Citrus Sinensis ID: 012561

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-
Protein Sequence
MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKDIDVCEYIS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHccccccccccHHHHHHHcHHHccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcc
Coil and Loop (DISEMBL)
masnnqnkppvlsnnitkaspssnkkklgvdevtcdkeqkfGAEKMVGTANNARIRQAFSVVNGiqdlglssnpasnagsecgtieFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKhkelavssEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFrrglkdidvceyis
Flexible Loop (DISEMBL)
masnnqnkppvlsnnitkaspssnkkklgvdEVTCDKEQKFGAEKMVGTANNARIRQAFSVVNGIQDLGLSSNPasnagsecgtieFTREDVEALLSEkmryknkfnykeRCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLevsdlsaletktefegqKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILElevnlsssalfrrglkdidvceyis
Low Complexity Region (SEG)
MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKDIDVCEYIS
Disordered region (IsUnstruct)
**********************************************VGTANNARIRQAFSVVNGIQDLG************CGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSF**********************************************************INDMYKLLQEYNSSLQHY******************************TLRGQYIS***************************************************************************************************************LINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKDIDVCEYI*
Disordered Region (DISOPRED)
************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************TILELEVNLSSSALFRRGLKD********
Disordered Region (DISEMBL)
**********VLSNNITK************DEVTCDKEQKFGAEKMVGTANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKDIDVCEYIS
Disordered Region (DISPRO)
****************************************FGAEKM**************************************IEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKDIDVCEYIS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTxxxxxxxxxxxxxxxxxxxxxFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLAALDSLAREKETRLNMERSxxxxxxxxxxxxxxxxxxxxxxxxxxxxYKLLQEYNSSLQHYxxxxxxxxxxxxxxxxxxxxxKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVExxxxxxxxxxxxxxxxxxxxxVIKHKELAVSxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEVSDLSALETKTExxxxxxxxxxxxxxxxxxxxxxxxxxxxRKRLHNTILELEVNLSSSALFRRGLKDIDVCEYIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	461	2.2.26 [Sep-21-2011]
P46875	754	Kinesin-3 OS=Arabidopsis	yes	no	0.859	0.525	0.624	1e-143
P46864	745	Kinesin-2 OS=Arabidopsis	no	no	0.839	0.519	0.569	1e-127
Q07970	793	Kinesin-1 OS=Arabidopsis	no	no	0.939	0.546	0.461	6e-96
F4JGP4	790	Kinesin-5 OS=Arabidopsis	no	no	0.932	0.544	0.431	2e-90

>sp|P46875|ATK3_ARATH Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1

 Score =  509 bits (1310), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/397 (62%), Positives = 324/397 (81%), Gaps = 1/397 (0%)

Query: 46  MVGT-ANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKN 104
           MVG  ANN RIR AF V NG +DL  +S PAS  GSE G +EFTREDVE LL+E+++YK+
Sbjct: 1   MVGAMANNGRIRSAFPVTNGSKDLTPNSAPASTTGSEYGPVEFTREDVETLLNERIKYKS 60

Query: 105 KFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNK 164
           KFNYKERCENMMDYIKRLRLCI+WFQELE DYAFE E+L+NALEL+E+ C +ME++L+NK
Sbjct: 61  KFNYKERCENMMDYIKRLRLCIRWFQELELDYAFEQEKLKNALELNEKHCVDMEVSLKNK 120

Query: 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKA 224
           EEELN+II ELRK+F S+Q +LA+E+++KLAA DSL +EKE RL++E++ A L+E+LGKA
Sbjct: 121 EEELNMIIEELRKNFESVQVQLAREQTEKLAANDSLGKEKEARLSVEKAQAGLTEELGKA 180

Query: 225 QEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENL 284
           Q +LQ+ANQRI S+NDMYKLLQEYNSSLQ YN+KLQ D+D AHE+IKRGEKE++AI+EN+
Sbjct: 181 QGDLQTANQRIQSVNDMYKLLQEYNSSLQLYNSKLQGDLDEAHETIKRGEKERTAIIENI 240

Query: 285 STLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344
             L+GQ+ +LQEQL+  KASQ++ M+QK  LV+E+AS++VELQQV+DDRD  L +V+ L 
Sbjct: 241 GNLKGQFSALQEQLAASKASQEDIMKQKGELVNEIASLKVELQQVKDDRDRHLVEVKTLQ 300

Query: 345 AEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK 404
            E  K+ +   +  +LE  C+SQS QIR L D+L  +E +L+VSDLS  E   E+E QK+
Sbjct: 301 TEATKYNDFKDAITELETTCSSQSTQIRQLQDRLVNSERRLQVSDLSTFEKMNEYEDQKQ 360

Query: 405 LINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL 441
            I +L++ +E+AE KL+EGEKLRK+LHNTILEL+ N+
Sbjct: 361 SIIDLKSRVEEAELKLVEGEKLRKKLHNTILELKGNI 397

Possible role in mitosis.
Arabidopsis thaliana (taxid: 3702)

>sp|P46864|ATK2_ARATH Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1

 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/397 (56%), Positives = 309/397 (77%), Gaps = 10/397 (2%)

Query: 46  MVG-TANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKN 104
           MVG   NN RIR +F V +      L+SN  S  G   G +EFTREDVE LL E+++YK+
Sbjct: 1   MVGEMTNNGRIRPSFPVKD------LTSNEGSEYG---GPVEFTREDVETLLHERIKYKS 51

Query: 105 KFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNK 164
           K+NYKERCEN MDY+KRLRLCI+WFQELE DYAFE E+L+NA+E++E+ CA++E+ L+ K
Sbjct: 52  KYNYKERCENTMDYVKRLRLCIRWFQELELDYAFEQEKLKNAMEMNEKHCADLEVNLKVK 111

Query: 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKA 224
           EEELN++I ELRK+FAS+Q +LAKE+++KLAA +SL +E+E R+ +E   A+++E+L K 
Sbjct: 112 EEELNMVIDELRKNFASVQVQLAKEQTEKLAANESLGKEREARIAVESLQAAITEELAKT 171

Query: 225 QEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENL 284
           Q ELQ+ANQRI ++NDMYKLLQEYNSSLQ YN+KLQ D+D AHE+IKRGEKE++ IVE++
Sbjct: 172 QGELQTANQRIQAVNDMYKLLQEYNSSLQLYNSKLQGDLDEAHENIKRGEKERTGIVESI 231

Query: 285 STLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344
             L+GQ+ +LQ+QL+  K SQD+ M+QKD LV+E+ S++VE+QQV+DDRD  +++++ L 
Sbjct: 232 GNLKGQFKALQDQLAASKVSQDDVMKQKDELVNEIVSLKVEIQQVKDDRDRHITEIETLQ 291

Query: 345 AEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK 404
           AE  K  +   +  +LE++C+ Q+ +I  L DQL A+E KL+V+DLS  E   EFE QK+
Sbjct: 292 AEATKQNDFKDTINELESKCSVQNKEIEELQDQLVASERKLQVADLSTFEKMNEFEEQKE 351

Query: 405 LINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL 441
            I EL+  LE+AE KLIEGEKLRK+LHNTI EL+ N+
Sbjct: 352 SIMELKGRLEEAELKLIEGEKLRKKLHNTIQELKGNI 388

Possible role in mitosis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q07970|ATK1_ARATH Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1

 Score =  351 bits (901), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 214/464 (46%), Positives = 293/464 (63%), Gaps = 31/464 (6%)

Query: 1   MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFS 60
           MAS NQN+PP           S N KK G+  ++ DK +K   E   GT      RQAFS
Sbjct: 1   MASRNQNRPP----------RSPNAKKEGLGGISFDKRRK--VETQGGTGR----RQAFS 44

Query: 61  VVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIK 120
            VN  QD+ ++S+  S    ECG ++FT++++ ALLSE+ +   KF+ K + E M D IK
Sbjct: 45  AVNK-QDVTMNSDVGSI--EECGKVDFTKDEILALLSERAK-AGKFDTKAKIEQMTDIIK 100

Query: 121 RLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFA 180
           RL++C+KWFQ+ +  +  E E L+ +LE SEQK    EL  R KEEEL   I +L ++  
Sbjct: 101 RLKVCVKWFQQADETHVQEKENLKVSLESSEQKYNHKELEARTKEEELQATISKLEENVV 160

Query: 181 SLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIND 240
           SL EKLAKEES    A++   REKE R+  E+  ASL E+L K +EE  +A Q++ S+ D
Sbjct: 161 SLHEKLAKEESSTQDAIECHRREKEARVAAEKVQASLGEELDKVKEEKMAAKQKVTSLED 220

Query: 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST 300
           MYK LQEYN+SLQ YN+KLQ D++    ++ R EKEKS+I+ENLSTLRG   SLQ+QLS+
Sbjct: 221 MYKRLQEYNTSLQQYNSKLQTDLETVRAALTRAEKEKSSILENLSTLRGHSKSLQDQLSS 280

Query: 301 YKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------- 352
            +  QD+A++QKD+L+ EV ++R ELQQVRDDRD Q+ Q Q L+ E+ K++E        
Sbjct: 281 SRVLQDDAIKQKDSLLSEVTNLRNELQQVRDDRDRQVVQSQKLSEEIRKYQENVGKSSQE 340

Query: 353 ---LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINEL 409
              L   S  LE  C+ Q  ++  L  QLA A E+ +++D S   T+TEFE QK L+ EL
Sbjct: 341 LDILTAKSGSLEETCSLQKERLNMLEQQLAIANERQKMADASVSLTRTEFEEQKHLLCEL 400

Query: 410 RNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKD 453
           ++ L D E++L EGE LRK+LHNTILEL+ N+      R  L D
Sbjct: 401 QDRLADMEHQLCEGELLRKKLHNTILELKGNIRVFCRVRPLLPD 444

Kinesin that supports microtubule movement in an ATP-dependent manner and has a minus-end directed polarity. Plays a crucial role in spindle morphogenesis in male Arabidopsis meiosis.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JGP4|ATK5_ARATH Kinesin-5 OS=Arabidopsis thaliana GN=ATK5 PE=2 SV=1

 Score =  333 bits (853), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 200/464 (43%), Positives = 293/464 (63%), Gaps = 34/464 (7%)

Query: 1   MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFS 60
           M   NQN+ P+         PS N KK  +  +  DK +K    +  GT      RQ  S
Sbjct: 1   MPLRNQNRAPL---------PSPNVKKEALSSIPFDKRRK----ETQGTGR----RQVLS 43

Query: 61  VVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIK 120
            VN  QD    +N    +  ECG +EFT+++V ALL+E+ +   KF+ K + E M D IK
Sbjct: 44  TVNR-QD----ANSDVGSTEECGKVEFTKDEVLALLNERAK-AGKFDTKGKIEQMTDIIK 97

Query: 121 RLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFA 180
           +L++C++W+Q+++  +  + E L ++L+ +E++ ++ EL  + KEEEL   I E++++  
Sbjct: 98  KLKVCVRWYQQVDETHVQDKENLSSSLQSAEKRYSDKELDAKTKEEELRATITEMKENIE 157

Query: 181 SLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIND 240
           SLQEKL+KE+  KL A+++  REK+ R+  E+   SL E+L K +EE  +A Q++ S+ D
Sbjct: 158 SLQEKLSKEKLSKLDAIENHRREKDCRVVAEKLQVSLREELDKVKEEKMAAKQKVTSLED 217

Query: 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST 300
           MYK LQEYN+SLQ YNTKLQ D++ A E+  R EKEKS+I+ENL+TLRG   SLQ+QL++
Sbjct: 218 MYKRLQEYNTSLQQYNTKLQTDLEVAREAHTRAEKEKSSILENLTTLRGHSKSLQDQLAS 277

Query: 301 YKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------- 352
            + SQDEA++QKD+L+ EV +++ ELQQVRDDRD  + Q Q L  E++ +KE        
Sbjct: 278 SRVSQDEAVKQKDSLLMEVNNLQSELQQVRDDRDRHVVQSQKLAGEILMYKESVGKSSHE 337

Query: 353 ---LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINEL 409
              L   S  LE  C+ Q  +I+ L  +LA A+EKL++ DLS   T TEFE QK+ ++EL
Sbjct: 338 LDILIAKSGSLEETCSLQKERIKMLEQELAFAKEKLKMVDLSMSHTMTEFEEQKQCMHEL 397

Query: 410 RNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKD 453
           ++ L D E +L EGE LRK+LHNTILEL+ N+      R  L D
Sbjct: 398 QDRLADTERQLFEGELLRKKLHNTILELKGNIRVFCRVRPLLPD 441

Kinesin that supports microtubule movement in an ATP-dependent manner and that functions as a minus-end directed motor as well as a plus-end tracking protein. During mitosis, is involved in early spindle assembly. Participates in the capture of antiparallel interpolar microtubules and helps in generating force to coalign microtubules.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
224124204	752	predicted protein [Populus trichocarpa]	0.859	0.526	0.724	1e-161
147768264	834	hypothetical protein VITISV_028758 [Viti	0.971	0.537	0.616	1e-155
255563647	780	kinesin, putative [Ricinus communis] gi|	0.934	0.552	0.606	1e-146
224115186	712	predicted protein [Populus trichocarpa]	0.772	0.5	0.674	1e-145
225461150	763	PREDICTED: kinesin-3 [Vitis vinifera] gi	0.878	0.530	0.627	1e-143
356543172	799	PREDICTED: kinesin-3-like isoform 1 [Gly	0.963	0.555	0.570	1e-143
356543174	805	PREDICTED: kinesin-3-like isoform 2 [Gly	0.976	0.559	0.568	1e-142
18423656	754	kinesin 3 [Arabidopsis thaliana] gi|1170	0.859	0.525	0.624	1e-141
10176794	746	kinesin-like protein [Arabidopsis thalia	0.841	0.520	0.619	1e-138
358345284	684	Kinesin-3, partial [Medicago truncatula]	0.941	0.634	0.538	1e-131

>gi|224124204|ref|XP_002319271.1| predicted protein [Populus trichocarpa] gi|222857647|gb|EEE95194.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 287/396 (72%), Positives = 338/396 (85%)

Query: 46  MVGTANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNK 105
           MVGTANN R+R AFSVVNG Q+ GL+S P SNAGSE G  EFTREDV ALL E+M+YKNK
Sbjct: 1   MVGTANNGRMRHAFSVVNGEQEGGLNSAPPSNAGSEYGGFEFTREDVYALLCERMKYKNK 60

Query: 106 FNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKE 165
           FNYKERCENMMDYIKRLRLCIKWFQELEG Y FE E+L+NAL+ +E +CAEM+L ++NKE
Sbjct: 61  FNYKERCENMMDYIKRLRLCIKWFQELEGSYLFEQEKLQNALDFAESRCAEMDLIVKNKE 120

Query: 166 EELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQ 225
           EELNLIIVELRKS ASLQEKL+KEES+KLAA+DSLAREKE RL +E+S ASLSE+LGK Q
Sbjct: 121 EELNLIIVELRKSLASLQEKLSKEESEKLAAMDSLAREKEARLTVEKSQASLSEELGKIQ 180

Query: 226 EELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLS 285
            ELQ+ANQRI S++DMYKLLQEYNSSLQ YN+KLQ D+D AHE++KRGEKEK+AIVENLS
Sbjct: 181 GELQNANQRITSVSDMYKLLQEYNSSLQLYNSKLQTDLDTAHENVKRGEKEKAAIVENLS 240

Query: 286 TLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTA 345
           TL GQY+SLQ+Q ++ KAS ++A +QKDALV EVAS+R ELQQVR+DRD    QVQ LTA
Sbjct: 241 TLGGQYMSLQDQFNSCKASVNDAAKQKDALVKEVASVRAELQQVREDRDQLQLQVQTLTA 300

Query: 346 EVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKL 405
           EV+  +EL + S +L+ RC SQSNQ+++L DQL AA+ KL VSDLSA E KTEFE QKKL
Sbjct: 301 EVVNCEELVIKSNELKERCVSQSNQLKTLQDQLDAAQNKLRVSDLSAFEAKTEFEEQKKL 360

Query: 406 INELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL 441
           I EL+N LEDAE K++EGE LRK+LHNTILEL+ N+
Sbjct: 361 ICELQNRLEDAELKIVEGETLRKKLHNTILELKGNI 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768264|emb|CAN78128.1| hypothetical protein VITISV_028758 [Vitis vinifera]

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 286/464 (61%), Positives = 360/464 (77%), Gaps = 16/464 (3%)

Query: 1   MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFS 60
           MAS NQNKPP+ +     ASPS+N+    VDEV  DK +K G  KMVG AN+ R RQAFS
Sbjct: 1   MASKNQNKPPIPNFTNAPASPSNNQPV--VDEVAVDKRRKIGLGKMVGPANSGRTRQAFS 58

Query: 61  VVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIK 120
           VVNG Q+ G    P S+AGSECG IEFT+EDVEALL+EKM+ KNKFN KE+C+ MMDYI+
Sbjct: 59  VVNGGQENG---GPPSSAGSECGGIEFTKEDVEALLNEKMKGKNKFNLKEKCDQMMDYIR 115

Query: 121 RLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFA 180
           +LRLCIKWFQELEG Y  E E+LRN L+ +E+KC E+E+ ++NKEEELN II+ELRK+ A
Sbjct: 116 KLRLCIKWFQELEGSYLLEQEKLRNMLDCAERKCNELEVLMKNKEEELNSIIMELRKNCA 175

Query: 181 SLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIND 240
           SL EKL KEES+KLAA+DSL REKE RL  ER   SL+++LGKAQ E  SA+Q+I S+ND
Sbjct: 176 SLHEKLTKEESEKLAAMDSLTREKEARLAAERLQTSLTDELGKAQREHLSASQKITSLND 235

Query: 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST 300
           MYK LQEYN+SLQ YN+KLQ ++   +E++KR EKEK+A+VENLSTLRG Y +LQ+Q + 
Sbjct: 236 MYKRLQEYNTSLQQYNSKLQTELPTVNEALKRVEKEKAAVVENLSTLRGHYNALQDQFTL 295

Query: 301 YKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------- 352
            +ASQDEAM+Q++ALV++V  +R ELQQ RDDRD  LSQV+ LT EV+K+KE        
Sbjct: 296 TRASQDEAMKQREALVNDVVCLRGELQQARDDRDRYLSQVEVLTTEVVKYKECTGKSFAE 355

Query: 353 ---LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINEL 409
              L++ S +LEARC SQS+QI++L D+L AAE+KL+VSDLSA+ET+TE+E QKKLI++L
Sbjct: 356 LENLSLKSNELEARCLSQSDQIKALQDKLGAAEKKLQVSDLSAMETRTEYEEQKKLIHDL 415

Query: 410 RNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKD 453
           +N L DAE K+IEGEKLRK+LHNTILEL+ N+      R  L D
Sbjct: 416 QNRLADAEIKIIEGEKLRKKLHNTILELKGNIRVFCRVRPLLAD 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563647|ref|XP_002522825.1| kinesin, putative [Ricinus communis] gi|223537909|gb|EEF39523.1| kinesin, putative [Ricinus communis]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 277/457 (60%), Positives = 341/457 (74%), Gaps = 26/457 (5%)

Query: 1   MASNNQNKPPVLSNN--ITKASPSSNKKKLGVDEVTC-DKEQKFGAEKMVGTANNARIRQ 57
           MAS NQNKPP  +N+  I   +PSS+KK +G +EV C DK  K   E+MVGTA   R+RQ
Sbjct: 1   MASKNQNKPPFTNNSSPIITTTPSSHKKYIG-NEVQCIDKWLKLEVEEMVGTATYGRMRQ 59

Query: 58  AFSVVNGIQDLGLS-SNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMM 116
           AFS+VNG Q+L    S P SNAGSE G IEFTREDV+ALLSE+M+YKNKFNYKERC+NMM
Sbjct: 60  AFSIVNGDQELATPNSAPPSNAGSEYGGIEFTREDVDALLSERMKYKNKFNYKERCDNMM 119

Query: 117 DYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELR 176
           DYIKRLRLCI+WFQELEG Y FE E+L+NALE +E +CAEMEL L+NKEEELNLIIVELR
Sbjct: 120 DYIKRLRLCIRWFQELEGCYLFEQEKLQNALEFNESQCAEMELMLKNKEEELNLIIVELR 179

Query: 177 KSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIA 236
           +S AS+QEK++KEE++KLAA+D+LAREK+ RL+ E+S  SLSE+LGK Q ELQSANQRI 
Sbjct: 180 RSLASVQEKVSKEEAEKLAAIDALAREKDARLSFEKSQTSLSEELGKVQAELQSANQRIT 239

Query: 237 SINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQE 296
           S++DMYKLLQEYNSSLQ YN                     S+ + +L  L+ ++    +
Sbjct: 240 SVSDMYKLLQEYNSSLQLYN---------------------SSSLASLEALKCKHGVPNQ 278

Query: 297 QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVS 356
            +    AS DE  +QKDALVHEVAS+RV+LQQ R+DRD  LS+ Q L A V+  +ELA  
Sbjct: 279 IMLLLDASLDEVTKQKDALVHEVASLRVDLQQARNDRDRHLSEAQDLMARVVNCEELAAK 338

Query: 357 SEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDA 416
           S +LE RC+SQS QIR++ ++L  A+ KL VSDLSA E KTEFE QK+LI EL++ LEDA
Sbjct: 339 SNELEERCSSQSKQIRTMQEELETAQSKLRVSDLSAFEIKTEFEAQKRLITELQSRLEDA 398

Query: 417 EYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKD 453
           E+KL+EGEKLRK+LHNTILEL+ N+      R  L D
Sbjct: 399 EFKLVEGEKLRKKLHNTILELKGNIRVFCRVRPLLPD 435

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115186|ref|XP_002316967.1| predicted protein [Populus trichocarpa] gi|222860032|gb|EEE97579.1| predicted protein [Populus trichocarpa]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/396 (67%), Positives = 308/396 (77%), Gaps = 40/396 (10%)

Query: 46  MVGTANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNK 105
           MVGTANN R+R AFSVVNG +++GL+S P SNAGSE G  EFTREDV  LL+E+M+YKNK
Sbjct: 1   MVGTANNGRMRHAFSVVNGEEEVGLNSVPPSNAGSEYGGFEFTREDVYGLLNERMKYKNK 60

Query: 106 FNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKE 165
           FNYKERCENMMDYIKRLRLCIKWFQELEG Y FE E+L+NAL+ +E KCAEM+L L+NKE
Sbjct: 61  FNYKERCENMMDYIKRLRLCIKWFQELEGGYLFEQEKLQNALDFTESKCAEMDLMLKNKE 120

Query: 166 EELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQ 225
           EELNLIIVELRKS ASLQEKL+KEES+KLAALDSLAREKE RL +E+S ASL E+ GK Q
Sbjct: 121 EELNLIIVELRKSLASLQEKLSKEESEKLAALDSLAREKEARLTVEKSQASLLEEQGKIQ 180

Query: 226 EELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLS 285
            ELQSANQRI S++DMYKLLQEYNSSLQ YN+KLQ D+D AHE++KRGEKEK+AIVENLS
Sbjct: 181 GELQSANQRITSVSDMYKLLQEYNSSLQLYNSKLQTDLDTAHENVKRGEKEKAAIVENLS 240

Query: 286 TLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTA 345
           TLRGQ +SLQ+Q ++ KAS DE  +QKD LV+EVAS+R ELQQV +DRD  L QVQ LTA
Sbjct: 241 TLRGQCMSLQDQYNSCKASVDEVAKQKDTLVNEVASLRAELQQVSEDRDSLLLQVQTLTA 300

Query: 346 EVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKL 405
                                                   EVSDLS  ETKTEFE QKKL
Sbjct: 301 ----------------------------------------EVSDLSVFETKTEFEAQKKL 320

Query: 406 INELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL 441
           I+EL+N LEDAE K++EGEK RK+LHNTILEL+ N+
Sbjct: 321 ISELQNRLEDAELKIVEGEKFRKKLHNTILELKGNI 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461150|ref|XP_002282749.1| PREDICTED: kinesin-3 [Vitis vinifera] gi|302143201|emb|CBI20496.3| unnamed protein product [Vitis vinifera]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/419 (62%), Positives = 332/419 (79%), Gaps = 14/419 (3%)

Query: 46  MVGTANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNK 105
           MVG AN+ R RQAFSVVNG Q+ G    P S+AGSECG IEFT+EDVEALL+EKM+ KNK
Sbjct: 1   MVGPANSGRTRQAFSVVNGGQENG---GPPSSAGSECGGIEFTKEDVEALLNEKMKGKNK 57

Query: 106 FNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKE 165
           FN KE+C+ MMDYI++LRLCIKWFQELEG Y  E E+LRN L+ +E+KC E+E+ ++NKE
Sbjct: 58  FNLKEKCDQMMDYIRKLRLCIKWFQELEGSYLLEQEKLRNMLDCAERKCNELEVLMKNKE 117

Query: 166 EELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQ 225
           EELN II+ELRK+ ASL EKL KEES+KLAA+DSL REKE RL  ER   SL+++LGKAQ
Sbjct: 118 EELNSIIMELRKNCASLHEKLTKEESEKLAAMDSLTREKEARLAAERLQTSLTDELGKAQ 177

Query: 226 EELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLS 285
            E  SA+Q+I S+NDMYK LQEYN+SLQ YN+KLQ ++   +E++KR EKEK+A+VENLS
Sbjct: 178 REHLSASQKITSLNDMYKRLQEYNTSLQQYNSKLQTELPTVNEALKRVEKEKAAVVENLS 237

Query: 286 TLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTA 345
           TLRG Y +LQ+Q +  +ASQDEAM+Q++ALV++V  +R ELQQ RDDRD  LSQV+ LT 
Sbjct: 238 TLRGHYNALQDQFTLTRASQDEAMKQREALVNDVVCLRGELQQARDDRDRYLSQVEVLTT 297

Query: 346 EVIKHKE-----------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALE 394
           EV+K+KE           L++ S +LEARC SQS+QI++L D+L AAE+KL+VSDLSA+E
Sbjct: 298 EVVKYKECTGKSFAELENLSLKSNELEARCLSQSDQIKALQDKLGAAEKKLQVSDLSAME 357

Query: 395 TKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKD 453
           T+TE+E QKKLI++L+N L DAE K+IEGEKLRK+LHNTILEL+ N+      R  L D
Sbjct: 358 TRTEYEEQKKLIHDLQNRLADAEIKIIEGEKLRKKLHNTILELKGNIRVFCRVRPLLAD 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543172|ref|XP_003540037.1| PREDICTED: kinesin-3-like isoform 1 [Glycine max]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 266/466 (57%), Positives = 351/466 (75%), Gaps = 22/466 (4%)

Query: 1   MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCD-KEQKFGAEKMVGTANNARIRQAF 59
           M + NQN+PP+  +  +   P SN K    D +  D KEQ+ GAEKMVGT  N R RQAF
Sbjct: 1   MVTKNQNRPPL--SLTSTPPPPSNSKNFEGDVLLLDNKEQRVGAEKMVGTPINGRTRQAF 58

Query: 60  SVVNG-IQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDY 118
           +VVNG + DLG SS P SNAGS+ G IEFTREDVEALLSEK + K++FNYKERCENMMDY
Sbjct: 59  TVVNGGVHDLGPSSAPPSNAGSDYGVIEFTREDVEALLSEKAKRKDRFNYKERCENMMDY 118

Query: 119 IKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKS 178
           IKRL++CI+WFQ+LE  Y+ E E+L+N+LEL++QKC E+EL L+ KEEELN II E+R++
Sbjct: 119 IKRLKVCIRWFQDLEMYYSLEQEKLKNSLELTQQKCIEIELLLKIKEEELNSIISEMRRN 178

Query: 179 FASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASI 238
             SLQEKL KEE++K AA +SL +E+E RL++ERSH++LSEDLG+AQ ++QSANQ+IAS+
Sbjct: 179 CTSLQEKLIKEETEKSAAAESLVKEREARLDIERSHSTLSEDLGRAQRDMQSANQKIASL 238

Query: 239 NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQL 298
           N+MYK LQ+Y +SLQ YN KL  ++ +  + +KR EKEK+ IVEN++ LRG       QL
Sbjct: 239 NEMYKRLQDYITSLQQYNGKLHSELSSVEDELKRVEKEKATIVENITMLRG-------QL 291

Query: 299 STYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE------ 352
           +   +SQ+EA++QKD L  EV+S+R ELQQVRD+RD QLSQVQ L++E+ K KE      
Sbjct: 292 TISVSSQEEAIKQKDVLATEVSSLRGELQQVRDERDRQLSQVQTLSSELEKVKESKKHSS 351

Query: 353 -----LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLIN 407
                L + + DLE +C+ + NQI++L +QLA AE+KL+VS++SA ET+TE+EGQ+K +N
Sbjct: 352 TELDSLTLKANDLEEKCSLKDNQIKALEEQLATAEKKLQVSNISAYETRTEYEGQQKFVN 411

Query: 408 ELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKD 453
           EL+  L DAEYKLIEGE+LRK+LHNTILEL+ N+      R  L D
Sbjct: 412 ELQRRLADAEYKLIEGERLRKKLHNTILELKGNIRVFCRVRPLLAD 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543174|ref|XP_003540038.1| PREDICTED: kinesin-3-like isoform 2 [Glycine max]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 265/466 (56%), Positives = 352/466 (75%), Gaps = 16/466 (3%)

Query: 1   MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCD-KEQKFGAEKMVGTANNARIRQAF 59
           M + NQN+PP+  +  +   P SN K    D +  D KEQ+ GAEKMVGT  N R RQAF
Sbjct: 1   MVTKNQNRPPL--SLTSTPPPPSNSKNFEGDVLLLDNKEQRVGAEKMVGTPINGRTRQAF 58

Query: 60  SVVNG-IQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDY 118
           +VVNG + DLG SS P SNAGS+ G IEFTREDVEALLSEK + K++FNYKERCENMMDY
Sbjct: 59  TVVNGGVHDLGPSSAPPSNAGSDYGVIEFTREDVEALLSEKAKRKDRFNYKERCENMMDY 118

Query: 119 IKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKS 178
           IKRL++CI+WFQ+LE  Y+ E E+L+N+LEL++QKC E+EL L+ KEEELN II E+R++
Sbjct: 119 IKRLKVCIRWFQDLEMYYSLEQEKLKNSLELTQQKCIEIELLLKIKEEELNSIISEMRRN 178

Query: 179 FASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASI 238
             SLQEKL KEE++K AA +SL +E+E RL++ERSH++LSEDLG+AQ ++QSANQ+IAS+
Sbjct: 179 CTSLQEKLIKEETEKSAAAESLVKEREARLDIERSHSTLSEDLGRAQRDMQSANQKIASL 238

Query: 239 NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQL 298
           N+MYK LQ+Y +SLQ YN KL  ++ +  + +KR EKEK+ IVEN++ LRGQ +++    
Sbjct: 239 NEMYKRLQDYITSLQQYNGKLHSELSSVEDELKRVEKEKATIVENITMLRGQ-LTISVVS 297

Query: 299 STYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE------ 352
               +SQ+EA++QKD L  EV+S+R ELQQVRD+RD QLSQVQ L++E+ K KE      
Sbjct: 298 LLSHSSQEEAIKQKDVLATEVSSLRGELQQVRDERDRQLSQVQTLSSELEKVKESKKHSS 357

Query: 353 -----LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLIN 407
                L + + DLE +C+ + NQI++L +QLA AE+KL+VS++SA ET+TE+EGQ+K +N
Sbjct: 358 TELDSLTLKANDLEEKCSLKDNQIKALEEQLATAEKKLQVSNISAYETRTEYEGQQKFVN 417

Query: 408 ELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKD 453
           EL+  L DAEYKLIEGE+LRK+LHNTILEL+ N+      R  L D
Sbjct: 418 ELQRRLADAEYKLIEGERLRKKLHNTILELKGNIRVFCRVRPLLAD 463

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423656|ref|NP_568811.1| kinesin 3 [Arabidopsis thaliana] gi|1170621|sp|P46875.1|ATK3_ARATH RecName: Full=Kinesin-3; AltName: Full=Kinesin-like protein C gi|1438844|dbj|BAA04674.1| heavy chain polypeptide of kinesin-like protein [Arabidopsis thaliana] gi|27808616|gb|AAO24588.1| At5g54670 [Arabidopsis thaliana] gi|110736249|dbj|BAF00095.1| heavy chain polypeptide of kinesin like protein [Arabidopsis thaliana] gi|332009142|gb|AED96525.1| kinesin 3 [Arabidopsis thaliana]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/397 (62%), Positives = 324/397 (81%), Gaps = 1/397 (0%)

Query: 46  MVGT-ANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKN 104
           MVG  ANN RIR AF V NG +DL  +S PAS  GSE G +EFTREDVE LL+E+++YK+
Sbjct: 1   MVGAMANNGRIRSAFPVTNGSKDLTPNSAPASTTGSEYGPVEFTREDVETLLNERIKYKS 60

Query: 105 KFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNK 164
           KFNYKERCENMMDYIKRLRLCI+WFQELE DYAFE E+L+NALEL+E+ C +ME++L+NK
Sbjct: 61  KFNYKERCENMMDYIKRLRLCIRWFQELELDYAFEQEKLKNALELNEKHCVDMEVSLKNK 120

Query: 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKA 224
           EEELN+II ELRK+F S+Q +LA+E+++KLAA DSL +EKE RL++E++ A L+E+LGKA
Sbjct: 121 EEELNMIIEELRKNFESVQVQLAREQTEKLAANDSLGKEKEARLSVEKAQAGLTEELGKA 180

Query: 225 QEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENL 284
           Q +LQ+ANQRI S+NDMYKLLQEYNSSLQ YN+KLQ D+D AHE+IKRGEKE++AI+EN+
Sbjct: 181 QGDLQTANQRIQSVNDMYKLLQEYNSSLQLYNSKLQGDLDEAHETIKRGEKERTAIIENI 240

Query: 285 STLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344
             L+GQ+ +LQEQL+  KASQ++ M+QK  LV+E+AS++VELQQV+DDRD  L +V+ L 
Sbjct: 241 GNLKGQFSALQEQLAASKASQEDIMKQKGELVNEIASLKVELQQVKDDRDRHLVEVKTLQ 300

Query: 345 AEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK 404
            E  K+ +   +  +LE  C+SQS QIR L D+L  +E +L+VSDLS  E   E+E QK+
Sbjct: 301 TEATKYNDFKDAITELETTCSSQSTQIRQLQDRLVNSERRLQVSDLSTFEKMNEYEDQKQ 360

Query: 405 LINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL 441
            I +L++ +E+AE KL+EGEKLRK+LHNTILEL+ N+
Sbjct: 361 SIIDLKSRVEEAELKLVEGEKLRKKLHNTILELKGNI 397

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10176794|dbj|BAB09933.1| kinesin-like protein [Arabidopsis thaliana]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 246/397 (61%), Positives = 319/397 (80%), Gaps = 9/397 (2%)

Query: 46  MVGT-ANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKN 104
           MVG  ANN RIR AF V NG +DL  +S PAS  GSE G +EFTREDVE LL+E+++YK+
Sbjct: 1   MVGAMANNGRIRSAFPVTNGSKDLTPNSAPASTTGSEYGPVEFTREDVETLLNERIKYKS 60

Query: 105 KFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNK 164
           KFNYKERCENMMDYIKRLRLCI+WFQELE DYAFE E+L+NALEL+E+ C +ME++L+NK
Sbjct: 61  KFNYKERCENMMDYIKRLRLCIRWFQELELDYAFEQEKLKNALELNEKHCVDMEVSLKNK 120

Query: 165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKA 224
           EEELN+II ELRK+F S+Q +LA+E+++KLAA DSL +EKE RL++E++ A L+E+LGKA
Sbjct: 121 EEELNMIIEELRKNFESVQVQLAREQTEKLAANDSLGKEKEARLSVEKAQAGLTEELGKA 180

Query: 225 QEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENL 284
           Q +LQ+ANQRI S+NDMYKLLQEYNSSLQ YN+KLQ D+D AHE+IKRGEKE++AI+EN+
Sbjct: 181 QGDLQTANQRIQSVNDMYKLLQEYNSSLQLYNSKLQGDLDEAHETIKRGEKERTAIIENI 240

Query: 285 STLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344
             L+GQ+ +LQEQL+  KASQ++ M+QK  LV+E+AS++VELQQV+DDRD  L +V+ L 
Sbjct: 241 GNLKGQFSALQEQLAASKASQEDIMKQKGELVNEIASLKVELQQVKDDRDRHLVEVKTLQ 300

Query: 345 AEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK 404
            E  K+ +   +  +LE  C+SQS QIR L D+L        VSDLS  E   E+E QK+
Sbjct: 301 TEATKYNDFKDAITELETTCSSQSTQIRQLQDRL--------VSDLSTFEKMNEYEDQKQ 352

Query: 405 LINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL 441
            I +L++ +E+AE KL+EGEKLRK+LHNTILEL+ N+
Sbjct: 353 SIIDLKSRVEEAELKLVEGEKLRKKLHNTILELKGNI 389

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345284|ref|XP_003636711.1| Kinesin-3, partial [Medicago truncatula] gi|355502646|gb|AES83849.1| Kinesin-3, partial [Medicago truncatula]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/464 (53%), Positives = 341/464 (73%), Gaps = 30/464 (6%)

Query: 1   MASNNQNKPPVLSNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFS 60
           M +  QN PP+   +++  SP+ +K  +G  +  C        E MV T  N RIRQA +
Sbjct: 1   MVTKIQNWPPL---SLSHTSPTPSKNFVG--DNNC-------LETMVETPINGRIRQALT 48

Query: 61  VVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIK 120
           VVNG  D+GLSS P SNAGS+ G IEFTREDVEALL+EK + K +FNYKERCENM+DYIK
Sbjct: 49  VVNGGHDVGLSSAPPSNAGSDYGVIEFTREDVEALLNEKAKKKERFNYKERCENMVDYIK 108

Query: 121 RLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFA 180
           RL++CI+WFQ+LE  Y+ + E+L+N+LE+++QK  E+E+ L+ KEEELNLII+E+RK+  
Sbjct: 109 RLKVCIRWFQDLEMSYSIDQEKLKNSLEMTKQKSIEIEMLLKIKEEELNLIIIEMRKNCT 168

Query: 181 SLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIND 240
           SLQEKL KEE++K AA++SL++E+E RL++ERSH +LSEDLGKA+ E+QSANQ+I+S+N+
Sbjct: 169 SLQEKLIKEEAEKSAAVESLSKEREARLDIERSHTTLSEDLGKAEREIQSANQKISSLNE 228

Query: 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST 300
           MYK LQEY +SLQ YN KL  ++ +  + +KR EKEK+   EN++ L+G       QL+ 
Sbjct: 229 MYKRLQEYITSLQQYNGKLHTELSSVEDELKRVEKEKATAEENIAMLKG-------QLTL 281

Query: 301 YKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------- 352
             +SQ+EA +QKD L  EV SMR EL+QVRDDRD QLSQ Q+L AE +K KE        
Sbjct: 282 SISSQEEATKQKDDLASEVYSMRGELKQVRDDRDRQLSQAQSLDAEFMKLKESRENSCIE 341

Query: 353 ---LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINEL 409
              L + + +LE + + + NQI++L ++LAAAE+KL+V+D+S  ET+TEFEGQ+KL++EL
Sbjct: 342 LDSLTLKANELEEKSSLKENQIKALQEKLAAAEKKLQVTDVSVFETRTEFEGQQKLVDEL 401

Query: 410 RNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKD 453
           +  LED+EYKLIEGE+LRK+LHNTILEL+ N+      R  L D
Sbjct: 402 QRRLEDSEYKLIEGERLRKKLHNTILELKGNIRVFCRVRPLLPD 445

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	461
TAIR|locus:2157533	754	ATK3 "kinesin 3" [Arabidopsis	0.859	0.525	0.624	5e-131
TAIR|locus:2136437	745	ATK2 "kinesin 2" [Arabidopsis	0.837	0.518	0.572	4.2e-118
TAIR|locus:2127378	793	ATK1 "kinesin 1" [Arabidopsis	0.908	0.528	0.465	8.1e-92
TAIR|locus:2115713	790	ATK5 "kinesin 5" [Arabidopsis	0.902	0.526	0.439	5.3e-88
UNIPROTKB|F1ST04	1196	CGN "Uncharacterized protein"	0.885	0.341	0.236	5.4e-13
UNIPROTKB|A7YH32	1190	CGN "Cingulin" [Canis lupus fa	0.885	0.342	0.234	9e-13
UNIPROTKB|F1PLU8	1196	CGN "Cingulin" [Canis lupus fa	0.885	0.341	0.234	9e-13
UNIPROTKB|F1NCD4	1335	MYH9 "Myosin-9" [Gallus gallus	0.691	0.238	0.231	1.7e-12
UNIPROTKB|F1MYN2	1194	CGN "Uncharacterized protein"	0.885	0.341	0.229	4.1e-12
UNIPROTKB|H0Y6I0	2099	GOLGA4 "Golgin subfamily A mem	0.752	0.165	0.214	4.9e-12

TAIR|locus:2157533 ATK3 "kinesin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
 Identities = 248/397 (62%), Positives = 324/397 (81%)

Query:    46 MVGT-ANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKN 104
             MVG  ANN RIR AF V NG +DL  +S PAS  GSE G +EFTREDVE LL+E+++YK+
Sbjct:     1 MVGAMANNGRIRSAFPVTNGSKDLTPNSAPASTTGSEYGPVEFTREDVETLLNERIKYKS 60

Query:   105 KFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNK 164
             KFNYKERCENMMDYIKRLRLCI+WFQELE DYAFE E+L+NALEL+E+ C +ME++L+NK
Sbjct:    61 KFNYKERCENMMDYIKRLRLCIRWFQELELDYAFEQEKLKNALELNEKHCVDMEVSLKNK 120

Query:   165 EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKA 224
             EEELN+II ELRK+F S+Q +LA+E+++KLAA DSL +EKE RL++E++ A L+E+LGKA
Sbjct:   121 EEELNMIIEELRKNFESVQVQLAREQTEKLAANDSLGKEKEARLSVEKAQAGLTEELGKA 180

Query:   225 QEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENL 284
             Q +LQ+ANQRI S+NDMYKLLQEYNSSLQ YN+KLQ D+D AHE+IKRGEKE++AI+EN+
Sbjct:   181 QGDLQTANQRIQSVNDMYKLLQEYNSSLQLYNSKLQGDLDEAHETIKRGEKERTAIIENI 240

Query:   285 STLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT 344
               L+GQ+ +LQEQL+  KASQ++ M+QK  LV+E+AS++VELQQV+DDRD  L +V+ L 
Sbjct:   241 GNLKGQFSALQEQLAASKASQEDIMKQKGELVNEIASLKVELQQVKDDRDRHLVEVKTLQ 300

Query:   345 AEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK 404
              E  K+ +   +  +LE  C+SQS QIR L D+L  +E +L+VSDLS  E   E+E QK+
Sbjct:   301 TEATKYNDFKDAITELETTCSSQSTQIRQLQDRLVNSERRLQVSDLSTFEKMNEYEDQKQ 360

Query:   405 LINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL 441
              I +L++ +E+AE KL+EGEKLRK+LHNTILEL+ N+
Sbjct:   361 SIIDLKSRVEEAELKLVEGEKLRKKLHNTILELKGNI 397

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0008017 "microtubule binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

TAIR|locus:2136437 ATK2 "kinesin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
 Identities = 228/398 (57%), Positives = 310/398 (77%)

Query:    46 MVGT-ANNARIRQAFSVVNGIQDLGLSSNPASNAGSECG-TIEFTREDVEALLSEKMRYK 103
             MVG   NN RIR +F V    +DL       SN GSE G  +EFTREDVE LL E+++YK
Sbjct:     1 MVGEMTNNGRIRPSFPV----KDL------TSNEGSEYGGPVEFTREDVETLLHERIKYK 50

Query:   104 NKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRN 163
             +K+NYKERCEN MDY+KRLRLCI+WFQELE DYAFE E+L+NA+E++E+ CA++E+ L+ 
Sbjct:    51 SKYNYKERCENTMDYVKRLRLCIRWFQELELDYAFEQEKLKNAMEMNEKHCADLEVNLKV 110

Query:   164 KEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGK 223
             KEEELN++I ELRK+FAS+Q +LAKE+++KLAA +SL +E+E R+ +E   A+++E+L K
Sbjct:   111 KEEELNMVIDELRKNFASVQVQLAKEQTEKLAANESLGKEREARIAVESLQAAITEELAK 170

Query:   224 AQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVEN 283
              Q ELQ+ANQRI ++NDMYKLLQEYNSSLQ YN+KLQ D+D AHE+IKRGEKE++ IVE+
Sbjct:   171 TQGELQTANQRIQAVNDMYKLLQEYNSSLQLYNSKLQGDLDEAHENIKRGEKERTGIVES 230

Query:   284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL 343
             +  L+GQ+ +LQ+QL+  K SQD+ M+QKD LV+E+ S++VE+QQV+DDRD  +++++ L
Sbjct:   231 IGNLKGQFKALQDQLAASKVSQDDVMKQKDELVNEIVSLKVEIQQVKDDRDRHITEIETL 290

Query:   344 TAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQK 403
              AE  K  +   +  +LE++C+ Q+ +I  L DQL A+E KL+V+DLS  E   EFE QK
Sbjct:   291 QAEATKQNDFKDTINELESKCSVQNKEIEELQDQLVASERKLQVADLSTFEKMNEFEEQK 350

Query:   404 KLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL 441
             + I EL+  LE+AE KLIEGEKLRK+LHNTI EL+ N+
Sbjct:   351 ESIMELKGRLEEAELKLIEGEKLRKKLHNTIQELKGNI 388

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0005871 "kinesin complex" evidence=ISS

GO:0008017 "microtubule binding" evidence=IDA

TAIR|locus:2127378 ATK1 "kinesin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 205/440 (46%), Positives = 284/440 (64%)

Query:    13 SNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFSVVNGIQDLGLSS 72
             S N  +   S N KK G+  ++ DK +K   E   GT      RQAFS VN  QD+ ++S
Sbjct:     3 SRNQNRPPRSPNAKKEGLGGISFDKRRK--VETQGGTGR----RQAFSAVNK-QDVTMNS 55

Query:    73 NPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQEL 132
             +  S    ECG ++FT++++ ALLSE+ +   KF+ K + E M D IKRL++C+KWFQ+ 
Sbjct:    56 DVGSI--EECGKVDFTKDEILALLSERAK-AGKFDTKAKIEQMTDIIKRLKVCVKWFQQA 112

Query:   133 EGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESD 192
             +  +  E E L+ +LE SEQK    EL  R KEEEL   I +L ++  SL EKLAKEES 
Sbjct:   113 DETHVQEKENLKVSLESSEQKYNHKELEARTKEEELQATISKLEENVVSLHEKLAKEESS 172

Query:   193 KLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSL 252
                A++   REKE R+  E+  ASL E+L K +EE  +A Q++ S+ DMYK LQEYN+SL
Sbjct:   173 TQDAIECHRREKEARVAAEKVQASLGEELDKVKEEKMAAKQKVTSLEDMYKRLQEYNTSL 232

Query:   253 QHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQK 312
             Q YN+KLQ D++    ++ R EKEKS+I+ENLSTLRG   SLQ+QLS+ +  QD+A++QK
Sbjct:   233 QQYNSKLQTDLETVRAALTRAEKEKSSILENLSTLRGHSKSLQDQLSSSRVLQDDAIKQK 292

Query:   313 DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-----------LAVSSEDLE 361
             D+L+ EV ++R ELQQVRDDRD Q+ Q Q L+ E+ K++E           L   S  LE
Sbjct:   293 DSLLSEVTNLRNELQQVRDDRDRQVVQSQKLSEEIRKYQENVGKSSQELDILTAKSGSLE 352

Query:   362 ARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI 421
               C+ Q  ++  L  QLA A E+ +++D S   T+TEFE QK L+ EL++ L D E++L 
Sbjct:   353 ETCSLQKERLNMLEQQLAIANERQKMADASVSLTRTEFEEQKHLLCELQDRLADMEHQLC 412

Query:   422 EGEKLRKRLHNTILELEVNL 441
             EGE LRK+LHNTILEL+ N+
Sbjct:   413 EGELLRKKLHNTILELKGNI 432

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0009971 "anastral spindle assembly involved in male meiosis" evidence=IMP

GO:0005872 "minus-end kinesin complex" evidence=TAS

GO:0008569 "minus-end-directed microtubule motor activity" evidence=IDA;TAS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005634 "nucleus" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

TAIR|locus:2115713 ATK5 "kinesin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 194/441 (43%), Positives = 285/441 (64%)

Query:    12 LSNNITKASPSSNKKKLGVDEVTCDKEQKFGAEKMVGTANNARIRQAFSVVNGIQDLGLS 71
             L N      PS N KK  +  +  DK +K    +  GT      RQ  S VN  QD    
Sbjct:     3 LRNQNRAPLPSPNVKKEALSSIPFDKRRK----ETQGTGR----RQVLSTVNR-QD---- 49

Query:    72 SNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQE 131
             +N    +  ECG +EFT+++V ALL+E+ +   KF+ K + E M D IK+L++C++W+Q+
Sbjct:    50 ANSDVGSTEECGKVEFTKDEVLALLNERAK-AGKFDTKGKIEQMTDIIKKLKVCVRWYQQ 108

Query:   132 LEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEES 191
             ++  +  + E L ++L+ +E++ ++ EL  + KEEEL   I E++++  SLQEKL+KE+ 
Sbjct:   109 VDETHVQDKENLSSSLQSAEKRYSDKELDAKTKEEELRATITEMKENIESLQEKLSKEKL 168

Query:   192 DKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSS 251
              KL A+++  REK+ R+  E+   SL E+L K +EE  +A Q++ S+ DMYK LQEYN+S
Sbjct:   169 SKLDAIENHRREKDCRVVAEKLQVSLREELDKVKEEKMAAKQKVTSLEDMYKRLQEYNTS 228

Query:   252 LQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQ 311
             LQ YNTKLQ D++ A E+  R EKEKS+I+ENL+TLRG   SLQ+QL++ + SQDEA++Q
Sbjct:   229 LQQYNTKLQTDLEVAREAHTRAEKEKSSILENLTTLRGHSKSLQDQLASSRVSQDEAVKQ 288

Query:   312 KDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-----------LAVSSEDL 360
             KD+L+ EV +++ ELQQVRDDRD  + Q Q L  E++ +KE           L   S  L
Sbjct:   289 KDSLLMEVNNLQSELQQVRDDRDRHVVQSQKLAGEILMYKESVGKSSHELDILIAKSGSL 348

Query:   361 EARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKL 420
             E  C+ Q  +I+ L  +LA A+EKL++ DLS   T TEFE QK+ ++EL++ L D E +L
Sbjct:   349 EETCSLQKERIKMLEQELAFAKEKLKMVDLSMSHTMTEFEEQKQCMHELQDRLADTERQL 408

Query:   421 IEGEKLRKRLHNTILELEVNL 441
              EGE LRK+LHNTILEL+ N+
Sbjct:   409 FEGELLRKKLHNTILELKGNI 429

GO:0003777 "microtubule motor activity" evidence=IEA;ISS;IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP

GO:0005876 "spindle microtubule" evidence=IDA

GO:0051225 "spindle assembly" evidence=RCA;IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042127 "regulation of cell proliferation" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0051258 "protein polymerization" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

UNIPROTKB|F1ST04 CGN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 206 (77.6 bits), Expect = 5.4e-13, P = 5.4e-13
 Identities = 103/435 (23%), Positives = 179/435 (41%)

Query:    36 DKEQKFGAEKMVGTAN-NARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEA 94
             +K+ K  AE+  G    N ++++    +   QD   +S     A +E   +   R  VE 
Sbjct:   659 EKQLKVEAERGRGLEQQNLQLQKTLQQLR--QDCEEASKAQMAAEAEAAVLGQRRTAVET 716

Query:    95 LLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKC 154
              L E     ++F  + R   +   +K  R         EG    E  RLR+ ++  E + 
Sbjct:   717 TLRETQEENDEF--RRRILGLEQQLKEARGLA------EGGEVAE-ARLRDKVQRLEAEK 767

Query:   155 AEMELALRNKEEELNLIIVELRKSFASLQEK---LAKEESDKLAALDSLAREKETRLNME 211
               +E AL   +EE   +    R   A L+E    LA+   ++ A   +L  E + R  + 
Sbjct:   768 QRLEEALNTAQEEEGSLAAAKRALEARLEEAQRGLARLGQEQQALNRALEEEGKQREALR 827

Query:   212 RSHASLSEDLGKAQEELQSANQRIASINDMYK-LLQEYNSSLQHYNTKLQKDIDAAHESI 270
             RS A L E        +   N+ +  I D  K  LQE  S L+ Y  K ++++  A    
Sbjct:   828 RSKAELEEQKRLLDRTVDRLNKELEQIGDDSKQALQELQSQLEDYKEKARREVADAQRQA 887

Query:   271 KRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR 330
             K    E       LS L+ +   L++ L   +A +D A   K+ L   +  +  E +  +
Sbjct:   888 KEWASEAEKTSGGLSRLQDETQRLRQALQASQADRDTARLDKELLAQRLQGLEQEAENKK 947

Query:   331 ---DDRDHQLS----QVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEE 383
                DD+  QL     +V  L AE+ + +       D   R   Q +Q+R+   Q  +A +
Sbjct:   948 RSQDDKSRQLKSLEEKVSRLEAELDEERSTVELLTDRMNRGRDQVDQLRTELMQERSARQ 1007

Query:   384 KLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEG--EKLRKRLHNTILELEVNL 441
              LE   +S LE + + + + +L +        A    +E    +L++RL     E  V  
Sbjct:  1008 DLECDKIS-LERQNK-DLKSRLASSEGFQKPSASLSQLESLNRELQERLQAEEREKTVLQ 1065

Query:   442 SSSALFRRGLKDIDV 456
             S++    R +K++ +
Sbjct:  1066 STNRKLERRVKELSI 1080

GO:0043296 "apical junction complex" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|A7YH32 CGN "Cingulin" [Canis lupus familiaris (taxid:9615)]

 Score = 204 (76.9 bits), Expect = 9.0e-13, P = 9.0e-13
 Identities = 102/435 (23%), Positives = 183/435 (42%)

Query:    36 DKEQKFGAEKMVGTAN-NARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEA 94
             +K+ K  A++  G    N ++++    +   QD   +S     A +E   +   R  VE 
Sbjct:   654 EKQLKVEADRGQGLEQQNLQLQKTLQQLR--QDCEEASKAQVAAEAEVAVLGQRRAAVEV 711

Query:    95 LLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKC 154
              L E     ++F  + R   +   +K  R         EG    E  RLR+ ++  E + 
Sbjct:   712 TLRETQEENDEF--RRRILGLEQQLKEARGLA------EGGEVAE-ARLRDKVQRLEAEK 762

Query:   155 AEMELALRNKEEELNLIIVELRKSFASLQEK---LAKEESDKLAALDSLAREKETRLNME 211
               +E AL   +EE   +    R   A L+E    LA+   ++LA   +L  E + R  + 
Sbjct:   763 QRLEEALNAAQEEEGSLAAAKRALEARLEEAQRGLARLGQEQLALNRALEEEGKQREALR 822

Query:   212 RSHASLSEDLGKAQEELQSANQRIASI-NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESI 270
             RS A L E      + +   N+ +  I ND  + LQ+  + L+ Y  K ++++  A    
Sbjct:   823 RSKAELEEQKRLLDKTVCQLNKELEQIGNDSKQALQQLQAQLEDYKEKARREVADAQRQA 882

Query:   271 KRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR 330
             K    E       LS L+ +   L++ L   +A +D A   K+ L   +  +  E +  +
Sbjct:   883 KEWATEAEKNSGGLSRLQDETQRLRQALQASQADRDTARLDKELLAQRLQGLEQEAENKK 942

Query:   331 ---DDRDHQLS----QVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEE 383
                DDR  QL     +V  L AE+ + +       +   R   Q +Q+RS   Q  +A +
Sbjct:   943 RSQDDRARQLKGLEEKVSRLEAELDEERSTVELLTERVTRGRDQVDQLRSELMQERSARQ 1002

Query:   384 KLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGE--KLRKRLHNTILELEVNL 441
              LE   +S LE + + + + +L +        A    +E +  +L++RL     E  V  
Sbjct:  1003 DLECDKIS-LERQNK-DLKSRLASSEGFQKPSASLSQLESQNQELQERLQAEEREKTVLQ 1060

Query:   442 SSSALFRRGLKDIDV 456
             S++    R +K++ +
Sbjct:  1061 STNRKLERRVKELSI 1075

GO:0005923 "tight junction" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1PLU8 CGN "Cingulin" [Canis lupus familiaris (taxid:9615)]

 Score = 204 (76.9 bits), Expect = 9.0e-13, P = 9.0e-13
 Identities = 102/435 (23%), Positives = 183/435 (42%)

Query:    36 DKEQKFGAEKMVGTAN-NARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEA 94
             +K+ K  A++  G    N ++++    +   QD   +S     A +E   +   R  VE 
Sbjct:   660 EKQLKVEADRGQGLEQQNLQLQKTLQQLR--QDCEEASKAQVAAEAEVAVLGQRRAAVEV 717

Query:    95 LLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKC 154
              L E     ++F  + R   +   +K  R         EG    E  RLR+ ++  E + 
Sbjct:   718 TLRETQEENDEF--RRRILGLEQQLKEARGLA------EGGEVAE-ARLRDKVQRLEAEK 768

Query:   155 AEMELALRNKEEELNLIIVELRKSFASLQEK---LAKEESDKLAALDSLAREKETRLNME 211
               +E AL   +EE   +    R   A L+E    LA+   ++LA   +L  E + R  + 
Sbjct:   769 QRLEEALNAAQEEEGSLAAAKRALEARLEEAQRGLARLGQEQLALNRALEEEGKQREALR 828

Query:   212 RSHASLSEDLGKAQEELQSANQRIASI-NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESI 270
             RS A L E      + +   N+ +  I ND  + LQ+  + L+ Y  K ++++  A    
Sbjct:   829 RSKAELEEQKRLLDKTVCQLNKELEQIGNDSKQALQQLQAQLEDYKEKARREVADAQRQA 888

Query:   271 KRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR 330
             K    E       LS L+ +   L++ L   +A +D A   K+ L   +  +  E +  +
Sbjct:   889 KEWATEAEKNSGGLSRLQDETQRLRQALQASQADRDTARLDKELLAQRLQGLEQEAENKK 948

Query:   331 ---DDRDHQLS----QVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEE 383
                DDR  QL     +V  L AE+ + +       +   R   Q +Q+RS   Q  +A +
Sbjct:   949 RSQDDRARQLKGLEEKVSRLEAELDEERSTVELLTERVTRGRDQVDQLRSELMQERSARQ 1008

Query:   384 KLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGE--KLRKRLHNTILELEVNL 441
              LE   +S LE + + + + +L +        A    +E +  +L++RL     E  V  
Sbjct:  1009 DLECDKIS-LERQNK-DLKSRLASSEGFQKPSASLSQLESQNQELQERLQAEEREKTVLQ 1066

Query:   442 SSSALFRRGLKDIDV 456
             S++    R +K++ +
Sbjct:  1067 STNRKLERRVKELSI 1081

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1NCD4 MYH9 "Myosin-9" [Gallus gallus (taxid:9031)]

 Score = 202 (76.2 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 81/350 (23%), Positives = 163/350 (46%)

Query:   109 KERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEEL 168
             +ERC+++    K+++  I   QELE +   E E  R  L+L +      E  L+  EE++
Sbjct:   303 EERCQHLQAEKKKMQQNI---QELE-EQLEEEESARQKLQLEK---VTTEAKLKKLEEDV 355

Query:   169 NLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRL-NMERSHASLSEDLG----- 222
               I++E +    + ++KL ++   +     +   EK   L  ++  H ++  DL      
Sbjct:   356 --IVLEDQNLKLAKEKKLLEDRMSEFTTNLTEEEEKSKSLAKLKNKHEAMITDLEERLRR 413

Query:   223 --KAQEELQSANQRI-ASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKE--- 276
               K ++EL+   +++    +D++  + E  + +     +L K  +    ++ R E+E   
Sbjct:   414 EEKQRQELEKTRRKLEGDSSDLHDQIAELQAQIAELKIQLSKKEEELQAALARVEEEAAQ 473

Query:   277 KSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQ 336
             K+  ++ +  L  Q   LQE L + +AS+++A +QK  L  E+ +++ EL+   D  D  
Sbjct:   474 KNMALKKIRELESQITELQEDLESERASRNKAEKQKRDLGEELEALKTELE---DTLDST 530

Query:   337 LSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETK 396
              +Q Q L ++  + +E+ V  + LE    +   QI+ +  + + A E+L          K
Sbjct:   531 AAQ-QELRSK--REQEVTVLKKTLEDEAKTHEAQIQEMRQKHSQAIEELAEQLEQTKRVK 587

Query:   397 TEFEGQKKLINELRNHLEDAEYKLIEG----EKLRKRLHNTILELEVNLS 442
                E  K+ +   R  L +    L++G    E  RK++   + EL+V  +
Sbjct:   588 ANLEKAKQALESERAELSNEVKVLLQGKGDAEHKRKKVDAQLQELQVKFT 637

GO:0005524 "ATP binding" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0000212 "meiotic spindle organization" evidence=IEA

GO:0000910 "cytokinesis" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0001768 "establishment of T cell polarity" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0001931 "uropod" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005826 "actomyosin contractile ring" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0006509 "membrane protein ectodomain proteolysis" evidence=IEA

GO:0007132 "meiotic metaphase I" evidence=IEA

GO:0007520 "myoblast fusion" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008305 "integrin complex" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0016460 "myosin II complex" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=IEA

GO:0030220 "platelet formation" evidence=IEA

GO:0030224 "monocyte differentiation" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0032796 "uropod organization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043495 "protein anchor" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043534 "blood vessel endothelial cell migration" evidence=IEA

GO:0051295 "establishment of meiotic spindle localization" evidence=IEA

UNIPROTKB|F1MYN2 CGN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 198 (74.8 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 100/435 (22%), Positives = 180/435 (41%)

Query:    36 DKEQKFGAEKMVGTAN-NARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEA 94
             +K+ +  AE+  G    N ++++    +   QD   +S     A +E   +   R  VE 
Sbjct:   657 EKQLRVEAERSRGLEEQNLQLQKTLQQLR--QDCEEASKAQMAAETEAAVLGQRRTAVET 714

Query:    95 LLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKC 154
              L E     ++F  + R   +   +K  R         EG    E  RLR+ ++  E + 
Sbjct:   715 TLRETQEENDEF--RRRILGLEQQLKEARGLA------EGGEVAE-ARLRDKVQRLEAEK 765

Query:   155 AEMELALRNKEEELNLIIVELRKSFASLQEK---LAKEESDKLAALDSLAREKETRLNME 211
               ++ AL   +EE   +    R   A L+E    L +   ++ A   +L  E + R  + 
Sbjct:   766 QRLQEALNAAQEEEGSLAAAKRALEARLEEAQRGLTRLGQEQQALNRALEEEGKQREVLR 825

Query:   212 RSHASLSEDLGKAQEELQSANQRIASINDMYK-LLQEYNSSLQHYNTKLQKDIDAAHESI 270
             RS A L E        +   N+ +  I D  K  LQ+  + L+ Y  K ++++  A    
Sbjct:   826 RSKAELEEQKRLLDRTVDRLNKELEQIGDDSKQALQQLQAQLEDYKEKARREVADAQRQA 885

Query:   271 KRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR 330
             K    E       LS L+ +   L++ L   +A +D A   K+ LV  +  +  E +  +
Sbjct:   886 KEWASEAEKTSGGLSRLQDETQRLRQALQASQADRDTARLDKELLVQRLQGLEQEAENKK 945

Query:   331 ---DDRDHQLS----QVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEE 383
                DD+  QL     +V  L AE+ + K       D   R   Q +Q+R+   Q  +A +
Sbjct:   946 RSQDDKSRQLKSLEEKVSRLEAELDEEKSTVELLTDRMNRGRDQVDQLRTELMQERSARQ 1005

Query:   384 KLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGE--KLRKRLHNTILELEVNL 441
              LE   +S LE + + + + +L +        A    +E +  +L++RL     E  V  
Sbjct:  1006 DLECDKIS-LERQNK-DLKSRLASSEGFQKPSASLSQLESQNRELQERLQAEEREKTVLQ 1063

Query:   442 SSSALFRRGLKDIDV 456
             S++    R +K++ +
Sbjct:  1064 STNRKLERRVKELSI 1078

GO:0043296 "apical junction complex" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|H0Y6I0 GOLGA4 "Golgin subfamily A member 4" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 82/383 (21%), Positives = 187/383 (48%)

Query:    85 IEFTREDVEALLSEKMR-----YKNKFN-YKERCENMMD-YIKRLRLCIKWFQELEGDYA 137
             +E  +   +AL +EK++     Y+ +    +E+CE   +  +K   +  +   E   +  
Sbjct:   487 LESLKHQQDALWTEKLQVLKQQYQTEMEKLREKCEQEKETLLKDKEIIFQAHIEEMNEKT 546

Query:   138 FEHERLRNA-LELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAA 196
              E   ++   LE    + +E+  A    EEEL+++  +  K    L+ K+ ++++     
Sbjct:   547 LEKLDVKQTELESLSSELSEVLKARHKLEEELSVLKDQTDKMKQELEAKMDEQKNHHQQQ 606

Query:   197 LDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRI----ASINDMYKLLQEYNSSL 252
             +DS+ +E E  ++++R+  +L + + + +  L+  ++ +    A + ++   ++     L
Sbjct:   607 VDSIIKEHE--VSIQRTEKALKDQINQLELLLKERDKHLKEHQAHVENLEADIKRSEGEL 664

Query:   253 QHYNTKL---QKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAM 309
             Q  + KL   Q    A HE  K  E++ + + + L  L  + I L +Q++  +A + +  
Sbjct:   665 QQASAKLDVFQSYQSATHEQTKAYEEQLAQLQQKLLDLETERILLTKQVAEVEAQKKDVC 724

Query:   310 RQKDALVHEVASMRVELQQVRDDRDHQL--------SQVQALTAEVIKHKELAVSSED-- 359
              + DA   +V  +  +L++   + + ++        S+++    E  + K++ V  E+  
Sbjct:   725 TELDAHKIQVQDLMQQLEKQNSEMEQKVKSLTQVYESKLEDGNKEQEQTKQILVEKENMI 784

Query:   360 LEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEY- 418
             L+ R   Q  +I  L+ +L+A E+ + +  L+  E +T+F+ Q+K + +++   ++ +  
Sbjct:   785 LQMR-EGQKKEIEILTQKLSAKEDSIHI--LNE-EYETKFKNQEKKMEKVKQKAKEMQET 840

Query:   419 ---KLIEGE-KLRKRLHNTILEL 437
                KL++ E KL+K L NT LEL
Sbjct:   841 LKKKLLDQEAKLKKELENTALEL 863

GO:0000042 "protein targeting to Golgi" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	461
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-11
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
PRK09039	343	PRK09039, PRK09039, hypothetical protein; Validate	2e-05
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	6e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	8e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 70/335 (20%), Positives = 133/335 (39%), Gaps = 41/335 (12%)

Query: 134 GDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIV------------ELRKSFAS 181
            D   E ER   +LE  + + AE    L+ +  EL L ++            EL++    
Sbjct: 192 EDILNELERQLKSLER-QAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKE 250

Query: 182 LQEKLAKEESDKLAALDSLAREKETRLNMERS-HASLSEDLGKAQEELQSANQRIASIND 240
            +E        +L  L +  +E E +L   R   + L E++ + Q+EL +    I+ +  
Sbjct: 251 AEE--------ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ 302

Query: 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST 300
             ++L+E  ++L+    +L+  ++     +    +E + + E L  L+ +  SL+ +L  
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362

Query: 301 YKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDL 360
            +A  +E   + + L         +L+ +R        Q+ +L  E+     L    E L
Sbjct: 363 LEAELEELESRLEEL-------EEQLETLRSKVAQLELQIASLNNEIE---RLEARLERL 412

Query: 361 EARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKL 420
           E R      +I  L  +L  AE K         E + E E  ++ + EL+  LE  E  L
Sbjct: 413 EDRRERLQQEIEELLKKLEEAELK---------ELQAELEELEEELEELQEELERLEEAL 463

Query: 421 IEGEKLRKRLHNTILELEVNLSSSALFRRGLKDID 455
            E  +  +     +   E  L+        L+ + 
Sbjct: 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 64/281 (22%), Positives = 129/281 (45%), Gaps = 6/281 (2%)

Query: 158 ELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASL 217
            LA + + +EL   + EL      L+E+L   +++  +  D L   +     +ER    L
Sbjct: 662 SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEEL 721

Query: 218 SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEK 277
             +L   +EEL+    R+  + +  + L+E    LQ    +L++++++  E++ + ++E 
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781

Query: 278 SAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL 337
             + E    L+ +   L+E+L   +   D   R+ ++L      +  E++++ ++ +   
Sbjct: 782 EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELE 841

Query: 338 SQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKT 397
            ++  L  E+   +EL    E+L+        +   L D+L   EE+ E  +    E ++
Sbjct: 842 EKLDELEEEL---EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898

Query: 398 EFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELE 438
           E    K+ I +LR  LE+ E KL   E+L   L     ELE
Sbjct: 899 ELAELKEEIEKLRERLEELEAKL---ERLEVELPELEEELE 936

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 64/307 (20%), Positives = 125/307 (40%), Gaps = 34/307 (11%)

Query: 139  EHERLRNALELSEQKCAEMELALRNKEEELNLI-----IVELRKSFASLQEKLAKEESDK 193
            E    + + EL+E +    EL  R +E E  L      I EL      L+E+L       
Sbjct: 746  EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805

Query: 194  LAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQ 253
                  L    E   N+     SL   +   +  L+   ++I         L E   SL 
Sbjct: 806  DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE-------LSEDIESLA 858

Query: 254  HYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKD 313
                +L++ I+     ++    E++++ E L+ LR +   L E+L   ++ + E  R+ +
Sbjct: 859  AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918

Query: 314  ALVHEVASMRVELQQVRDDRDHQLSQV---QALTAEVIKHKELAVSSEDLEARCASQSNQ 370
             L  ++A + + L+ +    D+   ++    +LT E  +  E  +  ++ EAR      +
Sbjct: 919  ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR-----RR 973

Query: 371  IRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRL 430
            ++ L +++      L   +L+A+E   E+E  K+  + L    ED         + ++ L
Sbjct: 974  LKRLENKIKE----LGPVNLAAIE---EYEELKERYDFLTAQKEDL-------TEAKETL 1019

Query: 431  HNTILEL 437
               I E+
Sbjct: 1020 EEAIEEI 1026

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.7 bits (150), Expect = 5e-10
 Identities = 75/321 (23%), Positives = 153/321 (47%), Gaps = 19/321 (5%)

Query: 139  EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALD 198
            + E L+  L   E++  +++  L   EEEL     EL +    LQE+L + E +  +  +
Sbjct: 717  QLEELKRELAALEEELEQLQSRLEELEEELE----ELEEELEELQERLEELEEELESLEE 772

Query: 199  SLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYK-------LLQEYNSS 251
            +LA+ KE    +E    +L E+L + +EEL+ A +R+ ++    +        L++    
Sbjct: 773  ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEE 832

Query: 252  LQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQ 311
            L+    +L++ +D   E ++  EKE   + E L  L  +   L+++L   +  ++E   +
Sbjct: 833  LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEE 892

Query: 312  KDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI 371
               L  E+A ++ E++++R+  +   ++++ L  EV   +      E+ E    +   ++
Sbjct: 893  LRELESELAELKEEIEKLRERLEELEAKLERL--EVELPELEEELEEEYED---TLETEL 947

Query: 372  RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEG-EKLRKRL 430
                ++L    E L   +L A+E   E E + + +   R  LE+A+ KL+E  E+L K  
Sbjct: 948  EREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007

Query: 431  HNTILEL--EVNLSSSALFRR 449
                 E   ++N + S +F+ 
Sbjct: 1008 RERFKETFDKINENFSEIFKE 1028

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.3 bits (149), Expect = 7e-10
 Identities = 62/318 (19%), Positives = 137/318 (43%), Gaps = 13/318 (4%)

Query: 139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALD 198
           E   L   LE  E++   ++  LR+ E+ L     ELR+    L+ +L + + +  A  +
Sbjct: 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLE----ELRRQLEELERQLEELKRELAALEE 730

Query: 199 SLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTK 258
            L + +     +E     L E+L + QE L+   + + S+ +    L+E    L+     
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790

Query: 259 LQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHE 318
           LQ++++   E ++  E+   A+   L +L  +   L++++   +   +E   + D L  E
Sbjct: 791 LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850

Query: 319 VASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQL 378
           +  +  EL++++++ +   ++ + L  E+ + +E     E+LE       +++  L +++
Sbjct: 851 LEELEKELEELKEELEELEAEKEELEDELKELEEEK---EELEEELRELESELAELKEEI 907

Query: 379 AAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELE 438
               E+LE             E +   + E      +   +  E E+  +RL   I  L 
Sbjct: 908 EKLRERLE----ELEAKLERLEVELPELEEELEEEYEDTLE-TELEREIERLEEEIEALG 962

Query: 439 -VNLSSSALFRRGLKDID 455
            VNL +   +    +  +
Sbjct: 963 PVNLRAIEEYEEVEERYE 980

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 62/299 (20%), Positives = 121/299 (40%), Gaps = 19/299 (6%)

Query: 164 KEEELNLIIVELRKSFASLQEKLAKEE------------------SDKLAALDSLAREKE 205
             E L  ++ EL K    L+ +  K E                  +        L   +E
Sbjct: 187 NLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEE 246

Query: 206 TRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDA 265
               +E     L E+L +A++E++     +  + +  + LQE    L+    +L+ +I  
Sbjct: 247 ELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISL 306

Query: 266 AHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVE 325
             E ++  E E   + E L  L+ +  +L+E+L   +   +E  +    L      +  +
Sbjct: 307 LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEK 366

Query: 326 LQQVRDDRDHQLSQVQALTAEVIKHK-ELAVSSEDLEARCASQSNQIRSLSDQLAAAEEK 384
           L  + ++ +     ++   AE+     E+    E+L+    S   ++  LS++L   +E+
Sbjct: 367 LSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEE 426

Query: 385 LEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSS 443
           L+  +    E +TE E   + + EL   LE+   +L E E+    L   +  LE  LSS
Sbjct: 427 LKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSS 485

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.0 bits (143), Expect = 3e-09
 Identities = 51/261 (19%), Positives = 116/261 (44%), Gaps = 4/261 (1%)

Query: 182 LQEKLAKEESDKLAALDSLAREKETRLN-MERSHASLSEDLGKAQEELQSANQRIASIND 240
            Q++  KE  ++LA L++   + E  L  ++    SL + L + + +L+   +++  +  
Sbjct: 664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723

Query: 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST 300
               L+E    LQ    +L+++++   E ++  ++    + E L +L      L+E++  
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 301 YKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDL 360
            +  +     + + L  E+      L  +  + +    + + L  E+   +EL    E+L
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI---EELEEEIEEL 840

Query: 361 EARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKL 420
           E +      ++  L  +L   +E+LE  +    E + E +  ++   EL   L + E +L
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900

Query: 421 IEGEKLRKRLHNTILELEVNL 441
            E ++  ++L   + ELE  L
Sbjct: 901 AELKEEIEKLRERLEELEAKL 921

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.9 bits (143), Expect = 4e-09
 Identities = 58/300 (19%), Positives = 124/300 (41%), Gaps = 35/300 (11%)

Query: 144 RNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLARE 203
           R  +E  E+K  E+E  +   E+ L     ELRK    L+E+L +   +           
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALA----ELRKELEELEEELEQLRKELEE-------- 723

Query: 204 KETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDI 263
                 + R  ++L +DL + + E++   +RIA ++     L+     L+    + ++++
Sbjct: 724 ------LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777

Query: 264 DAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMR 323
             A   I+  E +   + E L  LR     L+ +L+           + ++L   +A+  
Sbjct: 778 AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837

Query: 324 VELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEE 383
             L+ + +  +     +++L AE+          E+LE       +++ +L ++ A+ EE
Sbjct: 838 RRLEDLEEQIEELSEDIESLAAEI----------EELEELIEELESELEALLNERASLEE 887

Query: 384 KLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSS 443
            L          ++E E   + + EL +   +   +L E  +   +L   +  LEV + +
Sbjct: 888 ALA-------LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.1 bits (141), Expect = 6e-09
 Identities = 73/312 (23%), Positives = 136/312 (43%), Gaps = 34/312 (10%)

Query: 139 EHERLRNALELSEQKCAEMELAL----------RNKEEELNLIIVELRKSFASLQEKLAK 188
           E E L   +E  E+K AE+E AL            + E+L   + EL +  ++L++ LA+
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737

Query: 189 EESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSA-------NQRIASINDM 241
            E++     + +A+  +    +E     L E L +A+EEL  A         +I  + + 
Sbjct: 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797

Query: 242 YKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSA-------IVENLSTLRGQYISL 294
            K L+E    L+   T L ++     E ++  E+  +A       + E +  L     SL
Sbjct: 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857

Query: 295 QEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIK----H 350
             ++   +   +E   + +AL++E AS+   L  +R + +    +++ L ++  +     
Sbjct: 858 AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917

Query: 351 KELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELR 410
           +EL      LE R      +I +L ++L + E  L + +  ALE K E +       E R
Sbjct: 918 EELREKLAQLELRLEGLEVRIDNLQERL-SEEYSLTLEEAEALENKIEDD-----EEEAR 971

Query: 411 NHLEDAEYKLIE 422
             L+  E K+ E
Sbjct: 972 RRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 55/258 (21%), Positives = 104/258 (40%), Gaps = 16/258 (6%)

Query: 187 AKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ 246
           ++ +   LA    L   +E    +E     L E+L   + EL+S    +  +    + L+
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELE 715

Query: 247 EYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQD 306
                       L++++ A  E +++ +     + E L  L  +   LQE+L   +   +
Sbjct: 716 RQLEE-------LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELE 768

Query: 307 EAMRQKDALVHEVASM---RVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEAR 363
                   L  E+  +   R  LQ+  ++ + +L + +           L    E LE R
Sbjct: 769 SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD------ALERELESLEQR 822

Query: 364 CASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEG 423
                 +I  L +++   EEKL+  +    E + E E  K+ + EL    E+ E +L E 
Sbjct: 823 RERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL 882

Query: 424 EKLRKRLHNTILELEVNL 441
           E+ ++ L   + ELE  L
Sbjct: 883 EEEKEELEEELRELESEL 900

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 54/260 (20%), Positives = 104/260 (40%), Gaps = 20/260 (7%)

Query: 129 FQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAK 188
            QE   +   E E L   L+  E+K  E+ L +   EEE+     EL+K   +L  ++++
Sbjct: 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIE----ELQKELYALANEISR 299

Query: 189 EESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEY 248
            E  K    + LA  +     +E     L   L +  EEL    +++        L +E 
Sbjct: 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE------LKEEL 353

Query: 249 NSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA 308
            S        L+ +++     ++  E     + E L TLR +   L+ Q+++     +  
Sbjct: 354 ES--------LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405

Query: 309 MRQKDALVHEVASMRVELQQVRDDRD-HQLSQVQALTAEVIKHKELAVSS-EDLEARCAS 366
             + + L      ++ E++++    +  +L ++QA   E+ +  E      E LE     
Sbjct: 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEE 465

Query: 367 QSNQIRSLSDQLAAAEEKLE 386
              ++      L AAE +L 
Sbjct: 466 LREELEEAEQALDAAERELA 485

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 33/209 (15%)

Query: 217 LSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKE 276
           LS ++      L   N +IA + D+  L ++ N  LQ     L+  + AA     R +  
Sbjct: 44  LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103

Query: 277 KSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQ 336
            + +    +   G+   L ++L + K     A+ Q + L  ++A++R +L  +       
Sbjct: 104 LAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEA----- 158

Query: 337 LSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETK 396
                AL A               E R      +I  L  +L  A  +  V +L+    +
Sbjct: 159 -----ALDAS--------------EKRDRESQAKIADLGRRLNVALAQ-RVQELN--RYR 196

Query: 397 TEFEGQKKLINELRNHLEDAEYKLIEGEK 425
           +EF G+      LR  L D E   I G++
Sbjct: 197 SEFFGR------LREILGDREGIRIVGDR 219

Length = 343

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 74/329 (22%), Positives = 121/329 (36%), Gaps = 43/329 (13%)

Query: 121 RLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFA 180
           RL+  IK  ++LE D    +ERL    E  +++ A +E  L+  E +L   +   +  F 
Sbjct: 384 RLKQKIK--EQLERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFN 441

Query: 181 SLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIND 240
             + +L          LDS     E    +E +     E L KAQEE + A         
Sbjct: 442 EEEYELELRLGRLKQRLDSATATPEELEQLEIN----DEALEKAQEEQEQAEAN------ 491

Query: 241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST 300
                      LQ    +L+K  D A E+++R E+        L  LR     L+ QLS 
Sbjct: 492 --------VEQLQSELRQLRKRRDEALEALQRAERR-------LLQLRQALDELELQLSP 536

Query: 301 YKASQDEAMRQKDALVHE-VASMRVELQQVRDDRDHQLSQVQA--------LTAEVIKHK 351
              S    +R +     E +  +       R D D QL +           L  + +   
Sbjct: 537 QAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLDVP 596

Query: 352 ELAVSSEDLEARCA-------SQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK 404
           + A +  +L  R         S   + +   +QL  A  +LE    +  E +T  +  + 
Sbjct: 597 DYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARL 656

Query: 405 LINELRNHLEDAEYKLIEGEKLRKRLHNT 433
            +  L+N  +  + KL      RK+   T
Sbjct: 657 DLQRLQNEQQSLKDKLELAIAERKQQAET 685

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 68/323 (21%), Positives = 135/323 (41%), Gaps = 38/323 (11%)

Query: 134 GDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKS--FASLQEKLAK-EE 190
            ++  + E+    LE  E+    ++L +  K ++L  +  E  K+  + +L ++  + E 
Sbjct: 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEG 225

Query: 191 SDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNS 250
            + L   ++L R+KE    +ER  ASL E+L K  EE+    +R+  I            
Sbjct: 226 YELLKEKEALERQKE---AIERQLASLEEELEKLTEEISELEKRLEEIEQ---------- 272

Query: 251 SLQHYNTKLQKDIDAAHESIKR-GEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAM 309
                       ++  ++ IK  GE+E+  + E +  L  +  SL+  ++  +   ++A 
Sbjct: 273 -----------LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321

Query: 310 RQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSN 369
            +   L  E+  +  E++++  + + +  +   LT E     EL    EDL A       
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY---AELKEELEDLRAELEEVDK 378

Query: 370 QIRSLSDQLAAAEEKL-----EVSDLSALETKTEFEGQKKLIN--ELRNHLEDAEYKLIE 422
           +     D+L    EKL     E+++L     + + E Q+      +L   +   E K+ E
Sbjct: 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438

Query: 423 GEKLRKRLHNTILELEVNLSSSA 445
            E+ ++     I + E  L   A
Sbjct: 439 LEEEKEDKALEIKKQEWKLEQLA 461

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 68/306 (22%), Positives = 127/306 (41%), Gaps = 20/306 (6%)

Query: 139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLA--A 196
           EHE  R  LE  E +  ++   +   E E   +  E+R     L+E L +E  D LA   
Sbjct: 245 EHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE-LEEERDDLLAEAG 303

Query: 197 LDSLARE--KETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQH 254
           LD    E  +  R  +E     L + L + +   Q+ N+   S+ +    L+E    L+ 
Sbjct: 304 LDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE 363

Query: 255 YNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDA 314
              +L+ +++ A E+++   +E   + E +  LR ++      L   +   +E   ++D 
Sbjct: 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE 423

Query: 315 LVHEVASMRVELQQVRDDRDHQLSQVQALTAE--------VIKHKELAVSSEDLEARCAS 366
           L    A +   L+  R+     + + +AL            ++      + E+   R   
Sbjct: 424 LREREAELEATLRTARER----VEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEE 479

Query: 367 QSNQIRSLSDQLAAAEEKLE-VSDLSALETKTE-FEGQKKLINELR-NHLEDAEYKLIEG 423
              ++  L +++   EE+LE   DL   E + E  E +++ + EL     E  E K    
Sbjct: 480 LEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERA 539

Query: 424 EKLRKR 429
           E+LR+R
Sbjct: 540 EELRER 545

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 38/226 (16%), Positives = 83/226 (36%), Gaps = 9/226 (3%)

Query: 226 EELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLS 285
            ELQ   +R+  +      LQ     +++   +L +++  A   I   EKE   + +   
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733

Query: 286 TLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR--------DDRDHQL 337
            L+ +   L+E LS+ +   +    +   L   +  +  +L ++              ++
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793

Query: 338 SQVQALTAEVIK-HKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETK 396
            ++QA  +++ +    +     ++E +    + +   L  ++   +E+           +
Sbjct: 794 PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853

Query: 397 TEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLS 442
            E E       EL   LE+ E  L + E     L     ELE  L 
Sbjct: 854 KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 58/264 (21%), Positives = 103/264 (39%), Gaps = 20/264 (7%)

Query: 180 ASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN 239
           A ++EK  K+  ++L  L+S     E    +ER      E   +A+E    A++ +    
Sbjct: 194 AQIEEKEEKDLHERLNGLES--ELAELDEEIER----YEEQREQARETRDEADEVLE--- 244

Query: 240 DMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLS 299
                  E+    +   T L+ +I+   E+I   E+E+  + E +  LR +   L+E+  
Sbjct: 245 -------EHEERREELET-LEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERD 296

Query: 300 TYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSED 359
              A         +A+      +    +++RD  +      QA   E    + L   ++D
Sbjct: 297 DLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEA---ESLREDADD 353

Query: 360 LEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYK 419
           LE R      +   L  +L  A E +E       E + E E  ++   +    L +AE  
Sbjct: 354 LEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF 413

Query: 420 LIEGEKLRKRLHNTILELEVNLSS 443
           L E  + R  L     ELE  L +
Sbjct: 414 LEELREERDELREREAELEATLRT 437

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 3/224 (1%)

Query: 207 RLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAA 266
            L   R    L E + + +E++    + +A +    + L+E    L+    +L + I A 
Sbjct: 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731

Query: 267 HESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVEL 326
            + + R E E   + E ++ L  +   L+ ++   +   +EA  +      E+  +  ++
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 327 QQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE 386
           +Q++++       +  L AE      L   + +L  R  S   +I +   +L   EE++E
Sbjct: 792 EQLKEELKALREALDELRAE---LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

Query: 387 VSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRL 430
                      E E  ++LI EL + LE    +    E+    L
Sbjct: 849 ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 52/292 (17%), Positives = 126/292 (43%), Gaps = 12/292 (4%)

Query: 97  SEKMRYKNKFNYKERCENMMDYIKRLRLCIKW--FQELEGDYAFEHERLRNALELSEQKC 154
            +  RY+         E  +   K   L  +    +E       E E L+  LE +E++ 
Sbjct: 210 EKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEI 269

Query: 155 AEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSH 214
            E++  L    EEL     EL++    L+E++ + E +     + L   +     +E   
Sbjct: 270 EELKSELEELREELE----ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERL 325

Query: 215 ASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGE 274
             L E +   +EEL+     +  +  +   L+E    L+   + L ++++   E+++   
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR--- 382

Query: 275 KEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRD 334
           +E + +   L+ +R +   L+ ++ + +   +    + + L  E+  +  EL++++ + +
Sbjct: 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELE 442

Query: 335 HQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE 386
               +++ L     + +EL    ++LE   A    +++ L  +L++ E +L+
Sbjct: 443 ELNEELEELEE---QLEELRDRLKELERELAELQEELQRLEKELSSLEARLD 491

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 48/285 (16%), Positives = 114/285 (40%), Gaps = 28/285 (9%)

Query: 159 LALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLS 218
            +   + + L   +  L++  +SLQ +L + E+        L+          R    + 
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDA-------SRKIGEIE 722

Query: 219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKS 278
           +++ + ++E +   +R+                L+   + L+++I+     +K  E    
Sbjct: 723 KEIEQLEQEEEKLKERLEE--------------LEEDLSSLEQEIENVKSELKELEARIE 768

Query: 279 AIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLS 338
            + E+L  L      L+ +LS         + +  A + ++      ++    + + +L+
Sbjct: 769 ELEEDLHKLEEALNDLEARLS------HSRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822

Query: 339 QVQALTAEVIKH-KELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKT 397
           ++      + K  +EL     DL+ +  S   +I +L+ +    EE+LE  + +  + ++
Sbjct: 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882

Query: 398 EFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLS 442
                KK  +EL   L + E K+ E E   ++    + EL+  L 
Sbjct: 883 RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLE 927

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 41/210 (19%), Positives = 86/210 (40%), Gaps = 9/210 (4%)

Query: 219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKS 278
           E   +A+ +L+   + +  + D   LL+E    L+    + +K         +  E E +
Sbjct: 172 ERKEEAERKLERTEENLERLED---LLEELEKQLEKLERQAEKAERYQELKAELRELELA 228

Query: 279 AIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLS 338
            ++  L  LR +   L+E+LS  +   +E   + +    E+  ++ EL+++R++ +    
Sbjct: 229 LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE---E 285

Query: 339 QVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSD---LSALET 395
             + L     + +EL      L  R     N++  L ++L   +EK+E            
Sbjct: 286 LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETL 345

Query: 396 KTEFEGQKKLINELRNHLEDAEYKLIEGEK 425
             E E     + E +  LE+    L+E  +
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEELE 375

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 31/210 (14%), Positives = 81/210 (38%), Gaps = 4/210 (1%)

Query: 139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALD 198
           E   L  ++   E++  + E  L   E E++    +L      L+ ++ +E   +    +
Sbjct: 302 EIASLERSIAEKERELEDAEERLAKLEAEID----KLLAEIEELEREIEEERKRRDKLTE 357

Query: 199 SLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTK 258
             A  KE   ++      + ++  + ++EL+   +++  +      L+     LQ    +
Sbjct: 358 EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417

Query: 259 LQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHE 318
           L +++   + +I   E + + + E       +    + +L    A   +  ++   L  E
Sbjct: 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477

Query: 319 VASMRVELQQVRDDRDHQLSQVQALTAEVI 348
              +  EL +++ +     +Q +A    V 
Sbjct: 478 YDRVEKELSKLQRELAEAEAQARASEERVR 507

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 80/335 (23%), Positives = 145/335 (43%), Gaps = 48/335 (14%)

Query: 150 SEQKCAEMELALRNKEEELNLI---IVELRKSFASLQEKLAKEESDKLAALDSLAREKET 206
            E++  E+E  L  KE EL+ +   + + +   A LQ+K+ + E+      + L  E+  
Sbjct: 2   LERQKRELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERAA 61

Query: 207 RLNMERSHASLSEDLGKAQEELQSAN-----------QRIASINDMYKLLQEYNSSLQHY 255
           R   E++ A LS +L +  E L+ A            +R A +  + K L+E  ++LQH 
Sbjct: 62  RAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLEE--ANLQHE 119

Query: 256 NT-------------KLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS--------- 293
                          +L + I+   +   + EKEKS +   +  L  Q            
Sbjct: 120 EALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIAKAKLNAE 179

Query: 294 -----LQEQLSTYKASQDEAMRQKDALVHEVASMRVE---LQQVRDDRDHQLSQVQALTA 345
                L+ QLS  +   DE  RQ + L  + + ++ E   L +  ++ + Q+S +  L +
Sbjct: 180 KKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKS 239

Query: 346 EVIKHKELAVSSEDLEARCASQ-SNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK 404
           ++    E A  S + E+R  +    Q+R L   L +  E+LE    +  E + +      
Sbjct: 240 QLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANA 299

Query: 405 LINELRNHLE-DAEYKLIEGEKLRKRLHNTILELE 438
            I + R+  E +   +  E E+L+K+L+  I ELE
Sbjct: 300 EIQQWRSKFESEGALRAEELEELKKKLNQKISELE 334

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	461
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	99.96
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	99.92
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.04
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.01
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.0
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.92
PRK03918	880	chromosome segregation protein; Provisional	98.82
PRK02224	880	chromosome segregation protein; Provisional	98.77
PRK02224	880	chromosome segregation protein; Provisional	98.73
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.68
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.51
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.48
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.45
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.43
PRK03918	880	chromosome segregation protein; Provisional	98.42
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.41
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.27
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	98.2
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.14
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.13
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.08
PRK04778	569	septation ring formation regulator EzrA; Provision	98.04
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.0
PRK11637	428	AmiB activator; Provisional	97.9
PRK11637	428	AmiB activator; Provisional	97.89
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.84
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.84
PRK09039	343	hypothetical protein; Validated	97.77
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.77
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.73
PHA02562	562	46 endonuclease subunit; Provisional	97.73
PRK04778	569	septation ring formation regulator EzrA; Provision	97.72
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.68
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.63
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.6
PHA02562	562	46 endonuclease subunit; Provisional	97.58
PRK10929	1109	putative mechanosensitive channel protein; Provisi	97.44
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.37
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.35
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.31
PRK01156	895	chromosome segregation protein; Provisional	97.06
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.99
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.97
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.89
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.86
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.83
PRK01156	895	chromosome segregation protein; Provisional	96.83
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.81
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.78
KOG0971	1243	consensus Microtubule-associated protein dynactin	96.75
KOG0249	916	consensus LAR-interacting protein and related prot	96.74
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.72
PRK04863	1486	mukB cell division protein MukB; Provisional	96.63
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.59
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.53
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	96.51
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.46
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	96.45
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.37
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.15
PRK11281	1113	hypothetical protein; Provisional	96.14
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.11
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.11
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.08
COG4477	570	EzrA Negative regulator of septation ring formatio	96.08
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.08
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.05
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.05
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	96.02
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	96.0
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	95.91
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.91
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.63
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.56
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.52
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.37
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.37
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	95.28
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	95.21
PRK09039	343	hypothetical protein; Validated	95.19
PF13949	296	ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HI	95.15
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	95.14
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.09
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	95.08
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.04
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.02
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.98
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.96
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.87
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.81
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.59
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	94.47
PRK11281	1113	hypothetical protein; Provisional	94.45
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.39
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.33
PRK10361	475	DNA recombination protein RmuC; Provisional	94.01
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	94.0
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	93.89
PF10186	302	Atg14: UV radiation resistance protein and autopha	93.63
PF14662	193	CCDC155: Coiled-coil region of CCDC155	93.48
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	93.43
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	93.33
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	93.26
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.2
KOG0964	1200	consensus Structural maintenance of chromosome pro	93.16
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	92.98
PF10186	302	Atg14: UV radiation resistance protein and autopha	92.97
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	92.89
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	92.82
KOG0933	1174	consensus Structural maintenance of chromosome pro	92.68
PLN02939	977	transferase, transferring glycosyl groups	92.67
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	92.5
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	92.4
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	92.33
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	91.91
PRK10246	1047	exonuclease subunit SbcC; Provisional	91.49
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	91.35
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	91.29
KOG0249	916	consensus LAR-interacting protein and related prot	91.17
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	90.82
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	90.64
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	90.57
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	90.21
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	90.12
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	90.08
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	90.05
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	89.95
PRK04863	1486	mukB cell division protein MukB; Provisional	89.85
PRK10246	1047	exonuclease subunit SbcC; Provisional	89.7
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	89.59
KOG4673	961	consensus Transcription factor TMF, TATA element m	89.54
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.35
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	89.29
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	89.18
cd07671	242	F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin	89.15
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	89.14
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.08
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	89.06
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	88.29
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	88.26
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	88.25
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	88.16
PF13514	1111	AAA_27: AAA domain	88.07
KOG0240	607	consensus Kinesin (SMY1 subfamily) [Cytoskeleton]	88.01
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	87.73
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	87.61
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	87.52
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.42
KOG0971	1243	consensus Microtubule-associated protein dynactin	87.3
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	87.08
KOG0963	629	consensus Transcription factor/CCAAT displacement	86.92
PF15294	278	Leu_zip: Leucine zipper	86.85
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	86.64
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	86.53
KOG4673	961	consensus Transcription factor TMF, TATA element m	86.17
PF10191	766	COG7: Golgi complex component 7 (COG7); InterPro:	85.89
PF13166	712	AAA_13: AAA domain	85.7
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	85.58
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	85.45
COG4942	420	Membrane-bound metallopeptidase [Cell division and	85.33
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	85.3
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	84.66
PF13514	1111	AAA_27: AAA domain	84.63
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	84.32
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	84.07
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	84.04
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	83.96
PRK10884	206	SH3 domain-containing protein; Provisional	83.92
PF05791	184	Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL	83.63
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	83.58
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	83.32
KOG0979	1072	consensus Structural maintenance of chromosome pro	83.04
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	82.71
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	82.67
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	82.55
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	82.16
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	82.06
PF13166	712	AAA_13: AAA domain	81.67
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	81.26
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	81.17
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	80.7
COG4372	499	Uncharacterized protein conserved in bacteria with	80.66

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=99.96  E-value=7.3e-29  Score=263.63  Aligned_cols=283  Identities=20%  Similarity=0.204  Sum_probs=260.1

Q ss_pred             HHHHHHHHHHHHHH-------HhHHHhhHHHHHHhhHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHH
Q 012561          172 IVELRKSFASLQEK-------LAKEESDKLAALDSLAREKE--TRLNMERSHASLSEDLGKAQEELQSANQRIASINDMY  242 (461)
Q Consensus       172 i~ELr~~~~SLqe~-------L~keeseKl~a~~s~~kEkE--aR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmy  242 (461)
                      +..++..+.+.+..       +.++.....++++.+..+..  +.........++..++.+.+.+.......+.++.+++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (670)
T KOG0239|consen   23 NPKKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVKAGLTYTMEGSNQPGGLLARLFKELIDLANSDKTSNVVEAYN  102 (670)
T ss_pred             ccccccCccccccccccccccCCccccchhhhhhhhhcchhhhhhhhhhcCcchhHHHhhhhcccccccCCCchhHHHHH
Confidence            34455555555554       66777788888888888755  6777788888999999999999988888888999999


Q ss_pred             HHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHH--HhHhhHH---HHHHhhHHHHH
Q 012561          243 KLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLS--TYKASQD---EAMRQKDALVH  317 (461)
Q Consensus       243 KRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~--~skaSq~---Ea~kQK~~L~~  317 (461)
                      .++..|++++|+|++++..++....+.+++.+..+.++...+.+|+.++..+...+.  ..+.+++   .+.++++.+.+
T Consensus       103 ~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~  182 (670)
T KOG0239|consen  103 ERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKESLKLES  182 (670)
T ss_pred             HHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999998  7888888   99999999999


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhch
Q 012561          318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDL  390 (461)
Q Consensus       318 Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDl  390 (461)
                      |+..+..+|..|+++.++...+...+..+...+.+       +..++..|+..|+++.+.|..|+++|...+.++...+-
T Consensus       183 ~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~  262 (670)
T KOG0239|consen  183 DLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELND  262 (670)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999997777776666       78889999999999999999999999999999999999


Q ss_pred             hhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhH---HhHHhhhhhhhhhcccceeeeeeccCCCCC
Q 012561          391 SALETKTEFEGQKKLINELRNHLEDAEYKLIEGE---KLRKRLHNTILELEVNLSSSALFRRGLKDI  454 (461)
Q Consensus       391 sa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGE---kLRKKLHNTILELKGNIRv~crvrp~l~~~  454 (461)
                      ...+.+.+|+++.+.+..++..|++++..+++..   .+||+|||+|+||||||||||||||++|+-
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e  329 (670)
T KOG0239|consen  263 QVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLPSE  329 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCccc
Confidence            9999999999999999999999999999999999   999999999999999999999999999864

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=99.92  E-value=7.7e-23  Score=217.43  Aligned_cols=288  Identities=26%  Similarity=0.329  Sum_probs=263.9

Q ss_pred             HHHHHHHHhhhhhHH---------HHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Q 012561          124 LCIKWFQELEGDYAF---------EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKL  194 (461)
Q Consensus       124 ~CIrWfqelE~~y~~---------EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl  194 (461)
                      .+|=-+|+-|.+.-.         .-.|.+.-|..-+.|+-.+.++||.++.+++..+..|+.+|+|||+.+.+...++-
T Consensus       276 t~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqa  355 (739)
T PF07111_consen  276 TDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQA  355 (739)
T ss_pred             HHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466677887766544         37899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhh-
Q 012561          195 AALDSLAREKETRLNMERSHA-SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKR-  272 (461)
Q Consensus       195 ~a~~s~~kEkEaR~~~E~~~~-~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r-  272 (461)
                      .+..|+ .+|+|+..+|++++ +|..||.+++.+...+++|+.+.++.+|.+.+|-+|.|++   |++-..++..+.+| 
T Consensus       356 iLq~SL-qDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S~q~~---L~s~ma~ve~a~aRL  431 (739)
T PF07111_consen  356 ILQHSL-QDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSSSQQW---LESQMAKVEQALARL  431 (739)
T ss_pred             HHHHHH-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            999999 99999999999999 7999999999999999999999999999999999999995   88888887776555 


Q ss_pred             --hhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 012561          273 --GEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKH  350 (461)
Q Consensus       273 --~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~y  350 (461)
                        +....+..+.++.+++|       +++-..|+...+..++..+--++..|+.||||+|++|||..++++ |++.+...
T Consensus       432 ~sL~~RlSyAvrrv~tiqG-------L~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLq-lSa~liqq  503 (739)
T PF07111_consen  432 PSLSNRLSYAVRRVHTIQG-------LMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQ-LSARLIQQ  503 (739)
T ss_pred             HHHhHHHHHHhcccchhHH-------HHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence              45688889999999999       788888999999999998888999999999999999999999998 77766644


Q ss_pred             H-----H--------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHH-HHHHhHHHH
Q 012561          351 K-----E--------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLIN-ELRNHLEDA  416 (461)
Q Consensus       351 k-----E--------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~-eLq~RLada  416 (461)
                      +     |        |..+.+.||..|.-+.+.+..+..||.+|..++..++.++.+.|++|..|+..+. .||+|.++.
T Consensus       504 eV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsev  583 (739)
T PF07111_consen  504 EVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEV  583 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4     3        8889999999999999999999999999999999999999999999999998887 999999999


Q ss_pred             hhhhhhh
Q 012561          417 EYKLIEG  423 (461)
Q Consensus       417 E~kiiEG  423 (461)
                      |.++.|+
T Consensus       584 Esrl~E~  590 (739)
T PF07111_consen  584 ESRLREQ  590 (739)
T ss_pred             HHHHHHH
Confidence            8887764

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.04  E-value=1.4e-05  Score=86.86  Aligned_cols=11  Identities=9%  Similarity=0.329  Sum_probs=6.5

Q ss_pred             cHHHHHHHHhh
Q 012561           88 TREDVEALLSE   98 (461)
Q Consensus        88 tredVeALLnE   98 (461)
                      |..||..+|..
T Consensus       118 ~~~~~~~~l~~  128 (1164)
T TIGR02169       118 RLSEIHDFLAA  128 (1164)
T ss_pred             cHHHHHHHHHH
Confidence            55666666543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.01  E-value=1.2e-05  Score=87.26  Aligned_cols=23  Identities=9%  Similarity=0.261  Sum_probs=9.8

Q ss_pred             hHhHHHHHHHHHHHHHHHHHhhh
Q 012561          112 CENMMDYIKRLRLCIKWFQELEG  134 (461)
Q Consensus       112 ~EqM~dyIKrLr~CIrWfqelE~  134 (461)
                      +-.+..|-+++.-+..=+..+++
T Consensus       162 ~~g~~~~~~~~~~~~~~l~~~~~  184 (1164)
T TIGR02169       162 IAGVAEFDRKKEKALEELEEVEE  184 (1164)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.00  E-value=1.7e-05  Score=85.53  Aligned_cols=9  Identities=0%  Similarity=0.372  Sum_probs=4.8

Q ss_pred             cHHHHHHHH
Q 012561           88 TREDVEALL   96 (461)
Q Consensus        88 tredVeALL   96 (461)
                      .-.+|..++
T Consensus       142 ~q~~~~~~~  150 (1179)
T TIGR02168       142 EQGKISEII  150 (1179)
T ss_pred             ecccHHHHH
Confidence            345555555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.92  E-value=5.1e-05  Score=81.95  Aligned_cols=11  Identities=18%  Similarity=0.443  Sum_probs=7.2

Q ss_pred             cHHHHHHHHhh
Q 012561           88 TREDVEALLSE   98 (461)
Q Consensus        88 tredVeALLnE   98 (461)
                      +..+|..+|..
T Consensus       120 ~~~~~~~~l~~  130 (1179)
T TIGR02168       120 RLKDIQDLFLD  130 (1179)
T ss_pred             cHHHHHHHHhc
Confidence            45677777654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.82  E-value=0.0001  Score=79.57  Aligned_cols=130  Identities=22%  Similarity=0.289  Sum_probs=59.3

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHH
Q 012561          124 LCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLARE  203 (461)
Q Consensus       124 ~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kE  203 (461)
                      ....|+.++...|-.+.+.+...+...+.....+. .++...+++..-+.+++.++..|++.+..-+.+ +..++....+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~-~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~-l~~l~~~~~~  239 (880)
T PRK03918        162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIK-EKEKELEEVLREINEISSELPELREELEKLEKE-VKELEELKEE  239 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            33445556666666666666666644433322222 233344444455555555555555444433221 1111111111


Q ss_pred             ----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhh
Q 012561          204 ----KETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHY  255 (461)
Q Consensus       204 ----kEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQY  255 (461)
                          .......+.....+.+++...+.++..+.+++..++...+++.+|..-+..|
T Consensus       240 ~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~~  295 (880)
T PRK03918        240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY  295 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1122233333444445555556666666666665555555555544433333

>PRK02224 chromosome segregation protein; Provisional

Probab=98.77  E-value=0.00019  Score=77.92  Aligned_cols=42  Identities=14%  Similarity=0.264  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561          205 ETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ  246 (461)
Q Consensus       205 EaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ  246 (461)
                      ......+.....+...+..++..+..+..+|..+++-+..++
T Consensus       251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le  292 (880)
T PRK02224        251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELE  292 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444455554444444555555544444444

>PRK02224 chromosome segregation protein; Provisional

Probab=98.73  E-value=0.00071  Score=73.58  Aligned_cols=76  Identities=17%  Similarity=0.155  Sum_probs=34.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHc---hHHHHHHHHHHHHHHHHHHHHHHhH
Q 012561          113 ENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRN---KEEELNLIIVELRKSFASLQEKLAK  188 (461)
Q Consensus       113 EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~---k~eEL~~~i~ELr~~~~SLqe~L~k  188 (461)
                      +.+.+.++.|+-.+.|+..--..+-...+.++..++..+....+++..+..   ..+++...+.+++..+..|.+.+..
T Consensus       352 ~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~  430 (880)
T PRK02224        352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE  430 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444443444444444455555555544444444431   2233344444444444444444443

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.68  E-value=0.00019  Score=81.54  Aligned_cols=154  Identities=23%  Similarity=0.352  Sum_probs=74.9

Q ss_pred             HHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----h
Q 012561          278 SAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----L  353 (461)
Q Consensus       278 ~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l  353 (461)
                      ..+-+.+..+.....+|...+........+.-.+.+.+..++..+-.+|...++.+...-.++..+..++..+++    +
T Consensus       831 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  910 (1163)
T COG1196         831 EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL  910 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333333334444444444445555555555555555555555555555444    3


Q ss_pred             hhhhhHHHHHHhhHHHHHHH----------------HHHHHHHHHhh---hhhhchhhhhhhhhhHHhHHHHHHHHHhHH
Q 012561          354 AVSSEDLEARCASQSNQIRS----------------LSDQLAAAEEK---LEVSDLSALETKTEFEGQKKLINELRNHLE  414 (461)
Q Consensus       354 ~~k~~~LEetCssQ~eqI~~----------------Lq~QLa~A~eK---Lk~aDlsa~etrte~E~Qk~~i~eLq~RLa  414 (461)
                      ..+.+.|+..|.....++..                ++..+...+..   |...++   -+..+|++-+..+.+|...++
T Consensus       911 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~---~Aiee~e~~~~r~~~l~~~~~  987 (1163)
T COG1196         911 RERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNL---RAIEEYEEVEERYEELKSQRE  987 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333222222                33333333333   555554   455578888888888887777


Q ss_pred             HHhhhhhhhHHhHHhhhhhhhhhcccc
Q 012561          415 DAEYKLIEGEKLRKRLHNTILELEVNL  441 (461)
Q Consensus       415 daE~kiiEGEkLRKKLHNTILELKGNI  441 (461)
                      |.+       .=+++|+++|-+++-.+
T Consensus       988 dl~-------~a~~~l~~~i~~~d~~~ 1007 (1163)
T COG1196         988 DLE-------EAKEKLLEVIEELDKEK 1007 (1163)
T ss_pred             HHH-------HHHHHHHHHHHHHHHHH
Confidence            743       33566777776666544

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.51  E-value=0.0013  Score=69.61  Aligned_cols=281  Identities=25%  Similarity=0.315  Sum_probs=174.8

Q ss_pred             HHHHhhhhhHHH-HHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHH-------------------------------
Q 012561          128 WFQELEGDYAFE-HERLRNALELSEQKCAEMELALRNKEEELNLIIVEL-------------------------------  175 (461)
Q Consensus       128 WfqelE~~y~~E-qekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~EL-------------------------------  175 (461)
                      ++.+++.+...+ ...++..|+....+|+..-..|..--+||..+-.|+                               
T Consensus        98 r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L  177 (522)
T PF05701_consen   98 RAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEEL  177 (522)
T ss_pred             HHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555543 344777788888888887777777666665433322                               


Q ss_pred             HHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhh
Q 012561          176 RKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHY  255 (461)
Q Consensus       176 r~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQY  255 (461)
                      ...+..|.+.|...   +++.+++.....+.....+.....+..+|+.+..++..++.++.+..|+-.-|-.-+.-+   
T Consensus       178 ~~Ei~~lke~l~~~---~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l---  251 (522)
T PF05701_consen  178 SKEIIALKESLESA---KLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAEL---  251 (522)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            22222233322222   222222222222223333344455556666667777777777766666655555543333   


Q ss_pred             hhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhh
Q 012561          256 NTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDH  335 (461)
Q Consensus       256 NSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr  335 (461)
                       ..||..+....+  .++..+- .--.....+.....++...|+.++.+.+.+...-..|..-|.+||.||.+++.+=.+
T Consensus       252 -~~Lq~El~~~~~--~~l~~~~-~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~  327 (522)
T PF05701_consen  252 -ESLQAELEAAKE--SKLEEEA-EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELER  327 (522)
T ss_pred             -HHHHHHHHHHHH--HHHhhhH-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             346666666655  2222211 222344455566788889999999999999988888888888888888887766444


Q ss_pred             -------hHHHHHHHHHHHHHhHH-h---hhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHH
Q 012561          336 -------QLSQVQALTAEVIKHKE-L---AVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK  404 (461)
Q Consensus       336 -------~~~QvqsL~aE~~~ykE-l---~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~  404 (461)
                             .-+.|++|.+++.+.+- |   .......-+..+.-...++.+......|+.....+-.-....+.+.+.-+.
T Consensus       328 lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka  407 (522)
T PF05701_consen  328 LKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA  407 (522)
T ss_pred             HHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   34567777777777766 2   222222223455566677777778888888888877788888899999999


Q ss_pred             HHHHHHHhHHHHhh
Q 012561          405 LINELRNHLEDAEY  418 (461)
Q Consensus       405 ~i~eLq~RLadaE~  418 (461)
                      .|...+.||.-+-.
T Consensus       408 ~i~t~E~rL~aa~k  421 (522)
T PF05701_consen  408 AIKTAEERLEAALK  421 (522)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888876543

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.48  E-value=0.0029  Score=76.06  Aligned_cols=313  Identities=20%  Similarity=0.247  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHH---HHHHHHHHHHhHHH
Q 012561          116 MDYIKRLRLCIKWFQELEGD--YAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELR---KSFASLQEKLAKEE  190 (461)
Q Consensus       116 ~dyIKrLr~CIrWfqelE~~--y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr---~~~~SLqe~L~kee  190 (461)
                      +-..-++|-=|.|-..=|.-  --.|+-+|+..++..+....++|..+..-..|.+....+|.   ..++..++.+....
T Consensus       821 ~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~  900 (1930)
T KOG0161|consen  821 WRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLR  900 (1930)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444332221  12344455556666666655555555444444444444432   23444455555555


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHH
Q 012561          191 SDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESI  270 (461)
Q Consensus       191 seKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~  270 (461)
                      ++|..+=..+....+.-...+.--..|.-+..+++.++.....++..++-+...++.=...+..=+++|+.++..-.+.+
T Consensus       901 ~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~  980 (1930)
T KOG0161|consen  901 AEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENI  980 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555544444444444444444444444555555555555555544444444333444444555555555555555


Q ss_pred             hhhhhHHHHHHHhhhhhhhhhhhHHHHH----------HHhHhhHHHHHHhhHHHHHHHH----HHHHHHhhhhhhhhhh
Q 012561          271 KRGEKEKSAIVENLSTLRGQYISLQEQL----------STYKASQDEAMRQKDALVHEVA----SMRVELQQVRDDRDHQ  336 (461)
Q Consensus       271 ~r~eKEK~tivEnls~LrG~~~SLq~QL----------~~skaSq~Ea~kQK~~L~~Ev~----~LR~ELqqvRdDRDr~  336 (461)
                      .++.|||..+-+.+..|-....+..+++          ...-......+.+......|++    .|.++|+-.++.=+-.
T Consensus       981 ~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~ 1060 (1930)
T KOG0161|consen  981 SKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEEL 1060 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            5555555543333333222211111111          1111111111222222222222    3333332222222222


Q ss_pred             HHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHh
Q 012561          337 LSQVQALTAEVIKHKE----LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNH  412 (461)
Q Consensus       337 ~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~R  412 (461)
                      -.++..|...+.+...    +..+...+..--+.-..+|+.|+.++.-..+.|.----+....-..+.+....+.+|+.+
T Consensus      1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333322    444555555555555556666666666666666665555555566666666777777888


Q ss_pred             HHHHhhhhhhhHHhHH
Q 012561          413 LEDAEYKLIEGEKLRK  428 (461)
Q Consensus       413 LadaE~kiiEGEkLRK  428 (461)
                      |.++.-...--..+++
T Consensus      1141 Lee~~~~t~~q~e~~~ 1156 (1930)
T KOG0161|consen 1141 LEEQGGTTAAQLELNK 1156 (1930)
T ss_pred             HHHHhhhHHHHHHHHH
Confidence            8777443333333333

>TIGR00606 rad50 rad50

Probab=98.45  E-value=0.0026  Score=73.37  Aligned_cols=197  Identities=12%  Similarity=0.126  Sum_probs=106.6

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhH-----HHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhh
Q 012561          214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSS-----LQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLR  288 (461)
Q Consensus       214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTS-----LQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~Lr  288 (461)
                      +........+++.++..++..+..++.+++-+++|..+     |..    +..++......+..++.+...+-+.|..|+
T Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~----~e~el~~~~~~ie~le~e~~~l~~~i~~l~ 1004 (1311)
T TIGR00606       929 ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQ----KETELNTVNAQLEECEKHQEKINEDMRLMR 1004 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455666677777777777777777777777664     332    233333334455555555555555555544


Q ss_pred             hhhhhHHHHHHHhHhhHHHH--HHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhh
Q 012561          289 GQYISLQEQLSTYKASQDEA--MRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCAS  366 (461)
Q Consensus       289 G~~~SLq~QL~~skaSq~Ea--~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCss  366 (461)
                      -..+.++..-...+.-.+-.  ..+-..+..++..|..++.++  ||++.......|..++..   |....+.+-..+..
T Consensus      1005 kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~--~~~~~~~e~~~l~~~~~~---l~~~~a~l~g~~k~ 1079 (1311)
T TIGR00606      1005 QDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM--QVLQMKQEHQKLEENIDL---IKRNHVLALGRQKG 1079 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            44433333222222211111  233344445555555444443  333333333333332221   33344455555555


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561          367 QSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI  421 (461)
Q Consensus       367 Q~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii  421 (461)
                      =..||..|+.+|..  ...+-++--+..++.+...-+..|.||..=-.--+..|+
T Consensus      1080 le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~ 1132 (1311)
T TIGR00606      1080 YEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIM 1132 (1311)
T ss_pred             HHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55688888888754  456677777888888888888888888766555555554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.43  E-value=0.008  Score=68.73  Aligned_cols=91  Identities=14%  Similarity=0.300  Sum_probs=48.7

Q ss_pred             HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHH
Q 012561          294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRS  373 (461)
Q Consensus       294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~  373 (461)
                      +...+...+....+...+...+.+++..|+.++++..+.+++...+...+..++....+   +...+...|.-...+|..
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  450 (1163)
T COG1196         374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA---ELEELQTELEELNEELEE  450 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHH
Confidence            33344444455555555555555666666666666666665555555555555544433   444445555555555555


Q ss_pred             HHHHHHHHHhhhhh
Q 012561          374 LSDQLAAAEEKLEV  387 (461)
Q Consensus       374 Lq~QLa~A~eKLk~  387 (461)
                      |+.++......+.-
T Consensus       451 l~~~~~~~~~~~~~  464 (1163)
T COG1196         451 LEEQLEELRDRLKE  464 (1163)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555554443

>PRK03918 chromosome segregation protein; Provisional

Probab=98.42  E-value=0.0055  Score=66.43  Aligned_cols=78  Identities=15%  Similarity=0.205  Sum_probs=36.2

Q ss_pred             HHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh---------HHhhhhhhHHHHHHhhHHHHHHHHHHHH
Q 012561          308 AMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKH---------KELAVSSEDLEARCASQSNQIRSLSDQL  378 (461)
Q Consensus       308 a~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~y---------kEl~~k~~~LEetCssQ~eqI~~Lq~QL  378 (461)
                      +..+.+.+..++.-++.+|...+..-...-.++..|..++...         ..+..+...++..++.-...|..++.++
T Consensus       610 ~~~~l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i  689 (880)
T PRK03918        610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR  689 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444443333333333333333222         2244455555555555555566666555


Q ss_pred             HHHHhhh
Q 012561          379 AAAEEKL  385 (461)
Q Consensus       379 a~A~eKL  385 (461)
                      ...+..+
T Consensus       690 ~~l~~~i  696 (880)
T PRK03918        690 EEIKKTL  696 (880)
T ss_pred             HHHHHHH
Confidence            5555444

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.41  E-value=0.0045  Score=74.52  Aligned_cols=326  Identities=21%  Similarity=0.280  Sum_probs=232.0

Q ss_pred             ccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhh-hhhHHH--------------------------
Q 012561           87 FTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELE-GDYAFE--------------------------  139 (461)
Q Consensus        87 FtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE-~~y~~E--------------------------  139 (461)
                      |-|--|.|.|-+           .|-+...+.|-.+-++||||.-.= ...-.+                          
T Consensus       755 FfkaGvla~LEe-----------~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~L  823 (1930)
T KOG0161|consen  755 FFKAGVLAHLEE-----------MRDEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRL  823 (1930)
T ss_pred             eehHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHH
Confidence            445555555543           378889999999999999986432 222222                          


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHchHHHHHHH---HHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhh
Q 012561          140 HERLRNALELSEQKCAEMELALRNKEEELNLI---IVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHAS  216 (461)
Q Consensus       140 qekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~---i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~  216 (461)
                      -.+++-.|.     ....+-+|..+.+++...   +......-..|+++..+...++.+....+..|++....++.....
T Consensus       824 f~kvkPLL~-----~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~  898 (1930)
T KOG0161|consen  824 FTKVKPLLK-----VTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLER  898 (1930)
T ss_pred             HHHHHHHHH-----hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122222232     233455666666665544   444555666788889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHH
Q 012561          217 LSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQE  296 (461)
Q Consensus       217 LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~  296 (461)
                      +..+...++.++.-.+.++...++.+.-|+-=...+++=-..|...++...-++.+++.||.+....+..|+|...++.+
T Consensus       899 ~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e  978 (1930)
T KOG0161|consen  899 LRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDE  978 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888888877777777777777777777777778889999999999999999999988887


Q ss_pred             HHHH---hHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhh----hhhHHHHHHhhHHH
Q 012561          297 QLST---YKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAV----SSEDLEARCASQSN  369 (461)
Q Consensus       297 QL~~---skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~----k~~~LEetCssQ~e  369 (461)
                      +++.   .+..++++++   .|...+...+..+.+...-.-+.-.+++.+...+..=+....    ..-.||.-|..-++
T Consensus       979 ~~~kL~kekk~lEe~~~---~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e 1055 (1930)
T KOG0161|consen  979 NISKLSKEKKELEERIR---ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQE 1055 (1930)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7654   3444555554   466777778888888888888888888888777776666333    33467777766666


Q ss_pred             HHHHHHHHHHHHHhhhhhhc--hhhhhhhhhh-----HHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhh
Q 012561          370 QIRSLSDQLAAAEEKLEVSD--LSALETKTEF-----EGQKKLINELRNHLEDAEYKLIEGEKLRKRLH  431 (461)
Q Consensus       370 qI~~Lq~QLa~A~eKLk~aD--lsa~etrte~-----E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLH  431 (461)
                      .|..+..+-..-...|+..+  ++.+.++.+.     ..-++.|.+|+.|++|++-.+=....-|.|+-
T Consensus      1056 ~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~e 1124 (1930)
T KOG0161|consen 1056 SIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAE 1124 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66665555555554444433  3444444333     23467888999999988887777666665553

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.27  E-value=0.0065  Score=65.62  Aligned_cols=180  Identities=21%  Similarity=0.301  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhh
Q 012561          138 FEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASL  217 (461)
Q Consensus       138 ~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~L  217 (461)
                      .|.+.|.......++.+    ..|+..++.|...+...++.|..|+.+......    ....+..|++   .+....+.+
T Consensus       150 kE~eeL~~~~~~Le~e~----~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~----~~e~l~~E~~---~L~~q~~e~  218 (546)
T PF07888_consen  150 KEKEELLKENEQLEEEV----EQLREEVERLEAELEQEEEEMEQLKQQQKELTE----SSEELKEERE---SLKEQLAEA  218 (546)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHHHHHHHH
Confidence            34444544444444444    456666677777777777777777766432221    2223333333   344445666


Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHH
Q 012561          218 SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQ  297 (461)
Q Consensus       218 seeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~Q  297 (461)
                      ...+..+..++..++++.+..+-+-.++++-+..+.+.++-|+.-|......++..+.+.......+..|+.+..+++++
T Consensus       219 ~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~  298 (546)
T PF07888_consen  219 RQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQ  298 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            67777788888888888887777777888888888898888886666555555544444444445556677777777777


Q ss_pred             HHHhHhhHHHHHHhhHHHHHHHHHHH----HHHhhhhhh
Q 012561          298 LSTYKASQDEAMRQKDALVHEVASMR----VELQQVRDD  332 (461)
Q Consensus       298 L~~skaSq~Ea~kQK~~L~~Ev~~LR----~ELqqvRdD  332 (461)
                      |.++   ++++..-++.| .++...|    .||++.|-+
T Consensus       299 lqaS---qq~~~~L~~EL-~~~~~~RDrt~aeLh~aRLe  333 (546)
T PF07888_consen  299 LQAS---QQEAELLRKEL-SDAVNVRDRTMAELHQARLE  333 (546)
T ss_pred             HHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence            7654   44444444444 3333333    455555533

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=98.20  E-value=0.014  Score=67.65  Aligned_cols=103  Identities=18%  Similarity=0.224  Sum_probs=78.9

Q ss_pred             HhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHH---------hHhh
Q 012561          234 RIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST---------YKAS  304 (461)
Q Consensus       234 qi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~---------skaS  304 (461)
                      ....++|+..-||+|-..|=.-|-+|++.+.+.......+--+...+-+.++.|.-+..+++-++.-         .+.+
T Consensus       582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~  661 (1317)
T KOG0612|consen  582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERIS  661 (1317)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            4456889999999999999999999999999888888888778888888888887777666554432         2333


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhh
Q 012561          305 QDEAMRQKDALVHEVASMRVELQQVRDDRDHQ  336 (461)
Q Consensus       305 q~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~  336 (461)
                      +.|....+..+..+++.+-.+++|++...-+.
T Consensus       662 ~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~  693 (1317)
T KOG0612|consen  662 DSEKEALEIKLERKLKMLQNELEQENAEHHRL  693 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443567778888999999999998887665

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.14  E-value=0.016  Score=66.81  Aligned_cols=109  Identities=20%  Similarity=0.320  Sum_probs=73.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHhHH-hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh-----hch---hhhhhhhhhHH
Q 012561          331 DDRDHQLSQVQALTAEVIKHKE-LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV-----SDL---SALETKTEFEG  401 (461)
Q Consensus       331 dDRDr~~~QvqsL~aE~~~ykE-l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~-----aDl---sa~etrte~E~  401 (461)
                      ..+.....++..+..++..+.+ +..+.+.++.+...-.+.++.+.+++..+.+-+.-     ..+   .......... 
T Consensus       816 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~~-  894 (1201)
T PF12128_consen  816 EEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAELSEPPNAEDAE-  894 (1201)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhhh-
Confidence            3455555666666666666666 77777788888888888888888888877776661     111   1111111111 


Q ss_pred             hHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccceeee
Q 012561          402 QKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSA  445 (461)
Q Consensus       402 Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNIRv~c  445 (461)
                           .++-+++.+.+..+..-..+++.++..|-.++|.|.-+.
T Consensus       895 -----~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~  933 (1201)
T PF12128_consen  895 -----GSVDERLRDLEDLLQRRKRLREELKKAVERFKGVLTKHS  933 (1201)
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                 445567777777788888999999999999999984433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.13  E-value=0.035  Score=64.03  Aligned_cols=137  Identities=20%  Similarity=0.259  Sum_probs=98.8

Q ss_pred             hhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH------------------
Q 012561          291 YISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE------------------  352 (461)
Q Consensus       291 ~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE------------------  352 (461)
                      +.-+..+++...+-.+.+=.+...+...+..++.++++.+..||....+++.+..++...++                  
T Consensus       464 ~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~  543 (1201)
T PF12128_consen  464 TEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLE  543 (1201)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHH
Confidence            34456666666666666777777888889999999999999999999999998888887766                  


Q ss_pred             -------------------------------------------------------------hhhhhhHHHHHHhhHHHHH
Q 012561          353 -------------------------------------------------------------LAVSSEDLEARCASQSNQI  371 (461)
Q Consensus       353 -------------------------------------------------------------l~~k~~~LEetCssQ~eqI  371 (461)
                                                                                   |..+...++..-....+..
T Consensus       544 fL~~~~p~We~tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl~LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~  623 (1201)
T PF12128_consen  544 FLRKNKPGWEQTIGKVIDEELLYRTDLEPQLVEDSGSDSLYGLSLDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQ  623 (1201)
T ss_pred             HHHhCCCcHHHHhHhhCCHHHhcCCCCCCeecCCCcccccceeEeehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                         4444455555555666666


Q ss_pred             HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhH
Q 012561          372 RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLR  427 (461)
Q Consensus       372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLR  427 (461)
                      ..++++|...+.+++-...-....+++++..+..+..|+......+.++-+--.-|
T Consensus       624 ~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  679 (1201)
T PF12128_consen  624 EELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEER  679 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777666665555554443333

>TIGR00606 rad50 rad50

Probab=98.08  E-value=0.046  Score=63.45  Aligned_cols=32  Identities=19%  Similarity=0.163  Sum_probs=17.9

Q ss_pred             hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 012561          353 LAVSSEDLEARCASQSNQIRSLSDQLAAAEEK  384 (461)
Q Consensus       353 l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eK  384 (461)
                      +..+.+.+...|+.+....+.+.+.|...+.+
T Consensus       996 l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~ 1027 (1311)
T TIGR00606       996 INEDMRLMRQDIDTQKIQERWLQDNLTLRKRE 1027 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555666666666666665555555433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=98.04  E-value=0.013  Score=62.29  Aligned_cols=291  Identities=18%  Similarity=0.251  Sum_probs=178.8

Q ss_pred             ChHHhhHhHHHHHHHHHHHH-HHHHHhhhhh--------HHHHHHHHHHHHHHHhhHHHHHHHHH-chHHHHHHHHHHHH
Q 012561          107 NYKERCENMMDYIKRLRLCI-KWFQELEGDY--------AFEHERLRNALELSEQKCAEMELALR-NKEEELNLIIVELR  176 (461)
Q Consensus       107 dyKgr~EqM~dyIKrLr~CI-rWfqelE~~y--------~~EqekL~~~Le~~ek~~~e~E~~lk-~k~eEL~~~i~ELr  176 (461)
                      ++...++.+=++++.|..=+ ..|.+|..||        .++.-.+...|+..+.++.+....+. -.++.....+.++.
T Consensus       209 ~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~  288 (569)
T PRK04778        209 ALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQ  288 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            45666677777778888744 8888887766        33333445555555544444332222 23334444444444


Q ss_pred             HHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhh
Q 012561          177 KSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYN  256 (461)
Q Consensus       177 ~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYN  256 (461)
                      ..++.|-              +.+++|..|+..+++....+...|..++.....+...+..|+.-|-.-...-       
T Consensus       289 ~~Id~Ly--------------d~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~-------  347 (569)
T PRK04778        289 ERIDQLY--------------DILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESEL-------  347 (569)
T ss_pred             HHHHHHH--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhH-------
Confidence            4444443              4567788889999999999999999999988888888888876654321111       


Q ss_pred             hhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhh
Q 012561          257 TKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQ  336 (461)
Q Consensus       257 SkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~  336 (461)
                          .......+.++.+++.-..+.+.+..-..-|..+++++.......++.-++...+.+.+..||.+-..+|+.    
T Consensus       348 ----~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~k----  419 (569)
T PRK04778        348 ----ESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREK----  419 (569)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence                112233345566666666677777777777888888888877777777777777777777777777766654    


Q ss_pred             HHHHHHHHHHHHHhHHhhhh------hhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchh--hhhhhhhhHHhHHHHHH
Q 012561          337 LSQVQALTAEVIKHKELAVS------SEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLS--ALETKTEFEGQKKLINE  408 (461)
Q Consensus       337 ~~QvqsL~aE~~~ykEl~~k------~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDls--a~etrte~E~Qk~~i~e  408 (461)
                         +..+...+...+..+.+      ...+-.--..-...|..|..+|..  -.+-|..+.  ..+....|+.-.....+
T Consensus       420 ---L~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~--g~VNm~ai~~e~~e~~~~~~~L~~q~~d  494 (569)
T PRK04778        420 ---LERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE--KPINMEAVNRLLEEATEDVETLEEETEE  494 (569)
T ss_pred             ---HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               33333333334432222      223333334445677777777765  334443333  23345556666666677


Q ss_pred             HHHhHHHHhhhhhhhHHhHHhhh
Q 012561          409 LRNHLEDAEYKLIEGEKLRKRLH  431 (461)
Q Consensus       409 Lq~RLadaE~kiiEGEkLRKKLH  431 (461)
                      |..--.-+|.-|-.|...|.-.+
T Consensus       495 L~~~a~~lE~~Iqy~nRfr~~~~  517 (569)
T PRK04778        495 LVENATLTEQLIQYANRYRSDNE  517 (569)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCH
Confidence            77777777766666666665443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.00  E-value=0.05  Score=61.01  Aligned_cols=71  Identities=21%  Similarity=0.325  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHH--------------HHHHHhhhhhHHHHHHHhhh
Q 012561          220 DLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDA--------------AHESIKRGEKEKSAIVENLS  285 (461)
Q Consensus       220 eL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~--------------~~e~~~r~eKEK~tivEnls  285 (461)
                      ||..++.++..++.+......=|..|++-.++.++-++.||+|.+.              ....+.+++.||+..-.-|+
T Consensus       302 E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~  381 (775)
T PF10174_consen  302 ELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIE  381 (775)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555666778999999999999999999854              34455566667766544444


Q ss_pred             hhhhh
Q 012561          286 TLRGQ  290 (461)
Q Consensus       286 ~LrG~  290 (461)
                      -|+++
T Consensus       382 ~l~d~  386 (775)
T PF10174_consen  382 DLRDM  386 (775)
T ss_pred             HHHHH
Confidence            44433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK11637 AmiB activator; Provisional

Probab=97.90  E-value=0.02  Score=58.62  Aligned_cols=42  Identities=29%  Similarity=0.446  Sum_probs=22.0

Q ss_pred             HHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 012561          297 QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLS  338 (461)
Q Consensus       297 QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~  338 (461)
                      +|...+...++.......+..+...-+.+|++.+..|...+.
T Consensus       181 ~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~  222 (428)
T PRK11637        181 ELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLT  222 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555544444433

>PRK11637 AmiB activator; Provisional

Probab=97.89  E-value=0.016  Score=59.23  Aligned_cols=46  Identities=15%  Similarity=0.192  Sum_probs=23.2

Q ss_pred             HHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          307 EAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       307 Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      +.-.++..|..+....+..+.+++.++..+-.++..|.++...+..
T Consensus       202 e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~  247 (428)
T PRK11637        202 EQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD  247 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444555555555555555555555554444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.84  E-value=0.056  Score=58.68  Aligned_cols=193  Identities=24%  Similarity=0.336  Sum_probs=104.1

Q ss_pred             HHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Q 012561          143 LRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLG  222 (461)
Q Consensus       143 L~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~  222 (461)
                      |++.|+...+...++.    .....|+.-...|+..+..|+..|...+-+ +.-+....++      +......|.++.+
T Consensus       141 lQ~qlE~~qkE~eeL~----~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee-~e~L~~~~ke------l~~~~e~l~~E~~  209 (546)
T PF07888_consen  141 LQNQLEECQKEKEELL----KENEQLEEEVEQLREEVERLEAELEQEEEE-MEQLKQQQKE------LTESSEELKEERE  209 (546)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH------HHHHHHHHHHHHH
Confidence            5666666655555433    334456666677777777777777654432 2222222222      2223344566666


Q ss_pred             HHHHHHHHHHHHhHhHHHHHH----HHHHHHhHHHhhhhhhhccHHHHHHHHh-hhhhHHHHHHHhhhhhhhhhhhHHHH
Q 012561          223 KAQEELQSANQRIASINDMYK----LLQEYNSSLQHYNTKLQKDIDAAHESIK-RGEKEKSAIVENLSTLRGQYISLQEQ  297 (461)
Q Consensus       223 k~q~E~~~anqqi~slqDmyK----RLQEYNTSLQQYNSkLQaDl~~~~e~~~-r~eKEK~tivEnls~LrG~~~SLq~Q  297 (461)
                      -++.+...+.++|..|++-.+    +..|..+-++++- .++.+++.....++ +++..    +..+....+....++.+
T Consensus       210 ~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk-~~~~elEq~~~eLk~rLk~~----~~~~~~~~~~~~~~~~e  284 (546)
T PF07888_consen  210 SLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLK-ELKAELEQLEAELKQRLKET----VVQLKQEETQAQQLQQE  284 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhHHHH
Confidence            666666666666666665443    3455555566653 56666666654444 33222    11122112222333333


Q ss_pred             HHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhH
Q 012561          298 LSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHK  351 (461)
Q Consensus       298 L~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~yk  351 (461)
                      ++..+.-..-+=.+..+-..++..|+.||--+..-|||-.+..+...-+++..+
T Consensus       285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~  338 (546)
T PF07888_consen  285 NEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLK  338 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            333332222222333445567888888888888888998888777665554443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.84  E-value=0.034  Score=53.75  Aligned_cols=92  Identities=25%  Similarity=0.365  Sum_probs=58.2

Q ss_pred             cHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhH----HHHHHHHHHHHHHhhhhhhhhhhH
Q 012561          262 DIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKD----ALVHEVASMRVELQQVRDDRDHQL  337 (461)
Q Consensus       262 Dl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~----~L~~Ev~~LR~ELqqvRdDRDr~~  337 (461)
                      .+..+.+.++++.+.-..+--.+.+|++.+.+|..++.......+.......    .+-.|+..||.++++.-.+....+
T Consensus       210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll  289 (312)
T PF00038_consen  210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL  289 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence            3455666777777777777777888888888888888877666555444332    233444455555544444444444


Q ss_pred             HHHHHHHHHHHHhHHh
Q 012561          338 SQVQALTAEVIKHKEL  353 (461)
Q Consensus       338 ~QvqsL~aE~~~ykEl  353 (461)
                      .-=-+|..||++|+-|
T Consensus       290 ~~K~~Ld~EIatYR~L  305 (312)
T PF00038_consen  290 DVKLALDAEIATYRKL  305 (312)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHH
Confidence            4344677899999863

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK09039 hypothetical protein; Validated

Probab=97.77  E-value=0.0036  Score=63.28  Aligned_cols=174  Identities=21%  Similarity=0.287  Sum_probs=103.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhh
Q 012561          212 RSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY  291 (461)
Q Consensus       212 ~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~  291 (461)
                      -.|--|+++|.....++..++.||..+-|+---=+.=+..||+==..|+++++.       ++.+++.+-..+..+.+..
T Consensus        39 ~~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~-------a~~~r~~Le~~~~~~~~~~  111 (343)
T PRK09039         39 VAQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSA-------AEAERSRLQALLAELAGAG  111 (343)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhc
Confidence            357789999999999999999999887766544444444444444444444443       3344433332222222212


Q ss_pred             hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHH
Q 012561          292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI  371 (461)
Q Consensus       292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI  371 (461)
                      ..++.+++.                     |..+|...+..=.....+|..|..+|+..+.                 ||
T Consensus       112 ~~~~~~~~~---------------------l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~-----------------Ql  153 (343)
T PRK09039        112 AAAEGRAGE---------------------LAQELDSEKQVSARALAQVELLNQQIAALRR-----------------QL  153 (343)
T ss_pred             chHHHHHHH---------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-----------------HH
Confidence            222222222                     2222322222223344567777777777766                 67


Q ss_pred             HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHh-hhhhhhHHhHHhhhhhhhhhccc---ceee
Q 012561          372 RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAE-YKLIEGEKLRKRLHNTILELEVN---LSSS  444 (461)
Q Consensus       372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE-~kiiEGEkLRKKLHNTILELKGN---IRv~  444 (461)
                      ..|+..|++++.+.              .+++..|.+|+.+|..|= .++-+-+.+|..++....++-|+   ||+.
T Consensus       154 a~le~~L~~ae~~~--------------~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~  216 (343)
T PRK09039        154 AALEAALDASEKRD--------------RESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLREILGDREGIRIV  216 (343)
T ss_pred             HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEE
Confidence            77777777776654              667778888888887774 34778888888888776655554   5653

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.77  E-value=0.044  Score=52.96  Aligned_cols=129  Identities=20%  Similarity=0.237  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh----HHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012561          114 NMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQK----CAEMELALRNKEEELNLIIVELRKSFASLQEKLAKE  189 (461)
Q Consensus       114 qM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~----~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~ke  189 (461)
                      .|.+..-||-.+|-=-..||..+    .+|...|.....+    +..+-......+.+|...|.++...-+.|+-.+.+-
T Consensus         5 eL~~LNdRla~YIekVr~LE~~N----~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l   80 (312)
T PF00038_consen    5 ELQSLNDRLASYIEKVRFLEQEN----KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL   80 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence            44455555555554444444433    3455555555444    444555566666667777777777777777777777


Q ss_pred             HhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561          190 ESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ  246 (461)
Q Consensus       190 eseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ  246 (461)
                      ..+--+.-.-|..+...+..++....+|..+|+........+..+|.+|++=...+.
T Consensus        81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~  137 (312)
T PF00038_consen   81 KEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK  137 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence            777777777777788888888888888888888888888888888888876444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.73  E-value=0.064  Score=59.42  Aligned_cols=185  Identities=21%  Similarity=0.329  Sum_probs=106.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhhHHH-------HHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561          114 NMMDYIKRLRLCIKWFQELEGDYAFE-------HERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL  186 (461)
Q Consensus       114 qM~dyIKrLr~CIrWfqelE~~y~~E-------qekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L  186 (461)
                      .+-.=|||||.=|.-.-.+|..+-..       -..+++.|...++++.+++    +|+-+|......=+.++.+|+.+|
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq----~Kl~~L~~aRq~DKq~l~~LEkrL  497 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQ----NKLQNLVQARQQDKQSLQQLEKRL  497 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456899999999888888877665       3445556666666666433    344444444444445555555555


Q ss_pred             hHHHhhHHHHHHhhHHHHHHHHHHH----------------------HHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 012561          187 AKEESDKLAALDSLAREKETRLNME----------------------RSHASLSEDLGKAQEELQSANQRIASINDMYKL  244 (461)
Q Consensus       187 ~keeseKl~a~~s~~kEkEaR~~~E----------------------~~~~~LseeL~k~q~E~~~anqqi~slqDmyKR  244 (461)
                      .-|.-.|..+=.-+..|+-+|...|                      .-+..|-.|+.+++.|++...+++..++.=.  
T Consensus       498 ~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--  575 (697)
T PF09726_consen  498 AEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL--  575 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            5554444444444444444443321                      2234455666667777666666665554433  


Q ss_pred             HHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHH
Q 012561          245 LQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRV  324 (461)
Q Consensus       245 LQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~  324 (461)
                           ..|..|+              +.-+++-..+|-+|+.|++++.-|..-|       -..++-|-+|-.-+---|.
T Consensus       576 -----~~lr~~~--------------~e~~~~~e~L~~aL~amqdk~~~LE~sL-------saEtriKldLfsaLg~akr  629 (697)
T PF09726_consen  576 -----QELRKYE--------------KESEKDTEVLMSALSAMQDKNQHLENSL-------SAETRIKLDLFSALGDAKR  629 (697)
T ss_pred             -----HHHHHHH--------------hhhhhhHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHH
Confidence                 4555555              3345556667777777777665555433       3466777777766666666


Q ss_pred             HHhhhh
Q 012561          325 ELQQVR  330 (461)
Q Consensus       325 ELqqvR  330 (461)
                      +|.-.-
T Consensus       630 q~ei~~  635 (697)
T PF09726_consen  630 QLEIAQ  635 (697)
T ss_pred             HHHHHH
Confidence            554433

; GO: 0016021 integral to membrane

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.73  E-value=0.038  Score=56.97  Aligned_cols=53  Identities=6%  Similarity=0.067  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 012561          140 HERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESD  192 (461)
Q Consensus       140 qekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keese  192 (461)
                      ...+...++..+....+.+......+++++..+.++...+.+++.++...+.+
T Consensus       190 i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~  242 (562)
T PHA02562        190 IDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDE  242 (562)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444555555555566666666666666666666666555443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.72  E-value=0.025  Score=60.27  Aligned_cols=189  Identities=16%  Similarity=0.264  Sum_probs=116.8

Q ss_pred             hHHhhHhHH-HHHHHHHHHHHHHHH----hh-hhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHH
Q 012561          108 YKERCENMM-DYIKRLRLCIKWFQE----LE-GDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFAS  181 (461)
Q Consensus       108 yKgr~EqM~-dyIKrLr~CIrWfqe----lE-~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~S  181 (461)
                      +-..|..-. +=+.-|+.=++-..+    ++ .+--.+...++.+|.........+  .++...+.+..+...+-.-++.
T Consensus       220 l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~  297 (569)
T PRK04778        220 LLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDI  297 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHH
Confidence            333444422 445555555554442    22 344567777777777766666554  3445555555555555555666


Q ss_pred             HHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH----------HHHHHHHhHhHHHHHHH-HHHHHh
Q 012561          182 LQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEE----------LQSANQRIASINDMYKL-LQEYNS  250 (461)
Q Consensus       182 Lqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E----------~~~anqqi~slqDmyKR-LQEYNT  250 (461)
                      |+    +|...|-.+-....+=......+...-..|..++++++..          ...+..++..++..++. ....|.
T Consensus       298 le----kE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~  373 (569)
T PRK04778        298 LE----REVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAE  373 (569)
T ss_pred             HH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            64    2333444444444444444555666666788888888887          77788888888877773 344555


Q ss_pred             HHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHh
Q 012561          251 SLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKA  303 (461)
Q Consensus       251 SLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~ska  303 (461)
                      .-..| |.++..+....+.++.++++...|.+.+..||.--....++|.-.+.
T Consensus       374 ~~~~y-sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~  425 (569)
T PRK04778        374 QEIAY-SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRN  425 (569)
T ss_pred             CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55553 66777777777788888888888888888887766555555554443

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.68  E-value=0.049  Score=52.06  Aligned_cols=141  Identities=22%  Similarity=0.328  Sum_probs=104.4

Q ss_pred             hhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHH
Q 012561          289 GQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQS  368 (461)
Q Consensus       289 G~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~  368 (461)
                      +....|..||.-++...+++-..-+....=+..+.++|..+-+-=+..-+.+..|..++.....   ....||..+.-..
T Consensus        92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~---~lk~lE~~~~~~~  168 (237)
T PF00261_consen   92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGN---NLKSLEASEEKAS  168 (237)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH---HHHHhhhhhhhhh
Confidence            3445566688888888888888888888888889999988877777777888888887776655   7778888888777


Q ss_pred             HHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh----hhHHhHHhhhhhhhhhcc
Q 012561          369 NQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI----EGEKLRKRLHNTILELEV  439 (461)
Q Consensus       369 eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii----EGEkLRKKLHNTILELKG  439 (461)
                      ++...++.++..-..+|+-+     ++|.+|.+.  .+..|+.++.+.|-.|.    .-..+.+.|+.|+.||-|
T Consensus       169 ~re~~~e~~i~~L~~~lkea-----E~Rae~aE~--~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~  236 (237)
T PF00261_consen  169 EREDEYEEKIRDLEEKLKEA-----ENRAEFAER--RVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNE  236 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            78888888888888887766     555555553  35555555555554443    235678889999998854

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.63  E-value=0.093  Score=56.21  Aligned_cols=246  Identities=21%  Similarity=0.253  Sum_probs=181.8

Q ss_pred             ChHHhhHhHHHHHHHHH-HHHHHHHHhhhhhH--------HHHHHHHHHHHHHHhhHHHHHHHHHc-hHHHHHHHHHHHH
Q 012561          107 NYKERCENMMDYIKRLR-LCIKWFQELEGDYA--------FEHERLRNALELSEQKCAEMELALRN-KEEELNLIIVELR  176 (461)
Q Consensus       107 dyKgr~EqM~dyIKrLr-~CIrWfqelE~~y~--------~EqekL~~~Le~~ek~~~e~E~~lk~-k~eEL~~~i~ELr  176 (461)
                      +++..++.+=.|++.|. .+-..+.+|..+|-        ++.-.+-..|+..+.++.+....+++ .+++....+.++.
T Consensus       205 ~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~  284 (560)
T PF06160_consen  205 ELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIE  284 (560)
T ss_pred             HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            56667777777777776 55677777776653        45556777777777777777777766 6777777888888


Q ss_pred             HHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH----------HHHHHHHHhHhHHHHHHHHH
Q 012561          177 KSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQE----------ELQSANQRIASINDMYKLLQ  246 (461)
Q Consensus       177 ~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~----------E~~~anqqi~slqDmyKRLQ  246 (461)
                      ..+..|=+.|.+|-..|-..-.....=.+....+...-..|..++++++.          ....+..++..+...|..+.
T Consensus       285 ~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~  364 (560)
T PF06160_consen  285 ERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLE  364 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877777776666655555554455555555556666777777663          34556677777777777777


Q ss_pred             HHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH----------------HH
Q 012561          247 EYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA----------------MR  310 (461)
Q Consensus       247 EYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea----------------~k  310 (461)
                      +--..=+.=-|.++..+....+.+..++++-..|.+.+.+||.--..-+++|...+....+.                +.
T Consensus       365 ~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~  444 (560)
T PF06160_consen  365 ERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLD  444 (560)
T ss_pred             HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence            66666666678899999999999999999999999999999987777777776665554433                33


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          311 QKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       311 QK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      .-....+++..|-.+|.+++=|=|.--.++......|.+..+
T Consensus       445 ~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~  486 (560)
T PF06160_consen  445 YFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEE  486 (560)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            456677888999999999998888888888888888888887

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.60  E-value=0.22  Score=58.30  Aligned_cols=232  Identities=16%  Similarity=0.240  Sum_probs=137.4

Q ss_pred             CCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHH-----------HHHHHHHHHH------------------HHhhH
Q 012561          104 NKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFE-----------HERLRNALEL------------------SEQKC  154 (461)
Q Consensus       104 ~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~E-----------qekL~~~Le~------------------~ek~~  154 (461)
                      .|-++-+..+--++|.++=--|.+|--.+.-.++.+           .+++...|..                  -++.+
T Consensus       296 ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~  375 (1293)
T KOG0996|consen  296 EKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEI  375 (1293)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            334455556667889999889998866555444444           2222222222                  12223


Q ss_pred             HHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012561          155 AEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQR  234 (461)
Q Consensus       155 ~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqq  234 (461)
                      .+....++|+.+.+.....++-......+|.|..--+.=-.+.....+.+..+-.++++-...+.++.+.+.|+..++..
T Consensus       376 ~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~  455 (1293)
T KOG0996|consen  376 KERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEEL  455 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHH
Confidence            34444445555555555555555555555555444333333444455555555556666555666666666555555443


Q ss_pred             hHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHH
Q 012561          235 IASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDA  314 (461)
Q Consensus       235 i~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~  314 (461)
                      ..   +..+-|-+-=-|       |+.....-.+.+.+.+|+=.-..+.++..||       +++.+.+-.+.-..-++.
T Consensus       456 ~~---~~~~~l~e~~~~-------l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~-------e~~vaesel~~L~~~~~~  518 (1293)
T KOG0996|consen  456 LE---KEERELDEILDS-------LKQETEGIREEIEKLEKELMPLLKQVNEARS-------ELDVAESELDILLSRHET  518 (1293)
T ss_pred             HH---HHHHHHHHHHHH-------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            22   222233333233       3344455566777778877777777788888       566666666666666777


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          315 LVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       315 L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      +.+-|..|.+-|++.+.+-+.....+.++..++...|.
T Consensus       519 ~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~  556 (1293)
T KOG0996|consen  519 GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ  556 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            77778888888888888878888888888888877776

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.58  E-value=0.046  Score=56.42  Aligned_cols=65  Identities=17%  Similarity=0.148  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhh
Q 012561          223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQ  290 (461)
Q Consensus       223 k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~  290 (461)
                      .++.++..+.+++.++++...++.+++.   .+.-.++..++........++.+...+-+.|.+|+..
T Consensus       185 ~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~  249 (562)
T PHA02562        185 TLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD  249 (562)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3333333444444444444333333221   2233333333333333344444444444444444333

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=97.44  E-value=0.28  Score=57.23  Aligned_cols=302  Identities=13%  Similarity=0.167  Sum_probs=182.0

Q ss_pred             ccHHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHH
Q 012561           87 FTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEE  166 (461)
Q Consensus        87 FtredVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~e  166 (461)
                      .|+++|.+-|+.= + ++|.      .+.-.-+.-|..-+.|+.+.+.. -.....++..++.+-++..+...++.+.-.
T Consensus        23 p~~~~iq~~l~~~-~-~~~~------~~~k~~~~~l~~tl~~l~~~~~~-~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~   93 (1109)
T PRK10929         23 PDEKQITQELEQA-K-AAKT------PAQAEIVEALQSALNWLEERKGS-LERAKQYQQVIDNFPKLSAELRQQLNNERD   93 (1109)
T ss_pred             CCHHHHHHHHHHh-h-cCCC------hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence            6778898888873 3 3443      22667788888889999888753 355666777777666665544444332100


Q ss_pred             HHHHHHHHHH--HHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh----HhH--
Q 012561          167 ELNLIIVELR--KSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRI----ASI--  238 (461)
Q Consensus       167 EL~~~i~ELr--~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi----~sl--  238 (461)
                      +.    ...-  -..+.|+.++                            ...+.+|..++.++...|.++    .++  
T Consensus        94 ~~----~~~~~~~s~~~Leq~l----------------------------~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~  141 (1109)
T PRK10929         94 EP----RSVPPNMSTDALEQEI----------------------------LQVSSQLLEKSRQAQQEQDRAREISDSLSQ  141 (1109)
T ss_pred             cc----ccccccCCHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence            00    0000  0011222222                            222333555555555555555    333  


Q ss_pred             -----HHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhH
Q 012561          239 -----NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKD  313 (461)
Q Consensus       239 -----qDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~  313 (461)
                           ....+|||+-|+.|+..= .-...++.  .....++-|-+.+--.+..++=.-.|.....+.++.-+|...++-+
T Consensus       142 ~pq~~~~~~~~l~~i~~~L~~~~-~~~~~l~~--a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~  218 (1109)
T PRK10929        142 LPQQQTEARRQLNEIERRLQTLG-TPNTPLAQ--AQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQ  218 (1109)
T ss_pred             chhhHHHHHHHHHHHHHHHhCCC-CCCCcccH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence                 566788888887665421 01122333  3456667777766666666666656666666777777777777777


Q ss_pred             HHHHHHHHHHHHHhhhhhhh-hhhHHHHHH--------------HHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHH
Q 012561          314 ALVHEVASMRVELQQVRDDR-DHQLSQVQA--------------LTAEVIKHKE----LAVSSEDLEARCASQSNQIRSL  374 (461)
Q Consensus       314 ~L~~Ev~~LR~ELqqvRdDR-Dr~~~Qvqs--------------L~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~L  374 (461)
                      .+-.++..|+..+-+-|-.- +..+.+.+.              +...+..|.+    .+.+.|.|-..-..-.+++..+
T Consensus       219 ~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~  298 (1109)
T PRK10929        219 QLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQV  298 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777776665543221 112222222              2222333333    4555555533333334456677


Q ss_pred             HHHHHHHHhhhhhhchhhhhhhhhhHHhHH-----HHHHHHHhHHHHhhhhhhhHHhHHhhhh
Q 012561          375 SDQLAAAEEKLEVSDLSALETKTEFEGQKK-----LINELRNHLEDAEYKLIEGEKLRKRLHN  432 (461)
Q Consensus       375 q~QLa~A~eKLk~aDlsa~etrte~E~Qk~-----~i~eLq~RLadaE~kiiEGEkLRKKLHN  432 (461)
                      .+.+...+|.+.+-..|..-.+.=|..+++     .+..|..+.||+-.+.++=+..|.+|++
T Consensus       299 ~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~~~~~~~l~~~IAdlRl~~f~~~q~~~~l~~  361 (1109)
T PRK10929        299 RQALNTLREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEMAQLRVQRLRYEDLLNKQPQ  361 (1109)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            777888899999999999999988887765     4788899999999999998888888875

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.37  E-value=0.39  Score=53.84  Aligned_cols=204  Identities=16%  Similarity=0.225  Sum_probs=95.2

Q ss_pred             HHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHH---HHHHHH--hhhHHHHHHHHHHH
Q 012561          154 CAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRL---NMERSH--ASLSEDLGKAQEEL  228 (461)
Q Consensus       154 ~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~---~~E~~~--~~LseeL~k~q~E~  228 (461)
                      ...+...++-...+++.-++.|+..++..     .+..+.  .+..+..|..++.   .+...+  ..|..+++......
T Consensus       169 ~e~~~~~l~e~~~~~~~~~e~l~~~~~~~-----~e~~~~--~~~~~~~e~~~~~~l~e~~~~~~~~~l~~e~e~l~~~~  241 (908)
T COG0419         169 YEKLSELLKEVIKEAKAKIEELEGQLSEL-----LEDIED--LLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERL  241 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhHH--HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            44445555555555555555555555511     111111  1333333333331   111111  22455555555555


Q ss_pred             HHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH
Q 012561          229 QSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA  308 (461)
Q Consensus       229 ~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea  308 (461)
                      ..+......+++...+++.|++...+....++..+......+..++.....+.+....+..    ++.++..    ....
T Consensus       242 ~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~----~~~~~~~----~~~~  313 (908)
T COG0419         242 AELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEE----LEEELEG----LRAL  313 (908)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHH
Confidence            5555555555556666666666666665444444444444444444444444443333333    3333333    4445


Q ss_pred             HHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-hhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 012561          309 MRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-LAVSSEDLEARCASQSNQIRSLSDQLA  379 (461)
Q Consensus       309 ~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-l~~k~~~LEetCssQ~eqI~~Lq~QLa  379 (461)
                      +.+.+.+.+.+..+...+....++.       ..+..++..+.+ .......+++.|..-..++..++.++.
T Consensus       314 ~~~~~~~~~~l~~~~~~~~~~~~~~-------~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~  378 (908)
T COG0419         314 LEELEELLEKLKSLEERLEKLEEKL-------EKLESELEELAEEKNELAKLLEERLKELEERLEELEKELE  378 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555554444444       444444444422 233444455555554444444444444

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.35  E-value=0.22  Score=58.17  Aligned_cols=289  Identities=21%  Similarity=0.267  Sum_probs=158.7

Q ss_pred             cccHHHHHHHHhhhhhc-cCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHc-
Q 012561           86 EFTREDVEALLSEKMRY-KNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRN-  163 (461)
Q Consensus        86 eFtredVeALLnEKmk~-k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~-  163 (461)
                      ..++++|+-|=+.=-+- ...-...+....|-+-...||--|.-+--.=.-...+.-.+-..++..+++.++.|..+.- 
T Consensus       774 ~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~  853 (1293)
T KOG0996|consen  774 GVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKK  853 (1293)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            56688887764432221 2223345566666677777776665443311122333344444566666666666666322 


Q ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHhH-HHhhHH-HHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhH
Q 012561          164 -----KEEELNLIIVELRKSFASLQEKLAK-EESDKL-AALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIA  236 (461)
Q Consensus       164 -----k~eEL~~~i~ELr~~~~SLqe~L~k-eeseKl-~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~  236 (461)
                           ...++..+|++|++.+.-+||+=.| .+-+.+ +-|+..+.|                .+-..+.++..+++||.
T Consensus       854 ~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e----------------~~q~qk~kv~~~~~~~~  917 (1293)
T KOG0996|consen  854 VVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGE----------------KVQAQKDKVEKINEQLD  917 (1293)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhch----------------hhHHhHHHHHHHHHHHH
Confidence                 2356777778888887777754444 221111 112222222                22333444555555555


Q ss_pred             hHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHH
Q 012561          237 SINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALV  316 (461)
Q Consensus       237 slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~  316 (461)
                      .+.+=-.++.=-...=+.-=.+.|.-++.....+..+++|..++.+.+..++-...-++.-+.-+-.+..|+-++..++.
T Consensus       918 ~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k  997 (1293)
T KOG0996|consen  918 KLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLK  997 (1293)
T ss_pred             HHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55433333221111111111256677778888899999999999999999888777777777777777777777777777


Q ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhh
Q 012561          317 HEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETK  396 (461)
Q Consensus       317 ~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etr  396 (461)
                      .++..+--...-+.-+|=---..+                     +.|..+-..|++=-.+......+|..+++|  |+|
T Consensus       998 ~~~e~i~k~~~~lk~~rId~~~K~---------------------e~~~~~l~e~~~~~~~~~k~~~~l~~~~~t--E~~ 1054 (1293)
T KOG0996|consen  998 SELENIKKSENELKAERIDIENKL---------------------EAINGELNEIESKIKQPEKELKKLSLCNMT--ETR 1054 (1293)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHH---------------------HHHHHHHHHHHhhhhhHHHhhCccccccch--hhc
Confidence            777666543333322221111222                     223333333444444444777888899987  555


Q ss_pred             hhhHHhHHHHHHHHHhH
Q 012561          397 TEFEGQKKLINELRNHL  413 (461)
Q Consensus       397 te~E~Qk~~i~eLq~RL  413 (461)
                      -..+.--...++|+.++
T Consensus      1055 ~~~~~~~~~~Eeleae~ 1071 (1293)
T KOG0996|consen 1055 PQIELDVESPEELEAEM 1071 (1293)
T ss_pred             cccccccCChHHHHhhh
Confidence            44444444445555444

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.31  E-value=0.78  Score=55.91  Aligned_cols=228  Identities=18%  Similarity=0.230  Sum_probs=139.1

Q ss_pred             HHhhHhHHHHHH----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHH
Q 012561          109 KERCENMMDYIK----RLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQE  184 (461)
Q Consensus       109 Kgr~EqM~dyIK----rLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe  184 (461)
                      ..|++...+=+-    +|--|+--|-++....-+..+.+++.++...+.+..+=..+.++...    |..|....+.|..
T Consensus       804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~----~~~le~k~~eL~k  879 (1822)
T KOG4674|consen  804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTN----IAKLEIKLSELEK  879 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            355555444443    33457777777777777777777777777777776666555554332    2223333333333


Q ss_pred             HHhHHHhhHHHHHH-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccH
Q 012561          185 KLAKEESDKLAALD-SLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDI  263 (461)
Q Consensus       185 ~L~keeseKl~a~~-s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl  263 (461)
                      +|...++.....-- ++-.+.--+...   --...+++.+.+..+..+.-+|.-.+++|.-.-   .||.+-|+.|.-=.
T Consensus       880 ~l~~~~~~~~~l~~~~~~~d~~~~~~~---Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~e---qsl~~~ks~lde~~  953 (1822)
T KOG4674|consen  880 RLKSAKTQLLNLDSKSSNEDATILEDT---LRKELEEITDLKEELTDALSQIREYQEEYSSLE---QSLESVKSELDETR  953 (1822)
T ss_pred             HHHHhHHHHhhccccchhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            33333333221110 111111111111   111223444558889999999999999997654   58888898888777


Q ss_pred             HHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 012561          264 DAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL  343 (461)
Q Consensus       264 ~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL  343 (461)
                      ......|....+++...=+.++.|++..-.|.++++.+...-.   .+..++..++.+|+.|++.+..-+-.+..+..++
T Consensus       954 ~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e---~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~ 1030 (1822)
T KOG4674|consen  954 LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKE---DKLLDLSREISSLQNELKSLLKAASQANEQIEDL 1030 (1822)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh---hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888999999999999999999999999877655422   2345566666666666666555555555555555


Q ss_pred             HHHHHH
Q 012561          344 TAEVIK  349 (461)
Q Consensus       344 ~aE~~~  349 (461)
                      .-++..
T Consensus      1031 k~dl~~ 1036 (1822)
T KOG4674|consen 1031 QNDLKT 1036 (1822)
T ss_pred             HHHHHH
Confidence            544443

>PRK01156 chromosome segregation protein; Provisional

Probab=97.06  E-value=0.74  Score=51.06  Aligned_cols=32  Identities=6%  Similarity=0.179  Sum_probs=18.5

Q ss_pred             hhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561          390 LSALETKTEFEGQKKLINELRNHLEDAEYKLI  421 (461)
Q Consensus       390 lsa~etrte~E~Qk~~i~eLq~RLadaE~kii  421 (461)
                      ...+.....+++-+..|.+|+..+...+.++-
T Consensus       402 ~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i~  433 (895)
T PRK01156        402 IDPDAIKKELNEINVKLQDISSKVSSLNQRIR  433 (895)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445556666777777777666554443

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.99  E-value=0.93  Score=50.94  Aligned_cols=181  Identities=23%  Similarity=0.263  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHhHHHhhhhhh--hccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHH
Q 012561          237 SINDMYKLLQEYNSSLQHYNTKL--QKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDA  314 (461)
Q Consensus       237 slqDmyKRLQEYNTSLQQYNSkL--QaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~  314 (461)
                      .++..-+++++.+.-++.||...  +..+....+.++.+.+....|.+.++.+.....++         .-.++-.+.+.
T Consensus       560 e~~~le~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~---------~~~~~~~e~~~  630 (908)
T COG0419         560 ELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSL---------ELSEAENELEE  630 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHH
Confidence            33355567777888888887776  56666666555555555555555555544433333         22223333333


Q ss_pred             HHHHHHHHHHHHh------hhhhh-hhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 012561          315 LVHEVASMRVELQ------QVRDD-RDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV  387 (461)
Q Consensus       315 L~~Ev~~LR~ELq------qvRdD-RDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~  387 (461)
                      ...++...+..++      ....+ ....-.++..+.+++...-.  ..-+.  ...--....+..+..+|.....+|.-
T Consensus       631 ~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~el~~~~~~l~~  706 (908)
T COG0419         631 AEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQ--RIENE--EQLEEKLEELEQLEEELEQLREELEE  706 (908)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3334433333333      11111 11122222233333332000  00000  00011111144455555555555433


Q ss_pred             hchhhhh---hhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhh
Q 012561          388 SDLSALE---TKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRL  430 (461)
Q Consensus       388 aDlsa~e---trte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKL  430 (461)
                      ..-....   ..-..+.++..+..+..++..++..+-.-..||.++
T Consensus       707 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  752 (908)
T COG0419         707 LLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKL  752 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3222222   555666677777777777777776666666665544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.97  E-value=0.00018  Score=79.94  Aligned_cols=295  Identities=21%  Similarity=0.297  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHH---HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHH
Q 012561          136 YAFEHERLRNALELSEQKCAEMEL---ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMER  212 (461)
Q Consensus       136 y~~EqekL~~~Le~~ek~~~e~E~---~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~  212 (461)
                      +..|...|..+|+..+.+...+..   .|...++++...+.+-.+.-.+|+.++...+.+.-.+-+.+..|-+++...++
T Consensus       213 L~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~  292 (859)
T PF01576_consen  213 LQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELER  292 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            334455555555555554444332   55667777777777777777888888888888888888888888888888777


Q ss_pred             HHhhhHHHHHHHHHHHHH---------------HHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHH-------HHHH
Q 012561          213 SHASLSEDLGKAQEELQS---------------ANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAA-------HESI  270 (461)
Q Consensus       213 ~~~~LseeL~k~q~E~~~---------------anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~-------~e~~  270 (461)
                      ....+..+|.-++.-...               +..+|..+++-+.-++..+.+|-.=..+|++++.-+       ...+
T Consensus       293 qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~  372 (859)
T PF01576_consen  293 QLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAA  372 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666544433222               222222222222223333344444444555554443       3333


Q ss_pred             hhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHh
Q 012561          271 KRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKH  350 (461)
Q Consensus       271 ~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~y  350 (461)
                      ..++|-....-..++.+++.+..++       +..+.+-+....+-.|+-.|+.+|....+..+..--....|..||.-+
T Consensus       373 ~~LeKKqr~fDk~l~e~k~~~~~~~-------~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl  445 (859)
T PF01576_consen  373 AELEKKQRKFDKQLAEWKAKVEELQ-------AERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDL  445 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccc
Confidence            3444433334444445555433333       333344455566666777777777777777776666667777776655


Q ss_pred             HH-----------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHH---------------hHH
Q 012561          351 KE-----------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEG---------------QKK  404 (461)
Q Consensus       351 kE-----------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~---------------Qk~  404 (461)
                      ..           |-.....||..-.-+..++..+...|..+..+.....+.....+++|+-               ..+
T Consensus       446 ~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr  525 (859)
T PF01576_consen  446 TSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQR  525 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHH
Confidence            44           5556667777788888888888888888888888877777777776653               266


Q ss_pred             HHHHHHHhHHHHhhhh-hhhHHhHHhhhhhhhhhc
Q 012561          405 LINELRNHLEDAEYKL-IEGEKLRKRLHNTILELE  438 (461)
Q Consensus       405 ~i~eLq~RLadaE~ki-iEGEkLRKKLHNTILELK  438 (461)
                      .|.+|+..| |.|.+- -+.-..||||-.-|-||.
T Consensus       526 ~l~~le~~L-E~E~k~r~~~~r~kkKLE~~l~eLe  559 (859)
T PF01576_consen  526 QLESLEAEL-EEERKERAEALREKKKLESDLNELE  559 (859)
T ss_dssp             -----------------------------------
T ss_pred             HHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999 456554 334677888888887774

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.89  E-value=0.44  Score=45.68  Aligned_cols=194  Identities=22%  Similarity=0.375  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHchH---HHHHHHHHHHHHHHHHHHHHHhHHHh------hHHHHHHhhHHHHHH-HHHHH
Q 012561          142 RLRNALELSEQKCAEMELALRNKE---EELNLIIVELRKSFASLQEKLAKEES------DKLAALDSLAREKET-RLNME  211 (461)
Q Consensus       142 kL~~~Le~~ek~~~e~E~~lk~k~---eEL~~~i~ELr~~~~SLqe~L~kees------eKl~a~~s~~kEkEa-R~~~E  211 (461)
                      .++..||.++.++.+++..++...   +..++-+..|.+.+..|++.|.+.+.      .|++.++.-..|-+. +.++|
T Consensus         5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE   84 (237)
T PF00261_consen    5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE   84 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777777777665544   44556677788888888888887664      577777776666644 44555


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhh
Q 012561          212 RSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY  291 (461)
Q Consensus       212 ~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~  291 (461)
                      .-.....+-|+.+...+..+...   ++|.-.++.|-..-|..    +..||..+.+....++..=..+-+.|..+.+  
T Consensus        85 ~r~~~~eeri~~lE~~l~ea~~~---~ee~e~k~~E~~rkl~~----~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~--  155 (237)
T PF00261_consen   85 NREQSDEERIEELEQQLKEAKRR---AEEAERKYEEVERKLKV----LEQELERAEERAEAAESKIKELEEELKSVGN--  155 (237)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHH---HHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhchhHHHHHHHHHHHHH--
Confidence            55555566666666665555544   45555566666555543    6777777777777777665555566655555  


Q ss_pred             hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 012561          292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIK  349 (461)
Q Consensus       292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~  349 (461)
                           .|-+.-++...+...-+.+-..+..|..-|..+-.--+..-..|+.|..+|..
T Consensus       156 -----~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~  208 (237)
T PF00261_consen  156 -----NLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDR  208 (237)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 44444456666666667777778888877777755545444455554444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.86  E-value=1.6  Score=51.64  Aligned_cols=219  Identities=21%  Similarity=0.208  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHH------HHHHh-
Q 012561          116 MDYIKRLRLCIKWFQE-LEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASL------QEKLA-  187 (461)
Q Consensus       116 ~dyIKrLr~CIrWfqe-lE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SL------qe~L~-  187 (461)
                      -+-|.+|+.=..=+++ -+--+..++......+...+.+..+++++++.+++||+-+-........++      +.+|. 
T Consensus       471 ~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~  550 (1317)
T KOG0612|consen  471 EETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEE  550 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4455666555444443 223344555555556666677777777777777777766533333322222      21211 


Q ss_pred             -----HHHhhHH--------------HHHHhhH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 012561          188 -----KEESDKL--------------AALDSLA-REKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQE  247 (461)
Q Consensus       188 -----keeseKl--------------~a~~s~~-kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQE  247 (461)
                           .-|+++.              .-+.+-. ...+.+.-.+.+.-.|+++..+++.+......+-+.+..+.+-+++
T Consensus       551 ~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~  630 (1317)
T KOG0612|consen  551 AELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKE  630 (1317)
T ss_pred             hhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                 1111111              0111111 1222334455566677778888888888888888888888888888


Q ss_pred             HHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhh-----------------hhhhhhhhhH-------HHHHHHhHh
Q 012561          248 YNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENL-----------------STLRGQYISL-------QEQLSTYKA  303 (461)
Q Consensus       248 YNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnl-----------------s~LrG~~~SL-------q~QL~~ska  303 (461)
                      =++|||-=|-.+..++-++.+ .++..-|..+=+|.-                 --+..-...+       +.+...++.
T Consensus       631 ~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~e~~~~e~~~~l  709 (1317)
T KOG0612|consen  631 EISSLEETLKAGKKELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKL  709 (1317)
T ss_pred             HHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            888888888777777777766 665555554444441                 1112222222       344444444


Q ss_pred             hHHHHHHhhH-H----HHHHHHHHHHHHhhhhhhhhh
Q 012561          304 SQDEAMRQKD-A----LVHEVASMRVELQQVRDDRDH  335 (461)
Q Consensus       304 Sq~Ea~kQK~-~----L~~Ev~~LR~ELqqvRdDRDr  335 (461)
                      |.+...+.|- .    +..|++.|+.++.+.++-.-+
T Consensus       710 seek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~  746 (1317)
T KOG0612|consen  710 SEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNE  746 (1317)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhh
Confidence            4444444332 1    455667777777666644333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.83  E-value=0.00028  Score=78.50  Aligned_cols=227  Identities=25%  Similarity=0.344  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHchH----HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 012561          138 FEHERLRNALELSEQKCAEMELALRNKE----EELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERS  213 (461)
Q Consensus       138 ~EqekL~~~Le~~ek~~~e~E~~lk~k~----eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~  213 (461)
                      .|..+|+..|+.....|...-..|+-|.    ++|+.-|..|++.-+.|+-.-..-+.+--++...+....-++..+|+.
T Consensus       102 ~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~  181 (859)
T PF01576_consen  102 AELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKK  181 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Confidence            5667888888887777776666666554    566666666666666555444444444444555555555666667776


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhh
Q 012561          214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS  293 (461)
Q Consensus       214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~S  293 (461)
                      .-.+-..|.-++.-+...+..+..+.+...+|+       .=|+-|...++.....+..+.+.|+              +
T Consensus       182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~-------~E~~eL~~qLee~e~~~~~l~r~k~--------------~  240 (859)
T PF01576_consen  182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQ-------SENSELTRQLEEAESQLSQLQREKS--------------S  240 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--------------H
Confidence            666666666666555555555554444444433       3344445555555555555555443              4


Q ss_pred             HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhh-------hHHHHHHHHHHHHHhHH-----hhhhhhHHH
Q 012561          294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDH-------QLSQVQALTAEVIKHKE-----LAVSSEDLE  361 (461)
Q Consensus       294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr-------~~~QvqsL~aE~~~ykE-----l~~k~~~LE  361 (461)
                      |..||+-++...++.++.|..|.+.+..+..|+..+|+..|-       .-.|+..+.+|+..++-     ...++..||
T Consensus       241 L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelE  320 (859)
T PF01576_consen  241 LESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELE  320 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHH
Confidence            556788888888888888888888888888888888776553       33456666777766654     444455565


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHhhh
Q 012561          362 ARCASQSNQIRSLSDQLAAAEEKL  385 (461)
Q Consensus       362 etCssQ~eqI~~Lq~QLa~A~eKL  385 (461)
                      +.=-.-..+|..++.++..++.+.
T Consensus       321 eaKKkL~~~L~el~e~le~~~~~~  344 (859)
T PF01576_consen  321 EAKKKLERKLQELQEQLEEANAKV  344 (859)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544444445555555555554443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK01156 chromosome segregation protein; Provisional

Probab=96.83  E-value=1.2  Score=49.56  Aligned_cols=14  Identities=14%  Similarity=0.238  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHHHHH
Q 012561          367 QSNQIRSLSDQLAA  380 (461)
Q Consensus       367 Q~eqI~~Lq~QLa~  380 (461)
                      -..+|..+..++..
T Consensus       700 l~~~i~~l~~~~~~  713 (895)
T PRK01156        700 LESTIEILRTRINE  713 (895)
T ss_pred             HHHHHHHHHhhHHH
Confidence            33333333333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.81  E-value=0.034  Score=50.91  Aligned_cols=104  Identities=17%  Similarity=0.257  Sum_probs=90.8

Q ss_pred             HHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 012561          267 HESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAE  346 (461)
Q Consensus       267 ~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE  346 (461)
                      .+.+++.+-+++       +|.+|+-+|.-.|..+...+..++.+-+....||.+|..+|..++..|.+.-..+.++..|
T Consensus         9 ~~kLK~~~~e~d-------sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE   81 (140)
T PF10473_consen    9 EEKLKESESEKD-------SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE   81 (140)
T ss_pred             HHHHHHHHHhHh-------hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677776665       5678999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHH
Q 012561          347 VIKHKE----LAVSSEDLEARCASQSNQIRSLSDQ  377 (461)
Q Consensus       347 ~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~Q  377 (461)
                      -...--    ...++.+||..+++=...|..+++.
T Consensus        82 k~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e  116 (140)
T PF10473_consen   82 KENLDKELQKKQEKVSELESLNSSLENLLQEKEQE  116 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            765532    6668999999999999999888877

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.78  E-value=0.82  Score=51.01  Aligned_cols=53  Identities=30%  Similarity=0.349  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHH---HHchHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012561          138 FEHERLRNALELSEQKCAEMELA---LRNKEEELNLIIVELRKSFASLQEKLAKEE  190 (461)
Q Consensus       138 ~EqekL~~~Le~~ek~~~e~E~~---lk~k~eEL~~~i~ELr~~~~SLqe~L~kee  190 (461)
                      .|.++|+..|...++-=.|+-.+   +-+-+..+...+..||+.+..||-++..-.
T Consensus       425 ~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~  480 (697)
T PF09726_consen  425 ADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV  480 (697)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999998888765555555   445577888889999999999998887643

; GO: 0016021 integral to membrane

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.75  E-value=1.7  Score=50.43  Aligned_cols=251  Identities=19%  Similarity=0.287  Sum_probs=162.5

Q ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561          160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN  239 (461)
Q Consensus       160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slq  239 (461)
                      .|+...|.|...-+.+-.+.++||-.|...--++-+|.+.-.+-++.-       +.+-+-++=+..+..-|..+..+||
T Consensus       259 kmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~em-------ad~ad~iEmaTldKEmAEERaesLQ  331 (1243)
T KOG0971|consen  259 KMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEM-------ADTADAIEMATLDKEMAEERAESLQ  331 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            478888899999999999999999999998888888887765555432       2333444555555666666666666


Q ss_pred             HHHHHHHHHHhHHHhhhhhhhccHHHHHHH---------------HhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhh
Q 012561          240 DMYKLLQEYNSSLQHYNTKLQKDIDAAHES---------------IKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKAS  304 (461)
Q Consensus       240 DmyKRLQEYNTSLQQYNSkLQaDl~~~~e~---------------~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaS  304 (461)
                      -=.--|+|-|-+       |-.|++...+.               .++++---+.+-++|-.||+              .
T Consensus       332 ~eve~lkEr~de-------letdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD--------------l  390 (1243)
T KOG0971|consen  332 QEVEALKERVDE-------LETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD--------------L  390 (1243)
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh--------------c
Confidence            555555554443       34555444332               23333333333333333443              3


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH---------------------hhhhhhHHHHH
Q 012561          305 QDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE---------------------LAVSSEDLEAR  363 (461)
Q Consensus       305 q~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE---------------------l~~k~~~LEet  363 (461)
                      --.+..-+-.+.+|++.++.|+--++.-+.+...++.-+.+-|+-+||                     |-.|+..|||+
T Consensus       391 sA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeet  470 (1243)
T KOG0971|consen  391 SASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEET  470 (1243)
T ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHH
Confidence            333444455688999999999999999999999999999999999998                     33445555555


Q ss_pred             HhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHH-------hHHhhhhhhhh
Q 012561          364 CASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEK-------LRKRLHNTILE  436 (461)
Q Consensus       364 CssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEk-------LRKKLHNTILE  436 (461)
                      -. +-|-.+.+.+||.-.+.-+..      .-|.|.+--+--+++|+.|..+|--.+++-+-       |=.+|..-|.|
T Consensus       471 v~-dlEalee~~EQL~Esn~ele~------DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe  543 (1243)
T KOG0971|consen  471 VG-DLEALEEMNEQLQESNRELEL------DLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQE  543 (1243)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            32 344456667788877766542      34666666667778888887777766666543       33456666777


Q ss_pred             hcccceeeeee
Q 012561          437 LEVNLSSSALF  447 (461)
Q Consensus       437 LKGNIRv~crv  447 (461)
                      |+.  ++|..+
T Consensus       544 ~~d--q~~Sse  552 (1243)
T KOG0971|consen  544 LTD--QQESSE  552 (1243)
T ss_pred             HHh--hhhhhH
Confidence            765  444433

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=96.74  E-value=0.15  Score=57.21  Aligned_cols=148  Identities=28%  Similarity=0.325  Sum_probs=91.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561          216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ  295 (461)
Q Consensus       216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq  295 (461)
                      .|-+++++.-.|+.+|+|+..+..|-++||-  -               ++-|.+.---||..+-.|-.       +.|-
T Consensus       167 kl~~~~qe~naeL~rarqreemneeh~~rls--d---------------tvdErlqlhlkermaAle~k-------n~L~  222 (916)
T KOG0249|consen  167 KLEEQLEELNAELQRARQREKMNEEHNKRLS--D---------------TVDERLQLHLKERMAALEDK-------NRLE  222 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccccc--c---------------ccHHHHHHHHHHHHHHHHHH-------HHHH
Confidence            4455555566666666666666666666651  1               12244444445555555544       4455


Q ss_pred             HHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-----------------------
Q 012561          296 EQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-----------------------  352 (461)
Q Consensus       296 ~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-----------------------  352 (461)
                      .++++.|--..+.-+-|+.|.++.+.||+|+.|.|  | +.+.+-+.+-..+.+|-+                       
T Consensus       223 ~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~--~-~~~~~~~~mrd~~~~~~e~~~~~~~~~~k~S~~~rrp~~gr  299 (916)
T KOG0249|consen  223 QELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR--R-SSLEKEQELRDHLRTYAERRRETETTNYKTSGVRRRPRKGR  299 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--H-HHHhhhhhhcchhhhhHHHHHhhcchhhhhhhhhhhhhhhh
Confidence            57777777777888999999999999999999999  3 444555555555555555                       


Q ss_pred             ------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhch
Q 012561          353 ------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDL  390 (461)
Q Consensus       353 ------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDl  390 (461)
                            ...|+-.|++.-.--.-|+.-|+.++-++..-+-+||.
T Consensus       300 L~~~rdep~kv~~l~~q~w~r~qq~~vl~~~~q~f~S~~~~ad~  343 (916)
T KOG0249|consen  300 LKALRDEPEKVQTLNEQEWARDQQAQVLANVLQAFESDLTGSDS  343 (916)
T ss_pred             HHHhhhchHHHHHHHHHHHHHHHHHHhccchhhhhhcCCccccc
Confidence                  23355555555555555555666556666655555554

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.72  E-value=1.7  Score=50.02  Aligned_cols=173  Identities=18%  Similarity=0.209  Sum_probs=106.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHH
Q 012561          134 GDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERS  213 (461)
Q Consensus       134 ~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~  213 (461)
                      .-...|+++|+..+........+.|... +.++|..-.+.-...+|.-|-+++..-..++.++++-|..=.-.-.+++.+
T Consensus       382 qe~~~e~eqLr~elaql~a~r~q~eka~-~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s  460 (980)
T KOG0980|consen  382 QENREEQEQLRNELAQLLASRTQLEKAQ-VLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQS  460 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456777888877666655555555432 236777777777788888888888888888888888887766555555555


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhh
Q 012561          214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS  293 (461)
Q Consensus       214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~S  293 (461)
                      +.       .+..+...+|.++..++|          -.++.|.|.+.++.    .++.++.|+.....-+..|.+....
T Consensus       461 ~~-------~~~~~~~~L~d~le~~~~----------~~~~~~~K~e~~~~----~le~l~~El~~l~~e~~~lq~~~~~  519 (980)
T KOG0980|consen  461 ID-------DVEEENTNLNDQLEELQR----------AAGRAETKTESQAK----ALESLRQELALLLIELEELQRTLSN  519 (980)
T ss_pred             HH-------HHHHHHHHHHHHHHHHHH----------HHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            55       333334444444444443          23445556555543    3455666666666666666665322


Q ss_pred             HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhh
Q 012561          294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQ  328 (461)
Q Consensus       294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqq  328 (461)
                      +-.--..-.+-..+..+|||.+..+|.-=+.|++-
T Consensus       520 ~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~  554 (980)
T KOG0980|consen  520 LAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREA  554 (980)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            22222223345577889999998887655544433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.63  E-value=2.6  Score=50.89  Aligned_cols=118  Identities=16%  Similarity=0.186  Sum_probs=54.3

Q ss_pred             HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhh------------hhhhHHHHHHHHHHHHHhHH-------hh
Q 012561          294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD------------RDHQLSQVQALTAEVIKHKE-------LA  354 (461)
Q Consensus       294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdD------------RDr~~~QvqsL~aE~~~ykE-------l~  354 (461)
                      |++-++.-.+...+...+-.++..++..+...+++.+..            |-.....+..+......++-       +.
T Consensus       440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  519 (1486)
T PRK04863        440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLR  519 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHH
Confidence            444444444444444444444444444444444444332            33333333333333333333       55


Q ss_pred             hhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHH
Q 012561          355 VSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLED  415 (461)
Q Consensus       355 ~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLad  415 (461)
                      .+..+||-..-.|+...+.|.    .++.++...=-++.+--..+++|...+++|..-+++
T Consensus       520 ~~~~~l~~~~~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  576 (1486)
T PRK04863        520 MRLSELEQRLRQQQRAERLLA----EFCKRLGKNLDDEDELEQLQEELEARLESLSESVSE  576 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666667766666665554443    333333322222333333455666666555554444

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.59  E-value=1.4  Score=47.22  Aligned_cols=187  Identities=18%  Similarity=0.239  Sum_probs=98.9

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhh
Q 012561          214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS  293 (461)
Q Consensus       214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~S  293 (461)
                      ..+...||+.++..+..++.-+.+|.+.              ...|..++..+...+.++...-...--.+++|.+..+.
T Consensus       283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~--------------vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~  348 (522)
T PF05701_consen  283 LASAKKELEEAKKELEKAKEEASSLRAS--------------VESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK  348 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence            4445555555555555555544444433              34456677777777776665444444445555555555


Q ss_pred             HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHH
Q 012561          294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEARCASQSN  369 (461)
Q Consensus       294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~e  369 (461)
                      ++..|..+++...       .....+..|-..|||+..+-+..-........|+.++++    ....+...|.+|..-.+
T Consensus       349 ~r~eLea~~~~e~-------~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~k  421 (522)
T PF05701_consen  349 TRSELEAAKAEEE-------KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALK  421 (522)
T ss_pred             HHHHHHHHHhhhc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555544444333       233445555555666666655555556666666666665    44455556666655555


Q ss_pred             HHHHHHHHHHHHHhhhhh--------------hchhhhhhhhhhHHhHHHHHHHH----HhHHHHhhhhh
Q 012561          370 QIRSLSDQLAAAEEKLEV--------------SDLSALETKTEFEGQKKLINELR----NHLEDAEYKLI  421 (461)
Q Consensus       370 qI~~Lq~QLa~A~eKLk~--------------aDlsa~etrte~E~Qk~~i~eLq----~RLadaE~kii  421 (461)
                      .+..-..-=+.|-..++.              +.-...-+.-||+.-.+..++..    .|.+.|-.+|=
T Consensus       422 e~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve  491 (522)
T PF05701_consen  422 EAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVE  491 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554444333333333331              11224456677777777766643    35666655554

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.53  E-value=1.9  Score=48.00  Aligned_cols=236  Identities=22%  Similarity=0.294  Sum_probs=129.8

Q ss_pred             HHHHHHHhHHHhhHHHHHH--hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhh-h
Q 012561          180 ASLQEKLAKEESDKLAALD--SLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHY-N  256 (461)
Q Consensus       180 ~SLqe~L~keeseKl~a~~--s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQY-N  256 (461)
                      .-|.+++.+.+..-...++  ....+.+.-...-.-++.|-++...++.-+..+..+|.+++--.+--|-==+-+=+| -
T Consensus       148 ~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~d  227 (629)
T KOG0963|consen  148 RNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYD  227 (629)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Confidence            3344555555554444444  333333333333344566666666666666667777766643332222111111111 1


Q ss_pred             hh----------hhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH-----------HHhhHHH
Q 012561          257 TK----------LQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA-----------MRQKDAL  315 (461)
Q Consensus       257 Sk----------LQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea-----------~kQK~~L  315 (461)
                      -.          +-.|++.+.-.+--+|+|...+-+              ||..+..+++-+           +-|||  
T Consensus       228 ee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~--------------ql~~~N~~~~~~~~~~i~~~~~~L~~kd--  291 (629)
T KOG0963|consen  228 EEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE--------------QLAKANSSKKLAKIDDIDALGSVLNQKD--  291 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhhhhhhhccCCchHHHHHHHhHHH--
Confidence            11          123444454455555555444333              444444444333           33444  


Q ss_pred             HHHHHHHHHHHhhh----hhhhhhhHHHHHHHHHHHHHhHH-----------------hhhhhhHHH------HHHhhHH
Q 012561          316 VHEVASMRVELQQV----RDDRDHQLSQVQALTAEVIKHKE-----------------LAVSSEDLE------ARCASQS  368 (461)
Q Consensus       316 ~~Ev~~LR~ELqqv----RdDRDr~~~QvqsL~aE~~~ykE-----------------l~~k~~~LE------etCssQ~  368 (461)
                       .|+..|=.+++++    +..|..+.+||++|..++..|..                 +-...+.|-      ..|++-.
T Consensus       292 -~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~ief~~se~a~~~  370 (629)
T KOG0963|consen  292 -SEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAIEFGDSEEANDE  370 (629)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHhhcCCccccccc
Confidence             3444455555554    46788999999999999988876                 111111111      3455444


Q ss_pred             -HHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhh
Q 012561          369 -NQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTIL  435 (461)
Q Consensus       369 -eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTIL  435 (461)
                       +..++|.-.|...|.||.--..+.--+-+++.+   .|.+++-+-.+.+.++-+|..+=-||-+-+.
T Consensus       371 ~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~---~~~~~~~~~~el~~~~~~~ke~i~klE~dl~  435 (629)
T KOG0963|consen  371 DETAKTLESLLLEKNRKLQNENASLRVANSGLSG---RITELSKKGEELEAKATEQKELIAKLEQDLL  435 (629)
T ss_pred             ccccchHHHHHHHHHhhhhHHHHHHhccccccch---hHHHHHhhhhhhHHHHHHHHHHHHHHHhhHh
Confidence             788899999999999887665555444444444   6666777777777777777777666666654

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=96.51  E-value=2.5  Score=49.33  Aligned_cols=141  Identities=21%  Similarity=0.250  Sum_probs=97.3

Q ss_pred             hhHHHHHHHHHHHHHHHh---------hHHHH--HH-HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHH
Q 012561          135 DYAFEHERLRNALELSEQ---------KCAEM--EL-ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAR  202 (461)
Q Consensus       135 ~y~~EqekL~~~Le~~ek---------~~~e~--E~-~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~k  202 (461)
                      .|..|+|+|++.|-+++.         ++...  |. .+..++++++.-+..+++++.++++.+.-+.-.+...-.-..+
T Consensus       408 d~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~  487 (1041)
T KOG0243|consen  408 DLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEK  487 (1041)
T ss_pred             HHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            688999999999998764         45333  33 5567888999999999999999999998665555554444444


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhh
Q 012561          203 EKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEK  275 (461)
Q Consensus       203 EkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eK  275 (461)
                      =+...........++-+++.+++..+.-..--|.-..-.-.-+..-++-||.|+..-|.|++...+.+.+..+
T Consensus       488 ~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~~~  560 (1041)
T KOG0243|consen  488 LKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRKDR  560 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            4444455555556666666666666444433344444444455666888888888888888888877777654

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.46  E-value=0.83  Score=49.98  Aligned_cols=127  Identities=20%  Similarity=0.281  Sum_probs=90.2

Q ss_pred             hhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHH----HHHh-----
Q 012561          257 TKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMR----VELQ-----  327 (461)
Q Consensus       257 SkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR----~ELq-----  327 (461)
                      +.|++....+...++.++-|+.-|--..+.|+++...+..||+.....+.+.-.+..+|..|+..+.    .||.     
T Consensus       151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~  230 (546)
T KOG0977|consen  151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK  230 (546)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4567777777777777777777777777777777777777888888888888888888888877766    3332     


Q ss_pred             -------------------hhhhhhhhhHHHHHHHHHHHHH----------------------hHH-----------hhh
Q 012561          328 -------------------QVRDDRDHQLSQVQALTAEVIK----------------------HKE-----------LAV  355 (461)
Q Consensus       328 -------------------qvRdDRDr~~~QvqsL~aE~~~----------------------ykE-----------l~~  355 (461)
                                         .+||-|+++-++++.-..|+..                      ++|           |..
T Consensus       231 ~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~  310 (546)
T KOG0977|consen  231 ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRA  310 (546)
T ss_pred             HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhh
Confidence                               2445555555554443333221                      223           889


Q ss_pred             hhhHHHHHHhhHHHHHHHHHHHHHHHHh
Q 012561          356 SSEDLEARCASQSNQIRSLSDQLAAAEE  383 (461)
Q Consensus       356 k~~~LEetCssQ~eqI~~Lq~QLa~A~e  383 (461)
                      |...||..-+.-.++|..|+.||+--+.
T Consensus       311 klselE~~n~~L~~~I~dL~~ql~e~~r  338 (546)
T KOG0977|consen  311 KLSELESRNSALEKRIEDLEYQLDEDQR  338 (546)
T ss_pred             hhccccccChhHHHHHHHHHhhhhhhhh
Confidence            9999999999999999999999876543

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=96.45  E-value=3.6  Score=50.51  Aligned_cols=211  Identities=21%  Similarity=0.249  Sum_probs=103.8

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhHh--------------HHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhh---
Q 012561          212 RSHASLSEDLGKAQEELQSANQRIAS--------------INDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGE---  274 (461)
Q Consensus       212 ~~~~~LseeL~k~q~E~~~anqqi~s--------------lqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~e---  274 (461)
                      +....+..+|++...+..=|..++.+              |..-|+-||.|...=+|-+..+=.+|..+++.++++.   
T Consensus       668 ~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev  747 (1822)
T KOG4674|consen  668 KEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAEL  747 (1822)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            33344444555554444444444444              4445555666666666666677777777777666654   


Q ss_pred             ----hHHHHHHHhhhhhhhh-------hhhHHHHHHHhHhhHH------HHH-----HhhHHHHHHHHHHHHHHhhhhhh
Q 012561          275 ----KEKSAIVENLSTLRGQ-------YISLQEQLSTYKASQD------EAM-----RQKDALVHEVASMRVELQQVRDD  332 (461)
Q Consensus       275 ----KEK~tivEnls~LrG~-------~~SLq~QL~~skaSq~------Ea~-----kQK~~L~~Ev~~LR~ELqqvRdD  332 (461)
                          +||..+..+=..|...       +.+|+.-|+...+.+.      .|+     .+.+.|.+++.-||.+|+.-++|
T Consensus       748 ~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~  827 (1822)
T KOG4674|consen  748 SNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSD  827 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3444443332222221       1222222222222111      111     35577888888888777766555


Q ss_pred             hhhhHHHHHHHHHHHH-HhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhh--------hhhhh----hh
Q 012561          333 RDHQLSQVQALTAEVI-KHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSA--------LETKT----EF  399 (461)
Q Consensus       333 RDr~~~QvqsL~aE~~-~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa--------~etrt----e~  399 (461)
                      +-..-.....=..+.. ...+++.....+=+--++++..|..|+.++.--+.+|+-.+.-.        .+.-+    .+
T Consensus       828 ~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~L  907 (1822)
T KOG4674|consen  828 LRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTL  907 (1822)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHH
Confidence            4332221111000000 01113333334445566777778888888777777776543211        11111    12


Q ss_pred             HHhHHHHHHHHHhHHHHhhhhhh
Q 012561          400 EGQKKLINELRNHLEDAEYKLIE  422 (461)
Q Consensus       400 E~Qk~~i~eLq~RLadaE~kiiE  422 (461)
                      ..=...+.+|..+|.+|..+|-+
T Consensus       908 r~~~eq~~~l~~~L~~a~s~i~~  930 (1822)
T KOG4674|consen  908 RKELEEITDLKEELTDALSQIRE  930 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            22234555666777777766654

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.37  E-value=2.8  Score=48.22  Aligned_cols=180  Identities=22%  Similarity=0.292  Sum_probs=120.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhh---ccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhh
Q 012561          216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ---KDIDAAHESIKRGEKEKSAIVENLSTLRGQYI  292 (461)
Q Consensus       216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQ---aDl~~~~e~~~r~eKEK~tivEnls~LrG~~~  292 (461)
                      .+...-+|-|.++-..|.+.+.++-   +|--.|--+||.-.+||   .|++++...|.-+-|-...++-.++.|.-..+
T Consensus       420 em~~Qk~reqe~iv~~nak~~ql~~---eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarik  496 (1118)
T KOG1029|consen  420 EMLNQKNREQEWIVYLNAKKKQLQQ---ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIK  496 (1118)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            3444555555665555555555443   44445667888888887   58999999999999999999999999988888


Q ss_pred             hHHH---HHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhH----HHHHHHHHHHHH-hHH---hhhhhhHHH
Q 012561          293 SLQE---QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL----SQVQALTAEVIK-HKE---LAVSSEDLE  361 (461)
Q Consensus       293 SLq~---QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~----~QvqsL~aE~~~-ykE---l~~k~~~LE  361 (461)
                      .+|+   +|+--+.-.++-+||+.....+-..-..+|...|..||-..    -|+..|+.|... |.|   +.....+|-
T Consensus       497 E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk  576 (1118)
T KOG1029|consen  497 ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELK  576 (1118)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            7775   56777888899999998877766665666666666555433    344555555443 333   455555666


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHH
Q 012561          362 ARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEG  401 (461)
Q Consensus       362 etCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~  401 (461)
                      +..++|.-   ..++-..+.-.||+.+.-++.|-+.+|+.
T Consensus       577 ~~~~~q~l---ake~~yk~e~d~~ke~et~~lel~~~ke~  613 (1118)
T KOG1029|consen  577 EDVNSQQL---AKEELYKNERDKLKEAETKALELIGEKEA  613 (1118)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            66666533   34444555666777777777776666653

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.15  E-value=2.7  Score=46.11  Aligned_cols=96  Identities=21%  Similarity=0.309  Sum_probs=69.4

Q ss_pred             CCccccc--HHHHH-HHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHH
Q 012561           82 CGTIEFT--REDVE-ALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELE--------GDYAFEHERLRNALELS  150 (461)
Q Consensus        82 ~~~ieFt--redVe-ALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE--------~~y~~EqekL~~~Le~~  150 (461)
                      ..+|.-+  +|-.| ..||-|..     +|-+|.-+|=.=..+|..=|.-|+..-        ..|-.|+-.++..|+.+
T Consensus        30 as~ir~sR~rEK~El~~LNDRLA-----~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~  104 (546)
T KOG0977|consen   30 ASPIRDSREREKKELQELNDRLA-----VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDET  104 (546)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHH
Confidence            3455555  33333 68999998     888999999888899999998888754        45788999999999999


Q ss_pred             HhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561          151 EQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL  186 (461)
Q Consensus       151 ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L  186 (461)
                      .+.++..|....-    |..-+.+|++.+...+..+
T Consensus       105 ~~~ra~~e~ei~k----l~~e~~elr~~~~~~~k~~  136 (546)
T KOG0977|consen  105 ARERAKLEIEITK----LREELKELRKKLEKAEKER  136 (546)
T ss_pred             HHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHH
Confidence            9999988876554    3344445555555554333

>PRK11281 hypothetical protein; Provisional

Probab=96.14  E-value=4.1  Score=47.97  Aligned_cols=80  Identities=19%  Similarity=0.221  Sum_probs=60.6

Q ss_pred             hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHH-----HHHHHHHhHHHHhhhhhhhHHhH
Q 012561          353 LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK-----LINELRNHLEDAEYKLIEGEKLR  427 (461)
Q Consensus       353 l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~-----~i~eLq~RLadaE~kiiEGEkLR  427 (461)
                      ++.+.|.|-..-.--++++..+.+.+..-+|.+.+-..|..-.+.=|..+..     .+++|.++.||.-.+.++=+..|
T Consensus       297 ~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~l~~~l~~q~~~LP~~~~~~~l~~~iAdlrl~~f~~~q~~  376 (1113)
T PRK11281        297 ATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLLLSRILYQQQQALPSADLIEGLADRIADLRLEQFEINQQR  376 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            5556666655444555677778888888889999999999999988877665     46779999998888888877777


Q ss_pred             Hhhhh
Q 012561          428 KRLHN  432 (461)
Q Consensus       428 KKLHN  432 (461)
                      ..|++
T Consensus       377 ~~l~~  381 (1113)
T PRK11281        377 DALFQ  381 (1113)
T ss_pred             HHhcC
Confidence            66654

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.11  E-value=0.42  Score=42.27  Aligned_cols=117  Identities=19%  Similarity=0.277  Sum_probs=69.0

Q ss_pred             HHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 012561          264 DAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL  343 (461)
Q Consensus       264 ~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL  343 (461)
                      ......+.++..........+..++....+......-+...-.-.+-.+-+.+.++..||.+++.++......-..+.+.
T Consensus         6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a   85 (132)
T PF07926_consen    6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESA   85 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444445444444333333333333333333555556667777777777777766666666666666


Q ss_pred             HHHHHHhHH--------hhhhhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561          344 TAEVIKHKE--------LAVSSEDLEARCASQSNQIRSLSDQLAA  380 (461)
Q Consensus       344 ~aE~~~ykE--------l~~k~~~LEetCssQ~eqI~~Lq~QLa~  380 (461)
                      ...+...+.        |......++.+|.--..|=+.|-.||..
T Consensus        86 ~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~  130 (132)
T PF07926_consen   86 KAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES  130 (132)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            666654444        6777788888888888888888888764

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.11  E-value=1.7  Score=50.82  Aligned_cols=178  Identities=17%  Similarity=0.250  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHH---HHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHH
Q 012561          136 YAFEHERLRNALELSEQKCAEMELALRNKEEELNLII---VELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMER  212 (461)
Q Consensus       136 y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i---~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~  212 (461)
                      +-.+.++..+.++.++++..++|+++-....|-+..=   .++|+.+.-+--....++.+.-.+-.++.+-+...-..++
T Consensus       300 l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k  379 (1074)
T KOG0250|consen  300 LQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEK  379 (1074)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555666666666666666655555554433   3333333333334445555555555555555555555555


Q ss_pred             HHhhhHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhh
Q 012561          213 SHASLSEDL-GKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY  291 (461)
Q Consensus       213 ~~~~LseeL-~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~  291 (461)
                      -.+.+.+++ +.++.       ++..++|=++.|+.=+--||--++.|-..+....+.+...+.|+.+|-.-+.+|+-..
T Consensus       380 ~I~~~~~~~~~~~~~-------~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i  452 (1074)
T KOG0250|consen  380 QIADLEKQTNNELGS-------ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI  452 (1074)
T ss_pred             HHHHHHHHHHhhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            544444444 33333       3333334444444444444445556666777777778888888888877777777777


Q ss_pred             hhHHHHHHHhHhhHHHHHH----hhHHHHHHHH
Q 012561          292 ISLQEQLSTYKASQDEAMR----QKDALVHEVA  320 (461)
Q Consensus       292 ~SLq~QL~~skaSq~Ea~k----QK~~L~~Ev~  320 (461)
                      .-.+.+|...+..+...+.    ....|+.++.
T Consensus       453 ~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~  485 (1074)
T KOG0250|consen  453 ENISEELKDLKKTKTDKVSAFGPNMPQLLRAIE  485 (1074)
T ss_pred             HHHHHHHHHHHhcccchhhhcchhhHHHHHHHH
Confidence            7777777777777776664    3444555544

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.08  E-value=3  Score=45.94  Aligned_cols=198  Identities=19%  Similarity=0.222  Sum_probs=137.8

Q ss_pred             ChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Q 012561          107 NYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKL  186 (461)
Q Consensus       107 dyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L  186 (461)
                      +....++.|-++|+.|+..++-.-+--...-.+.+.+..++. ..++-.++-..-.+.++.|+..+..-..+...|+.+.
T Consensus       339 ~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qW  417 (594)
T PF05667_consen  339 ELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQW  417 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999998877666666666677766666 3444455544455667899999999999999999999


Q ss_pred             hHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHH
Q 012561          187 AKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAA  266 (461)
Q Consensus       187 ~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~  266 (461)
                      .+......+-++.++.....+.   ..-..+-.++..++.+++.....|..-+++|+.|+.=..++-+= .+=++-..--
T Consensus       418 e~~R~pL~~e~r~lk~~~~~~~---~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~-~~Rs~Yt~RI  493 (594)
T PF05667_consen  418 EKHRAPLIEEYRRLKEKASNRE---SESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD-VNRSAYTRRI  493 (594)
T ss_pred             HHHHhHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Confidence            8888877777766665444332   22333568888899999999999999999988887655444332 2233444555


Q ss_pred             HHHHhhhhhHHHHHHHhhh---hhhhhhhhHHHHHHHhHhhHHHHH
Q 012561          267 HESIKRGEKEKSAIVENLS---TLRGQYISLQEQLSTYKASQDEAM  309 (461)
Q Consensus       267 ~e~~~r~eKEK~tivEnls---~LrG~~~SLq~QL~~skaSq~Ea~  309 (461)
                      .|.++-+.|-|..|---|.   .|--..|+++.+|+-+=+-.||-+
T Consensus       494 lEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli  539 (594)
T PF05667_consen  494 LEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI  539 (594)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            6777777777776654443   344455666667776666666655

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=96.08  E-value=1.1  Score=49.23  Aligned_cols=136  Identities=20%  Similarity=0.345  Sum_probs=91.9

Q ss_pred             HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhH
Q 012561          197 LDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKE  276 (461)
Q Consensus       197 ~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKE  276 (461)
                      -+-+++|.+|+..++.-...|.+.|.|++.....+...|..|...|..--.==.+.|+|    +.+|......       
T Consensus       294 Yd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~----e~eL~el~~~-------  362 (570)
T COG4477         294 YDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKF----EKELKELESV-------  362 (570)
T ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHH----HHHHHHHHHH-------
Confidence            45678999999999999999999999999999999999999999986543333333433    2232222222       


Q ss_pred             HHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 012561          277 KSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL  343 (461)
Q Consensus       277 K~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL  343 (461)
                      =..|.++++.=.-.|++||+-|.+......+.=+....+...+.+||.+=-+.||+=+|...++.+.
T Consensus       363 ~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei  429 (570)
T COG4477         363 LDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI  429 (570)
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2234444444344566666666665555555555556677778888888888888777666655543

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.08  E-value=0.85  Score=44.90  Aligned_cols=17  Identities=24%  Similarity=0.571  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHhhhh
Q 012561          370 QIRSLSDQLAAAEEKLE  386 (461)
Q Consensus       370 qI~~Lq~QLa~A~eKLk  386 (461)
                      +|..++.++..++..+.
T Consensus       254 ~l~~~~~~l~~~~~~l~  270 (423)
T TIGR01843       254 RLAELRERLNKARDRLQ  270 (423)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            33333333333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.05  E-value=3.6  Score=46.54  Aligned_cols=132  Identities=22%  Similarity=0.331  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhh
Q 012561          121 RLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSL  200 (461)
Q Consensus       121 rLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~  200 (461)
                      +|+-|.--|++||+.|-.|.---..+.....-+|.+-|..|    ..|..-+.+-+..|+.|||.-.. +.|        
T Consensus       216 KlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~----kdl~~~l~es~~~~~qLeE~~~~-q~E--------  282 (786)
T PF05483_consen  216 KLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKI----KDLLLLLQESQDKCNQLEEKTKE-QHE--------  282 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHH----HHHHHHHHHHHHHHHHHHHHHHH-HHH--------
Confidence            56667777777777777665544444444444444444332    23445556667788888875321 111        


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHH
Q 012561          201 AREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAI  280 (461)
Q Consensus       201 ~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~ti  280 (461)
                           -.-..-..+..|..+|+.++..++.+..       +           |   -.|+.|+.++..++-.+--||.+-
T Consensus       283 -----~Lkes~~~qe~L~~eL~~~K~slq~~~~-------t-----------q---~~le~~lq~~~k~~~qlt~eKe~~  336 (786)
T PF05483_consen  283 -----NLKESNEEQEHLLQELEDIKQSLQESES-------T-----------Q---KALEEDLQQATKTLIQLTEEKEAQ  336 (786)
T ss_pred             -----HHHHhHHhHHHHHHHHHHHHHHHHHHHH-------H-----------H---HHHHHHHHHHHHHHHHHHHhHHHH
Confidence                 1112223355566666666555433211       1           1   245556666777777777777777


Q ss_pred             HHhhhhhhhhh
Q 012561          281 VENLSTLRGQY  291 (461)
Q Consensus       281 vEnls~LrG~~  291 (461)
                      ||.++..+-.-
T Consensus       337 ~Ee~nk~k~~~  347 (786)
T PF05483_consen  337 MEELNKAKAQH  347 (786)
T ss_pred             HHHHHHHHHHH
Confidence            77766555433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.05  E-value=3.7  Score=46.67  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=32.5

Q ss_pred             hhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhccc
Q 012561          394 ETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVN  440 (461)
Q Consensus       394 etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGN  440 (461)
                      .++.|...-+..+...|..|.+-+..|-.-+-=|+|=---|++||.-
T Consensus       675 k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~Errk~lEE~l~mKqe  721 (775)
T PF10174_consen  675 KLRQELDQLKAQLESSQQSLMERDQELNALEAERRKQLEEVLEMKQE  721 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45777777777888888888877766655444445555568888853

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=96.02  E-value=0.16  Score=44.93  Aligned_cols=113  Identities=26%  Similarity=0.335  Sum_probs=72.9

Q ss_pred             hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHH
Q 012561          292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI  371 (461)
Q Consensus       292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI  371 (461)
                      .+|+..+...+....++..+-..+..++.....-.+.+.+.          ...|+.+.-+.+.....|.+.++.-..+|
T Consensus         6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~----------YE~El~~Ha~~~~~L~~lr~e~~~~~~~~   75 (132)
T PF07926_consen    6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQK----------YERELVKHAEDIKELQQLREELQELQQEI   75 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444333333222          34455555556667777778888888899


Q ss_pred             HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHh
Q 012561          372 RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAE  417 (461)
Q Consensus       372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE  417 (461)
                      ..|+.....|+..|.-+..|..+.+..|+..   |.+++.|+.|..
T Consensus        76 ~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e---~~~~~~r~~dL~  118 (132)
T PF07926_consen   76 NELKAEAESAKAELEESEASWEEQKEQLEKE---LSELEQRIEDLN  118 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            9999999999999999888888888877754   566777777743

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=96.00  E-value=2  Score=43.16  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=12.6

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHH
Q 012561          136 YAFEHERLRNALELSEQKCAEMELA  160 (461)
Q Consensus       136 y~~EqekL~~~Le~~ek~~~e~E~~  160 (461)
                      |-+=...|+.-|...++-..++|.+
T Consensus        73 y~~~c~EL~~~I~egr~~~~~~E~~   97 (325)
T PF08317_consen   73 YQFSCRELKKYISEGRQIFEEIEEE   97 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555443

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=95.91  E-value=2.4  Score=43.40  Aligned_cols=207  Identities=18%  Similarity=0.290  Sum_probs=102.7

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHH----------HH
Q 012561          212 RSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSA----------IV  281 (461)
Q Consensus       212 ~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~t----------iv  281 (461)
                      .-++.+.+++..++.+..-.|..+.-   +|+-.-+|-...=-|| ..+.++..-...|.++++---|          +|
T Consensus        62 ~~rdeineev~elK~kR~ein~kl~e---L~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lv  137 (294)
T COG1340          62 EERDEINEEVQELKEKRDEINAKLQE---LRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQTSVLTPEEERELV  137 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            34556777777777777777766544   5665666666777777 8899999999999999876554          55


Q ss_pred             HhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHH
Q 012561          282 ENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLE  361 (461)
Q Consensus       282 Enls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LE  361 (461)
                      +.++.|+-.+..-+.++... ..-.+-..+-+.+..+...++.+++...++=+.+--+.-.+-.+...++.   +.+.+=
T Consensus       138 q~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rk---eade~h  213 (294)
T COG1340         138 QKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRK---EADELH  213 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            55665555443333333322 11222223333333444444444443333333333333333322222222   333333


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHhhhhhhch--hhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHh
Q 012561          362 ARCASQSNQIRSLSDQLAAAEEKLEVSDL--SALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKL  426 (461)
Q Consensus       362 etCssQ~eqI~~Lq~QLa~A~eKLk~aDl--sa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkL  426 (461)
                      +...--...|..+...+......|.=.|-  .+..+.-.--.-....++++.|..++--++-.|++|
T Consensus       214 e~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk~GekL  280 (294)
T COG1340         214 EEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKRGEKL  280 (294)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            33333333333333333333333322222  111111111111223347777777777777777776

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.91  E-value=1.2  Score=43.77  Aligned_cols=49  Identities=12%  Similarity=0.262  Sum_probs=28.3

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHh
Q 012561          305 QDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKEL  353 (461)
Q Consensus       305 q~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl  353 (461)
                      +...-.++..+..++..++.++.+.+..-+..-.++..+..++..++.|
T Consensus       139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L  187 (423)
T TIGR01843       139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKL  187 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555556666666666666655555555666666666666553

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.63  E-value=6  Score=45.86  Aligned_cols=234  Identities=23%  Similarity=0.281  Sum_probs=121.6

Q ss_pred             HHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH---HHHhhHHH-HHHHHHHHHHHhhhHHHH
Q 012561          146 ALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLA---ALDSLARE-KETRLNMERSHASLSEDL  221 (461)
Q Consensus       146 ~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~---a~~s~~kE-kEaR~~~E~~~~~LseeL  221 (461)
                      .++...+...+.+.-++--.-+|+.-.-++..++.-||-++..-|++|..   ++..+... ||+....|.    ++-+|
T Consensus        75 iie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~----~~srl  150 (1265)
T KOG0976|consen   75 IIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIEN----LNSRL  150 (1265)
T ss_pred             hhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHH
Confidence            44555555566666666666666666666666666666666666666653   33333222 333333443    33444


Q ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHH----hhhhhHH--------------------
Q 012561          222 GKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESI----KRGEKEK--------------------  277 (461)
Q Consensus       222 ~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~----~r~eKEK--------------------  277 (461)
                      .+.-.++.+--+.|-++-   +-|-.-|+-|--+|+-+|.-++.+++..    -+++|=|                    
T Consensus       151 h~le~eLsAk~~eIf~~~---~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~t  227 (1265)
T KOG0976|consen  151 HKLEDELSAKAHDIFMIG---EDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENT  227 (1265)
T ss_pred             HHHHHHHhhhhHHHHHHH---HHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            444455544444444432   2233333333333333333222222211    1122211                    


Q ss_pred             ----------HHHHHhhhhhhhhhhhHHHHH-----------------HHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 012561          278 ----------SAIVENLSTLRGQYISLQEQL-----------------STYKASQDEAMRQKDALVHEVASMRVELQQVR  330 (461)
Q Consensus       278 ----------~tivEnls~LrG~~~SLq~QL-----------------~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvR  330 (461)
                                ++=.++|.-||-...-+.+|-                 ..-.+-..+..-||+.+++|....=.+|+|.|
T Consensus       228 q~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~  307 (1265)
T KOG0976|consen  228 QKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTR  307 (1265)
T ss_pred             HHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                      122244555555555454443                 33344455667788899999888888888887


Q ss_pred             hhhhhhHHHHH-HHHHHHHHhHH------------------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561          331 DDRDHQLSQVQ-ALTAEVIKHKE------------------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE  386 (461)
Q Consensus       331 dDRDr~~~Qvq-sL~aE~~~ykE------------------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk  386 (461)
                      --=|.-..|.- -|-.|+.+.+-                  +--|.++||-.-..--.-.+.+|+.+..-.+-|+
T Consensus       308 t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elq  382 (1265)
T KOG0976|consen  308 TRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQ  382 (1265)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            66665554432 23444444433                  5566677777666666666677766665555443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.56  E-value=0.011  Score=64.32  Aligned_cols=185  Identities=28%  Similarity=0.351  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHH
Q 012561          218 SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQ  297 (461)
Q Consensus       218 seeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~Q  297 (461)
                      .+++.++..+...+-++...++.....|++=+.+||.=|..|+.-++.......   ......---++.||.+...|++.
T Consensus       178 ~~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~ql~~L~~e  254 (713)
T PF05622_consen  178 YEELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSE---EPSQHLSVELADLRAQLRRLREE  254 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCC---CcchHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555544444445555566666666666655444321100   00111111233344444444443


Q ss_pred             HHHhHhhHHHH-------------HHh----hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-------h
Q 012561          298 LSTYKASQDEA-------------MRQ----KDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------L  353 (461)
Q Consensus       298 L~~skaSq~Ea-------------~kQ----K~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-------l  353 (461)
                      |.-.-...++.             ++|    --..+.++..||.||.-+|...|    ++..|.++|.+||+       +
T Consensus       255 l~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~----r~~klE~~ve~YKkKLed~~~l  330 (713)
T PF05622_consen  255 LERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKAD----RADKLENEVEKYKKKLEDLEDL  330 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            33222111111             111    11233555666666666665555    48899999999999       8


Q ss_pred             hhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhh
Q 012561          354 AVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKL  420 (461)
Q Consensus       354 ~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~ki  420 (461)
                      ..++..|++.+..=-+++..|+++|..+..           .+...+..++.|.+|+.++.+...++
T Consensus       331 k~qvk~Lee~N~~l~e~~~~LEeel~~~~~-----------~~~qle~~k~qi~eLe~~l~~~~~~~  386 (713)
T PF05622_consen  331 KRQVKELEEDNAVLLETKAMLEEELKKARA-----------LKSQLEEYKKQIQELEQKLSEESRRA  386 (713)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999888899999999976653           45567778888888888887755443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.52  E-value=2.2  Score=42.37  Aligned_cols=119  Identities=19%  Similarity=0.292  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561          167 ELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ  246 (461)
Q Consensus       167 EL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ  246 (461)
                      .|...+..|.....+-++-|.+.++++-++.+.+..=..+-..++..-..+..||.++..-+.++..++..+-    ..-
T Consensus        14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~----~~~   89 (239)
T COG1579          14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK----DER   89 (239)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cHH
Confidence            4555555555555566666666666666666666555555555555555555555555555555544443332    223


Q ss_pred             HHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHH
Q 012561          247 EYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQ  297 (461)
Q Consensus       247 EYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~Q  297 (461)
                      +||        .|+.+.+++.+.+..++.|=+-+++-...|.+...+++..
T Consensus        90 e~~--------aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~  132 (239)
T COG1579          90 ELR--------ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER  132 (239)
T ss_pred             HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333        3445555555555555544444444444444444333333

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.37  E-value=3.5  Score=42.78  Aligned_cols=25  Identities=12%  Similarity=0.247  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhchhh
Q 012561          368 SNQIRSLSDQLAAAEEKLEVSDLSA  392 (461)
Q Consensus       368 ~eqI~~Lq~QLa~A~eKLk~aDlsa  392 (461)
                      +.+|..++.+|+.|+..|....+.|
T Consensus       297 ~~~l~~~~~~l~~a~~~l~~~~I~A  321 (457)
T TIGR01000       297 NQKLLELESKIKSLKEDSQKGVIKA  321 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEEC
Confidence            3466777777777777776655554

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.37  E-value=0.5  Score=46.81  Aligned_cols=120  Identities=22%  Similarity=0.301  Sum_probs=81.0

Q ss_pred             HHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561          307 EAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE  386 (461)
Q Consensus       307 Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk  386 (461)
                      .--.+++.+......-+.+|..++.+.++.-.-+.++..++..|+.   ....+       ...|+.++.+++.+.+|+ 
T Consensus        14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~---qv~~~-------e~ei~~~r~r~~~~e~kl-   82 (239)
T COG1579          14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLEN---QVSQL-------ESEIQEIRERIKRAEEKL-   82 (239)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-------HHHHHHHHHHHHHHHHHH-
Confidence            4445666666777777777777777766666666666666666655   22222       234555555555555555 


Q ss_pred             hhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccc
Q 012561          387 VSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL  441 (461)
Q Consensus       387 ~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNI  441 (461)
                          ++.-++-+|..-..-+..+++|+..+|..|.+=...+.+|-+-|..|++-|
T Consensus        83 ----~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~  133 (239)
T COG1579          83 ----SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL  133 (239)
T ss_pred             ----hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                455667778888888888888888888888888888888887777776644

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=95.28  E-value=1.6  Score=37.20  Aligned_cols=109  Identities=21%  Similarity=0.282  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhH
Q 012561          139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLS  218 (461)
Q Consensus       139 EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~Ls  218 (461)
                      |....+-+|+.-...+...+..+....++|...-..|+.++.....=|..-++....|+.....|...+...+..     
T Consensus         8 e~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~e-----   82 (126)
T PF13863_consen    8 EMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAE-----   82 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            444567788899999999999999999999999999999999999999999999999999999998877766554     


Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHh
Q 012561          219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQH  254 (461)
Q Consensus       219 eeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQ  254 (461)
                        |.+++.++..+...+.-+++....++.|..=|++
T Consensus        83 --i~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~  116 (126)
T PF13863_consen   83 --IKKLKAELEELKSEISKLEEKLEEYKKYEEFLEK  116 (126)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4555555555555666667777777788777765

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=95.21  E-value=0.65  Score=42.22  Aligned_cols=109  Identities=16%  Similarity=0.281  Sum_probs=60.5

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH
Q 012561          229 QSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA  308 (461)
Q Consensus       229 ~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea  308 (461)
                      .+.+..+...+....++++.-..+|.|+..+++++....+........+...-+.+..++..+..+...+.-..      
T Consensus        77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~------  150 (191)
T PF04156_consen   77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ------  150 (191)
T ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            33444455555555666666667777777788877777777666666666655555555555544444443333      


Q ss_pred             HHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 012561          309 MRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALT  344 (461)
Q Consensus       309 ~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~  344 (461)
                       +.-.+...++..++.++.+.+.+.++...+++.+.
T Consensus       151 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  185 (191)
T PF04156_consen  151 -KELQDSREEVQELRSQLERLQENLQQLEEKIQELQ  185 (191)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22223334455555555555555544444444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK09039 hypothetical protein; Validated

Probab=95.19  E-value=2.2  Score=43.53  Aligned_cols=46  Identities=20%  Similarity=0.262  Sum_probs=22.6

Q ss_pred             hhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhh
Q 012561          287 LRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD  332 (461)
Q Consensus       287 LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdD  332 (461)
                      |+....+|+.||+...+..+++-.+-.+....+..|..+|+..-.+
T Consensus       142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444455555555555555555433

>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A

Probab=95.15  E-value=3.2  Score=39.81  Aligned_cols=95  Identities=15%  Similarity=0.228  Sum_probs=57.1

Q ss_pred             HHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHH---HhHHHHhhh
Q 012561          343 LTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELR---NHLEDAEYK  419 (461)
Q Consensus       343 L~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq---~RLadaE~k  419 (461)
                      +..++.+|..   -.+.++.+++.|..-|..+..    +++++...= +....   .......+..|.   ....+.-..
T Consensus       195 f~~eL~k~~~---~~~~i~~~~~~Q~~ll~~i~~----~~~~~~~~~-~~~~~---~~~r~~~~~~l~~a~~~y~el~~~  263 (296)
T PF13949_consen  195 FEEELKKFDP---LQNRIQQNLSKQEELLQEIQE----ANEEFAQSR-KSDQE---QKERESALQRLEAAYDAYKELSSN  263 (296)
T ss_dssp             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHTTS---SHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh-cccHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555554   466778888888877766554    444442111 11111   122222333332   334445556


Q ss_pred             hhhhHHhHHhhhhhhhhhcccceeeeeec
Q 012561          420 LIEGEKLRKRLHNTILELEVNLSSSALFR  448 (461)
Q Consensus       420 iiEGEkLRKKLHNTILELKGNIRv~crvr  448 (461)
                      |-+|-+.=..|.+.|..|...|.-||--|
T Consensus       264 l~eG~~FY~~L~~~~~~l~~~~~~f~~~R  292 (296)
T PF13949_consen  264 LEEGLKFYNDLLEILNKLQQKVEDFCNAR  292 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77799999999999999999999998766

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=95.14  E-value=9.3  Score=45.07  Aligned_cols=148  Identities=14%  Similarity=0.148  Sum_probs=108.6

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhh
Q 012561          212 RSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQY  291 (461)
Q Consensus       212 ~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~  291 (461)
                      +.+--|+.+.+-++..+...-++...++|..|-|+.=+--||+-++.++.-++..    ++.--+++..+....-+.+.+
T Consensus       408 ke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq----~~e~e~~~q~ls~~~Q~~~et  483 (1195)
T KOG4643|consen  408 KEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ----SLENEELDQLLSLQDQLEAET  483 (1195)
T ss_pred             HHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHhHHHHHHHHHHHHHHHHH
Confidence            3334466677777788888888999999999999999999999888877655433    566667888899999999999


Q ss_pred             hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHHH
Q 012561          292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEAR  363 (461)
Q Consensus       292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEet  363 (461)
                      .-|+.+.-..+.+.++....-..|.....-|...+++.-.-=.-.-.+.+-|..++..|++    |.-++..|-.|
T Consensus       484 ~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t  559 (1195)
T KOG4643|consen  484 EELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTT  559 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9999998888999999888888888888877777766532222223445566666666666    44444444444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.09  E-value=10  Score=45.26  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=17.4

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          319 VASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       319 v~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      +..|..+|+++|...|....++..+..++..-.+
T Consensus       923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~  956 (1353)
T TIGR02680       923 VDEIRARLAETRAALASGGRELPRLAEALATAEE  956 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555555544444333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=95.08  E-value=4.9  Score=41.54  Aligned_cols=78  Identities=24%  Similarity=0.368  Sum_probs=49.7

Q ss_pred             hHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          275 KEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       275 KEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      -|+...|..|-.++-++..|+--+-+.-.--+|.+..+|....=+.+|=.||..+=-..++.+..|.+|-.|+--.+|
T Consensus       126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~e  203 (319)
T PF09789_consen  126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKE  203 (319)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Confidence            455666666666666666666666666666666666666666666666666666666555666666666666666666

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.04  E-value=7.2  Score=43.28  Aligned_cols=131  Identities=24%  Similarity=0.328  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561          167 ELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ  246 (461)
Q Consensus       167 EL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ  246 (461)
                      .--+-+.+|+.+++.||+.|.+---+|++.-.++--|........+-...|.++|+.++.-+..-++-+.+++--+   .
T Consensus       157 RAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~---d  233 (617)
T PF15070_consen  157 RALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQR---D  233 (617)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---H
Confidence            3345567999999999999999999999888888777766655544444555555555555444444455544422   2


Q ss_pred             HHHhHHHhhhh------------------------hhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHH
Q 012561          247 EYNSSLQHYNT------------------------KLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLST  300 (461)
Q Consensus       247 EYNTSLQQYNS------------------------kLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~  300 (461)
                      .|..-||||..                        .||.+-......+....+|-...-|.|..+.-++--|+.||..
T Consensus       234 q~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~  311 (617)
T PF15070_consen  234 QYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSL  311 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence            36667777753                        2222222122222233344455567788888888888888865

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.02  E-value=0.0063  Score=66.19  Aligned_cols=59  Identities=17%  Similarity=0.313  Sum_probs=0.0

Q ss_pred             hhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 012561          287 LRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTA  345 (461)
Q Consensus       287 LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~a  345 (461)
                      ++++.-.++.|+.-......+..+..+.|..|...|+.++..+..++++...+.+.|..
T Consensus       361 ~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e  419 (713)
T PF05622_consen  361 LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRE  419 (713)
T ss_dssp             -----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666667777777777777778888888888888888888888877776666654

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.98  E-value=1.2  Score=48.91  Aligned_cols=146  Identities=21%  Similarity=0.280  Sum_probs=89.8

Q ss_pred             HHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-------hhhhhhHHHHHHhhHHH
Q 012561          297 QLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------LAVSSEDLEARCASQSN  369 (461)
Q Consensus       297 QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-------l~~k~~~LEetCssQ~e  369 (461)
                      .|...+.-.++...+.+.+..|++.|..++.|+.++..+.-.....+..++.-.+-       --.-...|+.-|-+-.+
T Consensus       329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~  408 (594)
T PF05667_consen  329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQ  408 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            33333444455556667777888888888888888888888888888887775444       12334678889999899


Q ss_pred             HHHHHHHHHHHHHhhhh----hhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHh----------------HHh
Q 012561          370 QIRSLSDQLAAAEEKLE----VSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKL----------------RKR  429 (461)
Q Consensus       370 qI~~Lq~QLa~A~eKLk----~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkL----------------RKK  429 (461)
                      .+..|+.|.....-.|.    .--........++......|..+.....+.+..+-.-|.+                |.-
T Consensus       409 rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~  488 (594)
T PF05667_consen  409 RLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSA  488 (594)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence            99999988877654332    1112222222333333344444444444444333333333                333


Q ss_pred             hhhhhhhhcccce
Q 012561          430 LHNTILELEVNLS  442 (461)
Q Consensus       430 LHNTILELKGNIR  442 (461)
                      .-.-|+|+-||||
T Consensus       489 Yt~RIlEIv~NI~  501 (594)
T PF05667_consen  489 YTRRILEIVKNIR  501 (594)
T ss_pred             HHHHHHHHHHhHH
Confidence            4456999999996

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.96  E-value=3.8  Score=46.57  Aligned_cols=111  Identities=22%  Similarity=0.173  Sum_probs=63.5

Q ss_pred             HHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q 012561          159 LALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKET---RLNMERSHASLSEDLGKAQEELQSANQRI  235 (461)
Q Consensus       159 ~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEa---R~~~E~~~~~LseeL~k~q~E~~~anqqi  235 (461)
                      +.+..+++|+..+....-.+|.||+.-+..-..=|..+.....-+.+.   ..+.......|.++|+++..+...+.-.+
T Consensus       533 adLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L  612 (769)
T PF05911_consen  533 ADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMEL  612 (769)
T ss_pred             hHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778999999999999999999993322222222222211112111   13444555677777777777776666666


Q ss_pred             HhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHH
Q 012561          236 ASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHES  269 (461)
Q Consensus       236 ~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~  269 (461)
                      .+.+|.++-++-==..+.+.=..||+.|..+.+.
T Consensus       613 ~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS  646 (769)
T PF05911_consen  613 ASCQDQLESLKNQLKESEQKLEELQSELESAKES  646 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655555544433333333334555555554433

The function of this family is unknown.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=94.87  E-value=2.1  Score=38.98  Aligned_cols=129  Identities=17%  Similarity=0.220  Sum_probs=73.7

Q ss_pred             hhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHh
Q 012561          286 TLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCA  365 (461)
Q Consensus       286 ~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCs  365 (461)
                      +||--....++..+.+.+-..+.=.....+-.||.+|..-++++=++-|..-.+++.+..-+..--.   .....|    
T Consensus         4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~---~~~~~E----   76 (143)
T PF12718_consen    4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK---RKSNAE----   76 (143)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHhHH----
Confidence            3344344444444444444444444455666777888777777777666665555555443332222   111222    


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhh
Q 012561          366 SQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLI  421 (461)
Q Consensus       366 sQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kii  421 (461)
                      +-..+|..|+++|..|..+|+-+.=..-++--..+.--+.+..|..+..+-|.++=
T Consensus        77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e  132 (143)
T PF12718_consen   77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE  132 (143)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            44557888888877777777666655555555555555666666667666666653

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.81  E-value=5  Score=41.57  Aligned_cols=66  Identities=21%  Similarity=0.263  Sum_probs=38.2

Q ss_pred             hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhh---chhhhhhhhhhHHhHHHHHHHHHhHHHHhh
Q 012561          353 LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVS---DLSALETKTEFEGQKKLINELRNHLEDAEY  418 (461)
Q Consensus       353 l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~a---Dlsa~etrte~E~Qk~~i~eLq~RLadaE~  418 (461)
                      |......++..-.+...++..|+.+++..+..+.-.   ......-..+++-.+..+..+..|+++++.
T Consensus       315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~  383 (498)
T TIGR03007       315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV  383 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555555566677777776666655421   112223345666677788888888888553

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=94.59  E-value=0.28  Score=53.80  Aligned_cols=99  Identities=16%  Similarity=0.247  Sum_probs=40.7

Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHHHHHHH------hHH-----hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh---
Q 012561          322 MRVELQQVRDDRDHQLSQVQALTAEVIK------HKE-----LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV---  387 (461)
Q Consensus       322 LR~ELqqvRdDRDr~~~QvqsL~aE~~~------ykE-----l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~---  387 (461)
                      ||.++...+.+.++.-.++..|..++..      |..     |..+.|=.-.---.....+..|+..-+.-..+++.   
T Consensus       508 L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~  587 (722)
T PF05557_consen  508 LQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEE  587 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3333333333344444455566666654      222     33333333222233344555565555444444411   


Q ss_pred             -hch-hhhhhhhhhHHhHHHHHHHHHhHHHHhhhh
Q 012561          388 -SDL-SALETKTEFEGQKKLINELRNHLEDAEYKL  420 (461)
Q Consensus       388 -aDl-sa~etrte~E~Qk~~i~eLq~RLadaE~ki  420 (461)
                       .+. ........|.....-|.+|+.-++.+|.+.
T Consensus       588 ~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~  622 (722)
T PF05557_consen  588 GNSQPVDAVPTSSLESQEKEIAELKAELASAEKRN  622 (722)
T ss_dssp             TT----------------HHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence             011 111123445566666788888888877654

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=94.47  E-value=15  Score=44.25  Aligned_cols=27  Identities=22%  Similarity=0.265  Sum_probs=17.5

Q ss_pred             hhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 012561          353 LAVSSEDLEARCASQSNQIRSLSDQLA  379 (461)
Q Consensus       353 l~~k~~~LEetCssQ~eqI~~Lq~QLa  379 (461)
                      +....+.+.+.|.-=..+|..++.||.
T Consensus      1053 l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1053 LSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred             hhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            455556666666666666666666665

>PRK11281 hypothetical protein; Provisional

Probab=94.45  E-value=2.9  Score=49.15  Aligned_cols=127  Identities=16%  Similarity=0.076  Sum_probs=71.1

Q ss_pred             hhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHHHHHHh
Q 012561          272 RGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDR-DHQLSQVQALTAEVIKH  350 (461)
Q Consensus       272 r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDR-Dr~~~QvqsL~aE~~~y  350 (461)
                      .++.+-...-+.|+++-....+++.+.+.+.+...++..+...+       |..|+.....- .=.-++...|.+|...+
T Consensus       132 q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI-------~~~L~~~~~~~~~l~~~~~~~l~ae~~~l  204 (1113)
T PRK11281        132 QTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQI-------RNLLKGGKVGGKALRPSQRVLLQAEQALL  204 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHH-------HHHHhCCCCCCCcCCHHHHHHHHHHHHHH
Confidence            33334444445566666655555556555555555555444433       33343322111 11123466777777777


Q ss_pred             HHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHH-----hHHHHhhhhhh
Q 012561          351 KELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRN-----HLEDAEYKLIE  422 (461)
Q Consensus       351 kEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~-----RLadaE~kiiE  422 (461)
                      +-                 |+..+++.|..++......-+.......+.+.+...|..||+     |++++|.++=+
T Consensus       205 ~~-----------------~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~  264 (1113)
T PRK11281        205 NA-----------------QNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQE  264 (1113)
T ss_pred             HH-----------------HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66                 566666666666666666666666666677767777776664     45556665533

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=94.39  E-value=0.03  Score=61.05  Aligned_cols=105  Identities=24%  Similarity=0.301  Sum_probs=15.2

Q ss_pred             HHhhHHHHHHHHHHHHHHhhhhhhhh---------hhHHHHHHHHHHHHHhHH-hhhhhhHHHHHHhhHHHHHHHHHHHH
Q 012561          309 MRQKDALVHEVASMRVELQQVRDDRD---------HQLSQVQALTAEVIKHKE-LAVSSEDLEARCASQSNQIRSLSDQL  378 (461)
Q Consensus       309 ~kQK~~L~~Ev~~LR~ELqqvRdDRD---------r~~~QvqsL~aE~~~ykE-l~~k~~~LEetCssQ~eqI~~Lq~QL  378 (461)
                      =+|+--+.+|+..||.-|.-.-.+=.         +.+..+..|...+..|+. +...+..|+..-+.+......+...+
T Consensus       405 erq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~  484 (722)
T PF05557_consen  405 ERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAEL  484 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhh
Confidence            35566667788888877765432211         111123333333444433 44456677777777777777777777


Q ss_pred             HHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhH
Q 012561          379 AAAEEKLEVSDLSALETKTEFEGQKKLINELRNHL  413 (461)
Q Consensus       379 a~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RL  413 (461)
                      ...+..+.-.+-+.+.+...+..-+..|.+|+.-+
T Consensus       485 ~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~  519 (722)
T PF05557_consen  485 KSLKEQLSSNDRSLSSLSEELNELQKEIEELEREN  519 (722)
T ss_dssp             ---------HHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            77666666666655555555555666666665443

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.33  E-value=7.6  Score=40.35  Aligned_cols=73  Identities=15%  Similarity=0.187  Sum_probs=38.1

Q ss_pred             HHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHh-hhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          278 SAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQ-QVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       278 ~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELq-qvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      +.+...+..|++....++.+++.+++++.-  ....++...+..++.+.. .+.++.+...+++..+.+++..++.
T Consensus       239 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~  312 (457)
T TIGR01000       239 ATIQQQIDQLQKSIASYQVQKAGLTKSTAS--NYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE  312 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCccc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555556555555555554443321  112223334444443333 5556666666777777777776666

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=94.01  E-value=7.7  Score=42.06  Aligned_cols=166  Identities=19%  Similarity=0.221  Sum_probs=90.6

Q ss_pred             HHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHH-----
Q 012561          122 LRLCIKWFQ------ELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEE-----  190 (461)
Q Consensus       122 Lr~CIrWfq------elE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~kee-----  190 (461)
                      +-+||-||.      ..+..++.+.+.+...++..+.+...+.. .+...+.++..+..++..+..++..+..-+     
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~   92 (475)
T PRK10361         14 VGVAIGWLFASYQHAQQKAEQLAEREEMVAELSAAKQQITQSEH-WRAECELLNNEVRSLQSINTSLEADLREVTTRMEA   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556777865      34566777788888878777777665432 222233333333333333333333333222     


Q ss_pred             -----hhHHHHHHhhHH---------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHH----HHHHHH
Q 012561          191 -----SDKLAALDSLAR---------------EKETRLNMERSHASLSEDLGKAQEELQSANQRIASIND----MYKLLQ  246 (461)
Q Consensus       191 -----seKl~a~~s~~k---------------EkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqD----myKRLQ  246 (461)
                           .+|++.+.....               ++.. .-.+..+.+|..=|.=++..+..+.++|..+..    -|-.|.
T Consensus        93 ~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~-~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~  171 (475)
T PRK10361         93 AQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNR-RVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLA  171 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 222222221111               0000 111334444444455566666667666654432    134466


Q ss_pred             HHHhHHHhhhhhhhccHHHHHHHHhhh--------hhHHHHHHHhhhhhhh
Q 012561          247 EYNSSLQHYNTKLQKDIDAAHESIKRG--------EKEKSAIVENLSTLRG  289 (461)
Q Consensus       247 EYNTSLQQYNSkLQaDl~~~~e~~~r~--------eKEK~tivEnls~LrG  289 (461)
                      +=..+|++.|.++..|+.....+++.-        |--=..|+|..+..+|
T Consensus       172 ~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~sGL~~~  222 (475)
T PRK10361        172 HEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREG  222 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHHhCCCcC
Confidence            667889999999999999988888642        2234578888766666

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=94.00  E-value=11  Score=41.15  Aligned_cols=154  Identities=22%  Similarity=0.297  Sum_probs=107.5

Q ss_pred             HHHHc-hHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHh
Q 012561          159 LALRN-KEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIAS  237 (461)
Q Consensus       159 ~~lk~-k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~s  237 (461)
                      ++|+. |..-+--||.+|+.++.-|=|---+..-||-+.-.++..=.|+-....       ..|...+.|...+-=+++.
T Consensus       350 LQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tq-------k~LqEsr~eKetLqlelkK  422 (527)
T PF15066_consen  350 LQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQ-------KHLQESRNEKETLQLELKK  422 (527)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHH
Confidence            34442 445566788888888888888777888888887777766666554443       3455666677777777777


Q ss_pred             HHHHHHHHHH-HHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHH
Q 012561          238 INDMYKLLQE-YNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALV  316 (461)
Q Consensus       238 lqDmyKRLQE-YNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~  316 (461)
                      +--=|-+||| |-|-+||-|-.+.-=++     +.+.--.|..=||-|-.|||...      .+..++.+=.-+.|+.--
T Consensus       423 ~k~nyv~LQEry~~eiQqKnksvsqclE-----mdk~LskKeeeverLQ~lkgelE------kat~SALdlLkrEKe~~E  491 (527)
T PF15066_consen  423 IKANYVHLQERYMTEIQQKNKSVSQCLE-----MDKTLSKKEEEVERLQQLKGELE------KATTSALDLLKREKETRE  491 (527)
T ss_pred             HhhhHHHHHHHHHHHHHHhhhHHHHHHH-----HHHHhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            7778999997 99999999987665443     34455566777899999999422      333355666666777777


Q ss_pred             HHHHHHHHHHhhhh
Q 012561          317 HEVASMRVELQQVR  330 (461)
Q Consensus       317 ~Ev~~LR~ELqqvR  330 (461)
                      -|+-+|..|+|+--
T Consensus       492 qefLslqeEfQk~e  505 (527)
T PF15066_consen  492 QEFLSLQEEFQKHE  505 (527)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777777643

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=93.89  E-value=3.8  Score=45.81  Aligned_cols=125  Identities=18%  Similarity=0.253  Sum_probs=77.9

Q ss_pred             HHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHh---hHHHHHHHHHHHHHHhhhHHHHH
Q 012561          146 ALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDS---LAREKETRLNMERSHASLSEDLG  222 (461)
Q Consensus       146 ~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s---~~kEkEaR~~~E~~~~~LseeL~  222 (461)
                      .++..-+.....+..+..-..+|..+....-+.+..|+.    .+.++...-+.   |..-.-.-...+.......+.+.
T Consensus       169 ~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~----~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~  244 (670)
T KOG0239|consen  169 LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS----AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQ  244 (670)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHH
Confidence            333444444444444444444444444443333333333    22222222221   22223333445555566666689


Q ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhh
Q 012561          223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGE  274 (461)
Q Consensus       223 k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~e  274 (461)
                      .++.++..+++...++.|..+.+++++-..-+++.-++.+|+..++.+....
T Consensus       245 ~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~  296 (670)
T KOG0239|consen  245 ALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK  296 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888888888999999888877666

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=93.63  E-value=3.5  Score=38.93  Aligned_cols=67  Identities=19%  Similarity=0.370  Sum_probs=32.2

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHHH-----HHHHhHH-------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 012561          319 VASMRVELQQVRDDRDHQLSQVQALTA-----EVIKHKE-------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKL  385 (461)
Q Consensus       319 v~~LR~ELqqvRdDRDr~~~QvqsL~a-----E~~~ykE-------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKL  385 (461)
                      +..+|.+|++++.+++....+|+.+..     .......       +..+...|......++++|...+..++.....+
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666666665555554     3333333       233444444444444444444444444433333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=93.48  E-value=8.1  Score=37.69  Aligned_cols=137  Identities=25%  Similarity=0.301  Sum_probs=69.0

Q ss_pred             HHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHH
Q 012561          231 ANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMR  310 (461)
Q Consensus       231 anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~k  310 (461)
                      +.-.|..|++=|+||++=|       ++||.-+.++.+.-.++       -+-+..||+.+.|+|.-|.-          
T Consensus         6 L~~~v~dL~~~n~~L~~en-------~kL~~~ve~~ee~na~L-------~~e~~~L~~q~~s~Qqal~~----------   61 (193)
T PF14662_consen    6 LLSCVEDLQLNNQKLADEN-------AKLQRSVETAEEGNAQL-------AEEITDLRKQLKSLQQALQK----------   61 (193)
T ss_pred             HHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----------
Confidence            3445666666666666554       55556666666655554       34466777777776533333          


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhHHH-------HHHHHHHHHHhHH-----------hhhhhhHHHHHHhhHHHHHH
Q 012561          311 QKDALVHEVASMRVELQQVRDDRDHQLSQ-------VQALTAEVIKHKE-----------LAVSSEDLEARCASQSNQIR  372 (461)
Q Consensus       311 QK~~L~~Ev~~LR~ELqqvRdDRDr~~~Q-------vqsL~aE~~~ykE-----------l~~k~~~LEetCssQ~eqI~  372 (461)
                       -+++-.|++.||..+.-.-+..-..++|       -|+|.++|.++.|           +.-++..|   |    ....
T Consensus        62 -aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL---~----~~~~  133 (193)
T PF14662_consen   62 -AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL---A----TEKA  133 (193)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH---H----HhhH
Confidence             3344445555554444444433333332       3455555555554           22222222   1    1456


Q ss_pred             HHHHHHHHHHhhhhhhchhhhhhhhhh
Q 012561          373 SLSDQLAAAEEKLEVSDLSALETKTEF  399 (461)
Q Consensus       373 ~Lq~QLa~A~eKLk~aDlsa~etrte~  399 (461)
                      +||.|+-.-++=+-.-|..+++.-...
T Consensus       134 ~Lq~Ql~~~e~l~~~~da~l~e~t~~i  160 (193)
T PF14662_consen  134 TLQRQLCEFESLICQRDAILSERTQQI  160 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            677777554444444455454443333

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=93.43  E-value=0.29  Score=45.60  Aligned_cols=144  Identities=25%  Similarity=0.310  Sum_probs=25.0

Q ss_pred             HhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHH-HHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHH
Q 012561          236 ASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAI-VENLSTLRGQYISLQEQLSTYKASQDEAMRQKDA  314 (461)
Q Consensus       236 ~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~ti-vEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~  314 (461)
                      ..+=+-|.||.+....|-.-|..|+.+.........-......+. -...+.+-.....++..|+.+.-++.+-..+--.
T Consensus        20 ~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~   99 (194)
T PF08614_consen   20 AELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVE   99 (194)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            355677899999999999999999987665544222222221111 1112222333333444444444444444444444


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561          315 LVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE  386 (461)
Q Consensus       315 L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk  386 (461)
                      +..++..|+.++       -.....+..|.+++...++    +.....+....-...+..+-+|+.++..+++|+.
T Consensus       100 ~~~~l~~l~~~~-------~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~  168 (194)
T PF08614_consen  100 LNDELQELEKEL-------SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLR  168 (194)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444443       3344455566666655554    2223333333333444455555555555555553

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=93.33  E-value=2.8  Score=37.53  Aligned_cols=48  Identities=29%  Similarity=0.374  Sum_probs=27.9

Q ss_pred             HHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561          279 AIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVEL  326 (461)
Q Consensus       279 tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~EL  326 (461)
                      +.-.+=+.+.-...+|+.-|...|.||++-++|||.|.+=+..|+.+-
T Consensus         6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~   53 (107)
T PF09304_consen    6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQN   53 (107)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            333333444555566666778888888888888888666665555543

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=93.26  E-value=12  Score=38.85  Aligned_cols=186  Identities=17%  Similarity=0.246  Sum_probs=122.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561          216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ  295 (461)
Q Consensus       216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq  295 (461)
                      .|.+|+..++.|+-....+-   +..-++.-+-|-++---|-.||.++--+.|++.          .+++.-.|+.+.|.
T Consensus         3 ~Lq~eia~LrlEidtik~q~---qekE~ky~ediei~Kekn~~Lqk~lKLneE~lt----------kTi~qy~~QLn~L~   69 (305)
T PF14915_consen    3 MLQDEIAMLRLEIDTIKNQN---QEKEKKYLEDIEILKEKNDDLQKSLKLNEETLT----------KTIFQYNGQLNVLK   69 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----------HHHHHHhhhHHHHH
Confidence            35677777777776665443   233355667788888888888888877777655          35666778888888


Q ss_pred             HHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhh---------
Q 012561          296 EQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCAS---------  366 (461)
Q Consensus       296 ~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCss---------  366 (461)
                      .--+...+-.+-.-.-|+.|-.||+|.|.-|--+--|.|+..+--.  ..|++-.++       =+|-|..         
T Consensus        70 aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skr--dlelafqr~-------rdEw~~lqdkmn~d~S  140 (305)
T PF14915_consen   70 AENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKR--DLELAFQRA-------RDEWVRLQDKMNSDVS  140 (305)
T ss_pred             HHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHH--HHHHHHHHH-------hhHHHHHHHHhcchHH
Confidence            7777777777777777889999999999999888888876443322  223332222       1133333         


Q ss_pred             -HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhh
Q 012561          367 -QSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEG  423 (461)
Q Consensus       367 -Q~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEG  423 (461)
                       .+.....|-+||.-|+.|+.--..-.-.|+.-..+--=.++.+|.-|-.+..++-|=
T Consensus       141 ~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~  198 (305)
T PF14915_consen  141 NLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEI  198 (305)
T ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             334557788888888887766666666666655555555666666666665555443

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.20  E-value=4.6  Score=41.75  Aligned_cols=132  Identities=20%  Similarity=0.288  Sum_probs=94.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHH--------------hhhhhhhccHHHHHHHHhhhhhHHHHHH
Q 012561          216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQ--------------HYNTKLQKDIDAAHESIKRGEKEKSAIV  281 (461)
Q Consensus       216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQ--------------QYNSkLQaDl~~~~e~~~r~eKEK~tiv  281 (461)
                      -|+-||++.+.|...+.--+-.|+.-|.-|..=+..+.              ..|++|..-+..+.+..++++-|=..+-
T Consensus        13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr   92 (319)
T PF09789_consen   13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR   92 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888887777777766655555222222              1568888889999999999999999999


Q ss_pred             HhhhhhhhhhhhHHHHHHHhHhhH-------------------HHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 012561          282 ENLSTLRGQYISLQEQLSTYKASQ-------------------DEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQA  342 (461)
Q Consensus       282 Enls~LrG~~~SLq~QL~~skaSq-------------------~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvqs  342 (461)
                      .-+..+.|-.+.|.++++..++--                   +.+-+|...|..++.++=.|.+-+--+||-+---|+-
T Consensus        93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~R  172 (319)
T PF09789_consen   93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHR  172 (319)
T ss_pred             HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998766432                   2233344455556666666666666677777777777


Q ss_pred             HHHHH
Q 012561          343 LTAEV  347 (461)
Q Consensus       343 L~aE~  347 (461)
                      |.-|+
T Consensus       173 LN~EL  177 (319)
T PF09789_consen  173 LNHEL  177 (319)
T ss_pred             HHHHH
Confidence            76665

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.16  E-value=23  Score=41.98  Aligned_cols=146  Identities=20%  Similarity=0.236  Sum_probs=73.3

Q ss_pred             HHhhHhHHHHHH-----------HHHHHHHHHHHh---h-hhhHHHHHHHHHHHHHHHhhHHH-----------------
Q 012561          109 KERCENMMDYIK-----------RLRLCIKWFQEL---E-GDYAFEHERLRNALELSEQKCAE-----------------  156 (461)
Q Consensus       109 Kgr~EqM~dyIK-----------rLr~CIrWfqel---E-~~y~~EqekL~~~Le~~ek~~~e-----------------  156 (461)
                      ++++.-.+.||-           -|+.|=+|=.+.   | .-|-.|.-...+.|+..+.....                 
T Consensus       186 ~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d  265 (1200)
T KOG0964|consen  186 REKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVED  265 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence            456666777773           345555553322   1 13555555555555554443322                 


Q ss_pred             HHHHHHchHHHHHHHHHHHHHHHHHHHHH-------HhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 012561          157 MELALRNKEEELNLIIVELRKSFASLQEK-------LAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQ  229 (461)
Q Consensus       157 ~E~~lk~k~eEL~~~i~ELr~~~~SLqe~-------L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~  229 (461)
                      .=..++.++-||+..+.-|+..-..++..       ..+.+-.=-+.-+-.....+.|..+......+-..+..-+.|+.
T Consensus       266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~  345 (1200)
T KOG0964|consen  266 ESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELS  345 (1200)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            12234444455555555554433333332       22222222233344455566666666666666666666666666


Q ss_pred             HHHHHhHhHHHHHHHHHHHHhHHHh
Q 012561          230 SANQRIASINDMYKLLQEYNSSLQH  254 (461)
Q Consensus       230 ~anqqi~slqDmyKRLQEYNTSLQQ  254 (461)
                      ...-+-.++.|--+|+-.--.+|+|
T Consensus       346 ~I~Pky~~l~~ee~~~~~rl~~l~~  370 (1200)
T KOG0964|consen  346 KIEPKYNSLVDEEKRLKKRLAKLEQ  370 (1200)
T ss_pred             HhhhHHHHHHhHHHHHHHHHHHHHH
Confidence            6665556666555555555555554

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=92.98  E-value=16  Score=39.82  Aligned_cols=69  Identities=20%  Similarity=0.262  Sum_probs=31.6

Q ss_pred             HhhHHHHHHHHHHHHHHhhhhhhhhh--hHHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHH
Q 012561          310 RQKDALVHEVASMRVELQQVRDDRDH--QLSQVQALTAEVIKHKE----LAVSSEDLEARCASQSNQIRSLSDQL  378 (461)
Q Consensus       310 kQK~~L~~Ev~~LR~ELqqvRdDRDr--~~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QL  378 (461)
                      ++...+.+++..+..||..+..-=..  --.+++.+..++..+..    +..+...++..+..-.++|..++.++
T Consensus       391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  465 (650)
T TIGR03185       391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL  465 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666655541100  01244555555544444    33333344444443344444444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=92.97  E-value=8.4  Score=36.44  Aligned_cols=82  Identities=15%  Similarity=0.253  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHH
Q 012561          219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQL  298 (461)
Q Consensus       219 eeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL  298 (461)
                      .++...+.....+.+.|..+..-....++.-..+++.+.....++........+..+....+...+...+.....++.++
T Consensus        63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l  142 (302)
T PF10186_consen   63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQL  142 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444455555555566666666666664444444444555555555555555444444444


Q ss_pred             HH
Q 012561          299 ST  300 (461)
Q Consensus       299 ~~  300 (461)
                      ..
T Consensus       143 ~~  144 (302)
T PF10186_consen  143 AR  144 (302)
T ss_pred             HH
Confidence            43

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=92.89  E-value=12  Score=38.11  Aligned_cols=54  Identities=7%  Similarity=0.041  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhh---chhhhhhhhhhHHhHHHHHHHHHhHHHHhh
Q 012561          365 ASQSNQIRSLSDQLAAAEEKLEVS---DLSALETKTEFEGQKKLINELRNHLEDAEY  418 (461)
Q Consensus       365 ssQ~eqI~~Lq~QLa~A~eKLk~a---Dlsa~etrte~E~Qk~~i~eLq~RLadaE~  418 (461)
                      .....++..|+.+|+..+..+.-.   ......-..+++-.+..+..|-.|+.+++.
T Consensus       314 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l  370 (444)
T TIGR03017       314 RILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAAMQRYTQTRI  370 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555655555433332211   111233345778888889999999988753

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=92.82  E-value=17  Score=39.66  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=12.9

Q ss_pred             hccHHHHHHHHhhhhhHHHHHHHhhh
Q 012561          260 QKDIDAAHESIKRGEKEKSAIVENLS  285 (461)
Q Consensus       260 QaDl~~~~e~~~r~eKEK~tivEnls  285 (461)
                      +..+......+++++.|-..|=..|.
T Consensus       390 ~~~~~~~~~~~~~~e~el~~l~~~l~  415 (650)
T TIGR03185       390 QDAKSQLLKELRELEEELAEVDKKIS  415 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444455555555555555544443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.68  E-value=27  Score=41.51  Aligned_cols=98  Identities=26%  Similarity=0.296  Sum_probs=49.6

Q ss_pred             hhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhh-------hhhhhhhhHHHHHHHHHHHHHhHH----hh--
Q 012561          288 RGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQ-------VRDDRDHQLSQVQALTAEVIKHKE----LA--  354 (461)
Q Consensus       288 rG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqq-------vRdDRDr~~~QvqsL~aE~~~ykE----l~--  354 (461)
                      -++-.+|++||..+|.+..++=...+.+...+..+|.||..       ...+++.-...+..+..++.+.+-    |-  
T Consensus       391 ~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~  470 (1174)
T KOG0933|consen  391 EDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYK  470 (1174)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            34455666666666666666655555555555555544443       233444444444444444444443    11  


Q ss_pred             -hhhhHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 012561          355 -VSSEDLEARCASQSNQIRSLSDQLAAAEEKL  385 (461)
Q Consensus       355 -~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKL  385 (461)
                       ..-.+|++.-..-.+.|.-|-+.+.+-..++
T Consensus       471 ~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~  502 (1174)
T KOG0933|consen  471 IGQEEALKQRRAKLHEDIGRLKDELDRLLARL  502 (1174)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence             1222444444444456666666666665555

>PLN02939 transferase, transferring glycosyl groups

Probab=92.67  E-value=26  Score=41.28  Aligned_cols=230  Identities=23%  Similarity=0.269  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHH-HH
Q 012561          136 YAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMER-SH  214 (461)
Q Consensus       136 y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~-~~  214 (461)
                      -+.|+|.|++.+.-.+-+.+|.++.+|-.-++-  +..      .-|++.           ++.++.|--.|.+.+. .-
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~-----------~~~~~~~~~~~~~~~~~~~  221 (977)
T PLN02939        161 ILTEKEALQGKINILEMRLSETDARIKLAAQEK--IHV------EILEEQ-----------LEKLRNELLIRGATEGLCV  221 (977)
T ss_pred             HHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhcc--ccc------hhhHHH-----------HHHHhhhhhcccccccccc
Confidence            466777777777777777777766665443311  111      111221           1223333333333332 23


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhH
Q 012561          215 ASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISL  294 (461)
Q Consensus       215 ~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SL  294 (461)
                      ..|+.||+-++.|-..+.+-|..+-..                 | .+.....+.+-.++||.+-+-.++..|--.+..-
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (977)
T PLN02939        222 HSLSKELDVLKEENMLLKDDIQFLKAE-----------------L-IEVAETEERVFKLEKERSLLDASLRELESKFIVA  283 (977)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHH-----------------H-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            346677776666655555444433211                 1 1112234456678888888877777776655444


Q ss_pred             HHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhH---HHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHH
Q 012561          295 QEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL---SQVQALTAEVIKHKELAVSSEDLEARCASQSNQI  371 (461)
Q Consensus       295 q~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~---~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI  371 (461)
                      |.-..-...-|.|      .+-.-|+.|..=|......=|+.+   .|-|.|..-|.+.++.-...+.-.-    -.+-|
T Consensus       284 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  353 (977)
T PLN02939        284 QEDVSKLSPLQYD------CWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKF----SSYKV  353 (977)
T ss_pred             hhhhhhccchhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhh----hHHHH
Confidence            3333333333333      244444444443333322222211   1222222223333221111111111    12367


Q ss_pred             HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHH
Q 012561          372 RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLED  415 (461)
Q Consensus       372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLad  415 (461)
                      ..||+++...++.|+.+|-   |..+..+-....|.++|.-|..
T Consensus       354 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  394 (977)
T PLN02939        354 ELLQQKLKLLEERLQASDH---EIHSYIQLYQESIKEFQDTLSK  394 (977)
T ss_pred             HHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999988774   5556666666777777766654

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=92.50  E-value=18  Score=39.18  Aligned_cols=172  Identities=20%  Similarity=0.287  Sum_probs=112.9

Q ss_pred             HHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH-HHhHHHhhhhhhhccHHHHHHHHhhh
Q 012561          195 AALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQE-YNSSLQHYNTKLQKDIDAAHESIKRG  273 (461)
Q Consensus       195 ~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQE-YNTSLQQYNSkLQaDl~~~~e~~~r~  273 (461)
                      ..-+.+++|.+||-.+++....+...|..+...-..+...+.-|+.-|- |.+ .--..+           ...+.++.+
T Consensus       289 ~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~-L~~~e~~~~~-----------~l~~~l~~l  356 (560)
T PF06160_consen  289 QLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT-LNHNELEIVR-----------ELEKQLKEL  356 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHH-----------HHHHHHHHH
Confidence            4557889999999999999999999999988887777777766666552 221 111111           223455666


Q ss_pred             hhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHh
Q 012561          274 EKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKEL  353 (461)
Q Consensus       274 eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl  353 (461)
                      ++.-..+...+..=..-|+.++..+.......++.-++...+...|..||.+-+.+|+.=++....+....--+.+.. |
T Consensus       357 ~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~n-L  435 (560)
T PF06160_consen  357 EKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSN-L  435 (560)
T ss_pred             HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence            677777777777777778888888877777777777777888888888888888887754444444444333332211 1


Q ss_pred             hhhhhHHHHHHhhHHHHHHHHHHHHH
Q 012561          354 AVSSEDLEARCASQSNQIRSLSDQLA  379 (461)
Q Consensus       354 ~~k~~~LEetCssQ~eqI~~Lq~QLa  379 (461)
                      =--......--..-.+.|..|..+|.
T Consensus       436 PGlp~~y~~~~~~~~~~i~~l~~~L~  461 (560)
T PF06160_consen  436 PGLPEDYLDYFFDVSDEIEELSDELN  461 (560)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            11122333444444566777776665

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=92.40  E-value=11  Score=42.71  Aligned_cols=107  Identities=21%  Similarity=0.270  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Q 012561          143 LRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLG  222 (461)
Q Consensus       143 L~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~  222 (461)
                      |-.+.++.-.|..|+|.-+.-+-..|+++-+-|+..+-|-    ..-|+.||+.|.....=|=-+.++|+.|..--+-+.
T Consensus       130 LteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsr----tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R  205 (861)
T KOG1899|consen  130 LTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSR----TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLR  205 (861)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhh----hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence            3444555566677777777777777777777777666554    446888999998888778888899999998888888


Q ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhcc
Q 012561          223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKD  262 (461)
Q Consensus       223 k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaD  262 (461)
                      ..+..++..| |++.=.=.+.|||        |-.||.+-
T Consensus       206 ~se~l~qevn-~~kv~e~~~erlq--------ye~klkst  236 (861)
T KOG1899|consen  206 LSENLMQEVN-QSKVGEVVQERLQ--------YETKLKST  236 (861)
T ss_pred             hHHHHHHHHH-HHHHHHHHHHHHH--------HHhhcccc
Confidence            8999998888 5544444455654        66666653

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=92.33  E-value=11  Score=36.16  Aligned_cols=117  Identities=20%  Similarity=0.304  Sum_probs=69.1

Q ss_pred             hHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhh-hhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHH
Q 012561          293 SLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRD-DRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQI  371 (461)
Q Consensus       293 SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRd-DRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI  371 (461)
                      .|+.+|--++..-.+.-+...+.-.|+..++.+|+.... .-|+.+.....          |.-+...++..-....+.|
T Consensus        72 ~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eRee----------L~~kL~~~~~~l~~~~~ki  141 (194)
T PF15619_consen   72 VLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREE----------LQRKLSQLEQKLQEKEKKI  141 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHH----------HHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555556666677777777776543 11223332222          3334444444555556678


Q ss_pred             HHHHHHHHHHHhhhh----hhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhh
Q 012561          372 RSLSDQLAAAEEKLE----VSDLSALETKTEFEGQKKLINELRNHLEDAEYK  419 (461)
Q Consensus       372 ~~Lq~QLa~A~eKLk----~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~k  419 (461)
                      ..|+.+|..++.-+.    .--....+++++...-..-|..|..+|.+.|.+
T Consensus       142 ~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~  193 (194)
T PF15619_consen  142 QELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKERE  193 (194)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            888887776654432    333445677777777788888888888887754

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=91.91  E-value=18  Score=37.64  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=14.3

Q ss_pred             HHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          322 MRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       322 LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      |+..+..++-+.+-.-+++..|..++..+++
T Consensus       315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~  345 (498)
T TIGR03007       315 LQIELAEAEAEIASLEARVAELTARIERLES  345 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444555555555544

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=91.49  E-value=33  Score=39.94  Aligned_cols=23  Identities=0%  Similarity=-0.077  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhH
Q 012561          115 MMDYIKRLRLCIKWFQELEGDYA  137 (461)
Q Consensus       115 M~dyIKrLr~CIrWfqelE~~y~  137 (461)
                      |++-|=.+-.+-+|-..+=+-+-
T Consensus       172 il~~l~g~~~y~~~~~~l~er~k  194 (1047)
T PRK10246        172 LLEELTGTEIYGQISAMVFEQHK  194 (1047)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHH
Confidence            44444444555555555544443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=91.35  E-value=31  Score=39.37  Aligned_cols=118  Identities=27%  Similarity=0.382  Sum_probs=75.1

Q ss_pred             hhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHH-------HHH--------HhhHHHHHHHHHHHHHHhhhhhhhhhhHH
Q 012561          274 EKEKSAIVENLSTLRGQYISLQEQLSTYKASQD-------EAM--------RQKDALVHEVASMRVELQQVRDDRDHQLS  338 (461)
Q Consensus       274 eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~-------Ea~--------kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~  338 (461)
                      .+.|...+|-+--||+-...=-+|+++.|.=..       -|+        .+|-....-+.-||.||...++|.....+
T Consensus       582 d~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsS  661 (717)
T PF09730_consen  582 DKDKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSS  661 (717)
T ss_pred             cccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777777777777777777777777664322       111        13444555678899999999998877665


Q ss_pred             HHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHH---HHHHhHHH
Q 012561          339 QVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLIN---ELRNHLED  415 (461)
Q Consensus       339 QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~---eLq~RLad  415 (461)
                      -=.=+.+-                 |--=--|+..||.||++|++          |.+|==.--++-|.   .|.-||+|
T Consensus       662 lRamFa~R-----------------CdEYvtQldemqrqL~aAEd----------EKKTLNsLLRmAIQQKLaLTQRLEd  714 (717)
T PF09730_consen  662 LRAMFAAR-----------------CDEYVTQLDEMQRQLAAAED----------EKKTLNSLLRMAIQQKLALTQRLED  714 (717)
T ss_pred             HHHHHHHH-----------------HHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54444443                 33334499999999999987          33332222122221   46778888


Q ss_pred             Hhh
Q 012561          416 AEY  418 (461)
Q Consensus       416 aE~  418 (461)
                      -||
T Consensus       715 lE~  717 (717)
T PF09730_consen  715 LEF  717 (717)
T ss_pred             ccC
Confidence            664

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=91.29  E-value=5.4  Score=36.35  Aligned_cols=92  Identities=15%  Similarity=0.309  Sum_probs=52.6

Q ss_pred             hhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhh
Q 012561          257 TKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQ  336 (461)
Q Consensus       257 SkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~  336 (461)
                      ..++.++......+..+++|=..+-+-+..+.++...+++.+.....-....-..-+.+...+..++.|+...++...+.
T Consensus        77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~  156 (191)
T PF04156_consen   77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDS  156 (191)
T ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777777777777777777777777777777766666666553333333334444555555555555555333333


Q ss_pred             HHHHHHHHHHHH
Q 012561          337 LSQVQALTAEVI  348 (461)
Q Consensus       337 ~~QvqsL~aE~~  348 (461)
                      ...++.+..++.
T Consensus       157 ~~~~~~~~~~~~  168 (191)
T PF04156_consen  157 REEVQELRSQLE  168 (191)
T ss_pred             HHHHHHHHHHHH
Confidence            334444443333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=91.17  E-value=7.9  Score=44.30  Aligned_cols=183  Identities=21%  Similarity=0.256  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHH--HhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHH
Q 012561          137 AFEHERLRNALELS--EQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSH  214 (461)
Q Consensus       137 ~~EqekL~~~Le~~--ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~  214 (461)
                      .+|+.=+..+-+..  .-.-.++|.+|.+|-.++-.    ++....||+++|.--|-.=.-+++     -++...+|+  
T Consensus        74 t~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq----~eekn~slqerLelaE~~l~qs~r-----ae~lpevea--  142 (916)
T KOG0249|consen   74 TLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQ----NEEKNRSLQERLELAEPKLQQSLR-----AETLPEVEA--  142 (916)
T ss_pred             hHHHHHHhccCCCCCcccchHHHHHHHhCcchhhch----hHHhhhhhhHHHHHhhHhhHhHHh-----hhhhhhhHH--
Confidence            34444444443332  23345666666666655543    444556666666543322111211     122222222  


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhH
Q 012561          215 ASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISL  294 (461)
Q Consensus       215 ~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SL  294 (461)
                       .|.-.+.-+..-....-..+.-+.-+|--+|+-|++||--|-++--..+-+.    +                + +.-.
T Consensus       143 -el~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~----r----------------l-sdtv  200 (916)
T KOG0249|consen  143 -ELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNK----R----------------L-SDTV  200 (916)
T ss_pred             -HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----c----------------c-cccc
Confidence             2222222222222333345677888899999999999988876643332221    1                1 1111


Q ss_pred             HHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          295 QEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       295 q~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      -+-|+.+.--...|+..|+.|..|+.+++.-|.+.+-|+|++......|.+++...++
T Consensus       201 dErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~  258 (916)
T KOG0249|consen  201 DERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR  258 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            1455566566666888999999999999999999999999999999999999887663

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=90.82  E-value=22  Score=40.71  Aligned_cols=180  Identities=18%  Similarity=0.218  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHH
Q 012561          218 SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQ  297 (461)
Q Consensus       218 seeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~Q  297 (461)
                      ++-.-.++.++..+.+-..--.|+-+-.+|..+.|+-+-+. ...+       ..+.-+++.|=.++....++...+...
T Consensus       512 sEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~-~~SL-------qDv~s~~sEIK~~f~~~ss~e~E~~~~  583 (769)
T PF05911_consen  512 SEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSN-CFSL-------QDVSSMRSEIKKNFDGDSSSEAEINSE  583 (769)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHc-cchH-------HHHHHHHHHHHHhhhhcccccccccch
Confidence            44455556677777777777777888899999988877553 1111       115567777777777777766555444


Q ss_pred             HHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHH
Q 012561          298 LSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQ  377 (461)
Q Consensus       298 L~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~Q  377 (461)
                      ...-.....+-..+-+.+..|-..|-++|..+-|       +++++..   .++|+..+..+|...+.+.++-=..++.|
T Consensus       584 dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d-------~lE~~~~---qL~E~E~~L~eLq~eL~~~keS~s~~E~q  653 (769)
T PF05911_consen  584 DEADTSEKKELEEELEKLESEKEELEMELASCQD-------QLESLKN---QLKESEQKLEELQSELESAKESNSLAETQ  653 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4222222222222333333333333333333322       2222222   22334444444444444444444555555


Q ss_pred             HHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHH
Q 012561          378 LAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLED  415 (461)
Q Consensus       378 La~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLad  415 (461)
                      |.+.+++.+..+..+-.+.+|...-...|..|+.-|.+
T Consensus       654 l~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~  691 (769)
T PF05911_consen  654 LKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEK  691 (769)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555544

The function of this family is unknown.

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=90.64  E-value=41  Score=39.54  Aligned_cols=204  Identities=15%  Similarity=0.190  Sum_probs=106.5

Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHh
Q 012561          192 DKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIK  271 (461)
Q Consensus       192 eKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~  271 (461)
                      .|.---.+.++=-+|+..++..--.|+-+..-++.++..+.-++.++.|.-.-|-.--.-+=--=.++|--+.++.+.+.
T Consensus       303 lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elq  382 (1265)
T KOG0976|consen  303 LKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQ  382 (1265)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            34444455566667777777777778888888888888888888887775443332111111111122223333444444


Q ss_pred             hhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhh---hhhhhhhHHHHHHHHHHHH
Q 012561          272 RGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQV---RDDRDHQLSQVQALTAEVI  348 (461)
Q Consensus       272 r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqv---RdDRDr~~~QvqsL~aE~~  348 (461)
                      ++--+-+..-|.|..|+.|.-++.           -.-+-+++..||+..--.-|.+.   +-|=|.|++-.++|..--.
T Consensus       383 sL~~l~aerqeQidelKn~if~~e-----------~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~ae  451 (1265)
T KOG0976|consen  383 SLLELQAERQEQIDELKNHIFRLE-----------QGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAE  451 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh-----------hccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhh
Confidence            444444444444444444433332           12233333333333322222222   3345677777777654322


Q ss_pred             HhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHH
Q 012561          349 KHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDA  416 (461)
Q Consensus       349 ~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLada  416 (461)
                      --.+     .++ +.|.---..|+.|+.+|+.    -+-.....-+-..+-+.|++.|+.+.+-+.+.
T Consensus       452 gsrr-----raI-eQcnemv~rir~l~~sle~----qrKVeqe~emlKaen~rqakkiefmkEeiQet  509 (1265)
T KOG0976|consen  452 GSRR-----RAI-EQCNEMVDRIRALMDSLEK----QRKVEQEYEMLKAENERQAKKIEFMKEEIQET  509 (1265)
T ss_pred             hhHh-----hHH-HHHHHHHHHHHHHhhChhh----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222     011 3455555566666666642    22335566666778888999988887766553

>smart00787 Spc7 Spc7 kinetochore protein

Probab=90.57  E-value=11  Score=38.57  Aligned_cols=121  Identities=17%  Similarity=0.275  Sum_probs=75.4

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHH----HHHHhhhhhHHHHHHHhhh
Q 012561          210 MERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAA----HESIKRGEKEKSAIVENLS  285 (461)
Q Consensus       210 ~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~----~e~~~r~eKEK~tivEnls  285 (461)
                      .+-...+|.+.++-++.+...+++++.-+++++-.|.+|-..|+.==..|+.-.+..    .+.++++..+=+....-+.
T Consensus       142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~  221 (312)
T smart00787      142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM  221 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            456677888888889999999999999999998888888777665444444322221    1122222211112222333


Q ss_pred             hhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhh
Q 012561          286 TLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR  330 (461)
Q Consensus       286 ~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvR  330 (461)
                      ..+.....++.||....+.-++...+|..+..++..++.-+.+.|
T Consensus       222 ~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r  266 (312)
T smart00787      222 IKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR  266 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            445556666677777777777777777777777766665554444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=90.21  E-value=29  Score=37.19  Aligned_cols=15  Identities=40%  Similarity=0.344  Sum_probs=8.8

Q ss_pred             hHHHHHHHHHHHHHH
Q 012561          136 YAFEHERLRNALELS  150 (461)
Q Consensus       136 y~~EqekL~~~Le~~  150 (461)
                      +-.|...++..|+..
T Consensus       121 ~~~El~~l~~~l~~l  135 (511)
T PF09787_consen  121 LDQELRRLRRQLEEL  135 (511)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            345566666666665

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=90.12  E-value=39  Score=38.52  Aligned_cols=246  Identities=20%  Similarity=0.231  Sum_probs=138.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q 012561          113 ENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESD  192 (461)
Q Consensus       113 EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keese  192 (461)
                      +-|+.|+.+|+.=+--+++.=-.++...-.|...+...+..-.+++    ..+|.+.+.++..++.-..|.    +--++
T Consensus        51 ~~L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~----~~le~~~~d~eki~~~~~~l~----~~la~  122 (698)
T KOG0978|consen   51 DELAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELE----QQLEDLQADLEKIRRRSNKLN----KHLAE  122 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH----HhHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence            3455666666655555555545555555555555555555554443    344566666666655444333    33333


Q ss_pred             HHHHHHh---------------------hHHHHHH-HHH-------HHHH---HhhhHHHHHHHHHHHHHHHHHhHhHHH
Q 012561          193 KLAALDS---------------------LAREKET-RLN-------MERS---HASLSEDLGKAQEELQSANQRIASIND  240 (461)
Q Consensus       193 Kl~a~~s---------------------~~kEkEa-R~~-------~E~~---~~~LseeL~k~q~E~~~anqqi~slqD  240 (461)
                      .....-+                     +.++.+. +..       .+++   .+.+.-.+.+.+.++..++-+..+..=
T Consensus       123 ~~~~~~t~~~~~~~~~~~~t~~~t~~~~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  202 (698)
T KOG0978|consen  123 ALEHLNTYGNGNGSLSGTITVNSTELEELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETF  202 (698)
T ss_pred             HhccCCCCCCcccccCcccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3333222                     2333333 221       2222   244556778888888888999999999


Q ss_pred             HHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHH
Q 012561          241 MYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVA  320 (461)
Q Consensus       241 myKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~  320 (461)
                      .|..+| ||.+||-||  .-+|=..++.....+++-.+..++...+|+-.......+.+. .++-...|+--..-..|..
T Consensus       203 e~~~~~-~NE~l~~~~--~~~~e~~~~~~~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~-~~~in~e~~~L~Ssl~e~~  278 (698)
T KOG0978|consen  203 ELRCLQ-YNEELQRKT--MESDEAINSKKVIKLEEKLAQCVKEYEMLRKEFENNKSQNDL-FSSINREMRHLISSLQEHE  278 (698)
T ss_pred             HHHHHH-hhhhccccc--chhhhhhccchHHHHHHHHHHHHHHHHHHHHhHHHhHHhhhh-hhhHHHHHHHHHHHHHHHH
Confidence            999999 999999999  112222333345667777777788878887776666667776 6777777777666555655


Q ss_pred             HHHHHHhhhhhhhh------hhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHH
Q 012561          321 SMRVELQQVRDDRD------HQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLS  375 (461)
Q Consensus       321 ~LR~ELqqvRdDRD------r~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq  375 (461)
                      .+..+  +.|.-+|      -.-.+++++..-+..   -......|...|.....++..++
T Consensus       279 ~~l~~--~~~~~k~t~~~~~~lr~~~~s~~~~~~~---~~~~~e~l~~~~~~~~~~~~~~~  334 (698)
T KOG0978|consen  279 KLLKE--YERELKDTESDNLKLRKQHSSAADSLES---KSRDLESLLDKIQDLISQEAELS  334 (698)
T ss_pred             HHHHH--HHHHHhcccchHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHHHHHHHHHHH
Confidence            55554  2222222      122233332222211   12233445566666666666665

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=90.08  E-value=24  Score=35.94  Aligned_cols=62  Identities=19%  Similarity=0.228  Sum_probs=41.1

Q ss_pred             hhhhhhHHHHHHhh----HHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHH
Q 012561          353 LAVSSEDLEARCAS----QSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLE  414 (461)
Q Consensus       353 l~~k~~~LEetCss----Q~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLa  414 (461)
                      -..|||++=.++-.    -.+.|+.|+..-..-+.|-.-+|...++...+.......+..++..+.
T Consensus       231 tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~  296 (309)
T PF09728_consen  231 TLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIE  296 (309)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566655554433    345677788888888888888888888777777666666666555443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=90.05  E-value=15  Score=33.63  Aligned_cols=155  Identities=17%  Similarity=0.234  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHH--HHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHH
Q 012561          222 GKAQEELQSANQRIASINDMYKLLQ--EYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLS  299 (461)
Q Consensus       222 ~k~q~E~~~anqqi~slqDmyKRLQ--EYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~  299 (461)
                      -.+++.+..+..++...+++-.-|.  .| -+||==|..|..-++.=...+.++..-=...|-.|+.+|.....+...+.
T Consensus        16 ~~lk~~l~k~~~ql~~ke~lge~L~~iDF-eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~   94 (177)
T PF13870_consen   16 ITLKHQLAKLEEQLRQKEELGEGLHLIDF-EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE   94 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555544433221  22 13444455555556666667777776666777888888886666555555


Q ss_pred             HhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH--hhhhhhHHHHHHhhHHHHHHHHHHH
Q 012561          300 TYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE--LAVSSEDLEARCASQSNQIRSLSDQ  377 (461)
Q Consensus       300 ~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE--l~~k~~~LEetCssQ~eqI~~Lq~Q  377 (461)
                      ..+..       -.+...++..+|.+|.++.-+||..-.+...|....+-|.-  ||..-....+....-+..|+.|+..
T Consensus        95 ~l~~~-------l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk  167 (177)
T PF13870_consen   95 RLKQE-------LKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERK  167 (177)
T ss_pred             HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443       34455677888999999999999888888887766655432  3333322223333334445555555


Q ss_pred             HHHHHhh
Q 012561          378 LAAAEEK  384 (461)
Q Consensus       378 La~A~eK  384 (461)
                      ...++.+
T Consensus       168 ~~~l~~~  174 (177)
T PF13870_consen  168 VEILEMR  174 (177)
T ss_pred             HHHHHHh
Confidence            5555444

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=89.95  E-value=49  Score=39.41  Aligned_cols=15  Identities=27%  Similarity=0.612  Sum_probs=9.2

Q ss_pred             Cccccc-HHHHHHHHh
Q 012561           83 GTIEFT-REDVEALLS   97 (461)
Q Consensus        83 ~~ieFt-redVeALLn   97 (461)
                      |.+.=| ++||+++|.
T Consensus       154 grvVStKk~dl~~vv~  169 (1074)
T KOG0250|consen  154 GRVVSTKKEDLDTVVD  169 (1074)
T ss_pred             CccccccHHHHHHHHH
Confidence            444334 788888763

>PRK04863 mukB cell division protein MukB; Provisional

Probab=89.85  E-value=57  Score=40.00  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=12.0

Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHH
Q 012561          357 SEDLEARCASQSNQIRSLSDQLAAA  381 (461)
Q Consensus       357 ~~~LEetCssQ~eqI~~Lq~QLa~A  381 (461)
                      ...||..-.-|..++..|.++++.+
T Consensus       553 ~~~~~~~~~~~~~~~~~~~~~~~~~  577 (1486)
T PRK04863        553 EDELEQLQEELEARLESLSESVSEA  577 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344544444555555555444443

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=89.70  E-value=47  Score=38.76  Aligned_cols=70  Identities=16%  Similarity=0.295  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 012561          318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEV  387 (461)
Q Consensus       318 Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~  387 (461)
                      ++..||.+++...+.+-...+.+..+...+...-.       .......|++.+......+..++.++......|..
T Consensus       778 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  854 (1047)
T PRK10246        778 TLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQ  854 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666655554444444444333333211       01234456666666666777777777666666554

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=89.59  E-value=20  Score=34.38  Aligned_cols=140  Identities=21%  Similarity=0.232  Sum_probs=88.9

Q ss_pred             hhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhh--hhhhHHHHHHHHHHHHHh
Q 012561          273 GEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDD--RDHQLSQVQALTAEVIKH  350 (461)
Q Consensus       273 ~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdD--RDr~~~QvqsL~aE~~~y  350 (461)
                      ++..=....-.|..+.......+.+|.....+-+.+-.+-.++...+..++..|+....+  -.=.-++...|.+|....
T Consensus        83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l  162 (240)
T PF12795_consen   83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAAL  162 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHH
Confidence            333333333344444444444555555555555555555555555555555566554222  333456677788888887


Q ss_pred             HHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHH-----hHHHHhhhhhhhHH
Q 012561          351 KELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRN-----HLEDAEYKLIEGEK  425 (461)
Q Consensus       351 kEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~-----RLadaE~kiiEGEk  425 (461)
                      +-                 +|.+|+..|..+.....+.-+-.......+......+..||+     |+.++|..+=+.+.
T Consensus       163 ~~-----------------~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~~~a~~  225 (240)
T PF12795_consen  163 EA-----------------QIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQAVEEAEQ  225 (240)
T ss_pred             HH-----------------HHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77                 777777777777777777766666677777777777777765     77889999999888


Q ss_pred             hHHh
Q 012561          426 LRKR  429 (461)
Q Consensus       426 LRKK  429 (461)
                      +...
T Consensus       226 ~~~~  229 (240)
T PF12795_consen  226 LQEE  229 (240)
T ss_pred             HHHH
Confidence            8776

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=89.54  E-value=46  Score=38.47  Aligned_cols=146  Identities=18%  Similarity=0.227  Sum_probs=81.0

Q ss_pred             HHHHhhhh---hHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 012561          267 HESIKRGE---KEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQAL  343 (461)
Q Consensus       267 ~e~~~r~e---KEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL  343 (461)
                      ...|+++-   ||-.+|++-.+.   ..+-|+.-+.-.|.+.+.....-.-+..=|..+-+|+.++.|+=-+.-+-+..|
T Consensus       473 s~iIkKLRAk~ke~etl~~K~ge---~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~l  549 (961)
T KOG4673|consen  473 SAIIKKLRAKIKEAETLEEKKGE---LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAAL  549 (961)
T ss_pred             HHHHHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            34555552   333444444322   556666666666666665555555555666777777777777655554444444


Q ss_pred             HHHHHH----hHHhh---hhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHH
Q 012561          344 TAEVIK----HKELA---VSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDA  416 (461)
Q Consensus       344 ~aE~~~----ykEl~---~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLada  416 (461)
                      .+-+..    +.++.   -|-|.|+-  -.-+++-.+|=+|+.--..+|..+.-++--.--.|   ..-|.+||.||..|
T Consensus       550 e~~~~a~qat~d~a~~Dlqk~nrlkQ--dear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~---R~Ei~~LqrRlqaa  624 (961)
T KOG4673|consen  550 EAQALAEQATNDEARSDLQKENRLKQ--DEARERESMLVQQVEDLRQTLSKKEQQAARREDMF---RGEIEDLQRRLQAA  624 (961)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            443322    22211   14455541  12344555666666666666666655543221111   35799999999999


Q ss_pred             hhhh
Q 012561          417 EYKL  420 (461)
Q Consensus       417 E~ki  420 (461)
                      |..-
T Consensus       625 E~R~  628 (961)
T KOG4673|consen  625 ERRC  628 (961)
T ss_pred             HHHH
Confidence            9753

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.35  E-value=26  Score=35.36  Aligned_cols=89  Identities=21%  Similarity=0.222  Sum_probs=50.0

Q ss_pred             HHHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHH
Q 012561           89 REDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEEL  168 (461)
Q Consensus        89 redVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL  168 (461)
                      .+|+-++++..++            ++- ---||.+=-.||.-+    ..=.+-|...|+..-.....=...|...++.+
T Consensus       113 ~~d~r~~m~~q~~------------~vK-~~aRl~aK~~WYeWR----~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l  175 (325)
T PF08317_consen  113 DPDMRLLMDNQFQ------------LVK-TYARLEAKKMWYEWR----MQLLEGLKEGLEENLELLQEDYAKLDKQLEQL  175 (325)
T ss_pred             CHHHHHHHHHHHH------------HHH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666667666655            111 223555555677544    11123334444443333333445566677777


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhHH
Q 012561          169 NLIIVELRKSFASLQEKLAKEESDKL  194 (461)
Q Consensus       169 ~~~i~ELr~~~~SLqe~L~keeseKl  194 (461)
                      +.+...|+...+.|..++...++-..
T Consensus       176 ~~~~~~l~~~~~~L~~e~~~Lk~~~~  201 (325)
T PF08317_consen  176 DELLPKLRERKAELEEELENLKQLVE  201 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77888888888888777776655443

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=89.29  E-value=6.5  Score=38.47  Aligned_cols=120  Identities=27%  Similarity=0.404  Sum_probs=66.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561          216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ  295 (461)
Q Consensus       216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq  295 (461)
                      +|...|..++..+.....++..++|.+.              .=+.++..-...+.+...|...+-+.++-|......|.
T Consensus        35 ~Lr~ql~e~~~~l~~~~~~~~~l~~~~~--------------~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr  100 (202)
T PF06818_consen   35 SLRAQLRELRAELRNKESQIQELQDSLR--------------TKQLELEVCENELQRKKNEAELLREKLGQLEAELAELR  100 (202)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------HhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence            3444455555555555555555554331              12233444444444444444444455555555555555


Q ss_pred             HHHHHhH---------hhHHHHHHh-------hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          296 EQLSTYK---------ASQDEAMRQ-------KDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       296 ~QL~~sk---------aSq~Ea~kQ-------K~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      +.++...         .--++|--+       -..|..+|++||+||..-|..+|++   ...|..|=..+.|
T Consensus       101 ~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q---~~~Fe~ER~~W~e  170 (202)
T PF06818_consen  101 EELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQ---RSSFEQERRTWQE  170 (202)
T ss_pred             HHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence            5555541         112333322       4459999999999999988888765   4566666666655

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=89.18  E-value=40  Score=37.24  Aligned_cols=31  Identities=19%  Similarity=0.054  Sum_probs=16.3

Q ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012561          160 ALRNKEEELNLIIVELRKSFASLQEKLAKEE  190 (461)
Q Consensus       160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~kee  190 (461)
                      .+..+.+.....+.-|..++..+..+|...|
T Consensus       184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE  214 (754)
T TIGR01005       184 QGAAKSESNTAAADFLAPEIADLSKQSRDAE  214 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555555443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

Probab=89.15  E-value=24  Score=34.64  Aligned_cols=198  Identities=16%  Similarity=0.159  Sum_probs=117.0

Q ss_pred             HHHHHHHhhhhhccCCCChHHhhHhHHHHHHHHHH-HHHHHHHhhh-hhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHH
Q 012561           90 EDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRL-CIKWFQELEG-DYAFEHERLRNALELSEQKCAEMELALRNKEEE  167 (461)
Q Consensus        90 edVeALLnEKmk~k~KfdyKgr~EqM~dyIKrLr~-CIrWfqelE~-~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eE  167 (461)
                      +|+..++.|||.            ==-+|-|+|+- |=+|....|. +...=-..+.+.++..-..|..+-..|...+++
T Consensus        22 ~el~~f~keRa~------------iE~~Yak~L~kl~kk~~~~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~~~   89 (242)
T cd07671          22 KDVEELLKQRAQ------------AEERYGKELVQIARKAGGQTEINTLKASFDQLKQQIENIGNSHIQLAGMLREELKS   89 (242)
T ss_pred             HHHHHHHHHHHH------------HHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666666654            33578888854 4455432221 111112234445555567788888888887877


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhh---HHHHHHhhHH--------HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHh
Q 012561          168 LNLIIVELRKSFASLQEKLAKEESD---KLAALDSLAR--------EKETRLNMERSHA-SLSEDLGKAQEELQSANQRI  235 (461)
Q Consensus       168 L~~~i~ELr~~~~SLqe~L~keese---Kl~a~~s~~k--------EkEaR~~~E~~~~-~LseeL~k~q~E~~~anqqi  235 (461)
                      +......++..--.++.-+.|...-   .+..++.-.+        ++.|....+++-. .=-.|++|++.-+..+.+.+
T Consensus        90 l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK~~~K~~k~~~~~  169 (242)
T cd07671          90 LEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEKSQNKAKQCRDAA  169 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence            7777777766544444444444333   3333322222        2223233334433 23478999999999999888


Q ss_pred             HhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHH
Q 012561          236 ASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEA  308 (461)
Q Consensus       236 ~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea  308 (461)
                      ..-.+-|   +.+-.-|..||..-..|-..+-+.+-.+|.|.-.++-+      ..=..-+.|++.=++-|+.
T Consensus       170 ~~a~~~Y---~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K~------~lw~~~n~~s~~Cv~dD~~  233 (242)
T cd07671         170 TEAERVY---KQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILRN------ALWVHCNHFSMQCVKDDEL  233 (242)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHhHHHHcCcHHH
Confidence            7776655   44455556778888889999999999999887666543      3333344555555555543

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=89.14  E-value=40  Score=37.22  Aligned_cols=72  Identities=7%  Similarity=0.081  Sum_probs=43.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhhhh---chhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhh
Q 012561          360 LEARCASQSNQIRSLSDQLAAAEEKLEVS---DLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILE  436 (461)
Q Consensus       360 LEetCssQ~eqI~~Lq~QLa~A~eKLk~a---Dlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILE  436 (461)
                      ++........+...|+.+++..+.++.-.   .....+-..+++.-+..+..|..|+.++...-              --
T Consensus       343 ~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~--------------~~  408 (754)
T TIGR01005       343 LLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ--------------NY  408 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------cC
Confidence            34444555556667777776665554321   22223334677778888888888988865433              01


Q ss_pred             hcccceeee
Q 012561          437 LEVNLSSSA  445 (461)
Q Consensus       437 LKGNIRv~c  445 (461)
                      --+||||+-
T Consensus       409 ~~~~~~vi~  417 (754)
T TIGR01005       409 VPVDARVAS  417 (754)
T ss_pred             CCCCcEEec
Confidence            346888875

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.08  E-value=9.5  Score=38.68  Aligned_cols=81  Identities=27%  Similarity=0.253  Sum_probs=43.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHH
Q 012561          163 NKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMY  242 (461)
Q Consensus       163 ~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmy  242 (461)
                      ..+++|..-+.+|.+.++.|...+...+.+..+. +    +.|.  ..=+..+.+.-++...+.+..+++.|+...++-.
T Consensus        57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l-~----~eE~--~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L  129 (314)
T PF04111_consen   57 QEEEELLQELEELEKEREELDQELEELEEELEEL-D----EEEE--EYWREYNELQLELIEFQEERDSLKNQYEYASNQL  129 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444555555555555544433332221 1    1111  3344556666677777777777777777777777


Q ss_pred             HHHHHHHh
Q 012561          243 KLLQEYNS  250 (461)
Q Consensus       243 KRLQEYNT  250 (461)
                      .||+.+|.
T Consensus       130 ~~L~ktNv  137 (314)
T PF04111_consen  130 DRLRKTNV  137 (314)
T ss_dssp             HCHHT--T
T ss_pred             HHHHhcCc
Confidence            77777764

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.06  E-value=53  Score=38.49  Aligned_cols=47  Identities=21%  Similarity=0.243  Sum_probs=26.3

Q ss_pred             hhhhhhhhhhHHHHHHHhHhhHHHHHHhhHH---HHHHHHHHHHHHhhhh
Q 012561          284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDA---LVHEVASMRVELQQVR  330 (461)
Q Consensus       284 ls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~---L~~Ev~~LR~ELqqvR  330 (461)
                      .+.|+.++.-|+.||-....+|.+-+.-.++   .-+|+..+|.|-+..-
T Consensus       701 hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~  750 (970)
T KOG0946|consen  701 HSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLE  750 (970)
T ss_pred             HHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHH
Confidence            3444445555555777666666655443332   3456666666666554

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.29  E-value=51  Score=37.34  Aligned_cols=68  Identities=22%  Similarity=0.270  Sum_probs=52.7

Q ss_pred             HHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--------------HHHHHHHhHH----hhhhhhHHHHHHhhHHHH
Q 012561          309 MRQKDALVHEVASMRVELQQVRDDRDHQLSQVQA--------------LTAEVIKHKE----LAVSSEDLEARCASQSNQ  370 (461)
Q Consensus       309 ~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvqs--------------L~aE~~~ykE----l~~k~~~LEetCssQ~eq  370 (461)
                      +.+--.|-+|++-+|.+|-.|+.++||...-++.              |.+|+--||.    |.-.-.+|||---+-++|
T Consensus       106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKq  185 (772)
T KOG0999|consen  106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQ  185 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            4455678899999999999999999998766654              4567777776    777788888877776667


Q ss_pred             HHHHHH
Q 012561          371 IRSLSD  376 (461)
Q Consensus       371 I~~Lq~  376 (461)
                      +-.|++
T Consensus       186 Vs~LR~  191 (772)
T KOG0999|consen  186 VSNLRQ  191 (772)
T ss_pred             HHHHhh
Confidence            766654

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.26  E-value=5.3  Score=40.49  Aligned_cols=95  Identities=17%  Similarity=0.329  Sum_probs=62.7

Q ss_pred             hhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 012561          258 KLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL  337 (461)
Q Consensus       258 kLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~  337 (461)
                      ....|.....+.+..+++|....++.|..|......|..++.....--.+--.+-...-.+...+..++.+..++||.--
T Consensus        40 ~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~  119 (314)
T PF04111_consen   40 DSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK  119 (314)
T ss_dssp             --HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666777888888888888888887777766666666665554444444445566666667777777777777777


Q ss_pred             HHHHHHHHHHHHhHH
Q 012561          338 SQVQALTAEVIKHKE  352 (461)
Q Consensus       338 ~QvqsL~aE~~~ykE  352 (461)
                      +|++.....+.+.+.
T Consensus       120 ~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen  120 NQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            777777666666554

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=88.25  E-value=9  Score=34.41  Aligned_cols=71  Identities=23%  Similarity=0.304  Sum_probs=52.2

Q ss_pred             HHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHH
Q 012561          244 LLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDA  314 (461)
Q Consensus       244 RLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~  314 (461)
                      +|..-++++|--+..|+..++.....+..+.++|..+=-.+.+|+++..|+..-++...+.-+|+.++.++
T Consensus         6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen    6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666788888889999999999999999999999977778888887777777777777777777766655

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=88.16  E-value=20  Score=32.65  Aligned_cols=98  Identities=18%  Similarity=0.263  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhh---HHHHHHHhhhhhhhhhh
Q 012561          216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEK---EKSAIVENLSTLRGQYI  292 (461)
Q Consensus       216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eK---EK~tivEnls~LrG~~~  292 (461)
                      +|.-|.+-++.-...+..+++-+++-+..+-.=.+|||.=|+.|..|++.+.+.++.+..   +....+-+.-+|-.++.
T Consensus         4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq   83 (143)
T PF12718_consen    4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ   83 (143)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence            455566666777777888888888888888888999999999999999999888776542   22222233446777777


Q ss_pred             hHHHHHHHhHhhHHHHHHhhH
Q 012561          293 SLQEQLSTYKASQDEAMRQKD  313 (461)
Q Consensus       293 SLq~QL~~skaSq~Ea~kQK~  313 (461)
                      .|.++|+.+-....+++..-.
T Consensus        84 ~LEeele~ae~~L~e~~ekl~  104 (143)
T PF12718_consen   84 LLEEELEEAEKKLKETTEKLR  104 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            788888877777776665544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF13514 AAA_27: AAA domain

Probab=88.07  E-value=60  Score=37.91  Aligned_cols=60  Identities=27%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhh--chhhhhhhhhhHHhHHHHHHHHHh
Q 012561          353 LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVS--DLSALETKTEFEGQKKLINELRNH  412 (461)
Q Consensus       353 l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~a--Dlsa~etrte~E~Qk~~i~eLq~R  412 (461)
                      +......++..-..-..++..|..+++.++..|..-  +-++.+...+++..+..|.++-.+
T Consensus       894 l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~~~~  955 (1111)
T PF13514_consen  894 LEAELEELEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEELAEE  955 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555666666666666666665532  223444555555555555555444

>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]

Probab=88.01  E-value=51  Score=37.07  Aligned_cols=81  Identities=21%  Similarity=0.355  Sum_probs=44.8

Q ss_pred             HHHHhHHHhhHHHHHHh-----hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH----------
Q 012561          183 QEKLAKEESDKLAALDS-----LAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQE----------  247 (461)
Q Consensus       183 qe~L~keeseKl~a~~s-----~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQE----------  247 (461)
                      .+.+.-.+..|+.++.+     ..+++..   .+.....+++++.++++.+-..+.++.+..-++--|+.          
T Consensus       383 de~~~~~~~~k~~~~~~~~~~~i~~~~~~---~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s  459 (607)
T KOG0240|consen  383 DEDFSLKEEAKMSAILSEEEMSITKLKGS---LEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLS  459 (607)
T ss_pred             hhhhhHHHHHHhhhhhhhhhhhhhhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            35666566666665533     2222222   45556666777777777666666666666555443331          


Q ss_pred             ----HHhHHHhhhhhhhccHHHH
Q 012561          248 ----YNSSLQHYNTKLQKDIDAA  266 (461)
Q Consensus       248 ----YNTSLQQYNSkLQaDl~~~  266 (461)
                          -.+-+|+|.+.+|.+.+.+
T Consensus       460 ~~~~~~e~~q~e~~~~Q~~~e~~  482 (607)
T KOG0240|consen  460 STRRLYEDIQQELSEIQEENEAA  482 (607)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Confidence                1234566777777644444

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=87.73  E-value=57  Score=37.32  Aligned_cols=149  Identities=26%  Similarity=0.333  Sum_probs=106.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhH
Q 012561          215 ASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISL  294 (461)
Q Consensus       215 ~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SL  294 (461)
                      +.|...|..++.|++.+.+.+.-..-=+-||.--|+-|-.=+..|-..-....+.|+..---=..++-..+.|-.-+-||
T Consensus        30 ~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENisl  109 (717)
T PF09730_consen   30 AYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISL  109 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            45666777778888888877777777777777777666666777777777777777777666667788889999999999


Q ss_pred             HHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHH---HHhhHHHHH
Q 012561          295 QEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEA---RCASQSNQI  371 (461)
Q Consensus       295 q~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEe---tCssQ~eqI  371 (461)
                      |-|+...|.||=|    -+.+-+|+.+|-.|++..           ++=..|+...|++..+  -|||   +--.-++|-
T Consensus       110 QKqvs~Lk~sQve----fE~~Khei~rl~Ee~~~l-----------~~qlee~~rLk~iae~--qleEALesl~~EReqk  172 (717)
T PF09730_consen  110 QKQVSVLKQSQVE----FEGLKHEIKRLEEEIELL-----------NSQLEEAARLKEIAEK--QLEEALESLKSEREQK  172 (717)
T ss_pred             HHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            9999999999965    356666777766666543           3445677777773322  2333   334456777


Q ss_pred             HHHHHHHHH
Q 012561          372 RSLSDQLAA  380 (461)
Q Consensus       372 ~~Lq~QLa~  380 (461)
                      ..|+..|..
T Consensus       173 ~~LrkEL~~  181 (717)
T PF09730_consen  173 NALRKELDQ  181 (717)
T ss_pred             HHHHHHHHH
Confidence            888888875

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=87.61  E-value=71  Score=38.26  Aligned_cols=278  Identities=22%  Similarity=0.206  Sum_probs=158.4

Q ss_pred             CCCChHHhhHh----HHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhhHHHHHH---HHHchHHHHHHHHH
Q 012561          104 NKFNYKERCEN----MMDYIKRLRLCIKWFQELE---GDYAFEHERLRNALELSEQKCAEMEL---ALRNKEEELNLIIV  173 (461)
Q Consensus       104 ~KfdyKgr~Eq----M~dyIKrLr~CIrWfqelE---~~y~~EqekL~~~Le~~ek~~~e~E~---~lk~k~eEL~~~i~  173 (461)
                      -||+.--+|++    |---|++||.=|-=|+..-   +.|..|..-|.-..+..-..|.+-=.   ..|...|||+.-+-
T Consensus       195 EK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~  274 (1195)
T KOG4643|consen  195 EKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNR  274 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhH
Confidence            45555555544    3334778887776554432   34555555555555555444443221   23445555554444


Q ss_pred             HHHHHHHHHHHHHhHHHhhHHHHHH---hhHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 012561          174 ELRKSFASLQEKLAKEESDKLAALD---SLARE----KETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQ  246 (461)
Q Consensus       174 ELr~~~~SLqe~L~keeseKl~a~~---s~~kE----kEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQ  246 (461)
                      -|.....=|+++|.+     +.|=-   .++.|    +...-....-+++....++++..|.+.+.-+-..|.-.|-++|
T Consensus       275 vLleekeMLeeQLq~-----lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq  349 (1195)
T KOG4643|consen  275 VLLEEKEMLEEQLQK-----LRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQ  349 (1195)
T ss_pred             HHHHHHHHHHHHHHH-----HHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence            444444445555444     33311   11111    1223344555667777788888888888777788888888898


Q ss_pred             H-------HHhHHHhhhhhhhccH-----------------------HHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHH
Q 012561          247 E-------YNSSLQHYNTKLQKDI-----------------------DAAHESIKRGEKEKSAIVENLSTLRGQYISLQE  296 (461)
Q Consensus       247 E-------YNTSLQQYNSkLQaDl-----------------------~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~  296 (461)
                      -       -|.|+|--|-.|-+|-                       ....-.+-.++||+--|---.--|-..++-+-.
T Consensus       350 ~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~q  429 (1195)
T KOG4643|consen  350 IFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQ  429 (1195)
T ss_pred             hhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHH
Confidence            8       7899998887776621                       111111222333333222222223335555555


Q ss_pred             HHHHhHhhHHHHHHhhHHHHHHHH----------HHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHH
Q 012561          297 QLSTYKASQDEAMRQKDALVHEVA----------SMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEA  362 (461)
Q Consensus       297 QL~~skaSq~Ea~kQK~~L~~Ev~----------~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEe  362 (461)
                      |++-+..--..++..++.|..|+.          .+|+++.|+=.+=|+.+.+...|...+.+.+.    -...++.|.+
T Consensus       430 q~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a  509 (1195)
T KOG4643|consen  430 QLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHA  509 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665555554555566666666654          47888888888889999888888888888777    1122333444


Q ss_pred             HHhhHHHHHHHHHHHHHHHHhhhh
Q 012561          363 RCASQSNQIRSLSDQLAAAEEKLE  386 (461)
Q Consensus       363 tCssQ~eqI~~Lq~QLa~A~eKLk  386 (461)
                      .-+--.+|++++..|+.--.+|+.
T Consensus       510 ~~~elkeQ~kt~~~qye~~~~k~e  533 (1195)
T KOG4643|consen  510 LKNELKEQYKTCDIQYELLSNKLE  533 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445677777777776666654

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=87.52  E-value=27  Score=33.39  Aligned_cols=129  Identities=17%  Similarity=0.203  Sum_probs=71.0

Q ss_pred             hhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHH
Q 012561          291 YISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQ  370 (461)
Q Consensus       291 ~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eq  370 (461)
                      .+||+++++..|.-....-+...++..|-..|+.-|++.+.++...-.++.....+-..+..+..+...++..-..-.-.
T Consensus        29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e  108 (201)
T PF13851_consen   29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE  108 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777777777788888888888887777766555555444444444443333333333333333333


Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhH----------HHHHHHHHhHHHHhhhhh
Q 012561          371 IRSLSDQLAAAEEKLEVSDLSALETKTEFEGQK----------KLINELRNHLEDAEYKLI  421 (461)
Q Consensus       371 I~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk----------~~i~eLq~RLadaE~kii  421 (461)
                      -..|++++..-..  ..-++..-...+-++-|+          +.+..|.+.|+..+-+|-
T Consensus       109 ~evL~qr~~kle~--ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~  167 (201)
T PF13851_consen  109 HEVLEQRFEKLEQ--ERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLN  167 (201)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333332222111  122333333334444444          677788888887777664

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.42  E-value=5  Score=37.47  Aligned_cols=123  Identities=17%  Similarity=0.263  Sum_probs=51.3

Q ss_pred             HHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHH
Q 012561          230 SANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAM  309 (461)
Q Consensus       230 ~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~  309 (461)
                      ....++.++++..-.+|+=.+.++.=++-|+.-+......+..++++=..--..|..|+....+|+..+........+--
T Consensus        64 ~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~  143 (194)
T PF08614_consen   64 VSSAQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN  143 (194)
T ss_dssp             --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778888888888888888888888988888888888888887777777788888888888888877777777777


Q ss_pred             HhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          310 RQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       310 kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      +--+.|.+|+..|..++-.+-+-.++.-.+=..|-.....+|.
T Consensus       144 k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~  186 (194)
T PF08614_consen  144 KANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA  186 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777888888888887776666555555555555444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=87.30  E-value=72  Score=38.01  Aligned_cols=196  Identities=21%  Similarity=0.322  Sum_probs=117.2

Q ss_pred             HHHHHhHHHhhHHHHHHhhHHHHH-HHHHHHHHH----------hhhHHHHHHHHHHH---------------HHHHHHh
Q 012561          182 LQEKLAKEESDKLAALDSLAREKE-TRLNMERSH----------ASLSEDLGKAQEEL---------------QSANQRI  235 (461)
Q Consensus       182 Lqe~L~keeseKl~a~~s~~kEkE-aR~~~E~~~----------~~LseeL~k~q~E~---------------~~anqqi  235 (461)
                      .+++.+.|.++-.++|+-..=+|| |-.-++.+|          ++|+.||+=++.|.               +.+.+|-
T Consensus       298 ~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN  377 (1243)
T KOG0971|consen  298 AKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQN  377 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHH
Confidence            345666677777777766555554 222233333          45677777776654               4566666


Q ss_pred             HhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhH-------------
Q 012561          236 ASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYK-------------  302 (461)
Q Consensus       236 ~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~sk-------------  302 (461)
                      .-|-|..=||-..|.+=-|---|||..++.-+-.+..+..-|--+-.-+..+--....||+|.|.+.             
T Consensus       378 ~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdkn  457 (1243)
T KOG0971|consen  378 ARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKN  457 (1243)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhc
Confidence            6777777777778888778888999999888877777766665555555566666667777766553             


Q ss_pred             hhHHHHHHhhHHHHHHHHH------------------HHHHHhhhhhhh-------hhhHHHHHHHHHHHHHhHHhhhhh
Q 012561          303 ASQDEAMRQKDALVHEVAS------------------MRVELQQVRDDR-------DHQLSQVQALTAEVIKHKELAVSS  357 (461)
Q Consensus       303 aSq~Ea~kQK~~L~~Ev~~------------------LR~ELqqvRdDR-------Dr~~~QvqsL~aE~~~ykEl~~k~  357 (461)
                      --.+|.+++-++-+.+++.                  ||.||.+..--|       +-..--|-.+.--|.||+||+++.
T Consensus       458 lnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~L  537 (1243)
T KOG0971|consen  458 LNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHL  537 (1243)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            2345555555544444333                  444444442222       112222333444567778777765


Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHhhhhh
Q 012561          358 EDLEARCASQSNQIRSLSDQLAAAEEKLEV  387 (461)
Q Consensus       358 ~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~  387 (461)
                      ++          ||..+.+|-....+-+.-
T Consensus       538 qd----------qlqe~~dq~~Sseees~q  557 (1243)
T KOG0971|consen  538 QD----------QLQELTDQQESSEEESQQ  557 (1243)
T ss_pred             HH----------HHHHHHhhhhhhHHHhcC
Confidence            53          677776665555554443

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=87.08  E-value=38  Score=37.43  Aligned_cols=84  Identities=27%  Similarity=0.350  Sum_probs=58.2

Q ss_pred             HHHHHHHhHHHhhhhhhhccHH---HHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHH
Q 012561          243 KLLQEYNSSLQHYNTKLQKDID---AAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEV  319 (461)
Q Consensus       243 KRLQEYNTSLQQYNSkLQaDl~---~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev  319 (461)
                      +|+-+-.+.||.+.||.-.=..   .....+.-.+++|.++.+.|..+.|.++.|||.|.+.+.+=++   |-..+..-|
T Consensus       420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~---QLs~MSEHL  496 (518)
T PF10212_consen  420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEE---QLSMMSEHL  496 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHH
Confidence            4666667777777777654333   3334455557888899999999999999999999999888765   444555556


Q ss_pred             HHHHHHHhhh
Q 012561          320 ASMRVELQQV  329 (461)
Q Consensus       320 ~~LR~ELqqv  329 (461)
                      .+|...|-.-
T Consensus       497 asmNeqL~~Q  506 (518)
T PF10212_consen  497 ASMNEQLAKQ  506 (518)
T ss_pred             HHHHHHHHHH
Confidence            6655554433

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=86.92  E-value=60  Score=36.72  Aligned_cols=84  Identities=18%  Similarity=0.216  Sum_probs=39.5

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHH
Q 012561          193 KLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSA-----NQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAH  267 (461)
Q Consensus       193 Kl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~a-----nqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~  267 (461)
                      =..+|.-+++-..-...+|+.-..|..+|.++.+....+     ++....|+-+-+-.+.-++++|+-=+.|+-...+-.
T Consensus       237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~  316 (629)
T KOG0963|consen  237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHK  316 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444445555555555555555555554443     112222222222233335555555555555555555


Q ss_pred             HHHhhhhhH
Q 012561          268 ESIKRGEKE  276 (461)
Q Consensus       268 e~~~r~eKE  276 (461)
                      ..|+.|+++
T Consensus       317 ~qI~~le~~  325 (629)
T KOG0963|consen  317 AQISALEKE  325 (629)
T ss_pred             HHHHHHHHH
Confidence            555555544

>PF15294 Leu_zip: Leucine zipper

Probab=86.85  E-value=40  Score=34.58  Aligned_cols=146  Identities=19%  Similarity=0.301  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHH--HHHHhhhhhhhhhhhH
Q 012561          217 LSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKS--AIVENLSTLRGQYISL  294 (461)
Q Consensus       217 LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~--tivEnls~LrG~~~SL  294 (461)
                      |..|+.+++.|-..+..++.+++..+--.-+=++       +|++.|-..........--++  .=...++.|-.....|
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~-------kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~l  202 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKS-------KLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAAL  202 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHH
Confidence            6666666666666666666666654432222222       222222111110000000010  1112334444444444


Q ss_pred             HHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHH
Q 012561          295 QEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSL  374 (461)
Q Consensus       295 q~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~L  374 (461)
                      +.+|.-+   ..+-..+.++|-..|.+-..+|..|.+.-+..-..+..      +|.+ +.--..+-+--+..++||+.|
T Consensus       203 K~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLek------Kfqq-T~ay~NMk~~ltkKn~QiKeL  272 (278)
T PF15294_consen  203 KSELEKA---LQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEK------KFQQ-TAAYRNMKEILTKKNEQIKEL  272 (278)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHH------HhCc-cHHHHHhHHHHHhccHHHHHH
Confidence            4444432   33334455667777777777777777663332222222      2222 222333445567778899999


Q ss_pred             HHHHH
Q 012561          375 SDQLA  379 (461)
Q Consensus       375 q~QLa  379 (461)
                      +..|.
T Consensus       273 Rkrl~  277 (278)
T PF15294_consen  273 RKRLA  277 (278)
T ss_pred             HHHhc
Confidence            98874

>smart00787 Spc7 Spc7 kinetochore protein

Probab=86.64  E-value=41  Score=34.48  Aligned_cols=123  Identities=16%  Similarity=0.181  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhH----HHHH
Q 012561          223 KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISL----QEQL  298 (461)
Q Consensus       223 k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SL----q~QL  298 (461)
                      |++....=..=+.+.++++...|.+.=..||.=...|=.+++.+.+..-.+...++.+..-+..|+-...-+    ++.|
T Consensus       127 Rl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL  206 (312)
T smart00787      127 RLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTEL  206 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHH
Confidence            333333344446667788888888887777776666777777777777777777777777777666544433    2233


Q ss_pred             HHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          299 STYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       299 ~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      ..+|....+       +..|+...|.+|.++++.....-+.+++.......+.+
T Consensus       207 ~~lk~~l~~-------~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~  253 (312)
T smart00787      207 DRAKEKLKK-------LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT  253 (312)
T ss_pred             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333332222       23344444555555555544444555555555555444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=86.53  E-value=33  Score=34.45  Aligned_cols=94  Identities=20%  Similarity=0.201  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhH
Q 012561          139 EHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLS  218 (461)
Q Consensus       139 EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~Ls  218 (461)
                      |.++|+.+.+..-+...|++.....-+.++..+.+.|...-.-...+   ....+.+-++.+.++-+ +...+.+..-+.
T Consensus        44 e~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~---~~k~~~dF~~~Lq~~Lk-~V~tde~k~~~~  119 (230)
T PF03904_consen   44 EIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDK---TEKVHNDFQDILQDELK-DVDTDELKNIAQ  119 (230)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-hhchHHHHHHHH
Confidence            78899999999999999999999999999998888776644444433   33444444444433322 224444444455


Q ss_pred             HHHHHHHHHHHHHHHHhH
Q 012561          219 EDLGKAQEELQSANQRIA  236 (461)
Q Consensus       219 eeL~k~q~E~~~anqqi~  236 (461)
                      .|+-+++.|..+.-+.++
T Consensus       120 ~ei~k~r~e~~~ml~evK  137 (230)
T PF03904_consen  120 NEIKKVREENKSMLQEVK  137 (230)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555555554444433

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=86.17  E-value=73  Score=36.96  Aligned_cols=77  Identities=21%  Similarity=0.208  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHH
Q 012561          239 NDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHE  318 (461)
Q Consensus       239 qDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~E  318 (461)
                      +...+++|--=++---||+++|++++...+.       -.++.-++..+||   -|  | -..+.-|++|-.+...|+--
T Consensus       522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~-------~~a~qat~d~a~~---Dl--q-k~nrlkQdear~~~~~lvqq  588 (961)
T KOG4673|consen  522 QETIEKHQAELTRQKDYYSNSRALAAALEAQ-------ALAEQATNDEARS---DL--Q-KENRLKQDEARERESMLVQQ  588 (961)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-------HHHHHHhhhhhhh---hH--H-HHhhhhhhHHHHHHHHHHHH
Confidence            3333444444444456777777776554332       2344445555555   11  1 12233477777777777777


Q ss_pred             HHHHHHHHhh
Q 012561          319 VASMRVELQQ  328 (461)
Q Consensus       319 v~~LR~ELqq  328 (461)
                      |.-||--|+.
T Consensus       589 v~dLR~~L~~  598 (961)
T KOG4673|consen  589 VEDLRQTLSK  598 (961)
T ss_pred             HHHHHHHHHH
Confidence            7777766653

>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []

Probab=85.89  E-value=30  Score=39.20  Aligned_cols=150  Identities=23%  Similarity=0.366  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHH
Q 012561          238 INDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVH  317 (461)
Q Consensus       238 lqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~  317 (461)
                      +.+++-+||=|   .|+-|..|.....-+--.+=|+-.|=..|-.....|+++..++++.+.....+=...+.    -+.
T Consensus        36 ls~l~~kLql~---~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~----~L~  108 (766)
T PF10191_consen   36 LSSLVMKLQLY---SQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMA----QLA  108 (766)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHH----HHH
Confidence            33444444422   34446666665555555666788888888888888888888888888654332222332    356


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhh
Q 012561          318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKT  397 (461)
Q Consensus       318 Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrt  397 (461)
                      ++...+.-++..++- =+......+|.++|.             +...++  .|...-..|+..+.=|.+     +.-.-
T Consensus       109 ~ld~vK~rm~~a~~~-L~EA~~w~~l~~~v~-------------~~~~~~--d~~~~a~~l~~m~~sL~~-----l~~~p  167 (766)
T PF10191_consen  109 ELDSVKSRMEAARET-LQEADNWSTLSAEVD-------------DLFESG--DIAKIADRLAEMQRSLAV-----LQDVP  167 (766)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHhHHHHHHHHH-------------HHHhcC--CHHHHHHHHHHHHHHHHH-----HcCCC
Confidence            677777777776654 334444445555543             333222  455555566655555544     22345


Q ss_pred             hhHHhHHHHHHHHHhHHH
Q 012561          398 EFEGQKKLINELRNHLED  415 (461)
Q Consensus       398 e~E~Qk~~i~eLq~RLad  415 (461)
                      +|++.+..++.|++||+.
T Consensus       168 d~~~r~~~le~l~nrLEa  185 (766)
T PF10191_consen  168 DYEERRQQLEALKNRLEA  185 (766)
T ss_pred             chhHHHHHHHHHHHHHHH
Confidence            899999999999999987

COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].

>PF13166 AAA_13: AAA domain

Probab=85.70  E-value=58  Score=35.33  Aligned_cols=17  Identities=18%  Similarity=0.391  Sum_probs=7.9

Q ss_pred             HHHHHHHHHhHHHhhhh
Q 012561          241 MYKLLQEYNSSLQHYNT  257 (461)
Q Consensus       241 myKRLQEYNTSLQQYNS  257 (461)
                      +...++++|+.+..+|.
T Consensus       368 l~~~i~~~n~~i~~~n~  384 (712)
T PF13166_consen  368 LNSIIDELNELIEEHNE  384 (712)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444444

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=85.58  E-value=38  Score=33.13  Aligned_cols=126  Identities=14%  Similarity=0.225  Sum_probs=85.7

Q ss_pred             HHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHH
Q 012561          227 ELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQD  306 (461)
Q Consensus       227 E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~  306 (461)
                      -.............|-+-..+|...+++.-.-.|.+-..+...+.++.+||......|+.+--.++.|-....-.|..-.
T Consensus        28 l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~  107 (207)
T PF05010_consen   28 LKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIE  107 (207)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            34455566677788899999999999999999999999999999999999999999999998888888777776665422


Q ss_pred             HHHHh----hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          307 EAMRQ----KDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       307 Ea~kQ----K~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      .--+-    |+.+..-+.+++.+=|+.---++|.-.+++....|++..+-
T Consensus       108 ~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~  157 (207)
T PF05010_consen  108 GYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRS  157 (207)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111    22333333444444444444444444555555555554444

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.45  E-value=12  Score=36.08  Aligned_cols=67  Identities=16%  Similarity=0.263  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhh
Q 012561          224 AQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQ  290 (461)
Q Consensus       224 ~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~  290 (461)
                      .|..+....++-..+.+-|+.|..=..+|+-||..|+.-++.....+..++.....|..+...|.+.
T Consensus        40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~  106 (251)
T PF11932_consen   40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL  106 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555556666666666777777777777777777888887777777776666664

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=85.33  E-value=59  Score=35.14  Aligned_cols=67  Identities=24%  Similarity=0.292  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhh
Q 012561          311 QKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-LAVSSEDLEARCASQSNQIRSLSDQLAAAEEK  384 (461)
Q Consensus       311 QK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eK  384 (461)
                      +.+.+..|...=+..|.+.+.+|..-+.+.++....-.++.+ |..+...|..       .|.+++.+.+.+.|+
T Consensus       186 ~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~-------~Ias~e~~aA~~re~  253 (420)
T COG4942         186 ELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKN-------EIASAEAAAAKAREA  253 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            344555666777788889999999999988876665555544 7777766665       455555555544444

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=85.30  E-value=27  Score=31.16  Aligned_cols=100  Identities=20%  Similarity=0.371  Sum_probs=56.7

Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHh
Q 012561          304 SQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEE  383 (461)
Q Consensus       304 Sq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~e  383 (461)
                      +.+.-+.+++.|...+..++.|+.+..       ..++.|...++...-   +...+++.+.....+++.++..+...++
T Consensus        46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~-------~~~~rL~~~~~~~er---e~~~~~~~~~~l~~~~~~~~~~~k~~ke  115 (151)
T PF11559_consen   46 QRDRDMEQREDLSDKLRRLRSDIERLQ-------NDVERLKEQLEELER---ELASAEEKERQLQKQLKSLEAKLKQEKE  115 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777777777776665544       444555544444433   4445555666666666666666666555


Q ss_pred             hhhhhchhhhhhhhhhHHhHH----HHHHHHHhH
Q 012561          384 KLEVSDLSALETKTEFEGQKK----LINELRNHL  413 (461)
Q Consensus       384 KLk~aDlsa~etrte~E~Qk~----~i~eLq~RL  413 (461)
                      -+...-...--.+|.|+-..+    -|.-|++||
T Consensus       116 e~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL  149 (151)
T PF11559_consen  116 ELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL  149 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555444455555666655443    234444444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=84.66  E-value=42  Score=32.90  Aligned_cols=179  Identities=17%  Similarity=0.158  Sum_probs=103.1

Q ss_pred             HHhhHhHHHHHHHHH-HHHHHHHHh-hh-hhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHH---HHHHHHHHHH
Q 012561          109 KERCENMMDYIKRLR-LCIKWFQEL-EG-DYAFEHERLRNALELSEQKCAEMELALRNKEEELNLII---VELRKSFASL  182 (461)
Q Consensus       109 Kgr~EqM~dyIKrLr-~CIrWfqel-E~-~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i---~ELr~~~~SL  182 (461)
                      ++|..==-+|-|+|+ +|-+|-.-- |. +.-.=-..+.+.++..=..|..+-..|..-.+.+....   .+-|+.+.+-
T Consensus        29 kERA~IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~H~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~  108 (240)
T cd07672          29 KERASIEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQSHIQLAQTLRDEAKKMEDFRERQKLARKKIELI  108 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444468999998 788885311 11 11111233445555555667777776765443333333   3334444454


Q ss_pred             HHHHhHHHhhHHHHHHh----hH----HHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHH
Q 012561          183 QEKLAKEESDKLAALDS----LA----REKETRLNMERSHASL-SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQ  253 (461)
Q Consensus       183 qe~L~keeseKl~a~~s----~~----kEkEaR~~~E~~~~~L-seeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQ  253 (461)
                      -+++.|-....+..++.    |.    ++..|+....+.-... -.|++|++.-+..+.+.+....+=|   +.+...|.
T Consensus       109 ~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y---~~~v~~l~  185 (240)
T cd07672         109 MDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQNAEDADRLY---MQNISVLD  185 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence            45554444433333322    22    1223333333322222 4689999999999988887766655   45677777


Q ss_pred             hhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhh
Q 012561          254 HYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYI  292 (461)
Q Consensus       254 QYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~  292 (461)
                      .||..-..|-..+-...-.+|.|.-.++-+  +|=+|.|
T Consensus       186 ~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~--~lw~~~n  222 (240)
T cd07672         186 KIREDWQKEHVKACEFFEKQECERINFFRN--AVWTHVN  222 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence            778888888888888888888888776654  4445544

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

>PF13514 AAA_27: AAA domain

Probab=84.63  E-value=88  Score=36.56  Aligned_cols=10  Identities=30%  Similarity=0.564  Sum_probs=4.3

Q ss_pred             HHHHHHHHHH
Q 012561          369 NQIRSLSDQL  378 (461)
Q Consensus       369 eqI~~Lq~QL  378 (461)
                      .+|..++.+|
T Consensus       861 ~~~~~~~~~l  870 (1111)
T PF13514_consen  861 EELEDLERQL  870 (1111)
T ss_pred             HHHHHHHHHH
Confidence            3344444444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.32  E-value=93  Score=36.59  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=26.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhh
Q 012561          216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ  260 (461)
Q Consensus       216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQ  260 (461)
                      +..++|+.+..|.+....   -.++.-|-|-+||+-.|++-..-+
T Consensus       734 t~~eel~a~~~e~k~l~~---~q~~l~~~L~k~~~~~es~k~~~~  775 (970)
T KOG0946|consen  734 TQNEELNAALSENKKLEN---DQELLTKELNKKNADIESFKATQR  775 (970)
T ss_pred             CChHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHh
Confidence            345666666666655542   235667788888888888755443

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=84.07  E-value=14  Score=35.12  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=25.7

Q ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH
Q 012561          160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLA  195 (461)
Q Consensus       160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~  195 (461)
                      .+++++++|+.-+.+++..++.|+++|......+-+
T Consensus        66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~  101 (188)
T PF03962_consen   66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE  101 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            566677777777888888888888877776555433

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=84.04  E-value=0.66  Score=50.22  Aligned_cols=36  Identities=11%  Similarity=-0.000  Sum_probs=33.0

Q ss_pred             hhhhhhHHhHHhhhhhhhhhcccceeeeeeccCCCCC
Q 012561          418 YKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKDI  454 (461)
Q Consensus       418 ~kiiEGEkLRKKLHNTILELKGNIRv~crvrp~l~~~  454 (461)
                      +..+-..+|+..||+.+-+.. ||||||+|+|.+++.
T Consensus       285 ~ipyReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~  320 (568)
T COG5059         285 HIPYRESKLTRLLQDSLGGNC-NTRVICTISPSSNSF  320 (568)
T ss_pred             ccchhhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCch
Confidence            467888999999999999999 999999999999874

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=83.96  E-value=79  Score=35.45  Aligned_cols=96  Identities=22%  Similarity=0.275  Sum_probs=52.1

Q ss_pred             HHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHH
Q 012561          325 ELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQKK  404 (461)
Q Consensus       325 ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~  404 (461)
                      |++.....||+.+++.|-..   +.|.-|+....+|--.+--|...+..||++-.-.+-              ..|-.. 
T Consensus       224 E~~~Lq~q~dq~~~~Lqqy~---a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~--------------~~E~~~-  285 (617)
T PF15070_consen  224 EAQSLQEQRDQYLGHLQQYV---AAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKV--------------QLEMAH-  285 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--------------HHHHHH-
Confidence            56666677777777776653   345555555555655555555555666544322211              111122 


Q ss_pred             HHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhccc
Q 012561          405 LINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVN  440 (461)
Q Consensus       405 ~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGN  440 (461)
                        .+|+.--+.-|.-.-+-+-|+-.|+++.+.--|.
T Consensus       286 --~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~  319 (617)
T PF15070_consen  286 --QELQEAQEHLEALSQQNQQLQAQLSLMALPGEGD  319 (617)
T ss_pred             --HHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCc
Confidence              3333333333444556677888888877776554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.92  E-value=12  Score=36.20  Aligned_cols=26  Identities=23%  Similarity=0.288  Sum_probs=12.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHhHHH
Q 012561          215 ASLSEDLGKAQEELQSANQRIASIND  240 (461)
Q Consensus       215 ~~LseeL~k~q~E~~~anqqi~slqD  240 (461)
                      ..|.++|..++.+...++.++..++|
T Consensus       142 ~~L~~~l~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        142 QKLKNQLIVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555544444443

>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []

Probab=83.63  E-value=29  Score=32.58  Aligned_cols=112  Identities=21%  Similarity=0.346  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHH
Q 012561          238 INDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVH  317 (461)
Q Consensus       238 lqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~  317 (461)
                      ++.+|..+-.=|+....|+.+.++--..-.+.+  =++.|..+.+.|+.|++....                     ...
T Consensus        68 ~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~i--d~~~~~~~~~~i~~L~~~i~~---------------------~q~  124 (184)
T PF05791_consen   68 LDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAI--DQKDKEDLKEIIEDLQDQIQK---------------------NQD  124 (184)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHT-HHHHHHHHHHHHHHHHH---------------------HHH
T ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHH---------------------HHH
Confidence            345566666666666666666665555555555  566777778887777663211                     122


Q ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhh
Q 012561          318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKL  385 (461)
Q Consensus       318 Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKL  385 (461)
                      +|..+-.+|.+.|+   .-...+.+|..          .++.+.....+...-|..|+.+|..-+...
T Consensus       125 ~~~~~i~~L~~f~~---~l~~D~~~l~~----------~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I  179 (184)
T PF05791_consen  125 KVQALINELNDFKD---KLQKDSRNLKT----------DVDELQSILAGENGDIPQLQKQIENLNEEI  179 (184)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHH----------HHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHH----------hHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence            33444444444443   22223333333          444555566666778888888887776654

Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=83.58  E-value=11  Score=41.44  Aligned_cols=85  Identities=21%  Similarity=0.283  Sum_probs=42.5

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHH----Hhhhhhhh
Q 012561          214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIV----ENLSTLRG  289 (461)
Q Consensus       214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tiv----Enls~LrG  289 (461)
                      ..--...++.+..+++-+.-+....-+.+.-|+.==....+=...+...+..+...+.++|.|..|--    +.|++|-.
T Consensus       415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSE  494 (518)
T PF10212_consen  415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSE  494 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            33444445555555555554444444444444433333344444455555555555666655555432    34555555


Q ss_pred             hhhhHHHHH
Q 012561          290 QYISLQEQL  298 (461)
Q Consensus       290 ~~~SLq~QL  298 (461)
                      |..+|++||
T Consensus       495 HLasmNeqL  503 (518)
T PF10212_consen  495 HLASMNEQL  503 (518)
T ss_pred             HHHHHHHHH
Confidence            555555555

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=83.32  E-value=47  Score=32.33  Aligned_cols=57  Identities=11%  Similarity=0.155  Sum_probs=27.1

Q ss_pred             HHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          296 EQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       296 ~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      .+++.+++....+..|...+...+..+..++...+..-...-+++.....++..|+.
T Consensus        80 ~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~  136 (334)
T TIGR00998        80 LALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVP  136 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            344444444444444444444444444444444444444444445555556666666

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=83.04  E-value=1.1e+02  Score=36.54  Aligned_cols=99  Identities=15%  Similarity=0.249  Sum_probs=59.3

Q ss_pred             HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhch----
Q 012561          319 VASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDL----  390 (461)
Q Consensus       319 v~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDl----  390 (461)
                      ..--+.|.-++++++|+.-.++-.|..++..+-.    |-....++...||.-..-+..--..+..--+||.-.|-    
T Consensus       243 y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~  322 (1072)
T KOG0979|consen  243 YKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEE  322 (1072)
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344788899999999999999999888776644    44444556666666554444333333333333333333    


Q ss_pred             ----------hhhhhhhhhHHhHHHHHHHHHhHHHHh
Q 012561          391 ----------SALETKTEFEGQKKLINELRNHLEDAE  417 (461)
Q Consensus       391 ----------sa~etrte~E~Qk~~i~eLq~RLadaE  417 (461)
                                -+--+++..+.=++.|.++|.+|..++
T Consensus       323 ~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~  359 (1072)
T KOG0979|consen  323 KKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETE  359 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence                      334445555556666666666666543

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=82.71  E-value=11  Score=30.95  Aligned_cols=37  Identities=24%  Similarity=0.247  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          316 VHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       316 ~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      ...+...-.++..++.+||..+.+++..-.++.+.++
T Consensus        18 ~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~   54 (69)
T PF14197_consen   18 TRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKE   54 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444467777888999999999999999999988

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=82.67  E-value=22  Score=36.86  Aligned_cols=102  Identities=23%  Similarity=0.243  Sum_probs=83.1

Q ss_pred             hhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHH
Q 012561          284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEAR  363 (461)
Q Consensus       284 ls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEet  363 (461)
                      +--|+--..-=|-||++.-|+.+-.-+.-+.-.+|+..|..|.|.+.+..|...-..+.|+.|+.. ||  ..++-||..
T Consensus        27 ldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~-Ke--~qv~~lEgQ  103 (307)
T PF10481_consen   27 LDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQV-KE--SQVNFLEGQ  103 (307)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhh-hH--HHHHHHHHH
Confidence            333444444557799999999887777777888999999999999999999999999999999864 45  467889999


Q ss_pred             HhhHHHHHHHHHHHHHHHHhhhhhh
Q 012561          364 CASQSNQIRSLSDQLAAAEEKLEVS  388 (461)
Q Consensus       364 CssQ~eqI~~Lq~QLa~A~eKLk~a  388 (461)
                      .++-..||..|++.|-.-+.-|..+
T Consensus       104 l~s~Kkqie~Leqelkr~KsELErs  128 (307)
T PF10481_consen  104 LNSCKKQIEKLEQELKRCKSELERS  128 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887776666554

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=82.55  E-value=31  Score=35.41  Aligned_cols=150  Identities=23%  Similarity=0.302  Sum_probs=93.7

Q ss_pred             hhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhh---hhhhhHHH-----HH-
Q 012561          271 KRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRD---DRDHQLSQ-----VQ-  341 (461)
Q Consensus       271 ~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRd---DRDr~~~Q-----vq-  341 (461)
                      ..|--||++++=.+-+|++..-.|+++++..+-.-.+.++..+.+-....+|+.|+..+|+   .||..+..     |- 
T Consensus       101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~  180 (302)
T PF09738_consen  101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPD  180 (302)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCC
Confidence            3455688888888999999999999999998888888888777777777777777666664   34433321     00 


Q ss_pred             -------------------HHHHHHHHhHH------hhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh-----hhchh
Q 012561          342 -------------------ALTAEVIKHKE------LAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE-----VSDLS  391 (461)
Q Consensus       342 -------------------sL~aE~~~ykE------l~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk-----~aDls  391 (461)
                                         -.+.|-+..-+      |-++...|-+.=-.=.+||+-|..||..-..+-.     ..|-+
T Consensus       181 ~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~  260 (302)
T PF09738_consen  181 ATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGV  260 (302)
T ss_pred             CCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcc
Confidence                               00011111111      4445555554444455789999999965433333     22222


Q ss_pred             h-----hhh--hhhhHHh---HHHHHHHHHhHHHHhhhh
Q 012561          392 A-----LET--KTEFEGQ---KKLINELRNHLEDAEYKL  420 (461)
Q Consensus       392 a-----~et--rte~E~Q---k~~i~eLq~RLadaE~ki  420 (461)
                      +     +|-  .--++-|   -+.|.++..+|..||+-|
T Consensus       261 l~~~~~~En~d~~~~d~qrdanrqisd~KfKl~KaEQei  299 (302)
T PF09738_consen  261 LGDDEDLENTDLHFIDLQRDANRQISDYKFKLQKAEQEI  299 (302)
T ss_pred             cccccccccccccHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence            2     121  1113456   789999999999999865

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=82.16  E-value=1.2e+02  Score=36.05  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=55.3

Q ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 012561          266 AHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTA  345 (461)
Q Consensus       266 ~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~a  345 (461)
                      -.+.+..+.-+++.++       -+|.-.+.||.++.-+++++-+++..|..=|+.+-.+.+++---=.-+...+.+|..
T Consensus       429 lkek~t~l~~~h~~lL-------~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~  501 (980)
T KOG0980|consen  429 LKEKYTELRQEHADLL-------RKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQ  501 (980)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3444555555554443       357777888888888888777777777777666655555521111112223444444


Q ss_pred             HHHHhHH----hhhhhhHHHHHHhhHHHHHHHHH
Q 012561          346 EVIKHKE----LAVSSEDLEARCASQSNQIRSLS  375 (461)
Q Consensus       346 E~~~ykE----l~~k~~~LEetCssQ~eqI~~Lq  375 (461)
                      |++..-.    |..++..+.+..+.|..++..+.
T Consensus       502 El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l  535 (980)
T KOG0980|consen  502 ELALLLIELEELQRTLSNLAQSHNNQLAQLEDLL  535 (980)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4443322    44444444444555555554443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.06  E-value=1.1e+02  Score=35.96  Aligned_cols=94  Identities=17%  Similarity=0.305  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHH
Q 012561          219 EDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQL  298 (461)
Q Consensus       219 eeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL  298 (461)
                      +||+|-+.-.-.-+..-.|++.++ |=||.|--|---|..||-.+++.+..+..+              -|..--..--+
T Consensus       403 ~ElEkqRqlewErar~qem~~Qk~-reqe~iv~~nak~~ql~~eletLn~k~qql--------------s~kl~Dvr~~~  467 (1118)
T KOG1029|consen  403 EELEKQRQLEWERARRQEMLNQKN-REQEWIVYLNAKKKQLQQELETLNFKLQQL--------------SGKLQDVRVDI  467 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhhhhheecc
Confidence            556665433333333334444444 568887776666666777766666555433              23222222234


Q ss_pred             HHhHhhHHHHHHhhHHHHHHHHHHHHHHh
Q 012561          299 STYKASQDEAMRQKDALVHEVASMRVELQ  327 (461)
Q Consensus       299 ~~skaSq~Ea~kQK~~L~~Ev~~LR~ELq  327 (461)
                      ...|.--++..+|++--..|+.-|...||
T Consensus       468 tt~kt~ie~~~~q~e~~isei~qlqarik  496 (1118)
T KOG1029|consen  468 TTQKTEIEEVTKQRELMISEIDQLQARIK  496 (1118)
T ss_pred             chHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            44444445555555555555555544444

>PF13166 AAA_13: AAA domain

Probab=81.67  E-value=84  Score=34.12  Aligned_cols=6  Identities=33%  Similarity=0.362  Sum_probs=2.7

Q ss_pred             eeeecc
Q 012561          444 SALFRR  449 (461)
Q Consensus       444 ~crvrp  449 (461)
                      |..+|+
T Consensus       487 y~l~~~  492 (712)
T PF13166_consen  487 YKLQRK  492 (712)
T ss_pred             EEEEEC
Confidence            444444

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=81.26  E-value=55  Score=31.71  Aligned_cols=121  Identities=19%  Similarity=0.178  Sum_probs=63.9

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHH-HHH-HHHHHHHHHHHhHHHhhHHHHHHhhHHHHHH
Q 012561          129 FQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLII-VEL-RKSFASLQEKLAKEESDKLAALDSLAREKET  206 (461)
Q Consensus       129 fqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i-~EL-r~~~~SLqe~L~keeseKl~a~~s~~kEkEa  206 (461)
                      |..+-...-.|+.-|+..++..+..|.+....|+.+.-+=.+-+ -++ ...+.+|.+.-.++=..|.-|++.     .|
T Consensus        76 ~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~-----~A  150 (206)
T PF14988_consen   76 FRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALEL-----AA  150 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHH-----HH
Confidence            44444445555555555555555555555555544443333332 222 223333333333332233222221     24


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHh
Q 012561          207 RLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQH  254 (461)
Q Consensus       207 R~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQ  254 (461)
                      ..+.-.--.++-.|-.+++.++....++...|+++...|.+=++.|++
T Consensus       151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~  198 (206)
T PF14988_consen  151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ  198 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445566677777777777777778888888888777777754

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=81.17  E-value=53  Score=31.53  Aligned_cols=167  Identities=19%  Similarity=0.184  Sum_probs=84.4

Q ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHH
Q 012561          162 RNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDM  241 (461)
Q Consensus       162 k~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDm  241 (461)
                      +.+..++..+|...=+.+..++.+|.+....-......+  ..-.-...|......+.+|.-++..+..+|.++.++++-
T Consensus        37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~--~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~  114 (240)
T PF12795_consen   37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEIL--ANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTR  114 (240)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            344555555555555555555555555543300000000  111122334444455556666667777777777666655


Q ss_pred             HHHHH----HHHhHHHhhhhhhhcc-----HHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhh
Q 012561          242 YKLLQ----EYNSSLQHYNTKLQKD-----IDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQK  312 (461)
Q Consensus       242 yKRLQ----EYNTSLQQYNSkLQaD-----l~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK  312 (461)
                      -.|.|    +-...||+-+..|++-     -.......-.++.|-+.+--.+..|+=--.|.....+.++.-.|...++.
T Consensus       115 p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~  194 (240)
T PF12795_consen  115 PERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARI  194 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH
Confidence            44443    3444555555555531     12223345556666665555555555444444444555555555555555


Q ss_pred             HHHHHHHHHHHHHHhhhh
Q 012561          313 DALVHEVASMRVELQQVR  330 (461)
Q Consensus       313 ~~L~~Ev~~LR~ELqqvR  330 (461)
                      ..+-.++..|+.-|-+.|
T Consensus       195 ~~l~~~l~~Lq~~ln~~R  212 (240)
T PF12795_consen  195 QRLQQQLQALQNLLNQKR  212 (240)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666666666555555444

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.70  E-value=1.1e+02  Score=34.85  Aligned_cols=147  Identities=21%  Similarity=0.270  Sum_probs=98.2

Q ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHhHh
Q 012561          160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERS--HASLSEDLGKAQEELQSANQRIAS  237 (461)
Q Consensus       160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~--~~~LseeL~k~q~E~~~anqqi~s  237 (461)
                      .|+.+.+||.+-+.-+|..++.++|-|.+-.+--.-..++ +-|+|.-+--|++  -+.+.-.+-+++.|++...+-++.
T Consensus        47 ~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~-g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~  125 (772)
T KOG0999|consen   47 DLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD-GEEREESLLQESAAKEEYYLQKILELENELKQLRQELTN  125 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777777777777777777776655432222111 1222222211111  133445566777888888888887


Q ss_pred             HHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHH
Q 012561          238 INDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDE  307 (461)
Q Consensus       238 lqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~E  307 (461)
                      ++.-+.||-.-|.-+=--|+.+-.+--.....++..----+.++---|.|-..+.|||.|.+..|.||-|
T Consensus       126 ~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVE  195 (772)
T KOG0999|consen  126 VQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVE  195 (772)
T ss_pred             HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhh
Confidence            7777777777777777777777777667777777766666778888888888999999999999998865

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=80.66  E-value=93  Score=34.00  Aligned_cols=54  Identities=24%  Similarity=0.336  Sum_probs=36.3

Q ss_pred             HHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhH
Q 012561          183 QEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIA  236 (461)
Q Consensus       183 qe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~  236 (461)
                      ++.+...|+|.-+|-.-+.+=++.+..++.-.+.+..++-|++.++.+...|..
T Consensus        94 ~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q  147 (499)
T COG4372          94 QGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQ  147 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555565666666666777777777777777778888777777766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	461
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-20
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	3e-06
3u06_A	412	Protein claret segregational; motor domain, stalk	7e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	7e-05

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 94.5 bits (235), Expect = 1e-20
 Identities = 50/337 (14%), Positives = 131/337 (38%), Gaps = 6/337 (1%)

Query: 101  RYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELA 160
              + +   + + E +    +R +      +ELE  +    E  +N L+   Q   E+   
Sbjct: 852  VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE-KNLLQEKLQAETELYAE 910

Query: 161  LRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRL-NMERSHASLSE 219
                   L     EL +    ++ ++ +EE ++   L +  ++ + ++ ++E        
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEE-ERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969

Query: 220  DLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSA 279
               K Q E  +A+ +I  + D   ++++ N+ L      L++ +     ++   E++   
Sbjct: 970  ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029

Query: 280  IVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQ 339
            + +  +        L+ +L   + S+ E  + K  L  E + +  ++ +++       +Q
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089

Query: 340  VQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEF 399
            +     E+   +      ED  ++  +   +IR L   ++  +E LE    +  + + + 
Sbjct: 1090 LAKKEEEL---QAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146

Query: 400  EGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILE 436
                + +  L+  LED        ++LR   +    +
Sbjct: 1147 RDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 56/312 (17%), Positives = 116/312 (37%), Gaps = 13/312 (4%)

Query: 136  YAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEK--LAKEESDK 193
               E +R +   + +E +  E+E       EE NL+  +L+       E   +    + K
Sbjct: 862  KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAK 921

Query: 194  LAALDSLAREKETRL-NMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSL 252
               L+ +  E E R+   E     L  +  K Q+++    +++       + LQ    + 
Sbjct: 922  KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981

Query: 253  QHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQK 312
                 K++ DI    +   +  KE+  + E +S        L   L+  +       + K
Sbjct: 982  DGKIKKMEDDILIMEDQNNKLTKERKLLEERVS-------DLTTNLAEEEEKAKNLTKLK 1034

Query: 313  DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIR 372
            +     ++ + V L++    R       + L  E     +L     +L+A+ A    Q+ 
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGES---SDLHEQIAELQAQIAELKAQLA 1091

Query: 373  SLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHN 432
               ++L AA  +LE           +    +  I++L+  LE  +    + EK ++ L  
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151

Query: 433  TILELEVNLSSS 444
             +  L+  L  +
Sbjct: 1152 ELEALKTELEDT 1163

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 54/306 (17%), Positives = 107/306 (34%), Gaps = 14/306 (4%)

Query: 152  QKCAEMELALRNKEEELNLIIVEL---RKSFASLQEKLAKEESDKLAALDSLAREKETRL 208
             K    E  ++ K+EEL                L++K  +   +K    + L  E E   
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909

Query: 209  NMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHE 268
              E     L+    + +E L     RI    +  + LQ     +Q     L++ ++    
Sbjct: 910  EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969

Query: 269  SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQ 328
            + ++ + EK      +  +    + +++Q +     +     +   L   +A    + + 
Sbjct: 970  ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029

Query: 329  VRDDRDHQLSQVQALTAEVIKHK----ELAVSSEDLEARCASQSNQIRSLSDQLAAAEEK 384
            +   ++   S +  L   + K +    EL      LE   +    QI  L  Q+A  + +
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089

Query: 385  LE--VSDLSALETKTEFE-----GQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILEL 437
            L     +L A   + E E        K I EL +H+ D +  L   +  R +      +L
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149

Query: 438  EVNLSS 443
               L +
Sbjct: 1150 SEELEA 1155

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 60/373 (16%), Positives = 131/373 (35%), Gaps = 65/373 (17%)

Query: 84   TIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIK---RLRLCIKWFQELEGDYAFEH 140
            +  F R  V A L E+ R         +  +++   +   R  L  K F + +       
Sbjct: 771  SKIFFRTGVLAHL-EEER-------DLKITDVIIAFQAQCRGYLARKAFAKRQ------- 815

Query: 141  ERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSL 200
            ++L +   +  Q      + + +         +         +E++  ++ +     +  
Sbjct: 816  QQLESIFCI--QYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQ 873

Query: 201  AREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ 260
             + +     +E+ H  L E+    QE+LQ+  +  A   +M   L      L+    +++
Sbjct: 874  QKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEME 933

Query: 261  KDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVA 320
              I+   E  ++ + EK         ++ Q + L+EQL   +A++ +   +K     ++ 
Sbjct: 934  ARIEEEEERSQQLQAEKKK-------MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986

Query: 321  SMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAA 380
             M  ++  + D  +    + + L                           +  L+  LA 
Sbjct: 987  KMEDDILIMEDQNNKLTKERKLLEER------------------------VSDLTTNLAE 1022

Query: 381  AEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVN 440
             EEK    +L+            KL N+  + + + E +L + EK R+ L     +LE  
Sbjct: 1023 EEEK--AKNLT------------KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068

Query: 441  LSSSALFRRGLKD 453
             S        L+ 
Sbjct: 1069 SSDLHEQIAELQA 1081

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 39/289 (13%), Positives = 101/289 (34%), Gaps = 14/289 (4%)

Query: 99   KMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEME 158
            + R    F  + R   ++   +R+ +  K +Q +          LR  L  ++ +    E
Sbjct: 805  QARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLRE 864

Query: 159  LALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNME-RSHASL 217
                  ++ +   +  +          L      +      +A+ +  +L +E RS    
Sbjct: 865  HKSIIIQKHVRGWLARVH-----YHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERY 919

Query: 218  SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEK 277
             +     + ++    ++I   N  YK L E  ++L+   +   + + +  E ++  E+E 
Sbjct: 920  KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA 979

Query: 278  SAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL 337
                        + +SLQE+++  +    +   +K  +       + E +Q+  +   Q 
Sbjct: 980  KNATN-------RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032

Query: 338  SQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE 386
            + ++    E+ +      + E  E        + + L   L     + +
Sbjct: 1033 TLLKTEKEELNRRIHDQ-AKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 40/237 (16%), Positives = 85/237 (35%), Gaps = 16/237 (6%)

Query: 98   EKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEM 157
              +R K +   +E    ++    R  L    +        +     R  +   E K  ++
Sbjct: 852  YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI 911

Query: 158  ELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASL 217
            E     + ++L+   + L      LQ K+ ++               E   N+E ++++ 
Sbjct: 912  EARSVERYKKLH---IGLENKIMQLQRKIDEQN-------KEYKSLLEKMNNLEITYSTE 961

Query: 218  SEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEK 277
            +E L    E L+ + +   +  +    LQE  + L+    + Q +     E   + + E 
Sbjct: 962  TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021

Query: 278  SAIVENL----STLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVR 330
              +V  L    + L+ +   L  ++        E M +K  LV E   + ++L   R
Sbjct: 1022 EQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK--LVEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 57/340 (16%), Positives = 116/340 (34%), Gaps = 30/340 (8%)

Query: 87   FTREDVEALLSEKMRYKNKFNY------KERCENMMDYIKRLRLCIKWFQELEGDYA--- 137
            F R    A L EK+R               R   M     R+R      Q     +    
Sbjct: 750  FFRAGQVAYL-EKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARC 808

Query: 138  -FEHERLRNALELSEQKCAEMELALRNKEEELNLIIV--ELRKSFASLQEKLAKEESDKL 194
                 R   A  +  QK   M +  +  +   +  I    L + +    +        K 
Sbjct: 809  YATFLRRTRAAIII-QKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKS 867

Query: 195  AALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNS--SL 252
              +    R    R++  R+         KA   LQ   +R+ +  ++ KL  E  S    
Sbjct: 868  IIIQKHVRGWLARVHYHRTL--------KAIVYLQCCYRRMMAKRELKKLKIEARSVERY 919

Query: 253  QHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQK 312
            +  +  L+  I      I    KE  +++E ++ L   Y +  E+L +       +  + 
Sbjct: 920  KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEA 979

Query: 313  DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHK-ELAVSSEDLEARCASQSNQI 371
                + V S++ E+ ++R +     ++ + +     K+K E      +L+ +      + 
Sbjct: 980  KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEK 1039

Query: 372  RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRN 411
              L+ ++    +++       +E K   E  K+L  +L +
Sbjct: 1040 EELNRRIHDQAKEIT----ETMEKKLVEE-TKQLELDLND 1074

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 25/222 (11%), Positives = 80/222 (36%), Gaps = 7/222 (3%)

Query: 223  KAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVE 282
            K  + ++ A   + ++   Y +  +Y   L+ + + + +       +     +   AIV 
Sbjct: 833  KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892

Query: 283  NLSTLRGQYISLQ-EQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ 341
                 R      + ++L     S +   +    L +++  ++ ++ +   +    L ++ 
Sbjct: 893  LQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952

Query: 342  ALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEG 401
             L        E          R      + ++ ++++ + +E++        +T+TE + 
Sbjct: 953  NLEITYSTETE---KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 402  QKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSS 443
             ++  ++ ++  E    +L   ++    L     EL   +  
Sbjct: 1010 IEEWADKYKHETEQLVSEL---KEQNTLLKTEKEELNRRIHD 1048

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 72/543 (13%), Positives = 154/543 (28%), Gaps = 167/543 (30%)

Query: 6   QNKPPVLSN-NITKASPSSN-KKKLGVDEVTCDKEQKFGAEKMVG---------TANNAR 54
            N   V +  N+++  P    ++ L    +     +    + ++G            + +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQAL----LELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 55  IRQAFSVVNGIQ--DLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERC 112
           ++        I   +L             C + E     +E L  +K+ Y+   N+  R 
Sbjct: 176 VQCKMD--FKIFWLNLK-----------NCNSPE---TVLEML--QKLLYQIDPNWTSRS 217

Query: 113 ENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRN---KE--EE 167
           ++  +   R+       + L      + +   N L           L L N    +    
Sbjct: 218 DHSSNIKLRIHSIQAELRRL-----LKSKPYENCL-----------LVLLNVQNAKAWNA 261

Query: 168 LNL---IIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSED---- 220
            NL   I++  R                K    D L+    T ++++    +L+ D    
Sbjct: 262 FNLSCKILLTTR---------------FKQVT-DFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 221 -----LGKAQEELQSANQRI---------ASINDMYKLLQEYNSSLQHYNT-KLQKDIDA 265
                L    ++L                 SI D       +    +H N  KL   I++
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW----KHVNCDKLTTIIES 361

Query: 266 AHESIKRGEKEKSAIVENLSTLR-GQYISLQ--EQLSTYKASQD-----EAMRQKDALVH 317
           +   ++    E   + + LS      +I       +       D       + +   +  
Sbjct: 362 SLNVLE--PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 318 EVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQ 377
           +     + +  +  +   +L    AL      H+ + V   ++  +     + I    DQ
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYAL------HRSI-VDHYNI-PKTFDSDDLIPPYLDQ 471

Query: 378 ---------LAAAEEKLEVS-------DLSALETKTEFEGQ------------------- 402
                    L   E    ++       D   LE K   +                     
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 403 ----------KKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLK 452
                     ++L+N + + L   E  LI  +      +  +L + +     A+F    K
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSK------YTDLLRIALMAEDEAIFEEAHK 585

Query: 453 DID 455
            + 
Sbjct: 586 QVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 58/452 (12%), Positives = 131/452 (28%), Gaps = 130/452 (28%)

Query: 81  ECGTIE------FTREDVEALLSEKMRYKNKFNYKERCENMMDYI--KRLRLCIKWFQE- 131
           +C  ++       ++E+++ ++  K       +       +   +  K+  +  K+ +E 
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSK-------DAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 132 LEGDYAFEHERLRNALELSEQKCAEMEL--ALRNKEEELNLII----VELRKSFASLQEK 185
           L  +Y F    ++       Q      +    R++    N +     V   + +  L++ 
Sbjct: 87  LRINYKFLMSPIKTE---QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 186 LAKEESDK--------------LAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSA 231
           L +    K              +A    +    + +  M+     L+  L        S 
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLN--LKN----CNSP 195

Query: 232 NQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEK-------------- 277
              +  +  +   +    +S   +++ ++  I +    ++R  K K              
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 278 -------------------SAIVENLSTLRGQYISLQEQLSTYKASQDEAMR-------- 310
                                + + LS     +ISL     T   + DE           
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDC 313

Query: 311 QKDALVHEVA-------SMRVELQQVRDDRDH----QLSQVQALTAEVIKHKELAVSSED 359
           +   L  EV        S+  E   +RD        +      LT  +I+      S   
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLT-TIIE-----SSLNV 365

Query: 360 LEARCASQSNQIRSLSDQLAAAEE--KLEVSDLSALETKTEFEGQKKLINELRN------ 411
           LE        + R + D+L+       +    LS +           ++N+L        
Sbjct: 366 LE------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 412 -------HLEDAEYKLIEGEKLRKRLHNTILE 436
                   +     +L    +    LH +I++
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVD 451

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 34/259 (13%), Positives = 77/259 (29%), Gaps = 55/259 (21%)

Query: 240 DMYKLLQEYNSSLQHYNTKLQKDIDAAH-ESIKRG---EKEKSAIVENLSTLRGQY---- 291
           +  +   +Y   L  +      + D    + + +    ++E   I+ +   + G      
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 292 ISLQEQLSTYKASQDEAMRQK-DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKH 350
             L +Q    +   +E +R     L   ++ ++ E +Q        + Q   L  +    
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFL---MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 351 KELAVSSED--LEARCASQSNQIRSLSDQ---------------LAAAEEKLEVSDLSAL 393
            +  VS     L+ R       +  L                  +A      +V     +
Sbjct: 127 AKYNVSRLQPYLKLR-----QALLELRPAKNVLIDGVLGSGKTWVAL-----DVCLSYKV 176

Query: 394 ETKTEFE------GQKKLINELRNHLEDAEYKLIE--------GEKLRKRLHNTILELEV 439
           + K +F+              +   L+   Y++             ++ R+H+   EL  
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR- 235

Query: 440 NLSSSALFRRGLKDID-VC 457
            L  S  +   L  +  V 
Sbjct: 236 RLLKSKPYENCLLVLLNVQ 254

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 7e-04
 Identities = 32/230 (13%), Positives = 77/230 (33%), Gaps = 65/230 (28%)

Query: 87  FTREDV---EALLS---EKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQE--------- 131
           F          LLS     +              +++ + +  L  K  +E         
Sbjct: 381 F-PPSAHIPTILLSLIWFDVIK-------SDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 132 ------LEGDYAFEHERLRNALELSEQKCAEMELA--------------LRNKE-----E 166
                 LE +YA  H  + +   + +   ++  +               L+N E      
Sbjct: 433 LELKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 167 ELNLIIVELRKSFASLQEKLAKEESDKLAA---LDSLAREKETRLNMERSHASLSEDLGK 223
              ++ ++ R  F  L++K+  + +   A+   L++L + K  +  +  +       +  
Sbjct: 492 LFRMVFLDFR--F--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 224 AQEELQSANQRIASINDMYK-LLQEYNSSLQHYNTKLQKDIDAAHESIKR 272
             + L    + +  I   Y  LL+    +L   +  + ++   AH+ ++R
Sbjct: 548 ILDFLPKIEENL--ICSKYTDLLR---IALMAEDEAIFEE---AHKQVQR 589

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 375 SDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTI 434
           + ++AA +EK+          K +    K+ I +    +++    LI+ E +R+ LHN +
Sbjct: 2   ASKIAALKEKIA-------ALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54

Query: 435 LEL 437
            EL
Sbjct: 55  QEL 57

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 391 SALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILEL 437
             +  +   E   +   +    LE  + +L +    RK LHNT+++L
Sbjct: 11  EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 22/195 (11%), Positives = 59/195 (30%), Gaps = 20/195 (10%)

Query: 98   EKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEM 157
             K+R   +  +        + I      ++  ++   +      + +  + +  QK   +
Sbjct: 835  TKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRI 894

Query: 158  ELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLN-MERSHAS 216
               L N     +                 + E  D + A+ +  +  E      +     
Sbjct: 895  LKKLENWATTKS-------------VYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQ 941

Query: 217  LSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKE 276
             + DL     +L   N      N + +L +  ++      T ++   +    ++   E E
Sbjct: 942  SNSDLLSILAQLTELNY-----NGVPELTERKDTFFAQQWTGVKSSAETYKNTLLA-ELE 995

Query: 277  KSAIVENLSTLRGQY 291
            +   +E+L      +
Sbjct: 996  RLQKIEDLHHHHHHH 1010

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	461
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	99.26
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.11
3u06_A	412	Protein claret segregational; motor domain, stalk	99.11
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.73
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.67
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.04
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.88
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.82
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.54
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.54
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.44
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.43
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	95.05
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	95.0
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	94.82
4etp_B	333	Spindle POLE BODY-associated protein VIK1; kinesin	94.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.72
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.64
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	94.19
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	94.19
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	93.83
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	93.78
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.75
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	93.56
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.49
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	93.43
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	93.19
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	93.16
1d7m_A	101	Cortexillin I; coiled-coil, coiled-coil trigger si	92.41
3mov_A	95	Lamin-B1; LMNB1, B-type lamins, intermediate filam	91.73
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	90.88
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	89.07
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	88.47
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	88.09
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	87.17
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	87.09
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	86.89
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	85.56
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	84.58
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	83.87
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	83.4
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	83.35
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	83.24
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	82.42
3mxz_A	116	Tubulin-specific chaperone A; helix bundle; 1.60A	81.18
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	80.76
1hci_A	476	Alpha-actinin 2; triple-helix coiled coil, contrac	80.32

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=99.26  E-value=6.2e-12  Score=125.75  Aligned_cols=54  Identities=28%  Similarity=0.375  Sum_probs=49.5

Q ss_pred             HHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccceeeeeeccCCCC
Q 012561          400 EGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKD  453 (461)
Q Consensus       400 E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNIRv~crvrp~l~~  453 (461)
                      ++....|++++.++.+...++++.|.+||+|||+|.||||||||||||||+++.
T Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~   73 (403)
T 4etp_A           20 AALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKN   73 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCc
Confidence            456677888889999999999999999999999999999999999999999876

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.11  E-value=2.3e-06  Score=73.64  Aligned_cols=11  Identities=9%  Similarity=0.133  Sum_probs=4.0

Q ss_pred             HHHHHHHHHHH
Q 012561          141 ERLRNALELSE  151 (461)
Q Consensus       141 ekL~~~Le~~e  151 (461)
                      ..|...+...+
T Consensus        23 ~~l~~~l~~l~   33 (284)
T 1c1g_A           23 DEAEADKKAAE   33 (284)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=99.11  E-value=6.3e-11  Score=119.19  Aligned_cols=68  Identities=24%  Similarity=0.326  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccceeeeeeccCC
Q 012561          372 RSLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGL  451 (461)
Q Consensus       372 ~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNIRv~crvrp~l  451 (461)
                      .+|+.+|....++.              ++-.+.++.++..+++.+.++...+.+||+|||+|.||||||||||||||++
T Consensus         6 ~~l~~el~~~~~~~--------------~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~   71 (412)
T 3u06_A            6 AALSTEVVHLRQRT--------------EELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPL   71 (412)
T ss_dssp             HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCC
Confidence            45666665554443              4455667888888888899999999999999999999999999999999998


Q ss_pred             CC
Q 012561          452 KD  453 (461)
Q Consensus       452 ~~  453 (461)
                      +.
T Consensus        72 ~~   73 (412)
T 3u06_A           72 ES   73 (412)
T ss_dssp             GG
T ss_pred             ch
Confidence            64

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.06  E-value=4.9e-06  Score=71.60  Aligned_cols=20  Identities=25%  Similarity=0.355  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHh
Q 012561          218 SEDLGKAQEELQSANQRIAS  237 (461)
Q Consensus       218 seeL~k~q~E~~~anqqi~s  237 (461)
                      ..++.++..++..+..++..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~   94 (284)
T 1c1g_A           75 EKKATDAEADVASLNRRIQL   94 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.73  E-value=5.9e-08  Score=107.35  Aligned_cols=133  Identities=14%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHH
Q 012561          163 NKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMY  242 (461)
Q Consensus       163 ~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmy  242 (461)
                      .+++++...+..+...+..+++++..-+.++.++...+..+.+....++.....+..++.+++.++..+..++..+++..
T Consensus       864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l  943 (1184)
T 1i84_S          864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS  943 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555555655556666666666666666666666666666666666666666666655555444


Q ss_pred             HHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561          243 KLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ  295 (461)
Q Consensus       243 KRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq  295 (461)
                      ..+++=...+++=-..|+.+++...+.+..+++++..+-..+..|.+....++
T Consensus       944 ~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~le  996 (1184)
T 1i84_S          944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME  996 (1184)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433333333333455555555555566666665555555444444333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.67  E-value=7e-08  Score=106.73  Aligned_cols=42  Identities=21%  Similarity=0.329  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhccccee
Q 012561          402 QKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSS  443 (461)
Q Consensus       402 Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNIRv  443 (461)
                      ....|.+|++.|.+.+..+-.-+.-++.|...+-+|++-|.-
T Consensus      1121 Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S         1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555544443333344455566666666665543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.04  E-value=0.016  Score=53.34  Aligned_cols=70  Identities=20%  Similarity=0.244  Sum_probs=60.1

Q ss_pred             HhhHHHHHHHHHHHHHHhhhhhhhhhhHH-------HHHHHHHHHHHhHH-----------hhhhhhHHHHHHhhHH---
Q 012561          310 RQKDALVHEVASMRVELQQVRDDRDHQLS-------QVQALTAEVIKHKE-----------LAVSSEDLEARCASQS---  368 (461)
Q Consensus       310 kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~-------QvqsL~aE~~~ykE-----------l~~k~~~LEetCssQ~---  368 (461)
                      .+|++|-.|+..|.+.|.+-|.+|.+-..       .|++|..|+...++           |.-+++.||-.|++..   
T Consensus        62 ~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~  141 (168)
T 3o0z_A           62 NSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDL  141 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            35788999999999999999999988766       78889999888887           8889999999999988   


Q ss_pred             -HHHHHHHHHHH
Q 012561          369 -NQIRSLSDQLA  379 (461)
Q Consensus       369 -eqI~~Lq~QLa  379 (461)
                       =.+++||+.+.
T Consensus       142 ~~eLKalQ~~~e  153 (168)
T 3o0z_A          142 NYKLKSLQQRLE  153 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence             66888887765

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.00  E-value=0.059  Score=50.25  Aligned_cols=116  Identities=16%  Similarity=0.209  Sum_probs=76.1

Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHH
Q 012561          126 IKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKE  205 (461)
Q Consensus       126 IrWfqelE~~y~~EqekL~~~Le~~ek~~~e~E~~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkE  205 (461)
                      |.||..+=..|..+...++..|+.-...--++|++|...++.++..+.+|+..+..|...+..-.               
T Consensus        12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k---------------   76 (189)
T 2v71_A           12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALK---------------   76 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence            56777777778888888999999999999999999999999999999999988888876654322               


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHH
Q 012561          206 TRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDA  265 (461)
Q Consensus       206 aR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~  265 (461)
                        .-...++...+..+..       +...|..+.+++..|+.|-..|=|=|--|-.-.-.
T Consensus        77 --~K~~~~~~e~~~~~~~-------Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~  127 (189)
T 2v71_A           77 --EKLEHQYAQSYKQVSV-------LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA  127 (189)
T ss_dssp             --HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence              1112222222222222       23334455566666666666666655544433333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.88  E-value=0.0055  Score=61.37  Aligned_cols=144  Identities=15%  Similarity=0.262  Sum_probs=70.4

Q ss_pred             HHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhh
Q 012561          233 QRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQK  312 (461)
Q Consensus       233 qqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK  312 (461)
                      +.+.+++++.++..+.+...-+-+..|+.++......+.+++.+...+...+..++...   .+......+.       +
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i---~~~~~~~~~~-------~  497 (597)
T 3oja_B          428 DTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEI---DTNLRRYRLP-------K  497 (597)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTCC-------C
T ss_pred             cchHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhcCcc-------c
Confidence            45566777777777777777777788888887777777777777766666555555432   2222222211       2


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH----HHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561          313 DALVHEVASMRVELQQVRDDRDHQLSQVQALTAEV----IKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLE  386 (461)
Q Consensus       313 ~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~----~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk  386 (461)
                      +.+......+..++++++++-.....+.+.+..++    ..|+.+-.+...||..|..+++++..|.++++..+.+++
T Consensus       498 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~  575 (597)
T 3oja_B          498 DGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK  575 (597)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            22222333444444444444444444445454444    444446668889999999999999999988887766554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.82  E-value=0.07  Score=49.95  Aligned_cols=81  Identities=12%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             hhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhH
Q 012561          258 KLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQL  337 (461)
Q Consensus       258 kLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~  337 (461)
                      .|+.+++.+...+..++++-..+++.+..+......++..++..+....++...   +-.++..++.++..++..|+...
T Consensus        94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~~~~e~~~e~~~l~~~r~~l~  170 (256)
T 3na7_A           94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL---VENEVKNIKETQQIIFKKKEDLV  170 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788888888888888888888888888888888888877776666555444   34445556677777778887776


Q ss_pred             HHHH
Q 012561          338 SQVQ  341 (461)
Q Consensus       338 ~Qvq  341 (461)
                      ..+.
T Consensus       171 ~~i~  174 (256)
T 3na7_A          171 EKTE  174 (256)
T ss_dssp             HTSC
T ss_pred             hcCC
Confidence            6553

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.54  E-value=1.7  Score=54.11  Aligned_cols=212  Identities=14%  Similarity=0.197  Sum_probs=123.9

Q ss_pred             ChHHhhHhHHHHHHHH--HHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHhhHHHHHHHHH------chHHHHHHH
Q 012561          107 NYKERCENMMDYIKRL--RLCIKWFQELEG-------DYAFEHERLRNALELSEQKCAEMELALR------NKEEELNLI  171 (461)
Q Consensus       107 dyKgr~EqM~dyIKrL--r~CIrWfqelE~-------~y~~EqekL~~~Le~~ek~~~e~E~~lk------~k~eEL~~~  171 (461)
                      +++..+-+||-||-.-  ..|.+.|+++=.       +|+.=+.-.+.-   ..+|..+++.+..      .|+.|....
T Consensus      1859 ~~~~~~~~~~~~iH~sv~~~s~~~~~~~~R~~yvTP~syLeli~~y~~l---l~~K~~el~~~~~rl~~GL~KL~et~~~ 1935 (3245)
T 3vkg_A         1859 SHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLL---INEKRDQLEEEQLHLNIGLKKLRDTEAQ 1935 (3245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777643  567776665421       244323322222   2333334433332      477788888


Q ss_pred             HHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhH
Q 012561          172 IVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSS  251 (461)
Q Consensus       172 i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTS  251 (461)
                      +.+|++.++.++..|..-..+--+++....++.+.   ||+.++...++=.++.       .+...++            
T Consensus      1936 V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~---ae~~k~~v~~~~~~~~-------~~~~ei~------------ 1993 (3245)
T 3vkg_A         1936 VKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQA---AEIKQKDARELQVQLD-------VRNKEIA------------ 1993 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHH------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHH------------
Confidence            88899998888888876555444455555544332   3333322211111111       1111111            


Q ss_pred             HHhhhhhhhccHHHHH------HHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHH
Q 012561          252 LQHYNTKLQKDIDAAH------ESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVE  325 (461)
Q Consensus       252 LQQYNSkLQaDl~~~~------e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~E  325 (461)
                        .--..-++||+.|.      +.+..++++-....+.|..++...+.|++.|+..++.-++++++|..|..|++....-
T Consensus      1994 --~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A         1994 --VQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp             --HHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11112345655543      5677777777777778888888888888888888888889999999888888766555


Q ss_pred             HhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 012561          326 LQQVRDDRDHQLSQVQALTAEVIKHKE  352 (461)
Q Consensus       326 LqqvRdDRDr~~~QvqsL~aE~~~ykE  352 (461)
                      |++       .-.=+..|.+|-..+.+
T Consensus      2072 l~r-------A~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A         2072 VDR-------SIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp             HHH-------HHHHHHHHHHHHHHHHH
T ss_pred             HHH-------HHHHHHhhhhccccHHH
Confidence            443       33446778888877777

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.54  E-value=0.34  Score=45.28  Aligned_cols=176  Identities=14%  Similarity=0.110  Sum_probs=75.1

Q ss_pred             HHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhh--hhHHHHHHHHHH
Q 012561          269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRD--HQLSQVQALTAE  346 (461)
Q Consensus       269 ~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRD--r~~~QvqsL~aE  346 (461)
                      .+.++......+-..+..|......++.++...+...++.-++...+-.++..++.-+...+.-=+  +.--+.++|+.|
T Consensus        19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kE   98 (256)
T 3na7_A           19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIE   98 (256)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            444444444444444555555555555555555555544444444444444444433322221100  011235566666


Q ss_pred             HHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhH----HHHHHHHHhHHHHhhh---
Q 012561          347 VIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQK----KLINELRNHLEDAEYK---  419 (461)
Q Consensus       347 ~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk----~~i~eLq~RLadaE~k---  419 (461)
                      +...+.   +...||+.=.-.-++|..++..++.++..+.-..-...+.+.++...-    ..+..|..+-+...-.   
T Consensus        99 ie~~~~---~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~  175 (256)
T 3na7_A           99 EDIAKE---RSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP  175 (256)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            666555   333333333333334444444333333333322222222222222221    2222222222222111   


Q ss_pred             --hhhhHHhHHhhhhh-hhhhcccceeeeee
Q 012561          420 --LIEGEKLRKRLHNT-ILELEVNLSSSALF  447 (461)
Q Consensus       420 --iiEGEkLRKKLHNT-ILELKGNIRv~crv  447 (461)
                        |-.=+++|+..+++ |-.+.|+.=.-|++
T Consensus       176 ~lL~~Yerir~~~~g~avv~v~~~~C~GC~~  206 (256)
T 3na7_A          176 KIYSFYERIRRWAKNTSIVTIKKQACGGCFI  206 (256)
T ss_dssp             HHHHHHHHHHHHHGGGSEEECBTTBCTTTCC
T ss_pred             HHHHHHHHHHHhCCCceEEEeeCCccCCCCe
Confidence              11236777755554 66777776656654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.44  E-value=0.13  Score=57.74  Aligned_cols=33  Identities=36%  Similarity=0.378  Sum_probs=2.6

Q ss_pred             HHHHchHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 012561          159 LALRNKEEELNLIIVELRKSFASLQEKLAKEES  191 (461)
Q Consensus       159 ~~lk~k~eEL~~~i~ELr~~~~SLqe~L~kees  191 (461)
                      ..|.++++||..-+.++.+....|++++...+.
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~  956 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI  956 (1080)
T ss_dssp             ---------------------------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            445555566666555555555556655544443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.43  E-value=0.27  Score=42.33  Aligned_cols=79  Identities=22%  Similarity=0.258  Sum_probs=51.8

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHH----hHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhh
Q 012561          359 DLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEG----QKKLINELRNHLEDAEYKLIEGEKLRKRLHNTI  434 (461)
Q Consensus       359 ~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~----Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTI  434 (461)
                      .||+....-...+..|+.||.+..+-+.-+    .+.+.....    --..|.++++||++-|-..-+-..-+|||...|
T Consensus        38 ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~----EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~  113 (129)
T 2fxo_A           38 ELEEKMVSLLQEKNDLQLQVQAEQDNLADA----EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC  113 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445556666666655444322    122222222    226789999999999999999999999999999


Q ss_pred             hhhcccc
Q 012561          435 LELEVNL  441 (461)
Q Consensus       435 LELKGNI  441 (461)
                      -+|+-.|
T Consensus       114 ~~Lk~~l  120 (129)
T 2fxo_A          114 SELKRDI  120 (129)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988655

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=95.05  E-value=0.0032  Score=63.38  Aligned_cols=27  Identities=15%  Similarity=-0.031  Sum_probs=24.4

Q ss_pred             HhHHhhhhhhhhhcccceeeeeeccCCC
Q 012561          425 KLRKRLHNTILELEVNLSSSALFRRGLK  452 (461)
Q Consensus       425 kLRKKLHNTILELKGNIRv~crvrp~l~  452 (461)
                      .+|+++||...| +|||||||||||+.+
T Consensus        38 ~~~~~~~~~~~~-~~~I~V~vRvRP~~~   64 (387)
T 2heh_A           38 ECHPLTMTDPIE-EHRICVCVRKRPLNK   64 (387)
T ss_dssp             CCBCCCTTSCCC-CCSEEEEEEECCCCH
T ss_pred             ccCCCccCCCCC-CCCeEEEEECCCCCh
Confidence            368999999988 999999999999975

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=95.00  E-value=2  Score=39.01  Aligned_cols=107  Identities=25%  Similarity=0.360  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHH
Q 012561          216 SLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQ  295 (461)
Q Consensus       216 ~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq  295 (461)
                      ....||+++..|...+...+.-.+-..||     .|+||--.+|  |.-+.+|--. --|||.+|||+|+.-=|   .|.
T Consensus        57 ~HQKEi~~Lrae~~~~QRn~~K~~~~Lkr-----n~~qQnQQSl--DiRKLrELEA-DLKEKDsMVe~LT~TiG---~Lr  125 (167)
T 4gkw_A           57 AHQKEIGKLRAELGTAQRNLEKADQLLKR-----NSQQQNQQSL--DMRKLGELEA-DLKEKDSMVESLTETIG---ILR  125 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH--HHHHTHHHHH-THHHHHHHHHHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHh-----hhHHHhHhhh--hHHHHHHHHh-HHhhhhHHHHHHHHHHH---HHH
Confidence            34567777777777776666666655555     2445543332  4444444322 34899999999876554   455


Q ss_pred             HHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhh
Q 012561          296 EQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDR  333 (461)
Q Consensus       296 ~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDR  333 (461)
                      ..|.-.|.--+|.|---+.|--|-+.+..-|+-.|..|
T Consensus       126 KELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~QR  163 (167)
T 4gkw_A          126 KELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQR  163 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhc
Confidence            56666666666666555556555555555555554433

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.82  E-value=0.22  Score=42.69  Aligned_cols=71  Identities=20%  Similarity=0.346  Sum_probs=51.7

Q ss_pred             HHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHhHH
Q 012561          280 IVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ-------ALTAEVIKHKE  352 (461)
Q Consensus       280 ivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq-------sL~aE~~~ykE  352 (461)
                      +---+.+|+|...||..+|+-+...-..++++.   ..-|..|-.+|+++|.|=.+++.+-|       +|..||++|+-
T Consensus        48 L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~---q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk  124 (129)
T 3tnu_B           48 LRAEIDNVKKQCANLQNAIADAEQRGELALKDA---RNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333466778888888888888777766666554   44456788889999988887766654       67789999975


Q ss_pred             h
Q 012561          353 L  353 (461)
Q Consensus       353 l  353 (461)
                      |
T Consensus       125 L  125 (129)
T 3tnu_B          125 L  125 (129)
T ss_dssp             T
T ss_pred             h
Confidence            3

>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=94.80  E-value=0.043  Score=55.07  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.9

Q ss_pred             HHhhhhhhhhhcccceeeeeeccC
Q 012561          427 RKRLHNTILELEVNLSSSALFRRG  450 (461)
Q Consensus       427 RKKLHNTILELKGNIRv~crvrp~  450 (461)
                      ||||-|+|-||||.||+|+-+-+=
T Consensus        47 RRkLENSIdElKG~IRcFAYi~~~   70 (333)
T 4etp_B           47 SRRLENSIIEQKGTMRVYAYVMEQ   70 (333)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEECCS
T ss_pred             HHHHhhhHHHhcCcEEEEEEECcc
Confidence            789999999999999999998763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.72  E-value=0.17  Score=50.64  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=15.1

Q ss_pred             hhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccc
Q 012561          397 TEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNL  441 (461)
Q Consensus       397 te~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNI  441 (461)
                      ..++++++.+.+++.-++.          ++.++-.-+-++.||-
T Consensus       551 ~~~~~~~~~~~~l~~e~~~----------~~~~~~~l~~~~~~~~  585 (597)
T 3oja_B          551 KQLDNKRAKQAELRQETSL----------KRQKVKQLEAKKNRNP  585 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTTC---
T ss_pred             HHHhhhhhHHHHHHHHHHH----------HHHHHHHHHHHhcCCC
Confidence            3344444445444444433          4444444445566664

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.64  E-value=0.6  Score=52.40  Aligned_cols=20  Identities=5%  Similarity=0.134  Sum_probs=9.3

Q ss_pred             HHHhhhhhHHHHHHHhhhhh
Q 012561          268 ESIKRGEKEKSAIVENLSTL  287 (461)
Q Consensus       268 e~~~r~eKEK~tivEnls~L  287 (461)
                      +.++.+++|++-+-..+..|
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44555555554444444333

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=94.19  E-value=0.24  Score=40.05  Aligned_cols=67  Identities=19%  Similarity=0.347  Sum_probs=52.8

Q ss_pred             hhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHhHHh
Q 012561          284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ-------ALTAEVIKHKEL  353 (461)
Q Consensus       284 ls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq-------sL~aE~~~ykEl  353 (461)
                      +.+|+|...||..+|+-+...-.-++++   +..-+..|-.+|+++|.|-.+++.+-|       +|..||++|+-|
T Consensus         3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~---~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkL   76 (84)
T 1gk4_A            3 VDALKGTNESLERQMREMEENFAVEAAN---YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL   76 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            5678999999999999888776665544   555666777899999999888887766       567899999863

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=94.19  E-value=0.0089  Score=60.64  Aligned_cols=26  Identities=15%  Similarity=-0.067  Sum_probs=23.5

Q ss_pred             hHHhhhhhhhhhcccceeeeeeccCCC
Q 012561          426 LRKRLHNTILELEVNLSSSALFRRGLK  452 (461)
Q Consensus       426 LRKKLHNTILELKGNIRv~crvrp~l~  452 (461)
                      +|+..||...| +|||||||||||+.+
T Consensus        59 ~~~~~~~~~~~-~~~I~V~vRvRPl~~   84 (410)
T 1v8k_A           59 CSPLTVTDPIE-EHRICVCVRKRPLNK   84 (410)
T ss_dssp             CCTTTTTCTTS-CCCEEEEEEECCCCH
T ss_pred             cCCCccCCcCC-CCCeEEEEEeCCCCh
Confidence            48889999888 999999999999975

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=93.83  E-value=0.012  Score=59.94  Aligned_cols=20  Identities=15%  Similarity=-0.006  Sum_probs=16.7

Q ss_pred             hhhhhcccceeeeeeccCCC
Q 012561          433 TILELEVNLSSSALFRRGLK  452 (461)
Q Consensus       433 TILELKGNIRv~crvrp~l~  452 (461)
                      +-.+++|||||||||||+++
T Consensus        32 ~~~~~~~~vrV~vRvRP~~~   51 (443)
T 2owm_A           32 VSKDPGANVRVVVRVRAFLP   51 (443)
T ss_dssp             --CCCCEECEEEEEEECCCH
T ss_pred             ccCCCCCCeEEEEEeCCCCh
Confidence            44689999999999999975

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=93.78  E-value=4.1  Score=37.54  Aligned_cols=88  Identities=16%  Similarity=0.186  Sum_probs=48.7

Q ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHH
Q 012561          160 ALRNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASIN  239 (461)
Q Consensus       160 ~lk~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slq  239 (461)
                      ++.-..-.+...+.||+..|..|+..-..-+-+.+..=..+.-|+..|.-.+...+.|..-+.-++.|+.+...+...+.
T Consensus        38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~  117 (168)
T 3o0z_A           38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE  117 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444555555555555555555555555555555555566666666666666666655555666665555555555


Q ss_pred             HHHHHHHH
Q 012561          240 DMYKLLQE  247 (461)
Q Consensus       240 DmyKRLQE  247 (461)
                      .-++.|||
T Consensus       118 ~e~r~L~E  125 (168)
T 3o0z_A          118 GERKEAQD  125 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.75  E-value=0.35  Score=41.58  Aligned_cols=68  Identities=21%  Similarity=0.246  Sum_probs=49.4

Q ss_pred             hhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHhHHh
Q 012561          283 NLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ-------ALTAEVIKHKEL  353 (461)
Q Consensus       283 nls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq-------sL~aE~~~ykEl  353 (461)
                      -+..|+|...||..+|+-+...-..++++   +..-|..|-.+|+++|.|=.+++.+-|       +|..||++|+-|
T Consensus        53 el~~l~~~~~sLE~~l~e~e~~~~~~l~~---~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkL  127 (131)
T 3tnu_A           53 ELQSQLSMKASLENSLEETKGRYCMQLAQ---IQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRL  127 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35667777888888887777766666554   444556778888888888777766655       677899999863

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.49  E-value=16  Score=45.90  Aligned_cols=47  Identities=15%  Similarity=0.169  Sum_probs=24.8

Q ss_pred             HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q 012561          294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQV  340 (461)
Q Consensus       294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qv  340 (461)
                      |+++.+......+-|.+=-..|..|=.+--..+.+.....+.-+..+
T Consensus      2061 L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A         2061 IKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence            33444444444555555555666665555555555555555554444

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=93.43  E-value=0.29  Score=39.88  Aligned_cols=66  Identities=24%  Similarity=0.305  Sum_probs=46.0

Q ss_pred             hhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHhHH
Q 012561          284 LSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQ-------ALTAEVIKHKE  352 (461)
Q Consensus       284 ls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~Qvq-------sL~aE~~~ykE  352 (461)
                      +.+|++...||..+|+-....-.-   +.+.+..-+..|-.+|+++|.|-.+++..-|       +|..||++|+-
T Consensus         5 ie~L~~q~~~Le~~l~e~E~~~~~---~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRk   77 (86)
T 1x8y_A            5 LSQLQCQLAAKEAKLRDLEDSLAR---ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK   77 (86)
T ss_dssp             -------CTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            567889999999999888776544   4455666677778899999999888877766       56789999986

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=93.19  E-value=4.7  Score=36.47  Aligned_cols=130  Identities=17%  Similarity=0.298  Sum_probs=81.3

Q ss_pred             hHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHH
Q 012561          293 SLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIR  372 (461)
Q Consensus       293 SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~  372 (461)
                      .|..||.-+       ...-+.--.||.++-++|.+.-+-=+-.-+.+..|..++..-   .....+||-.+.--+++-.
T Consensus         4 ~lE~qlkea-------ae~ad~KyeEvaR~E~dLEraEERae~aE~k~~eLEeeL~~v---~~nlKsLE~seekasqrEd   73 (155)
T 2efr_A            4 QLEDKVEEL-------LSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTV---TNNLKSLEAQAEKYSQKED   73 (155)
T ss_dssp             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhccchhhhhHHHHHHH
Confidence            455566655       344444455787777777776655555556666666665443   3456668887777777778


Q ss_pred             HHHHHHHHHHhhhhhhchhhhhhhhhhHHhHHHHHHHHHhHHHHhhhhhhh----HHhHHhhhhhhhhhcc
Q 012561          373 SLSDQLAAAEEKLEVSDLSALETKTEFEGQKKLINELRNHLEDAEYKLIEG----EKLRKRLHNTILELEV  439 (461)
Q Consensus       373 ~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk~~i~eLq~RLadaE~kiiEG----EkLRKKLHNTILELKG  439 (461)
                      .++.|+.....||+-|+     +|.+|.+  +.+.-|+.-+.+.|-.|...    ..+...|.+|+.||.|
T Consensus        74 ~yEeqIk~L~~kLKEAE-----~RAE~AE--Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~  137 (155)
T 2efr_A           74 KYEEEIKVLSDKLKEAE-----TRAEFAE--RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE  137 (155)
T ss_dssp             HHHHHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888888765     4444443  33444444444444444333    2466778889999877

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=93.16  E-value=1.9  Score=36.67  Aligned_cols=64  Identities=19%  Similarity=0.345  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHH
Q 012561          171 IIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEEL-QSANQR  234 (461)
Q Consensus       171 ~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~-~~anqq  234 (461)
                      .+..+|..+..|+..+...+.+.......+.+|+..|..+|+....+..||+-+..-+ ..||.-
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~M   70 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM   70 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888899999999999999999999999999999999999999999999887655 234443

>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1

Probab=92.41  E-value=2.7  Score=35.88  Aligned_cols=85  Identities=29%  Similarity=0.368  Sum_probs=58.7

Q ss_pred             hhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH--hhhhhhHHHHHHhhH
Q 012561          290 QYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE--LAVSSEDLEARCASQ  367 (461)
Q Consensus       290 ~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE--l~~k~~~LEetCssQ  367 (461)
                      ...||+.-|..-|.||++-+|||+.|.+=+.+||+|=    ..|.+.+..+++--.|+-+-=+  -+++ -+||...|--
T Consensus         5 ~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~----~~R~~~i~el~akidd~Lk~l~~EklAk-ldLE~RLsKt   79 (101)
T 1d7m_A            5 RLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEG----AEREKRLRELEAKLDETLKNLELEKLAR-MELEARLAKT   79 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHhhh
Confidence            4567888999999999999999999999999999875    5688888888876655544333  1222 2455555444


Q ss_pred             HHHHHHHHHHHH
Q 012561          368 SNQIRSLSDQLA  379 (461)
Q Consensus       368 ~eqI~~Lq~QLa  379 (461)
                      .+--..|+-.|+
T Consensus        80 EKDkAiLELkLa   91 (101)
T 1d7m_A           80 EKDRAILELKLA   91 (101)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            444444444444

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=90.88  E-value=5.4  Score=36.08  Aligned_cols=106  Identities=17%  Similarity=0.206  Sum_probs=73.9

Q ss_pred             HHHhhhhhhhhhhHHHHHHHHHHHHHhHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhchhhhhhhhhhHHhH
Q 012561          324 VELQQVRDDRDHQLSQVQALTAEVIKHKELAVSSEDLEARCASQSNQIRSLSDQLAAAEEKLEVSDLSALETKTEFEGQK  403 (461)
Q Consensus       324 ~ELqqvRdDRDr~~~QvqsL~aE~~~ykEl~~k~~~LEetCssQ~eqI~~Lq~QLa~A~eKLk~aDlsa~etrte~E~Qk  403 (461)
                      ..|+...+|=|+....|..+..++..-.          +.......+|..|+.+|.++...||.-..+....-.--+...
T Consensus         7 ~qlkeaae~ad~KyeEvaR~E~dLEraE----------ERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yE   76 (155)
T 2efr_A            7 DKVEELLSKNYHLENEVARLKKLLERAE----------ERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYE   76 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence            3444446788888888777666665544          455555556677777777777777665554443333334445


Q ss_pred             HHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcc
Q 012561          404 KLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEV  439 (461)
Q Consensus       404 ~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKG  439 (461)
                      ..|..|..+|.+||.+.=.+|.-=.||.-+|-.|..
T Consensus        77 eqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd  112 (155)
T 2efr_A           77 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED  112 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999988899888877643

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=89.07  E-value=13  Score=33.81  Aligned_cols=132  Identities=17%  Similarity=0.178  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHchH-HHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHH----------H-HHHHHH
Q 012561          142 RLRNALELSEQKCAEMELALRNKE-EELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAR----------E-KETRLN  209 (461)
Q Consensus       142 kL~~~Le~~ek~~~e~E~~lk~k~-eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~k----------E-kEaR~~  209 (461)
                      .+.++++..-..|..+-..|.+.+ +.|...+.++++..-.+.+.+.+.+.+...+...+.|          | ..|+..
T Consensus        80 ~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~  159 (305)
T 2efl_A           80 SNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQY  159 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555655555554443 5566655555443333333333333333333322221          1 122333


Q ss_pred             HHHHHhhh---HHHHHHHHHHHHHHHHHhHhHHHHHHH-HHHHHhH-HHhhhhhhhccHHHHHHHHhhhhhHH
Q 012561          210 MERSHASL---SEDLGKAQEELQSANQRIASINDMYKL-LQEYNSS-LQHYNTKLQKDIDAAHESIKRGEKEK  277 (461)
Q Consensus       210 ~E~~~~~L---seeL~k~q~E~~~anqqi~slqDmyKR-LQEYNTS-LQQYNSkLQaDl~~~~e~~~r~eKEK  277 (461)
                      .+++....   ..+++|++.....+.+++....+-|+. ++.+|.. -+.    ...++..+-+.+..++.+.
T Consensus       160 ~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~----~~~~~~~~~~~lQ~le~~r  228 (305)
T 2efl_A          160 FEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEY----YHTHIPNIFQKIQEMEERR  228 (305)
T ss_dssp             HHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            33322211   146788887777777766655544432 4444443 222    3455555555555555544

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=88.47  E-value=11  Score=32.65  Aligned_cols=98  Identities=20%  Similarity=0.210  Sum_probs=71.1

Q ss_pred             hhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH----hhhhhhHH
Q 012561          285 STLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE----LAVSSEDL  360 (461)
Q Consensus       285 s~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE----l~~k~~~L  360 (461)
                      ..|+..++.|..-++..|.--..   .+......+..|..||.+.|+.++.....+..|.-.+--|.-    ...-...|
T Consensus         6 rdL~~~~~~L~~E~e~~k~K~~~---~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~   82 (111)
T 2v66_B            6 RDLQADNQRLKYEVEALKEKLEH---QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF   82 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence            34556666666666665554322   445566778888889999999999999888888877766644    55666778


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhhh
Q 012561          361 EARCASQSNQIRSLSDQLAAAEEKLE  386 (461)
Q Consensus       361 EetCssQ~eqI~~Lq~QLa~A~eKLk  386 (461)
                      |..+..-.|+.-.|+..|. .++.|+
T Consensus        83 E~k~n~aiErnalLE~El~-EKe~L~  107 (111)
T 2v66_B           83 EQRLNQAIERNAFLESELD-EKESLL  107 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            8889999999999999987 444444

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.09  E-value=15  Score=33.33  Aligned_cols=128  Identities=19%  Similarity=0.257  Sum_probs=80.5

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhh
Q 012561          214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS  293 (461)
Q Consensus       214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~S  293 (461)
                      ++.|-++|-.++.++.++..+|..++....++                         ..+..+++.       ....++.
T Consensus        15 qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~-------------------------~~l~~~~~~-------~~~e~~~   62 (154)
T 2ocy_A           15 QSHLEEQLNKSLKTIASQKAAIENYNQLKEDY-------------------------NTLKRELSD-------RDDEVKR   62 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH-------------------------HHHHTHHHH-------HHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHhh-------hhHHHHH
Confidence            56677777777777777766666666543332                         222223332       3334455


Q ss_pred             HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhHH-hhhhhhHHHHHHhhHHHHHH
Q 012561          294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIKHKE-LAVSSEDLEARCASQSNQIR  372 (461)
Q Consensus       294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~ykE-l~~k~~~LEetCssQ~eqI~  372 (461)
                      |+..|.-.+....+|=+.+..+-.||+.|=+-|=          .+.+..-++-.+-.. +-.|...|++..---...|.
T Consensus        63 L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLF----------eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~  132 (154)
T 2ocy_A           63 LREDIAKENELRTKAEEEADKLNKEVEDLTASLF----------DEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD  132 (154)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6678888888888888999999999988887662          223322222211111 44466777777777777888


Q ss_pred             HHHHHHHHHHh
Q 012561          373 SLSDQLAAAEE  383 (461)
Q Consensus       373 ~Lq~QLa~A~e  383 (461)
                      +||.||..-+.
T Consensus       133 ~lq~ql~~LK~  143 (154)
T 2ocy_A          133 TLTLQLKNLKK  143 (154)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888876543

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=87.17  E-value=9.1  Score=32.63  Aligned_cols=85  Identities=27%  Similarity=0.376  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 012561          170 LIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYN  249 (461)
Q Consensus       170 ~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYN  249 (461)
                      .-|.|||+++.+|+-.|..-.+-|. +++.--.|.|+|-..+-  ..+..-|..+..++..+      =+||-.-++||.
T Consensus        36 ~Ei~elrr~iq~L~~el~~l~~~~~-~LE~~l~e~e~~~~~~l--~~~q~~i~~lE~eL~~~------r~e~~~ql~EYq  106 (129)
T 3tnu_B           36 HEISEMNRMIQRLRAEIDNVKKQCA-NLQNAIADAEQRGELAL--KDARNKLAELEEALQKA------KQDMARLLREYQ  106 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHH------HHHHHHHHHHHH
Confidence            3467777777777777766655543 33444445555543321  11222222233333222      146666788886


Q ss_pred             hHHHhhhhhhhccHHHH
Q 012561          250 SSLQHYNTKLQKDIDAA  266 (461)
Q Consensus       250 TSLQQYNSkLQaDl~~~  266 (461)
                         ..-|-|+.=|++.+
T Consensus       107 ---~LlnvKl~Ld~EIa  120 (129)
T 3tnu_B          107 ---ELMNTKLALDVEIA  120 (129)
T ss_dssp             ---HHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHH
Confidence               34577766666544

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=87.09  E-value=13  Score=31.69  Aligned_cols=80  Identities=16%  Similarity=0.211  Sum_probs=39.7

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhh
Q 012561          210 MERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRG  289 (461)
Q Consensus       210 ~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG  289 (461)
                      .|.....|..+...++..+++-..-+...++++.||+.=..-|..==.-|+.+++...+....+..+|.-+-..++.|+.
T Consensus        39 le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~  118 (129)
T 2fxo_A           39 LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR  118 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555544443333333334444455555555555555555555554444

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=85.56  E-value=22  Score=38.07  Aligned_cols=117  Identities=22%  Similarity=0.210  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 012561          168 LNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQE  247 (461)
Q Consensus       168 L~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQE  247 (461)
                      +...|.+||.++..++..-+.-++--..-++.+++........+..-..+++||++-...++.   +             
T Consensus        62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKe---k-------------  125 (562)
T 3ghg_A           62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKR---K-------------  125 (562)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHH---H-------------
T ss_pred             HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH---H-------------
Confidence            334444444444444332222222222333444444344445555566666676665444332   1             


Q ss_pred             HHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhh----------hhhhhhHHHHHHHh
Q 012561          248 YNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTL----------RGQYISLQEQLSTY  301 (461)
Q Consensus       248 YNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~L----------rG~~~SLq~QL~~s  301 (461)
                      -|+-|++- ..||+-+..-.-.|+|||.-=++-++.--+=          .+.|..+|-||.-.
T Consensus       126 VdnQlsnI-rvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv  188 (562)
T 3ghg_A          126 VIEKVQHI-QLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV  188 (562)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence            11222222 4678888888888888887766666553321          34577888888654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=84.58  E-value=16  Score=30.29  Aligned_cols=90  Identities=20%  Similarity=0.124  Sum_probs=70.0

Q ss_pred             HhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhh
Q 012561          214 HASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYIS  293 (461)
Q Consensus       214 ~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~S  293 (461)
                      ...|.-|.+.+......+..+++..++-+..+-+=.+|||.=|..|..|++.+                           
T Consensus        11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~---------------------------   63 (101)
T 3u1c_A           11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV---------------------------   63 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence            35566777778888888888888888888888888888888888888888875                           


Q ss_pred             HHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhh
Q 012561          294 LQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRD  331 (461)
Q Consensus       294 Lq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRd  331 (461)
                       +.+|..++...+++-+.....-.||.+|-.-+|.+=+
T Consensus        64 -ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE  100 (101)
T 3u1c_A           64 -LEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE  100 (101)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence             4466666777777877788888888888777776644

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=83.87  E-value=7.8  Score=31.59  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=51.1

Q ss_pred             HHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 012561          269 SIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVI  348 (461)
Q Consensus       269 ~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~  348 (461)
                      .+..+..+|+.++--+.++++       .++--|.--++.+..+..+-+++..||.++..+.=-|=..-++|.+|..|+.
T Consensus         8 qi~~l~~e~~~l~~e~dn~~~-------~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~   80 (86)
T 3swk_A            8 QVDQLTNDKARVEVERDNLAE-------DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA   80 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445556665555555444       4555556667777778888888888888887777777777777777777776


Q ss_pred             HhH
Q 012561          349 KHK  351 (461)
Q Consensus       349 ~yk  351 (461)
                      -.|
T Consensus        81 fLk   83 (86)
T 3swk_A           81 FLK   83 (86)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.40  E-value=10  Score=32.49  Aligned_cols=85  Identities=27%  Similarity=0.339  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 012561          170 LIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYN  249 (461)
Q Consensus       170 ~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYN  249 (461)
                      .-|.|||+++.+|+-.|..-.+-| ++++.--.|-|+|-..+-.  .+..-|..+..++..+      =+||-..++||.
T Consensus        38 ~Ei~elrr~iq~L~~el~~l~~~~-~sLE~~l~e~e~~~~~~l~--~~q~~i~~lE~eL~~~------r~em~~ql~EYq  108 (131)
T 3tnu_A           38 SEISELRRTMQNLEIELQSQLSMK-ASLENSLEETKGRYCMQLA--QIQEMIGSVEEQLAQL------RCEMEQQNQEYK  108 (131)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            346777788888877776655544 3344444455555443221  1222222222222222      246667788886


Q ss_pred             hHHHhhhhhhhccHHHH
Q 012561          250 SSLQHYNTKLQKDIDAA  266 (461)
Q Consensus       250 TSLQQYNSkLQaDl~~~  266 (461)
                         ..-|-|+.=|++.+
T Consensus       109 ---~Ll~vKl~Ld~EIa  122 (131)
T 3tnu_A          109 ---ILLDVKTRLEQEIA  122 (131)
T ss_dssp             ---HHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHH
Confidence               34567766666544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.35  E-value=14  Score=36.45  Aligned_cols=51  Identities=14%  Similarity=0.150  Sum_probs=32.8

Q ss_pred             ccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHhHhhHHHHHHhhHHHHHH
Q 012561          261 KDIDAAHESIKRGEKEKSAIVENLSTLRGQYISLQEQLSTYKASQDEAMRQKDALVHE  318 (461)
Q Consensus       261 aDl~~~~e~~~r~eKEK~tivEnls~LrG~~~SLq~QL~~skaSq~Ea~kQK~~L~~E  318 (461)
                      .|.+...+.+.++.+|++..-.-+.       .+..+++.+++..++|+.++..|+.-
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (487)
T 3oja_A          435 RDWDMYQHKETQLAEENARLKKLNG-------EADLALASANATLQELVVREQNLASQ  485 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhhhhhhhh-------hhhhhhHhcccHHHHHHHHHHHHHHh
Confidence            4444445555555555555444443       44458888999999999988877653

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.24  E-value=8.3  Score=34.45  Aligned_cols=63  Identities=19%  Similarity=0.370  Sum_probs=50.4

Q ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 012561          162 RNKEEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLNMERSHASLSEDLGKAQEEL  228 (461)
Q Consensus       162 k~k~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~~E~~~~~LseeL~k~q~E~  228 (461)
                      +.++.+++.    ++..+..|...|.....+.......+.+|+..|..+|+....+..||+-+..-+
T Consensus        21 ~~~~~~le~----l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL   83 (135)
T 2e7s_A           21 KAAIENYNQ----LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL   83 (135)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555544    455666777777888888888999999999999999999999999999887654

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=82.42  E-value=8.9  Score=40.91  Aligned_cols=94  Identities=18%  Similarity=0.212  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhHHHhhhhhhhccHHHHHHHHhhhhhHHHHHHHhhhhhhhhhh-hHHHHHHHhHhhHHHHHHhhHHHHHH
Q 012561          240 DMYKLLQEYNSSLQHYNTKLQKDIDAAHESIKRGEKEKSAIVENLSTLRGQYI-SLQEQLSTYKASQDEAMRQKDALVHE  318 (461)
Q Consensus       240 DmyKRLQEYNTSLQQYNSkLQaDl~~~~e~~~r~eKEK~tivEnls~LrG~~~-SLq~QL~~skaSq~Ea~kQK~~L~~E  318 (461)
                      |+-+|+.+-...|-+| ++...|+...-..+...-+++.+-...+.+....|. .|..++...|.-.+.-+.+...|.+=
T Consensus        61 DltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn  139 (562)
T 3ghg_A           61 DFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN  139 (562)
T ss_dssp             HHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444 444444444433343333344444445555666676 88888888888888888888888888


Q ss_pred             HHHHHHHHhhhhhhhh
Q 012561          319 VASMRVELQQVRDDRD  334 (461)
Q Consensus       319 v~~LR~ELqqvRdDRD  334 (461)
                      |..+|.++|++--|=|
T Consensus       140 Ledq~~kIQRLEvDId  155 (562)
T 3ghg_A          140 VRAQLVDMKRLEVDID  155 (562)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888887765544

>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}

Probab=81.18  E-value=16  Score=31.52  Aligned_cols=86  Identities=19%  Similarity=0.182  Sum_probs=61.1

Q ss_pred             HHHHHhHHHhhHHHHHHhhHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhHHHhhhhhhh
Q 012561          182 LQEKLAKEESDKLAALDSLAREKE-TRLNMERSHASLSEDLGKAQEELQSANQRIASINDMYKLLQEYNSSLQHYNTKLQ  260 (461)
Q Consensus       182 Lqe~L~keeseKl~a~~s~~kEkE-aR~~~E~~~~~LseeL~k~q~E~~~anqqi~slqDmyKRLQEYNTSLQQYNSkLQ  260 (461)
                      .-.+|.||++       +|.+|.+ ...-+++..+. ..|--.++.....+..=..|+-|+++||+..-..|++|=....
T Consensus        16 ~vkRL~KE~~-------~Y~kE~~~q~~kiekmk~e-~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~~~   87 (116)
T 3mxz_A           16 TCKRIVKELH-------SYEKEVEREAAKTADMKDK-GADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAELE   87 (116)
T ss_dssp             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Confidence            3346666653       6777764 55556666653 3455677778888888899999999999999999999754432


Q ss_pred             -------ccHHHHHHHHhhhhh
Q 012561          261 -------KDIDAAHESIKRGEK  275 (461)
Q Consensus       261 -------aDl~~~~e~~~r~eK  275 (461)
                             .++..|.++|+.+++
T Consensus        88 ~~~~~~~ee~~~Ak~~l~~ae~  109 (116)
T 3mxz_A           88 ETDEKEGPEIEDAKKTVADVEK  109 (116)
T ss_dssp             TC-CCCCHHHHHHHHHHHHHHT
T ss_pred             ccCCCChHHHHHHHHHHHHHHH
Confidence                   256677777766554

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=80.76  E-value=25  Score=29.79  Aligned_cols=55  Identities=22%  Similarity=0.288  Sum_probs=43.2

Q ss_pred             hhHHHHHHHhHhhHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 012561          292 ISLQEQLSTYKASQDEAMRQKDALVHEVASMRVELQQVRDDRDHQLSQVQALTAEVIK  349 (461)
Q Consensus       292 ~SLq~QL~~skaSq~Ea~kQK~~L~~Ev~~LR~ELqqvRdDRDr~~~QvqsL~aE~~~  349 (461)
                      .-..-||+.++.+|.++.+.|..|.++|..+.  +++.++- ..+..+|.+|..|+..
T Consensus        11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~--~~~~~k~-~eq~~~le~lk~eL~~   65 (107)
T 2no2_A           11 AEVTKQVSMARQAQVDLEREKKELEDSLERIS--DQGQRKT-QEQLEVLESLKQELAT   65 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHH
Confidence            44567999999999999999999999998876  4444444 3456788888888776

>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1

Probab=80.32  E-value=44  Score=32.29  Aligned_cols=43  Identities=16%  Similarity=0.287  Sum_probs=29.6

Q ss_pred             hhhhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhh
Q 012561          395 TKTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILEL  437 (461)
Q Consensus       395 trte~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILEL  437 (461)
                      -...++.-..++..-..+|.++-.+....|.|++.+|...-++
T Consensus       337 L~~~w~~L~~~~~~R~~~L~~~l~~~~~~~~L~~~F~~~a~~~  379 (476)
T 1hci_A          337 LRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAI  379 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3445666666777777788887777777777888777655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	461
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	7e-05

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.6 bits (99), Expect = 7e-05
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 396 KTEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVN 440
           +   E   +   +    LE  + +L +    RK LHNT+++L  N
Sbjct: 2   RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGN 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	461
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	99.0
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	89.96

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=9.2e-11  Score=112.13  Aligned_cols=57  Identities=25%  Similarity=0.307  Sum_probs=53.1

Q ss_pred             hhhHHhHHHHHHHHHhHHHHhhhhhhhHHhHHhhhhhhhhhcccceeeeeeccCCCC
Q 012561          397 TEFEGQKKLINELRNHLEDAEYKLIEGEKLRKRLHNTILELEVNLSSSALFRRGLKD  453 (461)
Q Consensus       397 te~E~Qk~~i~eLq~RLadaE~kiiEGEkLRKKLHNTILELKGNIRv~crvrp~l~~  453 (461)
                      +|.++-++.++.+...+++++-|+++.+-.||||||.++||||||||||||||+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gnIkV~vRvRP~~~~   59 (368)
T d2ncda_           3 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLES   59 (368)
T ss_dssp             SSSGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCGG
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCEEEEEEeCCCCch
Confidence            567788899999999999999999999999999999999999999999999998763

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=4.6  Score=33.63  Aligned_cols=160  Identities=18%  Similarity=0.195  Sum_probs=78.3

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---------------------------HHHHHHhhHHHHHHHHHc
Q 012561          111 RCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRN---------------------------ALELSEQKCAEMELALRN  163 (461)
Q Consensus       111 r~EqM~dyIKrLr~CIrWfqelE~~y~~EqekL~~---------------------------~Le~~ek~~~e~E~~lk~  163 (461)
                      |+++=..+++.+..+++=-..+|..|.....+|-+                           .++..=..|..+-..|..
T Consensus        17 ~~~~~~~~~~~~~~~~~eRa~iE~eYak~L~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~h~~~a~~l~~   96 (288)
T d2efla1          17 HTQWGIDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMAS   96 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555555555555667777766666632                           222223345555555544


Q ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHhhHHHHHHHHH-----------HHHHHhhh---HHHHHHHHHHH
Q 012561          164 K-EEELNLIIVELRKSFASLQEKLAKEESDKLAALDSLAREKETRLN-----------MERSHASL---SEDLGKAQEEL  228 (461)
Q Consensus       164 k-~eEL~~~i~ELr~~~~SLqe~L~keeseKl~a~~s~~kEkEaR~~-----------~E~~~~~L---seeL~k~q~E~  228 (461)
                      . +..|...+.+.++..-.+.+...+...+-......+.+-+..-..           .++....+   ..++.|.+...
T Consensus        97 ~i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~  176 (288)
T d2efla1          97 QIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQA  176 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHH
Confidence            4 355666666666666666655555555555544444444333222           22222111   23455555555


Q ss_pred             HHHHHHhHhHHHHHHHHHHHHhHHHhhhhhh----hccHHHHHHHHhhhhhH
Q 012561          229 QSANQRIASINDMYKLLQEYNSSLQHYNTKL----QKDIDAAHESIKRGEKE  276 (461)
Q Consensus       229 ~~anqqi~slqDmyKRLQEYNTSLQQYNSkL----QaDl~~~~e~~~r~eKE  276 (461)
                      ..+.+++....      .+|..+++.||.-.    ..++...-+.+..++.+
T Consensus       177 ~~~~~~~~~a~------~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q~~e~~  222 (288)
T d2efla1         177 QIRHQMAEDSK------ADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEER  222 (288)
T ss_dssp             HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55544444332      34555555555332    24455555555444444