++|+.++++... .|+ ..+++.+..+|...|++ ++|+.+++++++. +|+++ ..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~-~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLL-EEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334456677777766655411 111 34566666777777777 7777777776642 34443 34
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 409 YVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 409 ~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
+..|+..|..+|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6667777777777777777776554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0044 Score=57.02 Aligned_cols=93 Identities=8% Similarity=-0.141 Sum_probs=70.3
Q ss_pred ccCcHHHHHHHHHHHHHhc--CCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVY--NIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMP---------TEPN-AVILRSFL 378 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~~~~l~ 378 (462)
..|++++|+.++++..... -+.|+ ..+++.|..+|...|++++|+.++++.. .+|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888888776531 12222 5778889999999999999999888762 2344 45788899
Q ss_pred HHHHHcCChHHHHHHHHHHHHh-----cCCCCCch
Q 012504 379 GACRNHGQVLYLDDNLGKLLLK-----LEPELGAN 408 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 408 (462)
..|...|++ ++|+.+++++.+ .+|+.+.+
T Consensus 390 ~~~~~qg~~-~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENK-AAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCH-HHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999 999999999886 36777643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.012 Score=52.02 Aligned_cols=136 Identities=13% Similarity=0.046 Sum_probs=95.4
Q ss_pred CCCCHHHHHHHHHHhhc-----cCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHh---cC-----C---HHHHHHH
Q 012504 299 LKPDSISFSAILSACSH-----LGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGR---AG-----L---IEEAYHI 361 (462)
Q Consensus 299 ~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~-----~---~~~A~~~ 361 (462)
.+.+...|...+++... ..+..+|..+|++..+. .|+ ...|..+..+|.- .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35567778877766432 34468899999999864 565 4455544444421 11 1 1122222
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 362 IRNMPT-EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 362 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
...+.. +.++.++..+...+...|++ +.|...++++..++|+ ...|..++.++.-.|++++|.+.+++....++.+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~-d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKT-DESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 222222 45788888888888888999 9999999999999964 5567788999999999999999999988877654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.017 Score=58.34 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=49.9
Q ss_pred HHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 012504 247 YSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYF 326 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 326 (462)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 344566666666655442 345666666666666666666666665532 222333333344544444443
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 327 DEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
+..... + -++.-..+|.+.|++++|++++.++.
T Consensus 731 ~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 731 KDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 333321 1 12222333444555555555555543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.3 Score=46.96 Aligned_cols=249 Identities=10% Similarity=-0.002 Sum_probs=133.7
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchH
Q 012504 140 NTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVR 219 (462)
Q Consensus 140 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 219 (462)
+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3445566778888888887776 44455555666677777888777777777665554 334555666666666555432
Q ss_pred h--HHHHHHHHHHhC-----------CCchHh-HHHHHHHHHHhcCChHHHHHHHhhccCCChh---hHHHHHHHHHHcC
Q 012504 220 A--GESIHSYAVVNG-----------LELDVA-LGTALVEMYSKCGHVEKAFKVFNLMREKNLQ---SWTIMISGLADNG 282 (462)
Q Consensus 220 ~--a~~~~~~~~~~~-----------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~ 282 (462)
. ...-+..+...| ++++.. ....++..+. +...+....... .++.. .+...+.-+.+ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 2 222222222222 112211 1111222111 122222222221 11111 11112233333 3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHH
Q 012504 283 RGNYAISLFAKMIQTGLKPDSI----SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 358 (462)
+.+.|...+......+ ..+.. ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 7788999988886543 22332 2223333344455345556666655432 23333344445555677999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 359 YHIIRNMPTEP--NAVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 359 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
...|+.|...+ ...-..-+..++...|+. ++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~-~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGRE-AEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH-HHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCH-HHHHHHHHHHhc
Confidence 99999997642 233333456677888999 999999998875
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.01 Score=54.67 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=73.1
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhc--CCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHH
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVY--NIKPT----MEHYGCMVDMLGRAGLIEEAYHIIRNMP---------TEPN-AVI 373 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~-~~~ 373 (462)
+..+...|++++|+.++++..... -+.|+ ..+++.+..+|...|++++|+.+++++. ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888876431 12222 5678888889999999999988888762 1343 456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHh-----cCCCCCchH
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLK-----LEPELGANY 409 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 409 (462)
++.|...|...|++ ++|..+++++.+ .+|+.+.+-
T Consensus 374 l~nLa~~~~~~g~~-~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMF-PQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 88889999999999 999999999886 377776443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.1 Score=52.63 Aligned_cols=154 Identities=10% Similarity=0.062 Sum_probs=100.0
Q ss_pred HHHHhCCCchhHHH-HHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCCh
Q 012504 74 RAYAKTSCSIESIK-LFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEI 152 (462)
Q Consensus 74 ~~~~~~g~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (462)
......+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.. ..-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCH
Confidence 34455778888766 44211 11223366777777888888877655321 1224456788999
Q ss_pred hHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhC
Q 012504 153 DVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNG 232 (462)
Q Consensus 153 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 232 (462)
+.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++.+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999988774 567899999999999999999999998754 3445555555677776666655555544
Q ss_pred CCchHhHHHHHHHHHHhcCChHHHHHHHhh
Q 012504 233 LELDVALGTALVEMYSKCGHVEKAFKVFNL 262 (462)
Q Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 262 (462)
. ++....+|.+.|++++|.+++.+
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 22333445566777776666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0088 Score=50.71 Aligned_cols=87 Identities=10% Similarity=0.029 Sum_probs=63.4
Q ss_pred HHHHHHHHHhCCC-CCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhcCCCC-CchHHHHHHHHhhc-CCHH
Q 012504 355 IEEAYHIIRNMPT-EPN---AVILRSFLGACRN-----HGQVLYLDDNLGKLLLKLEPEL-GANYVLAASVSSLS-GNWD 423 (462)
Q Consensus 355 ~~~A~~~~~~~~~-~~~---~~~~~~l~~~~~~-----~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~ 423 (462)
...|...+++... .|+ ...|..+...|.. -|+. ++|++.|+++++++|+. ..++...+..+++. |+.+
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~-ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGM-EKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCH-HHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCH-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3455555555422 344 4567777777777 4888 88889999998888875 88888888888874 8888
Q ss_pred HHHHHHHHHhcCCCccCCc
Q 012504 424 TAAELMVAINQKGLNKVPG 442 (462)
Q Consensus 424 ~A~~~~~~~~~~~~~~~~~ 442 (462)
+|.+++++..+..+...|.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHcCCCCCCCC
Confidence 8888888888877774343
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.013 Score=41.70 Aligned_cols=73 Identities=15% Similarity=-0.024 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchH
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPT---------EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANY 409 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 409 (462)
..-+..|...+.+.|+++.|...|+.+.. .+...++..+..++.+.|++ +.|...++++.+..|+++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~-~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL-DKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH-HHHHHHHHHHHhcCCCCHHHH
Confidence 33444566666666666666666655411 23467788888899999999 999999999999999887654
Q ss_pred HHH
Q 012504 410 VLA 412 (462)
Q Consensus 410 ~~l 412 (462)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.17 Score=39.38 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=63.1
Q ss_pred HHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHH
Q 012504 143 LRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGE 222 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 222 (462)
+......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44556677777777777665 3566777777777778888877777776543 333444455556666555
Q ss_pred HHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhcc
Q 012504 223 SIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMR 264 (462)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 264 (462)
.+-+.....| . ++.....+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 5544444443 1 2233334455567777766665543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.16 Score=37.21 Aligned_cols=148 Identities=12% Similarity=0.038 Sum_probs=93.3
Q ss_pred HHHHHHH--HHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHH
Q 012504 69 YNTLIRA--YAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMY 146 (462)
Q Consensus 69 y~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (462)
...|+.+ +.-.|..++..++..+..... +..-||.+|-.....-+-+-..++++.+-+. -|.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi---------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL---------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------
Confidence 3444443 345788888888888777642 4555666665555544444444444433221 122
Q ss_pred HhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHH
Q 012504 147 AACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHS 226 (462)
Q Consensus 147 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 226 (462)
..+|++......+-.+.. +....+..+.....+|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.
T Consensus 72 s~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 72 DKCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp GGCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 133444444444433322 3335566677778888888888888885443 46888888888999999999999999998
Q ss_pred HHHHhCCC
Q 012504 227 YAVVNGLE 234 (462)
Q Consensus 227 ~~~~~~~~ 234 (462)
+.-+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 88888854
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.16 Score=37.17 Aligned_cols=142 Identities=10% Similarity=0.067 Sum_probs=101.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
+.-.|..++..++..+.... .+..-|+.++.-....-+-+-..++++.+-+-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 44567788888888777764 24556666766555666666667777766443222 23455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 358 AYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 358 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
....+-.+. .+.......+......|+. +.-..++..+....|.++.....++.+|.+.|+..+|.+++.+.-++|+
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~Kk-DqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKR-DKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCH-HHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccH-hHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 555555554 2445556667888899999 8888898887777777888999999999999999999999999999987
Q ss_pred cc
Q 012504 438 NK 439 (462)
Q Consensus 438 ~~ 439 (462)
..
T Consensus 157 kE 158 (172)
T 1wy6_A 157 KE 158 (172)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0044 Score=47.04 Aligned_cols=91 Identities=9% Similarity=-0.073 Sum_probs=71.3
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhCCC-C-C--CHHHHHHHHHHHHHcCCh
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG---LIEEAYHIIRNMPT-E-P--NAVILRSFLGACRNHGQV 387 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~-~--~~~~~~~l~~~~~~~~~~ 387 (462)
.......+.+.|.+.... + +++..+...+..++++.+ +.++++.+|++... . | ....+..+.-++.+.|++
T Consensus 10 ~~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CHHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 345667788888877663 3 478888888999999988 66799999988743 2 4 345666778889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCch
Q 012504 388 LYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~p~~~~~ 408 (462)
+.|.++++.+++.+|++..+
T Consensus 88 -~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 88 -EKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp -HHHHHHHHHHHHHCTTCHHH
T ss_pred -HHHHHHHHHHHhcCCCCHHH
Confidence 99999999999999988633
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.014 Score=41.54 Aligned_cols=68 Identities=10% Similarity=-0.063 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 370 NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE-------PELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
+..-+..+...+...+++ ..|...++.+.+.. +..+.++..|+.++.+.|++++|+.++++..+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y-~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADY-YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccch-HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 445566788999999999 99999999998752 233567889999999999999999999998875543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.016 Score=44.00 Aligned_cols=80 Identities=10% Similarity=-0.080 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---cHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCCHHHH
Q 012504 284 GNYAISLFAKMIQTGLKPDSISFSAILSACSHLG---LVDEGKNYFDEMARVYNIKP--TMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 284 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A 358 (462)
...+.+-|.+..+.|. ++..+...+..++.+++ +.+++..+++.+.+. . .| +...+..|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4455666666666544 56666666666777766 666888888887775 2 23 355566667777888888888
Q ss_pred HHHHHhCC
Q 012504 359 YHIIRNMP 366 (462)
Q Consensus 359 ~~~~~~~~ 366 (462)
.+.++.+.
T Consensus 91 ~~y~~~lL 98 (152)
T 1pc2_A 91 LKYVRGLL 98 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887763
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.00016 Score=65.39 Aligned_cols=236 Identities=8% Similarity=0.032 Sum_probs=163.1
Q ss_pred ccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc
Q 012504 135 DKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTS 214 (462)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 214 (462)
.+.+|..|..+....+.+.+|++.|=+. .|+..|..++....+.|.+++-++++...++..-.| ..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4467788888888888888877766433 456677788888888888888888887666653333 333467888888
Q ss_pred ccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC------------------------CChhh
Q 012504 215 LINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE------------------------KNLQS 270 (462)
Q Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~ 270 (462)
.+++.+.++++ -.|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 88776644432 135666666777778888888888777766541 35678
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC-CCchhHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNI-KPTMEHYGCMVDML 349 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~ 349 (462)
|..+-.+|...+.+.-|.-.--.++- .|| -...++..|...|.+++-+.+++.-. |+ ....-+|+-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHH
Confidence 99999999999988776555444432 222 23345667888899999888888776 33 34577888888888
Q ss_pred HhcCCHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHHcCChHHHH
Q 012504 350 GRAGLIEEAYHIIRNMPTE----------PNAVILRSFLGACRNHGQVLYLD 391 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~a 391 (462)
++- ++++..+.++..-.+ .....|..++-.|....++ +.|
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~-DnA 323 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-DNA 323 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCH-HHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhH-HHH
Confidence 765 667777766654221 2345677888888888888 544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.067 Score=36.95 Aligned_cols=70 Identities=11% Similarity=-0.101 Sum_probs=49.7
Q ss_pred CCchhHHHHHHHHHHhcCC---HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 336 KPTMEHYGCMVDMLGRAGL---IEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+.++..+..+..++...++ .++|..++++... +.++.....+...+...|++ +.|...++++.+..|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y-~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRF-QEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCc
Confidence 3456667777777654444 6788888877632 34567777777788888888 888888888888888743
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.28 Score=35.78 Aligned_cols=93 Identities=8% Similarity=-0.076 Sum_probs=62.9
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHHcCCh
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE---AYHIIRNMPTE--P--NAVILRSFLGACRNHGQV 387 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~ 387 (462)
.......+.+.|...... + .++..+--.+..++.+..+... ++.+++++... | .......|.-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334455556666655443 3 3666676677777877776555 77888776543 3 223445566788999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHH
Q 012504 388 LYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
+.|.+.++.+++..|++..+..
T Consensus 91 -~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 91 -EKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp -HHHHHHHHHHHHHCTTCHHHHH
T ss_pred -HHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999998865443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.089 Score=51.57 Aligned_cols=55 Identities=11% Similarity=0.014 Sum_probs=51.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 378 LGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 378 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
...|...|++ +.|..+.+++....|.+-.+|..|+.+|...|+++.|+-.+..+.
T Consensus 344 a~FLl~K~~~-elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDY-ELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcH-HHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3456788999 999999999999999999999999999999999999999999886
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.79 Score=35.70 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=70.8
Q ss_pred HHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 012504 246 MYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNY 325 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 325 (462)
...+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345667777777666554 3456677777777777777777777766542 23333334455666555544
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 326 FDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLL 398 (462)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 398 (462)
-+..... | -++.-...+.-.|+++++.++|.+...-|.... .....|-. +.|.++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~-~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDE-AAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCH-HHHHHHHHHT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcH-HHHHHHHHHh
Confidence 4443332 1 134444555667777777777777653221111 11224444 6666666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.22 Score=37.39 Aligned_cols=102 Identities=10% Similarity=0.049 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHhhccCcH------HHHHHHHHHHHHhcCCCCch-hHHHHHHHH------HHhcCCHHHHHHHHHhCCC-
Q 012504 302 DSISFSAILSACSHLGLV------DEGKNYFDEMARVYNIKPTM-EHYGCMVDM------LGRAGLIEEAYHIIRNMPT- 367 (462)
Q Consensus 302 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~~~~~~A~~~~~~~~~- 367 (462)
|..++-..+....+.|++ ++..++|++... .++|+. ..|...+.. +...++.++|.++|+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444565555555555666 666677776665 455542 111111111 1233566666666655521
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 368 -EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 368 -~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+.-..+|-.....-.+.|+. ..|..++.++..+.|.+.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl-~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNV-KKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTCBCH
T ss_pred hHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHhccCCCcH
Confidence 11255555555555566666 666666666666665544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.067 Score=39.00 Aligned_cols=84 Identities=8% Similarity=-0.141 Sum_probs=62.6
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHhhcCCHHHHH
Q 012504 354 LIEEAYHIIRNMP--TEPNAVILRSFLGACRNHGQVLYL---DDNLGKLLLKLE-P-ELGANYVLAASVSSLSGNWDTAA 426 (462)
Q Consensus 354 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~ 426 (462)
....+.+-|.+.. ..++..+-..+..++.+..+. .. ++.+++.+.+.. | ..-.....|+.++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~-~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYN-DDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSH-HHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444432 247778877888888888877 55 888888888766 4 34467888999999999999999
Q ss_pred HHHHHHhcCCCc
Q 012504 427 ELMVAINQKGLN 438 (462)
Q Consensus 427 ~~~~~~~~~~~~ 438 (462)
++++.+.+..+.
T Consensus 95 ~~~~~lL~~eP~ 106 (126)
T 1nzn_A 95 KYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHhCCC
Confidence 999999876654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.66 Score=39.42 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-CcHHHHHHHHHHHHHh
Q 012504 270 SWTIMISGLADN-----GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL-GLVDEGKNYFDEMARV 332 (462)
Q Consensus 270 ~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~ 332 (462)
.|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.+++.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 455555555552 56666666666666542211244444455555553 5666666666666543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.23 E-value=2.8 Score=44.01 Aligned_cols=164 Identities=12% Similarity=0.004 Sum_probs=108.8
Q ss_pred chHhHHHHHHHHHHhcCChHHHHHHHhhccCC--------------------------ChhhHHHHHHHHHHcCChHHHH
Q 012504 235 LDVALGTALVEMYSKCGHVEKAFKVFNLMREK--------------------------NLQSWTIMISGLADNGRGNYAI 288 (462)
Q Consensus 235 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~a~ 288 (462)
.++...-.++.+|..+|++++|...|++.... -..-|..++..+-+.+.++.+.
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 34444456778899999999999999876421 0123677788888999999999
Q ss_pred HHHHHHHHCCCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHH------
Q 012504 289 SLFAKMIQTGLKPDS----ISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEA------ 358 (462)
Q Consensus 289 ~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A------ 358 (462)
++-+...+....-+. ..|..+.+++...|++++|...+-.+... . --......|+...+..|..+.-
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--~r~~cLr~LV~~lce~~~~~~L~~lpf~ 996 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--LKKSCLLDFVNQLTKQGKINQLLNYSMP 996 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--SCHHHHHHHHHHHHHHCCHHHHHHHTTT
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--HHHHHHHHHHHHHHhCCChhhhhCCCCc
Confidence 888877764222121 25777888899999999998888777542 2 2345677777777766655543
Q ss_pred ------HHHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Q 012504 359 ------YHIIRNM-PT----EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKL 401 (462)
Q Consensus 359 ------~~~~~~~-~~----~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 401 (462)
.+++..- .. ...+.-|..|..-+..+|++...|..+|+.+.++
T Consensus 997 gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 997 TLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 3333211 00 1122345555555677888867888888888775
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.83 Score=34.99 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=56.9
Q ss_pred HHHHHhcCChHHHHHHHhhccC-----CCh-------hhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC-CHHHHHHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMRE-----KNL-------QSWTIMISGLADNGRGNYAISLFAKMIQTG-LKP-DSISFSAI 309 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~-----~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~l 309 (462)
+..+...|.++.|+-+.+.+.. +++ .++..+..++...+++..|...|++..... .-+ +..+...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 5556666777777666665431 221 144555666777777777777777754321 111 11111111
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTE 368 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 368 (462)
. .....+. .....++.+.--.+..+|.+.+++++|+.+++.++.+
T Consensus 107 ~---~~ss~p~-----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 107 G---NSASTPQ-----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred c---ccCCCcc-----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0 0000000 0022233445455778888888888888888888653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.18 E-value=3.2 Score=43.59 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=36.8
Q ss_pred hHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHh
Q 012504 140 NTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRM 193 (462)
Q Consensus 140 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 193 (462)
..++..+...+..+.+.++..-... +...--.+..++...|++++|.+.|.+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3455666677777777776655544 4444455677888899999999998775
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.19 Score=45.47 Aligned_cols=64 Identities=14% Similarity=-0.032 Sum_probs=39.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhc-----CCCccCC
Q 012504 377 FLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQ-----KGLNKVP 441 (462)
Q Consensus 377 l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 441 (462)
++..+...|+. ..+...++.+...+|-+...+..++.++.+.|+..+|++.|+.+.+ .|+.|.|
T Consensus 177 ~~~~~l~~g~~-~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 177 KAEAEIACGRA-SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 44555566666 6666666666666666666666666666666666666666665432 3555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.04 E-value=5.4 Score=40.23 Aligned_cols=286 Identities=13% Similarity=0.012 Sum_probs=151.4
Q ss_pred HHHHHHhhhhcCchhH-HHH-HHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCC----Chh--hHHHHHHH
Q 012504 105 PFVVKACGRCLLIGIG-GSV-HSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVR----DVV--SWSSMIAG 176 (462)
Q Consensus 105 ~~ll~~~~~~~~~~~a-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~l~~~ 176 (462)
.++.+++...|-.... ... .+++-+. ++....-....-+....|+.+++..+++..... +.. .-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 3556677766643322 221 2233322 222222233344577889999999999887752 222 22334445
Q ss_pred HHcCCChhHHHHHHHHhHHCCC-------CCCHHHHHH--HHHHHhcccchHhHHHHHHHHHHhCCCchH--hHHHHHHH
Q 012504 177 FVACDSPSDALKVFHRMKLANE-------SPNSVTLVS--LVSACTSLINVRAGESIHSYAVVNGLELDV--ALGTALVE 245 (462)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 245 (462)
....|..+++..++.......- .+....-.. |.-++...++- ++...+..+.... .+.. ..-.++..
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGl 498 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGL 498 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhh
Confidence 6667766678887777554311 011122222 33333444443 4455555555432 1111 22234555
Q ss_pred HHHhcCChHHHHHHHhhccCC-C--hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHhhccCc
Q 012504 246 MYSKCGHVEKAFKVFNLMREK-N--LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSI-SFS---AILSACSHLGL 318 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~---~ll~~~~~~~~ 318 (462)
.+...|+-+....+++.+.+. + +.-...+.-++...|+.+.+..+.+.+... .++. -|. .+.-+|+..|+
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCC
Confidence 566778877777777765432 2 222333444555778888888888888764 2332 232 33456788889
Q ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCChHHHHHHHHH
Q 012504 319 VDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRS--FLGACRNHGQVLYLDDNLGK 396 (462)
Q Consensus 319 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~a~~~~~ 396 (462)
.....+++..+.. ....+......+.-++...|+.+.+.++++.+....++.+-.. +.-+....|.....+...+.
T Consensus 576 ~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 8777778888876 3233343333344444456666666677765543334333333 33333444444355666666
Q ss_pred HHH
Q 012504 397 LLL 399 (462)
Q Consensus 397 ~~~ 399 (462)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.90 E-value=1.1 Score=33.31 Aligned_cols=71 Identities=11% Similarity=0.037 Sum_probs=50.1
Q ss_pred CCchhHHHHHHHHHHhcCCH---HHHHHHHHhCCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 336 KPTMEHYGCMVDMLGRAGLI---EEAYHIIRNMPT-EP--NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
.|+..+--.+..++.+..+. .+++.+++++.. .| .......|.-++.+.|++ +.|.++.+.+++.+|++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y-~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-SMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhH-HHHHHHHHHHHhcCCCcHH
Confidence 56777776777778777654 456777776532 23 234445566788899999 9999999999999998753
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.75 Score=34.52 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=41.1
Q ss_pred CCCcccHHHHHHHHHhCCCc------hhHHHHHHHHHHCCCCCCcc-hHHHHHHH------hhhhcCchhHHHHHHHHHH
Q 012504 63 TPPLFAYNTLIRAYAKTSCS------IESIKLFDEMLKTGLRPDNF-TYPFVVKA------CGRCLLIGIGGSVHSLIFK 129 (462)
Q Consensus 63 ~~~~~~y~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~~ 129 (462)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .+..-+.. +...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35677777778777777888 7778888887764 555431 11111111 1233677777777777665
Q ss_pred h
Q 012504 130 V 130 (462)
Q Consensus 130 ~ 130 (462)
.
T Consensus 89 ~ 89 (161)
T 4h7y_A 89 N 89 (161)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.5 Score=36.17 Aligned_cols=125 Identities=13% Similarity=-0.006 Sum_probs=64.8
Q ss_pred CCCCCCHH--HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-------hhHHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 012504 297 TGLKPDSI--SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-------MEHYGCMVDMLGRAGLIEEAYHIIRNMP- 366 (462)
Q Consensus 297 ~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 366 (462)
.|+.|... ++..-++.+...+.++.|+-+.+.+....+.+|+ ..++..+.+++...+++..|...|++..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555433 3444455666777777777777765544233333 1345556677777777777777776641
Q ss_pred ------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 367 ------TEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 367 ------~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
..++..+ .+ ...... .. -. ..+.+.++...++.+|.+.|++++|+.+++.+..+.
T Consensus 92 ~~k~l~k~~s~~~--~~----~~~ss~-p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 92 QKKALSKTSKVRP--ST----GNSAST-PQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHCC-----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHhcCCCccc--cc----cccCCC-cc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 1111110 01 000000 00 00 112334567789999999999999999999765443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.89 E-value=0.82 Score=31.47 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 283 RGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+ +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4456677777777778899999999999999999999999999999877533 334567666643
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.60 E-value=1 Score=32.99 Aligned_cols=72 Identities=11% Similarity=0.026 Sum_probs=46.8
Q ss_pred CCchhHHHHHHHHHHhcCCH---HHHHHHHHhCCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 336 KPTMEHYGCMVDMLGRAGLI---EEAYHIIRNMPT-EP--NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
.|+..+--.+..++.+..+. .+++.+++++.. .| ....+..|.-++.+.|++ +.|.++.+.+++..|++..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY-~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-SMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhhCCCCHHH
Confidence 45555655666667666554 456666666532 23 234555566678888888 88888888888888877543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.22 E-value=6.8 Score=33.83 Aligned_cols=168 Identities=10% Similarity=0.023 Sum_probs=100.3
Q ss_pred HhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHH----HHHHhHHCCCCCCHHHHHHHHHHHhc
Q 012504 139 GNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALK----VFHRMKLANESPNSVTLVSLVSACTS 214 (462)
Q Consensus 139 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~l~~~~~~ 214 (462)
|.++..=|.+.+++++|++++..- ...+.+.|+...|-+ +.+...+.+.+++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 345555677778888888776432 223455666655544 34555667788888888888877665
Q ss_pred ccchH-hHHHHHHHHH----HhCC--CchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHc---CCh
Q 012504 215 LINVR-AGESIHSYAV----VNGL--ELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADN---GRG 284 (462)
Q Consensus 215 ~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 284 (462)
...-+ .-.++.+.++ +.|- .-++.....+...|.+.|++.+|...|-.-...+...+..++--+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 1233334443 3331 236778888999999999999999888743333555555555444443 333
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 285 NYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 285 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
.++-- ..-..++ .|.-.++...|..+++...+.
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 33211 1112222 344568888898888877653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.29 E-value=1.6 Score=42.93 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=41.1
Q ss_pred HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012504 312 ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMP 366 (462)
Q Consensus 312 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 366 (462)
.|...|+++-|+.+-++... -.+.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35567888888888888875 233447888888888888888888888888875
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.61 E-value=12 Score=34.29 Aligned_cols=186 Identities=10% Similarity=0.061 Sum_probs=118.2
Q ss_pred CCChhHHHHHHHHhHHC-----CCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHh-CCCchHh--HHHHHHHHHHhcC
Q 012504 180 CDSPSDALKVFHRMKLA-----NESPNSVTLVSLVSACTSLINVRAGESIHSYAVVN-GLELDVA--LGTALVEMYSKCG 251 (462)
Q Consensus 180 ~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~~~ 251 (462)
.|+++.|++.+..+.+. +..........++..|...|+++.....+.-+.+. |..+... ....++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 37888898888666532 34445677888899999999999887777665543 3222221 1222233333333
Q ss_pred ChH--HHHHHHhhccC--CC---h-----hhHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhh
Q 012504 252 HVE--KAFKVFNLMRE--KN---L-----QSWTIMISGLADNGRGNYAISLFAKMIQT--GLKPD---SISFSAILSACS 314 (462)
Q Consensus 252 ~~~--~a~~~~~~~~~--~~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~ 314 (462)
..+ .-..+...... .+ + .....|...|...|++.+|.+++.++... |.... ...+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322 23334433332 11 1 13456788899999999999999998743 32222 235566677888
Q ss_pred ccCcHHHHHHHHHHHHHh-cCC--CCc--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 315 HLGLVDEGKNYFDEMARV-YNI--KPT--MEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
..+++..|..++.++... +.. +|+ ...+...+..+...+++.+|.+.|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999987432 112 222 345677788888899999998887665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.34 E-value=20 Score=36.28 Aligned_cols=250 Identities=9% Similarity=-0.003 Sum_probs=121.5
Q ss_pred HHHcCCChhHHHHHHHHhHHCCCCCCHH--HHHHHHHHHhcccchHhHHHHHHHHHHhCC-------CchHh--HHHHHH
Q 012504 176 GFVACDSPSDALKVFHRMKLANESPNSV--TLVSLVSACTSLINVRAGESIHSYAVVNGL-------ELDVA--LGTALV 244 (462)
Q Consensus 176 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~--~~~~l~ 244 (462)
+....|+.++++.++......+...+.. .-..+.-+....|..+++..++.......- .+... ....|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4566777777777776654321112222 222222233344444456666666554321 01111 222333
Q ss_pred HHHHhcCChHHHHHHHhh-ccCCChhh--HH--HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHhhccC
Q 012504 245 EMYSKCGHVEKAFKVFNL-MREKNLQS--WT--IMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAIL--SACSHLG 317 (462)
Q Consensus 245 ~~~~~~~~~~~a~~~~~~-~~~~~~~~--~~--~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~~ 317 (462)
-+|.-.++- ++.+.+.. +...+... .. ++...++-.|+.+....++..+.+. .+......+. -++...|
T Consensus 463 la~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCC
Confidence 444444543 33444433 33333221 22 2233344556766667777766653 1333333233 3344667
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHH--HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCChHHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYG--CMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLG--ACRNHGQVLYLDDN 393 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~a~~ 393 (462)
+.+.+..+.+.+.. ...|....-. .+.-+|+-.|+.....+++..+...++..+-...+. ++...|+. +.+.+
T Consensus 539 ~~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~-e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLA--SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY-TTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-SSHHH
T ss_pred ChHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-HHHHH
Confidence 77888888887765 2233332222 334456677787666668777754444443333333 33445666 55555
Q ss_pred HHHHHHhcCCCCCchHHHHHHHH--hhcCCH-HHHHHHHHHHhc
Q 012504 394 LGKLLLKLEPELGANYVLAASVS--SLSGNW-DTAAELMVAINQ 434 (462)
Q Consensus 394 ~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~-~~A~~~~~~~~~ 434 (462)
+++.+.+.. ++.+....+.++ ...|+. .+++.++..+..
T Consensus 616 lv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 555444422 333333333332 233332 678888887754
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.79 E-value=11 Score=32.74 Aligned_cols=167 Identities=11% Similarity=0.061 Sum_probs=100.1
Q ss_pred HhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHH----HHHhHHCCCCCCHHHHHHHHHHHhc
Q 012504 139 GNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKV----FHRMKLANESPNSVTLVSLVSACTS 214 (462)
Q Consensus 139 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~~ 214 (462)
|.++..=|.+.+++++|++++..- ...+.+.|+...+-++ ++-+.+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 345566688889999988876432 2234556666554444 3555667788888888888877765
Q ss_pred ccchH-hHHHHHHHHH----HhC--CCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHH
Q 012504 215 LINVR-AGESIHSYAV----VNG--LELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYA 287 (462)
Q Consensus 215 ~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 287 (462)
...-+ .-..+.+.++ +.| ..-++.....+...|.+.+++.+|...|-.-.++.+..+..++--+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 54321 1122333333 333 2346677788999999999999999988533333345665555444444332221
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Q 012504 288 ISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR 331 (462)
Q Consensus 288 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 331 (462)
+...-..++ -|...++...|..+++...+
T Consensus 187 --------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 --------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 222223333 34556788888887766654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.60 E-value=2.2 Score=31.13 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 283 RGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
|.-+..+-++.+....+.|++......+++|.+.+++..|.++++-++.+. .+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 344566677777777889999999999999999999999999999998753 3445567766643
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.31 E-value=3.4 Score=28.46 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=36.8
Q ss_pred hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 184 SDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 184 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
=++.+-++.+....+.|++......+.+|.+.+++..|.++++-+...- .....+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 3455555666666667777777777777777777777777776665542 22234455444
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.20 E-value=5.5 Score=27.30 Aligned_cols=87 Identities=9% Similarity=0.015 Sum_probs=60.5
Q ss_pred cCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhH
Q 012504 115 LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMK 194 (462)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 194 (462)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+..||...|.+|.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345677777777666553 22222233445678899999999999999999999888765 57788888888887887
Q ss_pred HCCCCCCHHHHH
Q 012504 195 LANESPNSVTLV 206 (462)
Q Consensus 195 ~~~~~p~~~~~~ 206 (462)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 45444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.97 E-value=3.6 Score=37.04 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH----hcCCCCchhH
Q 012504 272 TIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR----VYNIKPTMEH 341 (462)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 341 (462)
..++..+...|+++++...+..+.... +.+...+..++.++...|+..+|.+.|+.+.+ ..|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345566666777777777777666542 33566777777777777777777777766543 2366666544
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.81 E-value=5.8 Score=27.18 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=60.6
Q ss_pred cchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 216 INVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMI 295 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 295 (462)
...++|..|-+.+...+. ...+-..-+..+...|+|++|..+.+.+.-||+..|.++.. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777777653 33333333556778899999999999888889988877654 46788888888887777
Q ss_pred HCCCCCCHHHHH
Q 012504 296 QTGLKPDSISFS 307 (462)
Q Consensus 296 ~~~~~p~~~~~~ 307 (462)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 765 44444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.79 E-value=5.8 Score=27.21 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=58.8
Q ss_pred cCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhH
Q 012504 115 LLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMK 194 (462)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 194 (462)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+..||...|.+|.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345677777776666553 22222233445678899999999999999999998888765 46677777777777777
Q ss_pred HCCCCCCHHHHH
Q 012504 195 LANESPNSVTLV 206 (462)
Q Consensus 195 ~~~~~p~~~~~~ 206 (462)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 34444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.19 E-value=6.3 Score=27.04 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=59.3
Q ss_pred cchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 012504 216 INVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMI 295 (462)
Q Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 295 (462)
...++|..|-+.+...+. ...+-..-+..+...|+|++|..+.+.+.-||+..|.++.. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777777653 33333333556778899999999999888889888877654 46677777777777776
Q ss_pred HCCCCCCHHHHH
Q 012504 296 QTGLKPDSISFS 307 (462)
Q Consensus 296 ~~~~~p~~~~~~ 307 (462)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 34444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.29 E-value=20 Score=31.18 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHh
Q 012504 238 ALGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLF----AKMIQTGLKPDSISFSAILSAC 313 (462)
Q Consensus 238 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~ 313 (462)
.+|.++..=|.+.+++++|++++.. -...+.+.|+...+.++. +-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3555666667888888888887653 233445556665554443 4444556777777766666665
Q ss_pred hccCc--HHHHHHHHHHHH---HhcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 012504 314 SHLGL--VDEGKNYFDEMA---RVYN--IKPTMEHYGCMVDMLGRAGLIEEAYHIIR 363 (462)
Q Consensus 314 ~~~~~--~~~a~~~~~~~~---~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 363 (462)
..... ++. ..+.+++. ..+| ..-++.....+...|.+.+++.+|...|-
T Consensus 105 ~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 105 RLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 44332 111 11111111 1113 22346667778888888888888887773
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.52 E-value=19 Score=30.18 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=74.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCch----hHHHHHHHHHHh
Q 012504 276 SGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTM----EHYGCMVDMLGR 351 (462)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 351 (462)
....+.|++++++.....-++.. +-|...-..+++.+|-.|++++|.+-++...+. .|+. ..|..+|++=
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHH--
Confidence 34567788888888888777763 336667777888888889999988888887653 4442 3344444331
Q ss_pred cCCHHHHH-HHHHhCCC----CCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHhcCCCCCc
Q 012504 352 AGLIEEAY-HIIRNMPT----EPNAVILRSFLGAC--RNHGQVLYLDDNLGKLLLKLEPELGA 407 (462)
Q Consensus 352 ~~~~~~A~-~~~~~~~~----~~~~~~~~~l~~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~ 407 (462)
... ++|.--.. .....-...++.+. ...|+. +.|..+-..+.+.-|..+.
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~-~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY-EQVSELALQIEELRQEKGF 135 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCCCCE
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHhcCcccCC
Confidence 111 22322111 11222334445544 356888 8888888888887776653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=82.93 E-value=2 Score=35.93 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=35.1
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 348 MLGRAGLIEEAYHIIRNM-PTEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
...+.|++++|++.+..- +.+| |...-..|+..++-.|++ +.|..-++...+++|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w-~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDF-ERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCchh
Confidence 345666777776655443 3333 444555566667777777 77777777777776654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.83 E-value=13 Score=27.21 Aligned_cols=65 Identities=8% Similarity=-0.125 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHhhccC---cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012504 300 KPDSISFSAILSACSHLG---LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 300 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 365 (462)
.|+..+--.+..++.++. +..+++.+++.+.+. +..-....+-.|.-++.+.|++++|.+..+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444333333443333 334556666665553 21112344444555666666666666666554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.66 E-value=15 Score=27.24 Aligned_cols=68 Identities=7% Similarity=-0.077 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 369 PNAVILRSFLGACRNHGQVL--YLDDNLGKLLLKLEPEL-GANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 369 ~~~~~~~~l~~~~~~~~~~~--~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
|+..+-..+..++.++.+.. ..++.+++.+.+..|.. -.....|+-++.+.|++++|.++.+.+.+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 44444444444444444331 24444555555544432 2344445555555555555555555554433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.38 E-value=8.5 Score=28.17 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=39.3
Q ss_pred HHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 185 DALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 185 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
+..+-++.+...++.|++......+.+|.+.+|+..|..+++-++..- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455556666666777788877778888888888888877777766543 23344555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 462 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.18 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.15 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.14 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.08 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.99 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.75 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.72 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.66 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.65 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.6 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.59 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.57 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.51 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.31 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.18 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.18 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.17 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.15 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.11 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.09 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.07 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.0 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.94 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.89 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.7 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.7 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.65 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.53 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.49 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.43 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.43 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.27 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.15 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.49 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.03 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.78 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.41 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.22 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.75 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.32 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.06 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.39 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.77 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2e-22 Score=184.10 Aligned_cols=367 Identities=11% Similarity=-0.009 Sum_probs=253.2
Q ss_pred cCCHHHHHHHhccCC--CCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHH
Q 012504 47 SISLHFTRSLFNNLP--VTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVH 124 (462)
Q Consensus 47 ~~~~~~A~~~~~~~~--~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 124 (462)
.|++++|.+.++++- .+.+..++..+...+.+.|++++|++.|+.+.+..+. +..++..+..++.+.|++++|...+
T Consensus 12 ~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~A~~~~ 90 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccccccccc
Confidence 357777777776652 1124566777777777777777777777777765322 4556667777777777777777777
Q ss_pred HHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCC---CCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCC
Q 012504 125 SLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMP---VRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPN 201 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 201 (462)
....+.... +..............+....+........ .................+....+...+....... +.+
T Consensus 91 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (388)
T d1w3ba_ 91 RHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cch
Confidence 777766432 22333333334444444444443333322 2344445555556666777777777777766542 334
Q ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHH
Q 012504 202 SVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGL 278 (462)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 278 (462)
...+..+...+...|+++.|...+....+.. +.+...+..+...+...|++++|...+++... .....+..+...+
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 247 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHH
Confidence 5666677777778888888888888877765 44566777788888888888888888877653 3456677777888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHH
Q 012504 279 ADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEA 358 (462)
Q Consensus 279 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 358 (462)
...|++++|...|++..+.. +-+..++..+...+...|++++|...++.... ..+.+...+..+...+.+.|++++|
T Consensus 248 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A 324 (388)
T d1w3ba_ 248 YEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHH
Confidence 88888888888888887753 22456777777788888888888888888766 3345567777788888888888888
Q ss_pred HHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 012504 359 YHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGN 421 (462)
Q Consensus 359 ~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 421 (462)
++.|++... .| +..++..+..++...|++ ++|...++++.+++|+++.++..++.+|.+.|+
T Consensus 325 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKL-QEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCC-HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 888877543 33 466777788888888888 888888888888888888888888888877775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.2e-20 Score=172.00 Aligned_cols=359 Identities=12% Similarity=0.065 Sum_probs=296.1
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCC
Q 012504 72 LIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKE 151 (462)
Q Consensus 72 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (462)
+...+.+.|++++|++.++++.+..+. +...+..+..++.+.|++++|...++.+++..+ .+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcc
Confidence 456778899999999999999886422 567788888889999999999999999998863 356788899999999999
Q ss_pred hhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHH
Q 012504 152 IDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYA 228 (462)
Q Consensus 152 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 228 (462)
+++|...+..... .+...+..........+....+........... .................+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 9999999988763 344455555555666666777766666655543 334444555566666778888888888877
Q ss_pred HHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 012504 229 VVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSIS 305 (462)
Q Consensus 229 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 305 (462)
.... +.+...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|...+++....+ +.+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 7765 55677888899999999999999999988763 356788999999999999999999999998864 345677
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHH
Q 012504 306 FSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRN 383 (462)
Q Consensus 306 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 383 (462)
+..+...+.+.|++++|...|++..+. .+.+..++..+...+...|++++|.+.++.... +.+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 888888999999999999999999863 344578899999999999999999999988733 4577888889999999
Q ss_pred cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 384 HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 384 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.|++ ++|...++++.+..|+++.++..++.+|.+.|++++|+..|++..+..+.
T Consensus 318 ~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 371 (388)
T d1w3ba_ 318 QGNI-EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TTCH-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred CCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999 99999999999999999999999999999999999999999999876543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.6e-15 Score=130.78 Aligned_cols=240 Identities=11% Similarity=-0.053 Sum_probs=143.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC
Q 012504 172 SMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCG 251 (462)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 251 (462)
.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|+++.|...+.+..+.. +.+...+..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 44556777888888888888877753 2346677777777778888888888887777765 445666777777777777
Q ss_pred ChHHHHHHHhhccCCChh---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 012504 252 HVEKAFKVFNLMREKNLQ---SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDE 328 (462)
Q Consensus 252 ~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 328 (462)
++++|.+.++.....++. .+........ ..+.......+..+...+...++...+.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 777777777765432111 0000000000 00000000111122233455566666666
Q ss_pred HHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 329 MARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
......-.++..++..+...+...|++++|+..+++... +.+...|..+...+...|++ +.|...++++.+..|+++
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS-EEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccc-hhHHHHHHHHHHHhhccH
Confidence 554422233455566666666677777777776666421 23456666666667777777 777777777777777777
Q ss_pred chHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 012504 407 ANYVLAASVSSLSGNWDTAAELMVAINQ 434 (462)
Q Consensus 407 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 434 (462)
.++..++.+|.+.|++++|++.|++..+
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777777777777777777766654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.8e-14 Score=127.50 Aligned_cols=265 Identities=14% Similarity=0.011 Sum_probs=194.3
Q ss_pred HHHHHHHhcCChhHHHHHHhcCCC---CChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccc
Q 012504 141 TLLRMYAACKEIDVAKAVFEEMPV---RDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLIN 217 (462)
Q Consensus 141 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 217 (462)
.....+.+.|++++|+..|+++.+ .+..+|..+..++...|++++|...|.+..+.. +-+...+..+..++...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 356678899999999999999863 367789999999999999999999999988753 3356788888899999999
Q ss_pred hHhHHHHHHHHHHhCCCchHh-HHHHHHHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 012504 218 VRAGESIHSYAVVNGLELDVA-LGTALVEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 218 ~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 296 (462)
+++|...++...... |+.. ......... ...+.......+..+...+.+.+|...+.+...
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999988764 2211 110000000 000111111122333455667788888888776
Q ss_pred CCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHH
Q 012504 297 TGL-KPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVI 373 (462)
Q Consensus 297 ~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 373 (462)
... .++...+..+...+...|++++|...+++.... .+-+...|..+..+|.+.|++++|.+.|+++.. +.+...
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 432 345667788888899999999999999998864 233477888999999999999999999988743 346788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch-----------HHHHHHHHhhcCCHHHHHH
Q 012504 374 LRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN-----------YVLAASVSSLSGNWDTAAE 427 (462)
Q Consensus 374 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~ 427 (462)
|..+..+|...|++ ++|...|++++++.|++... +..+..++...|+.+.+..
T Consensus 243 ~~~lg~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 243 RYNLGISCINLGAH-REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHTCH-HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999 99999999999988876543 3456666666677665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=5e-10 Score=99.43 Aligned_cols=258 Identities=10% Similarity=-0.036 Sum_probs=135.1
Q ss_pred HHHHcCCChhHHHHHHHHhHHCCCCCC----HHHHHHHHHHHhcccchHhHHHHHHHHHHhC----CC-chHhHHHHHHH
Q 012504 175 AGFVACDSPSDALKVFHRMKLANESPN----SVTLVSLVSACTSLINVRAGESIHSYAVVNG----LE-LDVALGTALVE 245 (462)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~ 245 (462)
..+...|++++|++++++..+.....+ ...+..+..++...|++++|...+++..+.. .. .....+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344555666666666665554321111 1234444555556666666666665554421 00 11223444555
Q ss_pred HHHhcCChHHHHHHHhhccC-------CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----CCHHHHHHHH
Q 012504 246 MYSKCGHVEKAFKVFNLMRE-------KN----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLK----PDSISFSAIL 310 (462)
Q Consensus 246 ~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~~~ll 310 (462)
.+...|++..+...+..... +. ...+..+...+...|+++.+...+......... .....+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 56666666666665554431 10 123444555666667777776666666543211 1123334444
Q ss_pred HHhhccCcHHHHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC------CCHHHHHHHHH
Q 012504 311 SACSHLGLVDEGKNYFDEMARVYNIKPT-----MEHYGCMVDMLGRAGLIEEAYHIIRNMPTE------PNAVILRSFLG 379 (462)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~l~~ 379 (462)
..+...++...+...+........-... ...+..+...+...|++++|...++..... .....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 4555566666666666555432211111 223444555566667777777777665321 12334455566
Q ss_pred HHHHcCChHHHHHHHHHHHHhc------CCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 380 ACRNHGQVLYLDDNLGKLLLKL------EPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
++...|++ +.|...++++... .|....++..++.+|.+.|++++|.+.+++..
T Consensus 260 ~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 260 AQILLGEF-EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCH-HHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66777777 7777777666532 23334456666777777777777777776554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=3.4e-10 Score=95.85 Aligned_cols=221 Identities=11% Similarity=-0.049 Sum_probs=139.0
Q ss_pred ChhHHHHHHHHhHHCCC-CC--CHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHH
Q 012504 182 SPSDALKVFHRMKLANE-SP--NSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFK 258 (462)
Q Consensus 182 ~~~~a~~~~~~m~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 258 (462)
+.+.++.-+++...... .+ ...++..+..++.+.|++++|...|++.++.. +.++.++..+..+|.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34455555666554321 11 22356667778888888888888888888875 5567788888888888888888888
Q ss_pred HHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCC
Q 012504 259 VFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNI 335 (462)
Q Consensus 259 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 335 (462)
.|++..+ .+..++..+..+|...|++++|...|++..+... .+......+..++.+.+..+.+..+.......
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--- 168 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---
Confidence 8888764 2456788888888889999999999988887632 23444334444455555555555555554432
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHH-HhCCC----CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchH
Q 012504 336 KPTMEHYGCMVDMLGRAGLIEEAYHII-RNMPT----EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANY 409 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~----~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 409 (462)
.++...+. ++..+............. ..... .| ...+|..+...+...|++ +.|...|+++.+.+|++...|
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL-DSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCTTCHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCCHHHH
Confidence 22222222 222222222222222211 22221 12 234566678888899999 999999999999888876433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=2e-10 Score=97.32 Aligned_cols=216 Identities=8% Similarity=-0.093 Sum_probs=147.8
Q ss_pred chHhHHHHHHHHHHhCC-Cc--hHhHHHHHHHHHHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHH
Q 012504 217 NVRAGESIHSYAVVNGL-EL--DVALGTALVEMYSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISL 290 (462)
Q Consensus 217 ~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 290 (462)
+.+.+...++++..... .+ ...++..+..+|.+.|++++|+..|++..+ .++.+|..+..+|...|++++|++.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 44555555666655421 11 345777889999999999999999998874 4678999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh---CCC
Q 012504 291 FAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRN---MPT 367 (462)
Q Consensus 291 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~ 367 (462)
|+++.+... -+..++..+..++...|++++|...|+...+. . +.+......+...+.+.+..+.+..+... ...
T Consensus 94 ~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 94 FDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-D-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-c-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 999998632 24567888888999999999999999999875 2 33444444444455555555544444333 222
Q ss_pred CCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 368 EPNAVILRSFLGACRNH----GQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 368 ~~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
.+. .+. ++..+... +.. +.+...+.......|....++..++.+|...|++++|++.|+...+.++..
T Consensus 171 ~~~--~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 242 (259)
T d1xnfa_ 171 EQW--GWN-IVEFYLGNISEQTLM-ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242 (259)
T ss_dssp CST--HHH-HHHHHTTSSCHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hhh--hhh-HHHHHHHHHHHHHHH-HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 221 111 22222211 122 333333333444456666788899999999999999999999998876543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=5.4e-09 Score=90.83 Aligned_cols=209 Identities=8% Similarity=0.102 Sum_probs=137.8
Q ss_pred hhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc-chHhHHHHHHHHHHhCCCchHhHHHHHHHH
Q 012504 168 VSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI-NVRAGESIHSYAVVNGLELDVALGTALVEM 246 (462)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 246 (462)
.+++.+...+.+.+.+++|+++++++.+.+ +-+...|+....++...| ++++|...++...+.. +-+..+|..+..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 456667777778888888888888888753 234456677777776665 4788888888888776 5567788888888
Q ss_pred HHhcCChHHHHHHHhhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc------cC
Q 012504 247 YSKCGHVEKAFKVFNLMRE---KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSH------LG 317 (462)
Q Consensus 247 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~------~~ 317 (462)
+.+.|++++|+..++++.+ .+..+|..+...+...|++++|++.++++++.++. +...|+.+...+.+ .+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 8888888888888888764 35677888888888888888888888888876422 45555554444332 33
Q ss_pred cHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 012504 318 LVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM----PTEPNAVILRSFLGACR 382 (462)
Q Consensus 318 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~ 382 (462)
.+++|...+....+. .+.+...|..+...+...| .+++.+.++.. +...+...+..+...|.
T Consensus 201 ~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 466777777777653 2334566666655554433 34444444333 22234455555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=9.1e-09 Score=89.27 Aligned_cols=186 Identities=12% Similarity=-0.001 Sum_probs=136.6
Q ss_pred chHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---C-hhhHHHHHHHHHHcCChHHHHHHHH
Q 012504 217 NVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---N-LQSWTIMISGLADNGRGNYAISLFA 292 (462)
Q Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (462)
..+++..++++..+...+.+...+...+..+.+.|+++.|..+|+++.+. + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677888888876655556677788888888889999999988887642 2 2367888888888888999999998
Q ss_pred HHHHCCCCCCHHHHHHHHH-HhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC----
Q 012504 293 KMIQTGLKPDSISFSAILS-ACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT---- 367 (462)
Q Consensus 293 ~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 367 (462)
++...+.. +...|..... -+...|+.+.|..+|+.+... .+.+...|...++.+.+.|+++.|..+|++...
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 88876432 3333333332 233457888899999888874 344577888888888888999999888887521
Q ss_pred CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCC
Q 012504 368 EP--NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELG 406 (462)
Q Consensus 368 ~~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 406 (462)
+| ....|...+..-...|+. +.+..+.+++.+..|...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~-~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDL-ASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcccc
Confidence 22 245777778777888888 888888888888877765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=6.8e-10 Score=96.66 Aligned_cols=226 Identities=10% Similarity=0.045 Sum_probs=173.6
Q ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcC-ChHHHHHHHhhccC---CChhhHHHHHHHH
Q 012504 203 VTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCG-HVEKAFKVFNLMRE---KNLQSWTIMISGL 278 (462)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 278 (462)
..++.+...+.+.+.+++|...++.+++.. |-+...|+....++...| ++++|+..+++..+ .+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 456667777888899999999999999986 667788898888888876 58999999998764 4568899999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC----
Q 012504 279 ADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL---- 354 (462)
Q Consensus 279 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 354 (462)
...|++++|+..++++.+.. +-+...|..+...+...|++++|...++.+.+. -+.+...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999863 235778999999999999999999999999874 13346778777777666554
Q ss_pred --HHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch--HHHHHHHHhhc--CCHHHHH
Q 012504 355 --IEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN--YVLAASVSSLS--GNWDTAA 426 (462)
Q Consensus 355 --~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~--g~~~~A~ 426 (462)
+++|++.+..+.. +.+...|..+...+. .... +.+...++.+.++.|+.... +..++.+|... +..+.+.
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCG-GGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcCh-HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5788888877532 345677776665544 4456 77888899998888776543 45566666543 6667777
Q ss_pred HHHHHHhc
Q 012504 427 ELMVAINQ 434 (462)
Q Consensus 427 ~~~~~~~~ 434 (462)
..+++..+
T Consensus 278 ~~~~ka~~ 285 (315)
T d2h6fa1 278 DILNKALE 285 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=7.7e-09 Score=91.50 Aligned_cols=258 Identities=8% Similarity=-0.115 Sum_probs=138.2
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCCCC----cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCC-c----cchHhHH
Q 012504 72 LIRAYAKTSCSIESIKLFDEMLKTGLRPD----NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDS-D----KYIGNTL 142 (462)
Q Consensus 72 li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 142 (462)
....+...|++++|++++++..+.....+ ...+..+..++...|++++|...++...+..... + ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 35567788999999999998887532211 1245556667778888888888888877643211 1 1234455
Q ss_pred HHHHHhcCChhHHHHHHhcCC-------CC----ChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCC----CCCHHHHHH
Q 012504 143 LRMYAACKEIDVAKAVFEEMP-------VR----DVVSWSSMIAGFVACDSPSDALKVFHRMKLANE----SPNSVTLVS 207 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~-------~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~ 207 (462)
...+...|++..+...+.... .+ ....+..+...+...|+++.+...+........ ......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 566667777777766665432 11 112344455566667777777777666544211 112233334
Q ss_pred HHHHHhcccchHhHHHHHHHHHHhC----CCc--hHhHHHHHHHHHHhcCChHHHHHHHhhccCC-------ChhhHHHH
Q 012504 208 LVSACTSLINVRAGESIHSYAVVNG----LEL--DVALGTALVEMYSKCGHVEKAFKVFNLMREK-------NLQSWTIM 274 (462)
Q Consensus 208 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l 274 (462)
....+...++...+...+.+..... ..+ ....+..+...+...|++++|...+....+. ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 4444555566666555555444321 001 1223344455555666666666666554431 11233444
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHH
Q 012504 275 ISGLADNGRGNYAISLFAKMIQT----GLKPDS-ISFSAILSACSHLGLVDEGKNYFDEM 329 (462)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 329 (462)
...+...|++++|...+++.... +..|+. ..+..+...+...|++++|.+.+++.
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555666666666655554421 222221 23444445555555555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=8.1e-09 Score=89.56 Aligned_cols=182 Identities=8% Similarity=-0.012 Sum_probs=144.3
Q ss_pred ChHHHHHHHhhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 012504 252 HVEKAFKVFNLMRE----KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 252 ~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
..++|..+|++..+ .+...|...+..+...|+++.|..+|+++...........|...+..+.+.|+.+.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888887653 34567888889999999999999999999876433334578888888999999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHH-HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCC
Q 012504 328 EMARVYNIKPTMEHYGCMVDM-LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPE 404 (462)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~ 404 (462)
.+.+. .+.+...|...... +...|+.+.|..+|+.+.. +.+...|...+..+...|+. +.|..+|+++.+..|.
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~-~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED-NNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHSSSS
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCC
Confidence 99863 33344555544443 3446899999999998854 34678899999999999999 9999999999998776
Q ss_pred CCc----hHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 405 LGA----NYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 405 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
++. .|...+..-...|+.+.+..+++++.+.-
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 543 67777887788899999999999887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=3e-10 Score=100.22 Aligned_cols=230 Identities=8% Similarity=-0.097 Sum_probs=164.4
Q ss_pred cCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc--chHhHHHHHHHHHHhCCCchHhHH-HHHHHHHHhcCChHH
Q 012504 179 ACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI--NVRAGESIHSYAVVNGLELDVALG-TALVEMYSKCGHVEK 255 (462)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 255 (462)
..|++++|+.+++...+.. +-+...+..+..++...+ +++++...+..+.+.. +.+...+ ......+...+.+++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHH
Confidence 3455778888888887753 335556666665555544 5788888999888876 3344444 455677888899999
Q ss_pred HHHHHhhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHh
Q 012504 256 AFKVFNLMREK---NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARV 332 (462)
Q Consensus 256 a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 332 (462)
|+..++.+.+. +..+|..+...+...|++++|...+.+.... .|+. ..+...+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~- 236 (334)
T d1dcea1 163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL- 236 (334)
T ss_dssp HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH-
Confidence 99999988864 4578888889999999988876665544432 1211 1122334445566677777777765
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 333 YNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
.-+++...+..+...+...|++++|...+.+... .| +...+..+...+...|+. ++|...++++.+++|.....|.
T Consensus 237 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 -GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE-KETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp -SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGH-HHHHHHHHHHHHHCGGGHHHHH
T ss_pred -hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCcccHHHHH
Confidence 3345556666777788888999999999988653 33 456777788899999999 9999999999999999888888
Q ss_pred HHHHHHhh
Q 012504 411 LAASVSSL 418 (462)
Q Consensus 411 ~l~~~~~~ 418 (462)
.|...+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 78766653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=3.8e-10 Score=99.50 Aligned_cols=255 Identities=7% Similarity=-0.077 Sum_probs=180.2
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHH-HHH---HHHH-------HhcccchHhHHHHHHHHHHhCCCchHhHH
Q 012504 172 SMIAGFVACDSPSDALKVFHRMKLANESPNSVT-LVS---LVSA-------CTSLINVRAGESIHSYAVVNGLELDVALG 240 (462)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~---l~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 240 (462)
.++....+.+..++|++++++..+. .|+..+ |+. ++.. +...|+++++...++...+.. +.+...+
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 3333334444558899999988774 465443 322 2222 233456788999999988876 5677777
Q ss_pred HHHHHHHHhcC--ChHHHHHHHhhccC---CChhhHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 012504 241 TALVEMYSKCG--HVEKAFKVFNLMRE---KNLQSWT-IMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACS 314 (462)
Q Consensus 241 ~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 314 (462)
..+..++...+ ++++|...+.++.+ ++...+. .....+...+.+++|+..++++...+. -+...|..+...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 77777777665 48899999988764 3445544 445677788999999999999888643 25678888888888
Q ss_pred ccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 012504 315 HLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNM--PTEPNAVILRSFLGACRNHGQVLYLDD 392 (462)
Q Consensus 315 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~ 392 (462)
..|++++|...++..... .|+ ...+...+...+..+++...+... ..+++...+..+...+...++. ..+.
T Consensus 190 ~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-~~a~ 262 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSE-LESC 262 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHH-HHHH
T ss_pred HhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhH-HHHH
Confidence 888888877666555432 121 112233445556666676666554 2233444555567777888899 9999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 393 NLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 393 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
..+.+....+|.+..++..++.+|...|++++|+++++...+.++
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999999999999999999988654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=2e-08 Score=81.01 Aligned_cols=121 Identities=7% Similarity=-0.173 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHH
Q 012504 301 PDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT-EP-NAVILRSFL 378 (462)
Q Consensus 301 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~l~ 378 (462)
|+...+......+.+.|++++|+..|++.... -+.+...|..+..+|.+.|++++|+..|+.+.. .| +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 66677777777888888888888888887764 234577788888888888888888888877643 33 467777788
Q ss_pred HHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHH
Q 012504 379 GACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
.+|...|++ +.|...++++.++.|++...+...+..+...+....
T Consensus 80 ~~~~~l~~~-~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 124 (201)
T d2c2la1 80 QCQLEMESY-DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124 (201)
T ss_dssp HHHHHTTCH-HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhH
Confidence 888888888 888888888888777666555555555544443333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=6.1e-08 Score=70.18 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=57.2
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHH
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWD 423 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 423 (462)
...+.+.|++++|+..|+++.. +.+...|..+..++...|++ +.|...++++.++.|+++..|..++.++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY-QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccc-cccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 4455566666666666666522 33455666666666666666 66666666666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCC
Q 012504 424 TAAELMVAINQKGL 437 (462)
Q Consensus 424 ~A~~~~~~~~~~~~ 437 (462)
+|+..|++..+..+
T Consensus 89 ~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 89 EAKRTYEEGLKHEA 102 (117)
T ss_dssp HHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhCC
Confidence 66666666665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=2.4e-07 Score=79.29 Aligned_cols=192 Identities=9% Similarity=-0.029 Sum_probs=117.8
Q ss_pred HHHHHHhcCChHHHHHHHhhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC-CCHHHHHH
Q 012504 243 LVEMYSKCGHVEKAFKVFNLMRE-----KN----LQSWTIMISGLADNGRGNYAISLFAKMIQT----GLK-PDSISFSA 308 (462)
Q Consensus 243 l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~ 308 (462)
....|...|++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|.+.+++..+. |.. ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 35566777777777777766543 11 246777777788888888888887766542 111 11234555
Q ss_pred HHHHhh-ccCcHHHHHHHHHHHHHhc---CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----C-HHHH
Q 012504 309 ILSACS-HLGLVDEGKNYFDEMARVY---NIKPT-MEHYGCMVDMLGRAGLIEEAYHIIRNMPT----EP----N-AVIL 374 (462)
Q Consensus 309 ll~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~----~-~~~~ 374 (462)
+...|. ..|++++|...+++..... +.++. ..++..+...|...|++++|.+.|+++.. .+ . ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 555553 4588888888888775421 11111 45577788888888888888888877521 11 1 1233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHhh--cCCHHHHHHHHHHHhcC
Q 012504 375 RSFLGACRNHGQVLYLDDNLGKLLLKLEPELGA-----NYVLAASVSSL--SGNWDTAAELMVAINQK 435 (462)
Q Consensus 375 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 435 (462)
...+..+...|+. ..|...++++.+..|..+. ....++.++.. .+.+++|+..|+.+.+.
T Consensus 203 ~~~~~~~l~~~d~-~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 203 LKKGLCQLAATDA-VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhccH-HHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 4455566778888 8888888888888765433 23445555544 34578888877655443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.4e-07 Score=68.25 Aligned_cols=104 Identities=11% Similarity=-0.055 Sum_probs=82.0
Q ss_pred HHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCh
Q 012504 310 LSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQV 387 (462)
Q Consensus 310 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 387 (462)
...+...|++++|+..|++..+. -+.+...|..+..+|...|++++|+..++.... +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 45567778888888888888764 244577788888888888888888888887632 45677888888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 388 LYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 388 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
++|...++++.+..|+++.++..+..+-
T Consensus 88 -~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 88 -EEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp -HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 9999999999999998887777766553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=2e-06 Score=73.33 Aligned_cols=193 Identities=12% Similarity=0.022 Sum_probs=110.9
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhHHC----CCCC-CHHHHHHHHHHHhcccchHhHHHHHHHHHHhC-----CCchHhHH
Q 012504 171 SSMIAGFVACDSPSDALKVFHRMKLA----NESP-NSVTLVSLVSACTSLINVRAGESIHSYAVVNG-----LELDVALG 240 (462)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 240 (462)
......|...|++++|.+.|.+.... +-++ -..+|..+..+|.+.|++++|...++...+.. ......++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 34466777788888888888776442 1111 12466777777778888888887777665431 11123345
Q ss_pred HHHHHHHHh-cCChHHHHHHHhhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-----H-H
Q 012504 241 TALVEMYSK-CGHVEKAFKVFNLMRE-----KN----LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPD-----S-I 304 (462)
Q Consensus 241 ~~l~~~~~~-~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~-~ 304 (462)
..+...|.. .|++++|++.+++..+ .+ ..++..+...+...|++++|...|++......... . .
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 555555543 5777777777766542 11 23466667777777777777777777665421111 1 1
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHHh--cCCHHHHHHHHHhCC
Q 012504 305 SFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT------MEHYGCMVDMLGR--AGLIEEAYHIIRNMP 366 (462)
Q Consensus 305 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~--~~~~~~A~~~~~~~~ 366 (462)
.+...+..+...|+++.|...+++..+. .|+ ......++.++.. .+.+++|+..|+.+.
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~---~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSE---DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 1223333455567777777777776532 221 1233445555543 234677777776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.62 E-value=6.3e-08 Score=69.47 Aligned_cols=90 Identities=13% Similarity=-0.147 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 012504 343 GCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSG 420 (462)
Q Consensus 343 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 420 (462)
..+...+.+.|++++|...|+++.. +.+...|..+..++...|++ +.|+..++++.+++|+++.++..++.+|...|
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-GLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhH-HHhhcccccccccccccccchHHHHHHHHHCC
Confidence 3456778899999999999998743 34688999999999999999 99999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHh
Q 012504 421 NWDTAAELMVAIN 433 (462)
Q Consensus 421 ~~~~A~~~~~~~~ 433 (462)
++++|++.+++..
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998753
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=1.3e-07 Score=76.04 Aligned_cols=96 Identities=6% Similarity=-0.050 Sum_probs=78.7
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHH
Q 012504 266 KNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGC 344 (462)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 344 (462)
|+...+......|.+.|++++|+..|++.+... +-+...|..+..+|.+.|++++|+..|+... .+.|+ ...|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHH
Confidence 444556677888999999999999999988864 3366788888889999999999999999987 44554 778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 012504 345 MVDMLGRAGLIEEAYHIIRNM 365 (462)
Q Consensus 345 l~~~~~~~~~~~~A~~~~~~~ 365 (462)
+..+|.+.|++++|+..|+++
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999998876
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.4e-06 Score=69.06 Aligned_cols=141 Identities=9% Similarity=-0.050 Sum_probs=96.2
Q ss_pred HHHHHhcCChHHHHHHHhhccCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 012504 244 VEMYSKCGHVEKAFKVFNLMREKNLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGK 323 (462)
Q Consensus 244 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 323 (462)
...+...|+++.|++.|.++..++..+|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4556777888888888888877788888888888888888888888888888763 224567777888888888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcC
Q 012504 324 NYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLE 402 (462)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~ 402 (462)
..|++.... .+.+... .+...|. ..+. ...++..+..++...|++ +.|.+.++.+.+..
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~-~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEW-KKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcC
Confidence 888877652 1222100 0000000 0011 124455667778888888 88888888888877
Q ss_pred CCC
Q 012504 403 PEL 405 (462)
Q Consensus 403 p~~ 405 (462)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=3.1e-07 Score=70.55 Aligned_cols=117 Identities=7% Similarity=-0.083 Sum_probs=94.1
Q ss_pred HHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCC
Q 012504 309 ILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQ 386 (462)
Q Consensus 309 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 386 (462)
-...|.+.|++++|...|++..+. -+.+...|..+..+|...|++++|.+.|+.+.. +.+...|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345677889999999999998874 234578888899999999999999999988733 4467889999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCchHHHHHHHH--hhcCCHHHHHHH
Q 012504 387 VLYLDDNLGKLLLKLEPELGANYVLAASVS--SLSGNWDTAAEL 428 (462)
Q Consensus 387 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 428 (462)
+ ++|...++++.++.|+++.++..+..+. ...+.+++|+..
T Consensus 94 ~-~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 F-RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp H-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9 9999999999999999988877776654 344556666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=4e-07 Score=72.28 Aligned_cols=88 Identities=8% Similarity=-0.016 Sum_probs=81.6
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHH
Q 012504 346 VDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTA 425 (462)
Q Consensus 346 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 425 (462)
...+...|++++|++.|+++. +|++.+|..+..+|...|++ +.|...|+++++++|+.+.+|..++.+|.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~-~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNM-TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 456788999999999999975 57888999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 012504 426 AELMVAINQK 435 (462)
Q Consensus 426 ~~~~~~~~~~ 435 (462)
+..|++....
T Consensus 90 ~~~~~kAl~~ 99 (192)
T d1hh8a_ 90 IKDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.9e-07 Score=71.85 Aligned_cols=96 Identities=11% Similarity=-0.033 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 012504 342 YGCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLS 419 (462)
Q Consensus 342 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 419 (462)
+......|.+.|++++|+..|+++.. +.+...|..+..+|...|++ +.|...|+++++++|.++.+|..++.++...
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY-GYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhcccc-chHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 33456678899999999999998743 45788999999999999999 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCc
Q 012504 420 GNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 420 g~~~~A~~~~~~~~~~~~~ 438 (462)
|++++|...+++..+.++.
T Consensus 92 g~~~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPH 110 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHcCCC
Confidence 9999999999999876643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.51 E-value=2.1e-05 Score=65.68 Aligned_cols=147 Identities=9% Similarity=-0.044 Sum_probs=89.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh----hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cC
Q 012504 282 GRGNYAISLFAKMIQTGLKPDSISFSAILSAC----SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AG 353 (462)
Q Consensus 282 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 353 (462)
++.+.|...++...+.|.... ...+...+ ........+...+..... ..+...+..|...|.. ..
T Consensus 88 ~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~ 160 (265)
T d1ouva_ 88 QNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPK 160 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCC
T ss_pred hhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCccc
Confidence 455666666666666543211 11111111 223445556666655543 2344556666666654 34
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCCHHHH
Q 012504 354 LIEEAYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL----SGNWDTA 425 (462)
Q Consensus 354 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 425 (462)
+...+...++......+......+...|.. ..+. +.|..+|+++.+.+ ++..+..|+.+|.. ..+.++|
T Consensus 161 ~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~-~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A 237 (265)
T d1ouva_ 161 DLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF-KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQA 237 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred ccccchhhhhccccccccccccchhhhcccCcccccch-hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHH
Confidence 566677777666545566666666666655 4567 88888888887764 45577788888875 3478888
Q ss_pred HHHHHHHhcCCCc
Q 012504 426 AELMVAINQKGLN 438 (462)
Q Consensus 426 ~~~~~~~~~~~~~ 438 (462)
.++|++..+.|..
T Consensus 238 ~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 238 IENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHTCH
T ss_pred HHHHHHHHHCcCH
Confidence 8888888776654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.2e-06 Score=63.33 Aligned_cols=106 Identities=10% Similarity=-0.034 Sum_probs=82.6
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCC---HHHHHHHHHhCCC-CCCH---HHHHHHHH
Q 012504 307 SAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGL---IEEAYHIIRNMPT-EPNA---VILRSFLG 379 (462)
Q Consensus 307 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-~~~~---~~~~~l~~ 379 (462)
..++..+...+++++|++.|+..... -+.+..++..+..++.+.++ +++|+.+|+++.. .|++ .++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35677778889999999999999874 24467888888888887554 4569999988754 3333 36778889
Q ss_pred HHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012504 380 ACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASV 415 (462)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 415 (462)
+|.+.|++ +.|...++++++++|++..+...+..+
T Consensus 81 ~y~~~g~~-~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEY-EKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhh-HHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999 999999999999999988666555433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=2.4e-06 Score=66.19 Aligned_cols=133 Identities=11% Similarity=-0.087 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDML 349 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (462)
.+......+.+.|++++|+..|++.+........ ..+.-......+. ..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchhH--------HHHHHHHHHHH
Confidence 3445566777788888888888777653110000 0000001111111 23577788899
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHH
Q 012504 350 GRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTA 425 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 425 (462)
.+.|++++|+..++.... +.++..+..+..+|...|++ +.|...|+++.+++|+++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~-~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF-ELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988743 34788899999999999999 9999999999999999999988888887666555543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=9.8e-08 Score=88.37 Aligned_cols=96 Identities=11% Similarity=-0.046 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 012504 339 MEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL 418 (462)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 418 (462)
...+..+...+.+.|+.++|...+...........+..+...+...|++ +.|...++++.++.|++..+|..|+.++..
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~-~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQT-SQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 3444555555555566555555443332111123444555566666666 666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHhcC
Q 012504 419 SGNWDTAAELMVAINQK 435 (462)
Q Consensus 419 ~g~~~~A~~~~~~~~~~ 435 (462)
.|+..+|+..|.+....
T Consensus 199 ~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp TTCHHHHHHHHHHHHSS
T ss_pred cCCHHHHHHHHHHHHhC
Confidence 66666666666655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=3.3e-06 Score=65.37 Aligned_cols=66 Identities=8% Similarity=-0.101 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+|..+..+|.+.|++ +.|...++++++++|+++.++..++.+|...|++++|+..|+...+.++.
T Consensus 63 ~~~~nla~~y~k~~~~-~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~ 128 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAF-SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 128 (170)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhhhc-ccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 4566788889999999 99999999999999999999999999999999999999999999886653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.7e-06 Score=63.46 Aligned_cols=89 Identities=8% Similarity=-0.011 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch-------HHHHHH
Q 012504 344 CMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN-------YVLAAS 414 (462)
Q Consensus 344 ~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~~~l~~ 414 (462)
.+...|.+.|++++|++.|++... +.+...+..+..+|...|++ +.|...+++++++.|+++.. |..++.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY-NKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCch-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 344555555566666555555421 23455555555566666666 66666666666555554432 333444
Q ss_pred HHhhcCCHHHHHHHHHHHh
Q 012504 415 VSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 415 ~~~~~g~~~~A~~~~~~~~ 433 (462)
.+...+++++|++.+++..
T Consensus 88 ~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 4455556666666655544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.22 E-value=1.9e-05 Score=60.77 Aligned_cols=141 Identities=8% Similarity=-0.110 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 012504 269 QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDM 348 (462)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (462)
..+......+.+.|++.+|+..|++.... .|. .. ....+. ......+ ...+|..+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~----------~~-~~~~~~-~~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM----------EY-GLSEKE-SKASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT----------CC-SCCHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH----------hh-ccchhh-hhhcchh--------HHHHHHhHHHH
Confidence 34555666777777788887777765542 000 00 000000 0111111 12356778888
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHH-H
Q 012504 349 LGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDT-A 425 (462)
Q Consensus 349 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A 425 (462)
|.+.|++++|+..++.+.. +.+...|..+..++...|++ +.|...|+++.+++|+++.+...+..+....+...+ .
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~-~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF-ESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD 152 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999988743 45788898999999999999 999999999999999999888888887766655443 4
Q ss_pred HHHHHHH
Q 012504 426 AELMVAI 432 (462)
Q Consensus 426 ~~~~~~~ 432 (462)
.+++..|
T Consensus 153 kk~~~~~ 159 (168)
T d1kt1a1 153 RRTYANM 159 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=1.3e-06 Score=63.12 Aligned_cols=96 Identities=7% Similarity=-0.120 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHhcCCCC--CchHHHHHHHH
Q 012504 343 GCMVDMLGRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVL--YLDDNLGKLLLKLEPEL--GANYVLAASVS 416 (462)
Q Consensus 343 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~--~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 416 (462)
..++..+...+++++|.+.|++... +.++.++..+..++.+.++.. +.|+.+++++.+..|.+ ..++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4577888899999999999999743 567888888999888755541 56999999999887755 34788999999
Q ss_pred hhcCCHHHHHHHHHHHhcCCCc
Q 012504 417 SLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 417 ~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+.|++++|++.|+++.+.++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhHHHHHHHHHHHHhCcC
Confidence 9999999999999999887654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.18 E-value=9.6e-06 Score=61.37 Aligned_cols=125 Identities=8% Similarity=-0.174 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 012504 270 SWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDML 349 (462)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (462)
.+......+.+.|++.+|+..|.++...- |.. .............. ....+|..+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 44555666777778888877777776531 100 00000000000000 1123566777888
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012504 350 GRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVS 416 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 416 (462)
.+.|++++|++.++.+.. +.+...|..+..++...|++ +.|...|+++.+++|++..+...+..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~-~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFL-EEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888888888888877632 34677888888888888888 8888888888888888877766665544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.18 E-value=0.0011 Score=54.70 Aligned_cols=223 Identities=12% Similarity=-0.051 Sum_probs=126.7
Q ss_pred hhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhc----ccchHhHHHHHHHHHHhCCCchHhHHHH
Q 012504 167 VVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTS----LINVRAGESIHSYAVVNGLELDVALGTA 242 (462)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 242 (462)
+..+..|...+.+.+++++|++.|++..+.| +...+..|...+.. ..+...+...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455555556666677777777777766654 33444444444443 345666666666666554 1222223
Q ss_pred HHHHHHh----cCChHHHHHHHhhccCCC-hhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 012504 243 LVEMYSK----CGHVEKAFKVFNLMREKN-LQSWTIMISGLAD----NGRGNYAISLFAKMIQTGLKPDSISFSAILSAC 313 (462)
Q Consensus 243 l~~~~~~----~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 313 (462)
+...+.. ..+.+.|...++...+.+ ......+...+.. ......+...+...... .+...+..+...+
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~ 152 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLY 152 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhh
Confidence 3333322 345666666666654432 2333333333332 33455566666665553 2445555555555
Q ss_pred hc----cCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--
Q 012504 314 SH----LGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AGLIEEAYHIIRNMPTEPNAVILRSFLGACRN-- 383 (462)
Q Consensus 314 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-- 383 (462)
.. ..+...+..+++...+. .+......+...|.. ..++++|...|+......++..+..|...|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~ 228 (265)
T d1ouva_ 153 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 228 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred ccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCC
Confidence 43 45566777777766543 244555556555554 56788888888887555566777777777664
Q ss_pred --cCChHHHHHHHHHHHHhcCC
Q 012504 384 --HGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 384 --~~~~~~~a~~~~~~~~~~~p 403 (462)
..+. +.|..+|+++.+.++
T Consensus 229 g~~~n~-~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 229 GVTRNE-KQAIENFKKGCKLGA 249 (265)
T ss_dssp SSSCCS-TTHHHHHHHHHHHTC
T ss_pred CCccCH-HHHHHHHHHHHHCcC
Confidence 3367 788888888877654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.17 E-value=1.1e-05 Score=61.14 Aligned_cols=66 Identities=9% Similarity=-0.039 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.++..+..+|.+.|++ +.|...++++++.+|.+..+|..++.++...|++++|+..|+...+.++.
T Consensus 68 ~~~~Nla~~~~~l~~~-~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 68 SCNLNLATCYNKNKDY-PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhhHHHHHHHhccc-chhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4667788899999999 99999999999999999999999999999999999999999999877653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=8.7e-06 Score=62.86 Aligned_cols=131 Identities=9% Similarity=-0.070 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHH
Q 012504 271 WTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIK-PTMEHYGCMVDML 349 (462)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 349 (462)
+......+...|++++|+..|.++... ............. . .+. .....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~------~----~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG------A----KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH------G----GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH------H----HhChhhHHHHHHHHHHH
Confidence 445566677778888888877776531 0000000000000 0 111 2355677788889
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHH
Q 012504 350 GRAGLIEEAYHIIRNMPT--EPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDT 424 (462)
Q Consensus 350 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 424 (462)
.+.|++++|+..++.+.. +.+...|..+..++...|++ +.|...|+++.++.|++..+...+..+..+.....+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~-~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY-DQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988743 45678888899999999999 999999999999999998888877776655444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.11 E-value=1.3e-05 Score=56.92 Aligned_cols=88 Identities=6% Similarity=-0.120 Sum_probs=49.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcC
Q 012504 274 MISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAG 353 (462)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 353 (462)
+...+.+.|++++|+..|++....... +...|..+..++.+.|++++|+..+++..+. -+.+...+..+..+|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence 344555566666666666666554211 3455555566666666666666666665542 1223555555666666666
Q ss_pred CHHHHHHHHHh
Q 012504 354 LIEEAYHIIRN 364 (462)
Q Consensus 354 ~~~~A~~~~~~ 364 (462)
++++|.+.+++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66666665554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=6e-06 Score=63.80 Aligned_cols=68 Identities=7% Similarity=-0.120 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 370 NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
....+..+..++.+.|++ +.|+..++++++++|+++.+|..++.+|...|++++|++.|+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~-~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~ 143 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDW-QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 143 (169)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhhccc-chhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 345677788899999999 99999999999999999999999999999999999999999999876543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.07 E-value=0.0024 Score=54.20 Aligned_cols=136 Identities=7% Similarity=-0.073 Sum_probs=67.3
Q ss_pred CCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHH
Q 012504 64 PPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLL 143 (462)
Q Consensus 64 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (462)
||..--..+..-|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++... + +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHHHH
Confidence 4544445556666677777777777764432 556666666666666665554422 1 344666666
Q ss_pred HHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhccc
Q 012504 144 RMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLI 216 (462)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 216 (462)
..+.......-+.- .......+......++..|-..|.+++...+++..... -..+...++.++..+++.+
T Consensus 77 ~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 66666555544322 11112223444455666677777777777777765432 2345555666666666643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.03 E-value=9.6e-06 Score=62.52 Aligned_cols=66 Identities=6% Similarity=-0.051 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCc
Q 012504 372 VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGLN 438 (462)
Q Consensus 372 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 438 (462)
.+|..+..+|...|++ +.|+..++++++++|+++.++..++.+|...|++++|+..|+.+.+.++.
T Consensus 65 ~~~~Nla~~~~~l~~~-~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~ 130 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREY-TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130 (168)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HHHHhHHHHHHHhhhc-ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3566677889999999 99999999999999999999999999999999999999999999887653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=0.0033 Score=53.38 Aligned_cols=238 Identities=13% Similarity=0.036 Sum_probs=140.1
Q ss_pred CCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHH
Q 012504 99 PDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFV 178 (462)
Q Consensus 99 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 178 (462)
|+..-...+...|.+.|.++.|..++..+ .-|..++..+.+.++++.|.+.+.+.. +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 55555566777788999999999998743 334678888899999999999887654 5668888888888
Q ss_pred cCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHH
Q 012504 179 ACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFK 258 (462)
Q Consensus 179 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 258 (462)
+......+ .+.......++.....++..|-..|.+++...+++...... +.+...++.++..|++.+ .++..+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHH
Confidence 77665443 22233344566667788899999999999999998876442 566778888999998865 455555
Q ss_pred HHhhccC-CCh----------hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 012504 259 VFNLMRE-KNL----------QSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFD 327 (462)
Q Consensus 259 ~~~~~~~-~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 327 (462)
.+..... -++ ..|..++-.|.+.|+++.|..+. ... .++..-....+..+.+..+++...++..
T Consensus 154 ~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 154 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 5555432 121 13555666666666666665443 222 2333334444555566666665555555
Q ss_pred HHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012504 328 EMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRN 364 (462)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 364 (462)
...+. .|+ ..+.++......-+..+..+.+++
T Consensus 229 ~yL~~---~p~--~i~~lL~~v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 229 FYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSK 260 (336)
T ss_dssp HHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHc---CHH--HHHHHHHHhccCCCHHHHHHHHHh
Confidence 54432 232 334444444444445444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.94 E-value=1.4e-05 Score=62.07 Aligned_cols=119 Identities=12% Similarity=-0.016 Sum_probs=83.0
Q ss_pred HHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 012504 311 SACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYL 390 (462)
Q Consensus 311 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (462)
......|++++|...|......+ +....- .+ ..+.+- ...-..+. +.....+..+...+...|++ +.
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~---rG~~l~-----~~-~~~~w~--~~~r~~l~-~~~~~a~~~la~~~~~~g~~-~~ 85 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREW---RGPVLD-----DL-RDFQFV--EPFATALV-EDKVLAHTAKAEAEIACGRA-SA 85 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC---CSSTTG-----GG-TTSTTH--HHHHHHHH-HHHHHHHHHHHHHHHHTTCH-HH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC---cccccc-----cC-cchHHH--HHHHHHHH-HHHHHHHHHHHHHHHHCCCc-hH
Confidence 45567788888888888877532 211000 00 001110 00000000 11245677788999999999 99
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh-----cCCCccCCc
Q 012504 391 DDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN-----QKGLNKVPG 442 (462)
Q Consensus 391 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 442 (462)
|...++++.+.+|.+...|..++.+|.+.|++.+|++.|+.+. +.|+.|.+.
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 9999999999999999999999999999999999999999874 468887664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=7.9e-05 Score=54.11 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=44.3
Q ss_pred HHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---Ch-------hhHHHHHHH
Q 012504 208 LVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---NL-------QSWTIMISG 277 (462)
Q Consensus 208 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~-------~~~~~l~~~ 277 (462)
+...+...|++++|...|.+.++.+ +.+...+..+..+|.+.|++++|+..++++.+- +. .+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555443 334445555555555555555555555544321 11 234445555
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 012504 278 LADNGRGNYAISLFAKMIQ 296 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~ 296 (462)
+...+++++|++.|++...
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 5566666666666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=5.7e-06 Score=76.19 Aligned_cols=217 Identities=9% Similarity=-0.052 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHCCCCCC-cchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCcc-chHhHHHHHHHhcCChhHHHHHHhc
Q 012504 84 ESIKLFDEMLKTGLRPD-NFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDK-YIGNTLLRMYAACKEIDVAKAVFEE 161 (462)
Q Consensus 84 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 161 (462)
+|.+.|++..+. +|+ ...+..+-.++...+++++| +++++..+ |+- ..++.....+ ...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw--~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW--NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH--HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH--HHHHHHHHHHHHH
Confidence 577777777663 444 33455555556666666654 66665543 211 1111111111 1113344444444
Q ss_pred CCC----CChhhHHHHHHH--HHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCc
Q 012504 162 MPV----RDVVSWSSMIAG--FVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLEL 235 (462)
Q Consensus 162 ~~~----~~~~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 235 (462)
... ++..-....... ....+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+.......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 321 121111111111 112233444444433332221 2344455666666777777777777666555432
Q ss_pred hHhHHHHHHHHHHhcCChHHHHHHHhhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 012504 236 DVALGTALVEMYSKCGHVEKAFKVFNLMRE--K-NLQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSA 312 (462)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 312 (462)
....+..++..+...|++++|...|++..+ | +..+|+.+...+...|+..+|...|.+..... +|-..++..|...
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 124566677778888888888888877663 3 44678888888888888888888888777653 3455666666655
Q ss_pred hh
Q 012504 313 CS 314 (462)
Q Consensus 313 ~~ 314 (462)
+.
T Consensus 230 ~~ 231 (497)
T d1ya0a1 230 LS 231 (497)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.70 E-value=0.00011 Score=55.43 Aligned_cols=88 Identities=14% Similarity=-0.089 Sum_probs=61.3
Q ss_pred HHHHhcCCHHHHHHHHHhCCC----CC----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC-------
Q 012504 347 DMLGRAGLIEEAYHIIRNMPT----EP----------NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL------- 405 (462)
Q Consensus 347 ~~~~~~~~~~~A~~~~~~~~~----~~----------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~------- 405 (462)
..+.+.|++++|++.|++... .| ....|+.+..+|...|++ +.|...+++++++.|..
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~-~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF-DEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCcc-chhhHhhhhhhhcccccccccccc
Confidence 344455666666666655411 11 135677788888888888 88888888887653321
Q ss_pred ----CchHHHHHHHHhhcCCHHHHHHHHHHHhcC
Q 012504 406 ----GANYVLAASVSSLSGNWDTAAELMVAINQK 435 (462)
Q Consensus 406 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 435 (462)
..++..++.+|...|++++|+..|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 225778899999999999999999987653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.70 E-value=3.4e-05 Score=57.53 Aligned_cols=128 Identities=11% Similarity=0.056 Sum_probs=68.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc----------CcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHL----------GLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
|-+.+.+++|...|+...+.. +.++..+..+..++... +.+++|+..|++..+. -+.+...|..+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHH
Confidence 334455666666666666642 22444555555555432 2334455555555432 1122444444444
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHH
Q 012504 348 MLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAE 427 (462)
Q Consensus 348 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 427 (462)
+|...|++. ++... ..+.+ +.|...|+++.+++|++...+..|... ..|.+
T Consensus 84 ~y~~~g~~~------------~~~~~---------~~~~~-~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 84 AYTSFAFLT------------PDETE---------AKHNF-DLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHC------------CCHHH---------HHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHcccch------------hhHHH---------HHHhH-HHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 444332210 01100 11235 889999999999999988666666654 45666
Q ss_pred HHHHHhcCCC
Q 012504 428 LMVAINQKGL 437 (462)
Q Consensus 428 ~~~~~~~~~~ 437 (462)
++.+..+.|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 6666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00013 Score=49.65 Aligned_cols=73 Identities=14% Similarity=-0.051 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHH
Q 012504 341 HYGCMVDMLGRAGLIEEAYHIIRNMPT--------EP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVL 411 (462)
Q Consensus 341 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 411 (462)
.+-.+...+.+.|++++|...|++... .+ ...++..+..++.+.|++ ++|...++++++++|+++.++..
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~-~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL-DKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCCh-HHHHHHHHHHHHhCcCCHHHHHH
Confidence 344567777778888888777766521 12 256788899999999999 99999999999999999887777
Q ss_pred HHH
Q 012504 412 AAS 414 (462)
Q Consensus 412 l~~ 414 (462)
+..
T Consensus 86 l~~ 88 (95)
T d1tjca_ 86 LKY 88 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.53 E-value=0.00018 Score=59.44 Aligned_cols=128 Identities=11% Similarity=0.016 Sum_probs=87.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHhcCCHH
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPT-MEHYGCMVDMLGRAGLIE 356 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 356 (462)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 346789999999999988873 336678888889999999999999999998764 454 445555555554444444
Q ss_pred HHHHHHHhC--CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHH
Q 012504 357 EAYHIIRNM--PTEP-NAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYV 410 (462)
Q Consensus 357 ~A~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 410 (462)
++..-.... ..+| +...+......+...|+. +.|...++++.+..|..+..+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~-~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDY-EQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhcCCCCCcccc
Confidence 443322221 1123 233344445667888999 9999999999999888875544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.49 E-value=4.2e-05 Score=57.03 Aligned_cols=100 Identities=6% Similarity=-0.034 Sum_probs=66.5
Q ss_pred hccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 012504 314 SHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDN 393 (462)
Q Consensus 314 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 393 (462)
.+.+.+++|...|+...+. -|.+...+..+..+|...+++..+.+ ..+.+ +.|+.
T Consensus 8 ~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~-~~Ai~ 62 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMI-QEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHH-HHHHH
T ss_pred HHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHH-HHHHH
Confidence 3445566666666666542 12334555555555544443333322 23445 88999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHhhcCC-----------HHHHHHHHHHHhcCCCc
Q 012504 394 LGKLLLKLEPELGANYVLAASVSSLSGN-----------WDTAAELMVAINQKGLN 438 (462)
Q Consensus 394 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~ 438 (462)
.++++++++|+++.+|..++.+|...|+ +++|.+.|++..+..+.
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~ 118 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 118 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence 9999999999999999999999987654 68888888888766543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=0.001 Score=51.14 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHH----hcCCCCchhH
Q 012504 268 LQSWTIMISGLADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMAR----VYNIKPTMEH 341 (462)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 341 (462)
...+..+...+...|++++|+..++++.... +-+...|..++.++...|+..+|.+.|+++.+ ..|+.|+..+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3456667777778888888888888877753 23566777888888888888888877777633 2377777554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.00016 Score=49.14 Aligned_cols=68 Identities=12% Similarity=-0.063 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHhhcCCHHHHHHHHHHHhcCCCcc
Q 012504 371 AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL-------GANYVLAASVSSLSGNWDTAAELMVAINQKGLNK 439 (462)
Q Consensus 371 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 439 (462)
...+..+...+.+.|++ +.|...++++.+..|.+ ..++..|+.++.+.|++++|+..++++.+.++..
T Consensus 5 addc~~lG~~~~~~g~y-~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~ 79 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADY-YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (95)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC
Confidence 44455688899999999 99999999999875543 3468889999999999999999999998876543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.27 E-value=0.0017 Score=48.57 Aligned_cols=92 Identities=14% Similarity=0.003 Sum_probs=59.6
Q ss_pred hhccCcHHHHHHHHHHHHHhcCCCCc----------hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCC----
Q 012504 313 CSHLGLVDEGKNYFDEMARVYNIKPT----------MEHYGCMVDMLGRAGLIEEAYHIIRNMPT--------EPN---- 370 (462)
Q Consensus 313 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~---- 370 (462)
+...|++++|+..|++......-.|+ ...|+.+..+|.+.|++++|.+.+++... .++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34456666666666665543221121 24566777777788887777776666421 111
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCC
Q 012504 371 -AVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPEL 405 (462)
Q Consensus 371 -~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 405 (462)
...+..+..+|...|++ ++|...|+++.++.|..
T Consensus 99 ~~~a~~~~g~~~~~lg~~-eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRG-AEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhhHHh
Confidence 23566778899999999 99999999999875544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.15 E-value=0.0011 Score=54.44 Aligned_cols=119 Identities=7% Similarity=-0.080 Sum_probs=64.0
Q ss_pred HHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHH
Q 012504 177 FVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALVEMYSKCGHVEKA 256 (462)
Q Consensus 177 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 256 (462)
..+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+.. +.+...+..+..++...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 345677777777777776653 3455666777777777777777777777776664 33344444444444433333333
Q ss_pred HHHHhhcc---CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 012504 257 FKVFNLMR---EK-NLQSWTIMISGLADNGRGNYAISLFAKMIQT 297 (462)
Q Consensus 257 ~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 297 (462)
..-..... .+ +...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22211111 01 1122333344455566666666666666553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.25 Score=43.59 Aligned_cols=235 Identities=12% Similarity=0.025 Sum_probs=107.6
Q ss_pred HHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHH
Q 012504 143 LRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGE 222 (462)
Q Consensus 143 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 222 (462)
+..+.+.++++.....+...+ .+...-.....+....|+.++|...+..+-..|. ..+..+..+...+...|.+
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~l---- 152 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ---- 152 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS----
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCCC----
Confidence 455667777776665554322 2444455666677777888777777766654431 2222333333333222221
Q ss_pred HHHHHHHHhCCCchHhHHHHHHHHHHhcCChHHHHHHHhhccCC---------------------------ChhhHHHHH
Q 012504 223 SIHSYAVVNGLELDVALGTALVEMYSKCGHVEKAFKVFNLMREK---------------------------NLQSWTIMI 275 (462)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~l~ 275 (462)
+...+-.-+......|++..|..+...+... +......+.
T Consensus 153 -------------t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 219 (450)
T d1qsaa1 153 -------------DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAA 219 (450)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHH
Confidence 1111111222222333333333333333221 111112222
Q ss_pred HHHHH--cCChHHHHHHHHHHHHCC-CCCCHH-HH-HHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 012504 276 SGLAD--NGRGNYAISLFAKMIQTG-LKPDSI-SF-SAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLG 350 (462)
Q Consensus 276 ~~~~~--~~~~~~a~~~~~~m~~~~-~~p~~~-~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (462)
.++.+ ..+.+.+...+....... ..++.. .. ..+.......+..+.+...+...... ..+.......+....
T Consensus 220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al 296 (450)
T d1qsaa1 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMAL 296 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHH
T ss_pred HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHH
Confidence 22222 235566666666655432 111111 11 11122223344455565555555432 223333333444455
Q ss_pred hcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 012504 351 RAGLIEEAYHIIRNMPTEPN--AVILRSFLGACRNHGQVLYLDDNLGKLLLK 400 (462)
Q Consensus 351 ~~~~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 400 (462)
..+++..+...+..+...+. ..-..-+..++...|+. +.|...|..+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~-~~A~~~~~~~a~ 347 (450)
T d1qsaa1 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRE-AEAKEILHQLMQ 347 (450)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCH-HHHHHHHHHHHT
T ss_pred HcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCCh-hhHHHHHHHHhc
Confidence 56677777777776654321 22223345666677777 777777766654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.03 E-value=0.12 Score=35.49 Aligned_cols=141 Identities=12% Similarity=0.027 Sum_probs=87.3
Q ss_pred HHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHHHhCCCCccchHhHHHHHHHhcCChhHH
Q 012504 76 YAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIFKVGLDSDKYIGNTLLRMYAACKEIDVA 155 (462)
Q Consensus 76 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 155 (462)
+...|.+++..++..+...+. +..-||.++-.....-+-+...++++.+-+. -|. ..++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHH
Confidence 455677888888887776642 4555666665555555555555554443222 111 122333333
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCC
Q 012504 156 KAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLE 234 (462)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (462)
...+-.+.. +....+..+....++|+-+.-.++++.+.+.+ +|++.....+..+|.+.|+..++..++.+.-+.|+.
T Consensus 76 v~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333322221 23345556677788888888888888866644 678888888888898999988888888888888753
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.78 E-value=0.07 Score=38.00 Aligned_cols=81 Identities=7% Similarity=-0.085 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCCHHHH
Q 012504 354 LIEEAYHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSL----SGNWDTA 425 (462)
Q Consensus 354 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A 425 (462)
+.++|.+++++.....++.....|...|.. ..+. +.|..+|+++.+.+ ++.....|+.+|.. ..+.++|
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~-~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDL-RKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhh-HHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence 444444444444323333333334433332 2345 66666666665543 23355556666654 3466677
Q ss_pred HHHHHHHhcCCC
Q 012504 426 AELMVAINQKGL 437 (462)
Q Consensus 426 ~~~~~~~~~~~~ 437 (462)
.++|+...+.|.
T Consensus 115 ~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 115 VKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 777776666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.027 Score=39.19 Aligned_cols=72 Identities=11% Similarity=-0.000 Sum_probs=48.9
Q ss_pred CCchhHHHHHHHHHHhcC---CHHHHHHHHHhCCC-CC-CH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCch
Q 012504 336 KPTMEHYGCMVDMLGRAG---LIEEAYHIIRNMPT-EP-NA-VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGAN 408 (462)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~-~~-~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 408 (462)
.|+..+--....++.+.. +.++++.+|+++.. .| +. ..+..|.-+|.+.|++ +.|...++++++.+|++..+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy-~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY-SMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHccCCCcHHH
Confidence 345555555666666554 45677888877632 23 32 4566677788888888 88888888888888887644
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.22 E-value=0.23 Score=35.11 Aligned_cols=111 Identities=7% Similarity=-0.101 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh----cCCHHHH
Q 012504 283 RGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGR----AGLIEEA 358 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A 358 (462)
++++|+++|++..+.|.. .....+. .....+.++|..++++..+. + ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 567777777777776522 2222222 33456777888888777653 3 34445555555543 4567888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhcCC
Q 012504 359 YHIIRNMPTEPNAVILRSFLGACRN----HGQVLYLDDNLGKLLLKLEP 403 (462)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~p 403 (462)
.++|++....-++.....|...|.. ..+. ..|..+++++.+.+.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~-~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNE-KQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCH-HHHHHHHHHHHHCCC
Confidence 8888877555566666666666655 3466 788888888776543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.75 E-value=0.37 Score=33.07 Aligned_cols=141 Identities=10% Similarity=0.058 Sum_probs=98.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHH
Q 012504 278 LADNGRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEE 357 (462)
Q Consensus 278 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 357 (462)
+...|..++..+++.+.... .+..-|+.++.-....-+-+...+.++.+-+-+.+.| +++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 45567888888888877764 2555677777666666677777777777755433333 333444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHhcCCC
Q 012504 358 AYHIIRNMPTEPNAVILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAINQKGL 437 (462)
Q Consensus 358 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 437 (462)
....+-.+. .+...+...+......|+- +.-..+++.+.+.+..+|.....++.+|.+.|...++-.++.+.-++|+
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kk-d~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKR-DKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCH-HHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 444443333 2334455567778888888 8888888887777777778899999999999999999999999998887
Q ss_pred c
Q 012504 438 N 438 (462)
Q Consensus 438 ~ 438 (462)
.
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.32 E-value=0.59 Score=32.18 Aligned_cols=48 Identities=8% Similarity=-0.038 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCCCC-chHHHHHHHHhhcCCHHHHHHHHHHHhcCC
Q 012504 389 YLDDNLGKLLLKLEPELG-ANYVLAASVSSLSGNWDTAAELMVAINQKG 436 (462)
Q Consensus 389 ~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 436 (462)
+.++.+++.+.+.+|.+. ..+..|+.+|.+.|++++|.++++.+.+..
T Consensus 55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 345555555554444432 344455555555555555555555554433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=3.4 Score=35.87 Aligned_cols=342 Identities=12% Similarity=-0.011 Sum_probs=186.7
Q ss_pred CHHHHHHHhccCCCCCCcccHHHHHHHHHhCCCchhHHHHHHHHHHCCCCCCcchHHHHHHHhhhhcCchhHHHHHHHHH
Q 012504 49 SLHFTRSLFNNLPVTPPLFAYNTLIRAYAKTSCSIESIKLFDEMLKTGLRPDNFTYPFVVKACGRCLLIGIGGSVHSLIF 128 (462)
Q Consensus 49 ~~~~A~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 128 (462)
++......+...| ++...-.....+....|+.+.|...+..+-..|.. .+..+..+...+.
T Consensus 87 ~w~~~~~~~~~~p--~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~---------------- 147 (450)
T d1qsaa1 87 DWRGLLAFSPEKP--GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWR---------------- 147 (450)
T ss_dssp CHHHHHHHCCSCC--SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHH----------------
T ss_pred CHHHHHHhccCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHH----------------
Confidence 5555554443322 23333345566677778887887777776655432 3333434443332
Q ss_pred HhCCCCccchHhHHHHHHHhcCChhHHHHHHhcCCCCChhhHHHHHHHHHcCCChhHHHHHHHHhHHCCCCCCHHHHHHH
Q 012504 129 KVGLDSDKYIGNTLLRMYAACKEIDVAKAVFEEMPVRDVVSWSSMIAGFVACDSPSDALKVFHRMKLANESPNSVTLVSL 208 (462)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 208 (462)
..| ..+...+-.-+......|+...|..+...+...........+.... +...+...... ..++......+
T Consensus 148 ~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~~-----~~~~~~~~~~~ 218 (450)
T d1qsaa1 148 ASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART-----TGATDFTRQMA 218 (450)
T ss_dssp HTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH-----SCCCHHHHHHH
T ss_pred hcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHhc-----CCCChhhhHHH
Confidence 222 2233333445556667788888888888776555445555555443 23333332221 12333333333
Q ss_pred HHHHhc--ccchHhHHHHHHHHHHhCCCchHhHH---HHHHHHHHhcCChHHHHHHHhhccC--CChhhHHHHHHHHHHc
Q 012504 209 VSACTS--LINVRAGESIHSYAVVNGLELDVALG---TALVEMYSKCGHVEKAFKVFNLMRE--KNLQSWTIMISGLADN 281 (462)
Q Consensus 209 ~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 281 (462)
..+..+ ..+.+.+...+............... ..+.......+..+.+...+..... .+.....-.+......
T Consensus 219 ~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~ 298 (450)
T d1qsaa1 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGT 298 (450)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHc
Confidence 333333 35677777777777665422222111 2222333345666777766655442 2333333344555667
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 012504 282 GRGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVDMLGRAGLIEEAYHI 361 (462)
Q Consensus 282 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 361 (462)
+++..+...++.|... ..-.....--+.+++...|+.+.|..+|..+.. .++ -|..|. ..+.|..-.. .
T Consensus 299 ~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LA--a~~Lg~~~~~-~- 367 (450)
T d1qsaa1 299 GDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVA--AQRIGEEYEL-K- 367 (450)
T ss_dssp TCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHH--HHHTTCCCCC-C-
T ss_pred CChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHH--HHHcCCCCCC-C-
Confidence 8889888888877533 222334445567888889999999999998863 233 343332 1122221000 0
Q ss_pred HHhCCCCCC-H----HHHHHHHHHHHHcCChHHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCHHHHHHHHHHHh
Q 012504 362 IRNMPTEPN-A----VILRSFLGACRNHGQVLYLDDNLGKLLLKLEPELGANYVLAASVSSLSGNWDTAAELMVAIN 433 (462)
Q Consensus 362 ~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 433 (462)
.......+. . ... .-+..+...|.. ..|...+..+.+.. ++.-...++....+.|.++.|+.......
T Consensus 368 ~~~~~~~~~~~~~~~~~~-~ra~~L~~~g~~-~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 368 IDKAPQNVDSALTQGPEM-ARVRELMYWNLD-NTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCCCCSCCCCHHHHSHHH-HHHHHHHHTTCH-HHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred cCCCCccHHHhhhcChHH-HHHHHHHHcCCc-hHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 000111111 1 111 234567788999 99999888887543 34466778888889999999998877654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.39 E-value=0.48 Score=30.69 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 012504 283 RGNYAISLFAKMIQTGLKPDSISFSAILSACSHLGLVDEGKNYFDEMARVYNIKPTMEHYGCMVD 347 (462)
Q Consensus 283 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 347 (462)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++...+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4456677777777778889999999999999999999999999998876533 34556666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.77 E-value=1.9 Score=27.90 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=38.4
Q ss_pred hHHHHHHHHhHHCCCCCCHHHHHHHHHHHhcccchHhHHHHHHHHHHhCCCchHhHHHHHH
Q 012504 184 SDALKVFHRMKLANESPNSVTLVSLVSACTSLINVRAGESIHSYAVVNGLELDVALGTALV 244 (462)
Q Consensus 184 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 244 (462)
-++.+-++.+....+.|++......+.+|.+.+++..|.++++-+.... .++...|..++
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 3455556666666677777777777777777777777777777666442 22344554443
|