Citrus Sinensis ID: 012579

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
MAFTLSSPILPHKLSFSFSAAPKRSFLSSQFTFPLNRNEATRFGHFKIHCKRTNINDTREPVHQHDLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLYSPDTKVPRTGELALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRLVLPNES
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHccccccHHcHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEcccccccccccccccccccEEEEEEccccccHHHHHHHHHHHcccccccEEEEcccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEEEcccccccccccccccccccEEEEEEEccHHHccccccccEEEEEEEEccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHEEcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccEEEEEEEEEccccccccccccEccccccEEEEEEccccccccHHHHHHHHHcccccccEEEEEEccEEEEccccccccccccEEEEccccccccccccHHHccccccccccccccEEEEEccccccccccccEEEEEEcccccccccccccccccEEEEEEEEccHHHHHHHccccEEEEEEEEccHHHccccccc
maftlsspilphklsfsfsaapkrsflssqftfplnrneatrfghfkihckrtnindtrepvhqhdlptkLFISTFQHGMKTVKTLIATILIFVQIStplclvgwdfwsvfpanavlyspdtkvprtgELALRRAIPANANMKAIQASLEDISFLlripqrkpygtmegNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCikdqdpdkvsvGLASSLDTVAELELLqapglsfllpeqykkyprltgrgIVELTiekgdgssfspeaggeprktaTIQVVLDgysapltagNVAKLVIdgaydgtrlnctnqavltekgldkgsdynlpleimpsgqfeplyrtalnvqdgelpvlplSVYGAVAMahsedseeysapyqFFFYLYDkrnaglgglsfdegqfsvfgyttvgrdilpqiktgdviqsakliegqdrlvlpnes
maftlsspilphKLSFSFSAAPKRSFLSSQFTFPLNRNEATRFGHFKIHCKRTNINDTREPVHQHDLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVlyspdtkvpRTGELALRRAIPANANMKAIQASLEDISFLlripqrkpygtmEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQapglsfllpeqYKKYPRLTGRGIVELTiekgdgssfspeaggeprKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIktgdviqsakliegqdrlvlpnes
MAFTLSSPILPHKLSFSFSAAPKRSFLSSQFTFPLNRNEATRFGHFKIHCKRTNINDTREPVHQHDLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLYSPDTKVPRTGELALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRLVLPNES
*************************FLSSQFTFPLNRNEATRFGHFKIHCKRTNINDTREPVHQHDLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLYSPDTKVPRTGELALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTI*******************ATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIE***********
*********LPHKLSFSFSAAPKRSFLSSQFTFPLNRNEATRFG*********************************HGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLYSPDTKVPRTGELALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQAL***********VSVGLASSLDTVAELEL******************RLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLP**********PLYRTALNVQDGELPVLPLSVYGAVAMAHSED***YSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQD*LV*****
MAFTLSSPILPHKLSFSFSAAPKRSFLSSQFTFPLNRNEATRFGHFKIHCKRTNINDTREPVHQHDLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLYSPDTKVPRTGELALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGS***********KTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRLVLPNES
********ILPHKLSFSFSAAPKRSFLSSQFTFPLNRNEATRFGHFKIHCKRTNINDTREPVHQHDLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLYSPDTKVPRTGELALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRLV*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAFTLSSPILPHKLSFSFSAAPKRSFLSSQFTFPLNRNEATRFGHFKIHCKRTNINDTREPVHQHDLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLYSPDTKVPRTGELALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRLVLPNES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query460 2.2.26 [Sep-21-2011]
P82869466 Peptidyl-prolyl cis-trans yes no 0.978 0.965 0.690 1e-179
Q55118379 Putative thylakoid lumen N/A no 0.647 0.786 0.339 2e-36
Q9SSA5437 Peptidyl-prolyl cis-trans no no 0.719 0.757 0.302 8e-32
O49939449 Peptidyl-prolyl cis-trans N/A no 0.710 0.728 0.314 9e-32
P72704246 Probable peptidyl-prolyl N/A no 0.373 0.699 0.359 2e-19
>sp|P82869|CYP37_ARATH Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic OS=Arabidopsis thaliana GN=CYP37 PE=1 SV=3 Back     alignment and function desciption
 Score =  627 bits (1617), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 312/452 (69%), Positives = 364/452 (80%), Gaps = 2/452 (0%)

Query: 6   SSPILPHKLSFSFSAAPKRSFLSSQFTFPLNRNEATRFGHFKIHCKRTNINDTREPVHQH 65
           SS ++ H+L F   +   R FL  +   P NR  +  F   ++H   +    T+E +H  
Sbjct: 7   SSTVVSHRLFFLHPSPLNRKFLFVKPKLPFNRTNSGDF-RMRLHSTSSKTG-TKELIHSC 64

Query: 66  DLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLYSPDTKVP 125
           +      ++TF+ G K ++ L+ATILIFVQ+ +PL L G D   + PA AVLYSPDTKVP
Sbjct: 65  NSSIDSKLNTFEAGSKNLEKLVATILIFVQVWSPLPLFGLDSAYISPAEAVLYSPDTKVP 124

Query: 126 RTGELALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSI 185
           RTGELALRRAIPAN +MK IQASLEDIS+LLRIPQRKPYGTME NVKKALK+A+D+KD I
Sbjct: 125 RTGELALRRAIPANPSMKIIQASLEDISYLLRIPQRKPYGTMESNVKKALKVAIDDKDKI 184

Query: 186 LASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQA 245
           LASIP DLK+KGS LY +LIDGKGGLQAL+  IK QDPDKVS+GLA+SLDTVA+LELLQA
Sbjct: 185 LASIPVDLKDKGSELYTTLIDGKGGLQALITSIKKQDPDKVSLGLAASLDTVADLELLQA 244

Query: 246 PGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPL 305
            GLSFLLP+QY  YPRL GRG VE+TIEK DGS+FS EAGG+ RK+AT+Q+V+DGYSAPL
Sbjct: 245 SGLSFLLPQQYLNYPRLAGRGTVEITIEKADGSTFSAEAGGDQRKSATVQIVIDGYSAPL 304

Query: 306 TAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNV 365
           TAGN AKLV  GAYDG +LN  NQAV+TE G  K    ++PLE+MPSGQFEPLYRT L+V
Sbjct: 305 TAGNFAKLVTSGAYDGAKLNTVNQAVITEDGSGKVESVSVPLEVMPSGQFEPLYRTPLSV 364

Query: 366 QDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGY 425
           QDGELPVLPLSVYGAVAMAHSE+SEEYS+PYQFFFYLYDKRN+GLGGLSFDEGQFSVFGY
Sbjct: 365 QDGELPVLPLSVYGAVAMAHSENSEEYSSPYQFFFYLYDKRNSGLGGLSFDEGQFSVFGY 424

Query: 426 TTVGRDILPQIKTGDVIQSAKLIEGQDRLVLP 457
           T  G+DIL QIKTGD+I+SAKLIEGQDRL LP
Sbjct: 425 TIAGKDILGQIKTGDIIKSAKLIEGQDRLSLP 456
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|Q55118|PPI3_SYNY3 Putative thylakoid lumen peptidyl-prolyl cis-trans isomerase sll0408 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0408 PE=3 SV=2 Back     alignment and function description
>sp|Q9SSA5|CYP38_ARATH Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic OS=Arabidopsis thaliana GN=CYP38 PE=1 SV=1 Back     alignment and function description
>sp|O49939|TLP40_SPIOL Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Spinacia oleracea GN=TLP40 PE=1 SV=1 Back     alignment and function description
>sp|P72704|PPI1_SYNY3 Probable peptidyl-prolyl cis-trans isomerase sll0227 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0227 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query460
255578656403 peptidyl-prolyl cis-trans isomerase, put 0.865 0.987 0.829 0.0
302143058452 unnamed protein product [Vitis vinifera] 0.976 0.993 0.740 0.0
224128406388 predicted protein [Populus trichocarpa] 0.843 1.0 0.827 0.0
359493685400 PREDICTED: peptidyl-prolyl cis-trans iso 0.867 0.997 0.798 0.0
449463134459 PREDICTED: peptidyl-prolyl cis-trans iso 0.973 0.976 0.704 0.0
297834418463 peptidyl-prolyl cis-trans isomerase TLP3 0.976 0.969 0.694 1e-178
42564190466 peptidyl-prolyl cis-trans isomerase CYP3 0.978 0.965 0.690 1e-177
356545371439 PREDICTED: peptidyl-prolyl cis-trans iso 0.754 0.790 0.825 1e-167
356517174439 PREDICTED: peptidyl-prolyl cis-trans iso 0.936 0.981 0.694 1e-166
115472829432 Os07g0565600 [Oryza sativa Japonica Grou 0.802 0.854 0.708 1e-156
>gi|255578656|ref|XP_002530189.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] gi|223530308|gb|EEF32203.1| peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/398 (82%), Positives = 359/398 (90%)

Query: 63  HQHDLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLYSPDT 122
           ++ D+ T L  STF+HG K +++LIA ILIFVQIS+PL LVG DFWSV PA AVLYSPDT
Sbjct: 6   YRQDITTNLCTSTFEHGTKKLESLIAVILIFVQISSPLPLVGLDFWSVSPAEAVLYSPDT 65

Query: 123 KVPRTGELALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEK 182
           KVPRTGELALRRAIPAN NMKAIQ SLEDISFLLRIPQRKPYGTMEGNVKKALKIA DEK
Sbjct: 66  KVPRTGELALRRAIPANTNMKAIQNSLEDISFLLRIPQRKPYGTMEGNVKKALKIAKDEK 125

Query: 183 DSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELEL 242
           DSILASIPADLKEKGS LYASLIDGKGGLQAL++CIK+QDPDKVSVGLASSLDTVAELEL
Sbjct: 126 DSILASIPADLKEKGSALYASLIDGKGGLQALIQCIKEQDPDKVSVGLASSLDTVAELEL 185

Query: 243 LQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYS 302
           LQAPGL FLLP+QY KYPRLTGRG VE T+EK DGS+F+PEAGGE RKTA IQVVLDGYS
Sbjct: 186 LQAPGLQFLLPQQYLKYPRLTGRGTVEFTVEKADGSTFTPEAGGEERKTAKIQVVLDGYS 245

Query: 303 APLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTA 362
           APLT GN AKLV+DGAYDG +++CT+QAV+   G DK + Y++PLEI PSGQFEPLYRT 
Sbjct: 246 APLTTGNFAKLVVDGAYDGAKISCTDQAVIIGSGNDKNTGYSVPLEIKPSGQFEPLYRTT 305

Query: 363 LNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSV 422
           L+VQDGELPVLPLSVYGAVAMAHSE SEEYSAPYQFFFYLYDKRN+GLGGLSFDEGQFSV
Sbjct: 306 LSVQDGELPVLPLSVYGAVAMAHSEVSEEYSAPYQFFFYLYDKRNSGLGGLSFDEGQFSV 365

Query: 423 FGYTTVGRDILPQIKTGDVIQSAKLIEGQDRLVLPNES 460
           FGY T GRDIL QIKTGD+IQS KL+EGQDRLVLPNE+
Sbjct: 366 FGYATTGRDILSQIKTGDIIQSVKLVEGQDRLVLPNEN 403

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302143058|emb|CBI20353.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128406|ref|XP_002329154.1| predicted protein [Populus trichocarpa] gi|222869823|gb|EEF06954.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493685|ref|XP_002284643.2| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463134|ref|XP_004149289.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic-like [Cucumis sativus] gi|449521535|ref|XP_004167785.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297834418|ref|XP_002885091.1| peptidyl-prolyl cis-trans isomerase TLP38, chloroplast [Arabidopsis lyrata subsp. lyrata] gi|297330931|gb|EFH61350.1| peptidyl-prolyl cis-trans isomerase TLP38, chloroplast [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42564190|ref|NP_188171.2| peptidyl-prolyl cis-trans isomerase CYP37 [Arabidopsis thaliana] gi|148887366|sp|P82869.3|CYP37_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic; Short=PPIase CYP37; AltName: Full=Rotamase CYP37; AltName: Full=Thylakoid lumen PPIase of 38 kDa; Short=TLP38; Short=p38; Flags: Precursor gi|95147276|gb|ABF57273.1| At3g15520 [Arabidopsis thaliana] gi|332642165|gb|AEE75686.1| peptidyl-prolyl cis-trans isomerase CYP37 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356545371|ref|XP_003541117.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356517174|ref|XP_003527264.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|115472829|ref|NP_001060013.1| Os07g0565600 [Oryza sativa Japonica Group] gi|33146756|dbj|BAC79667.1| putative peptidyl-prolycis-trans isomerase protein [Oryza sativa Japonica Group] gi|50508306|dbj|BAD30115.1| putative peptidyl-prolycis-trans isomerase protein [Oryza sativa Japonica Group] gi|113611549|dbj|BAF21927.1| Os07g0565600 [Oryza sativa Japonica Group] gi|222637295|gb|EEE67427.1| hypothetical protein OsJ_24770 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query460
TAIR|locus:2090101466 AT3G15520 [Arabidopsis thalian 0.986 0.974 0.690 3.1e-161
TAIR|locus:2084138437 CYP38 "cyclophilin 38" [Arabid 0.719 0.757 0.302 2.5e-33
UNIPROTKB|P72704246 sll0227 "Probable peptidyl-pro 0.378 0.707 0.360 3e-18
TAIR|locus:2090101 AT3G15520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1570 (557.7 bits), Expect = 3.1e-161, P = 3.1e-161
 Identities = 317/459 (69%), Positives = 368/459 (80%)

Query:     1 MAFTLSSP-ILPHKLSFSFSAAPKRSFLSSQFTFPLNRNEATRFGHFKIHCKRTNIND-T 58
             MA  LSS  ++ H+L F   +   R FL  +   P NR   T  G F++    T+    T
Sbjct:     1 MASPLSSSTVVSHRLFFLHPSPLNRKFLFVKPKLPFNR---TNSGDFRMRLHSTSSKTGT 57

Query:    59 REPVHQHDLPTKLFISTFQHGMKTVKTLIATILIFVQISTPLCLVGWDFWSVFPANAVLY 118
             +E +H  +      ++TF+ G K ++ L+ATILIFVQ+ +PL L G D   + PA AVLY
Sbjct:    58 KELIHSCNSSIDSKLNTFEAGSKNLEKLVATILIFVQVWSPLPLFGLDSAYISPAEAVLY 117

Query:   119 SPDTKVPRTGELALRRAIPANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIA 178
             SPDTKVPRTGELALRRAIPAN +MK IQASLEDIS+LLRIPQRKPYGTME NVKKALK+A
Sbjct:   118 SPDTKVPRTGELALRRAIPANPSMKIIQASLEDISYLLRIPQRKPYGTMESNVKKALKVA 177

Query:   179 MDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVA 238
             +D+KD ILASIP DLK+KGS LY +LIDGKGGLQAL+  IK QDPDKVS+GLA+SLDTVA
Sbjct:   178 IDDKDKILASIPVDLKDKGSELYTTLIDGKGGLQALITSIKKQDPDKVSLGLAASLDTVA 237

Query:   239 ELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGEPRKTATIQVVL 298
             +LELLQA GLSFLLP+QY  YPRL GRG VE+TIEK DGS+FS EAGG+ RK+AT+Q+V+
Sbjct:   238 DLELLQASGLSFLLPQQYLNYPRLAGRGTVEITIEKADGSTFSAEAGGDQRKSATVQIVI 297

Query:   299 DGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPL 358
             DGYSAPLTAGN AKLV  GAYDG +LN  NQAV+TE G  K    ++PLE+MPSGQFEPL
Sbjct:   298 DGYSAPLTAGNFAKLVTSGAYDGAKLNTVNQAVITEDGSGKVESVSVPLEVMPSGQFEPL 357

Query:   359 YRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEG 418
             YRT L+VQDGELPVLPLSVYGAVAMAHSE+SEEYS+PYQFFFYLYDKRN+GLGGLSFDEG
Sbjct:   358 YRTPLSVQDGELPVLPLSVYGAVAMAHSENSEEYSSPYQFFFYLYDKRNSGLGGLSFDEG 417

Query:   419 QFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRLVLP 457
             QFSVFGYT  G+DIL QIKTGD+I+SAKLIEGQDRL LP
Sbjct:   418 QFSVFGYTIAGKDILGQIKTGDIIKSAKLIEGQDRLSLP 456
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS
GO:0006457 "protein folding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA
GO:0031977 "thylakoid lumen" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0010103 "stomatal complex morphogenesis" evidence=RCA
GO:0016556 "mRNA modification" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
TAIR|locus:2084138 CYP38 "cyclophilin 38" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P72704 sll0227 "Probable peptidyl-prolyl cis-trans isomerase sll0227" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P82869CYP37_ARATH5, ., 2, ., 1, ., 80.69020.97820.9656yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.2.10.976
4th Layer5.2.1.80.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.107.236.1
hypothetical protein (388 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_LG_II001205
RecName- Full=Photosystem II reaction center psb28 protein; (115 aa)
  ••    0.551
eugene3.00160848
hypothetical protein (215 aa)
  ••    0.539
estExt_fgenesh4_pg.C_LG_X1887
hypothetical protein (235 aa)
  ••    0.528
estExt_Genewise1_v1.C_LG_X2323
hypothetical protein (243 aa)
  ••    0.502
gw1.IX.3341.1
hypothetical protein (325 aa)
  ••    0.475
gw1.IX.3337.1
hypothetical protein (325 aa)
  ••    0.473
gw1.123.192.1
SubName- Full=Putative uncharacterized protein; (218 aa)
  ••    0.464
estExt_fgenesh4_pg.C_LG_II2380
photosystem I reaction center subunit XI (216 aa)
  •     0.464
eugene3.00130190
SubName- Full=Putative uncharacterized protein; (339 aa)
  ••    0.461
gw1.2719.1.1
annotation not avaliable (154 aa)
  •     0.461

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
cd01924176 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40 2e-53
COG0652158 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase 2e-10
pfam00160144 pfam00160, Pro_isomerase, Cyclophilin type peptidy 1e-08
cd00317146 cd00317, cyclophilin, cyclophilin: cyclophilin-typ 9e-05
cd01920155 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP 7e-04
>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 Back     alignment and domain information 
 Score =  176 bits (448), Expect = 2e-53
 Identities = 70/178 (39%), Positives = 98/178 (55%), Gaps = 15/178 (8%)

Query: 286 GEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYN- 344
           GE     TI +VLDGY+AP+TAGN   LV  G YDG   +      + + G  +G +   
Sbjct: 1   GEATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGF 60

Query: 345 ----------LPLEIMPSGQFEPLYRTALN--VQDGELPVLPLSVYGAVAMAHSEDSEEY 392
                     +PLEI P GQ +P+Y   L    +  E PVLP + +GA+AMA +E  +  
Sbjct: 61  PDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEF-DPN 119

Query: 393 SAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEG 450
           SA  QFFF L D         +  +G+++VFGY T G DIL ++K GD I+SA+++EG
Sbjct: 120 SASSQFFFLLKDNELTPSRN-NVLDGRYAVFGYVTDGLDILRELKVGDKIESARVVEG 176

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176
>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Back     alignment and domain information
>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 460
cd01924176 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc 100.0
COG0652158 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase 100.0
KOG0883518 consensus Cyclophilin type, U box-containing pepti 100.0
cd01928153 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro 100.0
cd01923159 cyclophilin_RING cyclophilin_RING: cyclophilin-typ 100.0
KOG0881164 consensus Cyclophilin type peptidyl-prolyl cis-tra 100.0
cd01927148 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ 100.0
cd01922146 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c 100.0
KOG0546 372 consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos 100.0
cd01921166 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type 100.0
KOG0880217 consensus Peptidyl-prolyl cis-trans isomerase [Pos 100.0
PRK10903190 peptidyl-prolyl cis-trans isomerase A (rotamase A) 100.0
PRK10791164 peptidyl-prolyl cis-trans isomerase B (rotamase B) 100.0
cd01925171 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: 100.0
cd01920155 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc 100.0
PTZ00060183 cyclophilin; Provisional 100.0
PTZ00221249 cyclophilin; Provisional 100.0
cd01926164 cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph 100.0
PLN03149186 peptidyl-prolyl isomerase H (cyclophilin H); Provi 100.0
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 99.98
KOG0884161 consensus Similar to cyclophilin-type peptidyl-pro 99.97
KOG0879177 consensus U-snRNP-associated cyclophilin type pept 99.97
KOG0111298 consensus Cyclophilin-type peptidyl-prolyl cis-tra 99.97
cd00317146 cyclophilin cyclophilin: cyclophilin-type peptidyl 99.97
KOG0885 439 consensus Peptidyl-prolyl cis-trans isomerase [Pos 99.97
PF00160155 Pro_isomerase: Cyclophilin type peptidyl-prolyl ci 99.96
KOG0415 479 consensus Predicted peptidyl prolyl cis-trans isom 99.95
KOG0865167 consensus Cyclophilin type peptidyl-prolyl cis-tra 99.89
TIGR03042142 PS_II_psbQ_bact photosystem II protein PsbQ. This 96.88
PRK00969 508 hypothetical protein; Provisional 95.81
PLN02956185 PSII-Q subunit 95.7
TIGR03268503 methan_mark_3 putative methanogenesis marker prote 95.44
PRK00969 508 hypothetical protein; Provisional 95.38
PF05757202 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); I 95.03
TIGR03268 503 methan_mark_3 putative methanogenesis marker prote 94.86
PLN02729220 PSII-Q subunit 94.05
PLN02999190 photosystem II oxygen-evolving enhancer 3 protein 93.67
COG4070 512 Predicted peptidyl-prolyl cis-trans isomerase (rot 93.28
KOG0882 558 consensus Cyclophilin-related peptidyl-prolyl cis- 93.27
COG4070512 Predicted peptidyl-prolyl cis-trans isomerase (rot 91.88
PF12903147 DUF3830: Protein of unknown function (DUF3830); In 84.72
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40 Back     alignment and domain information 
Probab=100.00  E-value=5.1e-41  Score=313.76  Aligned_cols=159  Identities=43%  Similarity=0.719  Sum_probs=140.0

Q ss_pred             cceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCC-----------CCCCccccCCCCCCCc
Q 012579          290 KTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSD-----------YNLPLEIMPSGQFEPL  358 (460)
Q Consensus       290 ~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G-----------~~iPlEi~~~G~~~Pi  358 (460)
                      ..|+|+|+||++.||+||+||++||+.|||||+.||||+++||+||||+.+.+           +.+|+|+...+.+.|+
T Consensus         5 ~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~~~   84 (176)
T cd01924           5 DNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQPV   84 (176)
T ss_pred             ccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCCCc
Confidence            34559999999999999999999999999999999999999999999986542           4689999988888999


Q ss_pred             cCcccccc--CCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEEeccchHHHHh
Q 012579          359 YRTALNVQ--DGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQI  436 (460)
Q Consensus       359 yg~~~ed~--~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~VveG~DVL~kI  436 (460)
                      |+.++++.  .++.+.++||.+|+|||||.+.++ ||++|||||++.+++++ +++.++|||+|+|||+|++|||||++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~-ns~~SQFfI~~~~~~~~-~~~~~~Ldg~ytVFG~VveG~dvl~~I  162 (176)
T cd01924          85 YGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDP-NSASSQFFFLLKDNELT-PSRNNVLDGRYAVFGYVTDGLDILREL  162 (176)
T ss_pred             cCcccccccccccccccccCCCCeEEEccCCCCC-CCccceEEEEecccccc-CCCCCccCCCceEEEEEecCHHHHHhh
Confidence            98776521  235677889999999999988533 69999999999976665 567999999999999999999999999


Q ss_pred             hcCCceEEEEEEeC
Q 012579          437 KTGDVIQSAKLIEG  450 (460)
Q Consensus       437 ~~GD~I~sakVv~g  450 (460)
                      +.||+|++++|++|
T Consensus       163 ~~gd~i~~~~~~~~  176 (176)
T cd01924         163 KVGDKIESARVVEG  176 (176)
T ss_pred             cCCCEEEEEEEecC
Confidence            99999999999986

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like Back     alignment and domain information
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain Back     alignment and domain information
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain Back     alignment and domain information
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2 Back     alignment and domain information
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM) Back     alignment and domain information
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional Back     alignment and domain information
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional Back     alignment and domain information
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16 Back     alignment and domain information
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E Back     alignment and domain information
>PTZ00060 cyclophilin; Provisional Back     alignment and domain information
>PTZ00221 cyclophilin; Provisional Back     alignment and domain information
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain Back     alignment and domain information
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases Back     alignment and domain information
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms Back     alignment and domain information
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ Back     alignment and domain information
>PRK00969 hypothetical protein; Provisional Back     alignment and domain information
>PLN02956 PSII-Q subunit Back     alignment and domain information
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 Back     alignment and domain information
>PRK00969 hypothetical protein; Provisional Back     alignment and domain information
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae Back     alignment and domain information
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3 Back     alignment and domain information
>PLN02729 PSII-Q subunit Back     alignment and domain information
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ) Back     alignment and domain information
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
3rfy_A369 Crystal Structure Of Arabidopsis Thaliana Cyclophil 1e-32
>pdb|3RFY|A Chain A, Crystal Structure Of Arabidopsis Thaliana Cyclophilin 38 (Atcyp38) Length = 369 Back     alignment and structure 
Iteration: 1

 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 178/367 (48%), Gaps = 39/367 (10%)
Query: 110 VFPANAVLYS-PDTKVPRTGELALRRAIPA-NANMKAIQASLEDISFLLRIPQRKPYGTM 167
           V P  +VL S P  K P   E  LR A+P  N  ++ +Q  LEDI+  L+I   K   ++
Sbjct: 19  VIPDVSVLISGPPIKDP---EALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSV 75
Query: 168 EGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVS 227
           E NV++A +     K  I+A      K+ G+ +   L   + G+Q +LK ++D+  D V+
Sbjct: 76  ERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKL---EAGMQDMLKIVEDRKRDAVA 132
Query: 228 VGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIEKGDGSSFSPEAGGE 287
                 L  V  +E     G  + +PE+Y+  P L GR  V++ ++  D  +        
Sbjct: 133 PKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDMKVKIKDNPNI------- 185
Query: 288 PRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVL--------TEKGLDK 339
             +    ++VLDGY+AP+TAGN   LV    YDG  +  ++  V+         E  +D 
Sbjct: 186 --EDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSDGFVVQTGDPEGPAEGFIDP 243
Query: 340 GSD--YNLPLEIMPSGQFEPLYRTALNVQDGELP------VLPLSVYGAVAMAHSEDSEE 391
            ++    +PLEIM +G+  P Y + L     EL       V+P + +G +AMA  E+ E 
Sbjct: 244 STEKTRTVPLEIMVTGEKTPFYGSTLE----ELGLYKAQVVIPFNAFGTMAMAR-EEFEN 298
Query: 392 YSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQ 451
            S   Q F+ L +           D G+++VFGY T   D L  +K GDVI+S +++ G 
Sbjct: 299 DSGSSQVFWLLKESELTPSNSNILD-GRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGL 357
Query: 452 DRLVLPN 458
           + L  P+
Sbjct: 358 ENLANPS 364

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query460
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 6e-92
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369 Back     alignment and structure
 Score =  282 bits (723), Expect = 6e-92
 Identities = 107/379 (28%), Positives = 172/379 (45%), Gaps = 31/379 (8%)

Query: 96  ISTPLCLVGWDFWSVFPANAVLYS-PDTKVPRTGELALRRAIPA-NANMKAIQASLEDIS 153
           IS     +      V P  +VL S P  K P      LR A+P  N  ++ +Q  LEDI+
Sbjct: 5   ISGGGGGILLVANPVIPDVSVLISGPPIKDPEA---LLRYALPIDNKAIREVQKPLEDIT 61

Query: 154 FLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILASIPADLKEKGSTLYASLIDGKGGLQA 213
             L+I   K   ++E NV++A +     K  I+A      K+ G+ +   L   + G+Q 
Sbjct: 62  DSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKL---EAGMQD 118

Query: 214 LLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGIVELTIE 273
           +LK ++D+  D V+      L  V  +E     G  + +PE+Y+  P L GR  V++ ++
Sbjct: 119 MLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDMKVK 178

Query: 274 KGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVL- 332
             D  +               ++VLDGY+AP+TAGN   LV    YDG  +  ++  V+ 
Sbjct: 179 IKDNPNIE---------DCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSDGFVVQ 229

Query: 333 ---------TEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQD--GELPVLPLSVYGAV 381
                                +PLEIM +G+  P Y + L          V+P + +G +
Sbjct: 230 TGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTM 289

Query: 382 AMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDV 441
           AMA  E   + S   Q F+ L +         +  +G+++VFGY T   D L  +K GDV
Sbjct: 290 AMAREEFEND-SGSSQVFWLLKE-SELTPSNSNILDGRYAVFGYVTDNEDFLADLKVGDV 347

Query: 442 IQSAKLIEGQDRLVLPNES 460
           I+S +++ G + L  P+  
Sbjct: 348 IESIQVVSGLENLANPSYK 366
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query460
3rfy_A369 Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; 100.0
2fu0_A160 Cyclophilin, putative; PFE0505W, cyclosporin-bindi 100.0
2ok3_A161 Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b 100.0
2x7k_A166 Peptidyl-prolyl CIS-trans isomerase-like 1; isomer 100.0
2b71_A196 Cyclophilin-like protein; structural genomics, str 100.0
3bo7_A201 Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; 100.0
2poe_A185 Cyclophilin-like protein, putative; cryptosporidiu 100.0
1zkc_A197 Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr 100.0
2a2n_A176 Peptidylprolyl isomerase domain and WD repeat CON; 100.0
2k7n_A203 Peptidyl-prolyl CIS-trans isomerase-like 1; beta b 100.0
2r99_A173 Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i 100.0
1v9t_A166 Cyclophilin B; beta barrel, isomerase-isomerase in 100.0
2z6w_A165 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
2igv_A173 Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1 100.0
2cmt_A172 Peptidyl-prolyl CIS-trans isomerase E; rotamase ac 100.0
1a58_A177 Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala 100.0
3ich_A188 Peptidyl-prolyl CIS-trans isomerase B; beta sandwi 100.0
1mzw_A177 Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc 100.0
1qng_A170 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
3pmp_A164 Cyclophilin A; peptidyl prolyl isomerase, isomeras 100.0
2wfi_A179 Peptidyl-prolyl CIS-trans isomerase G; phosphoprot 100.0
2poy_A186 Peptidyl-prolyl CIS-trans isomerase; isomerase-imm 100.0
2haq_A172 Cyclophilin; rotamase, proline, isomerase, CIS-tra 100.0
1w74_A191 Peptidyl-prolyl CIS-trans isomerase A; cyclophilin 100.0
3rdd_A184 Peptidyl-prolyl CIS-trans isomerase A; beta barrel 100.0
2he9_A192 NK-tumor recognition protein; cyclosporin, isomera 100.0
1lop_A164 Cyclophilin A; rotamase, isomerase-isomerase inhib 100.0
2hq6_A185 Serologically defined colon cancer antigen 10; pro 100.0
3s6m_A167 Peptidyl-prolyl CIS-trans isomerase; seattle struc 100.0
3k2c_A193 Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, 100.0
4fru_A185 Cyclophilin B, peptidyl-prolyl CIS-trans isomerase 100.0
3bkp_A232 Cyclophilin; malaria, isomerase, structural GENO s 100.0
2c3b_A172 Ppiase, cyclophilin; isomerase, 3D domain swapping 100.0
2ose_A234 Probable peptidyl-prolyl CIS-trans isomerase; cycl 100.0
1z81_A229 Cyclophilin; structural genomics, structural genom 100.0
1ihg_A 370 Cyclophilin 40; ppiase immunophilin tetratricopept 100.0
1vyk_A149 Oxygen-evolving enhancer protein 3; photosystem II 94.47
3zsu_A130 TLL2057 protein, cyanoq; photosystem II assembly, 93.21
3ls0_A133 SLL1638 protein, PSBQ; photosynthesis, four helix 89.56
2nnz_A153 Hypothetical protein; beta-barrel, structural geno 88.09
3kop_A188 Uncharacterized protein; protein with A cyclophili 87.35
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=4.6e-91  Score=711.77  Aligned_cols=333  Identities=31%  Similarity=0.532  Sum_probs=309.9

Q ss_pred             CCCcccccccCCCCCCCCChhhHhhhcCC-CChhHHHHHHhHhhhhhccCCCCCCCCcchhhhHHHHHHHHhhchhhHhh
Q 012579          109 SVFPANAVLYSPDTKVPRTGELALRRAIP-ANANMKAIQASLEDISFLLRIPQRKPYGTMEGNVKKALKIAMDEKDSILA  187 (460)
Q Consensus       109 ~~~~~~a~l~~p~~~~~~~~~a~LR~alP-~n~~ir~iQ~~LE~i~~~Lr~~~~k~~~~~~~~v~~a~~~l~~~~~~il~  187 (460)
                      ++.|.+|+|  |+||++|||+|||||||| +|++||+||++||+|+++||+||+|||++|++||++|+++|++++++||+
T Consensus        18 ~~~~~~~~l--~~g~~~~~~~a~lr~alp~~~~~~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~   95 (369)
T 3rfy_A           18 PVIPDVSVL--ISGPPIKDPEALLRYALPIDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVA   95 (369)
T ss_dssp             TTSCSCCEE--EESTTSCCHHHHHHHHSCCCCHHHHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTT
T ss_pred             ccCchhhcc--CCCCCCCCHHHHHhhhcCCCChhHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHh
Confidence            566788999  999999999999999999 79999999999999999999999999999999999999999999999999


Q ss_pred             cCCccchhhHHHHHHHHhcchhhHHHHHHHhhhcCCcchhhhHHhhHHHHHHHHHhhcCCCCCcCccccccCCCcCCCce
Q 012579          188 SIPADLKEKGSTLYASLIDGKGGLQALLKCIKDQDPDKVSVGLASSLDTVAELELLQAPGLSFLLPEQYKKYPRLTGRGI  267 (460)
Q Consensus       188 ~vp~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~kd~d~~~~~~~~~L~~v~~lE~~~~~~~p~~vP~ey~~lP~L~Grat  267 (460)
                      +||+++|++|+++|++|   +.+|+.|++++++||+|+|...++++|+.|++||++|+++|||+||++|.++|+|+||++
T Consensus        96 ~v~~~~~~~~~~~~~~l---~~~l~~l~~~~~~~d~~~~~~~~~~~l~~v~~le~~~~~~fp~~vP~~y~~~P~l~gra~  172 (369)
T 3rfy_A           96 GFAESKKDHGNEMIEKL---EAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRAS  172 (369)
T ss_dssp             TCCGGGHHHHHHHHHHH---HHHHHHHHCCCSSCCCSSSGGGHHHHHHHHHHHHHHSSCSSCSSCCSSCTTSCEECSEEE
T ss_pred             hcChhhHHHHHHHHHHH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhhccCCCccCchhcccCccCCCCeE
Confidence            99999999999999999   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCC-----
Q 012579          268 VELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSD-----  342 (460)
Q Consensus       268 V~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G-----  342 (460)
                      |+|+|+.++++.+         ..|+|+|+||++.||+||+||++||+.|||||+.|||| ++||+||||+.++|     
T Consensus       173 V~m~t~~~~~~~~---------~~G~I~IeL~~d~AP~Tv~NFl~L~~~GfYdGt~FHRV-~gFmIQgGDp~g~G~G~~~  242 (369)
T 3rfy_A          173 VDMKVKIKDNPNI---------EDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRS-DGFVVQTGDPEGPAEGFID  242 (369)
T ss_dssp             EEEEEECCSCSSC---------SEEEEEEEEETTTCHHHHHHHHHHHHTTTTTTEECEEE-EEEEECCCCCCCCCSCCCS
T ss_pred             EEEEEeccCCCcc---------cceEEEEEEeCCCCcHHHHHHHHHhhcCCcCCCeeeee-CCeeEecCCCCCCCCCccC
Confidence            9999998874432         57999999999999999999999999999999999999 99999999976542     


Q ss_pred             ------CCCCccccCCCCCCCccCccccccC--CCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCC
Q 012579          343 ------YNLPLEIMPSGQFEPLYRTALNVQD--GELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLS  414 (460)
Q Consensus       343 ------~~iPlEi~~~G~~~Piyg~~~ed~~--~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~  414 (460)
                            +.+|+|+...|.+.|+|+.+|++..  +..+.++||.+|+|||||++. ++||+||||||++.+++++ +++.+
T Consensus       243 ~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~-gPnSngSQFFItl~d~~L~-~~~~~  320 (369)
T 3rfy_A          243 PSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEF-ENDSGSSQVFWLLKESELT-PSNSN  320 (369)
T ss_dssp             CCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCC-CCCCSSCCCCCCCEEEEEC-SCCCS
T ss_pred             cccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCC-CCCCccceEEEEecccccC-CCCCc
Confidence                  5789999999999999999988632  135688999999999999831 1269999999999886654 67899


Q ss_pred             CCCCCccEEEEEeccchHHHHhhcCCceEEEEEEeCCcccCCCC
Q 012579          415 FDEGQFSVFGYTTVGRDILPQIKTGDVIQSAKLIEGQDRLVLPN  458 (460)
Q Consensus       415 ~LDG~ytVFG~VveG~DVL~kI~~GD~I~sakVv~g~e~l~~p~  458 (460)
                      ||||+|+|||+|++|||||++|++||+|+||+|++|.|+|++|+
T Consensus       321 ~LDgkytVFG~VveGmdVVdkI~~GD~I~sv~I~~g~~~l~~p~  364 (369)
T 3rfy_A          321 ILDGRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGLENLANPS  364 (369)
T ss_dssp             SSCSCEEEEEEEEESTTGGGGCCTTCEEEEEEEEECGGGEESCC
T ss_pred             ccCCCeeEEEEEecCHHHHHHHhCCCceEEEEEecCCccccCCc
Confidence            99999999999999999999999999999999999999999997
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Back     alignment and structure
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Back     alignment and structure
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Back     alignment and structure
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Back     alignment and structure
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Back     alignment and structure
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Back     alignment and structure
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Back     alignment and structure
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Back     alignment and structure
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Back     alignment and structure
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Back     alignment and structure
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Back     alignment and structure
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Back     alignment and structure
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Back     alignment and structure
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Back     alignment and structure
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Back     alignment and structure
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Back     alignment and structure
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A Back     alignment and structure
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Back     alignment and structure
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Back     alignment and structure
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Back     alignment and structure
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Back     alignment and structure
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Back     alignment and structure
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Back     alignment and structure
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Back     alignment and structure
>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Back     alignment and structure
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A* Back     alignment and structure
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Back     alignment and structure
>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Back     alignment and structure
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Back     alignment and structure
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Back     alignment and structure
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Back     alignment and structure
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Back     alignment and structure
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Back     alignment and structure
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A Back     alignment and structure
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus} Back     alignment and structure
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A Back     alignment and structure
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus} Back     alignment and structure
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 460
d1zkca1178 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso 3e-05
d2ok3a1159 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B 0.004
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178 Back     information, alignment and structure

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 40/177 (22%)

Query: 266 GIVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLN 325
           G V L   KGD                 + + L     P T  N  +L     YDGT  +
Sbjct: 1   GYVRLHTNKGD-----------------LNLELHCDLTPKTCENFIRLCKKHYYDGTIFH 43

Query: 326 CTNQAVLTEKGLDKGSDYNLPLEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAH 385
            + +  + + G   G+           G+           +D   P L  +  G ++MA+
Sbjct: 44  RSIRNFVIQGGDPTGT--------GTGGESYWGK----PFKDEFRPNLSHTGRGILSMAN 91

Query: 386 SEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYTTVGRDILPQIKTGDVI 442
           S      S   QFF              ++ + + ++FG    G D+L  ++  +  
Sbjct: 92  SGP---NSNRSQFFITFRS--------CAYLDKKHTIFGRVVGGFDVLTAMENVESD 137
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query460
d2ok3a1159 Cyclophilin-like protein PPIL3B {Human (Homo sapie 100.0
d2fu0a1155 Putative cyclophilin PFE0505w {Plasmodium falcipar 100.0
d2b71a1169 Cyclophilin-like protein PY00693 {Plasmodium yoeli 100.0
d1xwna1166 Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 100.0
d1lopa_164 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 100.0
d1zkca1178 Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop 100.0
d2z6wa1164 Mitochondrial peptidyl-prolyl cis-trans isomerase, 100.0
d2r99a1161 Mitochondrial peptidyl-prolyl cis-trans isomerase, 100.0
d1qnga_170 Cyclophilin (eukaryotic) {Plasmodium falciparum [T 100.0
d1v9ta_166 Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche 100.0
d1w74a_171 Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob 99.98
d2a2na1164 Peptidylprolyl isomerase domain and WD repeat-cont 99.98
d2igva1172 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 99.98
d2cfea1162 Cyclophilin-like allergen Mal s 6 {Malassezia symp 99.98
d1a33a_174 Cyclophilin (eukaryotic) {Nematode (Brugia malayi) 99.97
d1qoia_173 Cyclophilin (eukaryotic) {Human (Homo sapiens), U4 99.97
d2rmca_182 Cyclophilin (eukaryotic) {Mouse (Mus musculus), va 99.97
d1z81a1186 Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId 99.97
d1xo7a_166 Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId 99.97
d1h0pa_182 Cyclophilin (eukaryotic) {Caenorhabditis elegans, 99.97
d1ihga2195 Cyclophilin 40 isomerase domain {Cow (Bos taurus) 99.97
d2c3ba1171 Cyclophilin (eukaryotic) {Aspergillus fumigatus [T 99.97
d1nzea_112 Oxygen-evolving enhancer protein 3, {Spinach (Spin 95.59
d1zx8a1124 Hypothetical protein TM1367 {Thermotoga maritima [ 83.78
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-35  Score=264.55  Aligned_cols=143  Identities=20%  Similarity=0.265  Sum_probs=121.5

Q ss_pred             eEEEEEecCCCCCCCCCCCCCCCcceEEEEEEeCCCChHHHHHHHHHHhcCCcCCceeeEeeCCcEEecCCCCCCCCCCC
Q 012579          267 IVELTIEKGDGSSFSPEAGGEPRKTATIQVVLDGYSAPLTAGNVAKLVIDGAYDGTRLNCTNQAVLTEKGLDKGSDYNLP  346 (460)
Q Consensus       267 tV~l~T~~Gd~s~f~~~~~g~~~~~G~I~IeLd~~~AP~Ta~NFl~Lv~~GfYDGt~FhRvv~~fviQgGd~~~~G~~iP  346 (460)
                      .|.|+|++|+                 |+|+||.+.||+||+||++||+.|||||+.|||++++|++|+||+...+..  
T Consensus         2 sV~~~T~~G~-----------------i~ieL~~~~aP~tv~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~~~~--   62 (159)
T d2ok3a1           2 SVTLHTDVGD-----------------IKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG--   62 (159)
T ss_dssp             EEEEEETTEE-----------------EEEEECTTTCHHHHHHHHHHHHTTTTTTCBCCEEETTTEEEECCTTSSSSC--
T ss_pred             EEEEEeCCeE-----------------EEEEEcCCCChHHHHHHHHHHhhhcccceeEecccCCeEEEeCCccccCCC--
Confidence            4899999887                 999999999999999999999999999999999999999999997643321  


Q ss_pred             ccccCCCCCCCccCccccccCCCCCCccCCcCceEEEeccCCCCCCCCCceEEEEecCCccCCCCCCCCCCCCccEEEEE
Q 012579          347 LEIMPSGQFEPLYRTALNVQDGELPVLPLSVYGAVAMAHSEDSEEYSAPYQFFFYLYDKRNAGLGGLSFDEGQFSVFGYT  426 (460)
Q Consensus       347 lEi~~~G~~~Piyg~~~ed~~~e~p~Lp~~~~GtLAMAr~~~~~~nS~gSQFFItl~d~~~~~p~g~~~LDG~ytVFG~V  426 (460)
                              ....|+.+++.  +..+.++|+.+|+||||+.++   |+++|||||++.+        .+++||+|+|||+|
T Consensus        63 --------~~~~~~~~~~~--e~~~~~~~~~~G~lsma~~~~---~s~~sqFfIt~~~--------~p~ld~~~tvFG~V  121 (159)
T d2ok3a1          63 --------GNSIWGKKFED--EYSEYLKHNVRGVVSMANNGP---NTNGSQFFITYGK--------QPHLDMKYTVFGKV  121 (159)
T ss_dssp             --------CCCTTSSCBCC--CCCTTCCSCSTTEEEECCSST---TCBCSCEEEESSC--------CGGGTTTSCEEEEE
T ss_pred             --------CcccCCCcccc--ccccCCCCCCCeEEEEeeCCC---CCcCcceEeeecc--------CcccccceEEEEec
Confidence                    22345544443  345677899999999999875   6999999999988        88999999999999


Q ss_pred             eccchHHHHhhcC---C---------ceEEEEEEe
Q 012579          427 TVGRDILPQIKTG---D---------VIQSAKLIE  449 (460)
Q Consensus       427 veG~DVL~kI~~G---D---------~I~sakVv~  449 (460)
                      ++|||||++|+..   +         +|++++|+.
T Consensus       122 ~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~~  156 (159)
T d2ok3a1         122 IDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHA  156 (159)
T ss_dssp             EECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC
T ss_pred             ccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEEe
Confidence            9999999999862   2         488898874
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Back     information, alignment and structure
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Back     information, alignment and structure
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Back     information, alignment and structure
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Back     information, alignment and structure
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Back     information, alignment and structure
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Back     information, alignment and structure
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Back     information, alignment and structure
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure