Citrus Sinensis ID: 012520

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
MEQALKRKLWRFCSRIQCLIRRRPRNKVIIRRFGKLNSKGLPNGDPSVKKSPVHLHGKLGCSNSKIPIRIATFNVAMFSLAPAISSTEELALYRNEKEGCLALKSPVEMKNQAKAASYCPKSILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLPDNEISLANSNVLMRSPVCLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADDKDFRNVLKATVDVPWAGEVNVDSTQLDHLNEKWRMKQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTKVSENAFRLLQRPKQKVIRMTNPCSTVGFFHL
cHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEHHHHHHHcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEEccccccccccccccccccccccccEEcccccccccccHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHcccEEEEccccccccEEEEEcccccEEEEEEcccccccccEEEEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHccccccEEEEcccccccccccccccEEEEEEcccccccEEEcEEEEcccccccccccEEEEEEEcccccHHccccccccEEEEcccccccEEEEc
cHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccccccccccccccEEEEEHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccHHHHHcccccEEEEEcccccccHHccccccccccccccHHcccccccccccHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHcccEEEEcccccHcccEEEccccHHHcccEEccccccccEEEEEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHccccccEEEEEcccccccccccccEEEEEEEcccccccEccccEEEEccccccccEEEEEEEEEEcccccHHcccccEEEEEEEcccccccEEEc
MEQALKRKLWRFCSRIQClirrrprnKVIIRRFGklnskglpngdpsvkkspvhlhgklgcsnskipirIATFNVAMFslapaisstEELALYRNEKegclalkspvemknqakaasycpksilkqsplhtsltspehlskqktvsrsklkvsinlpdneislansnvlmrspvclptsmmTWMEESAKCSRSIAEVLREVDADILSLQdvkaeeendmkPLSDLAAALGMKYVfaeswapeygnailskwpikrwkvqkiaddkDFRNVLKAtvdvpwagevnvdstqldhLNEKWRMKQICAIIqsndsphilagglnsldgsdysaERWMDIVKYYEdigkptprVEVMKLLKGIeyvdskefagecepVVIIAKgqnvqgtckygtrvdyilaspdspykfvpgsysvisskgtsdhhivKVDVTKVSENAFRLLqrpkqkvirmtnpcstvgffhl
meqalkrklwrfcsriqclirrrprnkviirrfgklnskglpngdpsvKKSPVHLHGKLGCSNSKIPIRIATFNVAMFSLAPAISSTEELALYRNEKEGCLALKSPVEMKNQAKAASYCPKSILKQSPLHtsltspehlskqktvsrsklkvsinlpdneislansnvlmRSPVCLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQdvkaeeendmKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADDKDFRNVLKAtvdvpwagevnvdSTQLDHLNEKWRMKQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKYyedigkptprVEVMKLLKGIEYVDSKEFAGECEPVVIIAkgqnvqgtCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTKVSENAFrllqrpkqkvirmtnpcstvgffhl
MEQALKRKLWRFCSRIQCLirrrprnkviirrFGKLNSKGLPNGDPSVKKSPVHLHGKLGCSNSKIPIRIATFNVAMFSLAPAISSTEELALYRNEKEGCLALKSPVEMKNQAKAASYCPKSILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLPDNEISLANSNVLMRSPVCLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADDKDFRNVLKATVDVPWAGEVNVDSTQLDHLNEKWRMKQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTKVSENAFRLLQRPKQKVIRMTNPCSTVGFFHL
******RKLWRFCSRIQCLIRRRPRNKVIIRRFGKL*****************HLHGKLGCSNSKIPIRIATFNVAMFSLAPAISSTEELALYRNEKEGCLAL*********************************************************ISLANSNVLMRSPVCLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQ*************SDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADDKDFRNVLKATVDVPWAGEVNVDSTQLDHLNEKWRMKQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTKVSENAFRLLQRPKQKVIRMTNPCSTVGFF**
*******KLWRFCSRIQCLIRRRPRNKVIIRRF*********************************PIRIATFNVAMFSLAPAI*********************************************************************INLPDNEISLA*****MRSPVCLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADDKDFRNVLKATVDVPWAGEVNVDSTQLDHLNEKWRMKQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVT****************************FFHL
MEQALKRKLWRFCSRIQCLIRRRPRNKVIIRRFGKLNSKGLPNGDPSVKKSPVHLHGKLGCSNSKIPIRIATFNVAMFSLAPAISSTEELALYRNEKEGCLALKSPVEMKNQAKAASYCPKSILKQSPLH******************KLKVSINLPDNEISLANSNVLMRSPVCLPTSMMTWMEESAKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADDKDFRNVLKATVDVPWAGEVNVDSTQLDHLNEKWRMKQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTKVSENAFRLLQRPKQKVIRMTNPCSTVGFFHL
MEQALKRKLWRFCSRIQCLIRRRPRNKVIIRRFGK*****************************KIPIRIATFNVAMFSLAPAI********************************************L*TSL**PEHLSKQKTVSRSKLKVSINLPDNEISL*N************************CSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADDKDFRNVLKATVDVPWAGEVNVDSTQLDHLNEKWRMKQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTKVSENAFRLLQRPKQKVIRMTNPCSTVGFFHL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEQALKRKLWRFCSRIQCLIRRRPRNKVIIRRFGKLNSKGLPNGDPSVKKSPVHLHGKLGCSNSKIPIRIATFNVAMFSLAPAISSTEELALYRNEKEGCLALKSPVEMKNQAKAASYCPKSILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLPDNEISLANSNVLMRSPVCLPTSMMTWMEESAKCSRSIAEVxxxxxxxxxxxxxxxxxxxxxMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADDKDFRNVLKATVDVPWAGEVNVDSTQLDHLNEKWRMKQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTKVSENAFRLLQRPKQKVIRMTNPCSTVGFFHL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
224102549493 predicted protein [Populus trichocarpa] 1.0 0.935 0.665 1e-180
225432458486 PREDICTED: uncharacterized protein LOC10 0.995 0.944 0.661 1e-174
255551567490 hydrolase, putative [Ricinus communis] g 0.991 0.932 0.634 1e-168
356549039494 PREDICTED: uncharacterized protein LOC10 0.969 0.904 0.618 1e-161
297736947408 unnamed protein product [Vitis vinifera] 0.872 0.985 0.677 1e-161
356557853490 PREDICTED: uncharacterized protein LOC10 0.969 0.912 0.620 1e-159
449495427472 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.956 0.934 0.590 1e-154
449432773472 PREDICTED: uncharacterized protein LOC10 0.956 0.934 0.590 1e-153
359479852511 PREDICTED: uncharacterized protein LOC10 0.932 0.841 0.599 1e-151
224131300449 predicted protein [Populus trichocarpa] 0.889 0.913 0.617 1e-145
>gi|224102549|ref|XP_002312721.1| predicted protein [Populus trichocarpa] gi|222852541|gb|EEE90088.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 327/491 (66%), Positives = 376/491 (76%), Gaps = 30/491 (6%)

Query: 1   MEQALKRKLWRFCSRIQCLIRRRPRNKVIIRRFGKLNSKGLPNGDPSVKKSPVHLHGKLG 60
           M   + RKL + C+RI+ LI RRPR KVII+RFGK++SK      P  +KS +HL+GK G
Sbjct: 1   MLGLIGRKLRQLCARIRLLIWRRPRPKVIIKRFGKISSKDRCKWRPGFRKSSIHLNGKHG 60

Query: 61  CSNSKIPIRIATFNVAMFSLAPAISSTEELALYRNEKEGCLALKSPVEMKNQAKAASYCP 120
            S+S  PIRIATFNVAMFSLAPA+   EE  +   E +G +A KSPVE      + SY P
Sbjct: 61  NSSSDRPIRIATFNVAMFSLAPAVPKAEESIMISQEHDGYMAYKSPVEFDAHVNSVSYYP 120

Query: 121 KSILKQSPLHTSLTSPEHLSKQKTVSRSKLKVSINLPDNEISLANS-------------- 166
           KSILKQSPLH SL + E    +K VSRSKLKVSINLPDNEISLANS              
Sbjct: 121 KSILKQSPLHDSLKNSEQFPAEKKVSRSKLKVSINLPDNEISLANSKLLGFVDDEKGGSS 180

Query: 167 ----------NVLMRSPVCLPTSMMTWM-EESAKCSRSIAEVLREVDADILSLQDVKAEE 215
                     NV+MRSPVCLP +M  ++ EE  K SRSI EVL+EVD+DIL+LQDVKA+E
Sbjct: 181 NIVASRNYRSNVVMRSPVCLPANMTQFISEEGWKSSRSIMEVLKEVDSDILALQDVKADE 240

Query: 216 ENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIADDKDFRNVLKATV 275
           E  M PLSDLAA+LGMKYVFAESWAP YGNAILSKWPIKRWKVQKIA+D+DFRNVLKAT+
Sbjct: 241 EKGMSPLSDLAASLGMKYVFAESWAPGYGNAILSKWPIKRWKVQKIANDEDFRNVLKATI 300

Query: 276 DVPWAGEVNVDSTQLDHLNEKWRMKQICAIIQSND-SPHILAGGLNSLDGSDYSAERWMD 334
            VPWAGEV+   TQLDHL+E WRMKQI A+I+SND +PHILAGG+NSLDGSDYS+ERWMD
Sbjct: 301 YVPWAGEVDFYCTQLDHLDENWRMKQIGAMIKSNDMTPHILAGGINSLDGSDYSSERWMD 360

Query: 335 IVKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDY 394
           IVKYYEDIGKPTPR+EV K LKG  YVD+KE+AGECEPVVI+AKGQNVQGTCKYGTRVDY
Sbjct: 361 IVKYYEDIGKPTPRIEVTKFLKGKGYVDAKEYAGECEPVVIVAKGQNVQGTCKYGTRVDY 420

Query: 395 ILASPDSPYKFVPGSYSVISSKGTSDHHIVKVDVTKVSEN----AFRLLQRPKQKVIRMT 450
           +LASP SPYKFVPGSYSVISSKGTSDHHIVK D+ KV E     A    Q+ KQKV+R++
Sbjct: 421 MLASPYSPYKFVPGSYSVISSKGTSDHHIVKADIIKVGEGYQGTAIGEPQQAKQKVVRIS 480

Query: 451 NPCSTVGFFHL 461
           NP  + G + L
Sbjct: 481 NPWCSRGVWKL 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432458|ref|XP_002277228.1| PREDICTED: uncharacterized protein LOC100259606 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255551567|ref|XP_002516829.1| hydrolase, putative [Ricinus communis] gi|223543917|gb|EEF45443.1| hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356549039|ref|XP_003542906.1| PREDICTED: uncharacterized protein LOC100818965 [Glycine max] Back     alignment and taxonomy information
>gi|297736947|emb|CBI26148.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356557853|ref|XP_003547225.1| PREDICTED: uncharacterized protein LOC100776616 [Glycine max] Back     alignment and taxonomy information
>gi|449495427|ref|XP_004159838.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101215085 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432773|ref|XP_004134173.1| PREDICTED: uncharacterized protein LOC101215085 [Cucumis sativus] Back     alignment and taxonomy information
>gi|359479852|ref|XP_002271044.2| PREDICTED: uncharacterized protein LOC100247717 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131300|ref|XP_002321050.1| predicted protein [Populus trichocarpa] gi|222861823|gb|EEE99365.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query461
TAIR|locus:2089930458 AT3G21530 "AT3G21530" [Arabido 0.917 0.923 0.578 4e-122
TAIR|locus:2066347438 AT2G48030 [Arabidopsis thalian 0.700 0.737 0.633 2.9e-103
TAIR|locus:2089930 AT3G21530 "AT3G21530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
 Identities = 264/456 (57%), Positives = 318/456 (69%)

Query:     6 KRKLWRFCSRIQCLXXXXXXXXXXXXXFGKLNSKGLPNGDPSVKKSPVHLHGKLGCSNSK 65
             +RKL    SR++ +             F K   +      P  + S +HL      SNS 
Sbjct:     6 RRKLGCLFSRLRWVIKKRVRARVIVRRFRKARWRARRKESPESEVSSIHLS-----SNSG 60

Query:    66 IPIRIATFNVAMFSLAPAISSTEELALYRNEKEGCLALKSPVEMKNQAKAASYCPKSILK 125
               IR+ATFNVAMFSLAP + + EE A   +     +   SP              K ILK
Sbjct:    61 RHIRVATFNVAMFSLAPVVQTMEETAFLGHLDSSNITCPSP--------------KGILK 106

Query:   126 QSPLHTS-LTSPE---HLSKQK-TVSRSKLKVSINLPDNEISLANSNVLMRSPVCLPTSM 180
             QSPLH+S +  P+   +L   + ++++S   +S+   DN+      ++ MRSPVCLP+  
Sbjct:   107 QSPLHSSAVRKPKVCINLPDNEISLAQSYSFLSMVENDNDGKENRGSLSMRSPVCLPSCW 166

Query:   181 MTWMEESAK---CSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAE 237
               W +ES       RSIAE+LRE+DADIL+LQDVKAEEE  MKPLSDLA+ALGMKYVFAE
Sbjct:   167 --WDQESFNGYSSRRSIAELLRELDADILALQDVKAEEETLMKPLSDLASALGMKYVFAE 224

Query:   238 SWAPEYGNAILSKWPIKRWKVQKIADDKDFRNVLKATVDVPWAGEVNVDSTQLDHLNEKW 297
             SWAPEYGNAILSKWPIK+W+VQ+IAD  DFRNVLK TV++PWAG+VNV  TQLDHL+E W
Sbjct:   225 SWAPEYGNAILSKWPIKKWRVQRIADVDDFRNVLKVTVEIPWAGDVNVYCTQLDHLDENW 284

Query:   298 RMKQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPTPRVEVMKLLKG 357
             RMKQI AI + ++SPHIL GGLNSLDGSDYS  RW  IVKYYED GKPTPRVEVM+ LKG
Sbjct:   285 RMKQIDAITRGDESPHILLGGLNSLDGSDYSIARWNHIVKYYEDSGKPTPRVEVMRFLKG 344

Query:   358 IEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKG 417
               Y+DSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASP+SPY+FVPGSYSV+SSKG
Sbjct:   345 KGYLDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPESPYEFVPGSYSVVSSKG 404

Query:   418 TSDHHIVKVD--VTKV-SENAFR-LLQRPKQKVIRM 449
             TSDHHIVKVD  +TK  S   F+   ++ KQK+ ++
Sbjct:   405 TSDHHIVKVDLVITKERSRGNFKHSRKKAKQKIFQI 440
GO:0008150 "biological_process" evidence=ND
GO:0016787 "hydrolase activity" evidence=ISS
TAIR|locus:2066347 AT2G48030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.21.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
COG3568259 COG3568, ElsH, Metal-dependent hydrolase [General 6e-13
cd09080248 cd09080, TDP2, Phosphodiesterase domain of human T 2e-08
cd09079259 cd09079, RgfB-like, Streptococcus agalactiae RgfB, 2e-06
cd09084246 cd09084, EEP-2, Exonuclease-Endonuclease-Phosphata 4e-06
cd09083252 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphata 5e-06
cd10281253 cd10281, Nape_like_AP-endo, Neisseria meningitides 0.001
>gnl|CDD|226098 COG3568, ElsH, Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information 
 Score = 68.2 bits (167), Expect = 6e-13
 Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 17/149 (11%)

Query: 194 IAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVF--AESWA------PEY-- 243
           IAEV+REV ADI++LQ+V          L DL   LG   +     S A       E   
Sbjct: 33  IAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYGEGQH 92

Query: 244 GNAILSKWPIKRWKVQKIADDKDF--RNVLKATVDVPWAGEVNVDSTQLDHLNEKWRMKQ 301
           GNAILS+ PI+  +   + D      R  L A +++P    + V +  L  L+E+ R++Q
Sbjct: 93  GNAILSRLPIRDVENLALPDPTGLEPRGALLAEIELPGGKPLRVINAHLG-LSEESRLRQ 151

Query: 302 ICAIIQS----NDSPHILAGGLNSLDGSD 326
             A++        +P +L G  N+  GS 
Sbjct: 152 AAALLALAGLPALNPTVLMGDFNNEPGSA 180

Length = 259
>gnl|CDD|197314 cd09080, TDP2, Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related domains Back     alignment and domain information
>gnl|CDD|197313 cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins Back     alignment and domain information
>gnl|CDD|197318 cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2 Back     alignment and domain information
>gnl|CDD|197317 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1 Back     alignment and domain information
>gnl|CDD|197336 cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 461
PRK11756268 exonuclease III; Provisional 99.96
COG3568259 ElsH Metal-dependent hydrolase [General function p 99.94
COG0708261 XthA Exonuclease III [DNA replication, recombinati 99.94
PRK05421263 hypothetical protein; Provisional 99.92
TIGR00633255 xth exodeoxyribonuclease III (xth). This family is 99.91
TIGR00195254 exoDNase_III exodeoxyribonuclease III. The model b 99.9
PRK13911250 exodeoxyribonuclease III; Provisional 99.9
TIGR03395283 sphingomy sphingomyelin phosphodiesterase. Members 99.89
PLN03144606 Carbon catabolite repressor protein 4 homolog; Pro 99.89
PTZ00297 1452 pantothenate kinase; Provisional 99.84
COG3021309 Uncharacterized protein conserved in bacteria [Fun 99.78
PRK15251271 cytolethal distending toxin subunit CdtB; Provisio 99.77
KOG2756349 consensus Predicted Mg2+-dependent phosphodiestera 99.74
KOG3873422 consensus Sphingomyelinase family protein [Signal 99.73
PF03372249 Exo_endo_phos: Endonuclease/Exonuclease/phosphatas 99.63
KOG2338495 consensus Transcriptional effector CCR4-related pr 99.61
smart00476276 DNaseIc deoxyribonuclease I. Deoxyribonuclease I c 99.41
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 99.32
smart00128310 IPPc Inositol polyphosphate phosphatase, catalytic 99.3
KOG0620361 consensus Glucose-repressible alcohol dehydrogenas 99.07
COG2374798 Predicted extracellular nuclease [General function 98.85
PF14529119 Exo_endo_phos_2: Endonuclease-reverse transcriptas 98.7
KOG0566 1080 consensus Inositol-1,4,5-triphosphate 5-phosphatas 98.36
KOG1294335 consensus Apurinic/apyrimidinic endonuclease and r 98.21
PLN03191621 Type I inositol-1,4,5-trisphosphate 5-phosphatase 98.17
COG5411 460 Phosphatidylinositol 5-phosphate phosphatase [Sign 97.74
PTZ00312356 inositol-1,4,5-triphosphate 5-phosphatase; Provisi 92.15
KOG1976391 consensus Inositol polyphosphate 5-phosphatase, ty 81.46
>PRK11756 exonuclease III; Provisional Back     alignment and domain information 
Probab=99.96  E-value=4.5e-28  Score=238.80  Aligned_cols=232  Identities=17%  Similarity=0.142  Sum_probs=152.6

Q ss_pred             HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecCCCCeeEEEEEeccceeeEEEeccC--CC
Q 012520          188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQKIAD--DK  265 (461)
Q Consensus       188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~~~~~GvAIlSR~Pi~~~~~~~l~~--~~  265 (461)
                      ..+.++++++|++.+|||||||||+......  .+ .+....||.+.|. ...+.+|+|||||+|+...... ++.  ..
T Consensus        12 ~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~--~~-~~~~~~gy~~~~~-~~~~~~GvailSr~p~~~~~~~-~~~~~~~   86 (268)
T PRK11756         12 RARPHQLEAIIEKHQPDVIGLQETKVHDEMF--PL-EEVEALGYHVFYH-GQKGHYGVALLSKQTPIAVRKG-FPTDDEE   86 (268)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEecccccccC--CH-HHHHhcCCEEEEe-CCCCCCEEEEEECCChHHeEEC-CCCcccc
Confidence            4567889999999999999999997542211  12 2334578877665 3457899999999998755432 322  23


Q ss_pred             CCceEEEEEEEcCCCcEEEEEEecCCCCC---H----HHHHHHHHHHH---h---cCCCCEEEEecCCCCCCCCChhh-H
Q 012520          266 DFRNVLKATVDVPWAGEVNVDSTQLDHLN---E----KWRMKQICAII---Q---SNDSPHILAGGLNSLDGSDYSAE-R  331 (461)
Q Consensus       266 ~~R~~i~a~i~l~gg~~v~v~ntHL~~~~---~----~~R~~Ql~~Ll---~---~~~~PvIL~GDFNs~~~s~~~~~-~  331 (461)
                      +.+.++.+++..+++ .+.|+|+|++...   .    ..|.+++..|.   +   ..+.|+|||||||..+.+.+... .
T Consensus        87 ~~~r~l~~~i~~~~g-~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~~~~D~~~~~  165 (268)
T PRK11756         87 AQRRIIMATIPTPNG-NLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGE  165 (268)
T ss_pred             ccCCEEEEEEEcCCC-CEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHHhccCCCEEEEeecccCCChhhcCCcc
Confidence            457799999998774 5999999996531   1    13445555443   2   23679999999999887542110 0


Q ss_pred             HHHHHHhh--hhcCCCChhHHHHHHHhcCCceeeecccCCC---CceEeecCCccccCCCCCCCceEEEEECCCCCCcee
Q 012520          332 WMDIVKYY--EDIGKPTPRVEVMKLLKGIEYVDSKEFAGEC---EPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFV  406 (461)
Q Consensus       332 ~~~i~~~~--~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~---~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~  406 (461)
                      +. ....+  ...+-..++++.++.|.+.||+|+|+..++.   .+|+|.+.+..  ...+.++||||||+++.+.  -.
T Consensus       166 ~~-~~~~~~~~~~~~~~~er~~~~~l~~~~l~D~~R~~~p~~~~~~T~~~~~~~~--~~~~~g~RIDyi~~s~~~~--~~  240 (268)
T PRK11756        166 EN-RKRWLRTGKCSFLPEEREWLDRLMDWGLVDTFRQLNPDVNDRFSWFDYRSKG--FDDNRGLRIDLILATQPLA--ER  240 (268)
T ss_pred             cC-hHHhcccCCccCCHHHHHHHHHHHhCCcEeehhhhCCCCCCcccCcCCcccc--cccCCceEEEEEEeCHHHH--hh
Confidence            00 00000  0111223346677777778999999988764   24656554421  1124689999999999854  23


Q ss_pred             eeEEEEcCC----CCCCCccceEEEEEe
Q 012520          407 PGSYSVISS----KGTSDHHIVKVDVTK  430 (461)
Q Consensus       407 v~s~~vi~~----~~~SDH~PV~ad~~l  430 (461)
                      +.++.+...    .++|||+||+++|.+
T Consensus       241 v~~~~i~~~~~~~~~~SDH~PV~~~~~~  268 (268)
T PRK11756        241 CVETGIDYDIRGMEKPSDHAPIWATFKL  268 (268)
T ss_pred             heEeEEeHHHhCCCCCCCcccEEEEEeC
Confidence            667776532    247999999999974

>COG3568 ElsH Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05421 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00633 xth exodeoxyribonuclease III (xth) Back     alignment and domain information
>TIGR00195 exoDNase_III exodeoxyribonuclease III Back     alignment and domain information
>PRK13911 exodeoxyribonuclease III; Provisional Back     alignment and domain information
>TIGR03395 sphingomy sphingomyelin phosphodiesterase Back     alignment and domain information
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional Back     alignment and domain information
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms] Back     alignment and domain information
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms] Back     alignment and domain information
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] Back     alignment and domain information
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription] Back     alignment and domain information
>smart00476 DNaseIc deoxyribonuclease I Back     alignment and domain information
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues Back     alignment and domain information
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription] Back     alignment and domain information
>COG2374 Predicted extracellular nuclease [General function prediction only] Back     alignment and domain information
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B Back     alignment and domain information
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair] Back     alignment and domain information
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional Back     alignment and domain information
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional Back     alignment and domain information
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query461
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 3e-29
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 2e-11
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 3e-11
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 4e-11
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 3e-10
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 1e-07
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Length = 266 Back     alignment and structure
 Score =  114 bits (287), Expect = 3e-29
 Identities = 43/267 (16%), Positives = 86/267 (32%), Gaps = 58/267 (21%)

Query: 194 IAEVLREVDADILSLQDV-----------KAEEENDMKPLSD-LAAALGMKYVFAESWAP 241
           +A  + E   D++++Q+V              EEN    L + L       Y    S + 
Sbjct: 26  LARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSNSH 85

Query: 242 ------EYGNAILSKWPIKRWKVQKIADDKDF-----RNVLKATVDVPWAGEVNVDSTQL 290
                   G A++++  IK          +       R ++  T++     ++   S  +
Sbjct: 86  IGFGKYNEGVAVITRHKIKAEDEFYCTFAQSVRTISARRIVSITINYEG-QDIEFYSCHM 144

Query: 291 DHLN--EKWRMKQICAIIQ--SNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPT 346
           +  N   +   K I  I+    N +  IL G  N+                         
Sbjct: 145 NLPNCETEDMGKNIQTILNRTQNSNLKILMGDFNT----------------------DAI 182

Query: 347 PRVEVMKLLKGIEYVDSKEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFV 406
             V   + +      D+   A + +  + + K  +     K   R+DYI ++ +      
Sbjct: 183 GNVAAYENILSQGLFDTYVMAEKKDDGITVDKSIHGWDNDKAKKRLDYIFSNKE----LK 238

Query: 407 PGSYSVI----SSKGTSDHHIVKVDVT 429
                VI    + +  SDH  ++V + 
Sbjct: 239 VKESKVIFNNKNKEIVSDHFGIEVKIE 265
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Length = 301 Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Length = 267 Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Length = 306 Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Length = 257 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Length = 317 Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Length = 298 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.95
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 99.95
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 99.95
4fva_A256 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.95
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 99.94
4gz1_A256 Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl 99.94
4f1h_A250 Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com 99.94
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 99.93
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 99.93
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 99.93
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 99.92
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 99.91
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 99.91
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 99.91
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 99.91
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 99.9
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 99.9
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 99.9
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 99.89
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 99.88
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 99.88
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 99.85
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 99.82
2f1n_A262 CDT B, cytolethal distending toxin subunit B; E.co 99.79
2ei9_A240 Non-LTR retrotransposon R1BMKS ORF2 protein; four 99.79
2a40_B260 Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse 99.75
1sr4_B261 CDT B, cytolethal distending toxin protein B; bact 99.75
2imq_X282 Salivary nitrophorin; ferrous heme, beta-sandwich, 99.65
1i9z_A347 Synaptojanin, phosphatidylinositol phosphate phosp 99.59
2xsw_A357 72 kDa inositol polyphosphate 5-phosphatase; inosi 99.56
4a9c_A316 Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; 99.19
3mtc_A313 Type II inositol-1,4,5-trisphosphate 5-phosphatas; 99.15
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
Probab=99.95  E-value=1.3e-27  Score=243.96  Aligned_cols=204  Identities=19%  Similarity=0.122  Sum_probs=146.2

Q ss_pred             HhhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEecCCCCeeEEEEEeccceeeEEEe--ccCCC
Q 012520          188 AKCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILSKWPIKRWKVQK--IADDK  265 (461)
Q Consensus       188 ~~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~~~~~~GvAIlSR~Pi~~~~~~~--l~~~~  265 (461)
                      ..+...|+++|++++|||||||||...      ++..|....++++.|.....+.+|++||+|.|+.......  .+...
T Consensus       136 ~~R~~~I~~~I~~~~PDIV~LQEv~~~------~~~~l~~~~~~y~~~~~~~~~~~G~aIlsk~~i~~~~~~~~~~~~~~  209 (362)
T 4gew_A          136 LTRMKAVAHIVKNVNPDILFLQEVVDR------DLAPIDKLQSLYKIYYSNKGCQYYTAILVSKMFDVEKHDVIHFQNSG  209 (362)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEEEECST------TCHHHHGGGGTEEEEESSTTSSSEEEEEEETTEEEEEEEEEECTTCS
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEcCChh------HhHHHHHhcCCceEEeCCCCCCceEEEEEeccCccccccccCCCCCc
Confidence            467889999999999999999999644      2344554444444455455678999999998876554433  34445


Q ss_pred             CCceEEEEEEEcCCCcEEEEEEecCCCC--CHHHHHHHHHHHHh--------cCCCCEEEEecCCCCCCCCChhhHHHHH
Q 012520          266 DFRNVLKATVDVPWAGEVNVDSTQLDHL--NEKWRMKQICAIIQ--------SNDSPHILAGGLNSLDGSDYSAERWMDI  335 (461)
Q Consensus       266 ~~R~~i~a~i~l~gg~~v~v~ntHL~~~--~~~~R~~Ql~~Ll~--------~~~~PvIL~GDFNs~~~s~~~~~~~~~i  335 (461)
                      ..|.++.+.+.++| ..|.|+|+||.+.  ....|..|+..++.        ..+.|+|||||||..+.+..        
T Consensus       210 ~~r~~l~~~i~~~g-~~l~v~ntHL~s~~~~~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~--------  280 (362)
T 4gew_A          210 MYRTLQILEGSIGG-LKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVS--------  280 (362)
T ss_dssp             SCCEEEEEEEEETT-EEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCC--------
T ss_pred             ccceEEEEEEEECC-EEEEEEEecCCccccchhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccc--------
Confidence            67888999999877 8999999999875  34567788776643        24689999999998776531        


Q ss_pred             HHhhhhcCCCChhHHHHHHHhcCCceeeecccCCCC---ceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEEEE
Q 012520          336 VKYYEDIGKPTPRVEVMKLLKGIEYVDSKEFAGECE---PVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSV  412 (461)
Q Consensus       336 ~~~~~~~~~~~p~~~v~~~L~~~gl~Da~~~~~~~~---~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~v  412 (461)
                                         ....||.|+|+..+...   +|+|...+........++.||||||+++.    +.+.++++
T Consensus       281 -------------------~~~~gl~Da~~~~~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~----l~~~~~~v  337 (362)
T 4gew_A          281 -------------------RVPDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGP----LDKVKFTL  337 (362)
T ss_dssp             -------------------CCCTTCEEHHHHTTCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEESS----CCEEEEEE
T ss_pred             -------------------hhcchHHHHHHHhCCCCCCCcCcccccCcccccCCCCCcceEEEEEcCC----cceeEEEE
Confidence                               02358999998776432   34444554433333445689999999998    56667766


Q ss_pred             cCC-------CCCCCccceEEEEE
Q 012520          413 ISS-------KGTSDHHIVKVDVT  429 (461)
Q Consensus       413 i~~-------~~~SDH~PV~ad~~  429 (461)
                      +..       .++|||+||+++|.
T Consensus       338 i~~~ri~~~~~~pSDH~pV~A~FS  361 (362)
T 4gew_A          338 EGRQRIRSCLCFPSDHWAINATFF  361 (362)
T ss_dssp             ECCSCCTTTSSCSCSSCEEEEEEE
T ss_pred             EeeeecCCCCCCCCcccCEEEEEc
Confidence            531       24799999999996
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Back     alignment and structure
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* Back     alignment and structure
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Back     alignment and structure
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Back     alignment and structure
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Back     alignment and structure
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Back     alignment and structure
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Back     alignment and structure
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Back     alignment and structure
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Back     alignment and structure
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Back     alignment and structure
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Back     alignment and structure
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 461
d1akoa_268 d.151.1.1 (A:) DNA-repair enzyme exonuclease III { 5e-11
d1hd7a_275 d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human 7e-11
d2f1na1250 d.151.1.1 (A:1-250) Cytolethal distending toxin su 1e-08
d1vyba_236 d.151.1.1 (A:) Endonuclease domain of LINE-1 rever 1e-08
d1sr4b_261 d.151.1.1 (B:) Cytolethal distending toxin subunit 5e-08
d1wdua_228 d.151.1.1 (A:) Endonuclease domain of TRAS1 retrot 2e-05
d1zwxa1293 d.151.1.3 (A:41-333) Sphingomyelin phosphodiestera 2e-05
d2a40b1260 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos 5e-05
d2ddra1299 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesteras 1e-04
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Length = 268 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA-repair enzyme exonuclease III
species: Escherichia coli [TaxId: 562]

 Score = 60.9 bits (146), Expect = 5e-11
 Identities = 34/255 (13%), Positives = 71/255 (27%), Gaps = 20/255 (7%)

Query: 190 CSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAESWAPEYGNAILS 249
               +  ++ +   D++ LQ+ K  ++       +  A LG    +           +  
Sbjct: 14  RPHQLEAIVEKHQPDVIGLQETKVHDDMFPL---EEVAKLGYNVFYHGQKGHYGVALLTK 70

Query: 250 KWPIKRWKVQKIADDKDFRNVLKATVDVPWAGEVNVDSTQLDHLNEKWR----------- 298
           + PI   +     D++  R ++ A +         ++       +               
Sbjct: 71  ETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQ 130

Query: 299 --MKQICAIIQSNDSPHILAGGLNSLDGSD-YSAERWMDIVKYYEDIGKPTPRVEVMKLL 355
                +   ++ ++   I+     S    D    E                   E M  L
Sbjct: 131 NLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRL 190

Query: 356 KGIEYVDS-KEFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGS--YSV 412
                VD+ +    +          ++       G R+D +LAS       V     Y +
Sbjct: 191 MSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEI 250

Query: 413 ISSKGTSDHHIVKVD 427
            S +  SDH  V   
Sbjct: 251 RSMEKPSDHAPVWAT 265
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Length = 275 Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Length = 250 Back     information, alignment and structure
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Length = 261 Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Length = 228 Back     information, alignment and structure
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Length = 293 Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Length = 260 Back     information, alignment and structure
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Length = 299 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query461
d1vyba_236 Endonuclease domain of LINE-1 reverse transcriptas 99.88
d1zwxa1293 Sphingomyelin phosphodiesterase C {Listeria ivanov 99.83
d2ddra1299 Sphingomyelin phosphodiesterase C {Bacillus cereus 99.82
d1wdua_228 Endonuclease domain of TRAS1 retrotransposon (ORF2 99.82
d1hd7a_275 DNA repair endonuclease Hap1 {Human (Homo sapiens) 99.81
d2f1na1250 Cytolethal distending toxin subunit B {Escherichia 99.76
d1sr4b_261 Cytolethal distending toxin subunit B {Haemophilus 99.73
d1akoa_268 DNA-repair enzyme exonuclease III {Escherichia col 99.72
d2imqx1280 Salivary nitrophorin {Bedbug (Cimex lectularius) [ 99.72
d2a40b1260 Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913 99.68
d1i9za_345 Synaptojanin, IPP5C domain {Fission yeast (Schizos 99.45
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Endonuclease domain of LINE-1 reverse transcriptase homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.9e-22  Score=187.80  Aligned_cols=213  Identities=14%  Similarity=0.104  Sum_probs=132.9

Q ss_pred             hhHHHHHHHHHccCCcEEEEcCccCCccCCcchHHHHHHHhCCcEEEEec-CCCCeeEEEEEeccceeeEEEeccCCCCC
Q 012520          189 KCSRSIAEVLREVDADILSLQDVKAEEENDMKPLSDLAAALGMKYVFAES-WAPEYGNAILSKWPIKRWKVQKIADDKDF  267 (461)
Q Consensus       189 ~~~~~i~~~I~~~~pDVV~LQEv~~~~~~~~~~l~~L~~~~g~~~~f~~~-~~~~~GvAIlSR~Pi~~~~~~~l~~~~~~  267 (461)
                      .+...|.++|++.+||||||||+......   ... + ...++.+.|... .....|++|++++|+.......... .. 
T Consensus        20 ~~~~~i~~~i~~~~~DIi~LQE~~~~~~~---~~~-~-~~~~~~~~~~~~~~~~~~g~~i~~k~~~~~~~~~~~~~-~~-   92 (236)
T d1vyba_          20 IKRHRLASWIKSQDPSVCCIQETHLTCRD---THR-L-KIKGWRKIYQANGKQKKAGVAILVSDKTDFKPTKIKRD-KE-   92 (236)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCCCCTTS---GGG-C-CCTTCCEEEEECCSSSSCCEEEEECTTCCCEEEEEEEC-TT-
T ss_pred             hhHHHHHHHHHHCCCeEEEEEcccCcccc---chh-h-hhcccceEEEeeccccccceeeEeeccccccccccccc-cc-
Confidence            46678999999999999999999654221   111 1 122444544433 3456799999999987544332222 22 


Q ss_pred             ceEEEEEEEcCCCcEEEEEEecCCCCCHHHHH-HHHHHHHhcCCCCEEEEecCCCCCCCCChhhHHHHHHHhhhhcCCCC
Q 012520          268 RNVLKATVDVPWAGEVNVDSTQLDHLNEKWRM-KQICAIIQSNDSPHILAGGLNSLDGSDYSAERWMDIVKYYEDIGKPT  346 (461)
Q Consensus       268 R~~i~a~i~l~gg~~v~v~ntHL~~~~~~~R~-~Ql~~Ll~~~~~PvIL~GDFNs~~~s~~~~~~~~~i~~~~~~~~~~~  346 (461)
                      .....+.+...+ ..+.++++|+.+....... ..+..+....+.|+||+||||......+.          ........
T Consensus        93 ~~~~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~Il~GDfN~~~~~~d~----------~~~~~~~~  161 (236)
T d1vyba_          93 GHYIMVKGSIQQ-EELTILNIYAPNTGAPRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDR----------STRQKVNK  161 (236)
T ss_dssp             SSEEEEEEEETT-EEEEEEEEECCSSSHHHHHHHHHHHTTTTCCTTEEEEEECSSCSSGGGB----------TTCCCCCH
T ss_pred             ccceeeeeeecc-CcceeEEecccccccHHHHHhhhhhhcccccceeEEeeccccccchhhh----------cccccchh
Confidence            225666777666 8899999999864433222 33333444568899999999976442100          00000111


Q ss_pred             hhHHHHHHHhcCCceeeecccCCC--CceEeecCCccccCCCCCCCceEEEEECCCCCCceeeeEEEEcCCCCCCCccce
Q 012520          347 PRVEVMKLLKGIEYVDSKEFAGEC--EPVVIIAKGQNVQGTCKYGTRVDYILASPDSPYKFVPGSYSVISSKGTSDHHIV  424 (461)
Q Consensus       347 p~~~v~~~L~~~gl~Da~~~~~~~--~~tt~~~~g~~~~~t~~~~~RIDyIf~S~~~~~~~~v~s~~vi~~~~~SDH~PV  424 (461)
                      ......+.+...|+.|+|+..++.  ..++|...+       ....||||||+|+.+..  .+..+++++. ..|||+||
T Consensus       162 ~~~~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~-------~~~~RiD~il~s~~~~~--~~~~~~i~~~-~~SDH~pv  231 (236)
T d1vyba_         162 DTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPH-------HTYSKIDHIVGSKALLS--KCKRTEIITN-YLSDHSAI  231 (236)
T ss_dssp             HHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTT-------TEEECCEEEEEEGGGGG--GEEEEEEECC-SSSSSCEE
T ss_pred             hHHHHHHHHHhhhcccccceeccCCccccccCCCC-------CCCceeEEEEEChHHHh--hceEEEECCC-CCCCcccE
Confidence            123455566788999998765432  234443221       12468999999998542  3457777775 78999999


Q ss_pred             EEEEE
Q 012520          425 KVDVT  429 (461)
Q Consensus       425 ~ad~~  429 (461)
                      +++|.
T Consensus       232 ~~~lk  236 (236)
T d1vyba_         232 KLELR  236 (236)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99973
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Back     information, alignment and structure
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Back     information, alignment and structure
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure