Citrus Sinensis ID: 012618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
Protein Sequence
MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIINSATELDISPSKPRISRKSWNSSEGSSSSFKGLSAMGSFVKIAGRSSGRVTAECNEASDKLLHMDARDSPSCHVS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccccccEEcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHccccccHcccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHEEEHccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccHcHHHHccccccccEEcccccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mgqrmscrerseSALFVAVENGDLQMIEAMVEadptvlgmtsgygkQSALHLAAAYGQIEVLSMLLDQFFLYTNTDalnrykqtPLMVAAMNGKLSCVKKLIESGAFIlnfdslqgrtclhyaayyGHSDCLQALLTAartspvantwgfsrfvnirdesgatplhlAARQGWSECVHTLLdngalacsstggngypgstplhfaarGGSLECIRELLAWGadrvqpdafgrIPYAIALKYKHQACAallnpssaeplvwplqlrnmtdlNPEAKELLEKALMESNEEREKAILNEticsvpstspsdaevddntseasdVELCCICFenlctieikpcghqmcahctlalcchkkpdiitavpevpacpfcrcsIANLVAARIINsateldispskprisrkswnssegssssfkgLSAMGSFVKIagrssgrvtAECNEASDKLlhmdardspschvs
Flexible Loop (DISEMBL)
mgqrmscrersesALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNeticsvpstspsDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIINSateldispskprisrkswnssegssssfkgLSAMGSFVKIAGRSSGRVTAECNEAsdkllhmdardspschvs
Low Complexity Region (SEG)
MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPeakellekalMESNEEREKAILNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIINSATELDISPSKPRIsrkswnssegssssfkglsamgsFVKIAGRSSGRVTAECNEASDKLLHMDARDSPSCHVS
Disordered region (IsUnstruct)
**************LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRN******************************************************VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIINSAT***********************************************************************
Disordered Region (DISOPRED)
MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIINSATELDI************************************************ASDKLLHMDARD**S****
Disordered Region (DISEMBL)
***********ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICSVP*****************DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIINSATELDIS*********************KGLSAMGSFVKIAGRSSGRVTAECNEASDKLLHMD**********
Disordered Region (DISPRO)
*********RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVAN*WGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIIN******************************************************EASDKLLHMDARDSP*C***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAxxxxxxxxxxxxxxxxxxxxxETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIINSATELDISPSKPRISRKSWNSSEGSSSSFKGLSAMGSFVKIAGRSSGRVTAECNEASDKLLHMDARDSPSCHVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	460	2.2.26 [Sep-21-2011]
Q94B55	456	Putative E3 ubiquitin-pro	yes	no	0.952	0.960	0.595	1e-153
Q65XV2	450	E3 ubiquitin-protein liga	yes	no	0.952	0.973	0.580	1e-133
Q94CT7	446	Probable E3 ubiquitin-pro	no	no	0.921	0.950	0.504	1e-112
Q4FE45	513	E3 ubiquitin-protein liga	no	no	0.745	0.668	0.298	6e-34
Q7EZ44	495	Probable E3 ubiquitin-pro	no	no	0.75	0.696	0.282	2e-32
Q6KAE5	496	Probable E3 ubiquitin-pro	no	no	0.745	0.691	0.289	9e-32
Q4JHE0	420	Probable E3 ubiquitin-pro	no	no	0.745	0.816	0.312	3e-30
Q337A0	520	Probable E3 ubiquitin-pro	no	no	0.745	0.659	0.280	1e-29
Q6NLQ8	508	E3 ubiquitin-protein liga	no	no	0.756	0.685	0.287	1e-28
Q8BTI7	1076	Serine/threonine-protein	yes	no	0.426	0.182	0.352	2e-22

>sp|Q94B55|XB31_ARATH Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1

 Score =  540 bits (1391), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/460 (59%), Positives = 338/460 (73%), Gaps = 22/460 (4%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MGQ MSC  R E  +F +V+ GD+  I  ++  +P++L  T+ Y + S LH+AAA GQIE
Sbjct: 1   MGQSMSCGSRPEHGIFASVQCGDIITIRRVMATEPSLLNQTTPYDRHSVLHVAAANGQIE 60

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           +LS+LL++F   TN D LNR+KQTPLM+AAM G++SCVKKL E GA IL FDS+  RTCL
Sbjct: 61  ILSLLLERF---TNPDLLNRHKQTPLMLAAMYGRISCVKKLAEVGANILMFDSVNRRTCL 117

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           HYAAYYGH++C+QA+L+AA++SPVA  WG++RFVNIRD+ GATPLHLAARQ   ECV+ L
Sbjct: 118 HYAAYYGHANCVQAILSAAQSSPVAVHWGYARFVNIRDDKGATPLHLAARQRRPECVNVL 177

Query: 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           LD+G+L C+ST   G PGSTPLH AAR GS++C+R+LLAWGADR+Q DA GRIPY +A+K
Sbjct: 178 LDSGSLVCASTSVYGSPGSTPLHLAARSGSIDCVRKLLAWGADRLQRDASGRIPYVVAMK 237

Query: 241 YKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICS 300
           +KH AC ALLNPSSAEPLVWP  L+ +++LN EAK LLE+ALME+N EREK IL  T  S
Sbjct: 238 HKHGACGALLNPSSAEPLVWPSPLKFISELNDEAKLLLEQALMEANREREKTILKGTAYS 297

Query: 301 VPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDII 360
           +P  SPS ++ DDN SE SD ELCCICFE +CTIE+K CGHQMCA CTLALCCH KP+  
Sbjct: 298 LP--SPSFSDTDDNMSEVSDTELCCICFEQVCTIEVKDCGHQMCAQCTLALCCHNKPNPT 355

Query: 361 TAVPEVPACPFCRCSIANLVAARIINSATEL---------------DISPSKPRISRKSW 405
           T+    P CPFCR +IA LV A+  N+  E                D+S SK R  R+S 
Sbjct: 356 TSTVTPPVCPFCRSTIACLVVAQNNNNNNEKSKSLDDVVVVDREAGDVSSSKFRKHRRSI 415

Query: 406 NSSEGSSSSFKGLSAMGSFVKIAGRSSGRVTAECNEASDK 445
           N  E  SSSF GLS +GSF +I GR SGR+ AE NE  DK
Sbjct: 416 NLGE-ESSSFMGLSTIGSFGRITGRGSGRIAAE-NELMDK 453

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q65XV2|XB3_ORYSJ E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica GN=XB3 PE=1 SV=1

 Score =  474 bits (1220), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 266/458 (58%), Positives = 327/458 (71%), Gaps = 20/458 (4%)

Query: 1   MGQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQI 59
           MG  +SC R   E   F A + GDL  + A++ ADP++    + Y + S LH+AAA G+I
Sbjct: 1   MGHGVSCARTGDEHDFFRAAQLGDLDALAALLAADPSLARRATLYDRLSVLHIAAANGRI 60

Query: 60  EVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTC 119
           EVLSM LD+       DA+NR+KQTPLM+AAM+GK+ CV KL+++ A IL FDS+  RTC
Sbjct: 61  EVLSMFLDR---GAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTC 117

Query: 120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHT 179
           LH+AAYYGH DCLQA+L AA+T+PVA++WGF+RFVN+RD+ GATPLHLAARQG   CV  
Sbjct: 118 LHHAAYYGHVDCLQAILAAAQTTPVADSWGFARFVNVRDDHGATPLHLAARQGRPGCVQV 177

Query: 180 LLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL 239
           LL+NGA+  + TG  G+PGST LH AAR G+L+CIR+LLAWGADR+Q D+ GRIPY++AL
Sbjct: 178 LLENGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVAL 237

Query: 240 KYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETIC 299
           K  H ACAALLNP+SAEP+VWP  L+ +++L PEAK LLE ALME+N EREK ILN T  
Sbjct: 238 KRNHGACAALLNPTSAEPMVWPSPLKFISELEPEAKALLEAALMEANREREKKILNGTKY 297

Query: 300 SVPSTSPS-DAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPD 358
           S+PS SP  D+  DD  SE SD ELCCICF+  CTIE++ CGHQMCA CTLALCCH KP+
Sbjct: 298 SLPSPSPGDDSADDDACSEVSDTELCCICFDQACTIEVQDCGHQMCAPCTLALCCHNKPN 357

Query: 359 IITAVPEVPACPFCRCSIANLVAARIINSATELDISPSKP-------RISRKSWNSSEGS 411
             T  P  PACPFCR SI+ LV A+     T     P KP       + SR+S N SEG 
Sbjct: 358 PTTLTPPSPACPFCRGSISRLVVAQ-----TRSACDPDKPSSLQLTRKRSRRSHNLSEG- 411

Query: 412 SSSFKGL-SAMGSFVKIAGRSSGRVTAECNEASDKLLH 448
           SSSFKGL SAMGSF K+ GR S R+    +   DK  H
Sbjct: 412 SSSFKGLPSAMGSFSKL-GRGSSRMADSDSSNLDKPEH 448

E3 ubiquitin-protein ligase required for full accumulation of the LRR receptor kinase XA21 and XA21-mediated disease resistance. Binding to XA21 may stabilize the receptor kinase and maintain its protein level. Autoubiquitinated in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94CT7|XB31_ORYSJ Probable E3 ubiquitin-protein ligase XBOS31 OS=Oryza sativa subsp. japonica GN=XBOS31 PE=2 SV=1

 Score =  404 bits (1038), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/456 (50%), Positives = 300/456 (65%), Gaps = 32/456 (7%)

Query: 1   MGQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQI 59
           MG  +SC R+  E  LF A + GD+  + A++ ADP +    + Y + +ALH+AAA G++
Sbjct: 1   MGHGLSCSRDTDEYDLFRAAQLGDIHALSALLAADPALARRATVYDRFTALHIAAANGRL 60

Query: 60  EVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTC 119
           +VLSMLLD+     + D L+R KQTPLMVAAM G   CV +L+  GA +L FDS + RTC
Sbjct: 61  QVLSMLLDR---DGDVDVLSRKKQTPLMVAAMRGNTECVVRLLRGGANVLTFDSPRARTC 117

Query: 120 LHYAAYYGHSDCLQALLTAARTS--PVANTWGFSRFVNIRDESGATPLHLAARQGWSECV 177
           LH+AAYYGH++CLQA+L AA  +  PVA +WGF+RFVN+RDE GATPLHLAAR   + CV
Sbjct: 118 LHHAAYYGHAECLQAILGAAAQAQGPVAASWGFARFVNVRDERGATPLHLAARHARASCV 177

Query: 178 HTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI 237
             LLD GA+  + T   G+PGST LH AAR GS+ECIRELLAWGADR+Q D+ GRI YA+
Sbjct: 178 RLLLDKGAIVSAPTAVYGFPGSTALHLAARAGSMECIRELLAWGADRLQRDSAGRIAYAV 237

Query: 238 ALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNET 297
           A++  H+ACAALLNP++AEP+VWP  L+ + +L  +AK LLE ALME+N EREK IL+ +
Sbjct: 238 AMRRGHRACAALLNPAAAEPIVWPSPLKFIGELEADAKALLEAALMEANREREKRILHGS 297

Query: 298 ICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKP 357
             ++      +   D+  +       C ICFE  C++E+K CGHQMCA CTLA+CCH KP
Sbjct: 298 DINIKGGDEEEESEDEEEA-------CNICFEQACSMEVKECGHQMCAACTLAICCHSKP 350

Query: 358 DIITAVPEVPACPFCRCSIANLVAARIINSATELDISPSKPRISRKSWNSSEGSSSSFKG 417
           +  T +   PACPFCR +I+ LV A   ++ T              S   S   SSSFKG
Sbjct: 351 NPKTLLLHPPACPFCRTTISRLVVATTNSNKT-------------NSRRRSRSRSSSFKG 397

Query: 418 --LSAMGSFVKIAGRSSGRVTAE---CNEASDKLLH 448
              SAMGSF +I GR SGR+  +     E +DK  H
Sbjct: 398 GLSSAMGSFSRI-GRGSGRLVVDGSSVGELADKPDH 432

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana GN=XBAT33 PE=2 SV=1

 Score =  145 bits (366), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 119/398 (29%), Positives = 172/398 (43%), Gaps = 55/398 (13%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MG    C    E  L  A  +GD    + +++ +P +   ++  G  S LH AAA G  E
Sbjct: 1   MGNSFGCSASGER-LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNE 59

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           ++ +LL+      + ++ N   QT LM A   G    V+ L+     +   D L GRT L
Sbjct: 60  IVGLLLEN---GADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLAGRTAL 116

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTW---------------GFSRFVNIRDESGATPL 165
           H+AA  GH+ C++ +L     S   N+                  S+FVN   + G T L
Sbjct: 117 HFAAVNGHARCIRLVLADFLPSDKLNSLPETGVVTAKNKSEQSALSKFVNKAADGGITAL 176

Query: 166 HLAARQGWSECVHTLLDNGALACSSTGGNGYP------GSTPLHFAARGGSLECIRELLA 219
           H+AA  G  +CV  LLD  A   + T   G        GSTPLH+AA GG+L+C + LLA
Sbjct: 177 HMAALNGLFDCVQLLLDLEANVSAVTFHYGTSMDMIGAGSTPLHYAACGGNLKCCQILLA 236

Query: 220 WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLE 279
            GA ++  +  G +P  IA  +       LL+P+S   +V P          P +  L  
Sbjct: 237 RGARKMTLNCNGWLPIDIARMWSRHWLEPLLSPNS--DVVIPAF--------PHSNYLSL 286

Query: 280 KALMESNEEREKAILNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPC 339
             L   N  RE  + + TI                     +V++C +C E  CT+  + C
Sbjct: 287 PLLSILNIAREFGLQSATI-------------------GDEVDICAVCLERTCTVAAEGC 327

Query: 340 GHQMCAHCTLALCCHKK-PDIITAVPEVPACPFCRCSI 376
            HQ+C  C L LC     P +    P    CP CR  I
Sbjct: 328 EHQLCVRCALYLCSSSNVPSVTVGPPGSIPCPLCRHGI 365

Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7EZ44|XB35_ORYSJ Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica GN=XBOS35 PE=2 SV=1

 Score =  140 bits (353), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 171/407 (42%), Gaps = 62/407 (15%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           +G    C    E  L  A  +GD+Q   A++E +P +   ++   + S LH +AA G  E
Sbjct: 7   VGDSFGCSATGER-LVSAARDGDIQEAMALLELNPRLARYSTFGIRNSPLHYSAAKGHHE 65

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           ++S+L++      + +  N   QT LM A + G    V+ L+   A I   D   G T +
Sbjct: 66  IVSLLIESG---VDINLRNCRGQTALMQACLYGHWKVVQILVLFKANIHKKDCFSGATAI 122

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTW-------------------GFSRFVNIRDESG 161
           H+AA  GH+ CL+ LL A     +   W                      R +N + + G
Sbjct: 123 HFAALKGHTRCLR-LLVADYVPSLPEFWSVMHAKCTDETNKEAFDAVALRRLINNKSDGG 181

Query: 162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP------GSTPLHFAARGGSLECIR 215
            TPLHLAA  G +ECV  LLD GA     T  +G        GSTPLH+AA GGS  C +
Sbjct: 182 VTPLHLAALHGHAECVQLLLDLGASVSEVTINDGSTIDLIGSGSTPLHYAACGGSAVCCQ 241

Query: 216 ELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL-VWPLQLRNMTDLNPEA 274
            L+A GA+    +  G  P  +A  +   +   +L   S  P+ + P    ++  ++   
Sbjct: 242 LLVAAGANMRAQNTNGLTPLMVARSWHKSSVEGILTKRSEVPVRILPSSYLSLPLMS--- 298

Query: 275 KELLEKALMESNEEREKAILNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTI 334
              + K   E    +       ++C  P                     C IC +  CT+
Sbjct: 299 ---IVKIARECGWRKTSV---SSVCHDP---------------------CAICLDTECTV 331

Query: 335 EIKPCGHQMCAHCTLALCCHKKPDI-ITAVPEVPACPFCRCSIANLV 380
             + CGH+ C  C L LC        I  VP    CP CR +I + V
Sbjct: 332 SAEGCGHEFCTKCALYLCATASSSTSIRGVPGSIPCPLCRHTIVSFV 378

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6KAE5|XB32_ORYSJ Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica GN=XBOS32 PE=2 SV=2

 Score =  138 bits (348), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 118/408 (28%), Positives = 173/408 (42%), Gaps = 65/408 (15%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           +G    C    E  L  A  +GDLQ   A++E +P +   ++  G+ S LH AAA G  E
Sbjct: 7   VGNSFGCSASGER-LVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAAQGHHE 65

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           ++S+LL+        +  N   QT LM A   G    V+ L+   A +   D L G + L
Sbjct: 66  IVSLLLES---GVEINLRNYRGQTALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGSAL 122

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTW-------------------GFSRFVNIRDESG 161
           H+AA +GH+ CL+ L+ A     + N W                   G  + VN + + G
Sbjct: 123 HFAALHGHARCLR-LVLADYVPSMPNFWNSMKDSLSEEGPSADLDEDGLFKMVNQKADGG 181

Query: 162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGY------PGSTPLHFAARGGSLECIR 215
            TPLH+AA  G  ECV  LLD GA    +T  +G        GSTPLH+AA GG+  C +
Sbjct: 182 LTPLHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQ 241

Query: 216 ELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAK 275
            L+A GA     +A G  P  +A  +   +   +L   S EP     + R  T  +P   
Sbjct: 242 LLIARGASLSAQNASGWTPLMVARSWHRNSLEEIL---SKEP-----ESRIRTVPSPYLC 293

Query: 276 ELLEKALMESNEEREKAILNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIE 335
             L   +  + E   + +    +C                     ++ C +C E  C++ 
Sbjct: 294 LPLMSIMSIAREFGWRYLNQSPVC---------------------IDPCAVCLEGSCSVA 332

Query: 336 IKPCGHQMCAHCTLALCCHKKPDI--ITAVPEVPACPFCRCSIANLVA 381
            + C H+ C  C L LC      +    A+P    CP CR  I    A
Sbjct: 333 AEGCKHEFCTRCALYLCSTSYTSVSPAGAIP----CPLCRHPIIAFTA 376

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4JHE0|XB36_ORYSJ Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica GN=XBOS36 PE=2 SV=1

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 175/387 (45%), Gaps = 44/387 (11%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MG  + C    E  L  A ++GD    + ++ A+P +   T+     S LH+AAA G  E
Sbjct: 1   MGNSLGCVGLGER-LAAAAKDGDAAEAQRLLAANPGLARCTTFGNLNSPLHVAAAKGHHE 59

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           + ++LL+      + +A N Y QTPLM A   G    V+ L+     +   ++L GRT L
Sbjct: 60  IAALLLENG---ADVNARNIYGQTPLMQACRFGHWEVVQTLLVFRCNVWRVENLSGRTAL 116

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           H AA  GH  C++ L+  A             +VN     G T LHLAA  G  ECVH L
Sbjct: 117 HMAAAGGHVKCVRLLVADAAGD-------RDGYVNKAANGGVTALHLAALHGHVECVHLL 169

Query: 181 LDNGALACSSTGGNGYP-------GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRI 233
           +D  A   + T     P       GSTPLH+AA GG ++C + L++ GADR   +  G +
Sbjct: 170 IDERASLAAQTLPCAAPPMASIGAGSTPLHYAACGGEVKCCQILVSRGADRTAINCNGWL 229

Query: 234 PYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAI 293
           P   A  +       +L+P S  P+    +      L+     L+  A       RE+  
Sbjct: 230 PIDAARIWGCNWLEHVLSPKSHLPIP---KFPPSGYLSQPLPSLIAIA-------REQG- 278

Query: 294 LNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALC- 352
           LN +           +EV D   E +D   C +C E  CT+  + C H++C  C + LC 
Sbjct: 279 LNLS-----------SEVSDGFDEGADA--CAVCLERPCTVAAEGCDHELCVKCAMDLCS 325

Query: 353 CHKKPDIITAVPEVPACPFCRCSIANL 379
             K  D      E+P CP CR  IA+ 
Sbjct: 326 VIKSYDSAGIAGEIP-CPLCRTGIASF 351

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q337A0|XB33_ORYSJ Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica GN=XBOS33 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 179/421 (42%), Gaps = 78/421 (18%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MG  + C    E  L  A  +GD      ++E  P +   ++  G  S LH AAA G ++
Sbjct: 1   MGNSLGCSASGER-LVSAARDGDAVEARMLLELSPALARYSTFGGLNSPLHFAAAKGHLD 59

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           ++++LL++     + +  N   QT LM A  +G    V+ L+     +   D L GRT L
Sbjct: 60  IVTLLLEK---GADVNVRNYCGQTALMHACRHGHWEVVQMLLLFRCNVTRADYLSGRTAL 116

Query: 121 HYAAYYGHSDCLQALL-----------------------TAARTSPVA------NTWGFS 151
           H+AA+ G   C++ LL                       T + +SP +      N     
Sbjct: 117 HFAAHDGLVRCVRLLLADFVPSAPLEDGASSTVDGGECQTNSGSSPCSSLGLKFNESARL 176

Query: 152 RFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP------GSTPLHFA 205
           R++N   + G T LH+AA  G  +C+  L+D GA   + T   G        GSTPLH+A
Sbjct: 177 RYINKPADGGVTALHMAALNGHFDCMQLLIDLGANVSAVTFPYGTTANLIGAGSTPLHYA 236

Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE--PLVWP-- 261
           A GG+ EC + LL+ GA ++  +  G +P  +A  +  +    LL+P+S    P   P  
Sbjct: 237 AGGGNAECCQLLLSKGASKLTLNCNGWLPIDVARMFGRRFLEPLLSPNSNSSIPAYQPSN 296

Query: 262 -LQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICSVPSTSPSDAEVDDNTSEASD 320
            L L  M+ L               N  RE  +L+             A VDD+      
Sbjct: 297 YLALPFMSIL---------------NIAREFGLLHTV-----------ASVDDS------ 324

Query: 321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDI-ITAVPEVPACPFCRCSIANL 379
            +LC +C E  C++  + C H+ C  C L LC      +  T  P    CP CR  I + 
Sbjct: 325 -DLCAVCLERSCSVAAEGCCHEFCIKCALYLCSTSNTRVEFTGPPGSIPCPLCRNGIMSF 383

Query: 380 V 380
            
Sbjct: 384 T 384

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NLQ8|XB32_ARATH E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana GN=XBAT32 PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 166/403 (41%), Gaps = 55/403 (13%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           +G    C    E  L  A  +GDLQ  +A+++ +P +   ++   + S LH +AA G  E
Sbjct: 7   VGNSFGCSASGER-LVSAARDGDLQEAKALLDYNPRLARYSTFGVRNSPLHYSAAQGHHE 65

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           ++S+L++      + +  N   QT LM A  +G    V  LI  GA I   D L G T L
Sbjct: 66  IVSLLVESG---VDINLRNYRGQTALMQACQHGHWEVVLILILFGANIHRSDYLNGGTAL 122

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTW-----------GFS-----RFVNIRDESGATP 164
           H AA  GH  C++ LL+    S V N W           GF        +N   + G TP
Sbjct: 123 HLAALNGHPRCIRILLSEYIPS-VPNCWSLLKNKKTSVAGFDSSVLHEVINRAADGGITP 181

Query: 165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYP------GSTPLHFAARGGSLECIRELL 218
           LH+AA  G  E V  LLD GA     T  +G        GST LH+A+ GG+ +C + L+
Sbjct: 182 LHVAALNGHIETVQLLLDLGASVTQVTVEDGTTIDLIGAGSTALHYASCGGNTQCCQLLI 241

Query: 219 AWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELL 278
           + GA     ++ G  P  +A  +       +LNP++ +P    L L N+          L
Sbjct: 242 SKGACLAAVNSNGWTPMMVARSWHRNWLEEILNPTTEQP---QLHLPNV------PSPFL 292

Query: 279 EKALMESNEEREKAILNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKP 338
              LM      ++    E  C  P   P                 C +C E  CT+    
Sbjct: 293 CLPLMSIVNIAQECGWRENDCLTPCRDP-----------------CAVCLERKCTVAADG 335

Query: 339 CGHQMCAHCTLAL--CCHKKPDIITAVPEVPACPFCRCSIANL 379
           C H+ C +C L L              P    CP CR  I + 
Sbjct: 336 CAHEFCTNCALYLSTTSITSSKTSNVTPGSVPCPLCRNGIVSF 378

E3 ubiquitin-protein ligase that mediates ubiquitination of ACC synthases (ACS). Negatively regulates ethylene biosynthesis probably via ubiquitin-dependent degradation of ACS4 and ACS7 enzymes. Regulates lateral root formation and development by controlling ethylene production which inhibits lateral root formation at high concentration.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8BTI7|ANR52_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Mus musculus GN=Ankrd52 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 103/210 (49%), Gaps = 14/210 (6%)

Query: 9   ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
            +  +ALF+A E G  + +E +     + L +     K + LH AAA G  + L +L+D 
Sbjct: 616 HKGRTALFLATERGSTECVEVLTAHGASAL-IKERKRKWTPLHAAAASGHTDSLHLLIDS 674

Query: 69  FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH 128
                 TD ++ Y QTPLM+A MNG + CV  L+E G+     D L+GRT LH  A  G 
Sbjct: 675 GERADITDVMDAYGQTPLMLAIMNGHVDCVHLLLEKGSTADAAD-LRGRTALHRGAVTGC 733

Query: 129 SDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALAC 188
            DCL ALL                FV  RD  G TP+HLA+  G +  + TLL       
Sbjct: 734 EDCLAALLD------------HDAFVLCRDFKGRTPIHLASACGHTAVLRTLLQAALSTD 781

Query: 189 SSTGGNGYPGSTPLHFAARGGSLECIRELL 218
               G  Y G +P+H+A+  G  +C+  LL
Sbjct: 782 PLDAGVDYSGYSPMHWASYTGHEDCLELLL 811

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	460
225434974	445	PREDICTED: putative E3 ubiquitin-protein	0.956	0.988	0.645	1e-162
365222888	447	Hop-interacting protein THI033 [Solanum	0.967	0.995	0.630	1e-160
449448637	443	PREDICTED: putative E3 ubiquitin-protein	0.956	0.993	0.625	1e-159
365222866	446	Hop-interacting protein THI012 [Solanum	0.967	0.997	0.623	1e-159
356567907	441	PREDICTED: putative E3 ubiquitin-protein	0.939	0.979	0.650	1e-159
147777111	444	hypothetical protein VITISV_034981 [Viti	0.958	0.993	0.633	1e-158
356527429	438	PREDICTED: putative E3 ubiquitin-protein	0.939	0.986	0.644	1e-158
225440340	444	PREDICTED: putative E3 ubiquitin-protein	0.958	0.993	0.630	1e-158
225434976	438	PREDICTED: putative E3 ubiquitin-protein	0.941	0.988	0.632	1e-157
449502558	443	PREDICTED: putative E3 ubiquitin-protein	0.956	0.993	0.625	1e-156

>gi|225434974|ref|XP_002283965.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 isoform 1 [Vitis vinifera]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 290/449 (64%), Positives = 352/449 (78%), Gaps = 9/449 (2%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MGQ +SC    E  LF AV+ GDL+ +E+++  DP++L  T+ Y + SALH+AAA GQIE
Sbjct: 1   MGQGLSCGVSHEHGLFSAVQVGDLESVESLLARDPSLLHQTTVYDRHSALHIAAANGQIE 60

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           +LSM+LD+     + D LNR KQTPLM+AAM+GK+SCV+KL+++GA +L FDS+ GRTCL
Sbjct: 61  ILSMILDRSI---SPDLLNRNKQTPLMLAAMHGKISCVQKLLQAGANVLMFDSMHGRTCL 117

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           HYAAYYGHSDCLQA+L+AA ++PVA++WGF+RFVNIRD  GATPLHLAARQ   +CVH L
Sbjct: 118 HYAAYYGHSDCLQAILSAAHSNPVADSWGFARFVNIRDGRGATPLHLAARQRRPDCVHIL 177

Query: 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           LDNGAL C+STGG G PGSTPLH AARGGSL+CIRELLAWGADR+Q D+ GRIPY +ALK
Sbjct: 178 LDNGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDSSGRIPYVVALK 237

Query: 241 YKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICS 300
           +KH ACAALLNP+SAEPLVWP  L+ +++LN +AK LLE+ALME+N EREK+IL  T  S
Sbjct: 238 HKHGACAALLNPTSAEPLVWPSPLKFISELNQDAKALLEQALMEANREREKSILKGTSYS 297

Query: 301 VPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDII 360
           +PS S SD  VDDN SEAS+ ELCCICF+ +CTIE++ CGHQMCA CTLALCCH KP+  
Sbjct: 298 LPSPSHSDVAVDDNISEASETELCCICFDQVCTIEVQDCGHQMCAQCTLALCCHNKPNPT 357

Query: 361 TAVPEVPACPFCRCSIANLVAARI-INSATEL---DISPSKPRISRKSWNSSEGSSSSFK 416
           TA    P CPFCR  IA L  A+I  N+  +    D+S SK R SRKS N SEG SSSFK
Sbjct: 358 TACLTAPVCPFCRSGIARLAVAKIKTNNEADSDVGDVSSSKLRRSRKSRNLSEG-SSSFK 416

Query: 417 GLSAMGSFVKIAGRSSGRVTAECNEASDK 445
           GLSA+GSF K+ GR SGR+ AE NE  DK
Sbjct: 417 GLSAVGSFSKMGGRGSGRIAAE-NEWIDK 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365222888|gb|AEW69796.1| Hop-interacting protein THI033 [Solanum lycopersicum]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 285/452 (63%), Positives = 350/452 (77%), Gaps = 7/452 (1%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MGQ  SC    E  LF AV+ GDL+ ++A+ E +P+++  ++ Y +QSALH+AAA GQIE
Sbjct: 1   MGQGFSCGTSDEHGLFTAVQCGDLETVKALFERNPSLVHHSTVYDRQSALHIAAANGQIE 60

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           V+SMLLD   +    D LNRYKQTPLM+AAM+GK+SCV+KLIE+GA IL FDSL GRTCL
Sbjct: 61  VVSMLLD---MSVKPDLLNRYKQTPLMLAAMHGKISCVQKLIEAGANILMFDSLNGRTCL 117

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           HYAAYYG+SDCL+ +L AARTS +A++WG++RFVN+ D  GATPLHLAARQ  ++CVH L
Sbjct: 118 HYAAYYGYSDCLKTILFAARTSHIASSWGYARFVNVNDGKGATPLHLAARQRRADCVHIL 177

Query: 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           LDNGALAC+ST G G+PGSTPLH AAR GSL+CIRELLAWGA+R+Q D  GRIPY IAL+
Sbjct: 178 LDNGALACASTDGYGFPGSTPLHLAARAGSLDCIRELLAWGAERLQRDDLGRIPYTIALR 237

Query: 241 YKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICS 300
           YKH ACAALLNPSSAEPLVWP  L+ +++LN EAK LLE ALME+N+EREK IL  T  S
Sbjct: 238 YKHGACAALLNPSSAEPLVWPSPLKFISELNKEAKHLLECALMEANKEREKNILKGTTYS 297

Query: 301 VPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDII 360
            PS + SD E+DDN SE ++ E+CCICF+ +CTI+++ CGHQMCAHC LALCCHKKP+  
Sbjct: 298 PPSPTNSDNEMDDNISEVNETEICCICFDQVCTIQVQDCGHQMCAHCVLALCCHKKPNPT 357

Query: 361 TAVPEVPACPFCRCSIANLVAARI-INSATELDI-SPSKPRISRKSWNSSEGSSSSFKGL 418
           T  P VP CPFCR +I  L   ++  +  T  DI SPSK R SR+S N SEG SSSFKGL
Sbjct: 358 TTSPIVPVCPFCRSNIVQLDVIKLEKDDGTSHDIVSPSKLRKSRRSRNFSEG-SSSFKGL 416

Query: 419 SAMGSFVKIAGRSSGRVTAECNEASDKLLHMD 450
           SA+ SF ++ GR SGR+ AE NE  DK + +D
Sbjct: 417 SAVSSFGRMVGRGSGRIAAE-NEYIDKPIILD 447

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448637|ref|XP_004142072.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like [Cucumis sativus]

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 279/446 (62%), Positives = 345/446 (77%), Gaps = 6/446 (1%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MGQ +SC ER E+ LF AV+NGDL+ +  MVEADP+VL  T+   + SALH+AAAYGQIE
Sbjct: 1   MGQGLSCGERLENGLFRAVQNGDLEFVRTMVEADPSVLEQTTPRSRMSALHIAAAYGQIE 60

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           +LS+LLD+     N D LNR KQTPLM+A MNGK+SCV++LIE+G+ +L FDSL  RTCL
Sbjct: 61  ILSLLLDR---SVNPDVLNRNKQTPLMLATMNGKISCVQRLIEAGSNVLMFDSLNRRTCL 117

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           HYAAYYGHSDCL+A+++AA ++ VA TWGF R+VNIRD  GATPLH+AAR+   +C+  L
Sbjct: 118 HYAAYYGHSDCLEAIISAAHSASVAGTWGFIRYVNIRDGGGATPLHIAARRKQPQCIQIL 177

Query: 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           L NGAL C+ T   GYPGS+PLH AAR GSLEC+RELLAWGA+R+Q D+ GRIPY +A+K
Sbjct: 178 LANGALVCALTCAYGYPGSSPLHLAARSGSLECVRELLAWGAERLQVDSAGRIPYTVAMK 237

Query: 241 YKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICS 300
            K++ACAALLNPS+AEPLVWP +L+ + +LN EAK LLE+AL+E+N EREKAIL E+  +
Sbjct: 238 RKNRACAALLNPSAAEPLVWPSKLKFINELNQEAKALLERALVEANMEREKAILKESSYA 297

Query: 301 VPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDII 360
            PS   SDAE+DD  SE  D+ELCCICFE  CT+E+ PCGHQMCAHCTLALCC+KKP+  
Sbjct: 298 SPSPLQSDAELDDAESEGCDLELCCICFEQACTLEVHPCGHQMCAHCTLALCCYKKPNSS 357

Query: 361 TAVPEVPACPFCRCSIANLVAARI-INSATELDISPSKPRISRKSWNSSEGSSSSFKGLS 419
           T  P  P CPFCR SI  L+ A+I +    E +I+ SK R SRKS N SEG SSSFK LS
Sbjct: 358 TNCPTTPLCPFCRSSITQLLVAKIKVTDNVESEINSSKLRRSRKS-NFSEG-SSSFKSLS 415

Query: 420 AMGSFVKIAGRSSGRVTAECNEASDK 445
           A+GSF KI G S+G+ + EC+E  DK
Sbjct: 416 ALGSFSKIGGHSTGKFSVECDEEVDK 441

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365222866|gb|AEW69785.1| Hop-interacting protein THI012 [Solanum lycopersicum]

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 281/451 (62%), Positives = 348/451 (77%), Gaps = 6/451 (1%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MGQ +SC    E  LF AV+ GDL  ++++++ +P+++  ++ Y +QS LH+AAA GQIE
Sbjct: 1   MGQGLSCGTSDEHGLFSAVQCGDLDTLKSVLDKNPSLIHHSTVYDRQSPLHIAAANGQIE 60

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           +++MLL++     N D LNRYKQTPLM+AAM+GK+SCV+KLIE+GA IL FDSL GRTCL
Sbjct: 61  IVTMLLNKSI---NPDLLNRYKQTPLMLAAMHGKISCVEKLIEAGANILKFDSLNGRTCL 117

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           HYAAYYGH + L+A+L+ ARTS VA +WG++RFVN+RD  GATPLHLAARQ   ECVH L
Sbjct: 118 HYAAYYGHFESLKAILSTARTSHVAASWGYARFVNVRDGKGATPLHLAARQRRPECVHIL 177

Query: 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           LDNGAL C+STGG G+PGSTPLH AARGGSL+CIRELLAWGADR+  D+ GRIPY +AL+
Sbjct: 178 LDNGALVCASTGGYGFPGSTPLHLAARGGSLDCIRELLAWGADRLHRDSTGRIPYTVALR 237

Query: 241 YKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICS 300
           Y H ACAALLNPSSAEPLVWP  L+ ++ LN EAK LLE+ALME+N+EREK IL  T  S
Sbjct: 238 YHHGACAALLNPSSAEPLVWPSPLKFISQLNDEAKALLERALMEANKEREKNILKGTDYS 297

Query: 301 VPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDII 360
            PS S SDA +DDN SE SD E+CCICF+ LCTIE++ CGHQMCAHC LALCCH KP+  
Sbjct: 298 PPSPSQSDAGMDDNMSEVSDTEVCCICFDQLCTIEVQDCGHQMCAHCVLALCCHNKPNPT 357

Query: 361 TAVPEVPACPFCRCSIANLVAARII-NSATELDISPSKPRISRKSWNSSEGSSSSFKGLS 419
           T  P  P CPFCR +I  L A ++  N+ T+ D+  SK R +R+S N SEG SSSFKGLS
Sbjct: 358 TTSPPEPVCPFCRSNIVQLQAIKVTKNNDTDSDLHSSKLRKTRRSRNFSEG-SSSFKGLS 416

Query: 420 AMGSFVKIAGRSSGRVTAECNEASDKLLHMD 450
           A+ SF K+ GR SGR+ A+ NE  DK + +D
Sbjct: 417 AVSSFGKMTGRGSGRIAAD-NEWIDKPITLD 446

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567907|ref|XP_003552156.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like [Glycine max]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 287/441 (65%), Positives = 351/441 (79%), Gaps = 9/441 (2%)

Query: 1   MGQRMSCRERSES--ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQ 58
           MGQ +SC ++ E    LF A+ +G+L+++EAMVE DPTVL  T G  + S LH+AAA G+
Sbjct: 1   MGQTLSCVQQHEDHGVLFPALASGELEVVEAMVEEDPTVLEHTIGCDRLSPLHVAAANGR 60

Query: 59  IEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRT 118
           IEVLSMLLD+ F   N D LNR+KQTPLM+A M+GK  CV+KLI +GA IL FDS++ RT
Sbjct: 61  IEVLSMLLDRSF---NVDVLNRHKQTPLMLAVMHGKTGCVEKLIHAGANILMFDSIRRRT 117

Query: 119 CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVH 178
           CLHYAAYYGH DCL+A+L+AA ++PVA++WGF+RFVNIRD +GATPLHLAAR   SEC+H
Sbjct: 118 CLHYAAYYGHIDCLKAILSAAHSTPVADSWGFARFVNIRDGNGATPLHLAARHRRSECLH 177

Query: 179 TLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238
            LLDNGAL C+STGG GYPGSTPLH AARGGSL+C+R LLAWGADR+Q D+ G+IP+++A
Sbjct: 178 ALLDNGALVCASTGGYGYPGSTPLHMAARGGSLDCVRMLLAWGADRLQLDSSGKIPFSVA 237

Query: 239 LKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETI 298
           LK+KH+ACAALL+PSSA PLVWP  L+ +++LN EAK LLEKAL+E+N EREK IL ET 
Sbjct: 238 LKHKHKACAALLDPSSAAPLVWPSPLKFISELNQEAKALLEKALLEANREREKTILKETD 297

Query: 299 CSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPD 358
              PS   S++E D+  SEASD+ELCCICF+  CTIE++PCGHQMCAHCTLALCCHKKPD
Sbjct: 298 MP-PSPLHSESEDDNIASEASDMELCCICFDQACTIEVRPCGHQMCAHCTLALCCHKKPD 356

Query: 359 IITAVPEVPACPFCRCSIANLVAARIIN-SATELDISPSKPRISRKSWNSSEGSSSSFKG 417
             TA    P CPFCR +I  L+ A+I   S TE++  P KPR SRKS N SEG SSSFK 
Sbjct: 357 PATAGLSGPVCPFCRGTILQLLVAKINKISDTEVESGPMKPRRSRKS-NFSEG-SSSFKS 414

Query: 418 LSAMGSFVKIAGRSSGRVTAE 438
           LSAMGSF +IAGR+SG++T E
Sbjct: 415 LSAMGSFGRIAGRNSGKITDE 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777111|emb|CAN65557.1| hypothetical protein VITISV_034981 [Vitis vinifera]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 283/447 (63%), Positives = 344/447 (76%), Gaps = 6/447 (1%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MGQ +SC E ++     AVE+GD+ ++EAM+E +P++L    G G+  ALHLAAA G+IE
Sbjct: 1   MGQGLSCGEGADYRFLGAVEDGDVDLVEAMLEEEPSLLEQRGGNGRLPALHLAAAKGRIE 60

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           VLS++L +     N D LN  KQTPLM+AAM+GK+ CV+KL+E+GA IL FDS  GRTCL
Sbjct: 61  VLSLILAR---SVNPDVLNGQKQTPLMLAAMHGKIYCVQKLLEAGANILMFDSRHGRTCL 117

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           HYAAYYGHSDCLQA+L+AA ++P+A +WGFSRFVNIRD  GATPLHLAARQ  S+CVH L
Sbjct: 118 HYAAYYGHSDCLQAILSAAHSTPIAVSWGFSRFVNIRDGKGATPLHLAARQRRSDCVHIL 177

Query: 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           L  GAL C+ST G  YPGSTPLH AARGGSL+ IRELLAWGADR+  D+ GRIPY +A+K
Sbjct: 178 LSRGALVCASTSGYCYPGSTPLHLAARGGSLDTIRELLAWGADRLHRDSSGRIPYTVAMK 237

Query: 241 YKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICS 300
           +KH ACAALLNPS+A PLVWP  L+ ++ LNPEAK LLE+AL+E+N+EREKAIL  TI  
Sbjct: 238 HKHGACAALLNPSAAGPLVWPSPLKFISTLNPEAKALLERALIEANKEREKAILKGTIYY 297

Query: 301 VPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDII 360
           +PS   SD  +DD+ SEAS+ ELCCICF+ +CTIE++ CGHQMCAHCTLALCCH KP+  
Sbjct: 298 LPSPLHSDGGLDDDASEASEAELCCICFDQVCTIEVQECGHQMCAHCTLALCCHNKPNPT 357

Query: 361 TAVPEVPA-CPFCRCSIANLVAARI-INSATELDISPSKPRISRKSWNSSEGSSSSFKGL 418
           TA   VP  CPFCR  I  LV A+I  N  TEL+ISP+KPR SR+  N SEG SSSFK L
Sbjct: 358 TACHTVPVCCPFCRSVITRLVVAQIKTNDDTELEISPTKPRKSREGRNFSEG-SSSFKSL 416

Query: 419 SAMGSFVKIAGRSSGRVTAECNEASDK 445
           SAMGSF K+ GR+  +V  EC+E  DK
Sbjct: 417 SAMGSFGKMGGRNPRKVATECSEEVDK 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527429|ref|XP_003532313.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like [Glycine max]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/442 (64%), Positives = 348/442 (78%), Gaps = 10/442 (2%)

Query: 1   MGQRMSC---RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG 57
           MGQR+SC   +      LF A+ +G+L+++EAMVE DPTVL  T+G  + S LH+AAA G
Sbjct: 1   MGQRLSCVQQQHEEHGVLFPALASGELEVVEAMVEEDPTVLEHTTGCDRLSPLHVAAANG 60

Query: 58  QIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGR 117
           +IEVLSMLLD+ F   N D LNR+KQTPLM+A M+GK  CV+KLI +GA IL FDS++ R
Sbjct: 61  RIEVLSMLLDRSF---NVDVLNRHKQTPLMLAVMHGKTGCVEKLIHAGASILMFDSIRRR 117

Query: 118 TCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECV 177
           TCLHYAAYYG+ DCL+ +L+AA ++PVA++WGF+RFVNIRD +GATPLHLAAR  W EC+
Sbjct: 118 TCLHYAAYYGNIDCLKVILSAAHSTPVADSWGFARFVNIRDGNGATPLHLAARHRWPECL 177

Query: 178 HTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI 237
           H LLDNGAL C+STGG GYPGSTPLH AARGGSL+C+R LLAWGADR+Q D+ G+IP+++
Sbjct: 178 HALLDNGALVCASTGGYGYPGSTPLHMAARGGSLDCVRMLLAWGADRLQLDSSGKIPFSV 237

Query: 238 ALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNET 297
           ALK+KH+ACAALL+PSSA PLVWP  L+ +++LN EAK LLEKAL E+N EREK IL ET
Sbjct: 238 ALKHKHKACAALLDPSSAAPLVWPSPLKFISELNQEAKALLEKALQEANREREKTILKET 297

Query: 298 ICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKP 357
               PS   S++E D+  SEASD+ELCCICF+  CTIE++PCGHQMCAHCTLALCCHKK 
Sbjct: 298 DMP-PSPLNSESEDDNIASEASDMELCCICFDQACTIEVRPCGHQMCAHCTLALCCHKKL 356

Query: 358 DIITAVPEVPACPFCRCSIANLVAARIIN-SATELDISPSKPRISRKSWNSSEGSSSSFK 416
           D  T     P CPFCR SI  L+ A+I   S TE++ SP KPR SRKS N SEG SSSFK
Sbjct: 357 DPATTGLSGPVCPFCRGSILQLLVAKINKISDTEVESSPMKPRRSRKS-NFSEG-SSSFK 414

Query: 417 GLSAMGSFVKIAGRSSGRVTAE 438
            LSAMGSF +IAGR+SG++T E
Sbjct: 415 SLSAMGSFGRIAGRNSGKITDE 436

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440340|ref|XP_002264434.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Vitis vinifera] gi|297740385|emb|CBI30567.3| unnamed protein product [Vitis vinifera]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 282/447 (63%), Positives = 344/447 (76%), Gaps = 6/447 (1%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MGQ +SC E ++     AVE+GD+ ++EAM+E +P++L    G G+  ALHLAAA G+IE
Sbjct: 1   MGQGLSCGEGADYRFLGAVEDGDVDLVEAMLEEEPSLLEQRGGNGRLPALHLAAAKGRIE 60

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           VLS++L +     N D LN  KQTPLM+AAM+GK+ CV+KL+E+GA IL FDS  GRTCL
Sbjct: 61  VLSLILAR---SVNPDVLNGQKQTPLMLAAMHGKIYCVQKLLEAGANILMFDSRHGRTCL 117

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           HYAAYYGHSDCLQA+L+AA ++P+A +WGFSRFVNIRD  GATPLHLAARQ  S+CVH L
Sbjct: 118 HYAAYYGHSDCLQAILSAAHSTPIAVSWGFSRFVNIRDGKGATPLHLAARQRRSDCVHIL 177

Query: 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           L  GAL C+ST G  YPGSTPLH AARGGSL+ +RELLAWGADR+  D+ GRIPY +A+K
Sbjct: 178 LSRGALVCASTSGYCYPGSTPLHLAARGGSLDTVRELLAWGADRLHRDSSGRIPYTVAMK 237

Query: 241 YKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICS 300
           +KH ACAALLNPS+A PLVWP  L+ ++ LNPEAK LLE+AL+E+N+EREKAIL  TI  
Sbjct: 238 HKHGACAALLNPSAAGPLVWPSPLKFISTLNPEAKALLERALIEANKEREKAILKGTIYY 297

Query: 301 VPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDII 360
           +PS   SD  +DD+ SEAS+ ELCCICF+ +CTIE++ CGHQMCAHCTLALCCH KP+  
Sbjct: 298 LPSPLHSDGGLDDDASEASEAELCCICFDQVCTIEVQECGHQMCAHCTLALCCHNKPNPT 357

Query: 361 TAVPEVPA-CPFCRCSIANLVAARI-INSATELDISPSKPRISRKSWNSSEGSSSSFKGL 418
           TA   VP  CPFCR  I  LV A+I  N  TEL+ISP+KPR SR+  N SEG SSSFK L
Sbjct: 358 TACHTVPVCCPFCRSVITRLVVAQIKTNDDTELEISPTKPRKSREGRNFSEG-SSSFKSL 416

Query: 419 SAMGSFVKIAGRSSGRVTAECNEASDK 445
           SAMGSF K+ GR+  +V  EC+E  DK
Sbjct: 417 SAMGSFGKMGGRNPRKVATECSEEVDK 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434976|ref|XP_002283974.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 isoform 2 [Vitis vinifera]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 284/449 (63%), Positives = 346/449 (77%), Gaps = 16/449 (3%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MGQ +SC    E  LF AV+ GDL+ +E+++  DP++L  T+ Y + SALH+AAA GQIE
Sbjct: 1   MGQGLSCGVSHEHGLFSAVQVGDLESVESLLARDPSLLHQTTVYDRHSALHIAAANGQIE 60

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           +LSM+LD+     + D LNR KQTPLM+AAM+GK+SCV+KL+++GA +L FDS+ GRTCL
Sbjct: 61  ILSMILDRSI---SPDLLNRNKQTPLMLAAMHGKISCVQKLLQAGANVLMFDSMHGRTCL 117

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           HYAAYYGHSDCLQA+L+AA ++PVA++WGF+RFVNIRD  GATPLHLAARQ   +CVH L
Sbjct: 118 HYAAYYGHSDCLQAILSAAHSNPVADSWGFARFVNIRDGRGATPLHLAARQRRPDCVHIL 177

Query: 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           LDNGAL C+STGG G PGSTPLH AARGGSL+CIRELLAWGADR+Q D+ GRIPY +ALK
Sbjct: 178 LDNGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDSSGRIPYVVALK 237

Query: 241 YKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICS 300
           +KH ACAALLNP+SAEPLVWP  L+ +++LN +AK LLE+ALME+N EREK+IL  T  S
Sbjct: 238 HKHGACAALLNPTSAEPLVWPSPLKFISELNQDAKALLEQALMEANREREKSILKGTSYS 297

Query: 301 VPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDII 360
           +PS S SD         AS+ ELCCICF+ +CTIE++ CGHQMCA CTLALCCH KP+  
Sbjct: 298 LPSPSHSDV-------AASETELCCICFDQVCTIEVQDCGHQMCAQCTLALCCHNKPNPT 350

Query: 361 TAVPEVPACPFCRCSIANLVAARI-INSATEL---DISPSKPRISRKSWNSSEGSSSSFK 416
           TA    P CPFCR  IA L  A+I  N+  +    D+S SK R SRKS N SEG SSSFK
Sbjct: 351 TACLTAPVCPFCRSGIARLAVAKIKTNNEADSDVGDVSSSKLRRSRKSRNLSEG-SSSFK 409

Query: 417 GLSAMGSFVKIAGRSSGRVTAECNEASDK 445
           GLSA+GSF K+ GR SGR+ AE NE  DK
Sbjct: 410 GLSAVGSFSKMGGRGSGRIAAE-NEWIDK 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502558|ref|XP_004161676.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like [Cucumis sativus]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/446 (62%), Positives = 345/446 (77%), Gaps = 6/446 (1%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
           MGQ +SC ER E+ LF AV+NGDL+ +  MVEADP+VL  T+   + SALH+AAAYGQIE
Sbjct: 1   MGQGLSCGERLENGLFRAVQNGDLEFVRTMVEADPSVLEQTTPRSRMSALHIAAAYGQIE 60

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           +LS+LLD+     N D LNR KQTPLM+A MNGK+SCV++LIE+G+ +L FDSL  RTCL
Sbjct: 61  ILSLLLDR---SVNPDVLNRNKQTPLMLATMNGKISCVQRLIEAGSNVLMFDSLNRRTCL 117

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           HYAAYYGHSDCL+A+++AA ++ VA TWGF R+VNIRD  GATPLH+AAR+   +C+  L
Sbjct: 118 HYAAYYGHSDCLEAIISAAHSASVAATWGFIRYVNIRDGGGATPLHIAARRKQPQCIQIL 177

Query: 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           L NGAL C+ T   GYPGS+PLH AAR GSLEC+RELLAWGA+R+Q D+ GRIPY +A+K
Sbjct: 178 LANGALVCALTCAYGYPGSSPLHLAARSGSLECVRELLAWGAERLQVDSAGRIPYTVAMK 237

Query: 241 YKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICS 300
            K++ACAALLNPS+AEPLVWP +L+ + +LN EAK LLE+AL+E+N EREKAIL E+  +
Sbjct: 238 RKNRACAALLNPSAAEPLVWPSKLKFINELNQEAKALLERALVEANMEREKAILKESSYA 297

Query: 301 VPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDII 360
            PS   SDAE+DD  SE  D+ELCCICFE  CT+E+ PCGHQMCAHCTLALCC+KKP+  
Sbjct: 298 SPSPLQSDAELDDAESEGCDLELCCICFEQACTLEVHPCGHQMCAHCTLALCCYKKPNSS 357

Query: 361 TAVPEVPACPFCRCSIANLVAARI-INSATELDISPSKPRISRKSWNSSEGSSSSFKGLS 419
           T  P  P CPFCR SI  L+ A+I +    E +I+ SK R SRKS N SEG SSSFK LS
Sbjct: 358 TNCPTTPLCPFCRSSITQLLVAKIKVTDNVESEINSSKLRRSRKS-NFSEG-SSSFKSLS 415

Query: 420 AMGSFVKIAGRSSGRVTAECNEASDK 445
           A+GSF KI G S+G+ + EC+E  DK
Sbjct: 416 ALGSFSKIGGHSTGKFSVECDEEVDK 441

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	460
TAIR|locus:2053205	456	XBAT31 "XB3 ortholog 1 in Arab	0.952	0.960	0.55	2.8e-128
UNIPROTKB|Q65XV2	450	XB3 "E3 ubiquitin-protein liga	0.85	0.868	0.580	9.5e-121
TAIR|locus:2182860	513	XBAT33 "XB3 ortholog 3 in Arab	0.386	0.346	0.304	9.9e-22
MGI|MGI:2444029	1076	Ankrd52 "ankyrin repeat domain	0.423	0.181	0.354	1e-20
TAIR|locus:2172600	508	XBAT32 "AT5G57740" [Arabidopsi	0.406	0.368	0.350	5.5e-20
UNIPROTKB|O15084	1053	ANKRD28 "Serine/threonine-prot	0.463	0.202	0.334	3.4e-18
MGI|MGI:2145661	1053	Ankrd28 "ankyrin repeat domain	0.463	0.202	0.333	5.8e-18
DICTYBASE|DDB_G0287459	986	secG "Arf guanyl-nucleotide ex	0.436	0.203	0.32	4.3e-16
FB|FBgn0039590	2119	CG10011 [Drosophila melanogast	0.463	0.100	0.310	6.9e-16
ZFIN|ZDB-GENE-050522-247	1071	ankrd52a "ankyrin repeat domai	0.480	0.206	0.308	1.4e-15

TAIR|locus:2053205 XBAT31 "XB3 ortholog 1 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
 Identities = 253/460 (55%), Positives = 314/460 (68%)

Query:     1 MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
             MGQ MSC  R E  +F +V+ GD+  I  ++  +P++L  T+ Y + S LH+AAA GQIE
Sbjct:     1 MGQSMSCGSRPEHGIFASVQCGDIITIRRVMATEPSLLNQTTPYDRHSVLHVAAANGQIE 60

Query:    61 VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
             +LS+LL++F   TN D LNR+KQTPLM+AAM G++SCVKKL E GA IL FDS+  RTCL
Sbjct:    61 ILSLLLERF---TNPDLLNRHKQTPLMLAAMYGRISCVKKLAEVGANILMFDSVNRRTCL 117

Query:   121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
             HYAAYYGH++C+QA+L+AA++SPVA  WG++RFVNIRD+ GATPLHLAARQ   ECV+ L
Sbjct:   118 HYAAYYGHANCVQAILSAAQSSPVAVHWGYARFVNIRDDKGATPLHLAARQRRPECVNVL 177

Query:   181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
             LD+G+L C+ST   G PGSTPLH AAR GS++C+R+LLAWGADR+Q DA GRIPY +A+K
Sbjct:   178 LDSGSLVCASTSVYGSPGSTPLHLAARSGSIDCVRKLLAWGADRLQRDASGRIPYVVAMK 237

Query:   241 YKHQACAALLNPSSAEPLVWPLQLRNMTDLNPXXXXXXXXXXMESNEEREKAILNETICS 300
             +KH AC ALLNPSSAEPLVWP  L+ +++LN           ME+N EREK IL  T  S
Sbjct:   238 HKHGACGALLNPSSAEPLVWPSPLKFISELNDEAKLLLEQALMEANREREKTILKGTAYS 297

Query:   301 VPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDII 360
             +PS  PS ++ DDN SE SD ELCCICFE +CTIE+K CGHQMCA CTLALCCH KP+  
Sbjct:   298 LPS--PSFSDTDDNMSEVSDTELCCICFEQVCTIEVKDCGHQMCAQCTLALCCHNKPNPT 355

Query:   361 TAVPEVPACPFCRCSIANLVAARIINSATEL---------------DISPSKPRIXXXXX 405
             T+    P CPFCR +IA LV A+  N+  E                D+S SK R      
Sbjct:   356 TSTVTPPVCPFCRSTIACLVVAQNNNNNNEKSKSLDDVVVVDREAGDVSSSKFR-KHRRS 414

Query:   406 XXXXXXXXXXXXXXXXXXFVKIAGRSSGRVTAECNEASDK 445
                               F +I GR SGR+ AE NE  DK
Sbjct:   415 INLGEESSSFMGLSTIGSFGRITGRGSGRIAAE-NELMDK 453

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051049 "regulation of transport" evidence=RCA

UNIPROTKB|Q65XV2 XB3 "E3 ubiquitin-protein ligase XB3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
 Identities = 231/398 (58%), Positives = 288/398 (72%)

Query:     1 MGQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQI 59
             MG  +SC R   E   F A + GDL  + A++ ADP++    + Y + S LH+AAA G+I
Sbjct:     1 MGHGVSCARTGDEHDFFRAAQLGDLDALAALLAADPSLARRATLYDRLSVLHIAAANGRI 60

Query:    60 EVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTC 119
             EVLSM LD+       DA+NR+KQTPLM+AAM+GK+ CV KL+++ A IL FDS+  RTC
Sbjct:    61 EVLSMFLDRG---APPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTC 117

Query:   120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHT 179
             LH+AAYYGH DCLQA+L AA+T+PVA++WGF+RFVN+RD+ GATPLHLAARQG   CV  
Sbjct:   118 LHHAAYYGHVDCLQAILAAAQTTPVADSWGFARFVNVRDDHGATPLHLAARQGRPGCVQV 177

Query:   180 LLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL 239
             LL+NGA+  + TG  G+PGST LH AAR G+L+CIR+LLAWGADR+Q D+ GRIPY++AL
Sbjct:   178 LLENGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVAL 237

Query:   240 KYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPXXXXXXXXXXMESNEEREKAILNETIC 299
             K  H ACAALLNP+SAEP+VWP  L+ +++L P          ME+N EREK ILN T  
Sbjct:   238 KRNHGACAALLNPTSAEPMVWPSPLKFISELEPEAKALLEAALMEANREREKKILNGTKY 297

Query:   300 SVPSTSPSDAEVDDNT-SEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPD 358
             S+PS SP D   DD+  SE SD ELCCICF+  CTIE++ CGHQMCA CTLALCCH KP+
Sbjct:   298 SLPSPSPGDDSADDDACSEVSDTELCCICFDQACTIEVQDCGHQMCAPCTLALCCHNKPN 357

Query:   359 IITAVPEVPACPFCRCSIANLVAARIINSATELDISPS 396
               T  P  PACPFCR SI+ LV A+   SA + D  PS
Sbjct:   358 PTTLTPPSPACPFCRGSISRLVVAQT-RSACDPD-KPS 393

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0016301 "kinase activity" evidence=IDA

TAIR|locus:2182860 XBAT33 "XB3 ortholog 3 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
 Identities = 60/197 (30%), Positives = 89/197 (45%)

Query:     1 MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
             MG    C    E  L  A  +GD    + +++ +P +   ++  G  S LH AAA G  E
Sbjct:     1 MGNSFGCSASGER-LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNE 59

Query:    61 VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
             ++ +LL+      + ++ N   QT LM A   G    V+ L+     +   D L GRT L
Sbjct:    60 IVGLLLENG---ADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLAGRTAL 116

Query:   121 HYAAYYGHSDCLQALLTAARTSPVANTW---------------GFSRFVNIRDESGATPL 165
             H+AA  GH+ C++ +L     S   N+                  S+FVN   + G T L
Sbjct:   117 HFAAVNGHARCIRLVLADFLPSDKLNSLPETGVVTAKNKSEQSALSKFVNKAADGGITAL 176

Query:   166 HLAARQGWSECVHTLLD 182
             H+AA  G  +CV  LLD
Sbjct:   177 HMAALNGLFDCVQLLLD 193

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

MGI|MGI:2444029 Ankrd52 "ankyrin repeat domain 52" [Mus musculus (taxid:10090)]

 Score = 273 (101.2 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 74/209 (35%), Positives = 103/209 (49%)

Query:    10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
             +  +ALF+A E G  + +E +     + L +     K + LH AAA G  + L +L+D  
Sbjct:   617 KGRTALFLATERGSTECVEVLTAHGASAL-IKERKRKWTPLHAAAASGHTDSLHLLIDSG 675

Query:    70 FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
                  TD ++ Y QTPLM+A MNG + CV  L+E G+     D L+GRT LH  A  G  
Sbjct:   676 ERADITDVMDAYGQTPLMLAIMNGHVDCVHLLLEKGSTADAAD-LRGRTALHRGAVTGCE 734

Query:   130 DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACS 189
             DCL ALL                FV  RD  G TP+HLA+  G +  + TLL        
Sbjct:   735 DCLAALLD------------HDAFVLCRDFKGRTPIHLASACGHTAVLRTLLQAALSTDP 782

Query:   190 STGGNGYPGSTPLHFAARGGSLECIRELL 218
                G  Y G +P+H+A+  G  +C+  LL
Sbjct:   783 LDAGVDYSGYSPMHWASYTGHEDCLELLL 811

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172600 XBAT32 "AT5G57740" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
 Identities = 75/214 (35%), Positives = 100/214 (46%)

Query:     1 MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYG-KQSALHLAAAYGQI 59
             +G    C    E  L  A  +GDLQ  +A+++ +P  L   S +G + S LH +AA G  
Sbjct:     7 VGNSFGCSASGER-LVSAARDGDLQEAKALLDYNPR-LARYSTFGVRNSPLHYSAAQGHH 64

Query:    60 EVLSMLLDQFFLYTNTDA-LNRYK-QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGR 117
             E++S+L++     +  D  L  Y+ QT LM A  +G    V  LI  GA I   D L G 
Sbjct:    65 EIVSLLVE-----SGVDINLRNYRGQTALMQACQHGHWEVVLILILFGANIHRSDYLNGG 119

Query:   118 TCLHYAAYYGHSDCLQALLTAARTSPVANTW-----------GFS-----RFVNIRDESG 161
             T LH AA  GH  C++ LL+    S V N W           GF        +N   + G
Sbjct:   120 TALHLAALNGHPRCIRILLSEYIPS-VPNCWSLLKNKKTSVAGFDSSVLHEVINRAADGG 178

Query:   162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNG 195
              TPLH+AA  G  E V  LLD GA     T  +G
Sbjct:   179 ITPLHVAALNGHIETVQLLLDLGASVTQVTVEDG 212

GO:0008270 "zinc ion binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010311 "lateral root formation" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010366 "negative regulation of ethylene biosynthetic process" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

UNIPROTKB|O15084 ANKRD28 "Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A" [Homo sapiens (taxid:9606)]

 Score = 251 (93.4 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 77/230 (33%), Positives = 112/230 (48%)

Query:    27 IEAMVEADPT-VLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTP 85
             ++ ++E   T +L  +      S LHLAA +G  + L +L+       + D  N   +TP
Sbjct:   530 LDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLL---DLDVRNSSGRTP 586

Query:    86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
             L +AA  G + CV  LI  GA IL  D +  RT +H AA  GHS+CL+ L+  A      
Sbjct:   587 LDLAAFKGHVECVDVLINQGASILVKDYILKRTPIHAAATNGHSECLRLLIGNAEPQ--- 643

Query:   146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
             N       V+I+D +G TPL L+   G ++CV++LL+ GA    +       G T LH  
Sbjct:   644 NA------VDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGA----NVDAKDKWGRTALHRG 693

Query:   206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255
             A  G  EC+  LL  GA  +  D+ GR P  ++    H      L  S+A
Sbjct:   694 AVTGHEECVDALLQHGAKCLLRDSRGRTPIHLSAACGHIGVLGALLQSAA 743

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:2145661 Ankrd28 "ankyrin repeat domain 28" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 77/231 (33%), Positives = 114/231 (49%)

Query:    27 IEAMVEADPT-VLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTP 85
             ++ ++E   T +L  +      S LHLAA +G  + L +L+       + D  N   +TP
Sbjct:   530 LDVLMETSGTDMLSDSDNRATISPLHLAAYHGHHQALEVLVQSLL---DLDVRNSSGRTP 586

Query:    86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
             L +AA  G + CV  LI  GA IL  D +  RT +H AA  GHS+CL+ L+  A      
Sbjct:   587 LDLAAFKGHVECVDVLINQGASILVKDYVLKRTPIHAAATNGHSECLRLLIGNAEPQ--- 643

Query:   146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
             N       V+I+D +G TPL L+   G ++CV++LL+ GA    +       G T LH  
Sbjct:   644 NA------VDIQDGNGQTPLMLSVLNGHTDCVYSLLNKGA----NVDAKDKWGRTALHRG 693

Query:   206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH-QACAALLNPSSA 255
             A  G  EC+  LL  GA  +  D+ GR P  ++    H     ALL  +++
Sbjct:   694 AVTGHEECVDALLQHGAKCLLRDSRGRTPIHLSAACGHIGVLGALLQSATS 744

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0287459 secG "Arf guanyl-nucleotide exchange factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 232 (86.7 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 72/225 (32%), Positives = 110/225 (48%)

Query:    46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESG 105
             + ++LHLAA  G ++++ +L+ ++    N    +    TPL  A+ NG  SC K L++ G
Sbjct:   335 QSTSLHLAAFNGLLDMVDLLI-RYKAQINIK--DEEGATPLHKASFNGHSSCAKLLVDKG 391

Query:   106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL 165
             A I   DS QG T LH AA+ G S CL  L+ +               + ++D  G TPL
Sbjct:   392 APICIVDS-QGATPLHKAAFNGRSKCLATLIRSGAE------------LEVKDSQGGTPL 438

Query:   166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV 225
             H AA  G S+C   LL  GA    +        STPLH A+  G+ + +  L+ + A R+
Sbjct:   439 HNAAYNGHSDCCRILLKKGA----NVNAVDTHSSTPLHLASAAGARDTVDVLIQFKA-RI 493

Query:   226 QPDAF-GRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTD 269
                 F G+ P   A+K  H   A +L  + A+  +  + LR+  D
Sbjct:   494 DAKNFAGKTPLVYAIKKNHSDVARVLIRAGAD--LDQVSLRSSVD 536

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

FB|FBgn0039590 CG10011 [Drosophila melanogaster (taxid:7227)]

 Score = 234 (87.4 bits), Expect = 6.9e-16, P = 6.9e-16
 Identities = 73/235 (31%), Positives = 116/235 (49%)

Query:     7 CRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
             C    ++AL +A + G L  ++A+++   + +   +  GK +A  LA   G ++ +  LL
Sbjct:  1580 CDNEGKTALHLAAQEGRLHCVQALLDIHSSFVDQKAHDGK-TAFRLACLEGHMDTVEFLL 1638

Query:    67 DQFFLYTNT-DALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
              +F    N+ DA +R   T L + A+  KL  VK L++     +N    +GRT LH AA+
Sbjct:  1639 -KFCCDVNSKDADSR---TTLYILALENKLEIVKYLLDMTNVDVNIPDSEGRTALHVAAW 1694

Query:   126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
              GH+D ++ L+ A               VN  D    TPLH  A QG  + ++ LL  GA
Sbjct:  1695 QGHADMVKTLIEAGAD------------VNSMDLEARTPLHSCAWQGNHDVMNILLYYGA 1742

Query:   186 LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
             LA  +       G+T L  +A+ G  +C+  LL +GA+  + D  GR P  +A K
Sbjct:  1743 LADHACK----QGATALGISAQEGHEKCVIALLQFGANPYKSDHCGRTPIKLAAK 1793

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050522-247 ankrd52a "ankyrin repeat domain 52a" [Danio rerio (taxid:7955)]

 Score = 228 (85.3 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 73/237 (30%), Positives = 105/237 (44%)

Query:     7 CRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
             C  +  SA+  A  +G+ Q +E ++E     LG     G  S LHLA   G  E +++L+
Sbjct:   540 CNTKGYSAVHYAAAHGNKQNLELLLEMCFNTLGDKESNGSISPLHLAVESGHWECVTVLI 599

Query:    67 DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
             +        D + R   + L +A+  G   CV+ L+   A  L  +       LH AA  
Sbjct:   600 ESGVCVDVCDPVGR---SVLYLASQRGHSRCVELLLSQSASCLLAEHRSKWGPLHVAAAN 656

Query:   127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
             GHS+CL+ LL +          G +  VN+ D  G TPL LA   G ++CVH LL+ GA 
Sbjct:   657 GHSECLRMLLCSE---------GGADLVNVTDAEGQTPLMLAVLGGHTDCVHLLLERGA- 706

Query:   187 ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH 243
              C         G T LH  A  G  +C+  LL+     +  D  GR    +A    H
Sbjct:   707 -CPDMKDRR--GRTALHRGAVMGREDCLTALLSHNVSVLSRDFQGRSALHLAASCGH 760

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q65XV2	XB3_ORYSJ	6, ., 3, ., 2, ., -	0.5807	0.9521	0.9733	yes	no
Q94B55	XB31_ARATH	6, ., 3, ., 2, ., -	0.5956	0.9521	0.9605	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024344001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (445 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	460
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-29
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-25
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-11
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-10
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-09
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-08
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	6e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-04
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-04
COG5236	493	COG5236, COG5236, Uncharacterized conserved protei	4e-04
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	4e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	6e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	0.002
smart00248	30	smart00248, ANK, ankyrin repeats	0.003
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.004
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  118 bits (297), Expect = 5e-32
 Identities = 59/143 (41%), Positives = 78/143 (54%), Gaps = 17/143 (11%)

Query: 76  DALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
           +A +   +TPL +AA NG L  VK L+E+GA +   D+  GRT LH AA  GH + ++ L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNGHLEIVKLL 59

Query: 136 LTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNG 195
           L        A+       VN RD+ G TPLHLAAR G  + V  LL +GA   +      
Sbjct: 60  LEKG-----AD-------VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD---- 103

Query: 196 YPGSTPLHFAARGGSLECIRELL 218
             G TPLH AA+ G LE ++ LL
Sbjct: 104 KDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  111 bits (280), Expect = 1e-29
 Identities = 54/135 (40%), Positives = 74/135 (54%), Gaps = 16/135 (11%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           ++ LHLAA+ G +EV+ +LL+      + +A +   +TPL +AA NG L  VK L+E GA
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENG---ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
            + N     G T LH AA  G+ D ++ LL        A+       VN RD+ G TPLH
Sbjct: 65  DV-NARDKDGNTPLHLAARNGNLDVVKLLLKHG-----AD-------VNARDKDGRTPLH 111

Query: 167 LAARQGWSECVHTLL 181
           LAA+ G  E V  LL
Sbjct: 112 LAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  104 bits (262), Expect = 4e-27
 Identities = 54/135 (40%), Positives = 68/135 (50%), Gaps = 16/135 (11%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
           GRT LH AA  GH + ++ LL        A+       VN +D  G TPLHLAA+ G  E
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENG-----AD-------VNAKDNDGRTPLHLAAKNGHLE 54

Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
            V  LL+ GA   +        G+TPLH AAR G+L+ ++ LL  GAD    D  GR P 
Sbjct: 55  IVKLLLEKGADVNA----RDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPL 110

Query: 236 AIALKYKHQACAALL 250
            +A K  H     LL
Sbjct: 111 HLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 98.6 bits (246), Expect = 8e-25
 Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 6/125 (4%)

Query: 12  ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
            + L +A  NG L++++ ++E    V         ++ LHLAA  G +E++ +LL++   
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVNAKD--NDGRTPLHLAAKNGHLEIVKLLLEKG-- 63

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC 131
             + +A ++   TPL +AA NG L  VK L++ GA +   D   GRT LH AA  GH + 
Sbjct: 64  -ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDK-DGRTPLHLAAKNGHLEV 121

Query: 132 LQALL 136
           ++ LL
Sbjct: 122 VKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 15/100 (15%)

Query: 86  LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
           L +AA NG L  VK L+E GA   + +     T LH AA  G+ + ++ LL         
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA---DVNLGDTDTALHLAARNGNLEIVKLLLEH------- 50

Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
              G    VN +D+ G T LHLAAR G  E V  LL++GA
Sbjct: 51  ---GAD--VNAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 41/96 (42%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
           N RDE G TPLHLAA  G  E V  LL+NGA   +        G TPLH AA+ G LE +
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKD----NDGRTPLHLAAKNGHLEIV 56

Query: 215 RELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           + LL  GAD    D  G  P  +A +  +     LL
Sbjct: 57  KLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 36/104 (34%), Positives = 50/104 (48%), Gaps = 18/104 (17%)

Query: 120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHT 179
           LH AA  G+ + ++ LL               +  ++      T LHLAAR G  E V  
Sbjct: 1   LHLAAKNGNLELVKLLL--------------EKGADVNLGDTDTALHLAARNGNLEIVKL 46

Query: 180 LLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
           LL++GA   +        G+T LH AAR G+LE ++ LL  GAD
Sbjct: 47  LLEHGADVNAKDKD----GNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.9 bits (177), Expect = 9e-16
 Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 7/98 (7%)

Query: 15  LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN 74
           L +A +NG+L++++ ++E    V          +ALHLAA  G +E++ +LL+      +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD----TDTALHLAARNGNLEIVKLLLEHGA---D 53

Query: 75  TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
            +A ++   T L +AA NG L  VK L+E GA I   D
Sbjct: 54  VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 69.1 bits (168), Expect = 3e-13
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 22/140 (15%)

Query: 50  LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLS-----CVKKLIES 104
           LH AA+ G  +++ +LL       + +A +    TPL +AA+NG          K L+E+
Sbjct: 77  LHSAASKGDDKIVKLLLASGA---DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 105 GAFILNFD--SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA 162
           GA +   +     G T LH+AA  G +D ++ LL        A+        N R+  G 
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVELLL-----EAGAD-------PNSRNSYGV 181

Query: 163 TPLHLAARQGWSECVHTLLD 182
           T L  AA+ G  E V  LLD
Sbjct: 182 TALDPAAKNGRIELVKLLLD 201

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.8 bits (156), Expect = 6e-13
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 165 LHLAARQGWSECVHTLLDNGA-LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
           LHLAA+ G  E V  LL+ GA +    T        T LH AAR G+LE ++ LL  GAD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD-------TALHLAARNGNLEIVKLLLEHGAD 53

Query: 224 RVQPDAFGRIPYAIALKYKHQACAALL 250
               D  G     +A +  +     LL
Sbjct: 54  VNAKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.9 bits (165), Expect = 6e-13
 Identities = 55/210 (26%), Positives = 75/210 (35%), Gaps = 21/210 (10%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCV---KKLIESG 105
               A        L +LL    L  + D  N   +   +   +    +       L    
Sbjct: 3   PSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIV 62

Query: 106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL 165
              L    L GR  LH AA  G    ++ LL +          G    VN +D  G TPL
Sbjct: 63  DRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS----------GAD--VNAKDADGDTPL 110

Query: 166 HLAARQG-----WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW 220
           HLAA  G       E    LL+ GA    +   +   G+TPLH+AA  G  + +  LL  
Sbjct: 111 HLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD-EDGNTPLHWAALNGDADIVELLLEA 169

Query: 221 GADRVQPDAFGRIPYAIALKYKHQACAALL 250
           GAD    +++G      A K        LL
Sbjct: 170 GADPNSRNSYGVTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 64.5 bits (156), Expect = 8e-12
 Identities = 58/176 (32%), Positives = 72/176 (40%), Gaps = 23/176 (13%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
            L L  A    E+L  L+    L             PL  AA  G    VK L+ SGA +
Sbjct: 44  ELALLPAASLSELLLKLIVDRHLAARDLDGR----LPLHSAASKGDDKIVKLLLASGADV 99

Query: 109 LNFDSLQGRTCLHYAAYYGHS-----DCLQALLTAARTSPVANTWGFSRFVNIRDESGAT 163
            N     G T LH AA  G+      +  + LL A     V N          RDE G T
Sbjct: 100 -NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL---------RDEDGNT 149

Query: 164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219
           PLH AA  G ++ V  LL+ GA        N Y G T L  AA+ G +E ++ LL 
Sbjct: 150 PLHWAALNGDADIVELLLEAGA---DPNSRNSY-GVTALDPAAKNGRIELVKLLLD 201

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 63.8 bits (155), Expect = 6e-11
 Identities = 64/256 (25%), Positives = 102/256 (39%), Gaps = 46/256 (17%)

Query: 50  LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
           LH A   G +E + ML  ++    N +  N     P+ +A  +     +K L+E GA+  
Sbjct: 128 LHYAIKKGDLESIKMLF-EYGADVNIEDDN--GCYPIHIAIKHNFFDIIKLLLEKGAY-A 183

Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
           N     G + LH AA YG   C++ L+     + + N          + ++G TPLH A 
Sbjct: 184 NVKDNNGESPLHNAAEYGDYACIKLLID--HGNHIMN----------KCKNGFTPLHNAI 231

Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAAR-GGSLECIRELLAWGADRVQPD 228
               S  +  L++N ++  +    +G    TPLH A      ++ I  LL   AD    D
Sbjct: 232 IHNRS-AIELLINNASI--NDQDIDGS---TPLHHAINPPCDIDIIDILLYHKADISIKD 285

Query: 229 AFGRIPYAIALKYKHQ--------ACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEK 280
             G  P   A KY ++        A A L+  +         +L++   L     E+ + 
Sbjct: 286 NKGENPIDTAFKYINKDPVIKDIIANAVLIKEAD--------KLKDSDFLE--HIEIKDN 335

Query: 281 ALM-----ESNEEREK 291
                   E NEE E 
Sbjct: 336 KEFSDFIKECNEEIED 351

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 56.9 bits (138), Expect = 7e-11
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALL 136
           T L  AA++G+L  VK L+E G  I   D   G T LH AA  G+ + L+ LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDE-DGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 17/157 (10%)

Query: 98  VKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR 157
           +K +++ G  + N    + +T LHYA   G  + ++ L              +   VNI 
Sbjct: 107 IKTILDCGIDV-NIKDAELKTFLHYAIKKGDLESIKMLFE------------YGADVNIE 153

Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
           D++G  P+H+A +  + + +  LL+ GA A          G +PLH AA  G   CI+ L
Sbjct: 154 DDNGCYPIHIAIKHNFFDIIKLLLEKGAYA----NVKDNNGESPLHNAAEYGDYACIKLL 209

Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254
           +  G   +     G  P   A+ +   A   L+N +S
Sbjct: 210 IDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNAS 246

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 26/188 (13%)

Query: 2   GQRMSCRER-SESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQ 58
           G  ++ ++   ++ L  A++ GDL+ I+ + E  AD  +      Y     +H+A  +  
Sbjct: 114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY----PIHIAIKHNF 169

Query: 59  IEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRT 118
            +++ +LL++   Y N    +   ++PL  AA  G  +C+K LI+ G  I+N     G T
Sbjct: 170 FDIIKLLLEKG-AYANVK--DNNGESPLHNAAEYGDYACIKLLIDHGNHIMN-KCKNGFT 225

Query: 119 CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS-ECV 177
            LH A  +  S     LL    +            +N +D  G+TPLH A       + +
Sbjct: 226 PLHNAIIHNRS--AIELLINNAS------------INDQDIDGSTPLHHAINPPCDIDII 271

Query: 178 HTLLDNGA 185
             LL + A
Sbjct: 272 DILLYHKA 279

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.4 bits (135), Expect = 5e-09
 Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 11/171 (6%)

Query: 6   SCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQ-----IE 60
           +        L  A   GD ++++ ++ +   V    +     + LHLAA  G      IE
Sbjct: 68  ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDAD--GDTPLHLAALNGNPPEGNIE 125

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
           V  +LL+        +  +    TPL  AA+NG    V+ L+E+GA   + +S  G T L
Sbjct: 126 VAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNS-YGVTAL 184

Query: 121 HYAAYYGHSDCLQALLTA--ARTSPVANTWGFSRF-VNIRDESGATPLHLA 168
             AA  G  + ++ LL      +    N  G +   V+ R+    T L +A
Sbjct: 185 DPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 62/280 (22%), Positives = 106/280 (37%), Gaps = 36/280 (12%)

Query: 58  QIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGR 117
             E+  + +         +  +    + L+  A  G  + +++L+++       DS +GR
Sbjct: 501 HKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDS-KGR 559

Query: 118 TCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECV 177
           T LH AA  G+ DC+  LL  A              V+IRD +G T L  A      +  
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACN------------VHIRDANGNTALWNAISAKHHKIF 607

Query: 178 HTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI 237
             L    +++     G+       L  AA+   L  ++ELL  G +    D  G     +
Sbjct: 608 RILYHFASISDPHAAGD------LLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQV 661

Query: 238 ALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNP-EAKELLEKALMESNEEREKAILNE 296
           A+   H     LL  + A+  V      +  D +P E +ELL+K        RE   L  
Sbjct: 662 AMAEDHVDMVRLLIMNGAD--VDKANTDD--DFSPTELRELLQK--------RE---LGH 706

Query: 297 TICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEI 336
           +I ++  + P+D         +    L     +N C   +
Sbjct: 707 SI-TIVDSVPADEPDLGRDGGSRPGRLQGTSSDNQCRPRV 745

Length = 823

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 13/58 (22%)

Query: 320 DVELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
           + +LC IC E    +   PCGH  +C  C   L   KK            CP CR  I
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKK------------CPICRQPI 46

Length = 49

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.1 bits (110), Expect = 6e-07
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
           T LH AA  G  E V  LL+ G    + T  +G    T LH AA  G+LE ++ LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD-INRTDEDGN---TALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 180 LLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238
           LL++G +  ++T GNG    TPLH AA+ G+LE ++ LL  G D    D+ G     +A
Sbjct: 1   LLEHGPIDLNATDGNGN---TPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 24/177 (13%)

Query: 59  IEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN--GKLSCVKKLIESGAFILNFDSLQG 116
            E++ +LL+      N +A +    TPL+ A        S V+ L+++GA + N  +  G
Sbjct: 86  KEIVKLLLE---YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDG 141

Query: 117 RTCLHYAAYYGHSD--CLQALLTAARTSPVAN------TWGFSRFVNIRDESGATPLHLA 168
              LH        D   L+ L+         N      ++G    +NI+D  G TPLH A
Sbjct: 142 ENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVP--INIKDVYGFTPLHYA 199

Query: 169 ARQGWSECVHTLLDNGAL--ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
                 E V  LLD GA     +        G TPLH A    + E  + LL  G  
Sbjct: 200 VYNNNPEFVKYLLDLGANPNLVNKY------GDTPLHIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 67/257 (26%), Positives = 101/257 (39%), Gaps = 38/257 (14%)

Query: 50  LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKK----LIESG 105
           L+LA     I+V+ +LLD      N+   N       +       L+ VK+    L+E G
Sbjct: 39  LYLAKEARNIDVVKILLDN-GADINSSTKNNSTPLHYLSNIKY-NLTDVKEIVKLLLEYG 96

Query: 106 AFILNFDSLQGRTCLHYAAYY--GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT 163
           A +   D+  G T L YA          ++ LL        AN       VNI++  G  
Sbjct: 97  ANVNAPDN-NGITPLLYAISKKSNSYSIVEYLLDNG-----AN-------VNIKNSDGEN 143

Query: 164 PLHLAARQGW--SECVHTLLDNGAL--ACSSTG---GNGYP-------GSTPLHFAARGG 209
            LHL         + +  L+D G    A +        G P       G TPLH+A    
Sbjct: 144 LLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNN 203

Query: 210 SLECIRELLAWGADRVQPDAFGRIP--YAIALKYKHQACAALLNPSSAEPLVWPLQLRNM 267
           + E ++ LL  GA+    + +G  P   AI    K      L N  S + ++  L     
Sbjct: 204 NPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIETLLYFKD 263

Query: 268 TDLNPEAK-ELLEKALM 283
            DLN   K ++L+K++M
Sbjct: 264 KDLNTITKIKMLKKSIM 280

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 101 LIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES 160
           L+E G   LN     G T LH AA YG  + +Q LL       V          N+RD  
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP----GVDL--------NLRDSD 48

Query: 161 GATPLHLA 168
           G T L LA
Sbjct: 49  GLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 61/256 (23%), Positives = 94/256 (36%), Gaps = 54/256 (21%)

Query: 18  AVENGDLQMIEAMVEAD--------------------PTVLGMT---SGYGKQS------ 48
           AVE  +L ++++++                       P  LGM        K S      
Sbjct: 44  AVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLV 103

Query: 49  ALHLAAAYGQIEVLSMLLDQFF--LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           A+  A     +E+  ++L   +  + T        K    ++ A        K L+  GA
Sbjct: 104 AIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEA-----EITKLLLSYGA 158

Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
            I   D  +G T LHYA         + LL+       AN       VNI D++  +PLH
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYG-----AN-------VNIPDKTNNSPLH 206

Query: 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA-ARGGSLECIRELLAWGAD-R 224
            A +      VH LL+NGA    ST      G+TPLH +       + ++ LL  G D  
Sbjct: 207 HAVKHYNKPIVHILLENGA----STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN 262

Query: 225 VQPDAFGRIPYAIALK 240
            +    G      ++K
Sbjct: 263 AKSYILGLTALHSSIK 278

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 48  SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLI 102
           +ALH AA  G++E++  LL++     + +  +    T L +AA NG L  +K L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGV---DINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 12/66 (18%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
           GRT LH AA  G  + ++ LL                 +N  DE G T LH+AA  G  E
Sbjct: 1   GRTALHKAAISGRLELVKYLL--------EKGV----DINRTDEDGNTALHIAAENGNLE 48

Query: 176 CVHTLL 181
            +  LL
Sbjct: 49  VLKLLL 54

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 72/286 (25%), Positives = 116/286 (40%), Gaps = 69/286 (24%)

Query: 13  SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQ--IEVLSMLLDQFF 70
           S L  AV++ ++  I+A+++    +         ++ L L  A     +E   +L D  F
Sbjct: 213 SVLECAVDSKNIDTIKAIIDNRSNI--------NKNDLSLLKAIRNEDLETSLLLYDAGF 264

Query: 71  LYTNTDALNRYKQTPLMVAAMNGKLS-CVKKLIESGAFILNFDSLQGRTCLHYAAYYGH- 128
              + ++++  K TPL  A+    LS  V KL+E GA + N  +++G T L+  A  G+ 
Sbjct: 265 ---SVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYD 320

Query: 129 SDCLQALLTAAR---------TSPVANTWGFSRF-------------VNIRDESGATPLH 166
           ++ ++ L+              +P+       R              VN RD    TP+H
Sbjct: 321 TENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIH 380

Query: 167 LAARQGWSECVHTLLDNGA------------LACSSTGGNGYPG---------------- 198
            AA +     ++TLLD GA            L  +  G N Y                  
Sbjct: 381 YAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNK 440

Query: 199 --STPLHFAARGG-SLECIRELLAWGADRVQPDAFGRIPYAIALKY 241
             STPLH+A +    L+ I  LL  GAD    +   + P  IAL+Y
Sbjct: 441 DLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY 486

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 48  SALHLAAAYGQI--EVLSMLLD-----------QFFL--YTNTDALNRYKQTPLMVAAMN 92
           + LHL     +I  ++L +L+D            + L      +  + Y  TPL  A  N
Sbjct: 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYN 202

Query: 93  GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALL 136
                VK L++ GA   N  +  G T LH A    + +  + LL
Sbjct: 203 NNPEFVKYLLDLGANP-NLVNKYGDTPLHIAILNNNKEIFKLLL 245

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.7 bits (114), Expect = 9e-06
 Identities = 48/160 (30%), Positives = 68/160 (42%), Gaps = 24/160 (15%)

Query: 98  VKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC---LQALLTAARTSPVANTWGFSRFV 154
           V++L+ +GA + NF    G+T LH   +Y        ++ LL A      A+       V
Sbjct: 30  VRRLLAAGADV-NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG-----AD-------V 76

Query: 155 NIRDESGATPLHLAARQGWSE-CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSL-- 211
           N  +  G TPLHL      +   +  L+  GA        +   G TPLH    G ++  
Sbjct: 77  NAPERCGFTPLHLYLYNATTLDVIKLLIKAGA---DVNAKDKV-GRTPLHVYLSGFNINP 132

Query: 212 ECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLN 251
           + IR LL  GAD    D +G  P A+ LK    A   LL 
Sbjct: 133 KVIRLLLRKGADVNALDLYGMTPLAVLLK-SRNANVELLR 171

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA 123
           + +A +    TPL +AA  G L  V+ L++ G  +   DS  G T L  A
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDS-DGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
           +++AL +A  NG+L++++ ++E    V          +ALHLAA  G +E++ +LL+ 
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGADVN--AKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 39/196 (19%), Positives = 55/196 (28%), Gaps = 59/196 (30%)

Query: 65  LLDQFFLYTNTD---------------ALNRYKQTPLMVAAMNG--KLSCVKKLIESGAF 107
           LL                         A +    TPL   A     K S V  L+ +G  
Sbjct: 190 LLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI- 248

Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF------VNIRDESG 161
            +N  +  G+T LHYAA +                   N     R       +N     G
Sbjct: 249 SINARNRYGQTPLHYAAVFN------------------NPRACRRLIALGADINAVSSDG 290

Query: 162 ATPLHLAARQGWSECVHTLLDN--------GALACSSTGGNGYPGSTPLHFAARGGSLEC 213
            TPL L  R      V   L            L  +S  G   P            +  C
Sbjct: 291 NTPLSLMVRNNNGRAVRAALAKNPSAETVAATLNTASVAGGDIPSD---------ATRLC 341

Query: 214 IRELLAWGADRVQPDA 229
           + +++  GA  + P+ 
Sbjct: 342 VAKVVLRGAFSLLPEP 357

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 16/26 (61%), Positives = 19/26 (73%)

Query: 198 GSTPLHFAARGGSLECIRELLAWGAD 223
           G+TPLH AAR G LE ++ LL  GAD
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 16/25 (64%), Positives = 17/25 (68%)

Query: 161 GATPLHLAARQGWSECVHTLLDNGA 185
           G TPLHLAAR G  E V  LL+ GA
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGA 26

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 50/212 (23%), Positives = 80/212 (37%), Gaps = 21/212 (9%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           Q AL  A  +G++++   LLD      N +  +    +P+ +A        +K L++ GA
Sbjct: 3   QVALCDAILFGELDIARRLLDIGI-NPNFEIYDGI--SPIKLAMKFRDSEAIKLLMKHGA 59

Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVN-IRDESGATPL 165
            I +       + LH A   G    ++ LL               +F + +  + G TPL
Sbjct: 60  -IPDVKYPDIESELHDAVEEGDVKAVEELLDL------------GKFADDVFYKDGMTPL 106

Query: 166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV 225
           HLA      + +  L+  GA              +PLH A   G ++ I  L+   A   
Sbjct: 107 HLATILKKLDIMKLLIARGA----DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD 162

Query: 226 QPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
             D  G  P  IA+     A   +L  S A  
Sbjct: 163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.0 bits (106), Expect = 5e-05
 Identities = 49/181 (27%), Positives = 73/181 (40%), Gaps = 22/181 (12%)

Query: 45  GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIES 104
             +S LH A   G ++ +  LLD    + + D   +   TPL +A +  KL  +K LI  
Sbjct: 67  DIESELHDAVEEGDVKAVEELLD-LGKFAD-DVFYKDGMTPLHLATILKKLDIMKLLIAR 124

Query: 105 GA--FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA 162
           GA   I N D     + LH A   G    ++ L+                 ++I D  G 
Sbjct: 125 GADPDIPNTDKF---SPLHLAVMMGDIKGIELLIDHKAC------------LDIEDCCGC 169

Query: 163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
           TPL +A  +G       LLD+GA      G N       L +A     ++ +R  +  GA
Sbjct: 170 TPLIIAMAKGDIAICKMLLDSGA-NIDYFGKN--GCVAALCYAIENNKIDIVRLFIKRGA 226

Query: 223 D 223
           D
Sbjct: 227 D 227

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 20/191 (10%)

Query: 10  RSESALFVAVENG-DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQI-EVLSMLLD 67
           + E+ L++  +NG D + I  ++     V      Y   + LH A+   +  +++  LL+
Sbjct: 306 KGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLY--ITPLHQASTLDRNKDIVITLLE 363

Query: 68  QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127
              L  N +A +   +TP+  AA+   +  +  L++ GA I       G T LH+A   G
Sbjct: 364 ---LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIG-TALHFA-LCG 418

Query: 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS-ECVHTLLDNGAL 186
            +  +       R    AN       VN +++  +TPLH A ++    + +  LLDNGA 
Sbjct: 419 TNPYMSVKTLIDRG---AN-------VNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGAD 468

Query: 187 ACSSTGGNGYP 197
             +    N YP
Sbjct: 469 VNAINIQNQYP 479

Length = 682

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 11/54 (20%)

Query: 324 CCICFENL-CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
           C IC E     + + PCGH  C  C        K            CP CR  I
Sbjct: 2   CPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNT----------CPLCRTPI 45

Length = 45

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
          +AL  A  +G L++++ ++E    +   T   G  +ALH+AA  G +EVL +LL
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDIN-RTDEDG-NTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 115 QGRTCLHYAAYYGHSDCLQALL 136
            G T LH AA  GH + ++ LL
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLL 22

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 14/76 (18%)

Query: 298 ICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKP 357
           + + P+ + S A+  D      +   C IC  +       PCGHQ+C  C + L      
Sbjct: 43  LSAEPNLTTSSADDTD-----EENMNCQICAGSTTYSARYPCGHQICHACAVRL------ 91

Query: 358 DIITAVPEVPACPFCR 373
               A+     CP CR
Sbjct: 92  ---RALYMQKGCPLCR 104

Length = 493

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 13/53 (24%), Positives = 15/53 (28%), Gaps = 14/53 (26%)

Query: 324 CCICFENLCTIE---IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCR 373
           C IC +     E   + PCGH     C                     CP CR
Sbjct: 3   CPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSS-----------NTCPLCR 44

Length = 46

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGA 106
            TPL +AA NG L  VK L+E+GA
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGA 26

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 44/195 (22%), Positives = 79/195 (40%), Gaps = 26/195 (13%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
           Q  L  A + G+L   ++L++ G    NF+   G + +  A  +  S+ ++ L+      
Sbjct: 3   QVALCDAILFGELDIARRLLDIG-INPNFEIYDGISPIKLAMKFRDSEAIKLLMK----- 56

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202
                       +++     + LH A  +G  + V  LLD G  A      +G    TPL
Sbjct: 57  -------HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDG---MTPL 106

Query: 203 HFAARGGSLECIRELLAWGADRVQP--DAFGRIPYAIALK--------YKHQACAALLNP 252
           H A     L+ ++ L+A GAD   P  D F  +  A+ +           H+AC  + + 
Sbjct: 107 HLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC 166

Query: 253 SSAEPLVWPLQLRNM 267
               PL+  +   ++
Sbjct: 167 CGCTPLIIAMAKGDI 181

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 29/110 (26%), Positives = 38/110 (34%), Gaps = 9/110 (8%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTD--ALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
            LH  A     +   +      L       A NRY QTPL  AA+       ++LI  GA
Sbjct: 225 PLHSMATGSSCKRSLV---LPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGA 281

Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALL-TAARTSPVANTWGFSRFVN 155
            I N  S  G T L       +   ++A L        VA T   +    
Sbjct: 282 DI-NAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVAAT--LNTASV 328

Length = 471

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 115 QGRTCLHYAAYYGHSDCLQALLTA 138
            GRT LH AA  G+ + ++ LL  
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDK 24

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 12/110 (10%)

Query: 13  SALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF 70
           + L +A     L +++ ++   ADP +        K S LHLA   G I+ + +L+D   
Sbjct: 104 TPLHLATILKKLDIMKLLIARGADPDI----PNTDKFSPLHLAVMMGDIKGIELLIDH-- 157

Query: 71  LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
                D  +    TPL++A   G ++  K L++SGA   N D      C+
Sbjct: 158 -KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA---NIDYFGKNGCV 203

Length = 413

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 12/52 (23%)

Query: 323 LCCICFENLC-TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCR 373
            C IC + L   + + PCGH  C  C L     K             CP CR
Sbjct: 4   ECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSK-----------CPICR 44

Length = 45

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 81  YKQTPLMVAAMNGKLSCVKKLIESGAFI 108
             +TPL +AA NG L  VK L++ GA I
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV 225
            LAA  G +     LL  GA          Y G TPLH A   G ++ +R LL +GAD  
Sbjct: 88  QLAA-SGDAVGARILLTGGA----DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT 142

Query: 226 QPDAFGRIPYAIA 238
             D  G+ P  +A
Sbjct: 143 LLDKDGKTPLELA 155

Length = 664

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 58/237 (24%), Positives = 79/237 (33%), Gaps = 40/237 (16%)

Query: 12  ESALFV-AVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAY---GQIEVLSMLLD 67
            SALFV A+EN +L++ E ++           G    + LH  +         +L  LL 
Sbjct: 53  RSALFVAAIENENLELTELLLNLS------CRGAVGDTLLHAISLEYVDAVEAILLHLLA 106

Query: 68  QF-----FLYTNTDALNRYK--QTPLMVAAMNGKLSCVKKLIESGAFI------LNFDSL 114
            F         N    + +    T L +AA       VK L+E GA +        F   
Sbjct: 107 AFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKS 166

Query: 115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA----- 169
           QG        Y+G S  L A       S VA        +   D  G T LHL       
Sbjct: 167 QGVDSF----YHGESP-LNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEF 221

Query: 170 RQGWSECVHT----LLDNGALACSSTGGN---GYPGSTPLHFAARGGSLECIRELLA 219
           +  + E         L        S        + G TPL  AA+ G +   R  LA
Sbjct: 222 KAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA 278

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	460
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.88
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.86
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.79
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.76
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.73
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.63
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.56
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.47
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.41
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.4
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.39
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.38
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.36
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.31
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.29
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.25
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.18
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.96
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.88
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	98.86
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.85
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.83
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.8
PF13606	30	Ank_3: Ankyrin repeat	98.78
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.75
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.73
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.72
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	98.7
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.69
PHA02929	238	N1R/p28-like protein; Provisional	98.66
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.65
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.65
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	98.64
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.61
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.59
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	98.58
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.54
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.54
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.5
PHA02926	242	zinc finger-like protein; Provisional	98.48
PF13606	30	Ank_3: Ankyrin repeat	98.48
KOG0522	560	consensus Ankyrin repeat protein [General function	98.48
KOG0522	560	consensus Ankyrin repeat protein [General function	98.48
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.47
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.46
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.4
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.37
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.36
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.31
PF14634	44	zf-RING_5: zinc-RING finger domain	98.28
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.26
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.19
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.19
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.13
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.11
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.06
KOG0511	516	consensus Ankyrin repeat protein [General function	98.02
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.01
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.94
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.93
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.89
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.87
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.87
KOG2384	223	consensus Major histocompatibility complex protein	97.84
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.8
KOG2384	223	consensus Major histocompatibility complex protein	97.76
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.73
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.72
KOG0511	516	consensus Ankyrin repeat protein [General function	97.72
KOG2505	591	consensus Ankyrin repeat protein [General function	97.65
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	97.63
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.55
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.51
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.5
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.49
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.45
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.26
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.21
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.16
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.11
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.07
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.05
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.99
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	96.95
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.86
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.73
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.7
COG5152	259	Uncharacterized conserved protein, contains RING a	96.48
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	96.47
KOG2505	591	consensus Ankyrin repeat protein [General function	96.36
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.26
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.19
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.16
KOG4739	233	consensus Uncharacterized protein involved in syna	96.06
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.96
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.95
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.82
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	95.44
KOG3002	299	consensus Zn finger protein [General function pred	95.35
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.3
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	95.25
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.23
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.93
COG5219	1525	Uncharacterized conserved protein, contains RING Z	94.72
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	94.63
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.81
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	93.7
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	93.47
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	93.44
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.23
PF04641	260	Rtf2: Rtf2 RING-finger	93.03
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	92.91
KOG0297	391	consensus TNF receptor-associated factor [Signal t	92.89
COG5175	480	MOT2 Transcriptional repressor [Transcription]	92.87
KOG3039	303	consensus Uncharacterized conserved protein [Funct	92.68
KOG1002	791	consensus Nucleotide excision repair protein RAD16	92.59
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	92.55
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	92.52
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	91.74
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.0
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.3
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.25
PF14569	80	zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.	89.73
PF04710	416	Pellino: Pellino; InterPro: IPR006800 Pellino is i	89.62
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	89.4
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	89.07
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	88.21
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	88.08
PLN02436	1094	cellulose synthase A	87.41
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	86.66
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	86.18
PLN02189	1040	cellulose synthase	85.82
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	85.28
PLN02400	1085	cellulose synthase	85.16
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	84.86
KOG4367	699	consensus Predicted Zn-finger protein [Function un	84.42
KOG1941	518	consensus Acetylcholine receptor-associated protei	83.77
KOG2660	331	consensus Locus-specific chromosome binding protei	83.15
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	82.55
PLN02915	1044	cellulose synthase A [UDP-forming], catalytic subu	81.31
PHA03096	284	p28-like protein; Provisional	81.18
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	80.65
KOG3842	429	consensus Adaptor protein Pellino [Signal transduc	80.35

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-38  Score=299.68  Aligned_cols=217  Identities=18%  Similarity=0.234  Sum_probs=175.2

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618            7 CRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL   86 (460)
Q Consensus         7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL   86 (460)
                      .+..|.||||+|+..|+.++++.|++.|++++..    ++.||||+|+..|+.+++++|++.   |++++.+|..|+|||
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~----d~~TpLh~Aa~~g~~eiV~lLL~~---Gadvn~~d~~G~TpL   98 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFS---GMDDSQFDDKGNTAL   98 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHH
Confidence            3567888899998888888888888888876432    457889998888888888888888   888888888888999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccCCCCCC-ChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC-CCCCCH
Q 012618           87 MVAAMNGKLSCVKKLIESGAFILNFDSLQG-RTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATP  164 (460)
Q Consensus        87 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d-~~g~t~  164 (460)
                      |+|+..|+.+++++|++.|+++ +..+..| .||||+|+..|+.+++++|++.++..              .| ..|.||
T Consensus        99 h~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--------------~d~~~g~Tp  163 (284)
T PHA02791         99 YYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--------------FDLAILLSC  163 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--------------cccccCccH
Confidence            9998888888999888888887 5555666 48888888888888888888875431              12 247889


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChH-HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Q 012618          165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP-LHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH  243 (460)
Q Consensus       165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp-Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~  243 (460)
                      ||+|+..|+.+++++||++|+    +++.+|..|.|| ||+|+..|+.++|++|+++|++++.+|..| ++|      ++
T Consensus       164 Lh~Aa~~g~~eiv~lLL~~gA----d~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~  232 (284)
T PHA02791        164 IHITIKNGHVDMMILLLDYMT----STNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DD  232 (284)
T ss_pred             HHHHHHcCCHHHHHHHHHCCC----CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CC
Confidence            999999888899999988888    445556677766 888888888999999988898888888854 555      77


Q ss_pred             HHHHHhhCCCCCC
Q 012618          244 QACAALLNPSSAE  256 (460)
Q Consensus       244 ~~i~~~Ll~~ga~  256 (460)
                      .|++++|+++.++
T Consensus       233 ~e~~~~ll~~~~~  245 (284)
T PHA02791        233 AEIAKMIIEKHVE  245 (284)
T ss_pred             HHHHHHHHHhhhh
Confidence            7888888887764

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.3e-38  Score=325.30  Aligned_cols=259  Identities=25%  Similarity=0.360  Sum_probs=239.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHH-----HHHcCcHHHHHHHHhccCCCCCCccCCCCC
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHL-----AAAYGQIEVLSMLLDQFFLYTNTDALNRYK   82 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~-----A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g   82 (460)
                      +..+.||||.|+..|+.++|++|+++|++++..  +..+.||||+     |+..++.+++++|++.   |++++..+..|
T Consensus        32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~--~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~---ga~i~~~d~~g  106 (480)
T PHA03100         32 YKKPVLPLYLAKEARNIDVVKILLDNGADINSS--TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY---GANVNAPDNNG  106 (480)
T ss_pred             hcccchhhhhhhccCCHHHHHHHHHcCCCCCCc--cccCcCHHHHHHHHHHHhhchHHHHHHHHHC---CCCCCCCCCCC
Confidence            457899999999999999999999999998544  4578899999     9999999999999999   99999999999


Q ss_pred             CcHHHHHH--HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC--CHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618           83 QTPLMVAA--MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG--HSDCLQALLTAARTSPVANTWGFSRFVNIRD  158 (460)
Q Consensus        83 ~tpL~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d  158 (460)
                      .||||+|+  ..|+.+++++|++.|+++ +..+..|.||||+|+..|  +.+++++|++.|++            ++.++
T Consensus       107 ~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d------------in~~d  173 (480)
T PHA03100        107 ITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD------------INAKN  173 (480)
T ss_pred             CchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC------------ccccc
Confidence            99999999  999999999999999988 777889999999999999  99999999999998            88899


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCC------ChHHHHHHhcCC--HHHHHHHHHcCCCCCCCCCC
Q 012618          159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPG------STPLHFAARGGS--LECIRELLAWGADRVQPDAF  230 (460)
Q Consensus       159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g------~TpLh~A~~~g~--~~~v~~Ll~~gad~~~~d~~  230 (460)
                      ..|.||||+|+..|+.+++++|+++|+    +.+..+..|      .||||+|+..++  .+++++|+++|++++.+|..
T Consensus       174 ~~g~tpL~~A~~~~~~~iv~~Ll~~ga----~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~  249 (480)
T PHA03100        174 RYGYTPLHIAVEKGNIDVIKFLLDNGA----DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVY  249 (480)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcCC----CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999999999999999999    445556667      899999999999  99999999999999999999


Q ss_pred             CCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618          231 GRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETI  298 (460)
Q Consensus       231 G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~  298 (460)
                      |.||||+|+..++.+++++|+++|+++..          .+..|.++|+.|+...+.+.++.+++...
T Consensus       250 g~TpL~~A~~~~~~~iv~~Ll~~gad~n~----------~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~  307 (480)
T PHA03100        250 GFTPLHYAVYNNNPEFVKYLLDLGANPNL----------VNKYGDTPLHIAILNNNKEIFKLLLNNGP  307 (480)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCc----------cCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Confidence            99999999999999999999999996654          45578899999999999999999987543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.2e-38  Score=316.96  Aligned_cols=228  Identities=22%  Similarity=0.241  Sum_probs=213.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618           11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA   90 (460)
Q Consensus        11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~   90 (460)
                      .+++|+.|+..|+.++|++|+++|++++..  +.+|.||||+|+..|+.+++++|++.   |++++..+..+.||||+|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~--~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~~~t~L~~A~   76 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFE--IYDGISPIKLAMKFRDSEAIKLLMKH---GAIPDVKYPDIESELHDAV   76 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHhC---CCCccccCCCcccHHHHHH
Confidence            468999999999999999999999998653  45799999999999999999999999   9999998899999999999


Q ss_pred             HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH
Q 012618           91 MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR  170 (460)
Q Consensus        91 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~  170 (460)
                      ..|+.+++++|++.|+......+..|.||||+|+..|+.+++++|++.|++            ++.++..|.||||+|+.
T Consensus        77 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad------------~~~~~~~g~tpLh~A~~  144 (413)
T PHA02875         77 EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD------------PDIPNTDKFSPLHLAVM  144 (413)
T ss_pred             HCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC------------CCCCCCCCCCHHHHHHH
Confidence            999999999999999987677777899999999999999999999999998            78899999999999999


Q ss_pred             cCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHhChHHHHHh
Q 012618          171 QGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR-IPYAIALKYKHQACAAL  249 (460)
Q Consensus       171 ~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~-tpL~~A~~~~~~~i~~~  249 (460)
                      .|+.+++++|+++|+    ..+.+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..++.+++++
T Consensus       145 ~~~~~~v~~Ll~~g~----~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~  220 (413)
T PHA02875        145 MGDIKGIELLIDHKA----CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRL  220 (413)
T ss_pred             cCCHHHHHHHHhcCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHH
Confidence            999999999999999    5567788999999999999999999999999999999998874 88999999999999999


Q ss_pred             hCCCCCCCCc
Q 012618          250 LNPSSAEPLV  259 (460)
Q Consensus       250 Ll~~ga~~~~  259 (460)
                      |+++|++++.
T Consensus       221 Ll~~gad~n~  230 (413)
T PHA02875        221 FIKRGADCNI  230 (413)
T ss_pred             HHHCCcCcch
Confidence            9999998875

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.6e-39  Score=267.86  Aligned_cols=210  Identities=33%  Similarity=0.439  Sum_probs=195.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618           11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA   90 (460)
Q Consensus        11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~   90 (460)
                      +-++.+.++......-|+.+++..++.....++.+|+||||+|+..|+.+++.+|+..  .+..+|.+|..|+||||.|+
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq--~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ--PNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhc--CCCCCCCccccCCchhhhhh
Confidence            4567888888899999999999999666666778999999999999999999999964  38899999999999999999


Q ss_pred             HcCCHHHHHHHHHc-CCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618           91 MNGKLSCVKKLIES-GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA  169 (460)
Q Consensus        91 ~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~  169 (460)
                      ..|+.++|+.|+.+ |+++ +..+..|+||||||+..|+.+|+++|++.|+.            ++.+|..|.||||.|+
T Consensus        81 s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~------------i~~kD~~~qtplHRAA  147 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL------------IRIKDKQGQTPLHRAA  147 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCC------------CcccccccCchhHHHH
Confidence            99999999999999 8888 77888999999999999999999999999988            8999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 012618          170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK  240 (460)
Q Consensus       170 ~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~  240 (460)
                      ..|..+++++|+..|+    .++.+|..|+||||.|...|+.++..+|+++|||+...|+.| ||+..|..
T Consensus       148 avGklkvie~Li~~~a----~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  148 AVGKLKVIEYLISQGA----PLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hccchhhHHHHHhcCC----CCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            9999999999999999    778899999999999999999999999999999999999999 99887753

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-37  Score=320.97  Aligned_cols=264  Identities=21%  Similarity=0.256  Sum_probs=238.0

Q ss_pred             CCcccc-CCCCCcHHHHHHHcC---CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC-cHHHHHHHHhccCCCCCCc
Q 012618            2 GQRMSC-RERSESALFVAVENG---DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG-QIEVLSMLLDQFFLYTNTD   76 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~Aa~~g---~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~   76 (460)
                      |.+++. +..|.||||+|+..|   +.++++.|+++|++++..  +..|.||||+|+..| +.+++++|++.   |++++
T Consensus        37 ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~--~~~g~TpLh~A~~~~~~~~iv~lLl~~---ga~in  111 (471)
T PHA03095         37 GADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP--ERCGFTPLHLYLYNATTLDVIKLLIKA---GADVN  111 (471)
T ss_pred             CCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCcHHHHHHHHHc---CCCCC
Confidence            556665 457899999999999   999999999999999665  348999999999999 59999999999   99999


Q ss_pred             cCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC--CHHHHHHHHHhcCCCCCcccCCCcc
Q 012618           77 ALNRYKQTPLMVAA--MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG--HSDCLQALLTAARTSPVANTWGFSR  152 (460)
Q Consensus        77 ~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~~~  152 (460)
                      ..+..|.||||+|+  ..++.+++++|++.|+++ +..+..|.||||+|+..+  +.+++++|++.|++           
T Consensus       112 ~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~-----------  179 (471)
T PHA03095        112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD-----------  179 (471)
T ss_pred             CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC-----------
Confidence            99999999999999  556899999999999998 777889999999999876  68999999999988           


Q ss_pred             ccccCCCCCCCHHHHHHHc--CCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCH--HHHHHHHHcCCCCCCCC
Q 012618          153 FVNIRDESGATPLHLAARQ--GWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSL--ECIRELLAWGADRVQPD  228 (460)
Q Consensus       153 ~v~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~--~~v~~Ll~~gad~~~~d  228 (460)
                       ++..|..|.||||+|+..  +..+++++|+++|+    +++.+|..|.||||+|+..++.  .+++.|++.|+++|.+|
T Consensus       180 -~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~----~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d  254 (471)
T PHA03095        180 -VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGC----DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN  254 (471)
T ss_pred             -CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCC----CCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcC
Confidence             677799999999999975  78899999999999    6677889999999999999875  68899999999999999


Q ss_pred             CCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 012618          229 AFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNET  297 (460)
Q Consensus       229 ~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~  297 (460)
                      ..|+||||+|+..|+.+++++|+++||+++.          .+..|+++|+.|+..++.+.++.++...
T Consensus       255 ~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~----------~~~~g~tpl~~A~~~~~~~~v~~LL~~~  313 (471)
T PHA03095        255 RYGQTPLHYAAVFNNPRACRRLIALGADINA----------VSSDGNTPLSLMVRNNNGRAVRAALAKN  313 (471)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc----------cCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence            9999999999999999999999999997764          4557889999999999999999998654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-37  Score=315.51  Aligned_cols=258  Identities=22%  Similarity=0.285  Sum_probs=224.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccC-----------------
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF-----------------   70 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~-----------------   70 (460)
                      ++.|.||||.|+..|+.++|++|+++|++++..  +..|.||||+|+..|+.+++++|+++..                 
T Consensus        32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~--~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~  109 (434)
T PHA02874         32 VDETTTPLIDAIRSGDAKIVELFIKHGADINHI--NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKT  109 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHH
Confidence            457899999999999999999999999998654  4578899999999999999999998621                 


Q ss_pred             ---CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCccc
Q 012618           71 ---LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANT  147 (460)
Q Consensus        71 ---~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~  147 (460)
                         .|++++.++..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+++      
T Consensus       110 ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~------  182 (434)
T PHA02874        110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY------  182 (434)
T ss_pred             HHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC------
Confidence               13567778899999999999999999999999999998 77888999999999999999999999999987      


Q ss_pred             CCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 012618          148 WGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP  227 (460)
Q Consensus       148 ~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~  227 (460)
                            ++..+..|.||||+|+..|+.+++++|+++|+    ..+..+..|.||||+|+..+. +.+++|+ .|++++.+
T Consensus       183 ------~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~----~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~  250 (434)
T PHA02874        183 ------ANVKDNNGESPLHNAAEYGDYACIKLLIDHGN----HIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQ  250 (434)
T ss_pred             ------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCc
Confidence                  78899999999999999999999999999999    455667789999999999765 5666666 69999999


Q ss_pred             CCCCCCHHHHHHHhC-hHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh-hHHHHHHhhhc
Q 012618          228 DAFGRIPYAIALKYK-HQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES-NEEREKAILNE  296 (460)
Q Consensus       228 d~~G~tpL~~A~~~~-~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~-~~~~~~~ll~~  296 (460)
                      |..|+||||+|+..+ +.+++++|+.+|+++..          .+..|+++|+.|.... .....+.++..
T Consensus       251 d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~----------~d~~g~TpL~~A~~~~~~~~~ik~ll~~  311 (434)
T PHA02874        251 DIDGSTPLHHAINPPCDIDIIDILLYHKADISI----------KDNKGENPIDTAFKYINKDPVIKDIIAN  311 (434)
T ss_pred             CCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCC----------CCCCCCCHHHHHHHhCCccHHHHHHHHh
Confidence            999999999999876 78999999999996654          4567889999998765 44455555543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-37  Score=292.54  Aligned_cols=213  Identities=18%  Similarity=0.116  Sum_probs=194.1

Q ss_pred             cCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q 012618           21 NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKK  100 (460)
Q Consensus        21 ~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  100 (460)
                      .++.+++++|++++++.    .+.+|.||||+|+..|+.+++++|++.   +++++..+  |.||||+|+..|+.+++++
T Consensus         9 ~~~~~~~~~Lis~~a~~----~D~~G~TpLh~Aa~~g~~eiv~~Ll~~---ga~~n~~d--~~TpLh~Aa~~g~~eiV~l   79 (284)
T PHA02791          9 WKSKQLKSFLSSKDAFK----ADVHGHSALYYAIADNNVRLVCTLLNA---GALKNLLE--NEFPLHQAATLEDTKIVKI   79 (284)
T ss_pred             cCHHHHHHHHHhCCCCC----CCCCCCcHHHHHHHcCCHHHHHHHHHC---cCCCcCCC--CCCHHHHHHHCCCHHHHHH
Confidence            57899999999998853    356899999999999999999999999   88888764  7899999999999999999


Q ss_pred             HHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCC-CHHHHHHHcCCHHHHHH
Q 012618          101 LIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA-TPLHLAARQGWSECVHT  179 (460)
Q Consensus       101 Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~-t~L~~A~~~g~~~~v~~  179 (460)
                      |++.|+++ +..+..|+||||+|+..|+.+++++|++.+++            ++.++..|. ||||+|+..|+.++|++
T Consensus        80 LL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad------------in~~~~~g~~TpL~~Aa~~g~~eivk~  146 (284)
T PHA02791         80 LLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR------------LMFYGKTGWKTSFYHAVMLNDVSIVSY  146 (284)
T ss_pred             HHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------cCccCCCCCcHHHHHHHHcCCHHHHHH
Confidence            99999988 77888999999999999999999999999988            788888885 89999999999999999


Q ss_pred             HHHcCCccccCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHhChHHHHHhhCCCCCCC
Q 012618          180 LLDNGALACSSTGGNG-YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP-YAIALKYKHQACAALLNPSSAEP  257 (460)
Q Consensus       180 Ll~~ga~~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tp-L~~A~~~~~~~i~~~Ll~~ga~~  257 (460)
                      |++++...      .| ..|.||||+|++.|+.+++++|+++|++++..|..|.|| ||+|+..++.+++++|+++|+++
T Consensus       147 LL~~~~~~------~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        147 FLSEIPST------FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI  220 (284)
T ss_pred             HHhcCCcc------cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            99997632      12 248999999999999999999999999999999999987 99999999999999999999988


Q ss_pred             Cccc
Q 012618          258 LVWP  261 (460)
Q Consensus       258 ~~~~  261 (460)
                      +...
T Consensus       221 n~~~  224 (284)
T PHA02791        221 YSVN  224 (284)
T ss_pred             ccCc
Confidence            6543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=5.8e-37  Score=310.98  Aligned_cols=264  Identities=18%  Similarity=0.192  Sum_probs=173.7

Q ss_pred             CcHHHHHHH--cCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618           12 ESALFVAVE--NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA   89 (460)
Q Consensus        12 ~t~L~~Aa~--~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A   89 (460)
                      .++||.++.  .++.++|+.|+++|++++..  +.+|.||||+|+..|+.++|++||++   |+++|.+|..|.||||+|
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~--d~~G~TpLh~Aa~~g~~eiv~lLL~~---GAdin~~d~~g~TpLh~A  112 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNET--DDDGNYPLHIASKINNNRIVAMLLTH---GADPNACDKQHKTPLYYL  112 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHC---cCCCCCCCCCCCCHHHHH
Confidence            567776553  34667777777777776443  45677777777777777777777777   777777777777777777


Q ss_pred             HHcC--CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHH
Q 012618           90 AMNG--KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL  167 (460)
Q Consensus        90 ~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~  167 (460)
                      +..+  ..+++++|+++|+++....+..|.|||| |+..++.+++++|++.+++            ++.+|..|.||||+
T Consensus       113 ~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad------------~~~~d~~G~t~Lh~  179 (446)
T PHA02946        113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE------------ARIVDKFGKNHIHR  179 (446)
T ss_pred             HHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc------------ccccCCCCCCHHHH
Confidence            6654  3677777777777774455667777775 5556777777777777766            67777777777777


Q ss_pred             HHHcCC--HHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Q 012618          168 AARQGW--SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG--SLECIRELLAWGADRVQPDAFGRIPYAIALKYKH  243 (460)
Q Consensus       168 A~~~g~--~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~  243 (460)
                      |+..++  .+++++|+++|+    +++.+|..|.||||+|+..+  +.+++++|+. |++++.+|..|.||||+|+..++
T Consensus       180 A~~~~~~~~~~v~~Ll~~Ga----din~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        180 HLMSDNPKASTISWMMKLGI----SPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             HHHhcCCCHHHHHHHHHcCC----CCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCC
Confidence            766443  567777777777    44555667777777777664  6677777764 67777777777777777777766


Q ss_pred             -HHHHHhhCCCCCCCCccccccc----------ccCCC-CHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618          244 -QACAALLNPSSAEPLVWPLQLR----------NMTDL-NPEAKELLEKALMESNEEREKAILNETI  298 (460)
Q Consensus       244 -~~i~~~Ll~~ga~~~~~~~~~~----------~~~~~-~~~~~~~L~~a~~~~~~~~~~~ll~~~~  298 (460)
                       .+++++|+.+|+..........          .+... ...++|+|+.|+..++.+.++.+++...
T Consensus       255 ~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~  321 (446)
T PHA02946        255 PAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI  321 (446)
T ss_pred             hHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence             3677777777654332211000          01111 1234566777777766666666665544

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=308.66  Aligned_cols=266  Identities=14%  Similarity=0.189  Sum_probs=225.3

Q ss_pred             CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC--cHHHHHHHHhccCCCCCCcc-
Q 012618            2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG--QIEVLSMLLDQFFLYTNTDA-   77 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~-   77 (460)
                      |.+++. +..|.||||+|+..|+.++|++||++|++++.  .+..|.||||+|+..+  ..+++++|+++   |++++. 
T Consensus        62 Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~--~d~~g~TpLh~A~~~~~~~~e~v~lLl~~---Gadin~~  136 (446)
T PHA02946         62 GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNA--CDKQHKTPLYYLSGTDDEVIERINLLVQY---GAKINNS  136 (446)
T ss_pred             cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC--CCCCCCCHHHHHHHcCCchHHHHHHHHHc---CCCcccc
Confidence            555664 56899999999999999999999999999864  3568999999999876  48999999999   999995 


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC--HHHHHHHHHhcCCCCCcccCCCccccc
Q 012618           78 LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH--SDCLQALLTAARTSPVANTWGFSRFVN  155 (460)
Q Consensus        78 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~--~~iv~~Ll~~~~~~~~~~~~~~~~~v~  155 (460)
                      .+..|.|||| |+..++.+++++|++.|+++ +..|..|+||||+|+..++  .+++++|++.|++            ++
T Consensus       137 ~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad------------in  202 (446)
T PHA02946        137 VDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS------------PS  202 (446)
T ss_pred             cCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC------------Cc
Confidence            6889999997 67789999999999999988 7888999999999987554  6899999999998            89


Q ss_pred             cCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCC-HHHHHHHHHcCCCCCCCCCCCC
Q 012618          156 IRDESGATPLHLAARQG--WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGS-LECIRELLAWGADRVQPDAFGR  232 (460)
Q Consensus       156 ~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~-~~~v~~Ll~~gad~~~~d~~G~  232 (460)
                      .+|..|.||||+|+..+  +.+++++|++ |+    +++.+|..|.||||+|+..++ .+++++|+++|++++     ++
T Consensus       203 ~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-ga----din~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~-----~~  272 (446)
T PHA02946        203 KPDHDGNTPLHIVCSKTVKNVDIINLLLP-ST----DVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT-----DQ  272 (446)
T ss_pred             ccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CC----CCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC-----Cc
Confidence            99999999999999986  7899999995 77    667788899999999999988 589999999997764     33


Q ss_pred             CHHHHHHHhChHHHHHhhCCCCCCCCcccccc----------cccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 012618          233 IPYAIALKYKHQACAALLNPSSAEPLVWPLQL----------RNMTDLNPEAKELLEKALMESNEEREKAILNET  297 (460)
Q Consensus       233 tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~----------~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~  297 (460)
                       ++++|+..+..+++++|..+|......+...          +.+...+..++++|+.|+..++.+.++.++...
T Consensus       273 -~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g  346 (446)
T PHA02946        273 -TVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDIICEDAMYYAVLSEYETMVDYLLFNH  346 (446)
T ss_pred             -HHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCCccccHHHHHHHhCHHHHHHHHHHCC
Confidence             3899999999999999999886433222111          122334567899999999999999999988544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2.2e-36  Score=316.26  Aligned_cols=263  Identities=18%  Similarity=0.182  Sum_probs=222.0

Q ss_pred             Ccccc--CCCCCcHHHHHHH--cCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCc--HHHHHHHHhccCCCCCCc
Q 012618            3 QRMSC--RERSESALFVAVE--NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQ--IEVLSMLLDQFFLYTNTD   76 (460)
Q Consensus         3 ~~~~~--~~~g~t~L~~Aa~--~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~iv~~Ll~~~~~~~~~~   76 (460)
                      .+++.  ++.|.||||.|+.  .++.++|++|+++|++++..  +..|.||||+|+..|+  .++|++||+.   |+++|
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~k--D~~G~TPLH~Aa~~g~~~~eIVklLLe~---GADVN  241 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQ--NNHLITPLHTYLITGNVCASVIKKIIEL---GGDMD  241 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCCCHHHHHHHHHc---CCCCC
Confidence            44553  6689999999875  46899999999999998654  5689999999999995  5999999999   99999


Q ss_pred             cCCCCCCcHHHHH-------------------------------------HHcCCHHHHHHHHHcCCccccCCCCCCChH
Q 012618           77 ALNRYKQTPLMVA-------------------------------------AMNGKLSCVKKLIESGAFILNFDSLQGRTC  119 (460)
Q Consensus        77 ~~~~~g~tpL~~A-------------------------------------~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~  119 (460)
                      .+|..|+||||+|                                     +..|+.+++++|++.|+++ +.+|..|+||
T Consensus       242 ~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TP  320 (764)
T PHA02716        242 MKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTC  320 (764)
T ss_pred             CCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCH
Confidence            9999999999975                                     3457889999999999997 7788999999


Q ss_pred             HHHHHH--cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH--------------cCCHHHHHHHHHc
Q 012618          120 LHYAAY--YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR--------------QGWSECVHTLLDN  183 (460)
Q Consensus       120 L~~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~--------------~g~~~~v~~Ll~~  183 (460)
                      ||+|+.  .++.+++++|++.|++            ++.+|..|.||||+|+.              .++.+++++|+++
T Consensus       321 LH~Aaa~~~~~~eIVklLLe~GAD------------IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~  388 (764)
T PHA02716        321 LHQYILRHNISTDIIKLLHEYGND------------LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISL  388 (764)
T ss_pred             HHHHHHHhCCCchHHHHHHHcCCC------------CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHC
Confidence            999864  4688999999999998            89999999999999875              3689999999999


Q ss_pred             CCccccCCCCCCCCCChHHHH----HHhcCCHHHHHHHHHcCC-------------------------------------
Q 012618          184 GALACSSTGGNGYPGSTPLHF----AARGGSLECIRELLAWGA-------------------------------------  222 (460)
Q Consensus       184 ga~~~~~~~~~d~~g~TpLh~----A~~~g~~~~v~~Ll~~ga-------------------------------------  222 (460)
                      |+    +++.+|..|.||||.    |...++.+++++|++.|+                                     
T Consensus       389 GA----DIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~  464 (764)
T PHA02716        389 GA----DITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLY  464 (764)
T ss_pred             CC----CCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhh
Confidence            99    566778899999994    233567899998887643                                     


Q ss_pred             ------------------------CCCCCCCCCCCHHHHHHHhChHH-----HHHhhCCCCCCCCcccccccccCCCCHH
Q 012618          223 ------------------------DRVQPDAFGRIPYAIALKYKHQA-----CAALLNPSSAEPLVWPLQLRNMTDLNPE  273 (460)
Q Consensus       223 ------------------------d~~~~d~~G~tpL~~A~~~~~~~-----i~~~Ll~~ga~~~~~~~~~~~~~~~~~~  273 (460)
                                              +++..|..|+||||+|+..++.+     ++++|++.|++++.          .+..
T Consensus       465 ~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~----------~d~~  534 (764)
T PHA02716        465 TDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINI----------PTKN  534 (764)
T ss_pred             hhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcc----------cCCC
Confidence                                    23445778999999999998774     55999999996553          6778


Q ss_pred             HHHHHHHHHhhhhH-----HHHHHhhhcc
Q 012618          274 AKELLEKALMESNE-----EREKAILNET  297 (460)
Q Consensus       274 ~~~~L~~a~~~~~~-----~~~~~ll~~~  297 (460)
                      |+|+|+.|+.++..     +.++.+++..
T Consensus       535 G~TPLh~A~~~g~~~~~~~eIvk~LL~~g  563 (764)
T PHA02716        535 GVTPLMLTMRNNRLSGHQWYIVKNILDKR  563 (764)
T ss_pred             CCCHHHHHHHcCCccccHHHHHHHHHhcC
Confidence            99999999998854     8889888743

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-36  Score=312.36  Aligned_cols=236  Identities=25%  Similarity=0.285  Sum_probs=218.8

Q ss_pred             CCcccc-CCCCCcHHHH-----HHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHH--HcCcHHHHHHHHhccCCCC
Q 012618            2 GQRMSC-RERSESALFV-----AVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAA--AYGQIEVLSMLLDQFFLYT   73 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~-----Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~   73 (460)
                      |.++.. +..+.||||+     |+..|+.++++.|+++|++++.  .+..|.||||+|+  ..|+.+++++|++.   |+
T Consensus        58 g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~--~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~---g~  132 (480)
T PHA03100         58 GADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNA--PDNNGITPLLYAISKKSNSYSIVEYLLDN---GA  132 (480)
T ss_pred             CCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCC--CCCCCCchhhHHHhcccChHHHHHHHHHc---CC
Confidence            445544 4568899999     9999999999999999999843  3568899999999  99999999999999   99


Q ss_pred             CCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCc
Q 012618           74 NTDALNRYKQTPLMVAAMNG--KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFS  151 (460)
Q Consensus        74 ~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  151 (460)
                      +++..+..|.||||+|+..+  +.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.|++          
T Consensus       133 ~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~----------  201 (480)
T PHA03100        133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD----------  201 (480)
T ss_pred             CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC----------
Confidence            99999999999999999999  999999999999998 66777999999999999999999999999998          


Q ss_pred             cccccCCCCC------CCHHHHHHHcCC--HHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618          152 RFVNIRDESG------ATPLHLAARQGW--SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD  223 (460)
Q Consensus       152 ~~v~~~d~~g------~t~L~~A~~~g~--~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad  223 (460)
                        ++..+..|      .||||+|+..++  .+++++|+++|+    +.+.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus       202 --~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~----din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad  275 (480)
T PHA03100        202 --INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGV----PINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN  275 (480)
T ss_pred             --ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence              77788888      899999999999  999999999999    5566788999999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCc
Q 012618          224 RVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLV  259 (460)
Q Consensus       224 ~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  259 (460)
                      ++.+|..|.|||++|+..++.+++++|+++|++...
T Consensus       276 ~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        276 PNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             CCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence            999999999999999999999999999999997654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-35  Score=301.64  Aligned_cols=252  Identities=23%  Similarity=0.370  Sum_probs=221.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc
Q 012618           13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN   92 (460)
Q Consensus        13 t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~   92 (460)
                      ..|..|+..|+++.|+.|++.++...... +.+|.||||.|+..|+.++|++|++.   |++++..+..|.||||+|+..
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~-~~~~~tpL~~A~~~g~~~iv~~Ll~~---Ga~~n~~~~~~~t~L~~A~~~   78 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINIS-VDETTTPLIDAIRSGDAKIVELFIKH---GADINHINTKIPHPLLTAIKI   78 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHc
Confidence            46899999999999999998776643333 35788999999999999999999999   999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCcc----------------------ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCC
Q 012618           93 GKLSCVKKLIESGAFI----------------------LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGF  150 (460)
Q Consensus        93 g~~~~v~~Ll~~g~~~----------------------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~  150 (460)
                      |+.+++++|+++|+++                      .+..+..|.||||+|+..|+.+++++|++.|++         
T Consensus        79 ~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad---------  149 (434)
T PHA02874         79 GAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD---------  149 (434)
T ss_pred             CCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC---------
Confidence            9999999999988653                      245677899999999999999999999999988         


Q ss_pred             ccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCC
Q 012618          151 SRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAF  230 (460)
Q Consensus       151 ~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~  230 (460)
                         ++.+|..|.||||+|+..++.+++++|+++|+    ..+..+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus       150 ---~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~----~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~  222 (434)
T PHA02874        150 ---VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGA----YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN  222 (434)
T ss_pred             ---CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC
Confidence               88999999999999999999999999999999    55667788999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh-hHHHHHHhhhc
Q 012618          231 GRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES-NEEREKAILNE  296 (460)
Q Consensus       231 G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~-~~~~~~~ll~~  296 (460)
                      |.||||+|+..+. +++.+|+ .|+++          ...+..|+|+|+.|+... ..+.++.++..
T Consensus       223 g~TpL~~A~~~~~-~~i~~Ll-~~~~i----------n~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~  277 (434)
T PHA02874        223 GFTPLHNAIIHNR-SAIELLI-NNASI----------NDQDIDGSTPLHHAINPPCDIDIIDILLYH  277 (434)
T ss_pred             CCCHHHHHHHCCh-HHHHHHH-cCCCC----------CCcCCCCCCHHHHHHhcCCcHHHHHHHHHC
Confidence            9999999999876 4566665 35533          345667899999999865 67788888754

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-35  Score=306.30  Aligned_cols=240  Identities=25%  Similarity=0.274  Sum_probs=210.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618           10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA   89 (460)
Q Consensus        10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A   89 (460)
                      .+.||||+|+..|+.++|++|+++|++++..  +.+|.||||+|+..|+.+++++|++.   +...+.  ..+.+||+.|
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~--d~~g~TpLh~A~~~g~~~~v~~Ll~~---~~~~~~--~~~~~~l~~a  108 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQP--DHRDLTPLHIICKEPNKLGMKEMIRS---INKCSV--FYTLVAIKDA  108 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCccHhHHHHHHHH---Hhcccc--ccchhhHHHH
Confidence            5789999999999999999999999998654  56899999999999999999999997   544443  5678999999


Q ss_pred             HHcCCHH---------------------------------HHHHHHHcCCccccCCCCC-CChHHHHHHHcCCHHHHHHH
Q 012618           90 AMNGKLS---------------------------------CVKKLIESGAFILNFDSLQ-GRTCLHYAAYYGHSDCLQAL  135 (460)
Q Consensus        90 ~~~g~~~---------------------------------~v~~Ll~~g~~~~~~~~~~-g~t~L~~A~~~g~~~iv~~L  135 (460)
                      +..++.+                                 ++++|++.|+++ +..+.. |.||||+|+..|+.+++++|
T Consensus       109 ~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        109 FNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             HHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHH
Confidence            9887654                                 556666677777 555666 99999999999999999999


Q ss_pred             HHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhc-CCHHHH
Q 012618          136 LTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARG-GSLECI  214 (460)
Q Consensus       136 l~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~-g~~~~v  214 (460)
                      ++.|++            ++.+|..|.||||+|+..++.+++++|++.|+    +.+.+|..|.||||+|+.. ++.+++
T Consensus       188 l~~gad------------~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga----~in~~d~~g~TpLh~A~~~~~~~~iv  251 (477)
T PHA02878        188 LSYGAN------------VNIPDKTNNSPLHHAVKHYNKPIVHILLENGA----STDARDKCGNTPLHISVGYCKDYDIL  251 (477)
T ss_pred             HHCCCC------------CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHhcCCHHHH
Confidence            999988            89999999999999999999999999999999    5567788999999999975 799999


Q ss_pred             HHHHHcCCCCCCCCC-CCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh
Q 012618          215 RELLAWGADRVQPDA-FGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES  285 (460)
Q Consensus       215 ~~Ll~~gad~~~~d~-~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~  285 (460)
                      ++|+++|++++..+. .|.||||+|  .++.+++++|+++|++++.          .+..|.|+|+.|+...
T Consensus       252 ~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~----------~d~~g~TpL~~A~~~~  311 (477)
T PHA02878        252 KLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINS----------LNSYKLTPLSSAVKQY  311 (477)
T ss_pred             HHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCC----------cCCCCCCHHHHHHHHc
Confidence            999999999999886 799999999  5678999999999997664          4567889999998743

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.3e-35  Score=310.57  Aligned_cols=241  Identities=17%  Similarity=0.128  Sum_probs=205.6

Q ss_pred             CCcccc-CCCCCcHHHHHHHcCC--HHHHHHHHHcCCCcccccCCCCCccHHHHH-------------------------
Q 012618            2 GQRMSC-RERSESALFVAVENGD--LQMIEAMVEADPTVLGMTSGYGKQSALHLA-------------------------   53 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~Aa~~g~--~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A-------------------------   53 (460)
                      |.+++. +..|.||||+|+..|+  .++|++|+++|++++..  +..|.||||+|                         
T Consensus       202 GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k--D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~  279 (764)
T PHA02716        202 GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMK--CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVK  279 (764)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccc
Confidence            556665 5689999999999995  59999999999998654  46899999975                         


Q ss_pred             ------------HHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCccccCCCCCCChH
Q 012618           54 ------------AAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAM--NGKLSCVKKLIESGAFILNFDSLQGRTC  119 (460)
Q Consensus        54 ------------~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~~g~t~  119 (460)
                                  +..|+.+++++|++.   |++++.+|..|+||||+|+.  .++.+++++|++.|+++ +.+|..|+||
T Consensus       280 ~~~~~L~~~i~AA~~g~leiVklLLe~---GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TP  355 (764)
T PHA02716        280 NIPMILHSYITLARNIDISVVYSFLQP---GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTV  355 (764)
T ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHhC---CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCH
Confidence                        445788999999999   99999999999999999875  46899999999999998 7788999999


Q ss_pred             HHHHHH--------------cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHH----HHcCCHHHHHHHH
Q 012618          120 LHYAAY--------------YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA----ARQGWSECVHTLL  181 (460)
Q Consensus       120 L~~A~~--------------~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A----~~~g~~~~v~~Ll  181 (460)
                      ||+|+.              .++.+++++|++.|++            ++.+|..|.||||.+    ...++.+++++|+
T Consensus       356 LH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD------------In~kn~~G~TPLh~y~~~a~n~~~~dIvklLi  423 (764)
T PHA02716        356 LHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGAD------------ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLI  423 (764)
T ss_pred             HHHHHHhhhhhccccccccccChHHHHHHHHHCCCC------------CCCcCCCCCChHHHHHHHHHhcChHHHHHHHH
Confidence            999875              3689999999999998            899999999999942    3357789999999


Q ss_pred             HcCCccc---------------------------------------------------------cCCCCCCCCCChHHHH
Q 012618          182 DNGALAC---------------------------------------------------------SSTGGNGYPGSTPLHF  204 (460)
Q Consensus       182 ~~ga~~~---------------------------------------------------------~~~~~~d~~g~TpLh~  204 (460)
                      +.|+...                                                         ...+..|..|+||||+
T Consensus       424 s~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~  503 (764)
T PHA02716        424 SDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHV  503 (764)
T ss_pred             hCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHH
Confidence            9764210                                                         0123446789999999


Q ss_pred             HHhcCCH-----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH-----HHHHhhCCCCCCCCcc
Q 012618          205 AARGGSL-----ECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ-----ACAALLNPSSAEPLVW  260 (460)
Q Consensus       205 A~~~g~~-----~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~-----~i~~~Ll~~ga~~~~~  260 (460)
                      |+..|+.     +++++|+++|+|+|.+|.+|+||||+|+++++.     +++++|+++|+++...
T Consensus       504 Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        504 SIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             HHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH
Confidence            9999886     455999999999999999999999999999965     9999999999987654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-35  Score=303.44  Aligned_cols=235  Identities=23%  Similarity=0.276  Sum_probs=213.9

Q ss_pred             CCcccc-CCCCCcHHHHHHHcC-CHHHHHHHHHcCCCcccccCCCCCccHHHHHH--HcCcHHHHHHHHhccCCCCCCcc
Q 012618            2 GQRMSC-RERSESALFVAVENG-DLQMIEAMVEADPTVLGMTSGYGKQSALHLAA--AYGQIEVLSMLLDQFFLYTNTDA   77 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~Aa~~g-~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~~~~   77 (460)
                      |.+++. +..|.||||+|+..| ..+++++|+++|++++..  +..|.||||+|+  ..++.+++++|++.   |++++.
T Consensus        73 Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~--~~~g~tpLh~a~~~~~~~~~iv~~Ll~~---gad~~~  147 (471)
T PHA03095         73 GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAK--DKVGRTPLHVYLSGFNINPKVIRLLLRK---GADVNA  147 (471)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCC--CCCCCCHHHHHhhCCcCCHHHHHHHHHc---CCCCCc
Confidence            566665 458999999999999 599999999999998554  467899999999  56789999999999   999999


Q ss_pred             CCCCCCcHHHHHHHcC--CHHHHHHHHHcCCccccCCCCCCChHHHHHHHc--CCHHHHHHHHHhcCCCCCcccCCCccc
Q 012618           78 LNRYKQTPLMVAAMNG--KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY--GHSDCLQALLTAARTSPVANTWGFSRF  153 (460)
Q Consensus        78 ~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~~~~  153 (460)
                      .|..|.||||+|+..+  +.+++++|++.|+++... +..|+||||+|+..  ++.+++++|++.|++            
T Consensus       148 ~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~------------  214 (471)
T PHA03095        148 LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCD------------  214 (471)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC------------
Confidence            9999999999999876  689999999999998444 88999999999875  788999999999998            


Q ss_pred             cccCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 012618          154 VNIRDESGATPLHLAARQGWS--ECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFG  231 (460)
Q Consensus       154 v~~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G  231 (460)
                      ++.+|..|.||||+|+..|+.  .+++.|++.|+    +.+.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|
T Consensus       215 ~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~----din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g  290 (471)
T PHA03095        215 PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI----SINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG  290 (471)
T ss_pred             CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            799999999999999999875  68999999999    566778899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHhChHHHHHhhCCCCCCCC
Q 012618          232 RIPYAIALKYKHQACAALLNPSSAEPL  258 (460)
Q Consensus       232 ~tpL~~A~~~~~~~i~~~Ll~~ga~~~  258 (460)
                      +|||++|+..++.+++++|++.++++.
T Consensus       291 ~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        291 NTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            999999999999999999999998664

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=311.72  Aligned_cols=266  Identities=24%  Similarity=0.276  Sum_probs=175.2

Q ss_pred             CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccC----------
Q 012618            2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF----------   70 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~----------   70 (460)
                      |.+++. +..|.||||+|+..|+.++|++|+++|++++..  +.+|.||||+|+..++.+++++|++...          
T Consensus       168 Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~--~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~  245 (682)
T PHA02876        168 GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNII--ALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLL  245 (682)
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCcc--CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHH
Confidence            455554 456888888888888888888888888887543  3467788888888877777766654311          


Q ss_pred             ----------------CCCCCccCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCccccCCCCCCChHHHHHHHcC-CHHHH
Q 012618           71 ----------------LYTNTDALNRYKQTPLMVAAMNGKL-SCVKKLIESGAFILNFDSLQGRTCLHYAAYYG-HSDCL  132 (460)
Q Consensus        71 ----------------~~~~~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g-~~~iv  132 (460)
                                      .|++++..+..|.||||+|+..++. +++++|++.|+++ +..+..|.||||+|+..| +.+++
T Consensus       246 ~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v  324 (682)
T PHA02876        246 KAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENI  324 (682)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHH
Confidence                            1445666677788888888887775 5777888888776 666677888888888777 47778


Q ss_pred             HHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCH
Q 012618          133 QALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ-GWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSL  211 (460)
Q Consensus       133 ~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~  211 (460)
                      ++|+..+++            ++..|..|.||||+|+.. +..+++++|++.|+    +.+.+|..|.||||+|+..|+.
T Consensus       325 ~~Ll~~gad------------in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~ga----din~~d~~G~TpLh~Aa~~~~~  388 (682)
T PHA02876        325 RTLIMLGAD------------VNAADRLYITPLHQASTLDRNKDIVITLLELGA----NVNARDYCDKTPIHYAAVRNNV  388 (682)
T ss_pred             HHHHHcCCC------------CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCC----CCccCCCCCCCHHHHHHHcCCH
Confidence            888877776            555666666666666653 34556666666666    3344455566666666666666


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh-HHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh-hHHH
Q 012618          212 ECIRELLAWGADRVQPDAFGRIPYAIALKYKH-QACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES-NEER  289 (460)
Q Consensus       212 ~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~-~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~-~~~~  289 (460)
                      +++++|+++|++++..+..|.||||+|+..++ ..++++|+++|++++          ..+..|+|+|+.|+..+ ..+.
T Consensus       389 ~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin----------~~d~~G~TpLh~Aa~~~~~~~i  458 (682)
T PHA02876        389 VIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN----------SKNKDLSTPLHYACKKNCKLDV  458 (682)
T ss_pred             HHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC----------cCCCCCChHHHHHHHhCCcHHH
Confidence            66666666666666666666666666654433 345566666665332          34556667777776644 3455


Q ss_pred             HHHhhhc
Q 012618          290 EKAILNE  296 (460)
Q Consensus       290 ~~~ll~~  296 (460)
                      ++.+++.
T Consensus       459 v~lLl~~  465 (682)
T PHA02876        459 IEMLLDN  465 (682)
T ss_pred             HHHHHHC
Confidence            6665543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=8.9e-36  Score=299.43  Aligned_cols=273  Identities=26%  Similarity=0.315  Sum_probs=207.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHH
Q 012618            9 ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMV   88 (460)
Q Consensus         9 ~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~   88 (460)
                      ..+.+|+|+|+..|+++.++.|++++++++..  +.+|.||||.|+..++.|+.+.|++.   ++++-..|.+|.+|+|.
T Consensus       119 ~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~--de~~~TpLh~A~~~~~~E~~k~Li~~---~a~~~K~~~~~~~~iH~  193 (929)
T KOG0510|consen  119 LNKNAPLHLAADSGNYSCLKLLLDYGADVNLE--DENGFTPLHLAARKNKVEAKKELINK---GADPCKSDIDGNFPIHE  193 (929)
T ss_pred             hhccCchhhccccchHHHHHHHHHhcCCcccc--ccCCCchhhHHHhcChHHHHHHHHhc---CCCCCcccCcCCchHHH
Confidence            34555666666666666666666666555332  34555666666666666655666665   66666666666666666


Q ss_pred             HHHcCCHHHHHHHHH-----cCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcc---cCCCccccccCCCC
Q 012618           89 AAMNGKLSCVKKLIE-----SGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVAN---TWGFSRFVNIRDES  160 (460)
Q Consensus        89 A~~~g~~~~v~~Ll~-----~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~---~~~~~~~v~~~d~~  160 (460)
                      |++.|..++++..+.     ++..+ ++.+..+.||||.|+..|+.++++.+|+.+.......   .......+|..|.+
T Consensus       194 aa~s~s~e~mEi~l~~~g~~r~~~i-n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~d  272 (929)
T KOG0510|consen  194 AARSGSKECMEIFLPEHGYERQTHI-NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDND  272 (929)
T ss_pred             HHHhcchhhhhhhhccccchhhccc-ccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhccccc
Confidence            666666666666665     33334 6666778888888888888888888888776543222   22344568999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHH-cC-CCCCCCCCCCCCHHHHH
Q 012618          161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA-WG-ADRVQPDAFGRIPYAIA  238 (460)
Q Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~g-ad~~~~d~~G~tpL~~A  238 (460)
                      |.||||+|++.|+.++++.|+..|+    +.+.++.++.||||.||++|+.++|+.||+ +| ...|..|..|.||||+|
T Consensus       273 g~tpLH~a~r~G~~~svd~Ll~~Ga----~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla  348 (929)
T KOG0510|consen  273 GCTPLHYAARQGGPESVDNLLGFGA----SINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA  348 (929)
T ss_pred             CCchHHHHHHcCChhHHHHHHHcCC----cccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence            9999999999999999999999999    666777899999999999999999999999 54 56788899999999999


Q ss_pred             HHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618          239 LKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETI  298 (460)
Q Consensus       239 ~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~  298 (460)
                      ++.||..++++|+++||....       ....+.+++|+|+.|+..++...++.++....
T Consensus       349 a~~gH~~v~qlLl~~GA~~~~-------~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga  401 (929)
T KOG0510|consen  349 AKSGHDRVVQLLLNKGALFLN-------MSEADSDGNTALHLAAKYGNTSAVQKLISHGA  401 (929)
T ss_pred             hhcCHHHHHHHHHhcChhhhc-------ccccccCCchhhhHHHHhccHHHHHHHHHcCC
Confidence            999999999999999996553       22458899999999999999999999986654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.7e-35  Score=300.51  Aligned_cols=262  Identities=15%  Similarity=0.152  Sum_probs=222.4

Q ss_pred             CCccccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC------cHHHHHHHHhccCCCC
Q 012618            2 GQRMSCRERSESALFVAVEN--GDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG------QIEVLSMLLDQFFLYT   73 (460)
Q Consensus         2 g~~~~~~~~g~t~L~~Aa~~--g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g------~~~iv~~Ll~~~~~~~   73 (460)
                      |.+++....|.|+|+.++..  ++.++|++|+++|++++...   .+.||||.|+.++      +.+++++|+++   |+
T Consensus        26 GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~---~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~---Ga   99 (494)
T PHA02989         26 GFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG---YIETPLCAVLRNREITSNKIKKIVKLLLKF---GA   99 (494)
T ss_pred             CCCcccccCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC---CCCCcHHHHHhccCcchhhHHHHHHHHHHC---CC
Confidence            67777667799998776654  37999999999999997542   4589999998754      57899999999   99


Q ss_pred             CCccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc--CCHHHHHHHHHhcCCCCCcccC
Q 012618           74 NTDALNRYKQTPLMVAAMN---GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY--GHSDCLQALLTAARTSPVANTW  148 (460)
Q Consensus        74 ~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~~~~~~~~~~~  148 (460)
                      ++|.++..|.||||.|+..   ++.+++++|+++|+++.+..+..|+||||+|+..  ++.+++++|++.|++       
T Consensus       100 din~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad-------  172 (494)
T PHA02989        100 DINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN-------  172 (494)
T ss_pred             CCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-------
Confidence            9999999999999988765   6899999999999998667788999999998764  689999999999998       


Q ss_pred             CCcccccc-CCCCCCCHHHHHHHcC----CHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhc------CCHHHHHHH
Q 012618          149 GFSRFVNI-RDESGATPLHLAARQG----WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARG------GSLECIREL  217 (460)
Q Consensus       149 ~~~~~v~~-~d~~g~t~L~~A~~~g----~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~------g~~~~v~~L  217 (460)
                           ++. .+..|.||||+|+..+    +.+++++|+++|+++    +..+..+.||||.++..      +..+++++|
T Consensus       173 -----i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~v----n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l  243 (494)
T PHA02989        173 -----LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNI----ETNNNGSESVLESFLDNNKILSKKEFKVLNFI  243 (494)
T ss_pred             -----ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCc----cccCCccccHHHHHHHhchhhcccchHHHHHH
Confidence                 666 6789999999998764    899999999999944    55566788999987654      356778876


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhc
Q 012618          218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNE  296 (460)
Q Consensus       218 l~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~  296 (460)
                      +. |+++|.+|..|+||||+|+..++.+++++|+++|++++.          .+..|+|+|+.|+..++.+.++.+++.
T Consensus       244 ~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~----------~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        244 LK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYN----------VSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             Hh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccc----------cCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            65 699999999999999999999999999999999996654          456788999999999999999888864

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.3e-36  Score=249.97  Aligned_cols=196  Identities=29%  Similarity=0.262  Sum_probs=176.8

Q ss_pred             CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHc-CCccccCCCCCCChHHHHH
Q 012618           46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR-YKQTPLMVAAMNGKLSCVKKLIES-GAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A  123 (460)
                      +.++.+.+++..-..-|+.|++..+  ..++.++. +|+||||+||..|+.+++.+|++. +..+ +-+|..||||||+|
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~--kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~-ddkDdaGWtPlhia   79 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDP--KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP-DDKDDAGWTPLHIA   79 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcCh--hhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCC-CCccccCCchhhhh
Confidence            3577888888888888999998732  25566665 999999999999999999999964 4444 55678999999999


Q ss_pred             HHcCCHHHHHHHHHh-cCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHH
Q 012618          124 AYYGHSDCLQALLTA-ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL  202 (460)
Q Consensus       124 ~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpL  202 (460)
                      +..|+.++|+.|+.. +++            +|..+..|.|+||||+..|+.+++++|+++|+    .++.+|..|.|||
T Consensus        80 ~s~g~~evVk~Ll~r~~ad------------vna~tn~G~T~LHyAagK~r~eIaqlLle~ga----~i~~kD~~~qtpl  143 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGAD------------VNATTNGGQTCLHYAAGKGRLEIAQLLLEKGA----LIRIKDKQGQTPL  143 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCC------------cceecCCCcceehhhhcCChhhHHHHHHhcCC----CCcccccccCchh
Confidence            999999999999998 666            89999999999999999999999999999999    7788999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618          203 HFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVW  260 (460)
Q Consensus       203 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~  260 (460)
                      |.|+.-|+++++++|+..|+.+|..|+.|+||||.|+..++.+++.+|+.+||+....
T Consensus       144 HRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~e  201 (226)
T KOG4412|consen  144 HRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRE  201 (226)
T ss_pred             HHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeec
Confidence            9999999999999999999999999999999999999999999999999999976653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=4.7e-35  Score=294.22  Aligned_cols=245  Identities=26%  Similarity=0.340  Sum_probs=219.2

Q ss_pred             CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhc--cCCCCCCccC
Q 012618            2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ--FFLYTNTDAL   78 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~--~~~~~~~~~~   78 (460)
                      |.+++. ++.|.||||.|+..++.|..+.|++.|+++..  .+.+|++|+|.|+.+|..+..++++.+  +..+..+|..
T Consensus       144 ~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K--~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~  221 (929)
T KOG0510|consen  144 GADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCK--SDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFD  221 (929)
T ss_pred             cCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCc--ccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccc
Confidence            445565 45678899999999999999999999999854  456899999999999999999999982  1127889999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCcc--------------ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCC
Q 012618           79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFI--------------LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV  144 (460)
Q Consensus        79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~--------------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~  144 (460)
                      +..|.||||.|+..|++++++.+|+.|..+              ++..|.+|.||||+|++.|+.+.+..|+..|++   
T Consensus       222 ~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~---  298 (929)
T KOG0510|consen  222 NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS---  298 (929)
T ss_pred             cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc---
Confidence            999999999999999999999999998743              345678999999999999999999999999999   


Q ss_pred             cccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618          145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLD-NGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD  223 (460)
Q Consensus       145 ~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad  223 (460)
                               ++.++.++.||||.||..|+.++|+.||+ .|.   ...+..|..|.||||+|+++|+..++++||++||+
T Consensus       299 ---------I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~---rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~  366 (929)
T KOG0510|consen  299 ---------INSKNKDEESPLHFAAIYGRINTVERLLQESDT---RLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGAL  366 (929)
T ss_pred             ---------ccccCCCCCCchHHHHHcccHHHHHHHHhCcCc---cccccccccCCCchhhhhhcCHHHHHHHHHhcChh
Confidence                     89999999999999999999999999999 443   46778889999999999999999999999999999


Q ss_pred             CC---CCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCccccc
Q 012618          224 RV---QPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQ  263 (460)
Q Consensus       224 ~~---~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~  263 (460)
                      ..   ..|.+|.||||+|+.+|+..++++|+.+||+....+..
T Consensus       367 ~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~  409 (929)
T KOG0510|consen  367 FLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKK  409 (929)
T ss_pred             hhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccc
Confidence            87   56999999999999999999999999999987654433

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=311.58  Aligned_cols=270  Identities=23%  Similarity=0.276  Sum_probs=217.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHH---------------------------------
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAA---------------------------------   54 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~---------------------------------   54 (460)
                      ...+.||||+|+..|+.++|+.|++.+++.... .+..|.||||+|+                                 
T Consensus        38 ~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~-~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  116 (682)
T PHA02876         38 ESIPFTAIHQALQLRQIDIVEEIIQQNPELIYI-TDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHK  116 (682)
T ss_pred             ccccchHHHHHHHHHhhhHHHHHHHhCcccchh-hchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHH
Confidence            346899999999999999999999999986543 4567899999665                                 


Q ss_pred             -------------------------------------HcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHH
Q 012618           55 -------------------------------------AYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSC   97 (460)
Q Consensus        55 -------------------------------------~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~   97 (460)
                                                           ..|+.+++++|++.   |+++|.+|..|.||||+|+..|+.++
T Consensus       117 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~---Gadvn~~d~~G~TpLh~Aa~~G~~~i  193 (682)
T PHA02876        117 LDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEG---GADVNAKDIYCITPIHYAAERGNAKM  193 (682)
T ss_pred             HHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhC---CCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence                                                 45778999999999   99999999999999999999999999


Q ss_pred             HHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCccc-----------------CCCccccccCCCC
Q 012618           98 VKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANT-----------------WGFSRFVNIRDES  160 (460)
Q Consensus        98 v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~-----------------~~~~~~v~~~d~~  160 (460)
                      |++|++.|+++ +..+..|.||||+|+..++.+++++|++.+........                 ...+..++..|..
T Consensus       194 v~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~  272 (682)
T PHA02876        194 VNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDC  272 (682)
T ss_pred             HHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            99999999998 77778999999999999999999999887654321110                 0111236677888


Q ss_pred             CCCHHHHHHHcCCH-HHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618          161 GATPLHLAARQGWS-ECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG-SLECIRELLAWGADRVQPDAFGRIPYAIA  238 (460)
Q Consensus       161 g~t~L~~A~~~g~~-~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g-~~~~v~~Ll~~gad~~~~d~~G~tpL~~A  238 (460)
                      |.||||+|+..++. +++++|++.|+    +.+..|..|.||||+|+..| +.+++++|+..|++++..|..|.||||+|
T Consensus       273 g~TpLh~Aa~~~~~~~iv~lLl~~ga----din~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A  348 (682)
T PHA02876        273 KNTPLHHASQAPSLSRLVPKLLERGA----DVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA  348 (682)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHH
Confidence            88888888888876 58888888888    44566777888888888887 57888888888888888888888888888


Q ss_pred             HHh-ChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhc
Q 012618          239 LKY-KHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNE  296 (460)
Q Consensus       239 ~~~-~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~  296 (460)
                      +.. ++.+++++|++.|+++..          .+..++++|+.|+..++.+.++.+++.
T Consensus       349 ~~~~~~~~iv~lLl~~gadin~----------~d~~G~TpLh~Aa~~~~~~iv~~Ll~~  397 (682)
T PHA02876        349 STLDRNKDIVITLLELGANVNA----------RDYCDKTPIHYAAVRNNVVIINTLLDY  397 (682)
T ss_pred             HHhCCcHHHHHHHHHcCCCCcc----------CCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            775 467778888888775543          344567778888877777777777754

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.4e-34  Score=294.05  Aligned_cols=234  Identities=16%  Similarity=0.176  Sum_probs=206.3

Q ss_pred             CCCCcHHHHHHH--cCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHc-----CcHHHHHHHHhccCCCCCCccCCCC
Q 012618            9 ERSESALFVAVE--NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAY-----GQIEVLSMLLDQFFLYTNTDALNRY   81 (460)
Q Consensus         9 ~~g~t~L~~Aa~--~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~~~   81 (460)
                      ..+.|+++.+..  .++.++|++|+++|++++..  +..|.||||.|+.+     ++.+++++|+++   |+++|.+|..
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~---GadiN~~d~~  108 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGL--DNEYSTPLCTILSNIKDYKHMLDIVKILIEN---GADINKKNSD  108 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCC--CCCCCChHHHHHHhHHhHHhHHHHHHHHHHC---CCCCCCCCCC
Confidence            356677764554  45899999999999998654  46789999999865     679999999999   9999999999


Q ss_pred             CCcHHHHHHHcC---CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC---HHHHHHHHHhcCCCCCcccCCCccccc
Q 012618           82 KQTPLMVAAMNG---KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH---SDCLQALLTAARTSPVANTWGFSRFVN  155 (460)
Q Consensus        82 g~tpL~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~~v~  155 (460)
                      |.||||+|+.++   +.+++++|+++|+++ +..+..|.||||+|+..++   .+++++|++.|++            ++
T Consensus       109 G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad------------in  175 (489)
T PHA02798        109 GETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD------------IN  175 (489)
T ss_pred             cCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC------------cc
Confidence            999999999875   789999999999998 7888999999999999998   9999999999988            67


Q ss_pred             cCC-CCCCCHHHHHHHc----CCHHHHHHHHHcCCcccc-----------------------------------CCCCCC
Q 012618          156 IRD-ESGATPLHLAARQ----GWSECVHTLLDNGALACS-----------------------------------STGGNG  195 (460)
Q Consensus       156 ~~d-~~g~t~L~~A~~~----g~~~~v~~Ll~~ga~~~~-----------------------------------~~~~~d  195 (460)
                      ..+ ..|.||||.++..    ++.+++++|+++|++++.                                   +++.+|
T Consensus       176 ~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d  255 (489)
T PHA02798        176 THNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVD  255 (489)
T ss_pred             cccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcC
Confidence            664 5789999998765    478999999999986643                                   345577


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618          196 YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVW  260 (460)
Q Consensus       196 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~  260 (460)
                      ..|.||||+|+..|+.+++++|+++|||++.+|..|+|||++|+..++.++++.|+++++++...
T Consensus       256 ~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i  320 (489)
T PHA02798        256 ELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNTI  320 (489)
T ss_pred             cCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999987643

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-33  Score=290.85  Aligned_cols=232  Identities=15%  Similarity=0.134  Sum_probs=204.9

Q ss_pred             CCccccCCCCCcHHHHHHHcC------CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHc---CcHHHHHHHHhccCCC
Q 012618            2 GQRMSCRERSESALFVAVENG------DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAY---GQIEVLSMLLDQFFLY   72 (460)
Q Consensus         2 g~~~~~~~~g~t~L~~Aa~~g------~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~   72 (460)
                      |.+++....+.||||.|+.++      ..++|++|+++|++++..  +..|.||||.|+..   ++.+++++|+++   |
T Consensus        60 GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~--d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~---G  134 (494)
T PHA02989         60 GADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLK--TFNGVSPIVCFIYNSNINNCDMLRFLLSK---G  134 (494)
T ss_pred             CCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCC--CCCCCcHHHHHHHhcccCcHHHHHHHHHC---C
Confidence            667776667899999998764      478999999999998654  46799999998865   689999999999   9


Q ss_pred             CCC-ccCCCCCCcHHHHHHHc--CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC----CHHHHHHHHHhcCCCCCc
Q 012618           73 TNT-DALNRYKQTPLMVAAMN--GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG----HSDCLQALLTAARTSPVA  145 (460)
Q Consensus        73 ~~~-~~~~~~g~tpL~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g----~~~iv~~Ll~~~~~~~~~  145 (460)
                      +++ +..|..|+||||+|+..  ++.+++++|+++|+++....+..|.||||+|+..+    +.+++++|++.|++    
T Consensus       135 adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~----  210 (494)
T PHA02989        135 INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN----  210 (494)
T ss_pred             CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC----
Confidence            999 89999999999999764  68999999999999985546788999999998764    89999999999998    


Q ss_pred             ccCCCccccccCCCCCCCHHHHHHHcC------CHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHH
Q 012618          146 NTWGFSRFVNIRDESGATPLHLAARQG------WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA  219 (460)
Q Consensus       146 ~~~~~~~~v~~~d~~g~t~L~~A~~~g------~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~  219 (460)
                              ++.++..+.|+||.++..+      ..+++++|+. |+    +++.+|..|+||||+|+..|+.+++++|++
T Consensus       211 --------vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~a----dvn~~d~~G~TpL~~Aa~~~~~~~v~~LL~  277 (494)
T PHA02989        211 --------IETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YI----KINKKDKKGFNPLLISAKVDNYEAFNYLLK  277 (494)
T ss_pred             --------ccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CC----CCCCCCCCCCCHHHHHHHhcCHHHHHHHHH
Confidence                    8888999999999877643      4678887665 67    667788899999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618          220 WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA  255 (460)
Q Consensus       220 ~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga  255 (460)
                      +|+|++.+|..|+||||+|+..++.+++++|++.++
T Consensus       278 ~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        278 LGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            999999999999999999999999999999998875

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-33  Score=285.46  Aligned_cols=224  Identities=22%  Similarity=0.211  Sum_probs=203.5

Q ss_pred             CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618           46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY  125 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  125 (460)
                      .+++||.|+..|+.+++++|++.   |++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..+.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~   77 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVE   77 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHH
Confidence            35899999999999999999999   9999999999999999999999999999999999987 6666789999999999


Q ss_pred             cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618          126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA  205 (460)
Q Consensus       126 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A  205 (460)
                      .|+.+++++|++.+...           .+..+..|.||||+|+..|+.+++++|+++|+    +.+..+..|.||||+|
T Consensus        78 ~g~~~~v~~Ll~~~~~~-----------~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga----d~~~~~~~g~tpLh~A  142 (413)
T PHA02875         78 EGDVKAVEELLDLGKFA-----------DDVFYKDGMTPLHLATILKKLDIMKLLIARGA----DPDIPNTDKFSPLHLA  142 (413)
T ss_pred             CCCHHHHHHHHHcCCcc-----------cccccCCCCCHHHHHHHhCCHHHHHHHHhCCC----CCCCCCCCCCCHHHHH
Confidence            99999999999998763           35567789999999999999999999999999    5566778899999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh
Q 012618          206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES  285 (460)
Q Consensus       206 ~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~  285 (460)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++.....         ..+.++++.|+..+
T Consensus       143 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~---------~~~~t~l~~A~~~~  213 (413)
T PHA02875        143 VMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGK---------NGCVAALCYAIENN  213 (413)
T ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCC---------CCCchHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999998775321         12257899999999


Q ss_pred             hHHHHHHhhhcc
Q 012618          286 NEEREKAILNET  297 (460)
Q Consensus       286 ~~~~~~~ll~~~  297 (460)
                      ..+.++.+++..
T Consensus       214 ~~~iv~~Ll~~g  225 (413)
T PHA02875        214 KIDIVRLFIKRG  225 (413)
T ss_pred             CHHHHHHHHHCC
Confidence            999999998754

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=4.9e-34  Score=282.10  Aligned_cols=208  Identities=33%  Similarity=0.480  Sum_probs=192.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCC-CCCCcHHHHH
Q 012618           12 ESALFVAVENGDLQMIEAMVEA-DPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALN-RYKQTPLMVA   89 (460)
Q Consensus        12 ~t~L~~Aa~~g~~~~vk~Ll~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-~~g~tpL~~A   89 (460)
                      ...++.|++.|+++.|+.|++. +.+++.  .|.+|.|+||+|+.+++++++++|+++   |+++|... ..+.||||+|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~--~D~~g~tlLHWAAiNNrl~v~r~li~~---gadvn~~gG~l~stPLHWA  119 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNN--PDREGVTLLHWAAINNRLDVARYLISH---GADVNAIGGVLGSTPLHWA  119 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCC--CCcCCccceeHHHHcCcHHHHHHHHHc---CCCccccCCCCCCCcchHH
Confidence            3468899999999999999998 777644  356999999999999999999999999   99999998 7789999999


Q ss_pred             HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618           90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA  169 (460)
Q Consensus        90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~  169 (460)
                      +++|++.+|++|+++||++ +..|.+|.+|||+|+..|+.-+|-+|+.++++            +|.+|.+|+||||+|+
T Consensus       120 ar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d------------~d~~D~~grTpLmwAa  186 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD------------IDLRDNNGRTPLMWAA  186 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhccc------------CCCcCCCCCCHHHHHH
Confidence            9999999999999999999 88899999999999999999999999999987            8999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCccccCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Q 012618          170 RQGWSECVHTLLDNGALACSSTGGNG-YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKY  241 (460)
Q Consensus       170 ~~g~~~~v~~Ll~~ga~~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~  241 (460)
                      .+|....+..||+.|+    .....| ..|+||||+|+..|+..++.+|++.|++.+..|.+|.||+.+|.++
T Consensus       187 ykg~~~~v~~LL~f~a----~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  187 YKGFALFVRRLLKFGA----SLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HhcccHHHHHHHHhcc----cccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999988999999999    444444 8899999999999999999977888899999999999999999877

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.9e-33  Score=286.82  Aligned_cols=226  Identities=21%  Similarity=0.240  Sum_probs=195.7

Q ss_pred             CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHH------------------
Q 012618            2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVL------------------   62 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv------------------   62 (460)
                      |.+++. +..|.||||+|+..|+.+.+++|++.+.....    ..+.++|+.|+..++.+++                  
T Consensus        60 gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~  135 (477)
T PHA02878         60 GHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVY  135 (477)
T ss_pred             CCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHH
Confidence            556654 56899999999999999999999998765532    3457899999988876654                  


Q ss_pred             ---------------HHHHhccCCCCCCccCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618           63 ---------------SMLLDQFFLYTNTDALNRY-KQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY  126 (460)
Q Consensus        63 ---------------~~Ll~~~~~~~~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  126 (460)
                                     ++|++.   |++++..+.. |.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus       136 ~~~~~~~~~~~~~iv~~Ll~~---gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~  211 (477)
T PHA02878        136 IDKKSKDDIIEAEITKLLLSY---GADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKH  211 (477)
T ss_pred             HhhccchhhHHHHHHHHHHHc---CCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHh
Confidence                           455555   8889999988 999999999999999999999999998 77888999999999999


Q ss_pred             CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCccccCCCCCC-CCCChHHHH
Q 012618          127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ-GWSECVHTLLDNGALACSSTGGNG-YPGSTPLHF  204 (460)
Q Consensus       127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~d-~~g~TpLh~  204 (460)
                      |+.+++++|++.|++            ++.+|..|.||||+|+.. ++.+++++|+++|++++    ..+ ..|.||||+
T Consensus       212 ~~~~iv~~Ll~~ga~------------in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn----~~~~~~g~TpLh~  275 (477)
T PHA02878        212 YNKPIVHILLENGAS------------TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN----AKSYILGLTALHS  275 (477)
T ss_pred             CCHHHHHHHHHcCCC------------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC----ccCCCCCCCHHHH
Confidence            999999999999998            899999999999999976 78999999999999554    344 369999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC-hHHHHHhhCCC
Q 012618          205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK-HQACAALLNPS  253 (460)
Q Consensus       205 A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~-~~~i~~~Ll~~  253 (460)
                      |  .++.+++++|+++|+|++..|..|.||||+|+..+ ..+++++|+.+
T Consensus       276 A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~  323 (477)
T PHA02878        276 S--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN  323 (477)
T ss_pred             H--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHH
Confidence            9  56899999999999999999999999999999754 45677776554

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.6e-33  Score=290.59  Aligned_cols=262  Identities=16%  Similarity=0.214  Sum_probs=197.4

Q ss_pred             CCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC---------------------------
Q 012618            8 RERSESALFVAVEN---GDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG---------------------------   57 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~---g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g---------------------------   57 (460)
                      ++.|.||||+|+..   |+.++|++||+.|++++.  .+..|.||||+|+..|                           
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~--~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~  106 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLH--KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIF  106 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccc--cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchH
Confidence            66899999997655   889999999999999854  3567889999877654                           


Q ss_pred             --------cHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH--HcCCHHHHHHHHHcCCccccCCC---CCC--------
Q 012618           58 --------QIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA--MNGKLSCVKKLIESGAFILNFDS---LQG--------  116 (460)
Q Consensus        58 --------~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~--~~g~~~~v~~Ll~~g~~~~~~~~---~~g--------  116 (460)
                              +.++|++|+++   |+++|.+|..|.||||.|+  ..|+.+++++|+++|+++. ..+   ..|        
T Consensus       107 ~~~a~~~~~~e~vk~Ll~~---Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        107 SYMKSKNVDVDLIKVLVEH---GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL-YEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             HHHHhhcCCHHHHHHHHHc---CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc-ccccccccccccccccc
Confidence                    45667777777   9999999999999999654  4789999999999999883 222   233        


Q ss_pred             ---ChHHHHHHH-----------cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCH--------
Q 012618          117 ---RTCLHYAAY-----------YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS--------  174 (460)
Q Consensus       117 ---~t~L~~A~~-----------~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~--------  174 (460)
                         .||||+|+.           +++.+++++|++.|++            +|.+|.+|.||||+|+..|+.        
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad------------vn~~d~~G~TpLh~A~~~g~~~~eivk~L  250 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK------------PSSIDKNYCTALQYYIKSSHIDIDIVKLL  250 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC------------cccCCCCCCcHHHHHHHcCCCcHHHHHHH
Confidence               599999986           5689999999999998            666666666666666654431        


Q ss_pred             ---------------------------------------H----------------------------------------
Q 012618          175 ---------------------------------------E----------------------------------------  175 (460)
Q Consensus       175 ---------------------------------------~----------------------------------------  175 (460)
                                                             +                                        
T Consensus       251 i~g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (661)
T PHA02917        251 MKGIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDV  330 (661)
T ss_pred             HhCCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHH
Confidence                                                   2                                        


Q ss_pred             -----------------HHHHHHHcCCccccC--------------------------CCCCCCCCChHHHHHHhcC---
Q 012618          176 -----------------CVHTLLDNGALACSS--------------------------TGGNGYPGSTPLHFAARGG---  209 (460)
Q Consensus       176 -----------------~v~~Ll~~ga~~~~~--------------------------~~~~d~~g~TpLh~A~~~g---  209 (460)
                                       ++++|+++||+++..                          ....+..|.||||.|++.+   
T Consensus       331 ~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~  410 (661)
T PHA02917        331 LQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGC  410 (661)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccc
Confidence                             334444444432211                          1122334889999887543   


Q ss_pred             --------------------CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCC
Q 012618          210 --------------------SLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTD  269 (460)
Q Consensus       210 --------------------~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~  269 (460)
                                          ..+++++|+++|+|+|.+|..|+||||+|+..++.+++++|+++|+++..          
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~----------  480 (661)
T PHA02917        411 YNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNI----------  480 (661)
T ss_pred             hhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCC----------
Confidence                                35678999999999999999999999999999999999999999986543          


Q ss_pred             CCHHHHHHHHHHHh-hhhHHHHHHhhhcc
Q 012618          270 LNPEAKELLEKALM-ESNEEREKAILNET  297 (460)
Q Consensus       270 ~~~~~~~~L~~a~~-~~~~~~~~~ll~~~  297 (460)
                      .+..++++|+.|.. ..+.+..+.++...
T Consensus       481 ~d~~G~T~L~~A~~~~~~~~iv~~LL~~g  509 (661)
T PHA02917        481 RSNNGYTCIAIAINESRNIELLKMLLCHK  509 (661)
T ss_pred             CCCCCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence            55678889999986 56778888777543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.98  E-value=5.6e-31  Score=272.15  Aligned_cols=241  Identities=18%  Similarity=0.179  Sum_probs=205.4

Q ss_pred             CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHc--CcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc-----CCH
Q 012618           23 DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAY--GQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN-----GKL   95 (460)
Q Consensus        23 ~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~--g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~-----g~~   95 (460)
                      .++.|+.|++.+. ++..   ..+.|+++.+...  ++.++|++|+++   |+++|..+..|.||||.|+.+     ++.
T Consensus        17 ~~~~v~~ll~~~~-~~~~---~~~~~~~~~yl~~~~~~~~iv~~Ll~~---Gadvn~~d~~g~TpL~~~~~n~~~~~~~~   89 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNEI---VNEYSIFQKYLQRDSPSTDIVKLFINL---GANVNGLDNEYSTPLCTILSNIKDYKHML   89 (489)
T ss_pred             cHHHHHHHHhcCC-hhhh---cccchHHHHHHhCCCCCHHHHHHHHHC---CCCCCCCCCCCCChHHHHHHhHHhHHhHH
Confidence            5789999998653 3222   3466877755544  479999999999   999999999999999999864     678


Q ss_pred             HHHHHHHHcCCccccCCCCCCChHHHHHHHcC---CHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcC
Q 012618           96 SCVKKLIESGAFILNFDSLQGRTCLHYAAYYG---HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG  172 (460)
Q Consensus        96 ~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g  172 (460)
                      +++++|+++|+++ +..+..|+||||+|+..+   +.+++++|++.|++            ++.+|..|.||||+|+..+
T Consensus        90 ~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad------------vn~~d~~g~tpL~~a~~~~  156 (489)
T PHA02798         90 DIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD------------TTLLDKDGFTMLQVYLQSN  156 (489)
T ss_pred             HHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC------------ccccCCCCCcHHHHHHHcC
Confidence            9999999999998 788889999999999875   78999999999998            8999999999999999999


Q ss_pred             C---HHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhc----CCHHHHHHHHHcCCC----------------------
Q 012618          173 W---SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARG----GSLECIRELLAWGAD----------------------  223 (460)
Q Consensus       173 ~---~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~----g~~~~v~~Ll~~gad----------------------  223 (460)
                      +   .+++++|+++|++++...   +..|.||||.++..    ++.+++++|+++|++                      
T Consensus       157 ~~~~~~vv~~Ll~~gadin~~~---~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~  233 (489)
T PHA02798        157 HHIDIEIIKLLLEKGVDINTHN---NKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYD  233 (489)
T ss_pred             CcchHHHHHHHHHhCCCccccc---CcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhh
Confidence            8   999999999999554321   34688999988764    478999999888764                      


Q ss_pred             -----------------CCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhh
Q 012618          224 -----------------RVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESN  286 (460)
Q Consensus       224 -----------------~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~  286 (460)
                                       +|.+|..|+||||+|+.+++.+++++|+++||+++.          .+..|+|+|+.|+...+
T Consensus       234 ~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~----------~d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        234 NKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINI----------ITELGNTCLFTAFENES  303 (489)
T ss_pred             cccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccc----------cCCCCCcHHHHHHHcCc
Confidence                             445677899999999999999999999999997654          56678999999999999


Q ss_pred             HHHHHHhhhc
Q 012618          287 EEREKAILNE  296 (460)
Q Consensus       287 ~~~~~~ll~~  296 (460)
                      .+..+.+++.
T Consensus       304 ~~iv~~lL~~  313 (489)
T PHA02798        304 KFIFNSILNK  313 (489)
T ss_pred             HHHHHHHHcc
Confidence            9999988854

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=2.9e-31  Score=262.52  Aligned_cols=210  Identities=30%  Similarity=0.375  Sum_probs=188.6

Q ss_pred             ccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618           47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY  126 (460)
Q Consensus        47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  126 (460)
                      ..-++.|+++|.++.|+.|++..  +..++..|.+|.|+||+|+.+++++++++|+++|++++.....-+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~--g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE--GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc--CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            45688999999999999999974  8889999999999999999999999999999999999666557889999999999


Q ss_pred             CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHH
Q 012618          127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAA  206 (460)
Q Consensus       127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~  206 (460)
                      |+..+|.+|+++|++            ++.+|..|.+|||+|++.|+...|-+||.+|+    +.+.+|.+|+||||+|+
T Consensus       123 G~~~vv~lLlqhGAd------------pt~~D~~G~~~lHla~~~~~~~~vayll~~~~----d~d~~D~~grTpLmwAa  186 (600)
T KOG0509|consen  123 GHISVVDLLLQHGAD------------PTLKDKQGLTPLHLAAQFGHTALVAYLLSKGA----DIDLRDNNGRTPLMWAA  186 (600)
T ss_pred             CcHHHHHHHHHcCCC------------CceecCCCCcHHHHHHHhCchHHHHHHHHhcc----cCCCcCCCCCCHHHHHH
Confidence            999999999999999            79999999999999999999999999999998    77888999999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhh
Q 012618          207 RGGSLECIRELLAWGADRVQPD-AFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALME  284 (460)
Q Consensus       207 ~~g~~~~v~~Ll~~gad~~~~d-~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~  284 (460)
                      ..|+...++.||+.|+.++..| ..|.||||+|+..|+..++.+|++.|++...          .+..|++++.-|...
T Consensus       187 ykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~----------~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  187 YKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDK----------TNTNGKTPFDLAQER  255 (600)
T ss_pred             HhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccc----------cccCCCCHHHHHHHh
Confidence            9999998999999999999998 8999999999999999999977777764433          333356666555443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=8e-32  Score=286.93  Aligned_cols=262  Identities=31%  Similarity=0.369  Sum_probs=213.4

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcH
Q 012618            6 SCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTP   85 (460)
Q Consensus         6 ~~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tp   85 (460)
                      ...+++.++++.|+..|.+++++.++..|.+++..  ...|.||||.|+.+++..+|++++++   +++++..+..|+||
T Consensus       369 ~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~--gk~gvTplh~aa~~~~~~~v~l~l~~---gA~~~~~~~lG~T~  443 (1143)
T KOG4177|consen  369 QAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSA--GKNGVTPLHVAAHYGNPRVVKLLLKR---GASPNAKAKLGYTP  443 (1143)
T ss_pred             cccccCCcchhhhcccCchhHHHhhhhccCCcccC--CCCCcceeeehhhccCcceEEEEecc---CCChhhHhhcCCCh
Confidence            34678999999999999999999999999996544  45789999999999999999999998   99999999999999


Q ss_pred             HHHHHHcC-CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618           86 LMVAAMNG-KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP  164 (460)
Q Consensus        86 L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~  164 (460)
                      +|+|+..| ..++...++..|.++ +.....|.||||+|+..|+.+++..|++.++.            ++.....+.++
T Consensus       444 lhvaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~------------~~~~~~~~l~~  510 (1143)
T KOG4177|consen  444 LHVAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAN------------DNLDAKKGLTP  510 (1143)
T ss_pred             hhhhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCc------------cCccchhccch
Confidence            99999999 888999999999988 77778999999999999999999999998866            56666777777


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH
Q 012618          165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ  244 (460)
Q Consensus       165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~  244 (460)
                      ||.|...+...+++.++++|+    ..+.++..|.||||.|+..|+.++|++||++|+|++.+++.|+||||.|+..|+.
T Consensus       511 lhla~~~~~v~~~~~l~~~ga----~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~  586 (1143)
T KOG4177|consen  511 LHLAADEDTVKVAKILLEHGA----NVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHN  586 (1143)
T ss_pred             hhhhhhhhhHHHHHHHhhcCC----ceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChH
Confidence            777777777777777777777    4455556677788888877888888888888888777777778888888777777


Q ss_pred             HHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcccc
Q 012618          245 ACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETIC  299 (460)
Q Consensus       245 ~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~~  299 (460)
                      +|+.+|+++||+++.          .+.++.|+|..|...+....++.++.....
T Consensus       587 ~i~~LLlk~GA~vna----------~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  587 DIAELLLKHGASVNA----------ADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHHHHHHHcCCCCCc----------ccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            778888777774443          455677777777777777777777655443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=260.24  Aligned_cols=170  Identities=18%  Similarity=0.158  Sum_probs=137.0

Q ss_pred             CCCCCcHHHHHHHcC---CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC--cHHHHHHHHhccCCCCCC--ccCCC
Q 012618            8 RERSESALFVAVENG---DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG--QIEVLSMLLDQFFLYTNT--DALNR   80 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g---~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~--~~~~~   80 (460)
                      +..|.||||+|+..|   +.++|++||++|++++.  .+..|.||||+|+..+  +.++|++|++.   |+++  +..+.
T Consensus        38 d~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~--kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~---~~~~~~~~~~~  112 (672)
T PHA02730         38 DRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLC--RNNEGLTPLGVYSKRKYVKSQIVHLLISS---YSNASNELTSN  112 (672)
T ss_pred             CCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcc--cCCCCCChHHHHHHcCCCcHHHHHHHHhc---CCCCCcccccc
Confidence            567999999999997   59999999999999964  4678999999999977  79999999998   6644  66777


Q ss_pred             CCCcHHHHHHH--cCCHHHHHHHHH-cCCccccCCC----CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCc----c---
Q 012618           81 YKQTPLMVAAM--NGKLSCVKKLIE-SGAFILNFDS----LQGRTCLHYAAYYGHSDCLQALLTAARTSPVA----N---  146 (460)
Q Consensus        81 ~g~tpL~~A~~--~g~~~~v~~Ll~-~g~~~~~~~~----~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~----~---  146 (460)
                      .+.+|||.++.  +++.++|++|+. .++++....+    ..|.+|+++|...++.++|++|++.|++...-    .   
T Consensus       113 ~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~  192 (672)
T PHA02730        113 INDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYD  192 (672)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccccccc
Confidence            78899998888  889999999996 5566533322    37889999999999999999999998876200    0   


Q ss_pred             -cC---------------------------CCccccccCCCCCCCHHHH--HHHcCCHHHHHHHHH
Q 012618          147 -TW---------------------------GFSRFVNIRDESGATPLHL--AARQGWSECVHTLLD  182 (460)
Q Consensus       147 -~~---------------------------~~~~~v~~~d~~g~t~L~~--A~~~g~~~~v~~Ll~  182 (460)
                       ..                           ..+..+|.+|..|.||||+  |...++.|+|++|++
T Consensus       193 ~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        193 SDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             CCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence             00                           1223489999999999996  445567999999999

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=232.43  Aligned_cols=176  Identities=18%  Similarity=0.167  Sum_probs=155.1

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCccccCCCCCCChHHHH
Q 012618           45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG--KLSCVKKLIESGAFILNFDSLQGRTCLHY  122 (460)
Q Consensus        45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  122 (460)
                      .+.||||+|+..|+.++|+.|++.      ++..|..|.||||+|+..+  +.+++++|++.|+++....+..|+||||+
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            457999999999999999999975      4567888999999999864  89999999999999944434589999999


Q ss_pred             HHHc---CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH--cCCHHHHHHHHHcCCccccCCCCCCCC
Q 012618          123 AAYY---GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR--QGWSECVHTLLDNGALACSSTGGNGYP  197 (460)
Q Consensus       123 A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~ga~~~~~~~~~d~~  197 (460)
                      |+..   ++.+++++|++.|++            +|.+|..|.||||+|+.  .++.+++++|+++|+    +++.+|..
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gad------------in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga----din~~d~~  157 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSS------------ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV----SFLNKDFD  157 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCC------------CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC----CcccccCC
Confidence            8764   479999999999998            89999999999999986  468999999999999    55667889


Q ss_pred             CChHHHH-HHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 012618          198 GSTPLHF-AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK  242 (460)
Q Consensus       198 g~TpLh~-A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~  242 (460)
                      |.||||. |+..++.+++++|+++|++++.+|..|+|||++|..++
T Consensus       158 g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        158 NNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999995 56788999999999999999999999999999998764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=2.7e-29  Score=264.54  Aligned_cols=213  Identities=18%  Similarity=0.138  Sum_probs=178.1

Q ss_pred             HHHHHHHHHcCCCcccccCCCCCccHHHHHHHc---CcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHH----
Q 012618           24 LQMIEAMVEADPTVLGMTSGYGKQSALHLAAAY---GQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLS----   96 (460)
Q Consensus        24 ~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~----   96 (460)
                      ++.|+.|+..+....  ..+.+|+||||+|+..   |+.++|++||+.   |++++..+..|.||||+|+..|+.+    
T Consensus        12 ~~~~~~l~~~~~~~~--~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~---ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~   86 (661)
T PHA02917         12 LDELKQMLRDRDPND--TRNQFKNNALHAYLFNEHCNNVEVVKLLLDS---GTNPLHKNWRQLTPLEEYTNSRHVKVNKD   86 (661)
T ss_pred             HHHHHHHHhccCccc--ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC---CCCccccCCCCCCHHHHHHHcCChhHHHH
Confidence            578899998777663  3367899999998655   889999999999   9999999999999999999999854    


Q ss_pred             HHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH--HcCCH
Q 012618           97 CVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA--RQGWS  174 (460)
Q Consensus        97 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~--~~g~~  174 (460)
                      ++++|++.+... +..+  ..++++.|+..++.++|++|++.|++            +|..|..|.||||+|+  ..|+.
T Consensus        87 ~~~~Ll~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gad------------in~~d~~g~T~L~~~~a~~~~~~  151 (661)
T PHA02917         87 IAMALLEATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEHGFD------------LSVKCENHRSVIENYVMTDDPVP  151 (661)
T ss_pred             HHHHHHhccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHcCCC------------CCccCCCCccHHHHHHHccCCCH
Confidence            567888875432 3333  34778889999999999999999999            8999999999999654  57899


Q ss_pred             HHHHHHHHcCCccccCCCCCCC-----------CCChHHHHHHh-----------cCCHHHHHHHHHcCCCCCCCCCCCC
Q 012618          175 ECVHTLLDNGALACSSTGGNGY-----------PGSTPLHFAAR-----------GGSLECIRELLAWGADRVQPDAFGR  232 (460)
Q Consensus       175 ~~v~~Ll~~ga~~~~~~~~~d~-----------~g~TpLh~A~~-----------~g~~~~v~~Ll~~gad~~~~d~~G~  232 (460)
                      +++++|+++|++++.. +..+.           .+.||||+|+.           .++.++|++|+++|+|+|.+|.+|.
T Consensus       152 eivklLi~~Ga~vn~~-d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~  230 (661)
T PHA02917        152 EIIDLFIENGCSVLYE-DEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYC  230 (661)
T ss_pred             HHHHHHHHcCCCcccc-ccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCC
Confidence            9999999999977532 11222           33699999986           4689999999999999999999999


Q ss_pred             CHHHHHHHhChH--HHHHhhCCCCCCCC
Q 012618          233 IPYAIALKYKHQ--ACAALLNPSSAEPL  258 (460)
Q Consensus       233 tpL~~A~~~~~~--~i~~~Ll~~ga~~~  258 (460)
                      ||||+|+..++.  +++++|++ |++..
T Consensus       231 TpLh~A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        231 TALQYYIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             cHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence            999999999985  79999975 77554

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=7e-29  Score=255.40  Aligned_cols=255  Identities=17%  Similarity=0.125  Sum_probs=195.2

Q ss_pred             CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC---cHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcC--CHHH
Q 012618           23 DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG---QIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG--KLSC   97 (460)
Q Consensus        23 ~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~   97 (460)
                      ....+++.++.-++++. ..+.+|+||||+|+.+|   +.++|++||++   |++++.+|..|+||||+|+..+  +.++
T Consensus        19 ~~~~~~~~~~~~~~in~-~kd~~G~TaLh~A~~~~~~~~~eivklLLs~---GAdin~kD~~G~TPLh~Aa~~~~~~~eI   94 (672)
T PHA02730         19 TYKKIKLEIETCHNLSK-HIDRRGNNALHCYVSNKCDTDIKIVRLLLSR---GVERLCRNNEGLTPLGVYSKRKYVKSQI   94 (672)
T ss_pred             hHHHHHHHHHHhcchhh-hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC---CCCCcccCCCCCChHHHHHHcCCCcHHH
Confidence            35678888988878763 34568999999999997   59999999999   9999999999999999999976  7999


Q ss_pred             HHHHHHcCCcc-ccCCCCCCChHHHHHHH--cCCHHHHHHHHHhc-CCCCCccc-----CC-------------------
Q 012618           98 VKKLIESGAFI-LNFDSLQGRTCLHYAAY--YGHSDCLQALLTAA-RTSPVANT-----WG-------------------  149 (460)
Q Consensus        98 v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~--~g~~~iv~~Ll~~~-~~~~~~~~-----~~-------------------  149 (460)
                      |++|++.|++. .+..+.-+.+|||.++.  .++.++|++|+..+ .++.....     .+                   
T Consensus        95 v~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklL  174 (672)
T PHA02730         95 VHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWL  174 (672)
T ss_pred             HHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHH
Confidence            99999997643 13355568899999988  89999999999733 33222210     11                   


Q ss_pred             --Cccccc-------cCCCCC-CCHHHHHH------HcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHH--HHhcCCH
Q 012618          150 --FSRFVN-------IRDESG-ATPLHLAA------RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF--AARGGSL  211 (460)
Q Consensus       150 --~~~~v~-------~~d~~g-~t~L~~A~------~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~--A~~~g~~  211 (460)
                        .+..++       ..+..+ .|.||+++      .++..+++++|+++||    +++.+|..|.||||+  |...++.
T Consensus       175 i~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Ga----dIN~kd~~G~TpLh~~~~~~~~~~  250 (672)
T PHA02730        175 LKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNV----SIHGRDEGGSLPIQYYWSCSTIDI  250 (672)
T ss_pred             HHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCcccH
Confidence              111121       123333 35566443      4578899999999999    667788999999995  5566789


Q ss_pred             HHHHHHHH--------------------------------cCCCCCC--------------------CCCCCCC------
Q 012618          212 ECIRELLA--------------------------------WGADRVQ--------------------PDAFGRI------  233 (460)
Q Consensus       212 ~~v~~Ll~--------------------------------~gad~~~--------------------~d~~G~t------  233 (460)
                      ++|++|++                                +|+|...                    .|..|.+      
T Consensus       251 eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~  330 (672)
T PHA02730        251 EIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDN  330 (672)
T ss_pred             HHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHH
Confidence            99999999                                7998866                    5666755      


Q ss_pred             ---------------HHHHHHHhC---hHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhh----HHHHH
Q 012618          234 ---------------PYAIALKYK---HQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESN----EEREK  291 (460)
Q Consensus       234 ---------------pL~~A~~~~---~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~----~~~~~  291 (460)
                                     .|+.-+..+   +.+++++|+++||+++.          . ..+.|+|+.|+...+    .+.++
T Consensus       331 i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~----------k-~~G~TpLH~Aa~~nnn~i~~eIve  399 (672)
T PHA02730        331 ILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDK----------T-TDNNYPLHDYFVNNNNIVDVNVVR  399 (672)
T ss_pred             HHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc----------C-CCCCcHHHHHHHHcCCcchHHHHH
Confidence                           667667755   58999999999997762          1 357899998887764    78898


Q ss_pred             Hhhhc
Q 012618          292 AILNE  296 (460)
Q Consensus       292 ~ll~~  296 (460)
                      .++..
T Consensus       400 lLIs~  404 (672)
T PHA02730        400 FIVEN  404 (672)
T ss_pred             HHHHc
Confidence            88864

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=7.6e-30  Score=242.54  Aligned_cols=217  Identities=26%  Similarity=0.349  Sum_probs=180.6

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCc---ccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCcc--------CCCCCCc
Q 012618           16 FVAVENGDLQMIEAMVEADPTV---LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA--------LNRYKQT   84 (460)
Q Consensus        16 ~~Aa~~g~~~~vk~Ll~~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------~~~~g~t   84 (460)
                      .-|++.|.+..+..|+-...+.   .-.....+|.|||.+|+++|+.++|++|++++  ++++..        ....|-+
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~--~a~~e~~GsV~FDge~Iegap   86 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHC--RASPEQGGSVRFDGETIEGAP   86 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHh--cCCccCCceEEeCCcccCCCc
Confidence            3688888888888888764421   11112356779999999999999999999964  444432        3356788


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618           85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP  164 (460)
Q Consensus        85 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~  164 (460)
                      ||..|+..||+++|+.|+++|+++ +.......|||-.|+.-|+.++|++|++++++            ++..|..|.|.
T Consensus        87 pLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~gad------------~~IanrhGhTc  153 (615)
T KOG0508|consen   87 PLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEHGAD------------PEIANRHGHTC  153 (615)
T ss_pred             hhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHcCCC------------CcccccCCCee
Confidence            999999999999999999999888 54555677999999999999999999999998            78889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH
Q 012618          165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ  244 (460)
Q Consensus       165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~  244 (460)
                      ||+|+..|+.+++++|++.|+    +++.++..|+|+||.|+..|+++++++|+++|+-+. +|..|.|||..|...|+.
T Consensus       154 LmIa~ykGh~~I~qyLle~gA----Dvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~  228 (615)
T KOG0508|consen  154 LMIACYKGHVDIAQYLLEQGA----DVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHT  228 (615)
T ss_pred             EEeeeccCchHHHHHHHHhCC----CcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcch
Confidence            999999999999999999999    566777889999999999999999999999998875 466699999999999999


Q ss_pred             HHHHhhCC
Q 012618          245 ACAALLNP  252 (460)
Q Consensus       245 ~i~~~Ll~  252 (460)
                      +++++|+.
T Consensus       229 ~iVe~L~~  236 (615)
T KOG0508|consen  229 DIVERLLQ  236 (615)
T ss_pred             HHHHHHhc
Confidence            99999985

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=4.8e-30  Score=243.92  Aligned_cols=193  Identities=32%  Similarity=0.414  Sum_probs=174.6

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCc------ccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccC
Q 012618            6 SCRERSESALFVAVENGDLQMIEAMVEA-DPTV------LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDAL   78 (460)
Q Consensus         6 ~~~~~g~t~L~~Aa~~g~~~~vk~Ll~~-~~~~------~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~   78 (460)
                      +...+|.|||.+||++|+.++|++|+++ ++++      .......+|-+||..|+..||+++|+.|+++   |+++|..
T Consensus        37 ~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~---ga~VN~t  113 (615)
T KOG0508|consen   37 GEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR---GASVNDT  113 (615)
T ss_pred             ccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh---cCccccc
Confidence            4456788999999999999999999994 3332      1112235688999999999999999999999   9999998


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618           79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD  158 (460)
Q Consensus        79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d  158 (460)
                      .....|||-.||.-|+.++|++|+++|+++ +..|..|.|+||+|++.|+.+|+++|++.|++            +|.++
T Consensus       114 T~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD------------vn~ks  180 (615)
T KOG0508|consen  114 TRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGAD------------VNAKS  180 (615)
T ss_pred             cccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCCC------------cchhc
Confidence            888889999999999999999999999999 89999999999999999999999999999999            99999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHH
Q 012618          159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA  219 (460)
Q Consensus       159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~  219 (460)
                      ..|+|+||.++..|+.+++++|+.+|+.+.     .|..|.|||..|+..|+.++|++|+.
T Consensus       181 ~kGNTALH~caEsG~vdivq~Ll~~ga~i~-----~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  181 YKGNTALHDCAESGSVDIVQLLLKHGAKID-----VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             ccCchHHHhhhhcccHHHHHHHHhCCceee-----ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999999999999999999998442     34569999999999999999999996

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=7.3e-29  Score=244.21  Aligned_cols=211  Identities=14%  Similarity=0.022  Sum_probs=182.7

Q ss_pred             HHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCc------cCCCCCCcHHHHHHH--cCCHHH
Q 012618           26 MIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTD------ALNRYKQTPLMVAAM--NGKLSC   97 (460)
Q Consensus        26 ~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~------~~~~~g~tpL~~A~~--~g~~~~   97 (460)
                      +-++++.+|++++....  +|     +|+..+..|++++|+.+   |++++      .++..++|+||.|+.  .|+.++
T Consensus        64 ~~~~~~~~~~~i~~~~~--~~-----~~~~~~~k~~~~~l~s~---~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~ei  133 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIV--DR-----LFAYITYKDIISALVSK---NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDI  133 (437)
T ss_pred             HHHHHHHcCcchhhhhh--hh-----HHhhcchHHHHHHHHhc---ccccchhhhhhhccccccHHHHHHHHhcCCCHHH
Confidence            34788889998866543  33     89999999999999999   99988      778889999999999  899999


Q ss_pred             HHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHH
Q 012618           98 VKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECV  177 (460)
Q Consensus        98 v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v  177 (460)
                      |++|+++|+++ +..  .+.||||.|+..++.+++++|+++|+......      ..+..+..+.|++|.|+..++.+++
T Consensus       134 V~~LI~~GADI-n~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~------~~~l~~~~~~t~l~~a~~~~~~eIv  204 (437)
T PHA02795        134 VDFMVDHGAVI-YKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDV------KLDLYKIIQYTRGFLVDEPTVLEIY  204 (437)
T ss_pred             HHHHHHCCCCC-CCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccc------cchhhhhhccchhHHHHhcCHHHHH
Confidence            99999999998 443  46899999999999999999999997531100      0222335688999999999999999


Q ss_pred             HHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC--------hHHHHHh
Q 012618          178 HTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK--------HQACAAL  249 (460)
Q Consensus       178 ~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~--------~~~i~~~  249 (460)
                      ++|+++|+    +.+.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|        +.+++++
T Consensus       205 e~LIs~GA----DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvel  280 (437)
T PHA02795        205 KLCIPYIE----DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEI  280 (437)
T ss_pred             HHHHhCcC----CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHH
Confidence            99999999    55677889999999999999999999999999999999999999999999988        4699999


Q ss_pred             hCCCCCCCCc
Q 012618          250 LNPSSAEPLV  259 (460)
Q Consensus       250 Ll~~ga~~~~  259 (460)
                      |+++|++...
T Consensus       281 LL~~gadI~~  290 (437)
T PHA02795        281 LLREPLSIDC  290 (437)
T ss_pred             HHhCCCCCCc
Confidence            9999997664

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=1.1e-29  Score=270.73  Aligned_cols=228  Identities=30%  Similarity=0.388  Sum_probs=215.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC-cHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG-QIEVLSMLLDQFFLYTNTDALNRYKQTPL   86 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL   86 (460)
                      +..|.||||.|+..++..+|+.+++++++.+..  +..|.||+|+|+..| ..++...+++.   +.++|.....|+|||
T Consensus       404 gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~--~~lG~T~lhvaa~~g~~~~~~~~l~~~---g~~~n~~s~~G~T~L  478 (1143)
T KOG4177|consen  404 GKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAK--AKLGYTPLHVAAKKGRYLQIARLLLQY---GADPNAVSKQGFTPL  478 (1143)
T ss_pred             CCCCcceeeehhhccCcceEEEEeccCCChhhH--hhcCCChhhhhhhcccHhhhhhhHhhc---CCCcchhccccCcch
Confidence            457899999999999999999999999998665  457899999999999 88999999998   999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHH
Q 012618           87 MVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH  166 (460)
Q Consensus        87 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~  166 (460)
                      |+|+..|+.++++.|++.++.. +.....+.++||.|...+...+++.+++.+++            ++.++.+|+||||
T Consensus       479 hlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~------------v~~~~~r~~TpLh  545 (1143)
T KOG4177|consen  479 HLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAADEDTVKVAKILLEHGAN------------VDLRTGRGYTPLH  545 (1143)
T ss_pred             hhhhccCCchHHHHhhhcCCcc-CccchhccchhhhhhhhhhHHHHHHHhhcCCc------------eehhcccccchHH
Confidence            9999999999999999999776 66677899999999999999999999999998            8999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHH
Q 012618          167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC  246 (460)
Q Consensus       167 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i  246 (460)
                      +|+..|+..+|++||++|+    +.+.++..|+||||.|+..|+.+++++|+++||++|..|.+|.|||++|+..++.++
T Consensus       546 ~A~~~g~v~~VkfLLe~gA----dv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~  621 (1143)
T KOG4177|consen  546 VAVHYGNVDLVKFLLEHGA----DVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSV  621 (1143)
T ss_pred             HHHhcCCchHHHHhhhCCc----cccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccch
Confidence            9999999999999999999    556677899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCCC
Q 012618          247 AALLNPSSAEP  257 (460)
Q Consensus       247 ~~~Ll~~ga~~  257 (460)
                      +++|...++++
T Consensus       622 ~k~l~~~~~~~  632 (1143)
T KOG4177|consen  622 VKLLKVVTATP  632 (1143)
T ss_pred             hhHHHhccCcc
Confidence            99999999984

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.7e-28  Score=221.60  Aligned_cols=177  Identities=14%  Similarity=0.106  Sum_probs=155.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcC--cHHHHHHHHhccCCCCCCccCC-CCCCc
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYG--QIEVLSMLLDQFFLYTNTDALN-RYKQT   84 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~-~~g~t   84 (460)
                      .+.+.+||++|+..|+.++|+.|++....     .+..|.||||+|+.++  +.+++++|++.   |++++.++ ..|.|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~n~-----~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~---gadvn~~~~~~g~T   89 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFVND-----CNDLYETPIFSCLEKDKVNVEILKFLIEN---GADVNFKTRDNNLS   89 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhhhc-----cCccCCCHHHHHHHcCCCCHHHHHHHHHC---CCCCCccCCCCCCC
Confidence            35678999999999999999999986322     2457899999999865  89999999999   99999997 58999


Q ss_pred             HHHHHHHc---CCHHHHHHHHHcCCccccCCCCCCChHHHHHHH--cCCHHHHHHHHHhcCCCCCcccCCCccccccCCC
Q 012618           85 PLMVAAMN---GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY--YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE  159 (460)
Q Consensus        85 pL~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~  159 (460)
                      |||+|+..   ++.+++++|+++|+++ +..+..|.||||+|+.  .++.+++++|++.|++            ++.+|.
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad------------in~~d~  156 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS------------FLNKDF  156 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC------------cccccC
Confidence            99998764   4799999999999998 7788999999999986  4689999999999988            899999


Q ss_pred             CCCCHHHH-HHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcC
Q 012618          160 SGATPLHL-AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG  209 (460)
Q Consensus       160 ~g~t~L~~-A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g  209 (460)
                      .|.||||. |+..++.+++++|+++|+    +++.+|..|.||||+|+.++
T Consensus       157 ~g~t~Lh~~a~~~~~~~iv~~Ll~~Ga----di~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        157 DNNNILYSYILFHSDKKIFDFLTSLGI----DINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCCcHHHHHHHhcCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHhhhh
Confidence            99999996 567889999999999999    55677889999999998754

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=6.1e-28  Score=245.93  Aligned_cols=255  Identities=13%  Similarity=0.118  Sum_probs=201.8

Q ss_pred             CCCCcHHHH-HHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHH-cCcHHHHHHHHhccCCCCCC-----------
Q 012618            9 ERSESALFV-AVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAA-YGQIEVLSMLLDQFFLYTNT-----------   75 (460)
Q Consensus         9 ~~g~t~L~~-Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~-~g~~~iv~~Ll~~~~~~~~~-----------   75 (460)
                      -.|.+++++ |..+|++|+|++|+++|++++..  +.++.||||+|+. .++.|++++||++   |+++           
T Consensus        69 ~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~--~n~~~~~l~ya~~~~~~~eivk~Ll~~---Gad~~~~~~~g~~~~  143 (631)
T PHA02792         69 INDFDIFEYLCSDNIDIELLKLLISKGLEINSI--KNGINIVEKYATTSNPNVDVFKLLLDK---GIPTCSNIQYGYKII  143 (631)
T ss_pred             cCCccHHHHHHHhcccHHHHHHHHHcCCCcccc--cCCCCcceeEeecCCCChHHHHHHHHC---CCCcccccccCcchh
Confidence            357778865 56789999999999999999755  3468899999966 6999999999999   6652           


Q ss_pred             -------------------------ccCCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618           76 -------------------------DALNRYKQTPLMVAAMNG-------KLSCVKKLIESGAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        76 -------------------------~~~~~~g~tpL~~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  123 (460)
                                               |..+..|.||||+|+.++       +.++++.|+++|+++ +..|..|.||||+|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~  222 (631)
T PHA02792        144 IEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYY  222 (631)
T ss_pred             hhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHH
Confidence                                     244567999999999999       899999999999999 66677899999999


Q ss_pred             HHcC--CHHHHHHHHHhcCCCC--------------------Cc--------------------ccCCCc----------
Q 012618          124 AYYG--HSDCLQALLTAARTSP--------------------VA--------------------NTWGFS----------  151 (460)
Q Consensus       124 ~~~g--~~~iv~~Ll~~~~~~~--------------------~~--------------------~~~~~~----------  151 (460)
                      +...  ..+++++|+.....-.                    +.                    ..+...          
T Consensus       223 ~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~  302 (631)
T PHA02792        223 VDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRY  302 (631)
T ss_pred             HHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHH
Confidence            9999  7899999987532100                    00                    000000          


Q ss_pred             ---------------------------cccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCC--CChHH
Q 012618          152 ---------------------------RFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP--GSTPL  202 (460)
Q Consensus       152 ---------------------------~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~--g~TpL  202 (460)
                                                 .-.+........+++.|+..|+.++|++|+++||++    +.+|..  +.|||
T Consensus       303 ~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI----N~kD~~g~~~TpL  378 (631)
T PHA02792        303 TDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV----VEDDDNIINIMPL  378 (631)
T ss_pred             hHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch----hhhcCCCCChhHH
Confidence                                       001111223566789999999999999999999955    444444  46999


Q ss_pred             HHHHhcCCH---HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHH
Q 012618          203 HFAARGGSL---ECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLE  279 (460)
Q Consensus       203 h~A~~~g~~---~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~  279 (460)
                      |+|......   +++++|+++|||+|.+|..|+||||+|+..++.+++++|+++|++++.          .+..++++|+
T Consensus       379 h~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~----------kD~~G~TpL~  448 (631)
T PHA02792        379 FPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI----------TTKYGSTCIG  448 (631)
T ss_pred             HHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----------cCCCCCCHHH
Confidence            998877665   468999999999999999999999999999999999999999996554          5667788888


Q ss_pred             HHHh
Q 012618          280 KALM  283 (460)
Q Consensus       280 ~a~~  283 (460)
                      .|..
T Consensus       449 ~A~~  452 (631)
T PHA02792        449 ICVI  452 (631)
T ss_pred             HHHH
Confidence            8865

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.2e-27  Score=243.73  Aligned_cols=235  Identities=12%  Similarity=0.065  Sum_probs=190.8

Q ss_pred             CCcccc-CCCCCcHHHHHHH-cCCHHHHHHHHHcCCCccc--c--------------------------------cCCCC
Q 012618            2 GQRMSC-RERSESALFVAVE-NGDLQMIEAMVEADPTVLG--M--------------------------------TSGYG   45 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~Aa~-~g~~~~vk~Ll~~~~~~~~--~--------------------------------~~~~~   45 (460)
                      |++++. +..+.++|++|+. .|+.|+|++||++|++...  .                                ..+..
T Consensus        95 GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (631)
T PHA02792         95 GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRM  174 (631)
T ss_pred             CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCC
Confidence            566654 4567889899966 6999999999999986311  0                                12335


Q ss_pred             CccHHHHHHHcC-------cHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHc------------
Q 012618           46 KQSALHLAAAYG-------QIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG--KLSCVKKLIES------------  104 (460)
Q Consensus        46 g~t~Lh~A~~~g-------~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g--~~~~v~~Ll~~------------  104 (460)
                      |.||||+|+.++       +.++++.||.+   |++++.+|..|.||||+|+.+.  ..|++++|++.            
T Consensus       175 g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~---g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~  251 (631)
T PHA02792        175 GKTVLYYYIITRSQDGYATSLDVINYLISH---EKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILS  251 (631)
T ss_pred             CCchHHHHHhhCCcccccCCHHHHHHHHhC---CCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHH
Confidence            899999999999       89999999999   9999999999999999999887  55666655542            


Q ss_pred             -------------------------------------------------------------------------------C
Q 012618          105 -------------------------------------------------------------------------------G  105 (460)
Q Consensus       105 -------------------------------------------------------------------------------g  105 (460)
                                                                                                     |
T Consensus       252 ~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~G  331 (631)
T PHA02792        252 NYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEG  331 (631)
T ss_pred             HHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCC
Confidence                                                                                           2


Q ss_pred             CccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC--CCHHHHHHHcCCH---HHHHHH
Q 012618          106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG--ATPLHLAARQGWS---ECVHTL  180 (460)
Q Consensus       106 ~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g--~t~L~~A~~~g~~---~~v~~L  180 (460)
                      ++..   ......+++.|+..|+.+++++|+++|++            ++.+|..|  .||||+|......   +++++|
T Consensus       332 a~~~---r~~~~n~~~~Aa~~gn~eIVelLIs~GAD------------IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklL  396 (631)
T PHA02792        332 ATLY---RFKHINKYFQKFDNRDPKVVEYILKNGNV------------VVEDDDNIINIMPLFPTLSIHESDVLSILKLC  396 (631)
T ss_pred             Cccc---cCCcchHHHHHHHcCCHHHHHHHHHcCCc------------hhhhcCCCCChhHHHHHHHhccHhHHHHHHHH
Confidence            2221   11356678899999999999999999998            78888775  6999998877654   468899


Q ss_pred             HHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----------hChHHHHHhh
Q 012618          181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK----------YKHQACAALL  250 (460)
Q Consensus       181 l~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~----------~~~~~i~~~L  250 (460)
                      +++|+    +.+.+|..|.||||+|+..++.+++++|+++|++++..|..|.|||++|+.          ....+++++|
T Consensus       397 Is~GA----DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lL  472 (631)
T PHA02792        397 KPYID----DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEII  472 (631)
T ss_pred             HhcCC----ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            99999    556778899999999999999999999999999999999999999999976          2235779999


Q ss_pred             CCCCCCCC
Q 012618          251 NPSSAEPL  258 (460)
Q Consensus       251 l~~ga~~~  258 (460)
                      +++++++.
T Consensus       473 Ls~~p~i~  480 (631)
T PHA02792        473 LSKLPTIE  480 (631)
T ss_pred             HhcCCChh
Confidence            99987543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=6e-28  Score=237.74  Aligned_cols=213  Identities=17%  Similarity=0.053  Sum_probs=182.0

Q ss_pred             HHHHcCCHHHHHHHHHcCCCcccc----cCCCCCccHHHHHHH--cCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618           17 VAVENGDLQMIEAMVEADPTVLGM----TSGYGKQSALHLAAA--YGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA   90 (460)
Q Consensus        17 ~Aa~~g~~~~vk~Ll~~~~~~~~~----~~~~~g~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~   90 (460)
                      +|+..+..|+++.|+.+|++++..    ..+..++|+||.|+.  .|+.++|++|+++   |++++..  ++.||||.|+
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~---GADIn~~--~~~t~lh~A~  157 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH---GAVIYKI--ECLNAYFRGI  157 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC---CCCCCCC--CCCCHHHHHH
Confidence            899999999999999999997611    234568999999999  8999999999999   9999974  4589999999


Q ss_pred             HcCCHHHHHHHHHcCCccccCCC-----CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHH
Q 012618           91 MNGKLSCVKKLIESGAFILNFDS-----LQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL  165 (460)
Q Consensus        91 ~~g~~~~v~~Ll~~g~~~~~~~~-----~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L  165 (460)
                      ..++.+++++|+++|+++.+..+     ..+.|++|.|+..++.+++++|+++|++            +|.+|..|.|||
T Consensus       158 ~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD------------IN~kD~~G~TpL  225 (437)
T PHA02795        158 CKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED------------INQLDAGGRTLL  225 (437)
T ss_pred             HcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC------------cCcCCCCCCCHH
Confidence            99999999999999986533331     3478999999999999999999999998            899999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCC--------HHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 012618          166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGS--------LECIRELLAWGADRVQPDAFGRIPYAI  237 (460)
Q Consensus       166 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~--------~~~v~~Ll~~gad~~~~d~~G~tpL~~  237 (460)
                      |+|+..|+.+++++|+++|+    +.+.+|..|.||||+|+..|+        .+++++|+++|++++..+..   .+..
T Consensus       226 h~Aa~~g~~eiVelLL~~GA----dIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~---~~~~  298 (437)
T PHA02795        226 YRAIYAGYIDLVSWLLENGA----NVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLA---ILNN  298 (437)
T ss_pred             HHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHH---hhhc
Confidence            99999999999999999999    556778899999999999984        69999999999999765432   2211


Q ss_pred             HHHhChHHHHHhhCCCCC
Q 012618          238 ALKYKHQACAALLNPSSA  255 (460)
Q Consensus       238 A~~~~~~~i~~~Ll~~ga  255 (460)
                        ...+.++++.|+.+..
T Consensus       299 --~~~n~~~ik~lI~y~~  314 (437)
T PHA02795        299 --TIENHDVIKLCIKYFM  314 (437)
T ss_pred             --ccchHHHHHHHHHHHH
Confidence              1226788888877765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=1.9e-27  Score=205.54  Aligned_cols=222  Identities=27%  Similarity=0.325  Sum_probs=200.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHH
Q 012618            9 ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMV   88 (460)
Q Consensus         9 ~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~   88 (460)
                      ..|+..+-.|...|+.++++.++...++-+..+ +.+|.++++.|+-.++...++.+|.+   ++..|..+-.+++|+++
T Consensus        60 ~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t-~p~g~~~~~v~ap~~s~~k~sttltN---~~rgnevs~~p~s~~sl  135 (296)
T KOG0502|consen   60 ALGESLLTVAVRSGNSDVAVQSAQLDPDAIDET-DPEGWSALLVAAPCGSVDKVSTTLTN---GARGNEVSLMPWSPLSL  135 (296)
T ss_pred             hcCCcccchhhhcCCcHHHHHhhccCCCCCCCC-CchhhhhhhhcCCCCCcceeeeeecc---cccCCccccccCChhhH
Confidence            457778888999999999999998887765554 46799999999999999999999999   89999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHH
Q 012618           89 AAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA  168 (460)
Q Consensus        89 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A  168 (460)
                      ++...+.+++..+.++..   +..|..|.|||++|+..|++++|++|++.|++            ++...+...++|.+|
T Consensus       136 sVhql~L~~~~~~~~n~V---N~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd------------p~~lgk~resALsLA  200 (296)
T KOG0502|consen  136 SVHQLHLDVVDLLVNNKV---NACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD------------PDALGKYRESALSLA  200 (296)
T ss_pred             HHHHHHHHHHHHHhhccc---cCccccCchHhHHHHhcCchHHHHHHHHcCCC------------hhhhhhhhhhhHhHH
Confidence            999999998888877643   77889999999999999999999999999999            677788899999999


Q ss_pred             HHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHH
Q 012618          169 ARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAA  248 (460)
Q Consensus       169 ~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~  248 (460)
                      .+.|..++|++||+.+.    +++..|.+|-|||-+|++.++.++|+.||+.|||++..+..|.+++.+|+..|+. +++
T Consensus       201 t~ggytdiV~lLL~r~v----dVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vq  275 (296)
T KOG0502|consen  201 TRGGYTDIVELLLTREV----DVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQ  275 (296)
T ss_pred             hcCChHHHHHHHHhcCC----CcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHH
Confidence            99999999999999999    6677899999999999999999999999999999999999999999999999987 666


Q ss_pred             hhCCCC
Q 012618          249 LLNPSS  254 (460)
Q Consensus       249 ~Ll~~g  254 (460)
                      ..+++-
T Consensus       276 qvie~h  281 (296)
T KOG0502|consen  276 QVIEKH  281 (296)
T ss_pred             HHHHHH
Confidence            555443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=2.9e-25  Score=242.23  Aligned_cols=176  Identities=23%  Similarity=0.263  Sum_probs=154.4

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618           45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA  124 (460)
Q Consensus        45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  124 (460)
                      ++.++||.||..|+.++++.|++.   |+++|..|..|.||||+|+..|+.+++++|+++|+++ +..|.+|.||||+|+
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~---G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~  599 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKA---KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAI  599 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHH
Confidence            456889999999999999999998   9999999999999999999999999999999999987 778889999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHH
Q 012618          125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF  204 (460)
Q Consensus       125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~  204 (460)
                      ..|+.+++++|++.++.            .  ....+.++||.|+..|+.+++++|+++|+    +.+.+|..|.||||+
T Consensus       600 ~~g~~~iv~~L~~~~~~------------~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Ga----din~~d~~G~TpLh~  661 (823)
T PLN03192        600 SAKHHKIFRILYHFASI------------S--DPHAAGDLLCTAAKRNDLTAMKELLKQGL----NVDSEDHQGATALQV  661 (823)
T ss_pred             HhCCHHHHHHHHhcCcc------------c--CcccCchHHHHHHHhCCHHHHHHHHHCCC----CCCCCCCCCCCHHHH
Confidence            99999999999977654            1  23457789999999999999999999999    556678889999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCCCCCCCC-CCHHHHHHHhC
Q 012618          205 AARGGSLECIRELLAWGADRVQPDAFG-RIPYAIALKYK  242 (460)
Q Consensus       205 A~~~g~~~~v~~Ll~~gad~~~~d~~G-~tpL~~A~~~~  242 (460)
                      |+..|+.+++++|+++|+|++..|..| .||+.++....
T Consensus       662 A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        662 AMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence            999999999999999999999999888 89988875543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.94  E-value=3.8e-26  Score=228.74  Aligned_cols=230  Identities=28%  Similarity=0.322  Sum_probs=183.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcC-----C------CcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCC
Q 012618           13 SALFVAVENGDLQMIEAMVEAD-----P------TVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRY   81 (460)
Q Consensus        13 t~L~~Aa~~g~~~~vk~Ll~~~-----~------~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~   81 (460)
                      +-|..|++.|+++.|..||+..     +      .......+++|.|+||.|+.+|+.+++++|++.   .+.++..+..
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~---ea~ldl~d~k   81 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDY---EALLDLCDTK   81 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcc---hhhhhhhhcc
Confidence            4577888889999999888742     1      122233457888999999999999999999988   7888888888


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC
Q 012618           82 KQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG  161 (460)
Q Consensus        82 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g  161 (460)
                      |.+|||+|+.+|+.+++++|+..+.. .+..+..|.||||.|+..||.+++.+|+.++++            .-.+|..+
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad------------p~i~nns~  148 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD------------PFIRNNSK  148 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCC------------ccccCccc
Confidence            88999999999999999998888844 477778888999999999999999999998888            46678888


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcccc----CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 012618          162 ATPLHLAARQGWSECVHTLLDNGALACS----STGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI  237 (460)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~----~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~  237 (460)
                      .|+|.+|++.|..++|+.|+....++..    ....++..+.+|||+|+++|+.++++.|++.|.|+|.....| |+||.
T Consensus       149 ~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talhe  227 (854)
T KOG0507|consen  149 ETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHE  227 (854)
T ss_pred             ccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhh
Confidence            8999999999999999988877332211    123445667888999999999999999999999988876665 78999


Q ss_pred             HHHhChHHHHHhhCCCCCCCCc
Q 012618          238 ALKYKHQACAALLNPSSAEPLV  259 (460)
Q Consensus       238 A~~~~~~~i~~~Ll~~ga~~~~  259 (460)
                      |+..|..+++.+|++.|.....
T Consensus       228 aalcgk~evvr~ll~~gin~h~  249 (854)
T KOG0507|consen  228 AALCGKAEVVRFLLEIGINTHI  249 (854)
T ss_pred             HhhcCcchhhhHHHhhcccccc
Confidence            9999999999999888874443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=7.1e-26  Score=245.47  Aligned_cols=231  Identities=21%  Similarity=0.132  Sum_probs=178.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCccHHH-HHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618           10 RSESALFVAVENGDLQMIEAMVEA--DPTVLGMTSGYGKQSALH-LAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL   86 (460)
Q Consensus        10 ~g~t~L~~Aa~~g~~~~vk~Ll~~--~~~~~~~~~~~~g~t~Lh-~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL   86 (460)
                      .++.+|+.|++.|+.+.|+.+++.  +.++  ...+..|.|||| .|+.+++.+++++|++.   ++    .+..|.|||
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~i--n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~---g~----~~~~G~T~L   86 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNI--NCPDRLGRSALFVAAIENENLELTELLLNL---SC----RGAVGDTLL   86 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCC--CCcCccchhHHHHHHHhcChHHHHHHHHhC---CC----CCCcChHHH
Confidence            567899999999999999999998  5555  344678999999 89999999999999998   65    577899999


Q ss_pred             HHHHHcC---CHHHHHHHHHcCCc---------cccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcccc
Q 012618           87 MVAAMNG---KLSCVKKLIESGAF---------ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFV  154 (460)
Q Consensus        87 ~~A~~~g---~~~~v~~Ll~~g~~---------~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v  154 (460)
                      |.|+..+   ...+++.+...+.+         ........|.||||+|+..|+.++|++|++.|++.+..........-
T Consensus        87 h~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~  166 (743)
T TIGR00870        87 HAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKS  166 (743)
T ss_pred             HHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcC
Confidence            9998732   22344444444432         11112346999999999999999999999999984421110000000


Q ss_pred             c--cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcC---------CHHHHHHHHHcCCC
Q 012618          155 N--IRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG---------SLECIRELLAWGAD  223 (460)
Q Consensus       155 ~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g---------~~~~v~~Ll~~gad  223 (460)
                      .  .....|.||||+|+..|+.+++++|+++|+    +.+..|..|+||||+|+..+         ...+.+++++.++.
T Consensus       167 ~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga----din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~  242 (743)
T TIGR00870       167 QGVDSFYHGESPLNAAACLGSPSIVALLSEDPA----DILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDK  242 (743)
T ss_pred             CCCCcccccccHHHHHHHhCCHHHHHHHhcCCc----chhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence            0  112468999999999999999999999999    55667889999999999986         23456667666555


Q ss_pred             C-------CCCCCCCCCHHHHHHHhChHHHHHhhCCC
Q 012618          224 R-------VQPDAFGRIPYAIALKYKHQACAALLNPS  253 (460)
Q Consensus       224 ~-------~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~  253 (460)
                      .       +..|.+|.||||+|+..|+.+++++|++.
T Consensus       243 ~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       243 LRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             cCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            4       66799999999999999999999999884

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.93  E-value=1.9e-25  Score=223.84  Aligned_cols=231  Identities=28%  Similarity=0.299  Sum_probs=198.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM   87 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~   87 (460)
                      +..|.|+||.|+.+|+.++++.|+++.+-+....  ..|.+|||+|++.|+.+++++||.+   +..+|..+..|.||||
T Consensus        46 d~~gfTalhha~Lng~~~is~llle~ea~ldl~d--~kg~~plhlaaw~g~~e~vkmll~q---~d~~na~~~e~~tplh  120 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCD--TKGILPLHLAAWNGNLEIVKMLLLQ---TDILNAVNIENETPLH  120 (854)
T ss_pred             CccchhHHHHHHhcCchHHHHHHhcchhhhhhhh--ccCcceEEehhhcCcchHHHHHHhc---ccCCCcccccCcCccc
Confidence            3479999999999999999999999988774443  5789999999999999999999999   8899999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHH
Q 012618           88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL  167 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~  167 (460)
                      .|+++|+.+++.+|+.+|+++ ...+..+.|+|.+|++.|..++++.|+...-.  .....  ...-..++..+.+|||+
T Consensus       121 laaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~--~~~~~--~~~~~~~~~~~~~plHl  195 (854)
T KOG0507|consen  121 LAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQKKFP--VQSSL--RVGDIKRPFPAIYPLHL  195 (854)
T ss_pred             hhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhhccc--hhhcc--cCCCCCCCCCCcCCcch
Confidence            999999999999999999999 66778999999999999999999999998322  11111  22245677888999999


Q ss_pred             HHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC---hH
Q 012618          168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK---HQ  244 (460)
Q Consensus       168 A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~---~~  244 (460)
                      |+++|+.++++.|++.|.++|...     ..-|+||.|+..|..++|++|++.|++...+|.+|+|+|.+-....   ..
T Consensus       196 aakngh~~~~~~ll~ag~din~~t-----~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~  270 (854)
T KOG0507|consen  196 AAKNGHVECMQALLEAGFDINYTT-----EDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRY  270 (854)
T ss_pred             hhhcchHHHHHHHHhcCCCccccc-----ccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhh
Confidence            999999999999999999766543     2459999999999999999999999999999999999999877654   34


Q ss_pred             HHHHhhCCC
Q 012618          245 ACAALLNPS  253 (460)
Q Consensus       245 ~i~~~Ll~~  253 (460)
                      +++-++...
T Consensus       271 ei~ga~~~~  279 (854)
T KOG0507|consen  271 EIAGAVKNF  279 (854)
T ss_pred             hhhhhhhcc
Confidence            566555443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=2.7e-26  Score=198.44  Aligned_cols=207  Identities=25%  Similarity=0.312  Sum_probs=187.7

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCc
Q 012618            5 MSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQT   84 (460)
Q Consensus         5 ~~~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~t   84 (460)
                      ...+.+|.++++.|+-.|+.+.+..+|.++...+...  --+.+|+.+++...+++++..+.++     .+|..|+.|+|
T Consensus        90 ~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs--~~p~s~~slsVhql~L~~~~~~~~n-----~VN~~De~GfT  162 (296)
T KOG0502|consen   90 DETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVS--LMPWSPLSLSVHQLHLDVVDLLVNN-----KVNACDEFGFT  162 (296)
T ss_pred             CCCCchhhhhhhhcCCCCCcceeeeeecccccCCccc--cccCChhhHHHHHHHHHHHHHHhhc-----cccCccccCch
Confidence            3456679999999999999999999999988876553  3678999999999999999888876     67889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618           85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP  164 (460)
Q Consensus        85 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~  164 (460)
                      ||+||+..|++.+|++||+.|+++ ....+...++|.+|...|..++|++|+..+.+            +|..|-+|-||
T Consensus       163 pLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~lLL~r~vd------------VNvyDwNGgTp  229 (296)
T KOG0502|consen  163 PLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVELLLTREVD------------VNVYDWNGGTP  229 (296)
T ss_pred             HhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC------------cceeccCCCce
Confidence            999999999999999999999998 66667888999999999999999999999988            99999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 012618          165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYA  236 (460)
Q Consensus       165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~  236 (460)
                      |-||++-++.+||+.||..|+    +.+..+..|+++|..|+..|+. +|+..+++-++.+.+|...++|+|
T Consensus       230 LlyAvrgnhvkcve~Ll~sGA----d~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  230 LLYAVRGNHVKCVESLLNSGA----DVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             eeeeecCChHHHHHHHHhcCC----CcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            999999999999999999999    5566778899999999999998 999999998888888888888865

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=6.4e-24  Score=231.69  Aligned_cols=164  Identities=25%  Similarity=0.280  Sum_probs=152.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618           79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD  158 (460)
Q Consensus        79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d  158 (460)
                      +..+.++|+.||..|+.++++.|++.|+++ +..|..|+||||+|+..|+.+++++|+++|++            +|.+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad------------in~~d  588 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKHACN------------VHIRD  588 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC------------CCCcC
Confidence            445779999999999999999999999998 78889999999999999999999999999988            89999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618          159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA  238 (460)
Q Consensus       159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A  238 (460)
                      .+|.||||+|+..|+.+++++|++.++..+      ...+.++||+|+..|+.+++++|+++|+|+|.+|..|+||||+|
T Consensus       589 ~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A  662 (823)
T PLN03192        589 ANGNTALWNAISAKHHKIFRILYHFASISD------PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVA  662 (823)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhcCcccC------cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            999999999999999999999999887332      23577999999999999999999999999999999999999999


Q ss_pred             HHhChHHHHHhhCCCCCCCCccc
Q 012618          239 LKYKHQACAALLNPSSAEPLVWP  261 (460)
Q Consensus       239 ~~~~~~~i~~~Ll~~ga~~~~~~  261 (460)
                      +..|+.+++++|+++||++...+
T Consensus       663 ~~~g~~~iv~~Ll~~GAdv~~~~  685 (823)
T PLN03192        663 MAEDHVDMVRLLIMNGADVDKAN  685 (823)
T ss_pred             HHCCcHHHHHHHHHcCCCCCCCC
Confidence            99999999999999999887643

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=8.9e-24  Score=229.12  Aligned_cols=241  Identities=23%  Similarity=0.128  Sum_probs=182.2

Q ss_pred             CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH-HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 012618           44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM-VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHY  122 (460)
Q Consensus        44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  122 (460)
                      .++...|+.|+..|+.+.|+.+++... +.++|..|..|+|||| .|+.+++.+++++|++.|+     .+..|.||||.
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~-~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~   88 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPK-KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHA   88 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhcccc-ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHH
Confidence            356789999999999999999998633 6788999999999999 8889999999999999987     45689999999


Q ss_pred             HHHcCCHHH----HHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCC------
Q 012618          123 AAYYGHSDC----LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTG------  192 (460)
Q Consensus       123 A~~~g~~~i----v~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~------  192 (460)
                      |+.. ..+.    +..+...+......  +.........+..|.||||+|+..|+.++|++|+++|++++....      
T Consensus        89 A~~~-~~~~v~~ll~~l~~~~~~~~~~--~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~  165 (743)
T TIGR00870        89 ISLE-YVDAVEAILLHLLAAFRKSGPL--ELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVK  165 (743)
T ss_pred             HHhc-cHHHHHHHHHHHhhcccccCch--hhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhc
Confidence            9873 3333    33333333211000  000000122345799999999999999999999999998764321      


Q ss_pred             ----CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC---------hHHHHHhhCCCCCCCCc
Q 012618          193 ----GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK---------HQACAALLNPSSAEPLV  259 (460)
Q Consensus       193 ----~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~---------~~~i~~~Ll~~ga~~~~  259 (460)
                          .....|.||||+|+..|+.+++++|+++|+|++..|..|+||||+|+..+         ...+.++++..++....
T Consensus       166 ~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~  245 (743)
T TIGR00870       166 SQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRD  245 (743)
T ss_pred             CCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC
Confidence                11246899999999999999999999999999999999999999999886         23455666665553321


Q ss_pred             ccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhc
Q 012618          260 WPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNE  296 (460)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~  296 (460)
                      .   .......+..+.++|+.|...++.+..+.+++.
T Consensus       246 ~---~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       246 S---KELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             h---HhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            1   001123466788999999999999999999874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=2e-23  Score=202.86  Aligned_cols=218  Identities=27%  Similarity=0.323  Sum_probs=172.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc
Q 012618           13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN   92 (460)
Q Consensus        13 t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~   92 (460)
                      -.+..|+..|+.+-|..||..|++++.  .+.+|.|+||-++.-.+.+||++|+++   |+++|..|..|+||||.|+..
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~--~n~DglTalhq~~id~~~e~v~~l~e~---ga~Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNL--CNVDGLTALHQACIDDNLEMVKFLVEN---GANVNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCccc--cCCccchhHHHHHhcccHHHHHHHHHh---cCCccccccccCCcchhhccc
Confidence            357778899999999999999988843  457899999999999999999999999   999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCC-CC-------------cccCCCccccccCC
Q 012618           93 GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS-PV-------------ANTWGFSRFVNIRD  158 (460)
Q Consensus        93 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~-~~-------------~~~~~~~~~v~~~d  158 (460)
                      |++.++++|+..|+++ ...+..|..|+.++...-..+++..-....... ..             ..-...+...+.++
T Consensus       117 g~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~  195 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARH  195 (527)
T ss_pred             ccHHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccc
Confidence            9999999999999987 344456666655443222222211111110000 00             00000111267777


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618          159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA  238 (460)
Q Consensus       159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A  238 (460)
                      ..|.|+||.|+.+|..++.++|++.|.    ..+.+|.+|+||||.|+..|..+++++|+++|++.+.....|.||+.+|
T Consensus       196 ~rG~T~lHvAaa~Gy~e~~~lLl~ag~----~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~  271 (527)
T KOG0505|consen  196 ARGATALHVAAANGYTEVAALLLQAGY----SVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVA  271 (527)
T ss_pred             cccchHHHHHHhhhHHHHHHHHHHhcc----CcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccch
Confidence            779999999999999999999999999    6778889999999999999999999999999999999999999999988


Q ss_pred             HH
Q 012618          239 LK  240 (460)
Q Consensus       239 ~~  240 (460)
                      ..
T Consensus       272 de  273 (527)
T KOG0505|consen  272 DE  273 (527)
T ss_pred             hh
Confidence            65

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=2.1e-23  Score=193.02  Aligned_cols=160  Identities=28%  Similarity=0.331  Sum_probs=146.1

Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc-----CCHHHHHHHHHhcCCCCCcccCC
Q 012618           75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY-----GHSDCLQALLTAARTSPVANTWG  149 (460)
Q Consensus        75 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~  149 (460)
                      +|.-|.+|.|+||||+.++|+++|+.||+.|...++.++..|+||+++|+..     .+.++|..|+..|.         
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn---------  331 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD---------  331 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC---------
Confidence            5778899999999999999999999999999988899999999999999864     46788999998875         


Q ss_pred             CccccccC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCC
Q 012618          150 FSRFVNIR-DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW-GADRVQP  227 (460)
Q Consensus       150 ~~~~v~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~  227 (460)
                          ||.+ ...|+|+|++|+.+|+.++|+.||.-||    ++|.+|.+|.|+|+.|+..|+.+||++||.. ++|+...
T Consensus       332 ----VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgA----dVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLt  403 (452)
T KOG0514|consen  332 ----VNAKASQHGQTALMLAVSHGRVDMVKALLACGA----DVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLT  403 (452)
T ss_pred             ----cchhhhhhcchhhhhhhhcCcHHHHHHHHHccC----CCccccCCccHHHhhhhhhChHHHHHHHhccCcccceee
Confidence                5654 4689999999999999999999999999    6677889999999999999999999999987 7999999


Q ss_pred             CCCCCCHHHHHHHhChHHHHHhhC
Q 012618          228 DAFGRIPYAIALKYKHQACAALLN  251 (460)
Q Consensus       228 d~~G~tpL~~A~~~~~~~i~~~Ll  251 (460)
                      |.+|-|+|.+|...|+.+|.-+|.
T Consensus       404 D~DgSTAl~IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  404 DVDGSTALSIALEAGHREIAVMLY  427 (452)
T ss_pred             cCCCchhhhhHHhcCchHHHHHHH
Confidence            999999999999999999998883

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=4.8e-23  Score=190.71  Aligned_cols=161  Identities=33%  Similarity=0.412  Sum_probs=143.8

Q ss_pred             CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCccccCCCCCC
Q 012618           42 SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN-----GKLSCVKKLIESGAFILNFDSLQG  116 (460)
Q Consensus        42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~~g  116 (460)
                      .|.+|+|+||||+..+|+++|+.||+..  -+++|..|+-|+||+|+|+..     .+.++|+.|..-|- ++..-...|
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSg--vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ~g  340 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSG--VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQHG  340 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccC--cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhhhc
Confidence            3578999999999999999999999984  679999999999999999864     46789999988774 434556789


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCC
Q 012618          117 RTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGY  196 (460)
Q Consensus       117 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~  196 (460)
                      +|+|++|+.+|+.++|+.||..+++            ||.+|.+|-|+|++|+.+|+.|++++||..-.   .+....|.
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAd------------VNiQDdDGSTALMCA~EHGhkEivklLLA~p~---cd~sLtD~  405 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGAD------------VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS---CDISLTDV  405 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCC------------CccccCCccHHHhhhhhhChHHHHHHHhccCc---ccceeecC
Confidence            9999999999999999999999999            99999999999999999999999999997643   25567788


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHc
Q 012618          197 PGSTPLHFAARGGSLECIRELLAW  220 (460)
Q Consensus       197 ~g~TpLh~A~~~g~~~~v~~Ll~~  220 (460)
                      +|.|+|.+|...|+.+|.-+|..+
T Consensus       406 DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  406 DGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             CCchhhhhHHhcCchHHHHHHHHH
Confidence            999999999999999999888765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=3.9e-22  Score=175.77  Aligned_cols=144  Identities=22%  Similarity=0.320  Sum_probs=115.2

Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHH---HHHHHHhcCCCCC
Q 012618           72 YTNTDALNRYKQTPLMVAAMNGKL----SCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC---LQALLTAARTSPV  144 (460)
Q Consensus        72 ~~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~i---v~~Ll~~~~~~~~  144 (460)
                      +++++..+.++.++||.|++.|+.    +++++|++.|+.+ +..+..|+||||+|+..|+.+.   +++|++.+++   
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad---   85 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD---   85 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC---
Confidence            556666777788888888888887    5666777777766 6667788888888888877554   7888888877   


Q ss_pred             cccCCCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHH-cCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 012618          145 ANTWGFSRFVNIRD-ESGATPLHLAARQGWSECVHTLLD-NGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA  222 (460)
Q Consensus       145 ~~~~~~~~~v~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga  222 (460)
                               ++.++ ..|.||||+|+..++.+++++|++ .|+    +.+..+..|.||||+|+..++.+++++|+++|+
T Consensus        86 ---------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~ga----d~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743         86 ---------INARELGTGNTLLHIAASTKNYELAEWLCRQLGV----NLGAINYQHETAYHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             ---------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCC----CccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                     78887 478889999988888888888885 687    445567788899999998888899999999999


Q ss_pred             CCCCCCCCCC
Q 012618          223 DRVQPDAFGR  232 (460)
Q Consensus       223 d~~~~d~~G~  232 (460)
                      +++.++..|.
T Consensus       153 ~~~~~~~~~~  162 (166)
T PHA02743        153 VCDDPLSIGL  162 (166)
T ss_pred             CCCCcccCCc
Confidence            8888887764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.88  E-value=5.3e-23  Score=211.72  Aligned_cols=261  Identities=23%  Similarity=0.225  Sum_probs=231.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCcc-CCCCCCcHHH
Q 012618            9 ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA-LNRYKQTPLM   87 (460)
Q Consensus         9 ~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~~~g~tpL~   87 (460)
                      ..-+|+|..|+..|+.|+|+.|+.+|+++..  ++..|.+||.+|+-.||..+|+.||.+   .++++. .|+.+.|+|-
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rganieh--rdkkgf~plImaatagh~tvV~~llk~---ha~veaQsdrtkdt~lS  829 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGANIEH--RDKKGFVPLIMAATAGHITVVQDLLKA---HADVEAQSDRTKDTMLS  829 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhcccccc--cccccchhhhhhcccCchHHHHHHHhh---hhhhhhhcccccCceEE
Confidence            3457899999999999999999999999955  457899999999999999999999999   888876 4677899999


Q ss_pred             HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccC--CCCCCCHH
Q 012618           88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR--DESGATPL  165 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~--d~~g~t~L  165 (460)
                      +||..|+.++|++||..|++- ..++...+|||.+|...|..+++..|+..|..            ||.+  .+.|..||
T Consensus       830 lacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~Gse------------InSrtgSklgisPL  896 (2131)
T KOG4369|consen  830 LACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSE------------INSRTGSKLGISPL  896 (2131)
T ss_pred             EecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhcccc------------cccccccccCcchh
Confidence            999999999999999999987 66778889999999999999999999999987            5554  36788999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHH
Q 012618          166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA  245 (460)
Q Consensus       166 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~  245 (460)
                      ++|..+|+.+.++.||+.|.++|..+.   .+.+|+|-+|+..|..++|.+||.+.+++..+-+.|.|||+-++..|..+
T Consensus       897 mlatmngh~~at~~ll~~gsdiNaqIe---TNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvd  973 (2131)
T KOG4369|consen  897 MLATMNGHQAATLSLLQPGSDINAQIE---TNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVD  973 (2131)
T ss_pred             hhhhhccccHHHHHHhcccchhccccc---cccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccc
Confidence            999999999999999999998876654   46789999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618          246 CAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETI  298 (460)
Q Consensus       246 i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~  298 (460)
                      +-++|+..|||.+..|.+..        ..++|..++..++...+..++++..
T Consensus       974 vg~~li~~gad~nasPvp~T--------~dtalti~a~kGh~kfv~~lln~~a 1018 (2131)
T KOG4369|consen  974 VGNLLIAAGADTNASPVPNT--------WDTALTIPANKGHTKFVPKLLNGDA 1018 (2131)
T ss_pred             cchhhhhcccccccCCCCCc--------CCccceeecCCCchhhhHHhhCCcc
Confidence            99999999999887665432        2356667778888888888887543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=1.7e-21  Score=189.44  Aligned_cols=217  Identities=25%  Similarity=0.229  Sum_probs=169.1

Q ss_pred             HHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC
Q 012618           49 ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH  128 (460)
Q Consensus        49 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~  128 (460)
                      .+.-|+..|.++=|+.||..   +++++..|.+|.|+||.++.-.+.+||++|+++|+++ +..|..|+||||.|+..|+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~---ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNR---GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGY  118 (527)
T ss_pred             HHHhccccccHHHHHHHhcc---CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhccccc
Confidence            45667788999999999999   8999999999999999999999999999999999999 7778899999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHc-CC-------------HHHHHHHHHcCCccccCCCCC
Q 012618          129 SDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ-GW-------------SECVHTLLDNGALACSSTGGN  194 (460)
Q Consensus       129 ~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~-g~-------------~~~v~~Ll~~ga~~~~~~~~~  194 (460)
                      ..++++|+.+|++....+..+...+-...+..+.+.+-.++.. |-             ..=+...+..|.    .....
T Consensus       119 ~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~----~~d~~  194 (527)
T KOG0505|consen  119 LNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGA----ELDAR  194 (527)
T ss_pred             HHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccc----ccccc
Confidence            9999999999998433222211111111111122222222111 10             112223334666    44555


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHH
Q 012618          195 GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPE  273 (460)
Q Consensus       195 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~  273 (460)
                      +..|.|.||.|+.+|..++.++|+++|.+++..|.+||||||.|+.+++.++.++|+.+|++............++..+
T Consensus       195 ~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  195 HARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            5669999999999999999999999999999999999999999999999999999999999988776666666555544

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=4.2e-21  Score=169.87  Aligned_cols=136  Identities=24%  Similarity=0.273  Sum_probs=115.5

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCc
Q 012618          111 FDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGW----SECVHTLLDNGAL  186 (460)
Q Consensus       111 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~  186 (460)
                      .++..|.||||+|+..|+.+++++|+......      .....++.+|..|.||||+|+..|+    .+++++|++.|++
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~------~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad   89 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGD------CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD   89 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccc------hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC
Confidence            45568999999999999999999886532100      0011278999999999999999998    5899999999994


Q ss_pred             cccCCCCCCC-CCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCC
Q 012618          187 ACSSTGGNGY-PGSTPLHFAARGGSLECIRELLA-WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE  256 (460)
Q Consensus       187 ~~~~~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~  256 (460)
                          .+.++. .|.||||+|+..++.+++++|+. .|++++..|..|+|||++|+..++.+++++|+++++.
T Consensus        90 ----in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         90 ----INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             ----CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence                455554 79999999999999999999998 5999999999999999999999999999999988764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=4.2e-21  Score=169.20  Aligned_cols=139  Identities=17%  Similarity=0.088  Sum_probs=119.6

Q ss_pred             CCccccCCCCCCChHHHHHHHcCCH----HHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHH---HH
Q 012618          105 GAFILNFDSLQGRTCLHYAAYYGHS----DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE---CV  177 (460)
Q Consensus       105 g~~~~~~~~~~g~t~L~~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~---~v  177 (460)
                      ++++ ...+..+.++||+|+..|+.    +++++|++.+..            ++.+|..|+||||+|+..|+.+   ++
T Consensus        10 ~~~~-~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~------------~~~~d~~g~t~Lh~Aa~~g~~~~~~~i   76 (166)
T PHA02743         10 NLGA-VEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL------------LHRYDHHGRQCTHMVAWYDRANAVMKI   76 (166)
T ss_pred             chHH-hhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh------------hhccCCCCCcHHHHHHHhCccCHHHHH
Confidence            4444 33446788999999999998    566677777766            7889999999999999998865   48


Q ss_pred             HHHHHcCCccccCCCCCC-CCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618          178 HTLLDNGALACSSTGGNG-YPGSTPLHFAARGGSLECIRELLA-WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA  255 (460)
Q Consensus       178 ~~Ll~~ga~~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga  255 (460)
                      ++|+++|+    +.+.++ ..|.||||+|+..++.+++++|+. .|++++.+|..|.||||+|+..++.+++++|+.+|+
T Consensus        77 ~~Ll~~Ga----din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743         77 ELLVNMGA----DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             HHHHHcCC----CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999    445566 479999999999999999999995 799999999999999999999999999999999999


Q ss_pred             CCCcc
Q 012618          256 EPLVW  260 (460)
Q Consensus       256 ~~~~~  260 (460)
                      +....
T Consensus       153 ~~~~~  157 (166)
T PHA02743        153 VCDDP  157 (166)
T ss_pred             CCCCc
Confidence            77643

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.85  E-value=2.2e-22  Score=207.25  Aligned_cols=280  Identities=22%  Similarity=0.230  Sum_probs=221.3

Q ss_pred             CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC
Q 012618            2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR   80 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   80 (460)
                      |+++.- +..|.+||.+|+..|+..+|+.|+.+.+++... .+..+.|+|.+|+..|..++|++||..   |++-..++-
T Consensus       780 ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQ-sdrtkdt~lSlacsggr~~vvelLl~~---gankehrnv  855 (2131)
T KOG4369|consen  780 GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQ-SDRTKDTMLSLACSGGRTRVVELLLNA---GANKEHRNV  855 (2131)
T ss_pred             cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhh-cccccCceEEEecCCCcchHHHHHHHh---hccccccch
Confidence            455554 557999999999999999999999998888554 357788999999999999999999998   888888888


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccccCC-CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccC-----------
Q 012618           81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFD-SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTW-----------  148 (460)
Q Consensus        81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~-----------  148 (460)
                      ..+|||-+|...|.+++|..|+..|+.+.... .+.|-.||++|...||-+.++.|++.+.+.+.....           
T Consensus       856 sDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~f  935 (2131)
T KOG4369|consen  856 SDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALF  935 (2131)
T ss_pred             hhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccc
Confidence            88888888888888888888888887763322 345778888888888888888888877664321111           


Q ss_pred             -C----------CccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 012618          149 -G----------FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL  217 (460)
Q Consensus       149 -~----------~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~L  217 (460)
                       +          +...+..+-..|.|||+-++..|.+++-++||..|+|++...--  ....|+|.+++..||...|+.|
T Consensus       936 qgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp--~T~dtalti~a~kGh~kfv~~l 1013 (2131)
T KOG4369|consen  936 QGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVP--NTWDTALTIPANKGHTKFVPKL 1013 (2131)
T ss_pred             cCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCC--CcCCccceeecCCCchhhhHHh
Confidence             1          11226778889999999999999999999999999988765432  2456899999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 012618          218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNET  297 (460)
Q Consensus       218 l~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~  297 (460)
                      +...+.+..+|++|.|+|.+|+..++...+.+|+++++++..          .+....+.+-.|+.++..++++.....+
T Consensus      1014 ln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~----------qdnr~~S~~maafRKgh~~iVk~mv~~a 1083 (2131)
T KOG4369|consen 1014 LNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQ----------QDNRTNSRTMAAFRKGHFAIVKKMVPPA 1083 (2131)
T ss_pred             hCCccceecccCCCCcccchhccCCccccchHHhhcccChhh----------hhcccccccHHHHHhchhheeccccCch
Confidence            999999999999999999999999999999999999986543          3334445566677777777776655433

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.3e-20  Score=179.05  Aligned_cols=150  Identities=19%  Similarity=0.179  Sum_probs=123.1

Q ss_pred             CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCC----CCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHH
Q 012618           46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALN----RYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLH  121 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~----~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  121 (460)
                      ..++||.|+..|+.+++++|+++   |+++|.++    ..|.||||+|+..++.+++++|+++|+++....+..|.||||
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~~---GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh  109 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILKL---GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLY  109 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHC---CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHH
Confidence            34678888888999999999999   99998874    589999999999999999999999999883334567899999


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChH
Q 012618          122 YAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP  201 (460)
Q Consensus       122 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp  201 (460)
                      +|+..++.+++++|+..|++            ++.+|..|.||||+|+..++.+++.++...+         .+..+.+|
T Consensus       110 ~Aa~~~~~eivklLL~~GAd------------in~kd~~G~TpL~~A~~~~~~~~~~~~~~~~---------~~~~~~~~  168 (300)
T PHA02884        110 ISVLHGCLKCLEILLSYGAD------------INIQTNDMVTPIELALMICNNFLAFMICDNE---------ISNFYKHP  168 (300)
T ss_pred             HHHHcCCHHHHHHHHHCCCC------------CCCCCCCCCCHHHHHHHhCChhHHHHhcCCc---------ccccccCh
Confidence            99999999999999999988            7888999999999999988888876664322         23456688


Q ss_pred             HHHHHhcCCHHHHHHHHHcCC
Q 012618          202 LHFAARGGSLECIRELLAWGA  222 (460)
Q Consensus       202 Lh~A~~~g~~~~v~~Ll~~ga  222 (460)
                      ++++   ++.+++++|+.+++
T Consensus       169 ~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        169 KKIL---INFDILKILVSHFI  186 (300)
T ss_pred             hhhh---ccHHHHHHHHHHHH
Confidence            8865   36889999998876

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=166.32  Aligned_cols=126  Identities=20%  Similarity=0.220  Sum_probs=60.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc------CCccccCCCCCCChHHHHHHHcCC----HHHHHHHHHhcCCCCCcccC
Q 012618           79 NRYKQTPLMVAAMNGKLSCVKKLIES------GAFILNFDSLQGRTCLHYAAYYGH----SDCLQALLTAARTSPVANTW  148 (460)
Q Consensus        79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~------g~~~~~~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~~~~~~~~~~~  148 (460)
                      |..|.||||+|+..|+.+++++|+..      |+++ +..|..|+||||+|+..|+    .+++++|++.+++       
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-------   89 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-------   89 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-------
Confidence            34444555555555555554444321      2332 3444445555555555544    2445555554444       


Q ss_pred             CCccccccCCC-CCCCHHHHHHHcCCHHHHHHHHH-cCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 012618          149 GFSRFVNIRDE-SGATPLHLAARQGWSECVHTLLD-NGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG  221 (460)
Q Consensus       149 ~~~~~v~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g  221 (460)
                           ++.++. .|.||||+|+..++.+++++|++ .|+    +.+..|..|.||||+|+..++.+++++|++++
T Consensus        90 -----in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~----~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         90 -----INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGI----DLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             -----CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence                 444442 45555555555555555555554 244    23333444555555555555555555555544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=8.3e-21  Score=165.50  Aligned_cols=138  Identities=21%  Similarity=0.217  Sum_probs=108.6

Q ss_pred             cCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCH---HHHHHHHHcCCc
Q 012618          110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS---ECVHTLLDNGAL  186 (460)
Q Consensus       110 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~~ga~  186 (460)
                      +..|..|.||||+|+..|+.  +.++...+.....     ....++.+|..|.||||+|+..|+.   +++++|++.|+ 
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~-----~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga-   82 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDE-----NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA-   82 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcch-----hHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC-
Confidence            44566788888888888873  3333322211000     0011455788999999999999987   46899999999 


Q ss_pred             cccCCCCCC-CCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCC
Q 012618          187 ACSSTGGNG-YPGSTPLHFAARGGSLECIRELLA-WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL  258 (460)
Q Consensus       187 ~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~  258 (460)
                         +.+.++ ..|.||||+|+..++.+++++|+. .|++++..|..|+||||+|+..++.+++++|+.+|++..
T Consensus        83 ---din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         83 ---DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             ---CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence               445565 489999999999999999999998 499999999999999999999999999999999998653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=6.8e-20  Score=174.20  Aligned_cols=151  Identities=16%  Similarity=0.155  Sum_probs=130.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCccccc--CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccC-CCCCCcHHH
Q 012618           11 SESALFVAVENGDLQMIEAMVEADPTVLGMT--SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDAL-NRYKQTPLM   87 (460)
Q Consensus        11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~--~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-~~~g~tpL~   87 (460)
                      -.++|+.|++.|+.+++++|+++|++++...  .+..|.||||+|+..++.+++++|+++   |+++|.+ +..|.||||
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~---GADVN~~~~~~g~TpLh  109 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY---GADVNRYAEEAKITPLY  109 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCcCcccCCCCCCHHH
Confidence            3457888888899999999999999986542  245789999999999999999999999   9999986 467999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHH
Q 012618           88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL  167 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~  167 (460)
                      +|+..++.+++++|++.|+++ +..+..|.||||+|+..++.+++..+...                + .+..+.+|+++
T Consensus       110 ~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~  171 (300)
T PHA02884        110 ISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDN----------------E-ISNFYKHPKKI  171 (300)
T ss_pred             HHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCC----------------c-ccccccChhhh
Confidence            999999999999999999998 77888999999999999999887666421                1 45667788887


Q ss_pred             HHHcCCHHHHHHHHHcCC
Q 012618          168 AARQGWSECVHTLLDNGA  185 (460)
Q Consensus       168 A~~~g~~~~v~~Ll~~ga  185 (460)
                      +   ++.+++++|+++++
T Consensus       172 ~---~n~ei~~~Lish~v  186 (300)
T PHA02884        172 L---INFDILKILVSHFI  186 (300)
T ss_pred             h---ccHHHHHHHHHHHH
Confidence            5   46899999999987

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=4.1e-20  Score=161.14  Aligned_cols=132  Identities=21%  Similarity=0.195  Sum_probs=83.8

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCC--c----cccCCCCCCChHHHHHHHcCCH---HHHHHHHHhcCCCCCcc
Q 012618           76 DALNRYKQTPLMVAAMNGKLSCVKKLIESGA--F----ILNFDSLQGRTCLHYAAYYGHS---DCLQALLTAARTSPVAN  146 (460)
Q Consensus        76 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~--~----~~~~~~~~g~t~L~~A~~~g~~---~iv~~Ll~~~~~~~~~~  146 (460)
                      +..|..|.||||+|+..|+.  +++++..+.  +    .....+..|+||||+|+..|+.   +++++|++.+++     
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad-----   83 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD-----   83 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC-----
Confidence            34556677777777777663  222222211  1    1223456677777777777765   356677777766     


Q ss_pred             cCCCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHHc-CCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q 012618          147 TWGFSRFVNIRD-ESGATPLHLAARQGWSECVHTLLDN-GALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADR  224 (460)
Q Consensus       147 ~~~~~~~v~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~  224 (460)
                             ++.++ ..|.||||+|+..++.+++++|++. |+    +.+.++..|.||||+|+..|+.+++++|+++|++.
T Consensus        84 -------in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~----d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         84 -------INGKERVFGNTPLHIAVYTQNYELATWLCNQPGV----NMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             -------ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC----CCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                   66666 3677777777777777777777763 66    44555667777777777777777777777777765


Q ss_pred             C
Q 012618          225 V  225 (460)
Q Consensus       225 ~  225 (460)
                      +
T Consensus       153 ~  153 (154)
T PHA02736        153 K  153 (154)
T ss_pred             C
Confidence            4

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.79  E-value=1.4e-18  Score=145.36  Aligned_cols=143  Identities=28%  Similarity=0.296  Sum_probs=122.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCC
Q 012618           84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT  163 (460)
Q Consensus        84 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t  163 (460)
                      --+.+|+..+....|+.||+..++.++.+|.+|+||||-|+++|+.+||+.|+..+++            .+.+...|+|
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn------------~~a~T~~GWT  132 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN------------KEAKTNEGWT  132 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCC------------cccccccCcc
Confidence            3467888899999999999999998899999999999999999999999999999998            7888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCH-HHHHHHH-HcCCCCCCCCCCCCCHHHHHHHh
Q 012618          164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSL-ECIRELL-AWGADRVQPDAFGRIPYAIALKY  241 (460)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~-~~v~~Ll-~~gad~~~~d~~G~tpL~~A~~~  241 (460)
                      |||.|+..++.+++-+||.+|++|+.    ......||||+|+...+. ..+++|+ ..++++-..+..+.||+.+|.+.
T Consensus       133 PLhSAckWnN~~va~~LLqhgaDVnA----~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  133 PLHSACKWNNFEVAGRLLQHGADVNA----QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             chhhhhcccchhHHHHHHhccCcccc----cccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            99999999999999999999996654    444668999999877664 4556655 34788888899999999999765


Q ss_pred             C
Q 012618          242 K  242 (460)
Q Consensus       242 ~  242 (460)
                      +
T Consensus       209 ~  209 (228)
T KOG0512|consen  209 S  209 (228)
T ss_pred             h
Confidence            4

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=5.5e-18  Score=141.88  Aligned_cols=143  Identities=24%  Similarity=0.269  Sum_probs=107.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcC
Q 012618           14 ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG   93 (460)
Q Consensus        14 ~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g   93 (460)
                      .+.+|+..+.+..|+.||+..++..+. ++.+|.||||.|+.+|+.+||+.|+..   |++++.+...|+||||-||.-+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNt-rD~D~YTpLHRAaYn~h~div~~ll~~---gAn~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNT-RDEDEYTPLHRAAYNGHLDIVHELLLS---GANKEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccc-cccccccHHHHHHhcCchHHHHHHHHc---cCCcccccccCccchhhhhccc
Confidence            467788888888888888888776543 457788888888888888888888888   8888888888888888888888


Q ss_pred             CHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCH-HHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcC
Q 012618           94 KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS-DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG  172 (460)
Q Consensus        94 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g  172 (460)
                      +.+++-+||++|+++ +.......||||+|+...+. ..+++|+......           ....+..+.||+.+|-+.+
T Consensus       142 N~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~-----------pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH-----------PGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             chhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccC-----------hhhhcCccchHHHHHHHhh
Confidence            888888888888887 55556778888888866554 4455555433221           3445667778888877654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.76  E-value=9.3e-18  Score=171.10  Aligned_cols=195  Identities=26%  Similarity=0.289  Sum_probs=157.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCC-------CcccccCCCCCccHHHHHHHc---CcHHHHHHHHhccCCCCCCcc--CC
Q 012618           12 ESALFVAVENGDLQMIEAMVEADP-------TVLGMTSGYGKQSALHLAAAY---GQIEVLSMLLDQFFLYTNTDA--LN   79 (460)
Q Consensus        12 ~t~L~~Aa~~g~~~~vk~Ll~~~~-------~~~~~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~--~~   79 (460)
                      +.+++.|...+.++.+..|+..+.       +.....+..-|.|.||.|..+   ++.++++.||+.++.-++--.  ..
T Consensus       102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            368899999999999998887663       111122245689999999984   456999999997543222111  23


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCcccc--------CCC--------------CCCChHHHHHHHcCCHHHHHHHHH
Q 012618           80 RYKQTPLMVAAMNGKLSCVKKLIESGAFILN--------FDS--------------LQGRTCLHYAAYYGHSDCLQALLT  137 (460)
Q Consensus        80 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~--------~~~--------------~~g~t~L~~A~~~g~~~iv~~Ll~  137 (460)
                      ..|+||||+|+.+.+.++|++|++.|||+..        ..|              ..|..||.+||..++.+++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            6799999999999999999999999998721        111              236789999999999999999999


Q ss_pred             hcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 012618          138 AARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL  217 (460)
Q Consensus       138 ~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~L  217 (460)
                      ++++            ++.+|..|+|.||..+..-..++..++|++|++  ......|..|-|||.+|++-|+.++.+.+
T Consensus       262 ~gAd------------~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLAaklGk~emf~~i  327 (782)
T KOG3676|consen  262 HGAD------------PNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLAAKLGKKEMFQHI  327 (782)
T ss_pred             cCCC------------CCccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHHHHhhhHHHHHHH
Confidence            9998            899999999999999999888999999999995  33667788899999999999999999999


Q ss_pred             HHc
Q 012618          218 LAW  220 (460)
Q Consensus       218 l~~  220 (460)
                      ++.
T Consensus       328 le~  330 (782)
T KOG3676|consen  328 LER  330 (782)
T ss_pred             HHh
Confidence            987

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=1.3e-18  Score=156.76  Aligned_cols=117  Identities=33%  Similarity=0.418  Sum_probs=84.4

Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCc
Q 012618           72 YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFS  151 (460)
Q Consensus        72 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  151 (460)
                      ..+.|.-|..|++|||+|++.|+..+++.|+.+|+.+ +..+....||||+|+..||.++|+.|++..++          
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkll~~kad----------   92 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD----------   92 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHHHHHhcc----------
Confidence            4566666777777777777777777777777777766 66666667777777777777777777777666          


Q ss_pred             cccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618          152 RFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA  205 (460)
Q Consensus       152 ~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A  205 (460)
                        +|..+..|+||||||+..|...+.+-|+..|+    .++..++.|.|||..|
T Consensus        93 --vnavnehgntplhyacfwgydqiaedli~~ga----~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   93 --VNAVNEHGNTPLHYACFWGYDQIAEDLISCGA----AVNICNKKGMTPLDKA  140 (448)
T ss_pred             --cchhhccCCCchhhhhhhcHHHHHHHHHhccc----eeeecccCCCCchhhh
Confidence              77777777777777777777777777777777    4455566677777665

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.73  E-value=1.5e-17  Score=149.99  Aligned_cols=153  Identities=26%  Similarity=0.349  Sum_probs=109.4

Q ss_pred             HHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHH
Q 012618           19 VENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCV   98 (460)
Q Consensus        19 a~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v   98 (460)
                      ++.|+.--|+..|+.-...++. .+..|.+|||+|++.|+..+|++||.+   |+.+|..|.-..||||+|+.+|+-++|
T Consensus         8 cregna~qvrlwld~tehdln~-gddhgfsplhwaakegh~aivemll~r---garvn~tnmgddtplhlaaahghrdiv   83 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNV-GDDHGFSPLHWAAKEGHVAIVEMLLSR---GARVNSTNMGDDTPLHLAAAHGHRDIV   83 (448)
T ss_pred             hhcCCeEEEEEEecCccccccc-ccccCcchhhhhhhcccHHHHHHHHhc---ccccccccCCCCcchhhhhhcccHHHH
Confidence            3444444444444433332222 345788888888888888888888888   888888887778888888888888888


Q ss_pred             HHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHH
Q 012618           99 KKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVH  178 (460)
Q Consensus        99 ~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~  178 (460)
                      +.|++..+++ +..+..|.||||||+..|...+.+-|+..|+.            ++..+++|.|||..|--.-..-+.+
T Consensus        84 qkll~~kadv-navnehgntplhyacfwgydqiaedli~~ga~------------v~icnk~g~tpldkakp~l~~~l~e  150 (448)
T KOG0195|consen   84 QKLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAA------------VNICNKKGMTPLDKAKPMLKNTLLE  150 (448)
T ss_pred             HHHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccce------------eeecccCCCCchhhhchHHHHHHHH
Confidence            8888888887 77778888888888888888888888888887            7888888888887765332222333


Q ss_pred             HHHHcCCccc
Q 012618          179 TLLDNGALAC  188 (460)
Q Consensus       179 ~Ll~~ga~~~  188 (460)
                      +--++|-.++
T Consensus       151 ~aek~gq~~n  160 (448)
T KOG0195|consen  151 IAEKHGQSPN  160 (448)
T ss_pred             HHHHhCCCCC
Confidence            3334555433

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=3.5e-17  Score=166.95  Aligned_cols=199  Identities=23%  Similarity=0.206  Sum_probs=163.2

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccC------CCCCCccCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCcccc----CCCC
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFF------LYTNTDALNRYKQTPLMVAAMN---GKLSCVKKLIESGAFILN----FDSL  114 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~------~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~----~~~~  114 (460)
                      .++..|...+..+.+..|+....      ..-+++.+...|.|.||.|..+   ++.++++.|++.-+.+++    -...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            67888888888888888876511      0145666777899999999984   456899999987664322    2235


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccC--------------CCCCCCHHHHHHHcCCHHHHHHH
Q 012618          115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR--------------DESGATPLHLAARQGWSECVHTL  180 (460)
Q Consensus       115 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~--------------d~~g~t~L~~A~~~g~~~~v~~L  180 (460)
                      .|+||||+|+.+.+.++|++|++.|++....-.-   .+....              -..|+.||.+||..++.+++++|
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G---~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACG---AFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhc---cccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            7999999999999999999999999984321110   001111              24688999999999999999999


Q ss_pred             HHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhChHHHHHhhCCC
Q 012618          181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD--RVQPDAFGRIPYAIALKYKHQACAALLNPS  253 (460)
Q Consensus       181 l~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~  253 (460)
                      +++||    +++.+|..|+|.||+.+..-..++..++|++|++  ...+|..|.|||.+|++.|+.+|.+.+++.
T Consensus       260 l~~gA----d~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  260 LAHGA----DPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcCC----CCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999    7788999999999999999999999999999999  888999999999999999999999999887

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.72  E-value=1.8e-16  Score=131.84  Aligned_cols=124  Identities=43%  Similarity=0.614  Sum_probs=112.6

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCC
Q 012618          112 DSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSST  191 (460)
Q Consensus       112 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  191 (460)
                      .+..|.||||+|+..++.+++++|++.+..            .+..+..|.||||+|+..+..+++++|++.|+    ..
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~------------~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~----~~   66 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD------------VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA----DV   66 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC------------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----Cc
Confidence            346799999999999999999999999876            57888999999999999999999999999997    44


Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhC
Q 012618          192 GGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLN  251 (460)
Q Consensus       192 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll  251 (460)
                      +..+..|.||+|+|+..++.+++++|+++|.+++..|..|.||+++|+..++.+++++|+
T Consensus        67 ~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          67 NARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            555678899999999999999999999999999999999999999999999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=6.1e-17  Score=127.23  Aligned_cols=63  Identities=44%  Similarity=0.609  Sum_probs=29.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 012618          161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP  227 (460)
Q Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~  227 (460)
                      |.||||+|+..|+.+++++|+++|+    +.+.+|..|+||||+|+..|+.+++++|+++|++++.+
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGA----DINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIR   88 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTT----CTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcc----cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            4445555555555555555555554    22333344555555555555555555555555554443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=7.2e-17  Score=126.81  Aligned_cols=85  Identities=33%  Similarity=0.527  Sum_probs=76.3

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCC
Q 012618           15 LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGK   94 (460)
Q Consensus        15 L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~   94 (460)
                      ||+|++.|+++++++|++.+.++..      |.||||+|+.+|+.+++++|++.   |++++..|..|+||||+|+.+|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLEN---GADINSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHT---TTCTT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHh---cccccccCCCCCCHHHHHHHcCC
Confidence            7899999999999999998877733      67899999999999999999998   99999999999999999999999


Q ss_pred             HHHHHHHHHcCCcc
Q 012618           95 LSCVKKLIESGAFI  108 (460)
Q Consensus        95 ~~~v~~Ll~~g~~~  108 (460)
                      .+++++|+++|+++
T Consensus        72 ~~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   72 LEIVKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHHHHTTT-T
T ss_pred             HHHHHHHHHcCCCC
Confidence            99999999999887

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=4.3e-16  Score=129.56  Aligned_cols=122  Identities=46%  Similarity=0.657  Sum_probs=70.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618           79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD  158 (460)
Q Consensus        79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d  158 (460)
                      |.+|.||||+|+..++.+++++|++.+.+. ...+..|.||||+|+..++.+++++|++.+..            ++..+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~------------~~~~~   70 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD------------VNARD   70 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------------ccccC
Confidence            344556666666666666666666555544 34444555666666666666666666655543            44555


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 012618          159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL  217 (460)
Q Consensus       159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~L  217 (460)
                      ..+.||+|+|+..++.+++++|+++|.    ..+..+..+.|||++|+..++.+++++|
T Consensus        71 ~~~~~~l~~a~~~~~~~~~~~L~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          71 KDGNTPLHLAARNGNLDVVKLLLKHGA----DVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHcCC----CCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            556666666666666666666666554    3333445555666666666666666655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.63  E-value=2.5e-15  Score=112.79  Aligned_cols=104  Identities=29%  Similarity=0.509  Sum_probs=92.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHH
Q 012618           12 ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAM   91 (460)
Q Consensus        12 ~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~   91 (460)
                      +-.+.+++++|.++-|+..+..|.+++..   ++|++|||+|+-+|+++++++|+..   |++++.+|++|-|||..|+.
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~---~ggR~plhyAAD~GQl~ilefli~i---GA~i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEI---YGGRTPLHYAADYGQLSILEFLISI---GANIQDKDKYGITPLLSAVW   76 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHH---hCCcccchHhhhcchHHHHHHHHHh---ccccCCccccCCcHHHHHHH
Confidence            35689999999999999999999777553   5899999999999999999999999   99999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 012618           92 NGKLSCVKKLIESGAFILNFDSLQGRTCLHY  122 (460)
Q Consensus        92 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  122 (460)
                      .||.++|++||..|++- .....+|.+.+..
T Consensus        77 EGH~~cVklLL~~GAdr-t~~~PdG~~~~ea  106 (117)
T KOG4214|consen   77 EGHRDCVKLLLQNGADR-TIHAPDGTALIEA  106 (117)
T ss_pred             HhhHHHHHHHHHcCccc-ceeCCCchhHHhh
Confidence            99999999999999986 4455567666543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.58  E-value=1.1e-13  Score=127.59  Aligned_cols=131  Identities=38%  Similarity=0.464  Sum_probs=119.1

Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC-----HHHHHHHHHhcC--CCCCccc
Q 012618           75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH-----SDCLQALLTAAR--TSPVANT  147 (460)
Q Consensus        75 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~-----~~iv~~Ll~~~~--~~~~~~~  147 (460)
                      ....+..+.+++|.++..+..+++++|+..|+++ +..+..|.||||+|+..++     .+++++|++.++  ..     
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~-----  139 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV-----  139 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC-----
Confidence            3445667899999999999999999999999999 9999999999999999999     999999999998  32     


Q ss_pred             CCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 012618          148 WGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG  221 (460)
Q Consensus       148 ~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g  221 (460)
                            .+.+|..|.||||+|+..|+.+++++|++.|+    .....+..|.|+|++|+..++.++++.|+..+
T Consensus       140 ------~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~----~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         140 ------NNLRDEDGNTPLHWAALNGDADIVELLLEAGA----DPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ------ccccCCCCCchhHHHHHcCchHHHHHHHhcCC----CCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence                  67779999999999999999999999999999    55556788999999999999999999999976

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=5.7e-14  Score=129.39  Aligned_cols=127  Identities=36%  Similarity=0.500  Sum_probs=120.1

Q ss_pred             CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCC--ccccCCCCC
Q 012618           43 GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGK-----LSCVKKLIESGA--FILNFDSLQ  115 (460)
Q Consensus        43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~g~--~~~~~~~~~  115 (460)
                      +..+.+++|.++..+..+++++|+..   +++++.++..|.||||+|+..++     .+++++|++.|+  ++....+..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLAS---GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHc---CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            34577999999999999999999999   99999999999999999999999     999999999999  676888999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 012618          116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNG  184 (460)
Q Consensus       116 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  184 (460)
                      |.||||+|+..|+.+++++|++.+++            ++.++..|.|++++|+..++.++++.|++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~------------~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGAD------------PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCC------------CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999988            7888999999999999999999999999976

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.56  E-value=2.6e-14  Score=107.36  Aligned_cols=101  Identities=32%  Similarity=0.483  Sum_probs=72.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618           85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP  164 (460)
Q Consensus        85 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~  164 (460)
                      -++|++++|.++-|+..+..|.++....  .|++|||||+.+|..+++++|+..|++            ++.+|++|-||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~--ggR~plhyAAD~GQl~ilefli~iGA~------------i~~kDKygITP   70 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY--GGRTPLHYAADYGQLSILEFLISIGAN------------IQDKDKYGITP   70 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh--CCcccchHhhhcchHHHHHHHHHhccc------------cCCccccCCcH
Confidence            4567777788877777777776663333  677888888888888888888887777            77777788888


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHH
Q 012618          165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH  203 (460)
Q Consensus       165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh  203 (460)
                      |..|+..|+.++|++||.+|+    +......+|.+.+.
T Consensus        71 LLsAvwEGH~~cVklLL~~GA----drt~~~PdG~~~~e  105 (117)
T KOG4214|consen   71 LLSAVWEGHRDCVKLLLQNGA----DRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHhhHHHHHHHHHcCc----ccceeCCCchhHHh
Confidence            877887788888888887777    33333444554443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.47  E-value=3.1e-13  Score=122.25  Aligned_cols=123  Identities=33%  Similarity=0.337  Sum_probs=110.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCC
Q 012618          115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN  194 (460)
Q Consensus       115 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  194 (460)
                      .-..||.-++..|..+....||+.-..            +|.+|..|.++|..|+..|+.++|++||+.|+|+|....  
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~------------vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh--   76 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQ------------VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH--   76 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhh------------hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc--
Confidence            346789999999999999999987554            899999999999999999999999999999998876543  


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCC
Q 012618          195 GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNP  252 (460)
Q Consensus       195 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~  252 (460)
                       ..+.||||+|+.+|+.++.++|++.|+.+...|.-|+|+-..|+.-|+.++|..+..
T Consensus        77 -g~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   77 -GTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             -cccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence             457799999999999999999999999999999999999999999999988877633

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=8.9e-13  Score=119.27  Aligned_cols=118  Identities=28%  Similarity=0.284  Sum_probs=61.6

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG  127 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  127 (460)
                      +||.-++..|+.+-+..||..   --++|.+|..|.|+|..|+..|+.+++++||+.|+|++..+...++||||+|+..|
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~---vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLST---VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHH---hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            455555555555555555543   33345555555555555555555555555555555554444445555555555555


Q ss_pred             CHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 012618          128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL  180 (460)
Q Consensus       128 ~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~L  180 (460)
                      +.++.++|++.|+.            ....+.-|+|+-.+|+.-|+-++|.++
T Consensus        91 n~dvcrllldaGa~------------~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   91 NQDVCRLLLDAGAR------------MYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             CchHHHHHHhccCc------------cccccchhhhHHHHHHHhcchHHHHHH
Confidence            55555555555554            344444555555555555555544443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=7.8e-13  Score=128.42  Aligned_cols=122  Identities=24%  Similarity=0.275  Sum_probs=104.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc
Q 012618           13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN   92 (460)
Q Consensus        13 t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~   92 (460)
                      -.|.-|+..|.+|+|+.++..-.+..  .-+..|.|+||-|+-.||++||++||+.   |+++|..|.+||||||.|+..
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpS--qpNdEGITaLHNAiCaghyeIVkFLi~~---ganVNa~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPS--QPNDEGITALHNAICAGHYEIVKFLIEF---GANVNAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCC--CCCccchhHHhhhhhcchhHHHHHHHhc---CCcccCccCCCCchhhhhhhc
Confidence            35777999999999999998765552  2245799999999999999999999999   999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCccccCCCCCCChHHHHHH--HcCCHHHHHHHHHhc
Q 012618           93 GKLSCVKKLIESGAFILNFDSLQGRTCLHYAA--YYGHSDCLQALLTAA  139 (460)
Q Consensus        93 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~--~~g~~~iv~~Ll~~~  139 (460)
                      +++.+.+.|++.|+.+....-.++.|+..-.-  ..|...+.+||..-.
T Consensus       627 Nnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vq  675 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQ  675 (752)
T ss_pred             CchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHHH
Confidence            99999999999999987777778888876543  467888999997643

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.41  E-value=1.9e-13  Score=97.00  Aligned_cols=55  Identities=44%  Similarity=0.590  Sum_probs=32.8

Q ss_pred             HHHcC-CccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618          180 LLDNG-ALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA  238 (460)
Q Consensus       180 Ll~~g-a~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A  238 (460)
                      ||++| +    +.+.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~----~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPA----DVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T------TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcC----CCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 4    6678889999999999999999999999999999999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.40  E-value=3.8e-13  Score=94.78  Aligned_cols=54  Identities=43%  Similarity=0.571  Sum_probs=38.5

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhC
Q 012618          198 GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLN  251 (460)
Q Consensus       198 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll  251 (460)
                      |+||||+|++.|+.+++++|+++|+|++.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567888888888888888888888888888888888888888888888887774

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.39  E-value=1.9e-12  Score=137.92  Aligned_cols=106  Identities=31%  Similarity=0.345  Sum_probs=97.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCC
Q 012618          118 TCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP  197 (460)
Q Consensus       118 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~  197 (460)
                      +.|+.|+..|+.+++++|++.+++            +|.+|..|.||||+|+..|+.+++++|+++|+    +.+..|..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad------------in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga----dvn~~d~~  147 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD------------PNCRDYDGRTPLHIACANGHVQVVRVLLEFGA----DPTLLDKD  147 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC------------CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC----CCCCCCCC
Confidence            458999999999999999999988            89999999999999999999999999999999    55677889


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHc-------CCCCCCCCCCCCCHHHHHH
Q 012618          198 GSTPLHFAARGGSLECIRELLAW-------GADRVQPDAFGRIPYAIAL  239 (460)
Q Consensus       198 g~TpLh~A~~~g~~~~v~~Ll~~-------gad~~~~d~~G~tpL~~A~  239 (460)
                      |.||||+|+..|+.+++++|+++       |++++..+..|.+|+..+.
T Consensus       148 G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        148 GKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999999999999999999999       8999888888888876554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.38  E-value=1.1e-12  Score=92.35  Aligned_cols=54  Identities=35%  Similarity=0.539  Sum_probs=32.1

Q ss_pred             CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH
Q 012618           46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLI  102 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  102 (460)
                      |.||||+|+..|+.+++++|+++   +.+++.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~---~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH---GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT---TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            45666666666666666666666   6666666666666666666666666666664

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.36  E-value=3.5e-12  Score=135.91  Aligned_cols=86  Identities=28%  Similarity=0.301  Sum_probs=82.5

Q ss_pred             HHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC
Q 012618           49 ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH  128 (460)
Q Consensus        49 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~  128 (460)
                      .|+.|+..|+.+++++|++.   |+++|.+|..|.||||+|+.+|+.+++++|++.|+++ +..|..|.||||+|+..|+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~---Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG---GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCc
Confidence            58899999999999999999   9999999999999999999999999999999999998 7888999999999999999


Q ss_pred             HHHHHHHHHh
Q 012618          129 SDCLQALLTA  138 (460)
Q Consensus       129 ~~iv~~Ll~~  138 (460)
                      .+++++|+++
T Consensus       161 ~~iv~~Ll~~  170 (664)
T PTZ00322        161 REVVQLLSRH  170 (664)
T ss_pred             HHHHHHHHhC
Confidence            9999999998

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=6.7e-12  Score=122.02  Aligned_cols=122  Identities=24%  Similarity=0.243  Sum_probs=104.7

Q ss_pred             ccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618           47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY  126 (460)
Q Consensus        47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  126 (460)
                      .-.|.-|+..|-+++|+..+..   -.|+...|..|.|+||-|+-.||.+||++||++|+++ +..|.+||||||.|+..
T Consensus       551 LaLLLDaaLeGEldlVq~~i~e---v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASC  626 (752)
T KOG0515|consen  551 LALLLDAALEGELDLVQRIIYE---VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASC  626 (752)
T ss_pred             HHHHHhhhhcchHHHHHHHHHh---hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhc
Confidence            3456778899999999999998   7788888999999999999999999999999999999 88889999999999999


Q ss_pred             CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH--HcCCHHHHHHHHHc
Q 012618          127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA--RQGWSECVHTLLDN  183 (460)
Q Consensus       127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~  183 (460)
                      ++..+++.|++.|+..           +-..-.++.|+..-+-  +-|..+|.+||...
T Consensus       627 Nnv~~ckqLVe~Gaav-----------fAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  627 NNVPMCKQLVESGAAV-----------FASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             CchHHHHHHHhccceE-----------EeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            9999999999999873           2333456777776653  45788899998743

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.29  E-value=2.9e-12  Score=90.86  Aligned_cols=50  Identities=38%  Similarity=0.531  Sum_probs=19.3

Q ss_pred             CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618           73 TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        73 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  123 (460)
                      .+++..|..|+||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            455555555555555555555555555555555555 55555555555554

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=1.3e-11  Score=109.17  Aligned_cols=77  Identities=21%  Similarity=0.454  Sum_probs=60.5

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee--cCCc---cccCC
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI--INSA---TELDI  393 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~--~~~~---~~~~~  393 (460)
                      ...-.|-||+|...++++..|||+|||.|+-+|        .+..+....||+|+..|+.--++++  +...   ++..+
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqW--------l~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~~~~~~~~  116 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQW--------LQTRPNSKECPVCKAEVSIDTVVPLYGRGSKKPSDPRKK  116 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHH--------HhhcCCCeeCCccccccccceEEeeeccCCCCCCCcccc
Confidence            345569999999999999999999999999999        4455666899999999988877777  3332   22223


Q ss_pred             -CCCCCccccC
Q 012618          394 -SPSKPRISRK  403 (460)
Q Consensus       394 -~~~~~~~~~~  403 (460)
                       .||||..+|+
T Consensus       117 ~vP~RP~~~R~  127 (230)
T KOG0823|consen  117 DVPPRPAGQRY  127 (230)
T ss_pred             cCCCCCCCccc
Confidence             7888887773

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.18  E-value=1.6e-11  Score=84.76  Aligned_cols=47  Identities=40%  Similarity=0.903  Sum_probs=40.2

Q ss_pred             ccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          322 ELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ..|.||++...++++.||||. +|..|+..+...           ...||+||++|+++
T Consensus         3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-----------~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKR-----------KKKCPICRQPIESV   50 (50)
T ss_dssp             SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-----------TSBBTTTTBB-SEE
T ss_pred             CCCccCCccCCceEEeCCCChHHHHHHhHHhccc-----------CCCCCcCChhhcCC
Confidence            569999999999999999999 899999999553           38899999999874

...

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.96  E-value=1.9e-09  Score=93.94  Aligned_cols=65  Identities=22%  Similarity=0.492  Sum_probs=48.0

Q ss_pred             CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCc-----ccCCCCCCCCcccccccceeeeEee
Q 012618          320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDI-----ITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~-----~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      ....|.||++...+.+..+|||.||+.|+..|........     .........||+||..|...-.+++
T Consensus        17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi   86 (193)
T PLN03208         17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI   86 (193)
T ss_pred             CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence            4567999999999999999999999999999854321110     0112345789999999976555544

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=8.6e-10  Score=103.78  Aligned_cols=59  Identities=27%  Similarity=0.630  Sum_probs=49.8

Q ss_pred             CCCCCccCcccccCCCccEecCCCCcc-chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeecC
Q 012618          317 EASDVELCCICFENLCTIEIKPCGHQM-CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIIN  386 (460)
Q Consensus       317 ~~~~~~~C~iC~~~~~~~~~~~CgH~~-C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~~  386 (460)
                      +......|+||++..++++++||+|.+ |..|+..+-           -....||+||++|..++.++...
T Consensus       286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-----------~q~n~CPICRqpi~~ll~i~~~~  345 (349)
T KOG4265|consen  286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-----------YQTNNCPICRQPIEELLEIYVNK  345 (349)
T ss_pred             cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHH-----------HhhcCCCccccchHhhheecccc
Confidence            334567899999999999999999998 999999882           12256999999999999998743

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=2.2e-10  Score=76.21  Aligned_cols=51  Identities=31%  Similarity=0.768  Sum_probs=43.5

Q ss_pred             ccCcccccCCCccEecCCCCcc-chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618          322 ELCCICFENLCTIEIKPCGHQM-CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA  382 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~CgH~~-C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~  382 (460)
                      .+|.||++.+.+.+..-|||++ |..|..++.          ....-.||+||.+|..+++-
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~----------~~~~g~CPiCRapi~dvIkT   59 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLK----------KALHGCCPICRAPIKDVIKT   59 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHH----------HccCCcCcchhhHHHHHHHh
Confidence            5699999999999999999987 999999982          22347899999999887754

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=1.4e-09  Score=99.09  Aligned_cols=47  Identities=36%  Similarity=0.935  Sum_probs=42.2

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ...|.+|++...++...||||.|||.|...||...           ..||+||.+..-
T Consensus       239 ~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-----------~eCPlCR~~~~p  285 (293)
T KOG0317|consen  239 TRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-----------AECPLCREKFQP  285 (293)
T ss_pred             CCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-----------cCCCcccccCCC
Confidence            35799999999999999999999999999998776           669999998743

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.83  E-value=8.1e-09  Score=100.15  Aligned_cols=95  Identities=34%  Similarity=0.367  Sum_probs=83.4

Q ss_pred             cccCCCCCCCH------HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 012618          154 VNIRDESGATP------LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP  227 (460)
Q Consensus       154 v~~~d~~g~t~------L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~  227 (460)
                      ...+|.+|.+.      ||-.++.|+.++.-.||..||++|....   ..|.||||.|++.|+..-+++|+-+|||++..
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hp---ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~  196 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHP---EKGNTPLHVAAKAGQILQAELLAVYGADPGAQ  196 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCc---ccCCchhHHHHhccchhhhhHHhhccCCCCCC
Confidence            34567777665      8999999999999999999997765443   45899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHhChHHHHHhhC
Q 012618          228 DAFGRIPYAIALKYKHQACAALLN  251 (460)
Q Consensus       228 d~~G~tpL~~A~~~~~~~i~~~Ll  251 (460)
                      |.+|.||+.+|...||.++++-|+
T Consensus       197 d~~GmtP~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  197 DSSGMTPVDYARQGGHHELAERLV  220 (669)
T ss_pred             CCCCCcHHHHHHhcCchHHHHHHH
Confidence            999999999999999988877653

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.80  E-value=4.9e-09  Score=101.24  Aligned_cols=90  Identities=31%  Similarity=0.419  Sum_probs=54.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618           11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA   90 (460)
Q Consensus        11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~   90 (460)
                      +...+++|++.|++..++.+.-.|.++  ...+++.+|+||.||..|+++++++||+.+  +.+++.+|..|+|||.-|.
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~--~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~--kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDL--ETKDYDDRTALHVAAAEGHVEVVKFLLNAC--KVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccc--cccccccchhheeecccCceeHHHHHHHHH--cCCCChhhccCCCcchHhH
Confidence            344566666666666666666666665  233455566666666666666666666654  5556666666666666666


Q ss_pred             HcCCHHHHHHHHHc
Q 012618           91 MNGKLSCVKKLIES  104 (460)
Q Consensus        91 ~~g~~~~v~~Ll~~  104 (460)
                      ..+|.+++++|-+.
T Consensus       582 ~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEA  595 (622)
T ss_pred             hcCcHHHHHHHHHH
Confidence            66666666665543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.78  E-value=7.5e-09  Score=62.78  Aligned_cols=29  Identities=48%  Similarity=0.762  Sum_probs=23.0

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCC
Q 012618          197 PGSTPLHFAARGGSLECIRELLAWGADRV  225 (460)
Q Consensus       197 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  225 (460)
                      +|+||||+|++.|+.++|++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36788888888888888888888888776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.75  E-value=2.8e-08  Score=97.87  Aligned_cols=96  Identities=28%  Similarity=0.279  Sum_probs=55.8

Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 012618          154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRI  233 (460)
Q Consensus       154 v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~t  233 (460)
                      +-.++.+..+.||+|+..|+-++|+|+|++|..-  ..+..|..|.|+||-|+..++-.+.++|++.|+.+-..|..|.|
T Consensus       892 ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e--lld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~t  969 (1004)
T KOG0782|consen  892 LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE--LLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKT  969 (1004)
T ss_pred             eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH--HHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCC
Confidence            4445555556666666666666666666655421  22333455666666666666666666666666666666666666


Q ss_pred             HHHHHHHhChHHHHHhhC
Q 012618          234 PYAIALKYKHQACAALLN  251 (460)
Q Consensus       234 pL~~A~~~~~~~i~~~Ll  251 (460)
                      |-.-|-+.+..+++.+|-
T Consensus       970 p~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  970 PQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             hHHHHHhcCCchHHHHHh
Confidence            666666666666666653

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.73  E-value=1.1e-08  Score=98.73  Aligned_cols=95  Identities=26%  Similarity=0.368  Sum_probs=86.9

Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCH
Q 012618          156 IRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW-GADRVQPDAFGRIP  234 (460)
Q Consensus       156 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~tp  234 (460)
                      .++.++...+++|+..|....++.+.-.|.    +...+|++.+|+||.|+..|+.+++++|++. +.|++.+|..|+||
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~----D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtP  576 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQGM----DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTP  576 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHhcc----cccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCc
Confidence            455677789999999999999999999998    6778899999999999999999999999976 89999999999999


Q ss_pred             HHHHHHhChHHHHHhhCCCC
Q 012618          235 YAIALKYKHQACAALLNPSS  254 (460)
Q Consensus       235 L~~A~~~~~~~i~~~Ll~~g  254 (460)
                      |.-|...+|.+++++|-+.-
T Consensus       577 lDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  577 LDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             chHhHhcCcHHHHHHHHHHh
Confidence            99999999999999996543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.72  E-value=1.8e-08  Score=62.90  Aligned_cols=33  Identities=42%  Similarity=0.659  Sum_probs=28.5

Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 012618          197 PGSTPLHFAARGGSLECIRELLAWGADRVQPDA  229 (460)
Q Consensus       197 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~  229 (460)
                      +|.||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478999999999999999999999999988763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=1.4e-09  Score=98.54  Aligned_cols=47  Identities=32%  Similarity=0.794  Sum_probs=43.2

Q ss_pred             CccCcccccCCCccEecCCCCcc-chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618          321 VELCCICFENLCTIEIKPCGHQM-CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA  382 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~-C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~  382 (460)
                      ..+|.||+|.+++.+|++|||.+ |.+|..++               ..|||||+.|.+++.+
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm---------------~eCPICRqyi~rvvri  347 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM---------------NECPICRQYIVRVVRI  347 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhcccc---------------ccCchHHHHHHHHHhh
Confidence            57899999999999999999988 99999777               6899999999988765

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.69  E-value=1.1e-08  Score=104.72  Aligned_cols=84  Identities=29%  Similarity=0.350  Sum_probs=77.0

Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCC-CCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012618          154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNG-YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR  232 (460)
Q Consensus       154 v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~  232 (460)
                      .|..|..|+|+||+|+..+..+++++||.+|++++    .+| ..|+||||-|+..|+.+++-.||.+|+.+...|++|.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~----vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkegl  120 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVF----VQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGL  120 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceee----eccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCC
Confidence            78899999999999999999999999999999554    333 4699999999999999999999999999999999999


Q ss_pred             CHHHHHHHh
Q 012618          233 IPYAIALKY  241 (460)
Q Consensus       233 tpL~~A~~~  241 (460)
                      +||+.-.+-
T Consensus       121 splq~~~r~  129 (1267)
T KOG0783|consen  121 SPLQFLSRV  129 (1267)
T ss_pred             CHHHHHhhc
Confidence            999987763

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.66  E-value=2.5e-08  Score=91.02  Aligned_cols=54  Identities=26%  Similarity=0.652  Sum_probs=43.6

Q ss_pred             CCccCcccccCCCc--------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          320 DVELCCICFENLCT--------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       320 ~~~~C~iC~~~~~~--------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      ....|.||++....        .+..+|||.||..|...|....           ..||+||.++..+++.++
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~-----------~tCPlCR~~~~~v~~~r~  234 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK-----------NTCPVCRTPFISVIKSRF  234 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC-----------CCCCCCCCEeeEEeeeee
Confidence            45679999997554        2456899999999999995432           689999999998888765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.65  E-value=5.5e-08  Score=96.16  Aligned_cols=95  Identities=25%  Similarity=0.242  Sum_probs=84.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Q 012618          164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH  243 (460)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~  243 (460)
                      -|.-|+.......+-+||.+|-....+....+..|.|+||+|++.|++.+.++|+=+|+|+-.+|..|+|+|.||...+.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            46667888888999999999986555555556778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCCC
Q 012618          244 QACAALLNPSSAEPL  258 (460)
Q Consensus       244 ~~i~~~Ll~~ga~~~  258 (460)
                      .+++.+|+.+|..+.
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            999999999997543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.65  E-value=6.9e-08  Score=95.14  Aligned_cols=101  Identities=20%  Similarity=0.112  Sum_probs=74.6

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhC
Q 012618          165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD--RVQPDAFGRIPYAIALKYK  242 (460)
Q Consensus       165 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~G~tpL~~A~~~~  242 (460)
                      |..|+..+..--++.+-.+|.    +.-.++....|.||+|++.|+-++|++||.+|..  ++..|..|.|+||-|+..+
T Consensus       870 il~av~~~D~~klqE~h~~gg----~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGG----SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCC----ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc
Confidence            444555555444444455565    4455666778899999999999999999998864  5667888999999999999


Q ss_pred             hHHHHHhhCCCCCCCCcccccccccCC
Q 012618          243 HQACAALLNPSSAEPLVWPLQLRNMTD  269 (460)
Q Consensus       243 ~~~i~~~Ll~~ga~~~~~~~~~~~~~~  269 (460)
                      +..+..+|++.||........++....
T Consensus       946 ~r~vc~~lvdagasl~ktd~kg~tp~e  972 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGASLRKTDSKGKTPQE  972 (1004)
T ss_pred             chHHHHHHHhcchhheecccCCCChHH
Confidence            999999999999887776666655433

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=98.64  E-value=1e-08  Score=96.76  Aligned_cols=56  Identities=43%  Similarity=0.903  Sum_probs=46.2

Q ss_pred             CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618          318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA  382 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~  382 (460)
                      .+.+++|+||-++.+++...||||.+|..|.-.|         +.......|||||.+|++.-.+
T Consensus       366 gsTFeLCKICaendKdvkIEPCGHLlCt~CLa~W---------Q~sd~gq~CPFCRcEIKGte~v  421 (563)
T KOG1785|consen  366 GSTFELCKICAENDKDVKIEPCGHLLCTSCLAAW---------QDSDEGQTCPFCRCEIKGTEPV  421 (563)
T ss_pred             cchHHHHHHhhccCCCcccccccchHHHHHHHhh---------cccCCCCCCCceeeEeccccce
Confidence            3567899999999999999999999999999999         2222358899999999665333

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.61  E-value=2.5e-08  Score=102.33  Aligned_cols=79  Identities=20%  Similarity=0.272  Sum_probs=58.7

Q ss_pred             CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHH
Q 012618           43 GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR-YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLH  121 (460)
Q Consensus        43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  121 (460)
                      |..|+|+||+|+..+..+++++||++   |++++.+|+ .|+||||-|+..|+++++-+||.+|+.+ ...|+.|..||.
T Consensus        49 D~~GR~alH~~~S~~k~~~l~wLlqh---Gidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-~i~Dkeglsplq  124 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENKNSFLRWLLQH---GIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-RIKDKEGLSPLQ  124 (1267)
T ss_pred             HhhccceeeeeeccchhHHHHHHHhc---CceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce-EEecccCCCHHH
Confidence            45677777777777777777777777   777777763 4777777777777777777777777766 677777777776


Q ss_pred             HHHH
Q 012618          122 YAAY  125 (460)
Q Consensus       122 ~A~~  125 (460)
                      +-++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            6554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.59  E-value=4.7e-07  Score=88.18  Aligned_cols=97  Identities=26%  Similarity=0.264  Sum_probs=86.1

Q ss_pred             CccCCCCCCc------HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccC
Q 012618           75 TDALNRYKQT------PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTW  148 (460)
Q Consensus        75 ~~~~~~~g~t------pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  148 (460)
                      +..+|.+|.|      -||..++.|+.++--.||..|++++.+....|.||||.|++.|+.--+++|+-.|++       
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-------  192 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-------  192 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-------
Confidence            3345666655      489999999999999999999999888888999999999999999999999999999       


Q ss_pred             CCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 012618          149 GFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN  183 (460)
Q Consensus       149 ~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  183 (460)
                           ++..|.+|+||+.+|-..|+-++.+.|++.
T Consensus       193 -----~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  193 -----PGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             -----CCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence                 899999999999999999999888887764

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.5e-08  Score=95.50  Aligned_cols=55  Identities=31%  Similarity=0.743  Sum_probs=45.6

Q ss_pred             CCCCCCCCccCcccccCCCccEecCCCCcc-chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618          314 NTSEASDVELCCICFENLCTIEIKPCGHQM-CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR  383 (460)
Q Consensus       314 ~~~~~~~~~~C~iC~~~~~~~~~~~CgH~~-C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~  383 (460)
                      ...+......|.||++++.+.++.||||++ |..|+..+               +.||+||+.|..+++++
T Consensus       298 ~~~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l---------------~~CPvCR~rI~~~~k~y  353 (355)
T KOG1571|consen  298 TFRELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL---------------PQCPVCRQRIRLVRKRY  353 (355)
T ss_pred             cccccCCCCceEEecCCccceeeecCCcEEEchHHHhhC---------------CCCchhHHHHHHHHHHh
Confidence            345556667899999999999999999988 66676655               78999999999887654

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.54  E-value=6.1e-08  Score=62.89  Aligned_cols=38  Identities=37%  Similarity=1.030  Sum_probs=31.2

Q ss_pred             CcccccCCCcc-EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618          324 CCICFENLCTI-EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC  372 (460)
Q Consensus       324 C~iC~~~~~~~-~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C  372 (460)
                      |.||++...++ ++++|||.||..|+..+...+           ..||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~-----------~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN-----------PKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT-----------SB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc-----------CCCcCC
Confidence            78999999998 679999999999999994442           789998

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.54  E-value=3.7e-08  Score=65.84  Aligned_cols=40  Identities=33%  Similarity=0.785  Sum_probs=32.8

Q ss_pred             cCcccccCC---CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccc
Q 012618          323 LCCICFENL---CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCR  373 (460)
Q Consensus       323 ~C~iC~~~~---~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr  373 (460)
                      .|.||++..   ..++.++|||.||..|+..|...+           ..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-----------~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-----------NSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-----------SB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-----------CcCCccC
Confidence            599999877   356678999999999999996554           5899998

...

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.50  E-value=9.5e-08  Score=62.76  Aligned_cols=42  Identities=31%  Similarity=0.689  Sum_probs=30.4

Q ss_pred             CcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618          324 CCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC  372 (460)
Q Consensus       324 C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C  372 (460)
                      |.||++-+.+++.++|||.||..|...+.....       .....||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~-------~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS-------GSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS-------SST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccC-------CcCCCCcCC
Confidence            789999999999999999999999999954331       112689988

>PHA02926 zinc finger-like protein; Provisional

Probab=98.48  E-value=7.7e-08  Score=84.66  Aligned_cols=61  Identities=23%  Similarity=0.576  Sum_probs=44.0

Q ss_pred             CCCccCcccccCCC---------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          319 SDVELCCICFENLC---------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       319 ~~~~~C~iC~~~~~---------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      +....|.||++...         ..++.+|+|.||..|...|.....     .......||+||.....+..-+|
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~-----~~~~~rsCPiCR~~f~~I~pSrf  237 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR-----ETGASDNCPICRTRFRNITMSKF  237 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc-----ccCcCCcCCCCcceeeeeccccc
Confidence            34577999998742         245679999999999999955321     12334679999999886655544

>PF13606 Ank_3: Ankyrin repeat

Probab=98.48  E-value=1.7e-07  Score=56.82  Aligned_cols=22  Identities=45%  Similarity=0.797  Sum_probs=9.5

Q ss_pred             ccHHHHHHHcCcHHHHHHHHhc
Q 012618           47 QSALHLAAAYGQIEVLSMLLDQ   68 (460)
Q Consensus        47 ~t~Lh~A~~~g~~~iv~~Ll~~   68 (460)
                      +||||+|+..|++++|++||++
T Consensus         3 ~T~Lh~A~~~g~~e~v~~Ll~~   24 (30)
T PF13606_consen    3 NTPLHLAASNGNIEIVKYLLEH   24 (30)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHc
Confidence            3444444444444444444444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=2.6e-07  Score=91.09  Aligned_cols=86  Identities=29%  Similarity=0.312  Sum_probs=69.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 012618          163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK  242 (460)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~  242 (460)
                      .|||+++.....+-.+.++...  +...++..|..|+||||+|+..|+.+.++.|+.+|||+..+|++|++|||.|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~--~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAK--VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhh--hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcC
Confidence            5699998887776666554443  23356778889999999999999999999999999999999999999999999998


Q ss_pred             hHHHHHhh
Q 012618          243 HQACAALL  250 (460)
Q Consensus       243 ~~~i~~~L  250 (460)
                      +..++..+
T Consensus       100 ~~q~i~~v  107 (560)
T KOG0522|consen  100 NEQIITEV  107 (560)
T ss_pred             CHHHHHHH
Confidence            87666544

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=4.2e-07  Score=89.64  Aligned_cols=86  Identities=22%  Similarity=0.251  Sum_probs=44.0

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCC
Q 012618           15 LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGK   94 (460)
Q Consensus        15 L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~   94 (460)
                      ||+++...+.+-+..++...........+..|+||||+|+..|+.+.++.|+..   ++++..+|..|++|||.|+..|+
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a---~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA---GADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc---CCCccccccccccHHHHHHHcCC
Confidence            555555555554444433332222223334455555555555555555555555   55555555555555555555555


Q ss_pred             HHHHHHHHH
Q 012618           95 LSCVKKLIE  103 (460)
Q Consensus        95 ~~~v~~Ll~  103 (460)
                      .+++..++.
T Consensus       101 ~q~i~~vlr  109 (560)
T KOG0522|consen  101 EQIITEVLR  109 (560)
T ss_pred             HHHHHHHHH
Confidence            555554444

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.47  E-value=4.6e-07  Score=89.84  Aligned_cols=88  Identities=26%  Similarity=0.315  Sum_probs=52.3

Q ss_pred             HHHHHHcCcHHHHHHHHhccCCCCCCc----cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618           50 LHLAAAYGQIEVLSMLLDQFFLYTNTD----ALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY  125 (460)
Q Consensus        50 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  125 (460)
                      |..|+...++..+-+||.+   |....    .-+.+|.|+||+|+..|++.+.++|+-+|+++ ...|.+|+|+|.||-.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAh---g~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~  703 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAH---GSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhc---cCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhh
Confidence            5555555566666666655   32211    22344566666666666666666666666665 5555666666666666


Q ss_pred             cCCHHHHHHHHHhcCC
Q 012618          126 YGHSDCLQALLTAART  141 (460)
Q Consensus       126 ~g~~~iv~~Ll~~~~~  141 (460)
                      .|.-+++..|+++|..
T Consensus       704 a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGCP  719 (749)
T ss_pred             cccHHHHHHHHHcCCC
Confidence            6666666666666654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.46  E-value=2.6e-07  Score=57.50  Aligned_cols=31  Identities=26%  Similarity=0.457  Sum_probs=17.6

Q ss_pred             CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCC
Q 012618           46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALN   79 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~   79 (460)
                      |.||||+|+..|+.+++++||++   |++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~---ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKH---GADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHT---TSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHC---cCCCCCCC
Confidence            45555555555555555555555   55555544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.40  E-value=1.2e-06  Score=91.30  Aligned_cols=124  Identities=24%  Similarity=0.237  Sum_probs=102.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC--cccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618           10 RSESALFVAVENGDLQMIEAMVEADPT--VLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM   87 (460)
Q Consensus        10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~--~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~   87 (460)
                      .++..+..|+..|+.-.|+..++....  ++....|+=|+++|+.|+.+.+.+++++|++.   ....       ..+|.
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~---~~~~-------gdALL   93 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDT---SSEE-------GDALL   93 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcC---cccc-------chHHH
Confidence            456678999999999999999997555  66666677899999999999999999999998   3332       46899


Q ss_pred             HHHHcCCHHHHHHHHHcCCcc---------ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCC
Q 012618           88 VAAMNGKLSCVKKLIESGAFI---------LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP  143 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g~~~---------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~  143 (460)
                      +|+..|.+++|+.++.+-...         ....-..+.|||.+||..++.||++.|+.+++..+
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            999999999999999874432         11122357899999999999999999999998744

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=3e-07  Score=78.05  Aligned_cols=46  Identities=28%  Similarity=0.706  Sum_probs=37.5

Q ss_pred             ccCcccccCCCccE--ecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          322 ELCCICFENLCTIE--IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       322 ~~C~iC~~~~~~~~--~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      -.|.|||+.....+  ...|||+||..|+...-...           ..||+||..|+.
T Consensus       132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-----------~~CP~C~kkIt~  179 (187)
T KOG0320|consen  132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-----------NKCPTCRKKITH  179 (187)
T ss_pred             cCCCceecchhhccccccccchhHHHHHHHHHHHhC-----------CCCCCcccccch
Confidence            57999999887765  37899999999997774333           789999998854

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.36  E-value=1.2e-06  Score=91.32  Aligned_cols=126  Identities=21%  Similarity=0.146  Sum_probs=102.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCC
Q 012618          115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN  194 (460)
Q Consensus       115 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  194 (460)
                      .+.--...|+.+|+...|+..++.......        ++|.+|.-|+++|+.|+.+.+.+++++|+++...    .   
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~l--------ninc~d~lGr~al~iai~nenle~~eLLl~~~~~----~---   88 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKL--------NINCRDPLGRLALHIAIDNENLELQELLLDTSSE----E---   88 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhcccccc--------chhccChHhhhceecccccccHHHHHHHhcCccc----c---
Confidence            344556789999999999999987665222        2899999999999999999999999999998762    1   


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCC----------CCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCc
Q 012618          195 GYPGSTPLHFAARGGSLECIRELLAWGADR----------VQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLV  259 (460)
Q Consensus       195 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~----------~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  259 (460)
                          ..+|.+|+..|..++|++|+.+-...          ...-..+.||+.+|+..++.+|+++|+..|+....
T Consensus        89 ----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   89 ----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence                36899999999999999999874332          12234578999999999999999999999987653

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2.6e-07  Score=83.51  Aligned_cols=46  Identities=33%  Similarity=0.782  Sum_probs=39.8

Q ss_pred             ccCcccccCCCccEecCCCCccchhhHHH-HhhcCCCCcccCCCCCCCCcccccccc
Q 012618          322 ELCCICFENLCTIEIKPCGHQMCAHCTLA-LCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~-~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      ..|.||++.+..+...||||+||+.|... |++..          .-.||+||+.+.
T Consensus       216 ~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k----------~~~CplCRak~~  262 (271)
T COG5574         216 YKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK----------YEFCPLCRAKVY  262 (271)
T ss_pred             cceeeeecccCCcccccccchhhHHHHHHHHHhhc----------cccCchhhhhcc
Confidence            46999999999999999999999999999 76555          245999999863

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.28  E-value=5.6e-07  Score=60.01  Aligned_cols=40  Identities=38%  Similarity=0.916  Sum_probs=32.9

Q ss_pred             CcccccCC---CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccc
Q 012618          324 CCICFENL---CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRC  374 (460)
Q Consensus       324 C~iC~~~~---~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~  374 (460)
                      |.+|++..   ....+++|||.||..|+..+-           .....||+||+
T Consensus         2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-----------~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-----------GKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-----------CCCCCCcCCCC
Confidence            88999887   357778999999999998882           34478999985

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.26  E-value=6.6e-07  Score=95.59  Aligned_cols=91  Identities=34%  Similarity=0.393  Sum_probs=82.3

Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 012618          157 RDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYA  236 (460)
Q Consensus       157 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~  236 (460)
                      .-..|.|+||.|+..+..-++++|+++|+    +.+..|..|+||||.+...|+...+..|+++|++.++.+..|.+|++
T Consensus       652 ~~~~~~s~lh~a~~~~~~~~~e~ll~~ga----~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  652 VLCIGCSLLHVAVGTGDSGAVELLLQNGA----DVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLD  727 (785)
T ss_pred             hhhcccchhhhhhccchHHHHHHHHhcCC----cchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhh
Confidence            34578999999999999999999999999    56778899999999999999999999999999999999999999999


Q ss_pred             HHHHhChHHHHHhhC
Q 012618          237 IALKYKHQACAALLN  251 (460)
Q Consensus       237 ~A~~~~~~~i~~~Ll  251 (460)
                      +|....+.+++-+|.
T Consensus       728 ~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  728 IAMEAANADIVLLLR  742 (785)
T ss_pred             HHhhhccccHHHHHh
Confidence            998887766666553

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.19  E-value=1.4e-06  Score=57.23  Aligned_cols=40  Identities=33%  Similarity=0.843  Sum_probs=34.1

Q ss_pred             CcccccCCCccE-ecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618          324 CCICFENLCTIE-IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC  372 (460)
Q Consensus       324 C~iC~~~~~~~~-~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C  372 (460)
                      |.||++...... .++|||.||..|+..+...         .....||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~---------~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN---------SGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH---------TSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHh---------cCCccCCcC
Confidence            789999999998 8999999999999999543         233679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.1e-06  Score=86.56  Aligned_cols=58  Identities=31%  Similarity=0.595  Sum_probs=47.2

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce--eeeEee
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN--LVAARI  384 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~--~~~~~~  384 (460)
                      ...|.|||+.+..++.+-|||.||..|+.......      +......||+||+.|.-  +..+.+
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s------~~~~~~~CPiC~s~I~~kdl~pv~~  245 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYS------AIKGPCSCPICRSTITLKDLLPVFI  245 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhh------cccCCccCCchhhhccccceeeeee
Confidence            67799999999999999999999999998875444      23445789999999977  555554

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.13  E-value=2.1e-06  Score=57.30  Aligned_cols=44  Identities=34%  Similarity=0.803  Sum_probs=34.2

Q ss_pred             cCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          323 LCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       323 ~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      .|.||++....... .+|||.||..|...|...          ....||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~----------~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS----------GKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHh----------CcCCCCCCCCcC
Confidence            38999999855444 559999999999988443          236799999864

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.11  E-value=5e-06  Score=88.56  Aligned_cols=134  Identities=16%  Similarity=0.157  Sum_probs=100.1

Q ss_pred             cCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHH
Q 012618           41 TSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL  120 (460)
Q Consensus        41 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L  120 (460)
                      .....|++.||+++..+..-+++.+++-  .+......+.+|+-.+|+ |..++.+.+-+|+.....-++++|..|+|||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~--~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEW--AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcc--cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCccc
Confidence            3446788999999999999999998884  255566778888888888 4455666655555443333488899999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 012618          121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN  183 (460)
Q Consensus       121 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  183 (460)
                      |+|+.+|+..++..|++.++.....      .........|.|+-.+|-.+|+..+.-+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~------tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAV------TDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccc------cCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999999888875422      11344556688888888888888777777665

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.06  E-value=3.3e-06  Score=82.94  Aligned_cols=48  Identities=25%  Similarity=0.631  Sum_probs=40.5

Q ss_pred             CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ....|.||++.+.+++.++|||.||..|...+...           ...||+||..+..
T Consensus        25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-----------~~~CP~Cr~~~~~   72 (397)
T TIGR00599        25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-----------QPKCPLCRAEDQE   72 (397)
T ss_pred             cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-----------CCCCCCCCCcccc
Confidence            44689999999999999999999999999887432           1579999998754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.02  E-value=2.7e-05  Score=73.95  Aligned_cols=74  Identities=30%  Similarity=0.546  Sum_probs=63.8

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY  126 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  126 (460)
                      --|..|++.|+.+.|++|++.   |.++|.+|....+||.+|+..||.++|++|+++|+-- .....+|..++ |++.+
T Consensus        38 ~elceacR~GD~d~v~~LVet---gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~-YgaLn  111 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET---GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCH-YGALN  111 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh---CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhh-hhhhh
Confidence            458999999999999999998   9999999999999999999999999999999999954 55666777774 55543

>smart00504 Ubox Modified RING finger domain

Probab=98.01  E-value=7.2e-06  Score=59.41  Aligned_cols=46  Identities=17%  Similarity=0.155  Sum_probs=39.9

Q ss_pred             ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ..|.||++...+++..+|||.+|..|...+...           ...||+|+.+++.
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-----------~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-----------HGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-----------CCCCCCCcCCCCh
Confidence            359999999999999999999999999999543           2679999998854

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.94  E-value=1.1e-05  Score=86.01  Aligned_cols=132  Identities=23%  Similarity=0.169  Sum_probs=99.8

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcccc
Q 012618           76 DALNRYKQTPLMVAAMNGKLSCVKKLIES-GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFV  154 (460)
Q Consensus        76 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v  154 (460)
                      ......|+|.||+++..+...+++.+++- |... ...+.+|.-.+|++ ..++.++.-+|+......           +
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfc-a~lg~ewA~ll~~~~~~a-----------i  634 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFC-AALGYEWAFLPISADGVA-----------I  634 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHh-hhcCCceeEEEEeecccc-----------c
Confidence            34556788999999999999999999986 4443 44556778888884 445566655555433322           8


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCC--CCCCCCChHHHHHHhcCCHHHHHHHHHc
Q 012618          155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTG--GNGYPGSTPLHFAARGGSLECIRELLAW  220 (460)
Q Consensus       155 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~--~~d~~g~TpLh~A~~~g~~~~v~~Ll~~  220 (460)
                      +++|..|+||||+|+..|+..++..|++.|++.+..++  .....|.|+-.+|-.+|+..+.-+|-+.
T Consensus       635 ~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  635 DIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             ccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999999999999988886554433  3345588999999999998888888765

>smart00184 RING Ring finger

Probab=97.93  E-value=9.2e-06  Score=52.13  Aligned_cols=39  Identities=36%  Similarity=0.889  Sum_probs=32.9

Q ss_pred             CcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618          324 CCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC  372 (460)
Q Consensus       324 C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C  372 (460)
                      |.||++....+..++|||.||..|...|..          .....||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~----------~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK----------SGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHH----------hCcCCCCCC
Confidence            789999999999999999999999998843          223669987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.89  E-value=7.8e-06  Score=53.67  Aligned_cols=31  Identities=39%  Similarity=0.846  Sum_probs=20.3

Q ss_pred             CcccccCCCc----cEecCCCCccchhhHHHHhhcC
Q 012618          324 CCICFENLCT----IEIKPCGHQMCAHCTLALCCHK  355 (460)
Q Consensus       324 C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~  355 (460)
                      |.||.+ +.+    ++.++|||.+|..|...+...+
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence            789999 777    8889999999999999995543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.87  E-value=1.5e-05  Score=85.45  Aligned_cols=90  Identities=27%  Similarity=0.245  Sum_probs=81.3

Q ss_pred             CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618           44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  123 (460)
                      ..|.|+||.|+..+..-++++||++   |+++|.+|..|.||||.+...|+...+..|+++|++. ...+..|.++|++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~---ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQN---GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhc---CCcchhhhccCCCcchhhhhhcccchhhhhccccccc-cccCccCcchhhHH
Confidence            3578999999999999999999999   9999999999999999999999999999999999998 77778999999999


Q ss_pred             HHcCCHHHHHHHHH
Q 012618          124 AYYGHSDCLQALLT  137 (460)
Q Consensus       124 ~~~g~~~iv~~Ll~  137 (460)
                      ....+.+++-++.-
T Consensus       730 ~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  730 MEAANADIVLLLRL  743 (785)
T ss_pred             hhhccccHHHHHhh
Confidence            87777776655543

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.87  E-value=1.3e-05  Score=59.65  Aligned_cols=41  Identities=41%  Similarity=0.958  Sum_probs=31.7

Q ss_pred             ccCcccccCC-------------CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccc
Q 012618          322 ELCCICFENL-------------CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCR  373 (460)
Q Consensus       322 ~~C~iC~~~~-------------~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr  373 (460)
                      +.|.||++..             ..++..+|||.|...|+..|...+           ..||+||
T Consensus        20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR   73 (73)
T PF12678_consen   20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN-----------NTCPLCR   73 (73)
T ss_dssp             SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS-----------SB-TTSS
T ss_pred             CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC-----------CcCCCCC
Confidence            3499999877             334556899999999999995444           5899998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.84  E-value=4.5e-05  Score=65.89  Aligned_cols=70  Identities=23%  Similarity=0.273  Sum_probs=62.0

Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCC
Q 012618           72 YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAART  141 (460)
Q Consensus        72 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  141 (460)
                      +.++|.+|..|+|+||.|+..|+.+.+.+|+.+|+..+...|..+.+++.+|-..|..++++.|.+...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            4578999999999999999999999999999999555588889999999999999999999999887544

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=4.6e-05  Score=71.99  Aligned_cols=48  Identities=29%  Similarity=0.735  Sum_probs=39.3

Q ss_pred             CCCccCcccccCCC-------------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          319 SDVELCCICFENLC-------------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       319 ~~~~~C~iC~~~~~-------------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      .....|.||+|...             .+.-+||||.+--.|...||-+.           ..||+||.++.
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-----------QTCPICr~p~i  345 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-----------QTCPICRRPVI  345 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-----------cCCCcccCccc
Confidence            34567999999822             24668999999999999998777           89999999953

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.76  E-value=6.4e-05  Score=64.94  Aligned_cols=72  Identities=28%  Similarity=0.371  Sum_probs=62.9

Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 012618          154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPD  228 (460)
Q Consensus       154 v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d  228 (460)
                      +|.+|..|+|+|+.|+..|..+.+.+|+.+|+   ..+...|..|.+++.+|-+.|..++|+.|.+.-.+-...+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~---a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGV---AFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCc---ccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            89999999999999999999999999999994   2667788899999999999999999999998854444433

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.73  E-value=2.7e-05  Score=73.37  Aligned_cols=48  Identities=23%  Similarity=0.584  Sum_probs=34.4

Q ss_pred             CccCcccccC---CCccEe--cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          321 VELCCICFEN---LCTIEI--KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       321 ~~~C~iC~~~---~~~~~~--~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ...|.+|...   ..++.+  .+|||.||..|...+..          .....||.|+.++..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~----------~~~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----------RGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc----------CCCCCCCCCCCccch
Confidence            4679999984   222222  28999999999998732          123579999998855

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.72  E-value=1.6e-05  Score=72.56  Aligned_cols=45  Identities=29%  Similarity=0.607  Sum_probs=38.6

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      ...|.||-+.....+..+|||.||.-|+.+..           ...+.||+||.+-
T Consensus        25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL-----------~~qp~CP~Cr~~~   69 (391)
T COG5432          25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHL-----------GTQPFCPVCREDP   69 (391)
T ss_pred             HHHhhhhhheeecceecccccchhHHHHHHHh-----------cCCCCCccccccH
Confidence            45799999999999999999999999997763           3348999999764

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.72  E-value=0.00015  Score=68.95  Aligned_cols=58  Identities=33%  Similarity=0.380  Sum_probs=54.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc
Q 012618          117 RTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL  186 (460)
Q Consensus       117 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  186 (460)
                      .--|..|++.|..+.|++|++.|.+            +|.+|....+||.+|...||.++|++||++||.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn------------VN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN------------VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC------------cchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            4568899999999999999998887            999999999999999999999999999999993

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.65  E-value=0.00019  Score=70.65  Aligned_cols=69  Identities=29%  Similarity=0.440  Sum_probs=59.1

Q ss_pred             CHHHHHHHHHcCCccccCCC--CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Q 012618          173 WSECVHTLLDNGALACSSTG--GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKY  241 (460)
Q Consensus       173 ~~~~v~~Ll~~ga~~~~~~~--~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~  241 (460)
                      -...+++|.++++..|..+.  ..++.-.|+||+|+..|...+|.+||+.|+|+...|..|+||+.++...
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccH
Confidence            35788999999987765543  4455678999999999999999999999999999999999999998733

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=1.8e-05  Score=71.36  Aligned_cols=45  Identities=33%  Similarity=0.741  Sum_probs=39.2

Q ss_pred             CcccccCCCccEecCCCCcc-chhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618          324 CCICFENLCTIEIKPCGHQM-CAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR  383 (460)
Q Consensus       324 C~iC~~~~~~~~~~~CgH~~-C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~  383 (460)
                      |..|.++...+.++||.|.+ |..|...+               ..||+|+.++.+.+.+.
T Consensus       161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~---------------~~CPiC~~~~~s~~~v~  206 (207)
T KOG1100|consen  161 CRKCGEREATVLLLPCRHLCLCGICDESL---------------RICPICRSPKTSSVEVN  206 (207)
T ss_pred             ceecCcCCceEEeecccceEecccccccC---------------ccCCCCcChhhceeecc
Confidence            99999999999999999987 99998444               77999999998877654

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=4.2e-05  Score=70.37  Aligned_cols=46  Identities=28%  Similarity=0.674  Sum_probs=37.3

Q ss_pred             CccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          321 VELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       321 ~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      .-.|.|||+.+..   ...+||.|.|-..|...|.-.          -...||+||.+|
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~----------y~~~CPvCrt~i  371 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG----------YSNKCPVCRTAI  371 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhh----------hcccCCccCCCC
Confidence            4579999987754   667899999999999999542          227799999986

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=9.4e-05  Score=70.96  Aligned_cols=47  Identities=28%  Similarity=0.742  Sum_probs=37.7

Q ss_pred             ccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          322 ELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       322 ~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ..|.||+|.+..   +..+||+|.|-..|...|-...          ...||+|++.|-.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~----------r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT----------RTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc----------CccCCCCCCcCCC
Confidence            689999998876   6679999999779999993332          3679999996543

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.50  E-value=3.5e-05  Score=71.87  Aligned_cols=46  Identities=35%  Similarity=0.844  Sum_probs=39.9

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      ...|.||++-+..++..||+|.||.-|+.......           +.||.|+-++.
T Consensus        23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~-----------p~CP~C~~~~~   68 (442)
T KOG0287|consen   23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK-----------PQCPTCCVTVT   68 (442)
T ss_pred             HHHHhHHHHHhcCceeccccchHHHHHHHHHhccC-----------CCCCceecccc
Confidence            45699999999999999999999999998774444           88999998763

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=7.9e-05  Score=69.90  Aligned_cols=54  Identities=24%  Similarity=0.652  Sum_probs=44.3

Q ss_pred             CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618          318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA  382 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~  382 (460)
                      .++..+|+||...+.+.++.||+|.-|..|+.+-.           .+.+.|-+|+..|..++..
T Consensus       419 ~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHl-----------mN~k~CFfCktTv~~~~ld  472 (489)
T KOG4692|consen  419 DSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHL-----------MNCKRCFFCKTTVIDVILD  472 (489)
T ss_pred             CcccccCcceecccchhhccCCCCchHHHHHHHHH-----------hcCCeeeEecceeeehhcc
Confidence            35667899999999999999999999999996552           3348899999998874333

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.45  E-value=8.3e-05  Score=69.55  Aligned_cols=59  Identities=27%  Similarity=0.577  Sum_probs=46.3

Q ss_pred             CCCCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618          316 SEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR  383 (460)
Q Consensus       316 ~~~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~  383 (460)
                      +...+.+.|.||-+..--...+||+|.+|.-|+.++-.--         ....||+||.+-+.++...
T Consensus        56 dtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY---------~~K~C~~CrTE~e~V~fT~  114 (493)
T COG5236          56 DTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALY---------MQKGCPLCRTETEAVVFTA  114 (493)
T ss_pred             ccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHH---------hccCCCccccccceEEEec
Confidence            3344667899999999999999999999999998872211         2267999999987776554

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.26  E-value=0.00014  Score=49.54  Aligned_cols=46  Identities=26%  Similarity=0.610  Sum_probs=37.3

Q ss_pred             CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ....|..|......-.++||||.+|..|..-.             +-.-||+|-.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~-------------rYngCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE-------------RYNGCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEccccccccccccccceeeccccChh-------------hccCCCCCCCcccC
Confidence            34679999999899999999999999998333             33679999998753

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.21  E-value=0.00013  Score=67.32  Aligned_cols=54  Identities=20%  Similarity=0.404  Sum_probs=43.3

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      ...|.||+....-++-++|+|.||.-|........          ...|++||.+|..-+..+-
T Consensus         7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd----------k~~CavCR~pids~i~~~p   60 (324)
T KOG0824|consen    7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKND----------KKTCAVCRFPIDSTIDFEP   60 (324)
T ss_pred             CCcceeeeccCCcCccccccchhhhhhhcchhhcC----------CCCCceecCCCCcchhcch
Confidence            34699999999999999999999999996553322          3569999999988766653

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00024  Score=68.56  Aligned_cols=61  Identities=23%  Similarity=0.530  Sum_probs=46.5

Q ss_pred             CCCccCcccccCCCccE-----e---cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618          319 SDVELCCICFENLCTIE-----I---KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR  383 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~-----~---~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~  383 (460)
                      +....|.||++..-...     +   .+|-|.+|..|+..|-+....    .....+.||+||.++..+..-.
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~----~~~~sksCP~CRv~s~~v~pS~  227 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF----ESKTSKSCPFCRVPSSFVNPSS  227 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc----ccccccCCCcccCccccccccc
Confidence            55678999999988877     6   679999999999999433311    2233578999999998776553

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.11  E-value=0.00044  Score=51.57  Aligned_cols=51  Identities=22%  Similarity=0.140  Sum_probs=38.7

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeee
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVA  381 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~  381 (460)
                      ...|.|+.+-..+++..||||.++..|...|...          ....||+||.+++....
T Consensus         4 ~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~----------~~~~~P~t~~~l~~~~l   54 (73)
T PF04564_consen    4 EFLCPITGELMRDPVILPSGHTYERSAIERWLEQ----------NGGTDPFTRQPLSESDL   54 (73)
T ss_dssp             GGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT----------TSSB-TTT-SB-SGGGS
T ss_pred             ccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc----------CCCCCCCCCCcCCcccc
Confidence            4579999999999999999999999999999544          34889999999876433

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00022  Score=69.59  Aligned_cols=44  Identities=32%  Similarity=0.723  Sum_probs=38.1

Q ss_pred             CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccc
Q 012618          320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRC  374 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~  374 (460)
                      +...|.||++.+..+..+||||.||..|...+..           ....||.||.
T Consensus        12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-----------~~~~Cp~cr~   55 (386)
T KOG2177|consen   12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-----------GPLSCPVCRP   55 (386)
T ss_pred             ccccChhhHHHhhcCccccccchHhHHHHHHhcC-----------CCcCCcccCC
Confidence            4567999999999999999999999999988843           3378999994

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.05  E-value=0.00055  Score=51.58  Aligned_cols=35  Identities=26%  Similarity=0.603  Sum_probs=26.8

Q ss_pred             cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          334 IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       334 ~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      ++.-.|+|.|-..|+.+|-.        .......||+||++.
T Consensus        47 lv~g~C~H~FH~hCI~kWl~--------~~~~~~~CPmCR~~w   81 (85)
T PF12861_consen   47 LVWGKCSHNFHMHCILKWLS--------TQSSKGQCPMCRQPW   81 (85)
T ss_pred             eeeccCccHHHHHHHHHHHc--------cccCCCCCCCcCCee
Confidence            45557999999999999933        223347899999975

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.00016  Score=75.35  Aligned_cols=52  Identities=23%  Similarity=0.592  Sum_probs=42.4

Q ss_pred             CCCCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          316 SEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       316 ~~~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      .+....-.|.+|.+++.+.+..-|||.||..|.....          ..+.+.||.|-..-.
T Consensus       638 k~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~----------etRqRKCP~Cn~aFg  689 (698)
T KOG0978|consen  638 KEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRY----------ETRQRKCPKCNAAFG  689 (698)
T ss_pred             HHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHH----------HHhcCCCCCCCCCCC
Confidence            3445566899999999999999999999999997773          334488999988753

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.00032  Score=73.48  Aligned_cols=48  Identities=33%  Similarity=0.713  Sum_probs=41.2

Q ss_pred             CCCccCcccccCCCc-----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          319 SDVELCCICFENLCT-----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~-----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      .....|.||.+....     +..+||||.||..|...|....           ..||+||..+.
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-----------qtCP~CR~~~~  341 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-----------QTCPTCRTVLY  341 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-----------CcCCcchhhhh
Confidence            345789999999888     7889999999999999997665           78999999443

>smart00248 ANK ankyrin repeats

Probab=96.86  E-value=0.0019  Score=37.37  Aligned_cols=27  Identities=56%  Similarity=0.836  Sum_probs=17.9

Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCC
Q 012618          198 GSTPLHFAARGGSLECIRELLAWGADR  224 (460)
Q Consensus       198 g~TpLh~A~~~g~~~~v~~Ll~~gad~  224 (460)
                      |.||||+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456677776667777777776666654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.73  E-value=0.00059  Score=48.18  Aligned_cols=42  Identities=29%  Similarity=0.699  Sum_probs=21.1

Q ss_pred             ccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          322 ELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      ..|.+|.+-...++. ..|.|.||..|...-           .  ...||+|+.+-
T Consensus         8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~-----------~--~~~CPvC~~Pa   50 (65)
T PF14835_consen    8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDC-----------I--GSECPVCHTPA   50 (65)
T ss_dssp             TS-SSS-S--SS-B---SSS--B-TTTGGGG-----------T--TTB-SSS--B-
T ss_pred             cCCcHHHHHhcCCceeccCccHHHHHHhHHh-----------c--CCCCCCcCChH
Confidence            469999999999875 689999999999221           1  14599999884

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.00093  Score=65.97  Aligned_cols=50  Identities=30%  Similarity=0.759  Sum_probs=41.0

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ...-.|.||++....++..||||.+|..|..+...           ....||.||.++...
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-----------~~~~cp~Cr~~l~e~  131 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-----------QETECPLCRDELVEL  131 (398)
T ss_pred             cchhhhhhhHhhcCCCccccccccccHHHHHHHhc-----------cCCCCcccccccccc
Confidence            34456999999999999999999999999887422           227799999998753

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.48  E-value=0.00097  Score=57.65  Aligned_cols=51  Identities=22%  Similarity=0.485  Sum_probs=41.9

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA  382 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~  382 (460)
                      ...|.||......+++..|||.||..|+.+-..           ..+.|-+|-....+.+.+
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~-----------kg~~C~~Cgk~t~G~f~V  246 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQ-----------KGDECGVCGKATYGRFWV  246 (259)
T ss_pred             ceeehhchhhccchhhhhcchhHHHHHHHHHhc-----------cCCcceecchhhccceeH
Confidence            357999999999999999999999999966533           338899999887666544

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=96.47  E-value=0.0045  Score=52.10  Aligned_cols=62  Identities=21%  Similarity=0.400  Sum_probs=42.4

Q ss_pred             ccCcccccCCCccEecCC-------CCccch------hhHHHHhhcCCCCccc--------------------CCCCCCC
Q 012618          322 ELCCICFENLCTIEIKPC-------GHQMCA------HCTLALCCHKKPDIIT--------------------AVPEVPA  368 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~C-------gH~~C~------~C~~~~~~~~~~~~~~--------------------~~~~~~~  368 (460)
                      -.|.|||+.+-+.|++-|       .-.+|.      .|+.+.+.-.......                    .......
T Consensus         3 ~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~   82 (162)
T PF07800_consen    3 VTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPELA   82 (162)
T ss_pred             ccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccccc
Confidence            469999999999999844       445553      5777765432222111                    1123468


Q ss_pred             CcccccccceeeeEe
Q 012618          369 CPFCRCSIANLVAAR  383 (460)
Q Consensus       369 CP~Cr~~i~~~~~~~  383 (460)
                      ||+||..|.++.++.
T Consensus        83 CPLCRG~V~GWtvve   97 (162)
T PF07800_consen   83 CPLCRGEVKGWTVVE   97 (162)
T ss_pred             CccccCceeceEEch
Confidence            999999999999986

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.36  E-value=0.0052  Score=60.86  Aligned_cols=66  Identities=23%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             CCHHHHHHHHHcCCCcccccC----CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618           22 GDLQMIEAMVEADPTVLGMTS----GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA   90 (460)
Q Consensus        22 g~~~~vk~Ll~~~~~~~~~~~----~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~   90 (460)
                      .-.+.|++|.+++.+.+...+    ++.--|+||+|+..|.-++|.+||+.   |+|+-.+|..|.||..++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee---g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE---GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh---cCCchhcccCCCCcccccc
Confidence            345677778777766543322    22345888888888888888888888   8888888888888888776

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.0015  Score=60.43  Aligned_cols=50  Identities=22%  Similarity=0.493  Sum_probs=41.5

Q ss_pred             ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618          322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA  382 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~  382 (460)
                      ..|-||-..+.++++..|||.||..|+..-.           .....|++|-+.+.+.+-+
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~-----------qk~~~c~vC~~~t~g~~~~  291 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPY-----------QKGEKCYVCSQQTHGSFNV  291 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhcccc-----------ccCCcceecccccccccch
Confidence            4599999999999999999999999995543           3337899999998776543

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.19  E-value=0.027  Score=48.96  Aligned_cols=138  Identities=17%  Similarity=0.058  Sum_probs=87.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCC
Q 012618           84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT  163 (460)
Q Consensus        84 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t  163 (460)
                      -.|..|++.+...+++..-+...+-    -...++.+..|++..+.++|+|+-+.-..                 .+-.+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i-----------------~~~~~  106 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI-----------------YNPED  106 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC-----------------CCchh
Confidence            4566777777777777765543211    12456777778888888888888433221                 22334


Q ss_pred             HHHHHHHcCCHHHHH----HHHHcCCccccCCCCCCC--CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 012618          164 PLHLAARQGWSECVH----TLLDNGALACSSTGGNGY--PGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI  237 (460)
Q Consensus       164 ~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~~d~--~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~  237 (460)
                      .+..|....+.++..    +++++...    ....|.  --..-|.+|+..|-+..+...|++|.+++.      ++|..
T Consensus       107 iFdIA~~~kDlsLyslGY~l~~~~~~~----~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~  176 (192)
T PF03158_consen  107 IFDIAFAKKDLSLYSLGYKLLFNRMMS----EHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQ  176 (192)
T ss_pred             hhhhhhhccchhHHHHHHHHHHhhccc----ccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHH
Confidence            556666666665422    22232220    000000  001246789999999999999999988864      78999


Q ss_pred             HHHhChHHHHHhhCC
Q 012618          238 ALKYKHQACAALLNP  252 (460)
Q Consensus       238 A~~~~~~~i~~~Ll~  252 (460)
                      |+++++..++.+++.
T Consensus       177 Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  177 AVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHhhHHHHHHHhhc
Confidence            999999999988764

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=96.16  E-value=0.0087  Score=34.37  Aligned_cols=18  Identities=56%  Similarity=0.879  Sum_probs=6.4

Q ss_pred             HHHHHHHcCcHHHHHHHH
Q 012618           49 ALHLAAAYGQIEVLSMLL   66 (460)
Q Consensus        49 ~Lh~A~~~g~~~iv~~Ll   66 (460)
                      |||+|+..++.++++.|+
T Consensus         5 ~l~~~~~~~~~~~~~~ll   22 (30)
T smart00248        5 PLHLAAENGNLEVVKLLL   22 (30)
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            333333333333333333

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.06  E-value=0.0033  Score=56.90  Aligned_cols=42  Identities=31%  Similarity=0.720  Sum_probs=29.9

Q ss_pred             ccCcccccCCCccE--ecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          322 ELCCICFENLCTIE--IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       322 ~~C~iC~~~~~~~~--~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      --|-.|...+....  .+.|+|+||..|...             .....||+||.+|
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~-------------~~~~~C~lCkk~i   47 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKA-------------SSPDVCPLCKKSI   47 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhccc-------------CCcccccccccee
Confidence            34777776555433  368999999999822             2334899999994

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.96  E-value=0.056  Score=48.48  Aligned_cols=48  Identities=23%  Similarity=0.207  Sum_probs=23.9

Q ss_pred             HHHHHHHHHcCC-ccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 012618          174 SECVHTLLDNGA-LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA  222 (460)
Q Consensus       174 ~~~v~~Ll~~ga-~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga  222 (460)
                      ..+++++|++|. ++|.... +-..|.|-|.-|++.++.+++.+||++||
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~-~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQ-KVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHHhccccccchhhh-ccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            445555555553 2222111 12245556666666666666666666555

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.95  E-value=0.042  Score=49.28  Aligned_cols=47  Identities=23%  Similarity=0.246  Sum_probs=40.9

Q ss_pred             CCHHHHHHHHHcC-CCCCC---CCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618          209 GSLECIRELLAWG-ADRVQ---PDAFGRIPYAIALKYKHQACAALLNPSSA  255 (460)
Q Consensus       209 g~~~~v~~Ll~~g-ad~~~---~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga  255 (460)
                      .+..+++++|++| +++|.   .-..|.|-|.-|+++++.+++.+|+++||
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            3578899999998 67765   35679999999999999999999999998

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.82  E-value=0.0084  Score=62.33  Aligned_cols=52  Identities=17%  Similarity=0.344  Sum_probs=39.0

Q ss_pred             cCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeec
Q 012618          323 LCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARII  385 (460)
Q Consensus       323 ~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~  385 (460)
                      .|.+|+....+   ..-.+|+|.||..|...||...           ..||+||....++++..+-
T Consensus       125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-----------qTCPiDR~EF~~v~V~eS~  179 (1134)
T KOG0825|consen  125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-----------QTCPVDRGEFGEVKVLEST  179 (1134)
T ss_pred             hhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-----------ccCchhhhhhheeeeeccc
Confidence            45555443333   2224899999999999998776           7899999999988888763

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.44  E-value=0.0015  Score=61.86  Aligned_cols=53  Identities=28%  Similarity=0.572  Sum_probs=41.6

Q ss_pred             ccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          322 ELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      ..|.||++-...... ..|+|.||..|+..-.          ......||.||+...+-.-++.
T Consensus        44 v~c~icl~llk~tmttkeClhrfc~~ci~~a~----------r~gn~ecptcRk~l~SkrsLr~   97 (381)
T KOG0311|consen   44 VICPICLSLLKKTMTTKECLHRFCFDCIWKAL----------RSGNNECPTCRKKLVSKRSLRI   97 (381)
T ss_pred             hccHHHHHHHHhhcccHHHHHHHHHHHHHHHH----------HhcCCCCchHHhhccccccCCC
Confidence            469999998776555 5799999999996652          2334789999999988777765

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=95.35  E-value=0.0093  Score=56.89  Aligned_cols=48  Identities=33%  Similarity=0.780  Sum_probs=38.9

Q ss_pred             CCCCCccCcccccCCCccEecCC--CCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          317 EASDVELCCICFENLCTIEIKPC--GHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       317 ~~~~~~~C~iC~~~~~~~~~~~C--gH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ...+...|.||++...-+.+. |  ||+.|..|...+              ...||+||.+|..+
T Consensus        44 ~~~~lleCPvC~~~l~~Pi~Q-C~nGHlaCssC~~~~--------------~~~CP~Cr~~~g~~   93 (299)
T KOG3002|consen   44 LDLDLLDCPVCFNPLSPPIFQ-CDNGHLACSSCRTKV--------------SNKCPTCRLPIGNI   93 (299)
T ss_pred             cchhhccCchhhccCccccee-cCCCcEehhhhhhhh--------------cccCCccccccccH
Confidence            344566799999999999887 7  899999998444              27899999999743

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.30  E-value=0.0062  Score=55.48  Aligned_cols=49  Identities=20%  Similarity=0.600  Sum_probs=38.6

Q ss_pred             CCccCcccccCCCccE----------ecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          320 DVELCCICFENLCTIE----------IKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~----------~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      +...|.||-.+.-..+          -+.|+|.|-.-|...||--.|         .++||+|+..|+
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK---------kqtCPYCKekVd  281 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK---------KQTCPYCKEKVD  281 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC---------CCCCchHHHHhh
Confidence            3467999987665433          578999999999999986653         378999999875

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.25  E-value=0.0089  Score=59.01  Aligned_cols=50  Identities=28%  Similarity=0.696  Sum_probs=36.9

Q ss_pred             CCCCccCcccccCCC-----------------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          318 ASDVELCCICFENLC-----------------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~-----------------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      .++...|.|||....                 +-.+.||.|.+-..|.+.|...-|          -.||+||+++-
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk----------l~CPvCR~pLP  634 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK----------LICPVCRCPLP  634 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc----------ccCCccCCCCC
Confidence            445567999996432                 234469999999999999955332          57999999874

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.23  E-value=0.068  Score=49.21  Aligned_cols=54  Identities=22%  Similarity=0.472  Sum_probs=40.9

Q ss_pred             CCCCccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618          318 ASDVELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV  380 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~  380 (460)
                      .+...+|.+|.+.+..+.. .+|||.+|.-|+..-|-.+         ..-.||.|-.+...+-
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~---------asf~Cp~Cg~~~~~lq  290 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD---------ASFTCPLCGENVEPLQ  290 (298)
T ss_pred             ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch---------hhcccCccCCCCcchh
Confidence            3445679999999988777 5699999999996664333         2257999998876543

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.93  E-value=0.52  Score=41.18  Aligned_cols=140  Identities=15%  Similarity=0.101  Sum_probs=94.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG  127 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  127 (460)
                      -.|..|+..+.+.|++..-+.   ..+-   -...++.+-.||+..+.|+|+|+-..   . ..  .+-.+.+..|....
T Consensus        48 CLl~HAVk~nmL~ILqkyke~---L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L-~i--~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKED---LENE---RYLNQELFELACEEQKYDIVKWIGQN---L-HI--YNPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHH---hhcc---hhHHHHHHHHHHHHccccHHHHHhhc---c-CC--CCchhhhhhhhhcc
Confidence            467889999999999888775   2111   13467888899999999999999332   2 22  23456778888888


Q ss_pred             CHHHHH----HHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHH
Q 012618          128 HSDCLQ----ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH  203 (460)
Q Consensus       128 ~~~iv~----~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh  203 (460)
                      +.++..    ++++.....   ..      .+ .+.--..-|..|+..|-...+.-.|++|.+++          .+.|.
T Consensus       116 DlsLyslGY~l~~~~~~~~---~~------~d-~~~ll~~hl~~a~~kgll~F~letlkygg~~~----------~~vls  175 (192)
T PF03158_consen  116 DLSLYSLGYKLLFNRMMSE---HN------ED-PTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD----------IIVLS  175 (192)
T ss_pred             chhHHHHHHHHHHhhcccc---cc------cC-HHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc----------HHHHH
Confidence            876632    222221110   00      00 00000134778999999999999999998332          28999


Q ss_pred             HHHhcCCHHHHHHHHH
Q 012618          204 FAARGGSLECIRELLA  219 (460)
Q Consensus       204 ~A~~~g~~~~v~~Ll~  219 (460)
                      .|+..++..++.+++.
T Consensus       176 ~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  176 QAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHhhHHHHHHHhhc
Confidence            9999999999998874

These proteins may be involved in promoting survival of infected macrophages [].

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.72  E-value=0.014  Score=61.95  Aligned_cols=51  Identities=27%  Similarity=0.628  Sum_probs=38.7

Q ss_pred             CCCccCccccc-------CCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFE-------NLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~-------~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      +-.++|.||..       ......+--|.|.|-.+|.-+|-         +......||+||++|+-
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf---------~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWF---------ASSARSNCPLCRSEITF 1524 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHH---------HhcCCCCCCcccccccc
Confidence            44678999984       33456666799999999999993         33345789999998863

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=94.63  E-value=0.024  Score=55.62  Aligned_cols=47  Identities=23%  Similarity=0.650  Sum_probs=34.6

Q ss_pred             CCCCccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          318 ASDVELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      -.+...|.||+++.-.    +...+|.|.|-..|...|-             -..||+||---.
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~-------------~~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW-------------DSSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc-------------cCcChhhhhhcC
Confidence            3456789999988755    3557899999558998881             156888886544

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=93.81  E-value=0.056  Score=36.14  Aligned_cols=28  Identities=36%  Similarity=0.760  Sum_probs=14.9

Q ss_pred             CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618          338 PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS  375 (460)
Q Consensus       338 ~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~  375 (460)
                      +||.++|..|+...-.          .....||-||.+
T Consensus        19 ~Cgf~IC~~C~~~i~~----------~~~g~CPgCr~~   46 (48)
T PF14570_consen   19 ECGFQICRFCYHDILE----------NEGGRCPGCREP   46 (48)
T ss_dssp             TTS----HHHHHHHTT----------SS-SB-TTT--B
T ss_pred             cCCCcHHHHHHHHHHh----------ccCCCCCCCCCC
Confidence            5788999999988821          223789999986

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=93.70  E-value=0.023  Score=41.85  Aligned_cols=56  Identities=20%  Similarity=0.497  Sum_probs=24.7

Q ss_pred             ccCcccccCCC------ccEec--CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          322 ELCCICFENLC------TIEIK--PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       322 ~~C~iC~~~~~------~~~~~--~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      ..|.||+...-      +.+..  .|+..+-..|+..|-...........+....||+|+++|+
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            45999997643      23333  6888888899988865432222122233357999999985

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.47  E-value=0.035  Score=53.92  Aligned_cols=51  Identities=27%  Similarity=0.656  Sum_probs=35.9

Q ss_pred             ccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618          322 ELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS  375 (460)
Q Consensus       322 ~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~  375 (460)
                      ..|.||++....   +.++||+|++|..|+...-.....   ........||-|.-+
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~---eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQ---EGQVSCLKCPDPKCG  238 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhh---cceeeeecCCCCCCc
Confidence            459999987655   777999999999999877333211   122344678887654

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=93.44  E-value=0.053  Score=44.23  Aligned_cols=49  Identities=29%  Similarity=0.596  Sum_probs=39.6

Q ss_pred             CccCcccccCCCccEec----CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          321 VELCCICFENLCTIEIK----PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~----~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      .-.|.||.+...+..|+    -||=.+|..|...+..+...-        +.||+|+..-+
T Consensus        80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~y--------pvCPvCkTSFK  132 (140)
T PF05290_consen   80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLY--------PVCPVCKTSFK  132 (140)
T ss_pred             ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccC--------CCCCccccccc
Confidence            34699999998888775    588888999999987776543        89999998754

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.23  E-value=0.039  Score=58.77  Aligned_cols=51  Identities=29%  Similarity=0.716  Sum_probs=39.1

Q ss_pred             ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618          322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA  382 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~  382 (460)
                      ..|.+|++ ....+..+|||.+|..|....        .+.... ..||+||..+.....+
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~--------i~~~~~-~~~~~cr~~l~~~~l~  505 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKS--------IQQSEN-APCPLCRNVLKEKKLL  505 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhc--------cccccC-CCCcHHHHHHHHHHHh
Confidence            67999999 777888899999999999666        222222 3799999998654443

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.03  E-value=0.11  Score=49.04  Aligned_cols=59  Identities=15%  Similarity=0.313  Sum_probs=44.9

Q ss_pred             CCccCcccccCC----CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeecCCccc
Q 012618          320 DVELCCICFENL----CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIINSATE  390 (460)
Q Consensus       320 ~~~~C~iC~~~~----~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~~~~~~  390 (460)
                      ....|.|.....    ..+.+.||||+|+..++..+.            ....||+|-.+.+..-+|.+.+..++
T Consensus       112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k------------~~~~Cp~c~~~f~~~DiI~Lnp~~ee  174 (260)
T PF04641_consen  112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK------------KSKKCPVCGKPFTEEDIIPLNPPEEE  174 (260)
T ss_pred             ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc------------ccccccccCCccccCCEEEecCCccH
Confidence            345799988665    346667999999999998881            12569999999998888888665443

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=92.91  E-value=0.088  Score=35.69  Aligned_cols=42  Identities=19%  Similarity=0.552  Sum_probs=31.1

Q ss_pred             cCccccc--CCCccEecCCC-----CccchhhHHHHhhcCCCCcccCCCCCCCCcccc
Q 012618          323 LCCICFE--NLCTIEIKPCG-----HQMCAHCTLALCCHKKPDIITAVPEVPACPFCR  373 (460)
Q Consensus       323 ~C~iC~~--~~~~~~~~~Cg-----H~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr  373 (460)
                      .|.||++  ...+....||.     |.+=..|..+|...+.         ...||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~---------~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG---------NKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC---------CCcCCCCC
Confidence            4899997  55566678995     6778999999954442         25899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=92.89  E-value=0.054  Score=54.23  Aligned_cols=54  Identities=30%  Similarity=0.632  Sum_probs=43.1

Q ss_pred             CCCccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618          319 SDVELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR  383 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~  383 (460)
                      .+...|.+|.....++.. ..|||.||..|...+-..           ...||.||.++...-.+.
T Consensus        19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-----------~~~cp~~~~~~~~~~~~~   73 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-----------HQKCPVCRQELTQAEELP   73 (391)
T ss_pred             cccccCccccccccCCCCCCCCCCcccccccchhhcc-----------CcCCcccccccchhhccC
Confidence            344679999999999999 499999999999777211           478999999987655554

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=92.87  E-value=0.063  Score=50.64  Aligned_cols=55  Identities=24%  Similarity=0.576  Sum_probs=36.4

Q ss_pred             CCccCcccccCC--CccEec--CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          320 DVELCCICFENL--CTIEIK--PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       320 ~~~~C~iC~~~~--~~~~~~--~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      +...|..|++..  .+..|.  |||-++|+-|+..+-..          -...||.||..-+.--+-..
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~----------lngrcpacrr~y~denv~~~   71 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN----------LNGRCPACRRKYDDENVRYV   71 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh----------ccCCChHhhhhccccceeEE
Confidence            445599999864  344554  56778899999776211          12679999998855444333

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.68  E-value=0.11  Score=47.00  Aligned_cols=54  Identities=15%  Similarity=0.280  Sum_probs=43.9

Q ss_pred             CCccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          320 DVELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       320 ~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      ..-.|.||-+...+    .++.||||++|..|.+.+....           ..||+|-.+.+.--.|.+
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-----------~v~pv~d~plkdrdiI~L  277 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-----------MVDPVTDKPLKDRDIIGL  277 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-----------ccccCCCCcCcccceEee
Confidence            45689999987776    4567999999999999995554           789999999877666665

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=92.59  E-value=0.097  Score=52.38  Aligned_cols=58  Identities=17%  Similarity=0.405  Sum_probs=42.9

Q ss_pred             CCCCCCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          314 NTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       314 ~~~~~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      ...+......|.+|-+...+.+...|.|.||.-|....--.      ........||.|-.+.+
T Consensus       529 ~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~------f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  529 LPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVES------FMENNNVTCPVCHIGLS  586 (791)
T ss_pred             CCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHh------hhcccCCCCcccccccc
Confidence            34445556789999999999999999999999999655111      12233388999987754

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.55  E-value=0.071  Score=51.36  Aligned_cols=44  Identities=25%  Similarity=0.648  Sum_probs=32.1

Q ss_pred             ccCcccccCCCc---cEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCcccc
Q 012618          322 ELCCICFENLCT---IEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCR  373 (460)
Q Consensus       322 ~~C~iC~~~~~~---~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr  373 (460)
                      -+|.||-+-...   ..... |||.|-..|...|        ....|..+.||+||
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qw--------fe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQW--------FEGDPSNRGCPICQ   52 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHH--------HccCCccCCCCcee
Confidence            469999765544   33333 9999999999999        33444447899999

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.52  E-value=0.087  Score=50.87  Aligned_cols=45  Identities=33%  Similarity=0.800  Sum_probs=34.6

Q ss_pred             ccCcccccCCCc------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          322 ELCCICFENLCT------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       322 ~~C~iC~~~~~~------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      ..|.||-+.+..      +..+.|||.+|..|+-.+....          ...||+||.+.
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~----------~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS----------RILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc----------eeeccCCCCcc
Confidence            458888766655      4556799999999998884443          37799999996

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=91.74  E-value=0.12  Score=48.06  Aligned_cols=44  Identities=23%  Similarity=0.640  Sum_probs=31.0

Q ss_pred             cCcccccCC---CccEe--cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          323 LCCICFENL---CTIEI--KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       323 ~C~iC~~~~---~~~~~--~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      .|.+|....   .++++  -||||.+|..|...+          ...+.-.||-|-...
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~i----------F~~g~~~CpeC~~iL   50 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRI----------FSLGPAQCPECMVIL   50 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHH----------HhcCCCCCCcccchh
Confidence            366666433   23333  499999999999888          455567899997654

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.00  E-value=0.097  Score=48.88  Aligned_cols=45  Identities=22%  Similarity=0.608  Sum_probs=31.5

Q ss_pred             ccCcccccCCCc-cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          322 ELCCICFENLCT-IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       322 ~~C~iC~~~~~~-~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ..|..|--.... -.+.||.|+||..|+...             ..+.||.|-..|-++
T Consensus        91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~-------------~dK~Cp~C~d~VqrI  136 (389)
T KOG2932|consen   91 HFCDRCDFPIAIYGRMIPCKHVFCLECARSD-------------SDKICPLCDDRVQRI  136 (389)
T ss_pred             EeecccCCcceeeecccccchhhhhhhhhcC-------------ccccCcCcccHHHHH
Confidence            467778554433 344799999999999443             236899998887543

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.30  E-value=0.48  Score=35.44  Aligned_cols=47  Identities=23%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIES  104 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  104 (460)
                      .-|..|+..|+.|+++.+++.   + .++      ...|..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~---~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKK---N-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHH---h-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            456777777777777777764   2 111      3467777777777777777775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.25  E-value=0.57  Score=35.00  Aligned_cols=48  Identities=17%  Similarity=0.269  Sum_probs=40.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhc
Q 012618           12 ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ   68 (460)
Q Consensus        12 ~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~   68 (460)
                      ..-|..|+..|+.|+++.+++.+ .+.        ...|..|+..-+.+++++|+++
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34689999999999999999866 221        2579999999999999999997

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A

Probab=89.73  E-value=0.2  Score=36.84  Aligned_cols=50  Identities=18%  Similarity=0.498  Sum_probs=21.6

Q ss_pred             CCccCcccccCCCc-------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          320 DVELCCICFENLCT-------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       320 ~~~~C~iC~~~~~~-------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ..+.|.||-+....       +++..|+-.+|..|+..-          .......||-|+++-++.
T Consensus         8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYE----------rkeg~q~CpqCkt~ykr~   64 (80)
T PF14569_consen    8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYE----------RKEGNQVCPQCKTRYKRH   64 (80)
T ss_dssp             SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHH----------HHTS-SB-TTT--B----
T ss_pred             CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHH----------hhcCcccccccCCCcccc
Confidence            45789999876543       455678888899999877          334458899999765543

>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ]

Probab=89.62  E-value=0.1  Score=50.74  Aligned_cols=51  Identities=24%  Similarity=0.371  Sum_probs=0.0

Q ss_pred             CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce---eeeEee
Q 012618          332 CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN---LVAARI  384 (460)
Q Consensus       332 ~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~---~~~~~~  384 (460)
                      .+.+|.||||++=.+.+..|+....|....  .=...||||-.++..   ++++.|
T Consensus       358 pthaF~PCGHv~SekTa~yWs~i~lPhGt~--~f~a~CPFCa~~L~g~~g~vrLiF  411 (416)
T PF04710_consen  358 PTHAFNPCGHVCSEKTAKYWSQIPLPHGTH--AFHAACPFCATPLDGEQGYVRLIF  411 (416)
T ss_dssp             --------------------------------------------------------
T ss_pred             CceeecccccccchhhhhhhhcCCCCCCcc--cccccCCcccCcccCCCCceEEEE
Confidence            446778999988888888997666554321  223689999999975   566555

; PDB: 3EGB_B 3EGA_A.

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=89.40  E-value=0.15  Score=45.92  Aligned_cols=46  Identities=28%  Similarity=0.622  Sum_probs=33.2

Q ss_pred             CCccCcccccCC---CccEe--cC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCc--ccccc
Q 012618          320 DVELCCICFENL---CTIEI--KP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACP--FCRCS  375 (460)
Q Consensus       320 ~~~~C~iC~~~~---~~~~~--~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP--~Cr~~  375 (460)
                      ....|.+|....   .++++  -| |-|.+|.+|..++          ...++..||  -|-.-
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRI----------Fs~GpAqCP~~gC~kI   62 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRI----------FSRGPAQCPYKGCGKI   62 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHH----------hcCCCCCCCCccHHHH
Confidence            445799998643   33444  36 9999999999998          445567899  67654

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.07  E-value=0.14  Score=37.39  Aligned_cols=31  Identities=32%  Similarity=0.705  Sum_probs=23.4

Q ss_pred             CCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          338 PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       338 ~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      -|.|.|-..|...|        .....+...||+||+.-
T Consensus        50 ~C~h~fh~hCI~~w--------l~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   50 YCLHAFHAHCILKW--------LNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             HHHHHHHHHHHHHH--------hcCccccccCCcchhee
Confidence            58888888888888        34445557899999863

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=88.21  E-value=0.66  Score=32.51  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=28.8

Q ss_pred             CCccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcc
Q 012618          320 DVELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPF  371 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~  371 (460)
                      ....|.|.+..+.+++. ..|||.|....+..+-         .......||+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i---------~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYI---------QRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHC---------TTTS-EE-SC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHH---------HhcCCCCCCC
Confidence            34679999999999888 5899999999999994         2234478998

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=88.08  E-value=0.56  Score=51.93  Aligned_cols=52  Identities=19%  Similarity=0.447  Sum_probs=40.8

Q ss_pred             CCCccCcccccCC-------CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618          319 SDVELCCICFENL-------CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV  380 (460)
Q Consensus       319 ~~~~~C~iC~~~~-------~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~  380 (460)
                      ...+.|.||-|..       ..+++..||=.+|..|++.-          .......||-|+..-++..
T Consensus        15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYE----------r~eG~q~CPqCktrYkr~k   73 (1079)
T PLN02638         15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYE----------RKDGNQSCPQCKTKYKRHK   73 (1079)
T ss_pred             cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhh----------hhcCCccCCccCCchhhhc
Confidence            3556899999874       33777789989999999766          4556688999999987655

>PLN02436 cellulose synthase A

Probab=87.41  E-value=0.41  Score=52.77  Aligned_cols=52  Identities=19%  Similarity=0.447  Sum_probs=40.6

Q ss_pred             CCCccCcccccCC-------CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618          319 SDVELCCICFENL-------CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV  380 (460)
Q Consensus       319 ~~~~~C~iC~~~~-------~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~  380 (460)
                      ...+.|.||-|..       ..+++-.|+=.+|..|++.-          .......||-|++.-++..
T Consensus        34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeye----------r~eg~~~Cpqckt~Y~r~k   92 (1094)
T PLN02436         34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYE----------RREGNQACPQCKTRYKRIK   92 (1094)
T ss_pred             cCCccccccccccCcCCCCCEEEeeccCCCccccchhhhh----------hhcCCccCcccCCchhhcc
Confidence            3456899999885       33677788888999999666          4556688999999987654

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.66  E-value=0.46  Score=46.37  Aligned_cols=47  Identities=30%  Similarity=0.600  Sum_probs=36.5

Q ss_pred             CccCcccccCCCc-----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          321 VELCCICFENLCT-----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       321 ~~~C~iC~~~~~~-----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      ...|.||+|....     ++.+-|||.|=..|.++|.. ++.        ...||.|...-
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~~--------~~~cp~c~~ka   55 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KKT--------KMQCPLCSGKA   55 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hhh--------hhhCcccCChh
Confidence            4679999987654     56678999999999999963 322        27899998764

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=86.18  E-value=0.76  Score=33.95  Aligned_cols=44  Identities=25%  Similarity=0.501  Sum_probs=31.2

Q ss_pred             ccCccccc-----CCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          322 ELCCICFE-----NLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       322 ~~C~iC~~-----~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      +.|.-|..     ..+.++.--|.|.|-..|..+|..+.           ..||++|++-
T Consensus        32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-----------~~CPld~q~w   80 (88)
T COG5194          32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-----------GVCPLDRQTW   80 (88)
T ss_pred             CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-----------CCCCCCCcee
Confidence            34555554     23335555799999999999995443           7899999873

>PLN02189 cellulose synthase

Probab=85.82  E-value=0.63  Score=51.32  Aligned_cols=52  Identities=23%  Similarity=0.540  Sum_probs=39.6

Q ss_pred             CCCccCcccccCCC-------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618          319 SDVELCCICFENLC-------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV  380 (460)
Q Consensus       319 ~~~~~C~iC~~~~~-------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~  380 (460)
                      ...+.|.||.|...       .+++..|+=.+|..|++.-          .......||-|++.-++..
T Consensus        32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeye----------r~eg~q~CpqCkt~Y~r~k   90 (1040)
T PLN02189         32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE----------RREGTQNCPQCKTRYKRLK   90 (1040)
T ss_pred             ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhh----------hhcCCccCcccCCchhhcc
Confidence            34568999998743       3566678888899999766          4555688999999987654

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=85.28  E-value=1  Score=42.74  Aligned_cols=52  Identities=17%  Similarity=0.422  Sum_probs=35.8

Q ss_pred             CCCCCCCCccCcccccCCCccEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          314 NTSEASDVELCCICFENLCTIEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       314 ~~~~~~~~~~C~iC~~~~~~~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      ......+...|.+|+....+..++. =|=+||..|.-..-...           ..||+--.++
T Consensus       293 ~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~-----------~~CPVT~~p~  345 (357)
T KOG0826|consen  293 SELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNY-----------GHCPVTGYPA  345 (357)
T ss_pred             cccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhc-----------CCCCccCCcc
Confidence            3444556788999998777755543 48889999997774433           6688754443

>PLN02400 cellulose synthase

Probab=85.16  E-value=0.63  Score=51.53  Aligned_cols=52  Identities=17%  Similarity=0.464  Sum_probs=40.4

Q ss_pred             CCCccCcccccCCC-------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618          319 SDVELCCICFENLC-------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV  380 (460)
Q Consensus       319 ~~~~~C~iC~~~~~-------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~  380 (460)
                      ...+.|.||-|..-       .+++..|+=.+|..|++.-          .......||-|+..-++.-
T Consensus        34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYE----------RkeGnq~CPQCkTrYkR~K   92 (1085)
T PLN02400         34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYE----------RKDGTQCCPQCKTRYRRHK   92 (1085)
T ss_pred             cCCceeeecccccCcCCCCCEEEEEccCCCccccchhhee----------cccCCccCcccCCcccccc
Confidence            34568999998743       3677788888999999655          5556689999999988664

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=84.86  E-value=0.47  Score=53.18  Aligned_cols=61  Identities=23%  Similarity=0.520  Sum_probs=39.0

Q ss_pred             CCCCCccCcccccCCCc---cEecCCCCccchhhHHHHhh--cCCCCcccCCCCCCCCcccccccceee
Q 012618          317 EASDVELCCICFENLCT---IEIKPCGHQMCAHCTLALCC--HKKPDIITAVPEVPACPFCRCSIANLV  380 (460)
Q Consensus       317 ~~~~~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~--~~~~~~~~~~~~~~~CP~Cr~~i~~~~  380 (460)
                      .+.....|+||+...-.   ...+.|+|.|-.+|..+..-  ++.|..   .-+-..||+|..+|...+
T Consensus      3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRI---tF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRI---TFGFISCPICKNKINHIV 3547 (3738)
T ss_pred             hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCee---EEeeeecccccchhhhHH
Confidence            34455789999975433   44578999997777665521  222221   123367999999996654

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=84.42  E-value=0.5  Score=46.30  Aligned_cols=32  Identities=25%  Similarity=0.594  Sum_probs=28.3

Q ss_pred             CCccCcccccCCCccEecCCCCccchhhHHHH
Q 012618          320 DVELCCICFENLCTIEIKPCGHQMCAHCTLAL  351 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~  351 (460)
                      ++..|.||..-+.++..+||+|-.|..|+...
T Consensus         3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~   34 (699)
T KOG4367|consen    3 EELKCPVCGSFYREPIILPCSHNLCQACARNI   34 (699)
T ss_pred             ccccCceehhhccCceEeecccHHHHHHHHhh
Confidence            34569999999999999999999999999654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=83.77  E-value=0.4  Score=46.37  Aligned_cols=50  Identities=22%  Similarity=0.541  Sum_probs=36.6

Q ss_pred             ccCcccccCC----CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618          322 ELCCICFENL----CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV  380 (460)
Q Consensus       322 ~~C~iC~~~~----~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~  380 (460)
                      ..|..|-+..    .....+||.|.|-.+|+..+--.+         ....||-||+-+.++-
T Consensus       366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n---------~~rsCP~CrklrSs~~  419 (518)
T KOG1941|consen  366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN---------GTRSCPNCRKLRSSMK  419 (518)
T ss_pred             hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC---------CCCCCccHHHHHhhcc
Confidence            4699998643    456778999999999998774333         2378999996665443

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=83.15  E-value=0.33  Score=46.14  Aligned_cols=57  Identities=21%  Similarity=0.406  Sum_probs=42.4

Q ss_pred             CCccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee-eEeecCC
Q 012618          320 DVELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV-AARIINS  387 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~-~~~~~~~  387 (460)
                      ....|.+|..=..+... ..|-|.||..|+...-..+           ..||.|...|-... ..+++.+
T Consensus        14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~-----------~~CP~C~i~ih~t~pl~ni~~D   72 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEES-----------KYCPTCDIVIHKTHPLLNIRSD   72 (331)
T ss_pred             cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHh-----------ccCCccceeccCccccccCCcc
Confidence            34679999887777555 5699999999998774333           78999999997775 3344443

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=82.55  E-value=0.75  Score=38.04  Aligned_cols=32  Identities=25%  Similarity=0.539  Sum_probs=25.8

Q ss_pred             CccCcccccCCCc---cEecCCCC------ccchhhHHHHh
Q 012618          321 VELCCICFENLCT---IEIKPCGH------QMCAHCTLALC  352 (460)
Q Consensus       321 ~~~C~iC~~~~~~---~~~~~CgH------~~C~~C~~~~~  352 (460)
                      ..+|.||++...+   ++..+||-      +||..|..+|-
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence            3569999987665   77788986      66999999993

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit

Probab=81.31  E-value=1.6  Score=48.32  Aligned_cols=51  Identities=20%  Similarity=0.491  Sum_probs=40.0

Q ss_pred             CCccCcccccCCC-------ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618          320 DVELCCICFENLC-------TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV  380 (460)
Q Consensus       320 ~~~~C~iC~~~~~-------~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~  380 (460)
                      ..+.|.||-|...       .+++..|+-.+|..|++.-          .......||-|+++-++..
T Consensus        14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye----------~~~g~~~cp~c~t~y~~~~   71 (1044)
T PLN02915         14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYE----------RSEGNQCCPQCNTRYKRHK   71 (1044)
T ss_pred             CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhh----------hhcCCccCCccCCchhhhc
Confidence            5678999998743       3677788888999999665          4556689999999987654

>PHA03096 p28-like protein; Provisional

Probab=81.18  E-value=0.69  Score=43.96  Aligned_cols=51  Identities=18%  Similarity=0.260  Sum_probs=32.6

Q ss_pred             ccCcccccCCCc--------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          322 ELCCICFENLCT--------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       322 ~~C~iC~~~~~~--------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      ..|.||++....        -....|-|.||..|...|-....     .....+.||.||..+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~-----~~e~~~~c~~~~~~~~  237 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL-----YKETEPENRRLNTVIV  237 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh-----hcccCccccchhhHHH
Confidence            459999986543        23347999999999999944331     1223345555555543

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=80.65  E-value=0.74  Score=36.79  Aligned_cols=30  Identities=27%  Similarity=0.666  Sum_probs=23.7

Q ss_pred             CCCccCcccccCCCccE--ecCCCCccchhhH
Q 012618          319 SDVELCCICFENLCTIE--IKPCGHQMCAHCT  348 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~--~~~CgH~~C~~C~  348 (460)
                      .+...|.+|.....+.+  +.||||.+...|.
T Consensus        76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~  107 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCI  107 (109)
T ss_pred             CCCCCccCcCCcCCCceEEEeCCCeEEecccc
Confidence            34567999999887644  4799999988886

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]

Probab=80.35  E-value=2.1  Score=40.41  Aligned_cols=50  Identities=24%  Similarity=0.413  Sum_probs=29.1

Q ss_pred             ccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc---eeeeEee
Q 012618          333 TIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA---NLVAARI  384 (460)
Q Consensus       333 ~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~---~~~~~~~  384 (460)
                      +..|.||||++=.+=..+|-..-.|  --...=...||||-..+.   .++++-|
T Consensus       372 thaF~PCGHv~sekt~~YWs~iplP--hGT~~f~a~CPFC~~~L~ge~~~ikliF  424 (429)
T KOG3842|consen  372 THAFNPCGHVCSEKTVKYWSQIPLP--HGTHAFHAACPFCATQLAGEQGYIKLIF  424 (429)
T ss_pred             ccccCCcccccchhhhhHhhcCcCC--CccccccccCcchhhhhccCCceEEEEE
Confidence            4567799997666666666222211  111223368999998874   3444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	460
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-21
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-11
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		9e-21
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-19
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-12
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-19
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-19
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-19
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-18
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-18
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-18
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-17
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-16
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-17
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		7e-17
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		9e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-17
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-06
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-16
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		6e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-16
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-13
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-16
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-16
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-15
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-15
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-15
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-14
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-14
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-14
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-13
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		8e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-12
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		3e-12
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		5e-12
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		7e-12
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-10
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		5e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		7e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		3e-09
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		5e-09
1uoh_A	226	Human Gankyrin Length = 226		2e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		7e-08
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		9e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-07
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-07
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-07
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		6e-07
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		9e-07
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-06
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-06
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-06
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		4e-06
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		4e-06
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		4e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		4e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		5e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		5e-06
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		4e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		5e-05
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		6e-06
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		8e-06
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		6e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		7e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		6e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		4e-05
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		4e-05
3vgo_A	394	Crystal Structure Of The N-Terminal Fragment Of Cbl		6e-05
4a4c_A	391	Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Comp		7e-05
4a4b_A	391	Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Za		8e-05
2y1m_A	389	Structure Of Native C-Cbl Length = 389		8e-05
1fbv_A	388	Structure Of A Cbl-Ubch7 Complex: Ring Domain Funct		8e-05
2k4d_A	83	E2-C-Cbl Recognition Is Necessary But Not Sufficien		1e-04
2ldr_A	82	Solution Structure Of Helix-Ring Domain Of Cbl-B In		1e-04
4a49_A	84	Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex Len		1e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		1e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		1e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		7e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		8e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		8e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		9e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 86/165 (52%), Gaps = 17/165 (10%)
Query: 86  LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
           L+ AA NG    VK LIE+GA +   DS  GRT LHYAA  GH + ++ L++        
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHYAAKEGHKEIVKLLISKGAD---- 62
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
                   VN +D  G TPLH AA++G  E V  L+  GA   +        G TPLH+A
Sbjct: 63  --------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD----SDGRTPLHYA 110
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           A+ G  E ++ L++ GAD    D+ GR P  +A ++ ++    LL
Sbjct: 111 AKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           VN  D  G TPLH AA++G  E V  L+  GA   +        G TPLH+AA+ G  E 
Sbjct: 30  VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD----SDGRTPLHYAAKEGHKEI 85
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
           ++ L++ GAD    D+ GR P   A K  H+    LL    A+
Sbjct: 86  VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 86  LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
           L+ AA  G+   V+ L+ +GA + N     G T LH AA  GH + ++ LL A       
Sbjct: 6   LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---- 60
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
                   VN +D+ G TPLHLAAR+G  E V  LL  GA   ++   +GY   TPLH A
Sbjct: 61  --------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGY---TPLHLA 108
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254
           AR G LE +  LL  GAD    D FG+ P+ +A++  H+  A +L  ++
Sbjct: 109 AREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 86  LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
           L+ AA NG    VK L+E+GA +   DS  G+T LH AA  GH + ++ LL+     P  
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDS-DGKTPLHLAAENGHKEVVKLLLSQG-ADP-- 63
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
                    N +D  G TPLHLAA  G  E V  LL  GA   +        G TPLH A
Sbjct: 64  ---------NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD----SDGKTPLHLA 110
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           A  G  E ++ LL+ GAD    D+ GR P  +A ++ ++    LL
Sbjct: 111 AENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           VN  D  G TPLHLAA  G  E V  LL  GA   +        G TPLH AA  G  E 
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD----SDGKTPLHLAAENGHKEV 85
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
           ++ LL+ GAD    D+ G+ P  +A +  H+    LL    A+P
Sbjct: 86  VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP 129

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 86  LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
           L+ AA NG    VK LIE+GA +   DS  GRT LH+AA  GH + ++ L++        
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHHAAENGHKEVVKLLISKGAD---- 62
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
                   VN +D  G TPLH AA  G  E V  L+  GA   +        G TPLH A
Sbjct: 63  --------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD----SDGRTPLHHA 110
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           A  G  E ++ L++ GAD    D+ GR P  +A ++ ++    LL
Sbjct: 111 AENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 86  LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
           L+ AA  G+   V+ L+ +GA + N     G T LH AA  GH + ++ LL A       
Sbjct: 6   LLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---- 60
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
                   VN +D+ G TPLHLAAR+G  E V  LL  GA   ++   +GY   TPLH A
Sbjct: 61  --------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGY---TPLHLA 108
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254
           AR G LE +  LL  GAD    D FG+ P+ +A+   ++  A +L  ++
Sbjct: 109 AREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 86  LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
           L+ AA NG    VK L+E+GA     DS  GRT LHYAA  GH + ++ LL+     P  
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDS-DGRTPLHYAAENGHKEIVKLLLSKG-ADP-- 63
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
                    N +D  G TPLH AA  G  E V  LL  GA   +        G TPLH+A
Sbjct: 64  ---------NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD----SDGRTPLHYA 110
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           A  G  E ++ LL+ GAD    D+ GR P  +A ++ ++    LL
Sbjct: 111 AENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
           N  D  G TPLH AA  G  E V  LL  GA   +        G TPLH+AA  G  E +
Sbjct: 31  NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD----SDGRTPLHYAAENGHKEIV 86
Query: 215 RELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
           + LL+ GAD    D+ GR P   A +  H+    LL    A+P
Sbjct: 87  KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 129

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA + N     G T LH AA++GH + ++ LL        
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                    VN +D  G TPLHLAAR+G  E V  LL NGA   +S       G TPLH 
Sbjct: 73  ---------VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD----SHGFTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA+ G LE +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 85/166 (51%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA + N     G T LH AA  GH + ++ LL A      
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                    VN +D+ G TPLHLAAR+G  E V  LL  GA   ++   +GY   TPLH 
Sbjct: 73  ---------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA-DVNAKDKDGY---TPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AAR G LE +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 82/166 (49%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA +   D + G T LH AAY+GH + ++ LL        
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNASDHV-GWTPLHLAAYFGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                    VN  D  G TPLHLAA +G  E V  LL NGA        N + G TPLH 
Sbjct: 73  ---------VNADDSLGVTPLHLAADRGHLEVVEVLLKNGA----DVNANDHNGFTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA  G LE +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/139 (41%), Positives = 79/139 (56%), Gaps = 16/139 (11%)
Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           ++ LHLAA  G +EV+ +LL+      + +A ++  +TPL +AA NG L  VK L+E+GA
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
            + N     GRT LH AA  GH + ++ LL A               VN +D++G TPLH
Sbjct: 60  DV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNGRTPLH 106
Query: 167 LAARQGWSECVHTLLDNGA 185
           LAAR G  E V  LL+ GA
Sbjct: 107 LAARNGHLEVVKLLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/140 (40%), Positives = 68/140 (48%), Gaps = 16/140 (11%)
Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
           GRT LH AA  GH + ++ LL A               VN +D++G TPLHLAAR G  E
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNGRTPLHLAARNGHLE 49
Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
            V  LL+ GA            G TPLH AAR G LE ++ LL  GAD    D  GR P 
Sbjct: 50  VVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 105
Query: 236 AIALKYKHQACAALLNPSSA 255
            +A +  H     LL  + A
Sbjct: 106 HLAARNGHLEVVKLLLEAGA 125

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA + N +   G T LH AA  GH + ++ LL        
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                    VN  D SG+TPLHLAA++G  E V  LL  GA        +   GSTPLH 
Sbjct: 73  ---------VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGA----DVNADDTIGSTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA  G LE +  LL +GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA + N   + G T LH AAY+GH + ++ LL        
Sbjct: 17  KLLEAARAGRDDEVRILMANGADV-NAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                    VN  D  G+TPLHLAA  G  E V  LL NGA   ++   NG    TPLH 
Sbjct: 73  ---------VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA-DVNAKDDNGI---TPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA  G LE +  LL +GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
           AAR G  + V  L+ NGA   ++       G TPLH AA  G LE +  LL  GAD    
Sbjct: 21  AARAGRDDEVRILMANGADVNAAD----VVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 228 DAFGRIPYAIALKYKHQACAALLNPSSAE 256
           D  G  P  +A  + H     +L  + A+
Sbjct: 77  DTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA +   D L G T LH AA  GH + ++ LL        
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNATDWL-GHTPLHLAAKTGHLEIVEVLLK------- 68
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                +   VN  D  GATPLHLAA  G  E V  LL +GA          Y G TPLH 
Sbjct: 69  -----YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA----DVNAKDYEGFTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA  G LE +  LL +GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
           AAR G  + V  L+ NGA   ++     + G TPLH AA+ G LE +  LL +GAD    
Sbjct: 21  AARAGQDDEVRILMANGADVNATD----WLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 228 DAFGRIPYAIALKYKHQACAALLNPSSAE 256
           D +G  P  +A    H     +L    A+
Sbjct: 77  DNYGATPLHLAADNGHLEIVEVLLKHGAD 105

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA + N +   G+T LH AA  GH + ++ LL        
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                    VN  D+ G TPLHLAA  G  E V  LL NGA   ++T   G+   TPLH 
Sbjct: 73  ---------VNAADKMGDTPLHLAALYGHLEIVEVLLKNGA-DVNATDTYGF---TPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA  G LE +  LL +GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
           AAR G  + V  L+ NGA   +        G TPLH AA  G LE +  LL  GAD    
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDD----SGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 228 DAFGRIPYAIALKYKHQACAALLNPSSAE 256
           D  G  P  +A  Y H     +L  + A+
Sbjct: 77  DKMGDTPLHLAALYGHLEIVEVLLKNGAD 105

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 122/251 (48%), Gaps = 26/251 (10%)
Query: 9   ERSESALFVAVENGDLQMIEAMVEAD--PTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
           ++  + L VA + G +++ E ++E D  P      +G    + LH+A  +  ++++ +LL
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPN----AAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
            +     ++ A N Y  TPL +AA   ++   + L++ G    N +S+QG T LH AA  
Sbjct: 200 PRGG-SPHSPAWNGY--TPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQE 255
Query: 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
           GH++ +  LL     S  AN        N+ ++SG TPLHL A++G       L+ +G +
Sbjct: 256 GHAEMVALLL-----SKQANG-------NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 303
Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
             ++T      G TPLH A+  G+++ ++ LL   AD       G  P   A +  H   
Sbjct: 304 VDATT----RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 359
Query: 247 AALLNPSSAEP 257
             LL  + A P
Sbjct: 360 VTLLLKNGASP 370

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
           TPL VA+  G L  VK L++ GA   N  +++  T LH AA  GH++  + LL       
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-- 72
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
                     VN + +   TPLH AAR G +  V  LL+N A    +T      G TPLH
Sbjct: 73  ----------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA----GHTPLH 118
Query: 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
            AAR G +E +  LL   A +      G  P  +A KY     A LL    A P
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 86  LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
           L+ AA  G+   V+ L+ +GA +   D  QG T LH AA+ GH + ++ LL         
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDD-QGSTPLHLAAWIGHPEIVEVLLKHGAD---- 72
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
                   VN RD  G TPLHLAA  G  E V  LL  GA   +    + Y G TPLH A
Sbjct: 73  --------VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQ---DAY-GLTPLHLA 120
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           A  G LE +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 121 ADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA + N +   G T LH     GH + ++ LL        
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLLK------- 68
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                ++  VN  D+SG TPLHLAA +G  E V  LL  GA          Y G TPLH 
Sbjct: 69  -----YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA----DVNAMDYQGYTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA  G LE +  LL +GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA + N +   G T LH AA+ GH + ++ LL        
Sbjct: 17  KLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                    VN  D +G TPL LAA  G  E V  LL NGA        N   G TPLH 
Sbjct: 73  ---------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA----DVNANDMEGHTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA  G LE +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ LI +GA +   D+  G T LH AA  GH + ++ LL        
Sbjct: 17  KLLEAARAGQDDEVRILIANGADVNAVDN-TGLTPLHLAAVSGHLEIVEVLLKHGADVDA 75
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
           A+ +GF            TPLHLAA  G  E V  LL  GA            GSTPLH 
Sbjct: 76  ADVYGF------------TPLHLAAMTGHLEIVEVLLKYGA----DVNAFDMTGSTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACA 247
           AA  G LE +  LL +GAD    D FG+  + I++   ++  A
Sbjct: 120 AADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLA 162

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA +   D+  G T LH AAY GH + ++ LL        
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAADN-TGTTPLHLAAYSGHLEIVEVLLKHGADVDA 75
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
           ++ +G+            TPLHLAA  G  E V  LL NGA   +        G TPLH 
Sbjct: 76  SDVFGY------------TPLHLAAYWGHLEIVEVLLKNGADVNAMDS----DGMTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA+ G LE +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 81/168 (48%), Gaps = 21/168 (12%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA +   D+  G T LH AA  GH + ++ LL        
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP--GSTPL 202
                    VN  D +G TPLHLAA  G  E V  LL +GA        N Y   G TPL
Sbjct: 73  ---------VNASDLTGITPLHLAAATGHLEIVEVLLKHGADV------NAYDNDGHTPL 117
Query: 203 HFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           H AA+ G LE +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 118 HLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 92/206 (44%), Gaps = 19/206 (9%)
Query: 45  GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIES 104
            K+S LH AA  G +++  ML+       N D  +  ++TPLM AA N  L  VK LI++
Sbjct: 10  NKRSPLHAAAEAGHVDICHMLVQAG---ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA 66
Query: 105 GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164
           GA +   D+ +G TCLH AA  GH + +Q LL+  +             VN +D+ G TP
Sbjct: 67  GALVDPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMD-----------VNCQDDGGWTP 114
Query: 165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADR 224
           +  A      + V  LL  G    S         +  LH+AA  G ++    LLA   D 
Sbjct: 115 MIWATEYKHVDLVKLLLSKG----SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 225 VQPDAFGRIPYAIALKYKHQACAALL 250
              +  G  P  IA +     C  L 
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLF 196

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA + N     G T LH AA YGH + ++ LL        
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                    VN  D  G+TPLHLAA  G  E V  LL +GA   +        G TPLH 
Sbjct: 73  ---------VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD----TWGDTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA  G LE +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 79/166 (47%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA + N     G T LH AA YGH + ++ LL        
Sbjct: 17  KLLEAARAGQDDEVRILMANGADV-NATDASGLTPLHLAATYGHLEIVEVLLKHGAD--- 72
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                    VN  D  G+TPLHLAA  G  E V  LL +GA   +        G TPLH 
Sbjct: 73  ---------VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD----TWGDTPLHL 119
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA  G LE +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 120 AAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPV 144
            L+ AA  G+   V+ L+ +GA    +D   GRT LH AA  GH + ++ LL        
Sbjct: 5   KLLEAARAGQDDEVRILMANGADANAYDH-YGRTPLHMAAAVGHLEIVEVLLRNGAD--- 60
Query: 145 ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF 204
                    VN  D +G TPLHLAA  G  E V  LL  GA   +        G TPL+ 
Sbjct: 61  ---------VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDA----TGITPLYL 107
Query: 205 AARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AA  G LE +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 108 AAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
           N  D  G TPLH+AA  G  E V  LL NGA   ++   NG   +TPLH AA  G LE +
Sbjct: 29  NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA-DVNAVDTNG---TTPLHLAASLGHLEIV 84
Query: 215 RELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
             LL +GAD    DA G  P  +A  + H     +L    A+
Sbjct: 85  EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/103 (44%), Positives = 58/103 (56%), Gaps = 13/103 (12%)
Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
           +TPL +AA NG L  VK L+E+GA + N     GRT LH AA  GH + ++ LL A    
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
                      VN +D++G TPLHLAAR G  E V  LL+ GA
Sbjct: 61  -----------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/107 (42%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
           GRT LH AA  GH + ++ LL A               VN +D++G TPLHLAAR G  E
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNGRTPLHLAARNGHLE 49
Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
            V  LL+ GA            G TPLH AAR G LE ++ LL  GA
Sbjct: 50  VVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/96 (42%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219
           +G TPLHLAAR G  E V  LL+ GA            G TPLH AAR G LE ++ LL 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
Query: 220 WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255
            GAD    D  GR P  +A +  H     LL  + A
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 86  LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
           L+ AA  G+   V+ L+ +GA + N     G T LH AA  G  + ++ LL         
Sbjct: 10  LLEAAAAGQDDEVRILMANGADV-NATDDNGLTPLHLAAANGQLEIVEVLLKNGAD---- 64
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP--GSTPLH 203
                   VN  D +G TPLHLAA  G  E V  LL +GA        N Y   G TPLH
Sbjct: 65  --------VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV------NAYDRAGWTPLH 110
Query: 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            AA  G LE +  LL  GAD    DA G   + I++    +  A +L
Sbjct: 111 LAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 87/200 (43%), Gaps = 31/200 (15%)
Query: 60  EVLSMLLDQFFLYTNTDALNRYK----QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQ 115
           E++  + D+  +  N D L  Y+    +TPLMVA M G  + + KL+E      NFD L+
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVE------NFDKLE 62
Query: 116 -----GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR 170
                G T L +A         + LL+                VN +D SG TPL  +  
Sbjct: 63  DKDIEGSTALIWAVKNNRLGIAEKLLSKGSN------------VNTKDFSGKTPLMWSII 110
Query: 171 QGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAF 230
            G+SE  + LL++GA    +       G TPL  A++ G  E +++LL  GAD    D  
Sbjct: 111 FGYSEMSYFLLEHGA----NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLT 166
Query: 231 GRIPYAIALKYKHQACAALL 250
           G    A A  +  Q    + 
Sbjct: 167 GLTAEASARIFGRQEVIKIF 186

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           VN  D++G TPLHLAA++G  E V  LL +GA   +S       G TPLH AA  G LE 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSW----GRTPLHLAATVGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           +  LL +GAD    D FG+  + I++   ++  A +L
Sbjct: 96  VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           VN  D++G TPLHLAA++G  E V  LL +GA        +   G TPLH AA  G LE 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA----DVNASDIWGRTPLHLAATVGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           +  LL +GAD    D FG+  + I++   ++  A +L
Sbjct: 96  VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           VN  D++G TPLHLAA++G  E V  LL +GA            G TPLH AA  G LE 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA----DVNARDIWGRTPLHLAATVGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           +  LL +GAD    D FG+  + I++   ++  A +L
Sbjct: 96  VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           VN  D  G TPLHLAA  G  E V  LL NGA         G  G TPLH AA    LE 
Sbjct: 40  VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA----DVNATGNTGRTPLHLAAWADHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 96  VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           VN  DE G TPLHLAA+ G  E V  LL  GA            G TPLH AA  G LE 
Sbjct: 40  VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA----DVNAEDNFGITPLHLAAIRGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 96  VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           VN  D  G TPLHLAA     E V  LL +GA        +   GSTPLH AA  G LE 
Sbjct: 40  VNANDRKGNTPLHLAADYDHLEIVEVLLKHGA----DVNAHDNDGSTPLHLAALFGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 96  VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/97 (39%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           VN  D+ G TPLHLAA     E V  LL NGA            G TPLH  A  G LE 
Sbjct: 40  VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA----DVNAIDAIGETPLHLVAMYGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 96  VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/97 (40%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           VN +DE G TPL+LA   G  E V  LL NGA            G TPLH AA  G LE 
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA----DVNAVDAIGFTPLHLAAFIGHLEI 95
Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
              LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 96  AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
           S  G T LH AA  GH++ ++ LL+                VN R + G TPLHLAA+ G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGAD------------VNARSKDGNTPLHLAAKNG 53
Query: 173 WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
            +E V  LL  GA            G+TP H A + G  E ++ L A GAD
Sbjct: 54  HAEIVKLLLAKGA----DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
           + G TPLH AA+ G +E V  LL  GA            G+TPLH AA+ G  E ++ LL
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGA----DVNARSKDGNTPLHLAAKNGHAEIVKLLL 62
Query: 219 AWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE 256
           A GAD       G  P  +A K  H     LL+   A+
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 111 FDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR 170
           F + +G T LH A+  G    ++ LL    + P           N++D +G TPLH A  
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNG-SDP-----------NVKDHAGWTPLHEACN 52
Query: 171 QGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAF 230
            G  + V  LL + AL  ++    GY   +PLH AA+ G ++ ++ LL++GA R   + F
Sbjct: 53  HGHLKVVELLLQHKALVNTT----GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108
Query: 231 GRIP 234
           G  P
Sbjct: 109 GLRP 112

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 25/163 (15%)
Query: 33  ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN 92
           ADPT+   +    ++SALH AAA          L+   L  + + L+R   T L + A N
Sbjct: 190 ADPTIYNKS----ERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHN 245
Query: 93  ---GKLSCVKKLIESGAFI-------LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
               +++  K L+E GA +        + +  +GRT LHYAA   +   ++ L+    ++
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSN 305
Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
                       + +DE G TP+ LAA++G  E V  L+  GA
Sbjct: 306 K-----------DKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 21/218 (9%)
Query: 21  NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR 80
           +G L+ ++  + AD + L   +    ++ALH A + G  E++  LL       + D    
Sbjct: 16  SGKLEELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG- 73
Query: 81  YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAAR 140
              +PL +AA  G+   VK L+  GA + N  +  G T LHYAA     + +  +L    
Sbjct: 74  --WSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHE-IAVMLLEGG 129
Query: 141 TSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGST 200
            +P A           +D   AT +H AA +G  + +H LL   A    ST      G+T
Sbjct: 130 ANPDA-----------KDHYEATAMHRAAAKGNLKMIHILLYYKA----STNIQDTEGNT 174
Query: 201 PLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238
           PLH A     +E  + L++ GA     +   + P  +A
Sbjct: 175 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 96/218 (44%), Gaps = 21/218 (9%)
Query: 21  NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR 80
           +G L+ ++  + AD + L   +    ++ALH A + G  E++  LL       + D    
Sbjct: 17  SGKLEELKESILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG- 74
Query: 81  YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAAR 140
              +PL +AA  G+   VK L+  GA + N  +  G T LHYAA     + +  +L    
Sbjct: 75  --WSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHE-IAVMLLEGG 130
Query: 141 TSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGST 200
            +P A           +D   AT +H AA +G  + +H LL   A    ST      G+T
Sbjct: 131 ANPDA-----------KDHYEATAMHRAAAKGNLKMIHILLYYKA----STNIQDTEGNT 175
Query: 201 PLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238
           PLH A     +E  + L++ GA     +   + P  +A
Sbjct: 176 PLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 90  AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
           A +GKL  +K+ I +   +        RT LH+A   GH++ ++ LL             
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------ 61
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
               VN +D++G +PLH+AA  G  E V  LL  GA   ++   N   G TPLH+AA   
Sbjct: 62  LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA-HVNAVNQN---GCTPLHYAASKN 117
Query: 210 SLECIRELLAWGADRVQPDA 229
             E    LL  GA+   PDA
Sbjct: 118 RHEIAVMLLEGGAN---PDA 134

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 90  AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
           A +GKL  +K+ I +   +        RT LH+A   GH++ ++ LL             
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------ 61
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
               VN +D++G +PLH+AA  G  E V  LL  GA   ++   N   G TPLH+AA   
Sbjct: 62  LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA-HVNAVNQN---GCTPLHYAASKN 117
Query: 210 SLECIRELLAWGADRVQPDA 229
             E    LL  GA+   PDA
Sbjct: 118 RHEIAVMLLEGGAN---PDA 134

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 22/190 (11%)
Query: 48  SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
           S LH A   G +  + +LL         + +     TPL  A ++G   CV  L++ GA 
Sbjct: 38  SPLHEACLGGHLSCVKILLKHG---AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167
           +     L   + +H AA  GH +C+ +L+             +   ++ +     TPL+L
Sbjct: 95  VQPESDLA--SPIHEAARRGHVECVNSLIA------------YGGNIDHKISHLGTPLYL 140
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
           A       CV  LL++GA      G +     +PLH  AR  S E    L+ +GAD    
Sbjct: 141 ACENQQRACVKKLLESGADVNQGKGQD-----SPLHAVARTASEELACLLMDFGADTQAK 195
Query: 228 DAFGRIPYAI 237
           +A G+ P  +
Sbjct: 196 NAEGKRPVEL 205

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
           AAR G  + V  L+ NGA            GSTPLH AAR G LE ++ LL  GAD    
Sbjct: 31  AARAGQDDEVRILMANGA----DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 228 DAFGRIPYAIALKYKHQACAALL 250
           D FG+  + I++   ++  A +L
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEIL 109

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
           AAR G  + V  L+ NGA            GSTPLH AAR G LE ++ LL  GAD    
Sbjct: 13  AARAGQDDEVRILMANGA----DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 228 DAFGRIPYAIALKYKHQACAALL 250
           D FG+  + I++   ++  A +L
Sbjct: 69  DKFGKTAFDISIDNGNEDLAEIL 91

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 22/190 (11%)
Query: 48  SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
           S LH A   G +  + +LL         + +     TPL  A ++G   CV  L++ GA 
Sbjct: 94  SPLHEACLGGHLSCVKILLKHG---AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 150
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167
           +     L   + +H AA  GH +C+ +L+             +   ++ +     TPL+L
Sbjct: 151 VQPESDLA--SPIHEAARRGHVECVNSLIA------------YGGNIDHKISHLGTPLYL 196
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
           A       CV  LL++GA      G +     +PLH   R  S E    L+ +GAD    
Sbjct: 197 ACENQQRACVKKLLESGADVNQGKGQD-----SPLHAVVRTASEELACLLMDFGADTQAK 251
Query: 228 DAFGRIPYAI 237
           +A G+ P  +
Sbjct: 252 NAEGKRPVEL 261

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 18/165 (10%)
Query: 86  LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVA 145
           L+ AA  G+   V+ L+ +GA     D L G + LH AA YGH    + LL A       
Sbjct: 6   LLEAARAGQDDEVRILMANGA-PFTTDWL-GTSPLHLAAQYGHFSTTEVLLRA------- 56
Query: 146 NTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA 205
              G SR  + R +   TPLH+AA +G +  V  LL +GA              T LH+A
Sbjct: 57  ---GVSR--DARTKVDRTPLHMAASEGHANIVEVLLKHGA----DVNAKDMLKMTALHWA 107
Query: 206 ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
                 E +  L+ +GAD      F +  + I++   ++  A +L
Sbjct: 108 TEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 85/220 (38%), Gaps = 40/220 (18%)
Query: 50  LHLAAAYGQIEVLSMLLDQFFLY-TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
           LH+A   G +  +  L++ F       D  N  +QTPL +A +    S V+ L+ +GA  
Sbjct: 13  LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
           +  D   G+T  H A  +    CL+ALL +A    +         +  R+  G T LH+A
Sbjct: 73  MALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLD--------LEARNYDGLTALHVA 123
Query: 169 ARQGWSECVHTLLDNGA------------------------------LACSSTGGNGYPG 198
                 E V  LL+ GA                                 ++     Y G
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSG 183
Query: 199 STPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238
           S+ LH A+  G L  +R L+  GAD    +     P  +A
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 87/214 (40%), Gaps = 19/214 (8%)
Query: 38  LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSC 97
           L  T     +++LHLAA + + +    LLD      + D   R   TPL  A     +  
Sbjct: 43  LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGR---TPLHAAVAADAMGV 99
Query: 98  VKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR 157
            + L+ + A  LN     G T L  AA       ++ L+TA               +N  
Sbjct: 100 FQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA------------DADINAA 147
Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
           D SG T LH AA    +E V+ LL    +  ++         TPL  AAR GS E  + L
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILL----MHHANRDAQDDKDETPLFLAAREGSYEASKAL 203
Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLN 251
           L   A+R   D   R+P  +A +  H     LL+
Sbjct: 204 LDNFANREITDHMDRLPRDVASERLHHDIVRLLD 237

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 54/206 (26%)
Query: 53  AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
           AAA G ++ +  LL +  ++   DALNR+ +T L V  M G  +   +L++ GA      
Sbjct: 15  AAARGDVQEVRRLLHRELVHP--DALNRFGKTALQVM-MFGSTAIALELLKQGA------ 65
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
                                        SP           N++D SG +P+H AAR G
Sbjct: 66  -----------------------------SP-----------NVQDTSGTSPVHDAARTG 85
Query: 173 WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR 232
           + + +  L+++GA      G     G+ P+H A + G    +   LA  +D  + DA G 
Sbjct: 86  FLDTLKVLVEHGADVNVPDG----TGALPIHLAVQEGHTAVV-SFLAAESDLHRRDARGL 140
Query: 233 IPYAIALKYKHQACAALLNPSSAEPL 258
            P  +AL+   Q    +L      PL
Sbjct: 141 TPLELALQRGAQDLVDILQGHMVAPL 166

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
           AAR G  + V  L+ NGA   ++   +GY   TPLH AAR G LE +  LL  GAD    
Sbjct: 9   AARAGQDDEVRILMANGA-DVNAKDKDGY---TPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 228 DAFGRIPYAIALKYKHQACAALLNPSS 254
           D FG+  + I++   ++  A +L  ++
Sbjct: 65  DKFGKTAFDISIDNGNEDLAEILQKAA 91

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 81/204 (39%), Gaps = 19/204 (9%)
Query: 48  SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
           +ALHLAAAY + +    LL+        D + R   TPL  A         + LI + A 
Sbjct: 59  TALHLAAAYSRSDAAKRLLEASADANIQDNMGR---TPLHAAVSADAQGVFQILIRNRAT 115
Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167
            L+     G T L  AA       L+ L+ +               VN  D+ G + LH 
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNAVDDLGKSALHW 163
Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
           AA     +    LL NGA    +         TPL  AAR GS E  + LL   A+R   
Sbjct: 164 AAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT 219
Query: 228 DAFGRIPYAIALKYKHQACAALLN 251
           D   R+P  IA +  H     LL+
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 64/161 (39%), Gaps = 16/161 (9%)
Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
           +N  S  G + LH AA +G +D +  LL        AN          R+   A PLHLA
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLIPLLLKHG-----ANAGA-------RNADQAVPLHLA 126
Query: 169 ARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPD 228
            +QG  + V  LLD+ A            G+TPL +A  GG  E +  LL  GA     +
Sbjct: 127 CQQGHFQVVKCLLDSNA----KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 229 AFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTD 269
             G      A+  KH     LL    A   V   + R   D
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD 223

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           ++ALHLAA Y + +    LL+        D + R   TPL  A         + LI + A
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADANIQDNMGR---TPLHAAVSADAQGVFQILIRNRA 114
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
             L+     G T L  AA       L+ L+ +               VN  D+ G + LH
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNAVDDLGKSALH 162
Query: 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ 226
            AA     +    LL NGA    +         TPL  AAR GS E  + LL   A+R  
Sbjct: 163 WAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 218
Query: 227 PDAFGRIPYAIALKYKHQACAALLN 251
            D   R+P  IA +  H     LL+
Sbjct: 219 TDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           ++ALHLAA Y + +    LL+        D + R   TPL  A         + LI + A
Sbjct: 59  ETALHLAARYSRSDAAKRLLEASADANIQDNMGR---TPLHAAVSADAQGVFQILIRNRA 115
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
             L+     G T L  AA       L+ L+ +               VN  D+ G + LH
Sbjct: 116 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNAVDDLGKSALH 163
Query: 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ 226
            AA     +    LL NGA    +         TPL  AAR GS E  + LL   A+R  
Sbjct: 164 WAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 219
Query: 227 PDAFGRIPYAIALKYKHQACAALLN 251
            D   R+P  IA +  H     LL+
Sbjct: 220 TDHMDRLPRDIAQERMHHDIVRLLD 244

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 9/224 (4%)
Query: 37  VLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLS 96
           V G  +  G  +ALHLA  +     L  LL     +   D  N   QT L +AA+ G+ S
Sbjct: 1   VFGYVTEDG-DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59
Query: 97  CVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP--VANTWGFSRFV 154
            V+KL  +GA +L  +   G T LH A       C   LL    + P   ++T+  ++  
Sbjct: 60  TVEKLYAAGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY-LTQSQ 117
Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
           +   ++   P  + ++           ++  L   +     Y G TPLH A      E +
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA---ENYDGHTPLHVAVIHKDAEMV 174
Query: 215 RELLAWGADRVQPDAF-GRIPYAIALKYKHQACAALLNPSSAEP 257
           R L   GAD  +P+   GR P  +A++ +  +   LL  + A+P
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 9/224 (4%)
Query: 37  VLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLS 96
           V G  +  G  +ALHLA  +     L  LL     +   D  N   QT L +AA+ G+ S
Sbjct: 1   VFGYVTEDG-DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59
Query: 97  CVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP--VANTWGFSRFV 154
            V+KL  +GA +L  +   G T LH A       C   LL    + P   ++T+  ++  
Sbjct: 60  TVEKLYAAGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY-LTQSQ 117
Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
           +   ++   P  + ++           ++  L   +     Y G TPLH A      E +
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA---ENYDGHTPLHVAVIHKDAEMV 174
Query: 215 RELLAWGADRVQPDAF-GRIPYAIALKYKHQACAALLNPSSAEP 257
           R L   GAD  +P+   GR P  +A++ +  +   LL  + A+P
Sbjct: 175 RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 90  AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
           A  G+L  +K+ +  G  ++N    +G T L +A+ +G  + ++ LL           WG
Sbjct: 10  AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE----------WG 59
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
               +  ++   A  L LA+  G+++ V  LL+             + G TPL +A RG 
Sbjct: 60  ADPHILAKERESA--LSLASTGGYTDIVGLLLERDV----DINIYDWNGGTPLLYAVRGN 113
Query: 210 SLECIRELLAWGADRVQPDAFGRIP--YAIALKYK 242
            ++C+  LLA GAD       G  P   A+AL Y+
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 23/152 (15%)
Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
           +PL  A   G+ + V+ LI  GA I N  +    T LH AA +GH D +Q LL       
Sbjct: 41  SPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQ------ 93
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
                 +   +N  +E G  PLH A   G  +    L+ NGAL       N Y G  P+ 
Sbjct: 94  ------YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC---NKY-GEMPVD 143
Query: 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
            A        +RELL   A+++  +   RIPY
Sbjct: 144 KAK-----APLRELLRERAEKMGQN-LNRIPY 169

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           +N  D+ G +PLH A R+G S  V  L+  GA       G+     TPLH AA  G  + 
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD----DTPLHLAASHGHRDI 87
Query: 214 IRELLAWGADRVQPDAFGRIPYAIA 238
           +++LL + AD    +  G +P   A
Sbjct: 88  VQKLLQYKADINAVNEHGNVPLHYA 112

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 54/199 (27%)
Query: 53  AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
           AAA G ++ +  LL +  ++   DALNR+ +T L V  M G  +   +L++ GA      
Sbjct: 9   AAARGDVQEVRRLLHRELVHP--DALNRFGKTALQVM-MFGSTAIALELLKQGA------ 59
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
                                        SP           N++D SG +P+H AAR G
Sbjct: 60  -----------------------------SP-----------NVQDTSGTSPVHDAARTG 79
Query: 173 WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR 232
           + + +  L+++GA      G     G+ P+H A + G    +   LA  +D  + DA G 
Sbjct: 80  FLDTLKVLVEHGADVNVPDG----TGALPIHLAVQEGHTAVV-SFLAAESDLHRRDARGL 134
Query: 233 IPYAIALKYKHQACAALLN 251
            P  +AL+   Q    +L 
Sbjct: 135 TPLELALQRGAQDLVDILQ 153

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 198 GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS 254
           G++P+H AAR G L+ ++ L+  GAD   PD  G +P  +A++  H A  + L   S
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 23/152 (15%)
Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
           +PL  A   G+ + V+ LI  GA I N  +    T LH AA +GH D +Q LL       
Sbjct: 36  SPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQ------ 88
Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
                 +   +N  +E G  PLH A   G  +    L+ NGAL       N Y G  P+ 
Sbjct: 89  ------YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC---NKY-GEMPVD 138
Query: 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
            A        +RELL   A+++  +   RIPY
Sbjct: 139 KAK-----APLRELLRERAEKMGQN-LNRIPY 164

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           +N  D+ G +PLH A R+G S  V  L+  GA       G+     TPLH AA  G  + 
Sbjct: 27  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD----DTPLHLAASHGHRDI 82
Query: 214 IRELLAWGADRVQPDAFGRIPYAIA 238
           +++LL + AD    +  G +P   A
Sbjct: 83  VQKLLQYKADINAVNEHGNVPLHYA 107

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 81/205 (39%), Gaps = 19/205 (9%)
Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           ++ALHLAA Y + +    LL+        D + R   TPL  A         + LI + A
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADANIQDNMGR---TPLHAAVSADAQGVFQILIRNRA 82
Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
             L+     G T L  AA       L+ L+ +               VN  D+ G + LH
Sbjct: 83  TDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNAVDDLGKSALH 130
Query: 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ 226
            AA     +    LL NGA    +         TPL  AAR GS E  + LL   A+R  
Sbjct: 131 WAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 186
Query: 227 PDAFGRIPYAIALKYKHQACAALLN 251
            D   R+P  IA +  H     LL+
Sbjct: 187 TDHMDRLPRDIAQERMHHDIVRLLD 211

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 74/207 (35%), Gaps = 51/207 (24%)
Query: 96  SCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF-- 153
           S +   I  GA + N     G T LH AA Y  SD  + LL A+  + + +  G +    
Sbjct: 2   SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHA 61
Query: 154 --------------------VNIRDESGATPLHLAARQGWSECVHTLLDNGA-------L 186
                               ++ R   G TPL LAAR      +  L+++ A       L
Sbjct: 62  AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL 121
Query: 187 ACSS------------------TGGN----GYPGSTPLHFAARGGSLECIRELLAWGADR 224
             S+                   G N         TPL  AAR GS E  + LL   A+R
Sbjct: 122 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANR 181
Query: 225 VQPDAFGRIPYAIALKYKHQACAALLN 251
              D   R+P  IA +  H     LL+
Sbjct: 182 DITDHMDRLPRDIAQERMHHDIVRLLD 208

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 86  LMVAAMNGKLSCVKKL--IESGAFILNFDSLQGR--TCLHYAAYYGHSDCLQALLTAART 141
           L+ AA  G +  VKKL  ++S    +N   ++GR  T LH+AA Y     ++ LL     
Sbjct: 12  LLEAAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 67
Query: 142 SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP 201
                       V+ +D+ G  PLH A   G  E    L+ +GA+   +         TP
Sbjct: 68  ------------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD----LWKFTP 111
Query: 202 LHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234
           LH AA  G  E  + LL  GAD  + +  G  P
Sbjct: 112 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 144

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 69/170 (40%), Gaps = 20/170 (11%)
Query: 53  AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
           AAA G +E L+ LL         +   R   T L V  + G     ++L+  GA   +  
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGR---TALQVMKL-GNPEIARRLLLRGANP-DLK 66
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
              G   +H AA  G  D LQ LL             F   VNI D  G  PLHLAA++G
Sbjct: 67  DRTGNAVIHDAARAGFLDTLQTLLE------------FQADVNIEDNEGNLPLHLAAKEG 114
Query: 173 WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
               V  L+ + A   S+ G   + G T    A   G  E +  + A GA
Sbjct: 115 HLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 86  LMVAAMNGKLSCVKKL--IESGAFILNFDSLQGR--TCLHYAAYYGHSDCLQALLTAART 141
           L+ AA  G +  VKKL  ++S    +N   ++GR  T LH+AA Y     ++ LL     
Sbjct: 14  LLEAAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 69
Query: 142 SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP 201
                       V+ +D+ G  PLH A   G  E    L+ +GA+   +         TP
Sbjct: 70  ------------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD----LWKFTP 113
Query: 202 LHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234
           LH AA  G  E  + LL  GAD  + +  G  P
Sbjct: 114 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 146

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 53  AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
           AAA G +E L+ LL         +   R   T L V  + G     ++L+  GA   N D
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGR---TALQVMKL-GNPEIARRLLLRGA---NPD 64
Query: 113 SLQGRT---CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
            L+ RT    +H AA  G  D LQ LL             F   VNI D  G  PLHLAA
Sbjct: 65  -LKDRTGFAVIHDAARAGQLDTLQTLLE------------FQADVNIEDNEGNLPLHLAA 111
Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
           ++G    V  L+ + A   S+ G   + G T    A   G  E +  + A GA
Sbjct: 112 KEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 86  LMVAAMNGKLSCVKKL--IESGAFILNFDSLQGR--TCLHYAAYYGHSDCLQALLTAART 141
           L+ AA  G +  VKKL  ++S    +N   ++GR  T LH+AA Y     ++ LL     
Sbjct: 16  LLEAAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD 71
Query: 142 SPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP 201
                       V+ +D+ G  PLH A   G  E    L+ +GA+   +         TP
Sbjct: 72  ------------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD----LWKFTP 115
Query: 202 LHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234
           LH AA  G  E  + LL  GAD  + +  G  P
Sbjct: 116 LHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 148

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 67/158 (42%), Gaps = 16/158 (10%)
Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
           ++PL++AA    +  + KL++     ++     G T LH AA Y   D L+A +     +
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY---DNLEAAMVLMEAA 60
Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNG------- 195
           P      F    +   E G T LH+A        V  LL  GA   +   G+        
Sbjct: 61  P---ELVFEPMTSELYE-GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHN 116
Query: 196 --YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFG 231
             Y G  PL FAA  GS E +R L+  GAD    D+ G
Sbjct: 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 58/208 (27%)
Query: 53  AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
           AAA G ++ +  LL +  ++   DALNR+ +T L V  M G  +   +L++ GA      
Sbjct: 17  AAARGDVQEVRRLLHRELVHP--DALNRFGKTALQVM-MFGSPAVALELLKQGA------ 67
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
                                        SP           N++D SG +P+H AAR G
Sbjct: 68  -----------------------------SP-----------NVQDASGTSPVHDAARTG 87
Query: 173 WSECVHTLLDNGA--LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAF 230
           + + +  L+++GA   A  ST      GS P+H A R G    +   LA  +D    DA 
Sbjct: 88  FLDTLKVLVEHGADVNALDST------GSLPIHLAIREGH-SSVVSFLAPESDLHHRDAS 140
Query: 231 GRIPYAIALKYKHQACAALLNPSSAEPL 258
           G  P  +A +   Q    +L      P+
Sbjct: 141 GLTPLELARQRGAQNLMDILQGHMMIPM 168

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 84/208 (40%), Gaps = 58/208 (27%)
Query: 53  AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
           AAA G ++ +  LL +  ++   DALNR+ +T L V  M G  +   +L++ GA      
Sbjct: 15  AAARGDVQEVRRLLHRELVHP--DALNRFGKTALQVM-MFGSPAVALELLKQGA------ 65
Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
                                        SP           N++D SG +P+H AAR G
Sbjct: 66  -----------------------------SP-----------NVQDASGTSPVHDAARTG 85
Query: 173 WSECVHTLLDNGA--LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAF 230
           + + +  L+++GA   A  ST      GS P+H A R G    +   LA  +D    DA 
Sbjct: 86  FLDTLKVLVEHGADVNALDST------GSLPIHLAIREGHSSVV-SFLAPESDLHHRDAS 138
Query: 231 GRIPYAIALKYKHQACAALLNPSSAEPL 258
           G  P  +A +   Q    +L      P+
Sbjct: 139 GLTPLELARQRGAQNLMDILQGHMMIPM 166

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 53  AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
           AAA G +E L+ LL         +   R   T L V  + G     ++L+  GA   N D
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGR---TALQVMKL-GNPEIARRLLLRGA---NPD 64
Query: 113 SLQGRT---CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
            L+ RT    +H AA  G  D LQ LL             F   VNI D  G  PLHLAA
Sbjct: 65  -LKDRTGFAVIHDAARAGFLDTLQTLLE------------FQADVNIEDNEGNLPLHLAA 111
Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
           ++G    V  L+ + A   S+ G   + G T    A   G  E +  + A GA
Sbjct: 112 KEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 90  AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWG 149
           A  G+L  +K+ +  G  ++N    +G T L +A+ +G  + ++ LL           WG
Sbjct: 10  AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE----------WG 59
Query: 150 FSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
               +  ++   A  L LA+  G+++ V  LL+             + G TPL +A  G 
Sbjct: 60  ADPHILAKERESA--LSLASTGGYTDIVGLLLERDV----DINIYDWNGGTPLLYAVHGN 113
Query: 210 SLECIRELLAWGADRVQPDAFGRIP--YAIALKYK 242
            ++C+  LLA GAD       G  P   A+AL Y+
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 9   ERSESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
           E   + L  A  +G + ++E +++  ADP +LG     G++SAL LA + G  +++ MLL
Sbjct: 32  EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK----GRESALSLACSKGYTDIVKMLL 87
Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           D      + +  +    TPL+ A     + CVK L+ESGA
Sbjct: 88  D---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 31/122 (25%)
Query: 152 RFVNIRDESGATPLHLAARQGWSECVHTLLDNGA--------------LACSS------- 190
             +N  DE G TPL  AA  G    V  LL NGA              LACS        
Sbjct: 25  NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 84
Query: 191 --------TGGNGYPGSTPLHFAARGGSLECIRELLAWGAD-RVQPDA-FGRIPYAIALK 240
                        + G TPL +A  G  ++C++ LL  GAD  ++ D+ +  +  A+AL 
Sbjct: 85  MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Query: 241 YK 242
           Y+
Sbjct: 145 YR 146

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 9   ERSESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
           E   + L  A  +G + ++E +++  ADP +LG     G++SAL LA + G  +++ MLL
Sbjct: 34  EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK----GRESALSLACSKGYTDIVKMLL 89
Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           D      + +  +    TPL+ A     + CVK L+ESGA
Sbjct: 90  D---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 31/122 (25%)
Query: 152 RFVNIRDESGATPLHLAARQGWSECVHTLLDNGA--------------LACSS------- 190
             +N  DE G TPL  AA  G    V  LL NGA              LACS        
Sbjct: 27  NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK 86
Query: 191 --------TGGNGYPGSTPLHFAARGGSLECIRELLAWGAD-RVQPDA-FGRIPYAIALK 240
                        + G TPL +A  G  ++C++ LL  GAD  ++ D+ +  +  A+AL 
Sbjct: 87  MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Query: 241 YK 242
           Y+
Sbjct: 147 YR 148

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 53  AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
           AAA G +E L+ LL         +   R   T L V  + G     ++L+  GA   N D
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGR---TALQVMKL-GNPEIARRLLLRGA---NPD 64
Query: 113 SLQGRT---CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
            L+ RT    +H AA  G  D LQ LL             F   VNI D  G  PLHLAA
Sbjct: 65  -LKDRTGFAVIHDAARAGFLDTLQTLLE------------FQADVNIEDNEGNLPLHLAA 111
Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
           ++G    V  L+ + A   S+ G   + G T    A   G  E +  + A GA
Sbjct: 112 KEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 9   ERSESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
           E   + L  A  +G + ++E +++  ADP +LG     G++SAL LA + G  +++ MLL
Sbjct: 50  EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK----GRESALSLACSKGYTDIVKMLL 105
Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           D      + +  +    TPL+ A     + CVK L+ESGA
Sbjct: 106 D---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 31/120 (25%)
Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGA--------------LACSS--------- 190
           +N  DE G TPL  AA  G    V  LL NGA              LACS          
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 191 ------TGGNGYPGSTPLHFAARGGSLECIRELLAWGAD-RVQPDA-FGRIPYAIALKYK 242
                      + G TPL +A  G  ++C++ LL  GAD  ++ D+ +  +  A+AL Y+
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 18  AVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA 77
           A++NGDL  ++  V     V    +  G +  LH AA  GQ+E+L  LL       + +A
Sbjct: 9   ALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQLEILEFLL---LKGADINA 63
Query: 78  LNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
            +++  TPL+ A   G +SCVK L+  GA
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGA 92

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 18  AVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA 77
           A++NGDL  ++  V     V    +  G +  LH AA  GQ+E+L  LL       + +A
Sbjct: 14  ALKNGDLDEVKDYVAKGEDV--NRTLEGGRKPLHYAADCGQLEILEFLL---LKGADINA 68
Query: 78  LNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
            +++  TPL+ A   G +SCVK L+  GA
Sbjct: 69  PDKHHITPLLSAVYEGHVSCVKLLLSKGA 97

>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B Length = 394

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEV--PACPFCRCS 375
            S  +LC IC EN   ++I+PCGH MC  C            +TA  E     CPFCRC 
Sbjct: 335 GSTFQLCKICAENDKDVKIEPCGHLMCTSC------------LTAWQESDGQGCPFCRCE 382
Query: 376 I 376
           I
Sbjct: 383 I 383

>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex Length = 391

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
            S  +LC IC EN   ++I+PCGH MC  C  +              E   CPFCRC I
Sbjct: 331 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 379

>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex Length = 391

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
            S  +LC IC EN   ++I+PCGH MC  C  +              E   CPFCRC I
Sbjct: 331 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 379

>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl Length = 389

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
            S  +LC IC EN   ++I+PCGH MC  C  +              E   CPFCRC I
Sbjct: 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 377

>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In Ubiquitin-Protein Ligases Length = 388

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
            S  +LC IC EN   ++I+PCGH MC  C  +              E   CPFCRC I
Sbjct: 329 GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 377

>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For Ubiquitination Activity Length = 83

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
            S  +LC IC EN   ++I+PCGH MC  C  +              E   CPFCRC I
Sbjct: 21  GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 69

>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The Tyr363 Phosphorylated Form Length = 82

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
            S  +LC IC EN   ++I+PCGH MC  C  A              +   CPFCRC I
Sbjct: 23  GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTAW----------QESDGQGCPFCRCEI 71

>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex Length = 84

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
            S  +LC IC EN   ++I+PCGH MC  C  +              E   CPFCRC I
Sbjct: 24  GSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSW----------QESEGQGCPFCRCEI 72

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 66  LDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
           L Q     + DA++   +T L+  A  G   CV+ L E+GA + + D   G T LH AA 
Sbjct: 61  LSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120
Query: 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
           Y   + ++AL+                 + + DE G T L LA
Sbjct: 121 YVRPEVVEALVE------------LGADIEVEDERGLTALELA 151

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 66  LDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
           L Q     + DA++   +T L+  A  G   CV+ L E+GA + + D   G T LH AA 
Sbjct: 60  LSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119
Query: 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
           Y   + ++AL+                 + + DE G T L LA
Sbjct: 120 YVRPEVVEALVE------------LGADIEVEDERGLTALELA 150

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 72/173 (41%), Gaps = 26/173 (15%)
Query: 53  AAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
           AAA G +E L+ LL         +   R   T L V  + G     ++L+  GA   N D
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGR---TALQVMKL-GNPEIARRLLLRGA---NPD 64
Query: 113 SLQGRT---CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
            L+ RT    +H AA  G  D LQ LL                 VNI D  G  PLHLAA
Sbjct: 65  -LKDRTGFAVIHDAARAGFLDTLQTLLENQAD------------VNIEDNEGNLPLHLAA 111
Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
           ++G    V  L+ + A   S+ G   + G T    A   G  E +  + A GA
Sbjct: 112 KEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 81  YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGR-TCLHYAAYYGHSDCLQALLTAA 139
           +K   L+ AA    L+ VKK +     I+NF   Q   T LH         C  A L   
Sbjct: 177 FKGHSLLQAAREADLAKVKKTL--ALEIINFKQPQSHETALH---------CAVASLHPK 225
Query: 140 RTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGS 199
           R             VN +++   TPLH+AA +  ++ +  L  +GA            G 
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA----KMNALDSLGQ 281
Query: 200 TPLHFAARGGSLECIRELLAWGAD 223
           T LH AA  G L+  R LL++G+D
Sbjct: 282 TALHRAALAGHLQTCRLLLSYGSD 305

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
           D+   T LH AA     + V   +  GA+     GG+    STPLH+A R G L  + +L
Sbjct: 39  DKENVTLLHWAAINNRIDLVKYYISKGAI-VDQLGGD--LNSTPLHWATRQGHLSMVVQL 95
Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAA----------LLNPSSAEPLVW 260
           + +GAD    D  G     +A ++ H +  A          +++ +   PL+W
Sbjct: 96  MKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMW 148

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 15  LFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
           L +AV N D+++ +A+++  AD  +    S     S    A A G+ E+L+ +L      
Sbjct: 43  LNIAVHNNDIEIAKALIDRGADINLQNSIS----DSPYLYAGAQGRTEILAYMLKHAT-- 96
Query: 73  TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCL 132
            + +  NRY    L+ AA  G +  VK L+E G   ++F +  G T L  A      + L
Sbjct: 97  PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156
Query: 133 QALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
              +        A+        +I+D SG T +  A ++G++E    L
Sbjct: 157 YQDIVKLLMENGADQ-------SIKDNSGRTAMDYANQKGYTEISKIL 197

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 69/193 (35%), Gaps = 31/193 (16%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAART--- 141
           PL  A M  +   V++L+ S   +L      GR  LH++  +   +    LL+       
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 142 SPVANTWGFSRF-----------------------VNIRDESGATPLHLAARQGWSECVH 178
               +  G++ F                       +N     G T LHLA  + W E   
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 179 TLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ-PDAFGRIPYAI 237
            L++NGA        N      PLH AA  GSL+ I  L   G   V   D  G  P   
Sbjct: 125 FLIENGASVRIKDKFN----QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Query: 238 ALKYKHQACAALL 250
           AL   H   A LL
Sbjct: 181 ALAEGHGDAAVLL 193

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 69/193 (35%), Gaps = 31/193 (16%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAART--- 141
           PL  A M  +   V++L+ S   +L      GR  LH++  +   +    LL+       
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 142 SPVANTWGFSRF-----------------------VNIRDESGATPLHLAARQGWSECVH 178
               +  G++ F                       +N     G T LHLA  + W E   
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 179 TLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ-PDAFGRIPYAI 237
            L++NGA        N      PLH AA  GSL+ I  L   G   V   D  G  P   
Sbjct: 125 FLIENGASVRIKDKFN----QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Query: 238 ALKYKHQACAALL 250
           AL   H   A LL
Sbjct: 181 ALAEGHGDAAVLL 193

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 69/193 (35%), Gaps = 31/193 (16%)
Query: 85  PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAART--- 141
           PL  A M  +   V++L+ S   +L      GR  LH++  +   +    LL+       
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 142 SPVANTWGFSRF-----------------------VNIRDESGATPLHLAARQGWSECVH 178
               +  G++ F                       +N     G T LHLA  + W E   
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 179 TLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ-PDAFGRIPYAI 237
            L++NGA        N      PLH AA  GSL+ I  L   G   V   D  G  P   
Sbjct: 125 FLIENGASVRIKDKFN----QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 180
Query: 238 ALKYKHQACAALL 250
           AL   H   A LL
Sbjct: 181 ALAEGHGDAAVLL 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	460
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-33
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-43
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-35
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-41
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-31
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-40
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-38
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-32
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-40
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-35
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-31
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-40
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-34
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-39
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-39
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-38
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-37
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-38
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-38
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-38
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-34
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-32
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-37
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-33
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-37
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-36
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-35
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-30
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-27
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-27
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-35
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-33
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-32
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-32
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-26
2rfa_A	232	Transient receptor potential cation channel subfa	4e-33
2rfa_A	232	Transient receptor potential cation channel subfa	2e-32
2rfa_A	232	Transient receptor potential cation channel subfa	1e-19
2rfa_A	232	Transient receptor potential cation channel subfa	2e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-33
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-26
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-33
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-32
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-32
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-21
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-31
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-32
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-31
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-24
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-30
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-31
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-30
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-31
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-26
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-24
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-26
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-09
2pnn_A	273	Transient receptor potential cation channel subfa	8e-31
2pnn_A	273	Transient receptor potential cation channel subfa	2e-29
2pnn_A	273	Transient receptor potential cation channel subfa	7e-28
2pnn_A	273	Transient receptor potential cation channel subfa	5e-26
2pnn_A	273	Transient receptor potential cation channel subfa	1e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-31
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-08
2etb_A	256	Transient receptor potential cation channel subfam	2e-29
2etb_A	256	Transient receptor potential cation channel subfam	2e-24
2etb_A	256	Transient receptor potential cation channel subfam	9e-23
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-25
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-28
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-27
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-11
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-26
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-21
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-26
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-23
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-21
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-19
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-08
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	5e-08
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	7e-06
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	1e-05
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	3e-05
2ea5_A	68	Cell growth regulator with ring finger domain prot	4e-05
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	3e-04
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	5e-04
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	9e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  163 bits (415), Expect = 1e-45
 Identities = 66/247 (26%), Positives = 103/247 (41%), Gaps = 26/247 (10%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
            + L VAV + +L +++ ++     P      +  G  + LH+AA   Q+EV   LL   
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHS---PAWNGY-TPLHIAAKQNQVEVARSLLQY- 234

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
               + +A +    TPL +AA  G    V  L+   A   N  +  G T LH  A  GH 
Sbjct: 235 --GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHV 291

Query: 130 DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACS 189
                L+                 V+     G TPLH+A+  G  + V  LL + A   +
Sbjct: 292 PVADVLIKHG-----VM-------VDATTRMGYTPLHVASHYGNIKLVKFLLQHQA-DVN 338

Query: 190 STGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAAL 249
           +    GY   +PLH AA+ G  + +  LL  GA   +  + G  P AIA +  + +   +
Sbjct: 339 AKTKLGY---SPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDV 395

Query: 250 LNPSSAE 256
           L   + E
Sbjct: 396 LKVVTDE 402

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  154 bits (393), Expect = 1e-42
 Identities = 74/241 (30%), Positives = 105/241 (43%), Gaps = 26/241 (10%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
            + L VA   G L +++ +++  A P V   ++    ++ LH+AA  G  EV   LL   
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNV---SNVKV-ETPLHMAARAGHTEVAKYLLQN- 69

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
                 +A  +  QTPL  AA  G  + VK L+E+ A   N  +  G T LH AA  GH 
Sbjct: 70  --KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHV 126

Query: 130 DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACS 189
           + + ALL        A+            + G TPLH+AA+ G       LL+  A   +
Sbjct: 127 ETVLALLEKE-----AS-------QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-N 173

Query: 190 STGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAAL 249
           + G NG    TPLH A    +L+ ++ LL  G     P   G  P  IA K      A  
Sbjct: 174 AAGKNGL---TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230

Query: 250 L 250
           L
Sbjct: 231 L 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (357), Expect = 2e-37
 Identities = 58/232 (25%), Positives = 99/232 (42%), Gaps = 29/232 (12%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
            + L +A +   +++  ++++           S  G  + LHLAA  G  E++++LL + 
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANA---ESVQG-VTPLHLAAQEGHAEMVALLLSK- 267

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
               N +  N+   TPL + A  G +     LI+ G  + +  +  G T LH A++YG+ 
Sbjct: 268 --QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNI 324

Query: 130 DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACS 189
             ++ LL        A+       VN + + G +PLH AA+QG ++ V  LL NGA    
Sbjct: 325 KLVKFLLQHQ-----AD-------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372

Query: 190 STGGNGYPGSTPLHFAARGGSLECIRELLAW---GADRVQPDAFGRIPYAIA 238
            +      G+TPL  A R G +     L       +  +  D          
Sbjct: 373 VSSD----GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  129 bits (328), Expect = 2e-33
 Identities = 59/177 (33%), Positives = 79/177 (44%), Gaps = 17/177 (9%)

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
           +         TPL VA+  G L  VK L++ GA   N  +++  T LH AA  GH++  +
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAK 64

Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGG 193
            LL        A        VN + +   TPLH AAR G +  V  LL+N A   +    
Sbjct: 65  YLLQNK-----AK-------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANP-NLATT 111

Query: 194 NGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            G+   TPLH AAR G +E +  LL   A +      G  P  +A KY     A LL
Sbjct: 112 AGH---TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  150 bits (382), Expect = 2e-42
 Identities = 56/245 (22%), Positives = 93/245 (37%), Gaps = 34/245 (13%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
            S +  A  +G    +  ++         T   ++        LH A   G +  + +LL
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS-------PLHEACLGGHLSCVKILL 112

Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
                    + +     TPL  A ++G   CV  L++ GA +   +S    + +H AA  
Sbjct: 113 KH---GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPES-DLASPIHEAARR 167

Query: 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
           GH +C+ +L+         N       ++ +     TPL+LA       CV  LL++GA 
Sbjct: 168 GHVECVNSLIAYG-----GN-------IDHKISHLGTPLYLACENQQRACVKKLLESGAD 215

Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
                G +     +PLH   R  S E    L+ +GAD    +A G+ P  +       A 
Sbjct: 216 VNQGKGQD-----SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ 270

Query: 247 AALLN 251
             L  
Sbjct: 271 LFLER 275

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  132 bits (335), Expect = 1e-35
 Identities = 56/234 (23%), Positives = 93/234 (39%), Gaps = 25/234 (10%)

Query: 17  VAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTD 76
           +   +        +V     +  M    GKQ  +  +   G  +   + L    L    D
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMD---GKQGGMDGSKPAGPRDFPGIRLLSNPL--MGD 55

Query: 77  ALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALL 136
           A++    +P+  AA++G    ++ LI  G  + N  +    + LH A   GH  C++ LL
Sbjct: 56  AVS--DWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLGGHLSCVKILL 112

Query: 137 TAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGY 196
                   A        VN       TPL  A   G  +CV+ LL +GA     +     
Sbjct: 113 KHG-----AQ-------VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-- 158

Query: 197 PGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
              +P+H AAR G +EC+  L+A+G +     +    P  +A + + +AC   L
Sbjct: 159 ---SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  146 bits (370), Expect = 3e-41
 Identities = 61/244 (25%), Positives = 99/244 (40%), Gaps = 33/244 (13%)

Query: 14  ALFVAVENGDLQMIEAMVE--AD---PTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
            +  A + G  +    +VE   D   P    +T        LH AA   +I+++   + +
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDKENVT-------LLHWAAINNRIDLVKYYISK 64

Query: 69  FFLYTNTDAL-NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127
                  D L      TPL  A   G LS V +L++ GA   +    +G +C+H AA +G
Sbjct: 65  ---GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFG 120

Query: 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS-ECVHTLLDNGAL 186
           H+  +  L+         +       V++ D++G TPL  AA +  S +    LL     
Sbjct: 121 HTSIVAYLIAKG-----QD-------VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV- 167

Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
             S   G+ Y  +T LH+A   G+   I  LL  GA+    +  G     +A + K+   
Sbjct: 168 --SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWM 225

Query: 247 AALL 250
              L
Sbjct: 226 INHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  132 bits (334), Expect = 4e-36
 Identities = 49/215 (22%), Positives = 81/215 (37%), Gaps = 27/215 (12%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
            L  A  N  + +++  +   A    LG        + LH A   G + ++  L+     
Sbjct: 45  LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS---TPLHWATRQGHLSMVVQLMKY--- 98

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS-D 130
             +   ++    + + +AA  G  S V  LI  G  + +     G T L +AAY  HS D
Sbjct: 99  GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVD 157

Query: 131 CLQALLTAARTSPVANTWGFSRFVNIRDES-GATPLHLAARQGWSECVHTLLDNGALACS 189
             + LLT        +       VN+ D+    T LH A   G +  +  LL+ GA   +
Sbjct: 158 PTRLLLTFN-----VS-------VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA---N 202

Query: 190 STGGNGYPGSTPLHFAARGGSLECIRELLAWGADR 224
               N   G + L  A +  ++  I  L      +
Sbjct: 203 VDAQNIK-GESALDLAKQRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  119 bits (301), Expect = 3e-31
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 18/162 (11%)

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
           +   ++ Y    ++ A   G     ++L+E+G  +      +  T LH+AA     D ++
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAINNRIDLVK 59

Query: 134 ALLTAARTSPVANTWGFSRFVNIRD-ESGATPLHLAARQGWSECVHTLLDNGALACSSTG 192
             ++       A        V+    +  +TPLH A RQG    V  L+  GA     + 
Sbjct: 60  YYISKG-----AI-------VDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGA---DPSL 104

Query: 193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234
            +G  G + +H AA+ G    +  L+A G D    D  G  P
Sbjct: 105 IDGE-GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 69.0 bits (170), Expect = 1e-13
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           +   D+     +  A + G  E    L++ G         +     T LH+AA    ++ 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGY---DVRQPDKE-NVTLLHWAAINNRIDL 57

Query: 214 IRELLAWGADRVQPDA----FGRIPYAIALKYKHQACAALL 250
           ++  ++ GA     D         P   A +  H +    L
Sbjct: 58  VKYYISKGAI---VDQLGGDLNSTPLHWATRQGHLSMVVQL 95

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  144 bits (365), Expect = 2e-40
 Identities = 57/242 (23%), Positives = 91/242 (37%), Gaps = 25/242 (10%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
            S L  A E G + +   +V+  A+       S    ++ L  AA    +E +  L+   
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANIDT---CSEDQ-RTPLMEAAENNHLEAVKYLIKA- 66

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
                 D  +    T L +AA  G    V+ L+ +G   +N     G T + +A  Y H 
Sbjct: 67  --GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124

Query: 130 DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACS 189
           D ++ LL+       ++       +NIRD      LH AA  G  +    LL        
Sbjct: 125 DLVKLLLSKG-----SD-------INIRDNEENICLHWAAFSGCVDIAEILLAAKC---D 169

Query: 190 STGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAAL 249
               N + G +PLH AAR    +C+   L+  +D    +  G  P   A        A  
Sbjct: 170 LHAVNIH-GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228

Query: 250 LN 251
           ++
Sbjct: 229 MS 230

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  136 bits (346), Expect = 8e-38
 Identities = 54/217 (24%), Positives = 88/217 (40%), Gaps = 31/217 (14%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
            + L  A EN  L+ ++ +++  A        G T        LHLAA  G  EV+  LL
Sbjct: 45  RTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGST-------CLHLAAKKGHYEVVQYLL 97

Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
                  + +  +    TP++ A     +  VK L+  G+ I N    +   CLH+AA+ 
Sbjct: 98  SNG--QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFS 154

Query: 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
           G  D  + LL     +   +       ++  +  G +PLH+AAR+   +CV   L   + 
Sbjct: 155 GCVDIAEILL-----AAKCD-------LHAVNIHGDSPLHIAARENRYDCVVLFLSRDS- 201

Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
               T  N   G TPL  A+    +    ++     D
Sbjct: 202 --DVTLKNKE-GETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  130 bits (331), Expect = 1e-35
 Identities = 63/205 (30%), Positives = 92/205 (44%), Gaps = 19/205 (9%)

Query: 46  KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESG 105
           K+S LH AA  G +++  ML+       N D  +  ++TPLM AA N  L  VK LI++G
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQA---GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL 165
           A + +    +G TCLH AA  GH + +Q LL+  +             VN +D+ G TP+
Sbjct: 68  ALV-DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD-----------VNCQDDGGWTPM 115

Query: 166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV 225
             A      + V  LL  G+        +    +  LH+AA  G ++    LLA   D  
Sbjct: 116 IWATEYKHVDLVKLLLSKGS---DINIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDLH 171

Query: 226 QPDAFGRIPYAIALKYKHQACAALL 250
             +  G  P  IA +     C  L 
Sbjct: 172 AVNIHGDSPLHIAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  120 bits (304), Expect = 8e-32
 Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
           N    ++ K++PL  AA  G +     L+++GA I +  S   RT L  AA   H + ++
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVK 61

Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGG 193
            L+ A      A        V+ +D  G+T LHLAA++G  E V  LL NG +  +    
Sbjct: 62  YLIKAG-----AL-------VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109

Query: 194 NGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            G+   TP+ +A     ++ ++ LL+ G+D    D    I    A        A +L
Sbjct: 110 GGW---TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  143 bits (362), Expect = 4e-40
 Identities = 54/247 (21%), Positives = 90/247 (36%), Gaps = 41/247 (16%)

Query: 12  ESALFVAVENGDLQMIEAMVE------ADPTV---LGMTSGYGKQSALHLAAAYGQIEVL 62
           +S L +A+ + +  +   ++       A       L  T        LHLA    Q E+ 
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQT-------PLHLAVITNQPEIA 61

Query: 63  SMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA-----FILNFDSLQGR 117
             LL       + +  +    TPL +A   G L+ V  L +S        IL   +  G 
Sbjct: 62  EALLGA---GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118

Query: 118 TCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE-SGATPLHLAARQGWSEC 176
           TCLH A+ +G+   ++ L++       A+       VN ++  +G T LHLA      + 
Sbjct: 119 TCLHLASIHGYLGIVELLVSLG-----AD-------VNAQEPCNGRTALHLAVDLQNPDL 166

Query: 177 VHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYA 236
           V  LL  GA     T    Y G +P        S    ++L     + +Q         +
Sbjct: 167 VSLLLKCGADVNRVT----YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222

Query: 237 IALKYKH 243
              + + 
Sbjct: 223 YDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  129 bits (327), Expect = 4e-35
 Identities = 43/206 (20%), Positives = 72/206 (34%), Gaps = 25/206 (12%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ- 68
           ++ L +AV     ++ EA++    DP +       G  + LHLA   G +  + +L    
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRG-NTPLHLACEQGCLASVGVLTQSC 101

Query: 69  --FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
               L++   A N    T L +A+++G L  V+ L+  GA +   +   GRT LH A   
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161

Query: 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
            + D +  LL        A+       VN     G +P  L   +  +     L      
Sbjct: 162 QNPDLVSLLLKCG-----AD-------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL- 208

Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLE 212
                            +       E
Sbjct: 209 ---ENLQMLPESEDEESYDTESEFTE 231

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  118 bits (298), Expect = 6e-31
 Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 20/181 (11%)

Query: 77  ALNRYKQTPLMVAAMNG----KLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCL 132
            L     + L +A ++      +  ++++    AF+ NF +   +T LH A      +  
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIA 61

Query: 133 QALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTG 192
           +ALL A       +         +RD  G TPLHLA  QG    V  L  +       + 
Sbjct: 62  EALLGAG-----CD-------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109

Query: 193 GNG--YPGSTPLHFAARGGSLECIRELLAWGADR-VQPDAFGRIPYAIALKYKHQACAAL 249
                Y G T LH A+  G L  +  L++ GAD   Q    GR    +A+  ++    +L
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169

Query: 250 L 250
           L
Sbjct: 170 L 170

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  143 bits (364), Expect = 6e-40
 Identities = 53/253 (20%), Positives = 81/253 (32%), Gaps = 32/253 (12%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
           ++AL +AV +     ++ ++   A    L + +  G Q+ALHLAA  G+   +  L    
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLG-QTALHLAAILGEASTVEKLYAA- 67

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI------------LNFDSLQGR 117
                     R   T L +A      +C   L++                  +       
Sbjct: 68  --GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 118 TCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECV 177
                 +     +  +                    +   +  G TPLH+A     +E V
Sbjct: 126 APAAVDSQPNPENEEEPRD----EDWRLQ-------LEAENYDGHTPLHVAVIHKDAEMV 174

Query: 178 HTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI 237
             L D GA            G TPLH A    +   +  LL  GAD       GR P   
Sbjct: 175 RLLRDAGA---DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231

Query: 238 ALKYKHQACAALL 250
           AL   +   A LL
Sbjct: 232 ALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  129 bits (328), Expect = 1e-34
 Identities = 43/219 (19%), Positives = 64/219 (29%), Gaps = 31/219 (14%)

Query: 12  ESALFVAVENGDLQMIE------AMVEAD------PTVLGMTSGYGKQSALHLAAAYGQI 59
            +AL +A                     D            T       A   +    + 
Sbjct: 79  HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138

Query: 60  EVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTC 119
           E      D        +A N    TPL VA ++     V+ L ++GA +   +   GRT 
Sbjct: 139 EEEPRDEDW---RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHT 179
           LH A     +  L+ LL A      A+          R   G TPL  A  +        
Sbjct: 196 LHLAVEAQAASVLELLLKAG-----AD-------PTARMYGGRTPLGSALLRPNPILARL 243

Query: 180 LLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
           L  +GA      GG+     +P   +      +   E  
Sbjct: 244 LRAHGA-PEPEDGGDKL---SPCSSSGSDSDSDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  124 bits (314), Expect = 9e-33
 Identities = 51/252 (20%), Positives = 83/252 (32%), Gaps = 35/252 (13%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ--- 68
           AL +A   G+   +E +    A   V       G  +ALHLA          +LL     
Sbjct: 48  ALHLAAILGEASTVEKLYAAGAGVLV---AERGG-HTALHLACRVRAHTCACVLLQPRPS 103

Query: 69  -------FFLYTNTDALNRYKQTPL-MVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL 120
                   +L  + D        P  + +  N +     +  +    +   ++  G T L
Sbjct: 104 HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPL 162

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATPLHLAARQGWSECVHT 179
           H A  +  ++ ++ L  A      A+       +N  +   G TPLHLA     +  +  
Sbjct: 163 HVAVIHKDAEMVRLLRDAG-----AD-------LNKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 180 LLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL 239
           LL  GA   +   G    G TPL  A    +    R L A GA   +       P + + 
Sbjct: 211 LLKAGADPTARMYG----GRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266

Query: 240 KYKHQACAALLN 251
                      +
Sbjct: 267 SDSDSDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  113 bits (285), Expect = 9e-29
 Identities = 36/187 (19%), Positives = 56/187 (29%), Gaps = 24/187 (12%)

Query: 76  DALNRYKQTPLMVAAMNGKLSCVKKLIESGA--FILNFDSLQGRTCLHYAAYYGHSDCLQ 133
             +     T L +A ++     +  L+   A    L+  +  G+T LH AA  G +  ++
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA-------- 185
            L  A      A        V + +  G T LHLA R     C   LL            
Sbjct: 63  KLYAAG-----AG-------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD 110

Query: 186 -LACSSTGGNGYPGSTPLHFAARGGSLECIRELL-AWGADRVQPDAFGRIPYAIALKYKH 243
                S          P    ++             W       +  G  P  +A+ +K 
Sbjct: 111 TYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKD 170

Query: 244 QACAALL 250
                LL
Sbjct: 171 AEMVRLL 177

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 99.2 bits (248), Expect = 1e-23
 Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 13/144 (9%)

Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167
           +  + +  G T LH A  + H   L  LL  +     A       +++++++ G T LHL
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFS-----AGH----EYLDLQNDLGQTALHL 51

Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
           AA  G +  V  L   GA    +  G    G T LH A R  +  C   LL       + 
Sbjct: 52  AAILGEASTVEKLYAAGAGVLVAERG----GHTALHLACRVRAHTCACVLLQPRPSHPRD 107

Query: 228 DAFGRIPYAIALKYKHQACAALLN 251
            +   +  +           A ++
Sbjct: 108 ASDTYLTQSQDCTPDTSHAPAAVD 131

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 93.8 bits (234), Expect = 9e-22
 Identities = 26/174 (14%), Positives = 52/174 (29%), Gaps = 23/174 (13%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
           A   +  N + +      +           +  G  + LH+A  +   E++ +L D    
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEA---ENYDGH-TPLHVAVIHKDAEMVRLLRDA--- 180

Query: 72  YTNTDAL-NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSD 130
             + +       +TPL +A      S ++ L+++GA         GRT L  A    +  
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPI 239

Query: 131 CLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNG 184
             + L         A                 +P   +     S+      +  
Sbjct: 240 LARLLRAHG-----AP-------EPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.3 bits (199), Expect = 4e-17
 Identities = 33/145 (22%), Positives = 49/145 (33%), Gaps = 6/145 (4%)

Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
                E G T LHLA        +  LL   A        N   G T LH AA  G    
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEAST 60

Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL-----NPSSAEPLVWPLQLRNMT 268
           + +L A GA  +  +  G     +A + +   CA +L     +        +  Q ++ T
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 269 DLNPEAKELLEKALMESNEEREKAI 293
                A   ++      NEE  +  
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDE 145

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  141 bits (358), Expect = 2e-39
 Identities = 59/212 (27%), Positives = 85/212 (40%), Gaps = 23/212 (10%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ-FF 70
            L +AV      ++  +V   A P        +G Q+A HLA  +     L  LLD    
Sbjct: 49  PLHLAVITTLPSVVRLLVTAGASPMA---LDRHG-QTAAHLACEHRSPTCLRALLDSAAP 104

Query: 71  LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSD 130
              + +A N    T L VA        V+ L+E GA I   D   GR+ L +A       
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164

Query: 131 CLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSS 190
            +Q LL        AN       VN +  SG++ LH A+ +G    V TL+ +GA    S
Sbjct: 165 MVQLLLQHG-----AN-------VNAQMYSGSSALHSASGRGLLPLVRTLVRSGA---DS 209

Query: 191 TGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
           +  N +   TPL  A     ++ +R      A
Sbjct: 210 SLKNCH-NDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  139 bits (354), Expect = 7e-39
 Identities = 59/251 (23%), Positives = 98/251 (39%), Gaps = 37/251 (14%)

Query: 12  ESALFVAVENGDLQMIEAMVEADPTVLGMTSG--------YGKQSALHLAAAYGQIEVLS 63
           ++ L +AV  G+L  +  +V      L    G           Q+ LHLA       V+ 
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVN-----LFQQGGRELDIYNNLR-QTPLHLAVITTLPSVVR 63

Query: 64  MLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI---LNFDSLQGRTCL 120
           +L+       +  AL+R+ QT   +A  +   +C++ L++S A     L   +  G T L
Sbjct: 64  LLVTA---GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATPLHLAARQGWSECVHT 179
           H A      + +Q LL        A+       ++  D +SG +PL  A        V  
Sbjct: 121 HVAVNTECQETVQLLL-----ERGAD-------IDAVDIKSGRSPLIHAVENNSLSMVQL 168

Query: 180 LLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL 239
           LL +GA   ++   +G    + LH A+  G L  +R L+  GAD    +     P  +A 
Sbjct: 169 LLQHGA-NVNAQMYSGS---SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224

Query: 240 KYKHQACAALL 250
             +        
Sbjct: 225 SRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  112 bits (282), Expect = 1e-28
 Identities = 48/183 (26%), Positives = 68/183 (37%), Gaps = 24/183 (13%)

Query: 76  DALNRYKQTPLMVAAMNGKLSCVKKLIE----SGAFILNFDSLQGRTCLHYAAYYGHSDC 131
              +    TPL +A + G L  V +L+      G  + +  +   +T LH A        
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSV 61

Query: 132 LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSST 191
           ++ L+TA      A+           D  G T  HLA       C+  LLD+ A      
Sbjct: 62  VRLLVTAG-----AS-------PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 109

Query: 192 GGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDA----FGRIPYAIALKYKHQACA 247
               Y G T LH A      E ++ LL  GAD    DA     GR P   A++    +  
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIKSGRSPLIHAVENNSLSMV 166

Query: 248 ALL 250
            LL
Sbjct: 167 QLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 67.9 bits (167), Expect = 3e-13
 Identities = 27/97 (27%), Positives = 38/97 (39%)

Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
               DE G TPLH+A  QG    VH L++                 TPLH A        
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           +R L+  GA  +  D  G+    +A +++   C   L
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  137 bits (347), Expect = 1e-38
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 25/189 (13%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR---YKQTPLMVAAMNGKLSCVKKLIESG 105
           ++H  AA G+++ L   L +       + +N+      TPL+ A+  G++  V+ L+E G
Sbjct: 5   SIHQLAAQGELDQLKEHLRK-----GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL 165
           A   +  + +  + L  A+  G++D +  LL         +       +NI D +G TPL
Sbjct: 60  ADP-HILAKERESALSLASTGGYTDIVGLLLERD-----VD-------INIYDWNGGTPL 106

Query: 166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV 225
             A R    +CV  LL  GA   ++   +GY   TP+  A   G  +  + +        
Sbjct: 107 LYAVRGNHVKCVEALLARGA-DLTTEADSGY---TPMDLAVALGYRKVQQVIENHILKLF 162

Query: 226 QPDAFGRIP 234
           Q +     P
Sbjct: 163 QSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  132 bits (334), Expect = 9e-37
 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 20/170 (11%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
              +   A  G+L  +K+ +  G  ++N    +G T L +A+ +G  + ++ LL      
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG--- 59

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL--ACSSTGGNGYPGST 200
             A+        +I  +   + L LA+  G+++ V  LL+                 G T
Sbjct: 60  --AD-------PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN------GGT 104

Query: 201 PLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           PL +A RG  ++C+  LLA GAD       G  P  +A+   ++    ++
Sbjct: 105 PLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  122 bits (308), Expect = 5e-33
 Identities = 38/172 (22%), Positives = 71/172 (41%), Gaps = 17/172 (9%)

Query: 14  ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYT 73
           ++      G+L  ++  +     ++      G  + L  A+A+G+IE +  LL+      
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERG-FTPLIWASAFGEIETVRFLLEW---GA 60

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
           +   L + +++ L +A+  G    V  L+E    I N     G T L YA    H  C++
Sbjct: 61  DPHILAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
           ALL        A+       +    +SG TP+ LA   G+ +    + ++  
Sbjct: 120 ALLARG-----AD-------LTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 95.2 bits (238), Expect = 3e-23
 Identities = 37/135 (27%), Positives = 47/135 (34%), Gaps = 15/135 (11%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
               +H  A  G  D L+  L         N       VN  DE G TPL  A+  G  E
Sbjct: 2   DSLSIHQLAAQGELDQLKEHL-----RKGDNL------VNKPDERGFTPLIWASAFGEIE 50

Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
            V  LL+ GA              + L  A+ GG  + +  LL    D    D  G  P 
Sbjct: 51  TVRFLLEWGA---DPHILAKE-RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106

Query: 236 AIALKYKHQACAALL 250
             A++  H  C   L
Sbjct: 107 LYAVRGNHVKCVEAL 121

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  138 bits (349), Expect = 2e-38
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 36/235 (15%)

Query: 14  ALFVAVENGDLQMIEAMV--EADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
            +F A+   + +  + +   E D    T +  T             + G+  ++      
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYITDMSDT-------NWWKGTSKGRTGLIPSN--- 64

Query: 69  FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH 128
                           PL  AA  G LS +++ +++   + N     G T L++A + GH
Sbjct: 65  -----YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGH 118

Query: 129 SDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALAC 188
            D ++ L T                +N +++ G T LH AA +G+++ V  LL  GA   
Sbjct: 119 KDIVEMLFTQPN----IE-------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGA--- 164

Query: 189 SSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH 243
            +   N          A        +++     A R   +A   +    +    H
Sbjct: 165 RTDLRNIE-KKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  122 bits (308), Expect = 1e-32
 Identities = 36/211 (17%), Positives = 62/211 (29%), Gaps = 24/211 (11%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           Q  +  A    +      L  +     +   +     T        G+   +        
Sbjct: 13  QVKVFRALYTFEPRTPDELYIE---EGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV--- 66

Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
                 +      LH AA  G+   L+  L                 VN  D++G+T L+
Sbjct: 67  ---AEQAESIDNPLHEAAKRGNLSWLRECLDNR-----VG-------VNGLDKAGSTALY 111

Query: 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ 226
            A   G  + V  L         +       G T LH AA  G  + ++ LLA GA    
Sbjct: 112 WACHGGHKDIVEMLFTQPN-IELNQQNKL--GDTALHAAAWKGYADIVQLLLAKGARTDL 168

Query: 227 PDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
            +   ++ + +A      +       + A  
Sbjct: 169 RNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  118 bits (299), Expect = 3e-31
 Identities = 36/204 (17%), Positives = 63/204 (30%), Gaps = 28/204 (13%)

Query: 9   ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
           + S++  +     G   +I +   A+               LH AA  G +  L   LD 
Sbjct: 43  DMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDN-------PLHEAAKRGNLSWLRECLDN 95

Query: 69  FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLI-ESGAFILNFDSLQGRTCLHYAAYYG 127
                  + L++   T L  A   G    V+ L  +    + N  +  G T LH AA+ G
Sbjct: 96  R---VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKG 151

Query: 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALA 187
           ++D +Q LL        A         ++R+        +A     +  +       A+ 
Sbjct: 152 YADIVQLLLAKG-----AR-------TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

Query: 188 CSSTGGNGYPGSTPLHFAARGGSL 211
             S              +      
Sbjct: 200 TLSNAE----DYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  101 bits (255), Expect = 4e-25
 Identities = 32/173 (18%), Positives = 53/173 (30%), Gaps = 23/173 (13%)

Query: 79  NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
            +  Q  +  A    +     +L      I  + +    T        G +  + +    
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTGLIPSNY-- 65

Query: 139 ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPG 198
                          V  + ES   PLH AA++G    +   LDN        G +   G
Sbjct: 66  ---------------VAEQAESIDNPLHEAAKRGNLSWLRECLDNRV---GVNGLDKA-G 106

Query: 199 STPLHFAARGGSLECIRELLA-WGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           ST L++A  GG  + +  L      +  Q +  G      A    +     LL
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 15/126 (11%), Positives = 24/126 (19%), Gaps = 36/126 (28%)

Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGA--LACSSTGGNGYPGSTPLHFA------- 205
               + G   +  A           L       +  +          T            
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDM------SDTNWWKGTSKGRTG 59

Query: 206 ---------------------ARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ 244
                                A+ G+L  +RE L         D  G      A    H+
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119

Query: 245 ACAALL 250
               +L
Sbjct: 120 DIVEML 125

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  137 bits (348), Expect = 5e-38
 Identities = 45/230 (19%), Positives = 72/230 (31%), Gaps = 43/230 (18%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
              +  ++G            AD      T           AA     + LS LL+    
Sbjct: 18  EYLIEWKDGHSPSWVPSSYIAADVVSEYET-------PWWTAARKADEQALSQLLED--- 67

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC 131
             + DA++   +T L+  A  G   CV+ L E+GA + + D   G T LH AA Y   + 
Sbjct: 68  -RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 126

Query: 132 LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA------ 185
           ++AL+        A+       + + DE G T L LA     +      +  G       
Sbjct: 127 VEALVELG-----AD-------IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 174

Query: 186 -LACSSTGGNGYP-----------GSTPLHFAARGGSLECIRELLAWGAD 223
            +         Y            G    +        +C        A+
Sbjct: 175 VINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  120 bits (302), Expect = 2e-31
 Identities = 35/168 (20%), Positives = 51/168 (30%), Gaps = 20/168 (11%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
               ++   +G            A +++    +  T    AA       L  LL      
Sbjct: 16  AMEYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADEQALSQLLEDRD-- 69

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202
                      V+  DE+G T L   A  G  +CV  L + GA        +   G T L
Sbjct: 70  -----------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA---DLDHRDMRGGLTAL 115

Query: 203 HFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           H AA     E +  L+  GAD    D  G     +A +          
Sbjct: 116 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  111 bits (279), Expect = 2e-28
 Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 26/212 (12%)

Query: 12  ESALFVAVENGDLQMIEAMVE-ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF 70
           E+  + A    D Q +  ++E  D          G+ +AL   A  G  + + +L +   
Sbjct: 46  ETPWWTAARKADEQALSQLLEDRDVDA---VDENGR-TALLFVAGLGSDKCVRLLAEA-- 99

Query: 71  LYTNTDALN-RYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
              + D  + R   T L +AA   +   V+ L+E GA I   +  +G T L  A     +
Sbjct: 100 -GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT 157

Query: 130 DCLQALLTAAR--------TSPVANTWGFSRFVNI--RDESGATPLHLAARQGWSECVHT 179
                 +   R               + ++    I  +   G    +L   +   +C   
Sbjct: 158 TPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWV 217

Query: 180 LLDNGALACSSTGGNGYPGSTPLHFAARGGSL 211
              + A   +            L +A     +
Sbjct: 218 KGVHVAEDVAKD------YEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 34/157 (21%), Positives = 44/157 (28%), Gaps = 37/157 (23%)

Query: 103 ESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA 162
           E    I +  + +G          GHS         A     A+                
Sbjct: 2   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA-----ADV----------VSEYE 46

Query: 163 TPLHLAARQGWSECVHTLL--------DNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
           TP   AAR+   + +  LL        D               G T L F A  GS +C+
Sbjct: 47  TPWWTAARKADEQALSQLLEDRDVDAVDEN-------------GRTALLFVAGLGSDKCV 93

Query: 215 RELLAWGADRVQPDA-FGRIPYAIALKYKHQACAALL 250
           R L   GAD    D   G     +A  Y        L
Sbjct: 94  RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 130

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  134 bits (341), Expect = 6e-38
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 20/175 (11%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
           ++H  AA G++  L+  ++Q       +  +    TPLM AA +G+++ V+ L+++GA  
Sbjct: 6   SVHQLAAQGEMLYLATRIEQ---ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
                    + L  A   G++D ++ LL         +       VN  D +G TPL  A
Sbjct: 63  -QLLGKGRESALSLACSKGYTDIVKMLLDCG-----VD-------VNEYDWNGGTPLLYA 109

Query: 169 ARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
                 +CV  LL++GA   +    +GY     +  A   G     + + +    
Sbjct: 110 VHGNHVKCVKMLLESGADP-TIETDSGY---NSMDLAVALGYRSVQQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  125 bits (318), Expect = 1e-34
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 17/168 (10%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
              +   A  G++  +   IE    I N    +G T L +AA +G    ++ LL      
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNG--- 59

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202
             A+         +  +   + L LA  +G+++ V  LLD G         +   G TPL
Sbjct: 60  --AD-------PQLLGKGRESALSLACSKGYTDIVKMLLDCGV---DVNEYDWN-GGTPL 106

Query: 203 HFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            +A  G  ++C++ LL  GAD       G     +A+   +++   ++
Sbjct: 107 LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  118 bits (299), Expect = 8e-32
 Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 22/174 (12%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
           ++      G++  +   +E          T   G  + L  AAA+GQI V+  LL     
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINH---TDEEG-FTPLMWAAAHGQIAVVEFLLQN--- 58

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC 131
             +   L + +++ L +A   G    VK L++ G  + N     G T L YA +  H  C
Sbjct: 59  GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKC 117

Query: 132 LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
           ++ LL +      A+         I  +SG   + LA   G+      +  +  
Sbjct: 118 VKMLLESG-----AD-------PTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 92.5 bits (231), Expect = 2e-22
 Identities = 35/135 (25%), Positives = 45/135 (33%), Gaps = 16/135 (11%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
               +H  A  G    L   +                 +N  DE G TPL  AA  G   
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQE-----NV-------INHTDEEGFTPLMWAAAHGQIA 50

Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
            V  LL NGA       G      + L  A   G  + ++ LL  G D  + D  G  P 
Sbjct: 51  VVEFLLQNGADPQLLGKG----RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106

Query: 236 AIALKYKHQACAALL 250
             A+   H  C  +L
Sbjct: 107 LYAVHGNHVKCVKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 69.7 bits (172), Expect = 3e-14
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 160 SGATPLHLAARQGWSECVHTLLDNGAL--ACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
           + +  +H  A QG    + T ++   +             G TPL +AA  G +  +  L
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEE------GFTPLMWAAAHGQIAVVEFL 55

Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           L  GAD            ++A    +     +L
Sbjct: 56  LQNGADPQLLGKGRESALSLACSKGYTDIVKML 88

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  137 bits (347), Expect = 1e-37
 Identities = 66/245 (26%), Positives = 94/245 (38%), Gaps = 20/245 (8%)

Query: 6   SCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSML 65
           SC            E     +I   +    ++   T   G+ +ALHLAA Y + +    L
Sbjct: 18  SCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE-TALHLAARYSRSDAAKRL 76

Query: 66  LDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
           L+      + +  +   +TPL  A         + LI + A  L+     G T L  AA 
Sbjct: 77  LEA---SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133

Query: 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
                 L+ L+ +      A+       VN  D+ G + LH AA     +    LL NGA
Sbjct: 134 LAVEGMLEDLINSH-----AD-------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181

Query: 186 LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA 245
              +    N     TPL  AAR GS E  + LL   A+R   D   R+P  IA +  H  
Sbjct: 182 ---NKDMQNNR-EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD 237

Query: 246 CAALL 250
              LL
Sbjct: 238 IVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  126 bits (318), Expect = 1e-33
 Identities = 55/221 (24%), Positives = 83/221 (37%), Gaps = 39/221 (17%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
           E+AL +A         + ++E  AD      +G T        LH A +     V  +L+
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRT-------PLHAAVSADAQGVFQILI 110

Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
                 T+ DA      TPL++AA       ++ LI S A + N     G++ LH+AA  
Sbjct: 111 RNR--ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAV 167

Query: 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
            + D    LL        AN        ++++    TPL LAAR+G  E    LLD+ A 
Sbjct: 168 NNVDAAVVLLKNG-----AN-------KDMQNNREETPLFLAAREGSYETAKVLLDHFA- 214

Query: 187 ACSSTGGN----GYPGSTPLHFAARGGSLECIRELLAWGAD 223
                  N     +    P   A      + +R L      
Sbjct: 215 -------NRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  111 bits (281), Expect = 2e-28
 Identities = 50/190 (26%), Positives = 71/190 (37%), Gaps = 28/190 (14%)

Query: 74  NTDALNRYKQTPLMVAAMNGK-------------LSCVKKLIESGAFILNFDSLQGRTCL 120
           + +       TPLM+A+ +G               + +   I  GA + N     G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           H AA Y  SD  + LL A+     A+        NI+D  G TPLH A           L
Sbjct: 62  HLAARYSRSDAAKRLLEAS-----AD-------ANIQDNMGRTPLHAAVSADAQGVFQIL 109

Query: 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           + N A    +   +G    TPL  AAR      + +L+   AD    D  G+     A  
Sbjct: 110 IRNRATDLDARMHDGT---TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 166

Query: 241 YKHQACAALL 250
             +   A +L
Sbjct: 167 VNNVDAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.9 bits (149), Expect = 1e-10
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 9/101 (8%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
           +SAL  A    ++     +++  A+     M +   + + L LAA  G  E   +LLD F
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKD---MQNNREE-TPLFLAAREGSYETAKVLLDHF 213

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILN 110
               N D  +   + P  +A        V+ L        +
Sbjct: 214 ---ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHH 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  137 bits (348), Expect = 8e-37
 Identities = 43/254 (16%), Positives = 79/254 (31%), Gaps = 38/254 (14%)

Query: 12  ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQ--IEVLSMLLDQF 69
           +    +  E  + ++ E          G T       ALH     G   +E++ +L+   
Sbjct: 112 QMPESLLNECDEREVNEIGSHVK-HCKGQT-------ALHWCVGLGPEYLEMIKILVQL- 162

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI----LNFDSLQGRTCLHYAAY 125
               +  A ++  +TPLM A        +  ++++        L++ + QG + LH+A  
Sbjct: 163 --GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL 220

Query: 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
               D     +         +       VN+ D     PL+L+ R         LL    
Sbjct: 221 INWEDVAMRFVEMG-----ID-------VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD 268

Query: 186 --LACSSTGGNG-------YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYA 236
             L  +    NG             +  AA     E ++ L     + V+    G     
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAV 328

Query: 237 IALKYKHQACAALL 250
              K    A   + 
Sbjct: 329 KRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  136 bits (345), Expect = 2e-36
 Identities = 39/237 (16%), Positives = 71/237 (29%), Gaps = 22/237 (9%)

Query: 12  ESALFVAVENGD--LQMIEAMVE--ADPTVL---GMTSGYGKQSALHLAAAYGQIEVLSM 64
           ++AL   V  G   L+MI+ +V+  A PT       T        L  A  +   E L +
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADET-------PLMRAMEFRNREALDL 191

Query: 65  LLDQFFLYT--NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHY 122
           ++D     +    D  N+   + L  A +        + +E G  + N +  +    L+ 
Sbjct: 192 MMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NMEDNEHTVPLYL 250

Query: 123 AAYYGHSDCLQALLTAARTSPVANTWGFS-RFVNIRDESGATPLHLAARQGWSECVHTLL 181
           +         + LL       +      +   V          +  AA     E +  L 
Sbjct: 251 SVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310

Query: 182 DNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA 238
           +       S       G+       +  +    R  LA  A             A++
Sbjct: 311 EKLDEVVRSLNT----GAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  134 bits (340), Expect = 1e-35
 Identities = 38/254 (14%), Positives = 71/254 (27%), Gaps = 44/254 (17%)

Query: 12  ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
           +  + +AV      ++ A+VE          G        L     + EV  +       
Sbjct: 85  QKPIHLAVMANKTDLVVALVEG-----AKERGQ---MPESLLNECDEREVNEI------- 129

Query: 72  YTNTDALNRYKQTPLMVAAMNGK--LSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
              +   +   QT L      G   L  +K L++ GA           T L  A  + + 
Sbjct: 130 --GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNR 186

Query: 130 DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACS 189
           + L  ++    +            ++  ++ G + LH A    W +     ++ G     
Sbjct: 187 EALDLMMDTVPSKSSLR-------LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239

Query: 190 STGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV-------------QPDAFGRIPYA 236
                    + PL+ + R   +   +ELL      +                        
Sbjct: 240 EDNE----HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295

Query: 237 IALKYKHQACAALL 250
            A     Q    LL
Sbjct: 296 AAADPSKQEVLQLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  128 bits (324), Expect = 2e-33
 Identities = 40/249 (16%), Positives = 69/249 (27%), Gaps = 53/249 (21%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
            + VA   G    +  ++E    P      G T       ALHLA  +G ++    L   
Sbjct: 23  KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT-------ALHLACKFGCVDTAKYLASV 75

Query: 69  FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH 128
                       + Q P+ +A M  K   V  L+E            G+           
Sbjct: 76  -----GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKER-------GQMPESLLNECDE 123

Query: 129 SDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS--ECVHTLLDNGAL 186
            +  +                     +++   G T LH     G    E +  L+  GA 
Sbjct: 124 REVNEIG------------------SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA- 164

Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW-----GADRVQPDAFGRIPYAIALKY 241
           + ++         TPL  A    + E +  ++              +  G      A+  
Sbjct: 165 SPTAKDKADE---TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI 221

Query: 242 KHQACAALL 250
             +  A   
Sbjct: 222 NWEDVAMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  102 bits (256), Expect = 4e-24
 Identities = 34/179 (18%), Positives = 57/179 (31%), Gaps = 33/179 (18%)

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
           N    +      + VAA  G+   V++LIE+G       +  G T LH A  +G  D  +
Sbjct: 12  NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKFGCVDTAK 70

Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGG 193
            L               S         G  P+HLA     ++ V  L++           
Sbjct: 71  YLA--------------SVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAK-------- 108

Query: 194 NGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP--YAIALKYKHQACAALL 250
               G  P          E + E+   G+        G+    + + L  ++     +L
Sbjct: 109 --ERGQMPESLLNECDERE-VNEI---GSH--VKHCKGQTALHWCVGLGPEYLEMIKIL 159

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  133 bits (336), Expect = 7e-36
 Identities = 29/213 (13%), Positives = 73/213 (34%), Gaps = 29/213 (13%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
           A + A+ + +++++  ++   A   +         +  LH AA     +++ +LL     
Sbjct: 34  ASYYAIADNNVRLVCTLLNAGALKNL------LENEFPLHQAATLEDTKIVKILLFS--- 84

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC 131
             +    +    T L  A  +G +  VK  ++    ++ +     +T  ++A        
Sbjct: 85  GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI 144

Query: 132 LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSST 191
           +   L+        +                + +H+  + G  + +  LLD      S+ 
Sbjct: 145 VSYFLSEI-----PS--------TFDLAILLSCIHITIKNGHVDMMILLLDYMT---STN 188

Query: 192 GGNGYPGSTP-LHFAARGGSLECIRELLAWGAD 223
             N      P +  A     +E ++ L  +  +
Sbjct: 189 TNNSL-LFIPDIKLAIDNKDIEMLQALFKYDIN 220

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  132 bits (335), Expect = 1e-35
 Identities = 35/239 (14%), Positives = 65/239 (27%), Gaps = 42/239 (17%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
           E  L  A    D ++++ ++    D       G T       AL+ A   G ++ + + +
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNT-------ALYYAVDSGNMQTVKLFV 115

Query: 67  DQFFLYTNTDALNRY-KQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
            +           +   +T    A M   +S V   +        FD     +C+H    
Sbjct: 116 KK---NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP--STFDLAILLSCIHITIK 170

Query: 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP-LHLAARQGWSECVHTLLDNG 184
            GH D +  LL         +        N  +     P + LA      E +  L    
Sbjct: 171 NGHVDMMILLLDYM-----TS-------TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYD 218

Query: 185 ALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH 243
                    N Y   +           E  + ++    +         +      K   
Sbjct: 219 I--------NIY---SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDE 266

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  129 bits (326), Expect = 2e-34
 Identities = 37/208 (17%), Positives = 66/208 (31%), Gaps = 29/208 (13%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDA-LNRY-KQTPLMVAAMNGKLSCVKKLIES 104
            SA + A A   + ++  LL+         A  N    + PL  AA       VK L+ S
Sbjct: 32  HSASYYAIADNNVRLVCTLLNA-------GALKNLLENEFPLHQAATLEDTKIVKILLFS 84

Query: 105 GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG-AT 163
           G    +    +G T L+YA   G+   ++  +                 +    ++G  T
Sbjct: 85  GLDD-SQFDDKGNTALYYAVDSGNMQTVKLFV-----KKNWR-------LMFYGKTGWKT 131

Query: 164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
             + A        V   L                  + +H   + G ++ +  LL +   
Sbjct: 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILL-----SCIHITIKNGHVDMMILLLDYMTS 186

Query: 224 RVQPDAFGRIPY-AIALKYKHQACAALL 250
               ++   IP   +A+  K       L
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  125 bits (316), Expect = 5e-33
 Identities = 32/199 (16%), Positives = 60/199 (30%), Gaps = 23/199 (11%)

Query: 52  LAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNF 111
                 + + L   L       +T   + +  +    A  +  +  V  L+ +GA     
Sbjct: 5   SRINTWKSKQLKSFLSS----KDTFKADVHGHSASYYAIADNNVRLVCTLLNAGA---LK 57

Query: 112 DSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ 171
           + L+    LH AA    +  ++ LL +       +        +  D+ G T L+ A   
Sbjct: 58  NLLENEFPLHQAATLEDTKIVKILLFSG-----LD-------DSQFDDKGNTALYYAVDS 105

Query: 172 GWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFG 231
           G  + V   +             G+   T  + A     +  +   L+         A  
Sbjct: 106 GNMQTVKLFVKKNWRLMFYG-KTGW--KTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAIL 161

Query: 232 RIPYAIALKYKHQACAALL 250
                I +K  H     LL
Sbjct: 162 LSCIHITIKNGHVDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 30/135 (22%), Positives = 42/135 (31%), Gaps = 21/135 (15%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
           G   L        S  L++ L++                   D  G +  + A       
Sbjct: 1   GMD-LSRINT-WKSKQLKSFLSSKD-------------TFKADVHGHSASYYAIADNNVR 45

Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
            V TLL+ GAL       N      PLH AA     + ++ LL  G D  Q D  G    
Sbjct: 46  LVCTLLNAGALK------NLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL 99

Query: 236 AIALKYKHQACAALL 250
             A+   +     L 
Sbjct: 100 YYAVDSGNMQTVKLF 114

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  132 bits (335), Expect = 1e-35
 Identities = 64/257 (24%), Positives = 98/257 (38%), Gaps = 46/257 (17%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
            L  AV+     ++E ++   ADP +       G  +   LAA  G +++L + L +   
Sbjct: 42  PLHNAVQMSREDIVELLLRHGADPVL---RKKNG-ATPFLLAAIAGSVKLLKLFLSK--- 94

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI---------LNFDSLQGRTCLHY 122
             + +  + Y  T  M AA+ GK+  +K L + GA +                G T L  
Sbjct: 95  GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 123 AAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG----WSECVH 178
           AA  GH + L+ LL        A+       VN  D  G   L  A             H
Sbjct: 155 AAEKGHVEVLKILL----DEMGAD-------VNACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 179 TLLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRELLA-WGADRVQPDAFGRI 233
            LLD+GA        +    G  G TPL  A     L  ++ LL     +    D+ G+ 
Sbjct: 204 LLLDHGA--------DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 234 PYAIALKYKHQACAALL 250
              +A++ K +  A LL
Sbjct: 256 ALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  127 bits (321), Expect = 1e-33
 Identities = 60/259 (23%), Positives = 94/259 (36%), Gaps = 46/259 (17%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
              L  AV+N D+ +++ ++E  A+          G  + LH A    + +++ +LL   
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNF---QEEEGGWTPLHNAVQMSREDIVELLLRH- 61

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
               +     +   TP ++AA+ G +  +K  +  GA + N     G T    AA YG  
Sbjct: 62  --GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKV 118

Query: 130 DCLQALLTAARTSPVANTWGFSRFVNIRDE----------SGATPLHLAARQGWSECVHT 179
             L+ L         AN       VN+R +           GAT L  AA +G  E +  
Sbjct: 119 KALKFLYKRG-----AN-------VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 180 LLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRE----LLAWGADRVQPDAFG 231
           LL          G +       G   L  A        +      LL  GAD       G
Sbjct: 167 LL-------DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219

Query: 232 RIPYAIALKYKHQACAALL 250
           + P  +A++ KH      L
Sbjct: 220 KTPLILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  117 bits (296), Expect = 3e-30
 Identities = 54/230 (23%), Positives = 81/230 (35%), Gaps = 42/230 (18%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLD-- 67
            +   +A   G +++++  +   AD         YG  +A   AA YG+++ L  L    
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVNE---CDFYGF-TAFMEAAVYGKVKALKFLYKRG 128

Query: 68  -----QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLI-ESGAFILNFDSLQGRTCLH 121
                +     + + L +   T LM AA  G +  +K L+ E GA + N     GR  L 
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALI 187

Query: 122 YAAYYGHSDCLQA----LLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECV 177
           +A        ++A    LL        A+       VN+R E G TPL LA  +     V
Sbjct: 188 HALLSSDDSDVEAITHLLL-----DHGAD-------VNVRGERGKTPLILAVEKKHLGLV 235

Query: 178 HTLLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRELLAWGAD 223
             LL                    G T L  A      +    L   GA 
Sbjct: 236 QRLL-------EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 88.7 bits (221), Expect = 7e-20
 Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 17/136 (12%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATPLHLAARQGWS 174
               L  A      D +Q LL        AN       VN ++ E G TPLH A +    
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGG-----AN-------VNFQEEEGGWTPLHNAVQMSRE 52

Query: 175 ECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234
           + V  LL +GA            G+TP   AA  GS++ ++  L+ GAD  + D +G   
Sbjct: 53  DIVELLLRHGADPVLRKKN----GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA 108

Query: 235 YAIALKYKHQACAALL 250
           +  A  Y        L
Sbjct: 109 FMEAAVYGKVKALKFL 124

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  133 bits (338), Expect = 2e-35
 Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 31/225 (13%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
            + L +AV     +++  +++  ADPT+    +    +SALH AAA     ++  +L+  
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTI---YNKSE-RSALHQAAANRDFGMMVYMLNST 222

Query: 70  FLYTNTDALNRYKQTPLMVAAMNG---KLSCVKKLIESGAFILNFDSLQ-------GRTC 119
            L  + + L+R   T LM+ A N    +++  K L+E GA +    + +       GRT 
Sbjct: 223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282

Query: 120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHT 179
           LHYAA   +   ++ L+        +N        + +DE G TP+ LAA++G  E V  
Sbjct: 283 LHYAAQVSNMPIVKYLVGEKG----SN-------KDKQDEDGKTPIMLAAQEGRIEVVMY 331

Query: 180 LLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADR 224
           L+  GA   S    +     T    A        +        +R
Sbjct: 332 LIQQGA---SVEAVDAT-DHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (299), Expect = 6e-30
 Identities = 46/260 (17%), Positives = 81/260 (31%), Gaps = 45/260 (17%)

Query: 14  ALFVAVENGDLQMIEAMVEADPTVL-------------GMTSGYGKQSALHLAAAYGQIE 60
            L     N   +  E ++  +                   T        L LA    +  
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT-------PLMLAVLARRRR 180

Query: 61  VLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSL--QGRT 118
           +++ L+       +    N+ +++ L  AA N     +  ++ S     + + L   G T
Sbjct: 181 LVAYLMKA---GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237

Query: 119 CLHYAAYYGHSDCLQA---LLTAARTSPVAN-TWGFSRFVNIRDESGATPLHLAARQGWS 174
            L   A+    D + +   L+        A   +  +   +     G T LH AA+    
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKG-----AKVDYDGAARKDSEKYKGRTALHYAAQVSNM 292

Query: 175 ECVHTLLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAF 230
             V  L+          G N       G TP+  AA+ G +E +  L+  GA     DA 
Sbjct: 293 PIVKYLV-------GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT 345

Query: 231 GRIPYAIALKYKHQACAALL 250
                 +A    H     + 
Sbjct: 346 DHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  115 bits (291), Expect = 9e-29
 Identities = 39/240 (16%), Positives = 67/240 (27%), Gaps = 34/240 (14%)

Query: 11  SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF 70
           S+ +L  A  +G ++     ++       +                G   +         
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQHY----SLY-------PNPQGYGNGNDFLGDFNHTNL- 84

Query: 71  LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSD 130
                          L   A  G  +  + +      I++      RT LH+ A    ++
Sbjct: 85  --QIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRH--NRTVLHWIASNSSAE 139

Query: 131 CLQALLTAARTSPV---ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALA 187
             + L+       +   A+       VN  D    TPL LA        V  L+  GA  
Sbjct: 140 KSEDLIVHEAKECIAAGAD-------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGA-- 190

Query: 188 CSSTGGNGYPGSTPLHFAARGGSLECIRELL---AWGADRVQPDAFGRIPYAIALKYKHQ 244
              T  N     + LH AA       +  +L       D  + D  G     I    + +
Sbjct: 191 -DPTIYNKS-ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR 248

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  104 bits (261), Expect = 8e-25
 Identities = 36/209 (17%), Positives = 56/209 (26%), Gaps = 33/209 (15%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           Q +L  A+  G I+               + L  Y   P      NG          +  
Sbjct: 38  QHSLLEASYDGYIKR------------QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQ 85

Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNI-RDESGATPL 165
                +  +    LH  A  G     + +                  VNI       T L
Sbjct: 86  IPTEPEP-ESPIKLHTEAA-GSYAITEPIT--------------RESVNIIDPRHNRTVL 129

Query: 166 HLAARQGWSECVHTLLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRELLAWG 221
           H  A    +E    L+ + A  C + G +        +TPL  A        +  L+  G
Sbjct: 130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG 189

Query: 222 ADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AD    +   R     A   +       +
Sbjct: 190 ADPTIYNKSERSALHQAAANRDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 17/150 (11%), Positives = 28/150 (18%), Gaps = 27/150 (18%)

Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
           +      +  L  A+Y G+                          N        P     
Sbjct: 31  HQSITSSQHSLLEASYDGYIKRQ---------------------RNELQHYSLYPNPQGY 69

Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDA 229
             G          N  +    T          LH  A  GS      +     + +    
Sbjct: 70  GNGNDFLGDFNHTNLQIP---TEPEPE-SPIKLHTEAA-GSYAITEPITRESVN-IIDPR 123

Query: 230 FGRIPYAIALKYKHQACAALLNPSSAEPLV 259
             R              +  L    A+  +
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECI 153

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  129 bits (327), Expect = 3e-35
 Identities = 60/208 (28%), Positives = 83/208 (39%), Gaps = 27/208 (12%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           ++ALHLAA Y + +    LL+      + +  +   +TPL  A         + LI + A
Sbjct: 26  ETALHLAARYSRSDAAKRLLEAS---ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82

Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
             L+     G T L  AA       L+ L+     +  A+       VN  D+ G + LH
Sbjct: 83  TDLDARMHDGTTPLILAARLAVEGMLEDLI-----NSHAD-------VNAVDDLGKSALH 130

Query: 167 LAARQGWSECVHTLLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRELLAWGA 222
            AA     +    LL NGA        N         TPL  AAR GS E  + LL   A
Sbjct: 131 WAAAVNNVDAAVVLLKNGA--------NKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182

Query: 223 DRVQPDAFGRIPYAIALKYKHQACAALL 250
           +R   D   R+P  IA +  H     LL
Sbjct: 183 NRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  125 bits (316), Expect = 1e-33
 Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 39/222 (17%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
           E+AL +A         + ++E  AD      +G T        LH A +     V  +L+
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRT-------PLHAAVSADAQGVFQILI 78

Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
                 T+ DA      TPL++AA       ++ LI S A + N     G++ LH+AA  
Sbjct: 79  RNR--ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAV 135

Query: 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
            + D    LL        AN        ++++    TPL LAAR+G  E    LLD+ A 
Sbjct: 136 NNVDAAVVLL-----KNGAN-------KDMQNNREETPLFLAAREGSYETAKVLLDHFA- 182

Query: 187 ACSSTGGN----GYPGSTPLHFAARGGSLECIRELLAWGADR 224
                  N     +    P   A      + +R L  +   R
Sbjct: 183 -------NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  109 bits (274), Expect = 1e-27
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 20/178 (11%)

Query: 75  TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQA 134
            +  +R  +T L +AA   +    K+L+E+ A   N     GRT LH A         Q 
Sbjct: 18  HNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQI 76

Query: 135 LLT--AARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTG 192
           L+   A               ++ R   G TPL LAAR      +  L+++ A   +   
Sbjct: 77  LIRNRAT-------------DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD- 122

Query: 193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
                G + LH+AA   +++    LL  GA++   +     P  +A +      A +L
Sbjct: 123 ---DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  106 bits (267), Expect = 8e-27
 Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 28/192 (14%)

Query: 12  ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
            + L  AV      + + ++    T L      G  + L LAA      +L  L++    
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDG-TTPLILAARLAVEGMLEDLINS--- 114

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC 131
           + + +A++   ++ L  AA    +     L+++GA   +  + +  T L  AA  G  + 
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYET 173

Query: 132 LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSST 191
            + LL        AN        +I D     P  +A  +   + V  L +   +     
Sbjct: 174 AKVLLDHF-----AN-------RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV----- 216

Query: 192 GGNGYPGSTPLH 203
                  S  LH
Sbjct: 217 ------RSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 99.0 bits (248), Expect = 5e-24
 Identities = 44/158 (27%), Positives = 60/158 (37%), Gaps = 15/158 (9%)

Query: 93  GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSR 152
              + +   I  GA + N     G T LH AA Y  SD  + LL A+     A+      
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS-----AD------ 50

Query: 153 FVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLE 212
             NI+D  G TPLH A           L+ N A    +   +G    TPL  AAR     
Sbjct: 51  -ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT---TPLILAARLAVEG 106

Query: 213 CIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            + +L+   AD    D  G+     A    +   A +L
Sbjct: 107 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  127 bits (321), Expect = 7e-35
 Identities = 47/185 (25%), Positives = 67/185 (36%), Gaps = 26/185 (14%)

Query: 39  GMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCV 98
            M         +      G    + + LD      N    + +  +PL  A   G+ + V
Sbjct: 5   FMD-------DIFTQCREGNAVAVRLWLDNTENDLN--QGDDHGFSPLHWACREGRSAVV 55

Query: 99  KKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD 158
           + LI  GA I N  +    T LH AA +GH D +Q LL        A+       +N  +
Sbjct: 56  EMLIMRGARI-NVMNRGDDTPLHLAASHGHRDIVQKLLQYK-----AD-------INAVN 102

Query: 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
           E G  PLH A   G  +    L+ NGAL    +  N Y G  P+  A             
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGALV---SICNKY-GEMPVDKAKAPLRELLRERAE 158

Query: 219 AWGAD 223
             G +
Sbjct: 159 KMGQN 163

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  121 bits (307), Expect = 6e-33
 Identities = 39/168 (23%), Positives = 63/168 (37%), Gaps = 16/168 (9%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
              +      G    V+  +++    LN     G + LH+A   G S  ++ L+      
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG--- 62

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202
             A        +N+ +    TPLHLAA  G  + V  LL   A        N + G+ PL
Sbjct: 63  --AR-------INVMNRGDDTPLHLAASHGHRDIVQKLLQYKA---DINAVNEH-GNVPL 109

Query: 203 HFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           H+A   G  +   +L+A GA     + +G +P   A     +      
Sbjct: 110 HYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  119 bits (302), Expect = 3e-32
 Identities = 42/196 (21%), Positives = 68/196 (34%), Gaps = 27/196 (13%)

Query: 14  ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYT 73
            +F     G+   +   ++     L     +G  S LH A   G+  V+ ML+ +     
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIMR---GA 63

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
             + +NR   TPL +AA +G    V+KL++  A I N  +  G   LHYA ++G     +
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAE 122

Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGG 193
            L+        A        V+I ++ G  P+  A               G         
Sbjct: 123 DLVANG-----AL-------VSICNKYGEMPVDKAKAPLRELLRERAEKMGQ-------- 162

Query: 194 NGYPGSTPLHFAARGG 209
                  P       G
Sbjct: 163 --NLNRIPYKDTFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 65.9 bits (162), Expect = 6e-13
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
                  +    R+G +  V   LDN     +    +G+   +PLH+A R G    +  L
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF---SPLHWACREGRSAVVEML 58

Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           +  GA     +     P  +A  + H+     L
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  123 bits (311), Expect = 2e-33
 Identities = 35/168 (20%), Positives = 51/168 (30%), Gaps = 20/168 (11%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
               ++   +G            A +++    +  T    AA       L  LL      
Sbjct: 15  AMEYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADEQALSQLLEDRD-- 68

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202
                      V+  DE+G T L   A  G  +CV  L + GA        +   G T L
Sbjct: 69  -----------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR---DMRGGLTAL 114

Query: 203 HFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           H AA     E +  L+  GAD    D  G     +A +          
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  122 bits (310), Expect = 3e-33
 Identities = 37/176 (21%), Positives = 58/176 (32%), Gaps = 25/176 (14%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
              +    G                  D ++ Y+ TP   AA       + +L+E    +
Sbjct: 17  EYLIEWKDGHSPSWVPSSYI-----AADVVSEYE-TPWWTAARKADEQALSQLLE-DRDV 69

Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATPLHL 167
            +     GRT L + A  G   C++ L  A      A+       ++ RD   G T LH+
Sbjct: 70  -DAVDENGRTALLFVAGLGSDKCVRLLAEAG-----AD-------LDHRDMRGGLTALHM 116

Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
           AA     E V  L++ GA        +   G T L  A            + +G  
Sbjct: 117 AAGYVRPEVVEALVELGA---DIEVEDER-GLTALELAREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  121 bits (305), Expect = 2e-32
 Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 25/174 (14%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
              +  ++G            AD      T           AA     + LS LL+    
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAADVVSEYET-------PWWTAARKADEQALSQLLED--- 66

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC 131
             + DA++   +T L+  A  G   CV+ L E+GA + + D   G T LH AA Y   + 
Sbjct: 67  -RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEV 125

Query: 132 LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
           ++AL+        A+       + + DE G T L LA     +      +  G 
Sbjct: 126 VEALVELG-----AD-------IEVEDERGLTALELAREILKTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 80.2 bits (199), Expect = 8e-18
 Identities = 32/149 (21%), Positives = 45/149 (30%), Gaps = 21/149 (14%)

Query: 103 ESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA 162
           E    I +  + +G          GHS         A     A+                
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA-----ADV----------VSEYE 45

Query: 163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
           TP   AAR+   + +  LL+      +        G T L F A  GS +C+R L   GA
Sbjct: 46  TPWWTAARKADEQALSQLLE-DRDVDAVDEN----GRTALLFVAGLGSDKCVRLLAEAGA 100

Query: 223 DR-VQPDAFGRIPYAIALKYKHQACAALL 250
           D   +    G     +A  Y        L
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEAL 129

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 60.2 bits (147), Expect = 6e-11
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 8/97 (8%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
           AL      G  + +  + E  AD     M  G    +ALH+AA Y + EV+  L++    
Sbjct: 79  ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG---LTALHMAAGYVRPEVVEALVEL--- 132

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
             + +  +    T L +A    K +     ++ G  I
Sbjct: 133 GADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI 169

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  127 bits (323), Expect = 2e-33
 Identities = 46/260 (17%), Positives = 85/260 (32%), Gaps = 42/260 (16%)

Query: 13  SALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF 70
             L  A    + +++  +     +      + G    + LHLAA Y ++ ++ +LL    
Sbjct: 27  ELLEAARSGNEEKLMALLTPLNVNCHA---SDGRK-STPLHLAAGYNRVRIVQLLLQHG- 81

Query: 71  LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSD 130
              +  A ++    PL  A   G     + L++ GA + N   L   T LH AA     +
Sbjct: 82  --ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVE 138

Query: 131 CLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSS 190
               LL     S  A+         + +  G + + +A      E +       +L  ++
Sbjct: 139 VCSLLL-----SHGAD-------PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAA 186

Query: 191 TGGN-----------------GYPGSTPLHFAARGG---SLECIRELLAWGADRVQPDAF 230
              +                      T LH A         +    LL  GA+  + +  
Sbjct: 187 READLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD 246

Query: 231 GRIPYAIALKYKHQACAALL 250
              P  +A +  H     +L
Sbjct: 247 FMTPLHVAAERAHNDVMEVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  124 bits (314), Expect = 3e-32
 Identities = 55/268 (20%), Positives = 93/268 (34%), Gaps = 60/268 (22%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
              L  A   G  ++ E +++  A      +   T        LH AA+  ++EV S+LL
Sbjct: 92  LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT-------PLHEAASKNRVEVCSLLL 144

Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVK---------------------KLIESG 105
                  +   +N + ++ + +A        +                      K +   
Sbjct: 145 SH---GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE 201

Query: 106 AFILNFDSLQGRTCLHYAAYYGHSDCLQA---LLTAARTSPVANTWGFSRFVNIRDESGA 162
                       T LH A    H    Q    LL        AN       VN +++   
Sbjct: 202 IINFKQPQ-SHETALHCAVASLHPKRKQVAELLL-----RKGAN-------VNEKNKDFM 248

Query: 163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
           TPLH+AA +  ++ +  L  +GA   ++    G    T LH AA  G L+  R LL++G+
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGA-KMNALDSLGQ---TALHRAALAGHLQTCRLLLSYGS 304

Query: 223 DRVQPDAFGRIPYAIALKYKHQACAALL 250
           D       G        +  ++A   +L
Sbjct: 305 DPSIISLQGFTA----AQMGNEAVQQIL 328

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  122 bits (309), Expect = 2e-31
 Identities = 50/248 (20%), Positives = 84/248 (33%), Gaps = 49/248 (19%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLD-- 67
            + L  A     +++   ++   ADPT+    + +GK SA+ +A      E L+      
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTL---VNCHGK-SAVDMAPTPELRERLTYEFKGH 180

Query: 68  --------------QFFLYTNTDALNR--YKQTPLMVAAMNG---KLSCVKKLIESGAFI 108
                         +  L        +    +T L  A  +    +    + L+  GA +
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240

Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
            N  +    T LH AA   H+D ++ L         A        +N  D  G T LH A
Sbjct: 241 -NEKNKDFMTPLHVAAERAHNDVMEVLHKHG-----AK-------MNALDSLGQTALHRA 287

Query: 169 ARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPD 228
           A  G  +    LL  G+   S     G+   T           E ++++L+        D
Sbjct: 288 ALAGHLQTCRLLLSYGS-DPSIISLQGF---TAAQMGN-----EAVQQILSESTPMRTSD 338

Query: 229 AFGRIPYA 236
              R+  A
Sbjct: 339 VDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  121 bits (305), Expect = 6e-31
 Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 20/180 (11%)

Query: 44  YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE 103
           Y K   L  A +  + +++++L        N  A +  K TPL +AA   ++  V+ L++
Sbjct: 23  YKKDELLEAARSGNEEKLMALLTPL---NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ 79

Query: 104 SGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT 163
            GA + +     G   LH A  YGH +  + LL        A        VN  D    T
Sbjct: 80  HGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHG-----AC-------VNAMDLWQFT 126

Query: 164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
           PLH AA +   E    LL +GA   +    +G    + +  A      E +       + 
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGADP-TLVNCHGK---SAVDMAPTPELRERLTYEFKGHSL 182

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (288), Expect = 2e-28
 Identities = 51/209 (24%), Positives = 76/209 (36%), Gaps = 35/209 (16%)

Query: 44  YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG-KLSCVKKLI 102
           +GK SAL LA    +                      YK+  L+ AA +G +   +  L 
Sbjct: 3   FGK-SALDLADPSAKA----------------VLTGEYKKDELLEAARSGNEEKLMALLT 45

Query: 103 ESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA 162
                  +    +  T LH AA Y     +Q LL        A+       V+ +D+ G 
Sbjct: 46  PLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLL-----QHGAD-------VHAKDKGGL 92

Query: 163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
            PLH A   G  E    LL +GA   ++     +   TPLH AA    +E    LL+ GA
Sbjct: 93  VPLHNACSYGHYEVTELLLKHGACV-NAMDLWQF---TPLHEAASKNRVEVCSLLLSHGA 148

Query: 223 DRVQPDAFGRIPYAIALKYKHQACAALLN 251
           D    +  G+    +A   + +       
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEF 177

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  107 bits (270), Expect = 4e-26
 Identities = 42/220 (19%), Positives = 71/220 (32%), Gaps = 49/220 (22%)

Query: 12  ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGK-------------------QSALHL 52
           +SA+ +A      + +    +    +                            ++ALH 
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHC 217

Query: 53  AAAYG---QIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
           A A     + +V  +LL +     N +  N+   TPL VAA       ++ L + GA + 
Sbjct: 218 AVASLHPKRKQVAELLLRK---GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM- 273

Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
           N     G+T LH AA  GH    + LL+       ++        +I    G T   +  
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYG-----SD-------PSIISLQGFTAAQMGN 321

Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
                E V  +L                    L  A++ G
Sbjct: 322 -----EAVQQILSESTPM------RTSDVDYRLLEASKAG 350

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  124 bits (313), Expect = 4e-33
 Identities = 48/242 (19%), Positives = 85/242 (35%), Gaps = 53/242 (21%)

Query: 12  ESALFVAVENGDLQMIEAMVE------ADP---TVLGMTSGYGKQSALHLAAAYGQIEVL 62
           ES L +A +  D   ++A+ +       +      +G T       ALH+AA Y  +E  
Sbjct: 4   ESPLLLAAKEND---VQALSKLLKFEGCEVHQRGAMGET-------ALHIAALYDNLEAA 53

Query: 63  SMLLDQ--FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI------------ 108
            +L++     ++    +     QT L +A +N  ++ V+ L+  GA +            
Sbjct: 54  MVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR 113

Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
            +     G   L +AA  G  + ++ L+        A+       +  +D  G T LH+ 
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-----AD-------IRAQDSLGNTVLHIL 161

Query: 169 ARQGWSECVHT----LLDNGA---LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG 221
             Q            LL       L       N   G TP   A   G++   + L+   
Sbjct: 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ-GLTPFKLAGVEGNIVMFQHLMQKR 220

Query: 222 AD 223
             
Sbjct: 221 KH 222

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  122 bits (308), Expect = 2e-32
 Identities = 50/221 (22%), Positives = 82/221 (37%), Gaps = 25/221 (11%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLY--TNTDALNRYKQTPLMVAAMNGKLSCVKKLIES 104
           +S L LAA    ++ LS LL     +            +T L +AA+   L     L+E+
Sbjct: 4   ESPLLLAAKENDVQALSKLL----KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA 59

Query: 105 GAFIL----NFDSLQGRTCLHYAAYYGHSDCLQALLTA-ARTSPVANTWGFSRFVNIRDE 159
              ++      +  +G+T LH A    + + ++ALL   A  S  A    F    +    
Sbjct: 60  APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIY 119

Query: 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRE--- 216
            G  PL  AA  G  E V  L+++GA   +     G    T LH      +     +   
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADIRAQD-SLGN---TVLHILILQPNKTFACQMYN 175

Query: 217 -LLAWGAD------RVQPDAFGRIPYAIALKYKHQACAALL 250
            LL++          + P+  G  P+ +A    +      L
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 33/150 (22%), Positives = 45/150 (30%), Gaps = 27/150 (18%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
             + L  AA       L  LL                 V+ R   G T LH+AA     E
Sbjct: 3   WESPLLLAAKENDVQALSKLLK----FEGCE-------VHQRGAMGETALHIAALYDNLE 51

Query: 176 CVHTLLDNGA--LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD---------- 223
               L++     +    T      G T LH A    ++  +R LLA GA           
Sbjct: 52  AAMVLMEAAPELVFEPMTSELYE-GQTALHIAVINQNVNLVRALLARGASVSARATGSVF 110

Query: 224 ---RVQPDAFGRIPYAIALKYKHQACAALL 250
                    +G  P + A     +    LL
Sbjct: 111 HYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 19/109 (17%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
           E  L  A   G  +++  ++E  AD      LG T        LH+            + 
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT-------VLHILILQPNKTFACQMY 174

Query: 67  DQFFLY-------TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
           +    Y       +     N    TP  +A + G +   + L++    I
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  121 bits (307), Expect = 5e-33
 Identities = 55/183 (30%), Positives = 73/183 (39%), Gaps = 22/183 (12%)

Query: 40  MTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVK 99
           M   +G    L  AAA G +E L+ LL       N +A N + +T L V    G     +
Sbjct: 1   MAEPWGN--ELASAAARGDLEQLTSLLQN---NVNVNAQNGFGRTALQVMK-LGNPEIAR 54

Query: 100 KLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE 159
           +L+  GA   +     G   +H AA  G  D LQ LL        A+       VNI D 
Sbjct: 55  RLLLRGANP-DLKDRTGFAVIHDAARAGFLDTLQTLL-----EFQAD-------VNIEDN 101

Query: 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219
            G  PLHLAA++G    V  L+ + A         G    T    A   G  E +  + A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD---TACDLARLYGRNEVVSLMQA 158

Query: 220 WGA 222
            GA
Sbjct: 159 NGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  103 bits (259), Expect = 2e-26
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 27/173 (15%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
              L  AA  G L  +  L+++   + N  +  GRT L      G+ +  + LL      
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRG--- 60

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN----GYPG 198
             AN        +++D +G   +H AAR G+ + + TLL+  A        +       G
Sbjct: 61  --AN-------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA--------DVNIEDNEG 103

Query: 199 STPLHFAARGGSLECIRELLAWGADRV-QPDAFGRIPYAIALKYKHQACAALL 250
           + PLH AA+ G L  +  L+   A  V   +  G     +A  Y      +L+
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 80.9 bits (201), Expect = 2e-18
 Identities = 38/139 (27%), Positives = 50/139 (35%), Gaps = 25/139 (17%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
               L  AA  G  + L +LL         N       VN ++  G T L +    G  E
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNN-----VN-------VNAQNGFGRTALQVMK-LGNPE 51

Query: 176 CVHTLLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFG 231
               LL  GA        N       G   +H AAR G L+ ++ LL + AD    D  G
Sbjct: 52  IARRLLLRGA--------NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG 103

Query: 232 RIPYAIALKYKHQACAALL 250
            +P  +A K  H      L
Sbjct: 104 NLPLHLAAKEGHLRVVEFL 122

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  123 bits (311), Expect = 6e-33
 Identities = 54/240 (22%), Positives = 85/240 (35%), Gaps = 34/240 (14%)

Query: 14  ALFVAVENGDLQMIE-------AMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
            L  A    +   ++       +++             G+   LH + ++   E+ S LL
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQ-------KDQDGR-IPLHWSVSFQAHEITSFLL 56

Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE--SGAFILNFDSLQGRTCLHYAA 124
            +       D  +    TP  +A   G L  VK L +      + N  + QG TCLH A 
Sbjct: 57  SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAV 115

Query: 125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNG 184
                +  Q L+        A+       V I+D+    PLH AA  G  + +  L   G
Sbjct: 116 GKKWFEVSQFLI-----ENGAS-------VRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

Query: 185 ALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW-GADRVQPDAFGRIPYAIALKYKH 243
             A +     G+   TPL  A   G  +    L+   GA+    D  G     +AL  + 
Sbjct: 164 KSAVNWQDKQGW---TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV 220

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  121 bits (305), Expect = 5e-32
 Identities = 50/217 (23%), Positives = 75/217 (34%), Gaps = 28/217 (12%)

Query: 38  LGMTSGYGKQSALHLAAAYGQI-EVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLS 96
           +           LH A    +  +V  +L  +    +     ++  + PL  +       
Sbjct: 1   MSNY-------PLHQACMENEFFKVQELLHSK---PSLLLQKDQDGRIPLHWSVSFQAHE 50

Query: 97  CVKKLIESGAFILNFDSL--QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFV 154
               L+     +   D     G T  H A   G+ + +++L          +       +
Sbjct: 51  ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD---RPLKPD-------L 100

Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
           N     G T LHLA  + W E    L++NGA   S    + +    PLH AA  GSL+ I
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGA---SVRIKDKF-NQIPLHRAASVGSLKLI 156

Query: 215 RELLAWGADRV-QPDAFGRIPYAIALKYKHQACAALL 250
             L   G   V   D  G  P   AL   H   A LL
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  114 bits (288), Expect = 1e-29
 Identities = 40/208 (19%), Positives = 75/208 (36%), Gaps = 25/208 (12%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
            L  +V     ++   ++    +  +       G  +  H+A + G +EV+  L D+  L
Sbjct: 39  PLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW-TPFHIACSVGNLEVVKSLYDRP-L 96

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC 131
             + + +     T L +A         + LIE+GA +        +  LH AA  G    
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKL 155

Query: 132 LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN-GALACSS 190
           ++ L          +       VN +D+ G TPL  A  +G  +    L++  GA     
Sbjct: 156 IELLC-----GLGKSA------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA---EY 201

Query: 191 TGGNGYPGSTPLHFAARGGSLECIRELL 218
              +   G+     A      E +++  
Sbjct: 202 DLVDNK-GAKAEDVALN----EQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  101 bits (255), Expect = 5e-25
 Identities = 40/177 (22%), Positives = 68/177 (38%), Gaps = 31/177 (17%)

Query: 14  ALFVAVENGDLQMIEAMVE----ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
              +A   G+L++++++ +     D    T  G+T        LHLA      EV   L+
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVT-------CLHLAVGKKWFEVSQFLI 127

Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
           +      +    +++ Q PL  AA  G L  ++ L   G   +N+   QG T L +A   
Sbjct: 128 EN---GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184

Query: 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN 183
           GH D    L+        A         ++ D  GA    +A  +   +     L+N
Sbjct: 185 GHGDAAVLLVEKYG----AE-------YDLVDNKGAKAEDVALNE---QVKKFFLNN 227

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  120 bits (305), Expect = 2e-32
 Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 36/211 (17%)

Query: 12  ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
           E    +  E    Q ++ +             Y + + L +A   G    +  L++ F  
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNY-------RDSYNR-TPLMVACMLGMENAIDKLVENF-- 58

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC 131
               +  +    T L+ A  N +L   +KL+  G+ + N     G+T L ++  +G+S+ 
Sbjct: 59  -DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSIIFGYSEM 116

Query: 132 LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSST 191
              LL        AN       VN R+  G TPL +A++ G SE V  LL+ GA      
Sbjct: 117 SYFLL-----EHGAN-------VNDRNLEGETPLIVASKYGRSEIVKKLLELGA------ 158

Query: 192 GGN----GYPGSTPLHFAARGGSLECIRELL 218
             +       G T    A   G  E I+   
Sbjct: 159 --DISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  119 bits (300), Expect = 1e-31
 Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 34/209 (16%)

Query: 46  KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESG 105
            +    +       + L  L +           + Y +TPLMVA M G  + + KL+E+ 
Sbjct: 8   GEIVEKIKDEKSINQNLDFLRN---------YRDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL 165
             +     ++G T L +A         + LL     S  +N       VN +D SG TPL
Sbjct: 59  DKL-EDKDIEGSTALIWAVKNNRLGIAEKLL-----SKGSN-------VNTKDFSGKTPL 105

Query: 166 HLAARQGWSECVHTLLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRELLAWG 221
             +   G+SE  + LL++GA        N       G TPL  A++ G  E +++LL  G
Sbjct: 106 MWSIIFGYSEMSYFLLEHGA--------NVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157

Query: 222 ADRVQPDAFGRIPYAIALKYKHQACAALL 250
           AD    D  G    A A  +  Q    + 
Sbjct: 158 ADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 95.9 bits (240), Expect = 2e-23
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 30/178 (16%)

Query: 14  ALFVAVENGDLQMIE------AMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLD 67
            L VA   G    I+        +E            G  +AL  A    ++ +   LL 
Sbjct: 38  PLMVACMLGMENAIDKLVENFDKLED-------KDIEGS-TALIWAVKNNRLGIAEKLLS 89

Query: 68  QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127
           +    +N +  +   +TPLM + + G       L+E GA + N  +L+G T L  A+ YG
Sbjct: 90  K---GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYG 145

Query: 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
            S+ ++ LL        A+       ++ RD +G T    A   G  E +    +   
Sbjct: 146 RSEIVKKLLELG-----AD-------ISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 91.3 bits (228), Expect = 1e-21
 Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 31/177 (17%)

Query: 78  LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLT 137
           +++  +    +         +  L        +      RT L  A   G  + +  L+ 
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRNYR----DSY---NRTPLMVACMLGMENAIDKLVE 56

Query: 138 AARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN--- 194
                           +  +D  G+T L  A +         LL  G+        N   
Sbjct: 57  NF-----DK-------LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS--------NVNT 96

Query: 195 -GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
             + G TPL ++   G  E    LL  GA+    +  G  P  +A KY        L
Sbjct: 97  KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 55.1 bits (134), Expect = 4e-09
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 10/96 (10%)

Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
           +  D++G     +   +  ++ +  L +           + Y   TPL  A   G    I
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNY---------RDSY-NRTPLMVACMLGMENAI 51

Query: 215 RELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            +L+         D  G      A+K      A  L
Sbjct: 52  DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  121 bits (305), Expect = 2e-32
 Identities = 49/213 (23%), Positives = 78/213 (36%), Gaps = 25/213 (11%)

Query: 44  YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE 103
           Y   + L  A      +V  +L D        D ++    TPL +A  N  +   K LI+
Sbjct: 4   YEVGALLEAANQRDTKKVKEILQDT---TYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 104 SGAFILNFDSLQGRTCLHYAAYYGHSDCLQALL-TAARTSPVANTWGFSRFVNIRDESGA 162
            GA I N  +    +   YA   G ++ L  +L  A       +       +N  +  G 
Sbjct: 61  RGADI-NLQNSISDSPYLYAGAQGRTEILAYMLKHAT-----PD-------LNKHNRYGG 107

Query: 163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAA-----RGGSLECIREL 217
             L  AA +G  + V  LL++G          GY   T L  A           + ++ L
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY---TALIEAVGLREGNQLYQDIVKLL 164

Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           +  GAD+   D  GR     A +  +   + +L
Sbjct: 165 MENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  116 bits (294), Expect = 8e-31
 Identities = 41/214 (19%), Positives = 80/214 (37%), Gaps = 29/214 (13%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
            + L  A +    ++ E + +              G  + L++A     IE+   L+D+ 
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDE---VDTEGN-TPLNIAVHNNDIEIAKALIDR- 61

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
               + +  N    +P + A   G+   +  +++     LN  +  G   L  AA  GH 
Sbjct: 62  --GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 130 DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHT-----LLDNG 184
           D ++ LL   R     +       ++ +++ G T L  A        ++      L++NG
Sbjct: 120 DNVKLLLEDGR----ED-------IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168

Query: 185 ALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
           A   S    +G    T + +A + G  E  + L 
Sbjct: 169 A-DQSIKDNSGR---TAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  105 bits (266), Expect = 8e-27
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 22/178 (12%)

Query: 79  NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
                  L  A         + L ++   + +    +G T L+ A +    +  +AL+  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 139 ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPG 198
                 A+       +N+++    +P   A  QG +E +  +L +     +     G   
Sbjct: 62  G-----AD-------INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGG-- 107

Query: 199 STPLHFAARGGSLECIRELLAWG-ADRVQPDAFGRIP--YAIALKYK---HQACAALL 250
              L  AA  G ++ ++ LL  G  D    + FG      A+ L+     +Q    LL
Sbjct: 108 -NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.5 bits (166), Expect = 3e-13
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 4/95 (4%)

Query: 156 IRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIR 215
           ++       L  A ++   +    L D            G    TPL+ A     +E  +
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTY-QVDEVDTEGN---TPLNIAVHNNDIEIAK 56

Query: 216 ELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            L+  GAD    ++    PY  A         A +
Sbjct: 57  ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 21/101 (20%)

Query: 14  ALFVAVENGDLQMIEAMVE---ADPTV---LGMTSGYGKQSALHLAAAY-----GQIEVL 62
           AL  A E G +  ++ ++E    D       G T       AL  A           +++
Sbjct: 109 ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT-------ALIEAVGLREGNQLYQDIV 161

Query: 63  SMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE 103
            +L++      +    +   +T +  A   G     K L +
Sbjct: 162 KLLMEN---GADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  121 bits (305), Expect = 9e-32
 Identities = 43/252 (17%), Positives = 72/252 (28%), Gaps = 51/252 (20%)

Query: 14  ALFVAVENGDLQMIEAMVE------ADPTVLGMTSGYGKQSALHLAA---AYGQIEVLSM 64
            LF  V  G    +E ++          T          ++ L  A    + G+ + + +
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 65  LLDQF--------FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI-------- 108
           LLD          F+ +    +    QT L +A        V+ L+E GA +        
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127

Query: 109 -----LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT 163
                       G   L  AA       +  L         A+       +  +D  G T
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT--ENGHKQAD-------LRRQDSRGNT 178

Query: 164 PLHLAARQG---------WSECVHTLLDNGALACSSTGGNGYP---GSTPLHFAARGGSL 211
            LH                ++    LL   A     T         G +PL  AA+ G +
Sbjct: 179 VLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI 238

Query: 212 ECIRELLAWGAD 223
              + ++     
Sbjct: 239 GIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  105 bits (264), Expect = 4e-26
 Identities = 37/202 (18%), Positives = 60/202 (29%), Gaps = 34/202 (16%)

Query: 78  LNRYKQTPLMVAAMNGK----LSCVKKLIESGAFILNFDSLQ---GRTCLHYAA---YYG 127
           +  + +  L      G        +  L+     + + +  +   G+TCL  A      G
Sbjct: 1   MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAG 60

Query: 128 HSDCLQALLTAARTSPVANTWGFSRFVNI----RDESGATPLHLAARQGWSECVHTLLDN 183
            +D +  LL  A       T     F+N         G T LH+A  +     V  L++ 
Sbjct: 61  RNDTIPILLDIA-----EKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK 115

Query: 184 GA----------LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDA---F 230
           GA                GG  Y G  PL  AA       +  L   G  +         
Sbjct: 116 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR 175

Query: 231 GRIP--YAIALKYKHQACAALL 250
           G       +A+    +     +
Sbjct: 176 GNTVLHALVAIADNTRENTKFV 197

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 97.9 bits (244), Expect = 2e-23
 Identities = 35/203 (17%), Positives = 65/203 (32%), Gaps = 29/203 (14%)

Query: 12  ESALFVAVEN---GDLQMIEAMVEADPTVLGMTSG---------YGKQSALHLAAAYGQI 59
           ++ L  A+ N   G    I  +++       M            Y  Q+ALH+A      
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106

Query: 60  EVLSMLLDQ-----------FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
             + +L+++           FF   +      + + PL +AA   +   V  L E+G   
Sbjct: 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166

Query: 109 --LNFDSLQGRTCLHYAAYYGHSDCLQALLTAART----SPVANTWGFSRFVNIRDESGA 162
             L     +G T LH       +                   A  +  +    + +  G 
Sbjct: 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGL 226

Query: 163 TPLHLAARQGWSECVHTLLDNGA 185
           +PL +AA+ G       ++    
Sbjct: 227 SPLMMAAKTGKIGIFQHIIRREI 249

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  116 bits (292), Expect = 3e-31
 Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 19/151 (12%)

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
               L       L  AA  G++  V++L+E+GA   N  +  GR  +      G +   +
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAE 61

Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGAT-PLHLAARQGWSECVHTLLDNGALACSSTG 192
            LL        A         N  D +  T P+H AAR+G+ + +  L   GA       
Sbjct: 62  LLLLHG-----AE-------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA---RLDV 106

Query: 193 GNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
            + + G  P+  A   G  +  R L A   D
Sbjct: 107 CDAW-GRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  107 bits (271), Expect = 3e-28
 Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 18/138 (13%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
            L  AAA GQ+E +  LL+      + +ALNR+ + P+ V    G     + L+  GA  
Sbjct: 15  GLATAAARGQVETVRQLLEA---GADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEP 70

Query: 109 LNFDSLQGRTC-LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167
            N       T  +H AA  G  D L  L  A      A        +++ D  G  P+ L
Sbjct: 71  -NCADPATLTRPVHDAAREGFLDTLVVLHRAG-----AR-------LDVCDAWGRLPVDL 117

Query: 168 AARQGWSECVHTLLDNGA 185
           A  QG  +    L     
Sbjct: 118 AEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 95.6 bits (239), Expect = 7e-24
 Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 16/135 (11%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
               L  AA  G  + ++ LL A      A+        N  +  G  P+ +    G ++
Sbjct: 12  SDAGLATAAARGQVETVRQLLEAG-----AD-------PNALNRFGRRPIQVMM-MGSAQ 58

Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
               LL +GA        +    + P+H AAR G L+ +  L   GA     DA+GR+P 
Sbjct: 59  VAELLLLHGA---EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPV 115

Query: 236 AIALKYKHQACAALL 250
            +A +  H+  A  L
Sbjct: 116 DLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 62.5 bits (153), Expect = 4e-12
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
            + V +  G  Q+ E ++   A+P              +H AA  G ++ L +L      
Sbjct: 48  PIQVMM-MGSAQVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRA--- 100

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
               D  + + + P+ +A   G     + L  +  
Sbjct: 101 GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  118 bits (299), Expect = 4e-31
 Identities = 34/197 (17%), Positives = 63/197 (31%), Gaps = 18/197 (9%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           Q +L         +  S  +            N      L+ +++ G+   V+++I    
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAH---GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
              +  + +G T LH A   GH++ ++ L+         N       VN  D  G TPLH
Sbjct: 62  DP-SLPNDEGITALHNAVCAGHTEIVKFLVQFG-----VN-------VNAADSDGWTPLH 108

Query: 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ 226
            AA     +    L+++GA A  +   +    +         G  +C + L         
Sbjct: 109 CAASCNNVQVCKFLVESGA-AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167

Query: 227 PDAFGRIPYAIALKYKH 243
            +               
Sbjct: 168 MNKGVIYALWDYEPQND 184

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  115 bits (290), Expect = 8e-30
 Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 25/173 (14%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
           Q  L             + I  G  +  F+ L     L  ++  G  D +Q ++      
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRV-KFNPL-PLALLLDSSLEGEFDLVQRII-----Y 58

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL--ACSSTGGNGYPGST 200
            V +        ++ ++ G T LH A   G +E V  L+  G    A  S       G T
Sbjct: 59  EVDD-------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD------GWT 105

Query: 201 PLHFAARGGSLECIRELLAWGAD---RVQPDAFGRIPYAIALKYKHQACAALL 250
           PLH AA   +++  + L+  GA        D          ++  +  C+  L
Sbjct: 106 PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  108 bits (272), Expect = 3e-27
 Identities = 33/210 (15%), Positives = 60/210 (28%), Gaps = 38/210 (18%)

Query: 12  ESALFVAVENGDLQMIE------AMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSML 65
           + +L         +           V+ +P  L +         L  ++  G+ +++  +
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVKFNP--LPLA-------LLLDSSLEGEFDLVQRI 56

Query: 66  LDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
           + +     +    N    T L  A   G    VK L++ G  + N     G T LH AA 
Sbjct: 57  IYE---VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAAS 112

Query: 126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG---ATPLHLAARQGWSECVHTLLD 182
             +    + L+ +      A        V     S    A        +G+++C   L  
Sbjct: 113 CNNVQVCKFLVESG-----AA-------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 160

Query: 183 NGALACSSTGGNGYPGSTPLHFAARGGSLE 212
                    G         L         E
Sbjct: 161 VQE----KMGIMNKGVIYALWDYEPQNDDE 186

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 17/135 (12%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
           G+  L               +                 V   +      L  ++ +G  +
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHG-----MR-------VKF-NPLPLALLLDSSLEGEFD 51

Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
            V  ++         +  N   G T LH A   G  E ++ L+ +G +    D+ G  P 
Sbjct: 52  LVQRIIYEVD---DPSLPNDE-GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107

Query: 236 AIALKYKHQACAALL 250
             A    +      L
Sbjct: 108 HCAASCNNVQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 7/94 (7%)

Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP-GSTPLHFAARGGSLECIRE 216
           + +G   L    R    +     + +G            P     L  ++  G  + ++ 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRV------KFNPLPLALLLDSSLEGEFDLVQR 55

Query: 217 LLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           ++    D   P+  G      A+   H      L
Sbjct: 56  IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL 89

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  115 bits (291), Expect = 6e-31
 Identities = 43/165 (26%), Positives = 59/165 (35%), Gaps = 27/165 (16%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
            L  AAA G++E +  LL+      N +A N Y + P+ V  M G     + L+  GA  
Sbjct: 15  WLATAAARGRVEEVRALLEA---GANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEP 70

Query: 109 LNFDSLQGRTC-LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167
            N       T  +H AA  G  D L  L  A      A        +++RD  G  P+ L
Sbjct: 71  -NCADPATLTRPVHDAAREGFLDTLVVLHRAG-----AR-------LDVRDAWGRLPVDL 117

Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLE 212
           A   G  +    L           G     GS      A  G  +
Sbjct: 118 AEELGHRDVARYLRAAAG------GTR---GSNHARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  112 bits (284), Expect = 7e-30
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 19/149 (12%)

Query: 76  DALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
            +        L  AA  G++  V+ L+E+GA   N  +  GR  +      G +   + L
Sbjct: 6   GSSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMMM-GSARVAELL 63

Query: 136 LTAARTSPVANTWGFSRFVNIRDESGAT-PLHLAARQGWSECVHTLLDNGALACSSTGGN 194
           L        A         N  D +  T P+H AAR+G+ + +  L   GA        +
Sbjct: 64  LLHG-----AE-------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA---RLDVRD 108

Query: 195 GYPGSTPLHFAARGGSLECIRELLAWGAD 223
            + G  P+  A   G  +  R L A    
Sbjct: 109 AW-GRLPVDLAEELGHRDVARYLRAAAGG 136

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 96.0 bits (240), Expect = 1e-23
 Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 16/135 (11%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
               L  AA  G  + ++ALL A      AN        N  +  G  P+ +    G + 
Sbjct: 12  SADWLATAAARGRVEEVRALLEAG-----AN-------PNAPNSYGRRPIQVMMM-GSAR 58

Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
               LL +GA        +    + P+H AAR G L+ +  L   GA     DA+GR+P 
Sbjct: 59  VAELLLLHGA---EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 115

Query: 236 AIALKYKHQACAALL 250
            +A +  H+  A  L
Sbjct: 116 DLAEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 78.3 bits (194), Expect = 2e-17
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 15/119 (12%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
            + V +  G  ++ E ++   A+P              +H AA  G ++ L +L      
Sbjct: 48  PIQVMM-MGSARVAELLLLHGAEPNC---ADPATLTRPVHDAAREGFLDTLVVLHRA--- 100

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSD 130
               D  + + + P+ +A   G     + L  +          +G       A  G SD
Sbjct: 101 GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAG------GTRGSNHARIDAAEGPSD 153

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  118 bits (296), Expect = 6e-31
 Identities = 51/209 (24%), Positives = 82/209 (39%), Gaps = 20/209 (9%)

Query: 48  SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
              +LA +    E+   +L      +     ++  +T L  A   G    V+ L++ G  
Sbjct: 9   MICNLAYSGKLDELKERILAD---KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167
           + N     G + LH AA  G  + ++ALL                 VN  +++G TPLH 
Sbjct: 66  V-NDKDDAGWSPLHIAASAGXDEIVKALLVKGAH------------VNAVNQNGCTPLHY 112

Query: 168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
           AA +   E    LL+ GA    +     +  +T +H AA  G+L+ +  LL + A     
Sbjct: 113 AASKNRHEIAVMLLEGGA----NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ 168

Query: 228 DAFGRIPYAIALKYKHQACAALLNPSSAE 256
           D  G  P  +A   +    A  L    A 
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGAS 197

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (278), Expect = 3e-28
 Identities = 58/232 (25%), Positives = 89/232 (38%), Gaps = 26/232 (11%)

Query: 13  SALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF 70
               +A      ++ E ++   +  T    T    + +ALH A + G  E++  LL    
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATR---TDQDSR-TALHWACSAGHTEIVEFLLQLG- 63

Query: 71  LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSD 130
                +  +    +PL +AA  G    VK L+  GA + N  +  G T LHYAA     +
Sbjct: 64  --VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHE 120

Query: 131 CLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSS 190
               LL                  + +D   AT +H AA +G  + VH LL   A    S
Sbjct: 121 IAVMLLEGGAN------------PDAKDHYDATAMHRAAAKGNLKMVHILLFYKA----S 164

Query: 191 TGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK 242
           T      G+TPLH A     +E  + L+  GA     +   + P  +A    
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGL 216

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  104 bits (262), Expect = 5e-26
 Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 17/174 (9%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
               +A         ++++   +          RT LH+A   GH++ ++ LL       
Sbjct: 9   MICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLG---- 63

Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
                     VN +D++G +PLH+AA  G  E V  LL  GA            G TPLH
Sbjct: 64  -VP-------VNDKDDAGWSPLHIAASAGXDEIVKALLVKGA----HVNAVNQNGCTPLH 111

Query: 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
           +AA     E    LL  GA+    D +       A    +     +L    A  
Sbjct: 112 YAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST 165

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  100 bits (251), Expect = 1e-24
 Identities = 57/217 (26%), Positives = 86/217 (39%), Gaps = 34/217 (15%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
            +AL  A   G  +++E +++           G +        LH+AA+ G  E++  LL
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWS-------PLHIAASAGXDEIVKALL 93

Query: 67  DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY 126
            +     + +A+N+   TPL  AA   +      L+E GA   +       T +H AA  
Sbjct: 94  VK---GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAK 149

Query: 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
           G+   +  LL    +             NI+D  G TPLHLA  +   E    L+  GA 
Sbjct: 150 GNLKMVHILLFYKAS------------TNIQDTEGNTPLHLACDEERVEEAKFLVTQGA- 196

Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
              S         TPL  A   G L  I + LA G +
Sbjct: 197 ---SIYIENKEEKTPLQVAK--GGLGLILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.9 bits (210), Expect = 5e-19
 Identities = 32/146 (21%), Positives = 45/146 (30%), Gaps = 24/146 (16%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
                + A      +  + +L     +  +            D+   T LH A   G +E
Sbjct: 7   NIMICNLAYSGKLDELKERIL-----ADKSL-------ATRTDQDSRTALHWACSAGHTE 54

Query: 176 CVHTLLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFG 231
            V  LL  G                 G +PLH AA  G  E ++ LL  GA     +  G
Sbjct: 55  IVEFLLQLGV--------PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106

Query: 232 RIPYAIALKYKHQACAALLNPSSAEP 257
             P   A        A +L    A P
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANP 132

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 24/98 (24%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219
           S     +LA      E    +L + +LA + T  +     T LH+A   G  E +  LL 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLA-TRTDQDSR---TALHWACSAGHTEIVEFLLQ 61

Query: 220 WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP 257
            G      D  G  P  IA           L    A  
Sbjct: 62  LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  119 bits (301), Expect = 8e-31
 Identities = 51/242 (21%), Positives = 86/242 (35%), Gaps = 38/242 (15%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
           AL  A  + ++ M++ +VE  A+       G          LH AA+ G +++   L+ Q
Sbjct: 76  ALHQACIDDNVDMVKFLVENGANINQPDNEGWI-------PLHAAASCGYLDIAEYLISQ 128

Query: 69  FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH 128
                +  A+N    TPL +A        ++  +           +              
Sbjct: 129 ---GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG-------VDIEAARKEEERIML 178

Query: 129 SDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALAC 188
            D  Q L      S   N            +SG T LH+AA +G++E +  L+       
Sbjct: 179 RDARQWLN-----SGHIN-------DVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-DV 225

Query: 189 SSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAA 248
           +    +G+   TPLH AA  G  E  R L+    D    +  G+  + +A +        
Sbjct: 226 NIKDYDGW---TPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEE 282

Query: 249 LL 250
           L 
Sbjct: 283 LQ 284

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  109 bits (274), Expect = 5e-27
 Identities = 44/208 (21%), Positives = 69/208 (33%), Gaps = 31/208 (14%)

Query: 46  KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESG 105
           ++    L    G    L   + +      T           + A  +G    V +L+E G
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVVK---RKKTKVKFDD-GAVFLAACSSGDTEEVLRLLERG 63

Query: 106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL 165
           A I N+ ++ G T LH A    + D ++ L+        AN       +N  D  G  PL
Sbjct: 64  ADI-NYANVDGLTALHQACIDDNVDMVKFLV-----ENGAN-------INQPDNEGWIPL 110

Query: 166 HLAARQGWSECVHTLLDNGA--LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
           H AA  G+ +    L+  GA   A +S       G TPL  A      E ++  +     
Sbjct: 111 HAAASCGYLDIAEYLISQGAHVGAVNSE------GDTPLDIAEEEAMEELLQNEVNRQ-- 162

Query: 224 RVQPDAFGRIPYAIALKYKHQACAALLN 251
                           +   +     LN
Sbjct: 163 ----GVDIEAARKEEERIMLRDARQWLN 186

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  108 bits (272), Expect = 1e-26
 Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 33/239 (13%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
              +    G    +E  V       V      +   +    A + G  E +  LL++   
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRKKTKV-----KFDDGAVFLAACSSGDTEEVLRLLER--- 62

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC 131
             + +  N    T L  A ++  +  VK L+E+GA I N    +G   LH AA  G+ D 
Sbjct: 63  GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDI 121

Query: 132 LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSST 191
            + L+     S  A+       V   +  G TPL +A  +   E +   ++         
Sbjct: 122 AEYLI-----SQGAH-------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ------- 162

Query: 192 GGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
              G           R    +  + L +   + V+    G     +A    +     LL
Sbjct: 163 ---GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  102 bits (256), Expect = 1e-24
 Identities = 32/174 (18%), Positives = 57/174 (32%), Gaps = 22/174 (12%)

Query: 79  NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
           +  ++    +    G  + ++  +                    A   G ++ +  LL  
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD--DGAVFLAACSSGDTEEVLRLLER 62

Query: 139 ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL--ACSSTGGNGY 196
                 A+       +N  +  G T LH A      + V  L++NGA      +      
Sbjct: 63  G-----AD-------INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE----- 105

Query: 197 PGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            G  PLH AA  G L+    L++ GA     ++ G  P  IA +   +      
Sbjct: 106 -GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.5 bits (223), Expect = 3e-20
 Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 24/175 (13%)

Query: 12  ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
           ++ L +A E    ++++  V           G   ++A          +    L      
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQ--------GVDIEAARKEEERIMLRDARQWLNSG--- 188

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDC 131
           + N     +   T L VAA  G    +K LI++   + N     G T LH AA++G  + 
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEA 247

Query: 132 LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
            + L+       + +       +   ++ G T   +A                 L
Sbjct: 248 CRILV-----ENLCD-------MEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.7 bits (138), Expect = 4e-09
 Identities = 17/96 (17%), Positives = 24/96 (25%), Gaps = 18/96 (18%)

Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN---GYPGSTPLHFAARGGS 210
           + + D        L    G    +   +                 +        A   G 
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRK--------KTKVKFDDGAVFLAACSSGD 52

Query: 211 LECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
            E +  LL  GAD    +  G       L   HQAC
Sbjct: 53  TEEVLRLLERGADINYANVDGLTA----L---HQAC 81

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  119 bits (299), Expect = 8e-31
 Identities = 42/227 (18%), Positives = 74/227 (32%), Gaps = 40/227 (17%)

Query: 12  ESALFVAVEN---GDLQMIE------AMVEADPTVLG---MTSGYGKQSALHLAAAYGQI 59
           ++ L  A+ N   G    I          ++    +      S Y  Q+ALH+A     +
Sbjct: 55  KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNM 114

Query: 60  EVLSMLLDQ-----------FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
            ++++L++            FF  T       + + PL +AA   +L+ VK L+++    
Sbjct: 115 TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP 174

Query: 109 LNFDS--LQGRTCLHYAAYYGHSDCLQALLTAARTSP----VANTWGFSRFVNIRDESGA 162
            +  +    G T LH       +         +  +      A      +   I +  G 
Sbjct: 175 ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL 234

Query: 163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG 209
           TPL LAA  G    +  +L                     H AA   
Sbjct: 235 TPLALAASSGKIGVLAYILQREI-----------HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  114 bits (288), Expect = 2e-29
 Identities = 51/276 (18%), Positives = 88/276 (31%), Gaps = 64/276 (23%)

Query: 14  ALFVAVENGDLQMIEAMVE---------ADPTVLGMTSGYGKQSALHLAAA---YGQIEV 61
           ++F AV   + Q +E+++           D       +G   ++ L  A      GQ + 
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETG---KTCLLKAMLNLHNGQNDT 72

Query: 62  LSMLLDQ--------FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI----- 108
           +++LLD          F+  +        QT L +A     ++ V  L+E+GA +     
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132

Query: 109 --------LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES 160
                          G   L  AA       ++ LL    +   A+       ++ RD  
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL--QNSWQPAD-------ISARDSV 183

Query: 161 GATPLHLAARQG---------WSECVHTLLDNGALACSSTGGNGYP---GSTPLHFAARG 208
           G T LH                +   + +L  GA    +          G TPL  AA  
Sbjct: 184 GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243

Query: 209 GSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ 244
           G +  +  +L       Q +         A  + H 
Sbjct: 244 GKIGVLAYIL-------QREIHEPECRHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  111 bits (278), Expect = 7e-28
 Identities = 39/197 (19%), Positives = 58/197 (29%), Gaps = 32/197 (16%)

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVKKLIES-------GAFILNFDSLQGRTCLHYA--- 123
                  Y +  +  A        ++ L+                D   G+TCL  A   
Sbjct: 5   GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64

Query: 124 AYYGHSDCLQALLTAARTSPVANTWGFSRFVNI----RDESGATPLHLAARQGWSECVHT 179
            + G +D +  LL  A       T    +FVN         G T LH+A  +     V  
Sbjct: 65  LHNGQNDTIALLLDVA-----RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTL 119

Query: 180 LLDNGA----------LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDA 229
           L++NGA             +      Y G  PL  AA    L  ++ LL          A
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA 179

Query: 230 ---FGRIPYAIALKYKH 243
               G       ++   
Sbjct: 180 RDSVGNTVLHALVEVAD 196

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  105 bits (264), Expect = 5e-26
 Identities = 41/244 (16%), Positives = 71/244 (29%), Gaps = 45/244 (18%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLY-----TNTDALNR-YKQTPLMVAAMN---GKLSC 97
           + ++  A A    + L  LL  F        T+++  +    +T L+ A +N   G+   
Sbjct: 14  RRSIFDAVAQSNCQELESLL-PFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 98  VKKLIESGAFILNFDSL----------QGRTCLHYAAYYGHSDCLQALLTA-----ARTS 142
           +  L++      +              +G+T LH A    +   +  L+       A  +
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202
                +            G  PL LAA       V  LL N       +  +   G+T L
Sbjct: 133 ---GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV-GNTVL 188

Query: 203 HFAARGGS----------------LECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
           H                       L    +L          +  G  P A+A        
Sbjct: 189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248

Query: 247 AALL 250
            A +
Sbjct: 249 LAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 36/140 (25%)

Query: 12  ESALFVAVENGDLQMIEAMVE-----ADPTV---LGMTSGYGKQSALHLAAAYGQIEVLS 63
           E  L +A     L +++ +++     AD +    +G T        LH         V +
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT-------VLHALVEVADNTVDN 201

Query: 64  MLL-------------DQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILN 110
                                    +  NR   TPL +AA +GK+  +  +++       
Sbjct: 202 TKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI---- 257

Query: 111 FDSLQGRTCLHYAAYYGHSD 130
                   C H AA++ H  
Sbjct: 258 ----HEPECRHAAAHHHHHH 273

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  115 bits (290), Expect = 9e-31
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 21/170 (12%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
            L  AAA G ++ +  LL +     + DALNR+ +T L V    G  +   +L++ GA  
Sbjct: 5   RLSGAAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP 61

Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
            N     G + +H AA  G  D L+ L+        A+       VN+ D +GA P+HLA
Sbjct: 62  -NVQDTSGTSPVHDAARTGFLDTLKVLVEHG-----AD-------VNVPDGTGALPIHLA 108

Query: 169 ARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
            ++G +  V + L   +        +   G TPL  A + G+ + +  L 
Sbjct: 109 VQEGHTAVV-SFLAAES---DLHRRDAR-GLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  107 bits (269), Expect = 9e-28
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 20/168 (11%)

Query: 84  TPLMVAAMNGKLSCVKKLIES-GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
             L  AA  G +  V++L+        +  +  G+T L    + G +     LL      
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQVMMF-GSTAIALELLKQG--- 58

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202
             A+        N++D SG +P+H AAR G+ + +  L+++GA        +G  G+ P+
Sbjct: 59  --AS-------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA---DVNVPDGT-GALPI 105

Query: 203 HFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           H A + G    +   LA  +D  + DA G  P  +AL+   Q    +L
Sbjct: 106 HLAVQEGHTAVV-SFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  102 bits (256), Expect = 6e-26
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 19/173 (10%)

Query: 10  RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
           R+   L  A   GD+Q +  ++  +       + +GK +AL     +G   +   LL Q 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGK-TALQ-VMMFGSTAIALELLKQ- 57

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
               + +  +    +P+  AA  G L  +K L+E GA + N     G   +H A   GH+
Sbjct: 58  --GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHT 114

Query: 130 DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLD 182
             +  L   +              ++ RD  G TPL LA ++G  + V  L  
Sbjct: 115 AVVSFLAAESD-------------LHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 22/94 (23%), Positives = 27/94 (28%), Gaps = 12/94 (12%)

Query: 161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRE 216
               L  AA +G  + V  LL            +       G T L      GS     E
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLH-------RELVHPDALNRFGKTALQVMMF-GSTAIALE 53

Query: 217 LLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           LL  GA     D  G  P   A +        +L
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 87

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  114 bits (288), Expect = 3e-30
 Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 20/170 (11%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
            L  AA  G+ + + +L+       + +A +    TPL +AA NG L  V+ L+++GA +
Sbjct: 17  KLLEAARAGRDDEVRILMAN---GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73

Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
            N     G T L  AA +GH + ++ LL        A+       VN  D  G TPLHLA
Sbjct: 74  -NAVDHAGMTPLRLAALFGHLEIVEVLL-----KNGAD-------VNANDMEGHTPLHLA 120

Query: 169 ARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
           A  G  E V  LL NGA        + + G T    +   G+ +    L 
Sbjct: 121 AMFGHLEIVEVLLKNGA---DVNAQDKF-GKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  110 bits (277), Expect = 1e-28
 Identities = 59/172 (34%), Positives = 81/172 (47%), Gaps = 25/172 (14%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
              L+ AA  G+   V+ L+ +GA + N +   G T LH AA+ GH + ++ LL      
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNG--- 70

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN----GYPG 198
             A+       VN  D +G TPL LAA  G  E V  LL NGA        +       G
Sbjct: 71  --AD-------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA--------DVNANDMEG 113

Query: 199 STPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            TPLH AA  G LE +  LL  GAD    D FG+  + I++   ++  A +L
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  100 bits (253), Expect = 2e-25
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 14  ALFVAVENGDLQMIE------AMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLD 67
            L  A   G    +       A V A           G  + LHLAA  G +E++ +LL 
Sbjct: 17  KLLEAARAGRDDEVRILMANGADVNA-------EDASGW-TPLHLAAFNGHLEIVEVLLK 68

Query: 68  QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127
                 + +A++    TPL +AA+ G L  V+ L+++GA + N + ++G T LH AA +G
Sbjct: 69  N---GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFG 124

Query: 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLL 181
           H + ++ LL        A+       VN +D+ G T   ++   G  +    L 
Sbjct: 125 HLEIVEVLLKNG-----AD-------VNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 84.0 bits (209), Expect = 3e-19
 Identities = 48/150 (32%), Positives = 60/150 (40%), Gaps = 24/150 (16%)

Query: 105 GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164
           G+   +         L  AA  G  D ++ L+        A+       VN  D SG TP
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANG-----AD-------VNAEDASGWTP 50

Query: 165 LHLAARQGWSECVHTLLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRELLAW 220
           LHLAA  G  E V  LL NGA        +     + G TPL  AA  G LE +  LL  
Sbjct: 51  LHLAAFNGHLEIVEVLLKNGA--------DVNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102

Query: 221 GADRVQPDAFGRIPYAIALKYKHQACAALL 250
           GAD    D  G  P  +A  + H     +L
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 52.0 bits (126), Expect = 3e-08
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 15/95 (15%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
            L +A   G L+++E +++  AD     + G T        LHLAA +G +E++ +LL  
Sbjct: 83  PLRLAALFGHLEIVEVLLKNGADVNANDMEGHT-------PLHLAAMFGHLEIVEVLLKN 135

Query: 69  FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE 103
                + +A +++ +T   ++  NG     + L +
Sbjct: 136 ---GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  114 bits (288), Expect = 2e-29
 Identities = 47/238 (19%), Positives = 73/238 (30%), Gaps = 34/238 (14%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQ-----TPLMVAAMN---GKLSCV 98
           +  L    + G  E L+ LL+     +     + Y +     T LM A +N   G  +C+
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 99  KKLIESGAFILNFDSL----------QGRTCLHYAAYYGHSDCLQALLTA-ARTSPVANT 147
             L++      N   L          QG + LH A       C++ L+   A     A  
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 148 WGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNG---------------ALACSSTG 192
             F +        G  PL LAA     + V  LL+N                 L      
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI 182

Query: 193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            +  P ++ L      G L+    L          +  G  P  +A K         +
Sbjct: 183 ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  101 bits (252), Expect = 2e-24
 Identities = 37/187 (19%), Positives = 57/187 (30%), Gaps = 27/187 (14%)

Query: 81  YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSL---------QGRTCLHYAA---YYGH 128
           + +  L      G    +  L+E      N   L          G+TCL  A      G 
Sbjct: 1   FDRDRLFSVVSRGVPEELTGLLEY--LRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGV 58

Query: 129 SDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA--- 185
           + C+  LL   + S        ++        G + LH+A  +   +CV  L++NGA   
Sbjct: 59  NACIMPLLQIDKDSGNPKPLVNAQ-CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH 117

Query: 186 ------LACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDA---FGRIPYA 236
                       G   Y G  PL  AA     + +  LL         +A    G     
Sbjct: 118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 177

Query: 237 IALKYKH 243
             +    
Sbjct: 178 ALVMIAD 184

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 96.0 bits (239), Expect = 9e-23
 Identities = 42/186 (22%), Positives = 61/186 (32%), Gaps = 43/186 (23%)

Query: 12  ESALFVAVENGDLQMIEAMVE--AD----------PTVLGMTSGYGKQSALHLAAAYGQI 59
            SAL +A+E   LQ ++ +VE  AD              G    +G +  L LAA   Q 
Sbjct: 91  HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFG-ELPLSLAACTKQW 149

Query: 60  EVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTC 119
           +V++ LL+      + +A +    T L    M    S                     + 
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS------------------PENSA 191

Query: 120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHT 179
           L    Y G       L        V           I +  G TPL LAA++G  E    
Sbjct: 192 LVIHMYDGLLQMGARLC-----PTVQL-------EEISNHQGLTPLKLAAKEGKIEIFRH 239

Query: 180 LLDNGA 185
           +L    
Sbjct: 240 ILQREF 245

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  110 bits (277), Expect = 8e-29
 Identities = 50/176 (28%), Positives = 69/176 (39%), Gaps = 20/176 (11%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
              L  AA  G +E +  L        N   +   + TPL  AA   ++S V+ L++ GA
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 66

Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH 166
            + +     G   LH A  YGH +  + L+        A        VN+ D    TPLH
Sbjct: 67  DV-HAKDKGGLVPLHNACSYGHYEVAELLV-----KHGAV-------VNVADLWKFTPLH 113

Query: 167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
            AA +G  E    LL +GA     T  N   G+TPL      G  +    L    A
Sbjct: 114 EAAAKGKYEICKLLLQHGA---DPTKKNRD-GNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  102 bits (257), Expect = 5e-26
 Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 18/178 (10%)

Query: 9   ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
             ++  L  A + GD++ ++ +            G    + LH AA Y ++ V+  LL  
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQH 64

Query: 69  FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH 128
                +  A ++    PL  A   G     + L++ GA + N   L   T LH AA  G 
Sbjct: 65  ---GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGK 120

Query: 129 SDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
            +  + LL        A+          ++  G TPL L    G ++    L  + AL
Sbjct: 121 YEICKLLL-----QHGAD-------PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAAL 165

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  101 bits (255), Expect = 1e-25
 Identities = 48/176 (27%), Positives = 65/176 (36%), Gaps = 25/176 (14%)

Query: 79  NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
           N      L+ AA  G +  VKKL    +        +  T LH+AA Y     ++ LL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 139 ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN---- 194
                 A+       V+ +D+ G  PLH A   G  E    L+ +GA             
Sbjct: 65  G-----AD-------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGA--------VVNVA 104

Query: 195 GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
                TPLH AA  G  E  + LL  GAD  + +  G  P  +  K        LL
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLL 159

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  108 bits (272), Expect = 3e-28
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 26/172 (15%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
              L+ AA  G+   V+ L+ +GA     D L G + LH AA YGH    + LL A    
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPF-TTDWL-GTSPLHLAAQYGHFSTTEVLLRAG--- 57

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN----GYPG 198
              +        + R +   TPLH+AA +G +  V  LL +GA        +        
Sbjct: 58  --VS-------RDARTKVDRTPLHMAASEGHANIVEVLLKHGA--------DVNAKDMLK 100

Query: 199 STPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            T LH+A      E +  L+ +GAD      F +  + I++   ++  A +L
Sbjct: 101 MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  107 bits (271), Expect = 4e-28
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 28/173 (16%)

Query: 49  ALHLAAAYGQIEVLSMLLDQ---FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESG 105
            L  AA  GQ + + +L+     F     TD       +PL +AA  G  S  + L+ +G
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPF----TTD---WLGTSPLHLAAQYGHFSTTEVLLRAG 57

Query: 106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL 165
               +  +   RT LH AA  GH++ ++ LL        A+       VN +D    T L
Sbjct: 58  VSR-DARTKVDRTPLHMAASEGHANIVEVLL-----KHGAD-------VNAKDMLKMTAL 104

Query: 166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
           H A      E V  L+  GA        + +   T    +   G+ + + E+L
Sbjct: 105 HWATEHNHQEVVELLIKYGA---DVHTQSKF-CKTAFDISIDNGNED-LAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 97.8 bits (245), Expect = 2e-24
 Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 31/173 (17%)

Query: 14  ALFVAVENGDLQMIE------AMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLD 67
            L  A   G    +       A    D          G  S LHLAA YG      +LL 
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTD--------WLGT-SPLHLAAQYGHFSTTEVLLR 55

Query: 68  QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127
                 + DA  +  +TPL +AA  G  + V+ L++ GA + N   +   T LH+A  + 
Sbjct: 56  A---GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHN 111

Query: 128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
           H + ++ L+        A+       V+ + +   T   ++   G  +    L
Sbjct: 112 HQEVVELLI-----KYGAD-------VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.7 bits (185), Expect = 3e-16
 Identities = 37/136 (27%), Positives = 47/136 (34%), Gaps = 19/136 (13%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNI-RDESGATPLHLAARQGWS 174
               L  AA  G  D ++ L+              +       D  G +PLHLAA+ G  
Sbjct: 2   LGKKLLEAARAGQDDEVRILM--------------ANGAPFTTDWLGTSPLHLAAQYGHF 47

Query: 175 ECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234
                LL  G    + T        TPLH AA  G    +  LL  GAD    D      
Sbjct: 48  STTEVLLRAGVSRDARTKV----DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA 103

Query: 235 YAIALKYKHQACAALL 250
              A ++ HQ    LL
Sbjct: 104 LHWATEHNHQEVVELL 119

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  107 bits (270), Expect = 3e-28
 Identities = 57/137 (41%), Positives = 78/137 (56%), Gaps = 16/137 (11%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
            LHLAA  G +EV+ +LL+      + +A ++  +TPL +AA NG L  VK L+E+GA +
Sbjct: 5   PLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
            N     GRT LH AA  GH + ++ LL        A+       VN +D++G TPLHLA
Sbjct: 62  -NAKDKNGRTPLHLAARNGHLEVVKLLL-----EAGAD-------VNAKDKNGRTPLHLA 108

Query: 169 ARQGWSECVHTLLDNGA 185
           AR G  E V  LL+ GA
Sbjct: 109 ARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  105 bits (264), Expect = 2e-27
 Identities = 62/140 (44%), Positives = 78/140 (55%), Gaps = 17/140 (12%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
           +TPL +AA NG L  VK L+E+GA + N     GRT LH AA  GH + ++ LL A    
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG--- 58

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL 202
             A+       VN +D++G TPLHLAAR G  E V  LL+ GA        +   G TPL
Sbjct: 59  --AD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKN-GRTPL 105

Query: 203 HFAARGGSLECIRELLAWGA 222
           H AAR G LE ++ LL  GA
Sbjct: 106 HLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 86.6 bits (216), Expect = 1e-20
 Identities = 57/137 (41%), Positives = 69/137 (50%), Gaps = 20/137 (14%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
           GRT LH AA  GH + ++ LL A      A+       VN +D++G TPLHLAAR G  E
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAG-----AD-------VNAKDKNGRTPLHLAARNGHLE 49

Query: 176 CVHTLLDNGAL--ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRI 233
            V  LL+ GA   A    G       TPLH AAR G LE ++ LL  GAD    D  GR 
Sbjct: 50  VVKLLLEAGADVNAKDKNG------RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103

Query: 234 PYAIALKYKHQACAALL 250
           P  +A +  H     LL
Sbjct: 104 PLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 63.9 bits (157), Expect = 1e-12
 Identities = 40/91 (43%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219
           +G TPLHLAAR G  E V  LL+ GA        +   G TPLH AAR G LE ++ LL 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKN-GRTPLHLAARNGHLEVVKLLLE 56

Query: 220 WGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            GAD    D  GR P  +A +  H     LL
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 59.3 bits (145), Expect = 4e-11
 Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 15/99 (15%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
            L +A  NG L++++ ++E  AD       G T        LHLAA  G +EV+ +LL+ 
Sbjct: 38  PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT-------PLHLAARNGHLEVVKLLLEA 90

Query: 69  FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
                + +A ++  +TPL +AA NG L  VK L+E+GA+
Sbjct: 91  ---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  106 bits (268), Expect = 6e-28
 Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 17/136 (12%)

Query: 77  ALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALL 136
            L        M A  NG L  VK  +  G  + N     GR  LHYAA  G  + L+ LL
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 137 TAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGY 196
                   A+       +N  D+   TPL  A  +G   CV  LL  GA     T     
Sbjct: 61  LKG-----AD-------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGA---DKTVKGPD 105

Query: 197 PGSTPLHFAARGGSLE 212
            G T            
Sbjct: 106 -GLTAFEATDNQAIKA 120

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 93.2 bits (233), Expect = 4e-23
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 16/129 (12%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
               A   G ++ +   + +     + +      + PL  AA  G+L  ++ L+  GA I
Sbjct: 10  EFMWALKNGDLDEVKDYVAK---GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 66

Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
            N       T L  A Y GH  C++ LL     S  A+         ++   G T     
Sbjct: 67  -NAPDKHHITPLLSAVYEGHVSCVKLLL-----SKGAD-------KTVKGPDGLTAFEAT 113

Query: 169 ARQGWSECV 177
             Q     +
Sbjct: 114 DNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 86.7 bits (216), Expect = 9e-21
 Identities = 31/130 (23%), Positives = 43/130 (33%), Gaps = 20/130 (15%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
                 +A   G  D ++  +         +       VN   E G  PLH AA  G  E
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKG-----ED-------VNRTLEGGRKPLHYAADCGQLE 54

Query: 176 CVHTLLDNGAL--ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRI 233
            +  LL  GA   A            TPL  A   G + C++ LL+ GAD+      G  
Sbjct: 55  ILEFLLLKGADINAPDKHH------ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108

Query: 234 PYAIALKYKH 243
            +        
Sbjct: 109 AFEATDNQAI 118

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 86.3 bits (215), Expect = 1e-20
 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 10/124 (8%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
           +     A++NGDL  ++  V    D      T   G +  LH AA  GQ+E+L  LL + 
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNR---TLEGG-RKPLHYAADCGQLEILEFLLLKG 63

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
               + +A +++  TPL+ A   G +SCVK L+  GA         G T           
Sbjct: 64  ---ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQAIK 119

Query: 130 DCLQ 133
             LQ
Sbjct: 120 ALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW 220
                  A + G  + V   +  G             G  PLH+AA  G LE +  LL  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGE---DVNRTLEG-GRKPLHYAADCGQLEILEFLLLK 62

Query: 221 GADRVQPDAFGRIPYAIALKYKHQACAALL 250
           GAD   PD     P   A+   H +C  LL
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVSCVKLL 92

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  106 bits (267), Expect = 3e-27
 Identities = 26/194 (13%), Positives = 51/194 (26%), Gaps = 36/194 (18%)

Query: 46  KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN----GKLSCVKKL 101
           +   +  AA  G  E    L ++       D  +  K   L     N     +      L
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 102 IESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF-------V 154
           I  GA I    + +G T        G +D             +  T    +        +
Sbjct: 62  INKGADI-KSRTKEGTTLFFPLFQGGGND-------------ITGTTELCKIFLEKGADI 107

Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTG-----GNGYPGSTPLHFAARGG 209
               +     +       + +    +     +  S +G      + + G T L F  R  
Sbjct: 108 TALYKPYKIVVFKNIFNYFVDENEMIPLYKLI-FSQSGLQLLIKDKW-GLTALEFVKRCQ 165

Query: 210 SLECIRELLAWGAD 223
               ++ +  +   
Sbjct: 166 KPIALKMMEDYIKK 179

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  103 bits (260), Expect = 3e-26
 Identities = 23/185 (12%), Positives = 47/185 (25%), Gaps = 26/185 (14%)

Query: 13  SALFVAVENGDLQMIEAMVE--ADPTV--LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
             +  A   G  +    + E   +     L     Y     L       + ++   L+++
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILY---DVLRNNNDEARYKISMFLINK 64

Query: 69  FFLYTNTDALNRYKQTPLMVAAMNGKLS------CVKKLIESGAFILNFDSLQGRTCLHY 122
                +  +  +   T        G           K  +E GA I        +  +  
Sbjct: 65  ---GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFK 120

Query: 123 AAYYGHSDC--LQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
             +    D   +  L     +            + I+D+ G T L    R      +  +
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQ-------LLIKDKWGLTALEFVKRCQKPIALKMM 173

Query: 181 LDNGA 185
            D   
Sbjct: 174 EDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 90.9 bits (226), Expect = 2e-21
 Identities = 25/195 (12%), Positives = 49/195 (25%), Gaps = 41/195 (21%)

Query: 75  TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD--SLQGRTCLHYAAYYGHSDCL 132
           ++A++ Y    +  AAM G      +L E G         S      L            
Sbjct: 1   SNAMSEY--RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKIS 58

Query: 133 QALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHT------LLDNGAL 186
             L+        A+       +  R + G T      + G ++   T       L+ GA 
Sbjct: 59  MFLINKG-----AD-------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA- 105

Query: 187 ACSSTGGN----GYPGSTPLHFAARGGSLECIRE-------LLAWGADRVQPDAFGRIPY 235
                  +      P    +        ++               G   +  D +G    
Sbjct: 106 -------DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158

Query: 236 AIALKYKHQACAALL 250
               + +      ++
Sbjct: 159 EFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 25/166 (15%)

Query: 112 DSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ 171
           +++     +  AA  G  +    L                +   ++       L     +
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKG-----YE----DKESVLKSNILYDVLRNNNDE 52

Query: 172 GWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG------SLECIRELLAWGADRV 225
              +    L++ GA   S T      G+T      +GG      + E  +  L  GAD  
Sbjct: 53  ARYKISMFLINKGADIKSRTKE----GTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108

Query: 226 QPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLN 271
                 +I     +         ++      PL   +  ++   L 
Sbjct: 109 ALYKPYKIVVFKNIFNYFVDENEMI------PLYKLIFSQSGLQLL 148

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  104 bits (261), Expect = 8e-27
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 18/145 (12%)

Query: 79  NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
           N   +T L +A++ G +  V+ L+++G+   N     G T LH A  +GH   ++ LL  
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 139 ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPG 198
                 A        VN       +PLH AA+ G  + V  LL  GA   S    N + G
Sbjct: 66  K-----AL-------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA---SRNAVNIF-G 109

Query: 199 STPLHFAARGGSLECIRELLAWGAD 223
             P+ +         +  L      
Sbjct: 110 LRPVDYTDDESMKS-LLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 97.5 bits (244), Expect = 2e-24
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
            LH+A+  G I  +  LL      ++ +  +    TPL  A  +G L  V+ L++  A +
Sbjct: 13  LLHIASIKGDIPSVEYLLQN---GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69

Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA 168
            N    Q  + LH AA  GH D ++ LL     S  A+        N  +  G  P+   
Sbjct: 70  -NTTGYQNDSPLHDAAKNGHVDIVKLLL-----SYGAS-------RNAVNIFGLRPVDYT 116

Query: 169 ARQGWSECVHTLLDNGA 185
             +     +     N +
Sbjct: 117 DDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 97.1 bits (243), Expect = 2e-24
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 16/135 (11%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
           G T LH A+  G    ++ LL        ++        N++D +G TPLH A   G  +
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNG-----SD-------PNVKDHAGWTPLHEACNHGHLK 57

Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
            V  LL + AL  ++    GY   +PLH AA+ G ++ ++ LL++GA R   + FG  P 
Sbjct: 58  VVELLLQHKALVNTT----GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113

Query: 236 AIALKYKHQACAALL 250
                   ++   L 
Sbjct: 114 DYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 64.0 bits (157), Expect = 1e-12
 Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 157 RDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRE 216
            +  G T LH+A+ +G    V  LL NG+          + G TPLH A   G L+ +  
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD----HAGWTPLHEACNHGHLKVVEL 61

Query: 217 LLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           LL   A           P   A K  H     LL
Sbjct: 62  LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  106 bits (266), Expect = 1e-26
 Identities = 40/214 (18%), Positives = 66/214 (30%), Gaps = 35/214 (16%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADP---TVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
            L  A   G+L++++  V+   DP      G+T       ALH A       ++  L+  
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPSQPNEEGIT-------ALHNAICGANYSIVDFLITA 76

Query: 69  FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY-- 126
                N ++ + +  TPL  AA          L++ GA I       G T       Y  
Sbjct: 77  ---GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYRE 133

Query: 127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
           G++DC   L          +       + + +      L   + +   E        G  
Sbjct: 134 GYADCATYLA-----DVEQS-------MGLMNSGAVYALWDYSAEFGDEL---SFREGES 178

Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLECI-RELLA 219
                     P  T   +AA  G    + R    
Sbjct: 179 VTVLRRDG--PEETDWWWAALHGQEGYVPRNYFG 210

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  103 bits (259), Expect = 1e-25
 Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 25/173 (14%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
             L+ AA+ G+L  V++ ++      +  + +G T LH A    +   +  L+TA     
Sbjct: 23  VLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAG---- 77

Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
            AN       VN  D  G TPLH AA    +     L+ +GA   +        G+T   
Sbjct: 78  -AN-------VNSPDSHGWTPLHCAASCNDTVICMALVQHGA---AIFATTLSDGATAFE 126

Query: 204 FAA--RGGSLECIRELLAWGADRVQPDAFGRIP-------YAIALKYKHQACA 247
                R G  +C   L          ++            +   L ++     
Sbjct: 127 KCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESV 179

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 91.6 bits (228), Expect = 2e-21
 Identities = 32/160 (20%), Positives = 49/160 (30%), Gaps = 25/160 (15%)

Query: 98  VKKLIESGAFI--LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVN 155
           ++ ++             L     L  AA  G  + +Q  +       + +        +
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV-----KEMND-------PS 48

Query: 156 IRDESGATPLHLAARQGWSECVHTLLDNGAL--ACSSTGGNGYPGSTPLHFAARGGSLEC 213
             +E G T LH A        V  L+  GA   +  S G       TPLH AA       
Sbjct: 49  QPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG------WTPLHCAASCNDTVI 102

Query: 214 IRELLAWGADRVQPDA-FGRIPYAIALKYK--HQACAALL 250
              L+  GA         G   +     Y+  +  CA  L
Sbjct: 103 CMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL 142

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  100 bits (251), Expect = 6e-24
 Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 8/196 (4%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG---KLSCVKKLIE 103
            + LH   +   +E++  L+      +N    +   ++ L+ A  +         + L++
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHG---SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 104 SGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT 163
                L  +    RT LH+           A         +               +   
Sbjct: 189 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 248

Query: 164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
                      + +   LD   +  +        G T L+ AAR G++  +  LL +GAD
Sbjct: 249 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 308

Query: 224 RVQPDAFGRIP--YAI 237
               +  G  P  +  
Sbjct: 309 PFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 95.1 bits (236), Expect = 8e-22
 Identities = 39/212 (18%), Positives = 72/212 (33%), Gaps = 36/212 (16%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYG---QIEVLSMLL 66
            + L       +L++++ +V+  ++          G +S L  A              LL
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLY---GDNMG-ESCLVKAVKSVNNYDSGTFEALL 187

Query: 67  DQFFLYTNTDALNRYKQTPL----MVAAMNGKLSCVK--------KLIESGAFILNFDSL 114
           D  +LY      +   +T L    + + M G  +  K         +++     +   + 
Sbjct: 188 D--YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245

Query: 115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS 174
           +  +  +          L+ L               +  +N +D +G T L++AAR G  
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWI---------IANMLNAQDSNGDTCLNIAARLGNI 296

Query: 175 ECVHTLLDNGALACSSTGGNGYPGSTPLHFAA 206
             V  LLD GA        N   G  P+ F A
Sbjct: 297 SIVDALLDYGA---DPFIANKS-GLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 80.8 bits (199), Expect = 6e-17
 Identities = 40/223 (17%), Positives = 62/223 (27%), Gaps = 31/223 (13%)

Query: 44  YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA-LNRYKQTPLMVAAMNGKLSCVKKLI 102
              Q   H++      EV     +      N +  ++ +  TPL        L  VK L+
Sbjct: 95  SSNQQQQHVSFDSLLQEVNDAFPNTQL---NLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 103 ESGAFILNFDSLQGRTCLHYAAYYGHS---DCLQALLTAARTSPVANTWGFSRFVNIRDE 159
           + G+  L  D+  G +CL  A    ++      +ALL                 + + D 
Sbjct: 152 KHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPC-----------LILEDS 199

Query: 160 SGATPLHLAARQ----GWSECVHTLLDNGALACSSTGGN----GYPGSTPLHFAARGGSL 211
              T LH         G S      LD                G            G   
Sbjct: 200 MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK 259

Query: 212 ECIRELLAWGADRVQ----PDAFGRIPYAIALKYKHQACAALL 250
           + I E L             D+ G     IA +  + +    L
Sbjct: 260 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 61.2 bits (148), Expect = 2e-10
 Identities = 32/235 (13%), Positives = 59/235 (25%), Gaps = 33/235 (14%)

Query: 79  NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
               +  L              L    +   N +         + ++      +      
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNR-NSEGGSSNQQQQHVSFDSLLQEVNDAFP- 117

Query: 139 ARTSPVANTWGFSRFVNI-RDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP 197
              +   N       +NI  DE G TPLH        E V  L+ +G+   +   G+   
Sbjct: 118 ---NTQLN-------LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS---NRLYGDNM- 163

Query: 198 GSTPLHFAARGG---SLECIRELLAWGADRV-QPDAFGRIP--YAI----------ALKY 241
           G + L  A +            LL +    +   D+  R    + I          A KY
Sbjct: 164 GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKY 223

Query: 242 KHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNE 296
                   +      P+      +     +   +           +     +LN 
Sbjct: 224 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 93.2 bits (233), Expect = 3e-23
 Identities = 43/129 (33%), Positives = 57/129 (44%), Gaps = 25/129 (19%)

Query: 79  NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
           ++   TPL  AA NG    VKKL+  GA + N  S  G T LH AA  GH++ ++ LL  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLL-- 62

Query: 139 ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN---- 194
              +  A+       VN R + G TP HLA + G  E V  L   GA        +    
Sbjct: 63  ---AKGAD-------VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA--------DVNAR 104

Query: 195 GYPGSTPLH 203
            +  S   H
Sbjct: 105 SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 86.3 bits (215), Expect = 8e-21
 Identities = 43/119 (36%), Positives = 58/119 (48%), Gaps = 19/119 (15%)

Query: 105 GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164
           G    + D   G T LH AA  GH++ ++ LL+       A+       VN R + G TP
Sbjct: 1   GHMWGSKD---GNTPLHNAAKNGHAEEVKKLLSKG-----AD-------VNARSKDGNTP 45

Query: 165 LHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
           LHLAA+ G +E V  LL  GA        +   G+TP H A + G  E ++ L A GAD
Sbjct: 46  LHLAAKNGHAEIVKLLLAKGA---DVNARSKD-GNTPEHLAKKNGHHEIVKLLDAKGAD 100

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 69.3 bits (171), Expect = 8e-15
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 10/111 (9%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
            L  A +NG  + ++ ++   AD       S  G  + LHLAA  G  E++ +LL +   
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNA---RSKDGN-TPLHLAAKNGHAEIVKLLLAK--- 64

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHY 122
             + +A ++   TP  +A  NG    VK L   GA + N  S       H+
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 64.3 bits (158), Expect = 6e-13
 Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 4/96 (4%)

Query: 155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
               + G TPLH AA+ G +E V  LL  GA   + +      G+TPLH AA+ G  E +
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD----GNTPLHLAAKNGHAEIV 58

Query: 215 RELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           + LLA GAD       G  P  +A K  H     LL
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 92.1 bits (230), Expect = 2e-22
 Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 25/139 (17%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
             L+ AA  G+   V+ L+ +GA + N     G T L+ A  +GH + ++ LL       
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNG---- 70

Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN----GYPGS 199
            A+       VN  D  G TPLHLAA  G  E    LL +GA        +       G 
Sbjct: 71  -AD-------VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA--------DVNAQDKFGK 114

Query: 200 TPLHFAARGGSLECIRELL 218
           T    +   G+ +    L 
Sbjct: 115 TAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 82.4 bits (205), Expect = 4e-19
 Identities = 47/150 (31%), Positives = 63/150 (42%), Gaps = 24/150 (16%)

Query: 105 GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP 164
           G+   +         L  AA  G  D ++ L+        A+       VN +DE G TP
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANG-----AD-------VNAKDEYGLTP 50

Query: 165 LHLAARQGWSECVHTLLDNGALACSSTGGN----GYPGSTPLHFAARGGSLECIRELLAW 220
           L+LA   G  E V  LL NGA        +       G TPLH AA  G LE    LL  
Sbjct: 51  LYLATAHGHLEIVEVLLKNGA--------DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102

Query: 221 GADRVQPDAFGRIPYAIALKYKHQACAALL 250
           GAD    D FG+  + I++   ++  A +L
Sbjct: 103 GADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 71.3 bits (176), Expect = 3e-15
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 18/129 (13%)

Query: 14  ALFVAVENGDLQMIE------AMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLD 67
            L  A   G    +       A V A          YG  + L+LA A+G +E++ +LL 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNA-------KDEYGL-TPLYLATAHGHLEIVEVLLK 68

Query: 68  QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG 127
                 + +A++    TPL +AA  G L   + L++ GA + N     G+T    +   G
Sbjct: 69  N---GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNG 124

Query: 128 HSDCLQALL 136
           + D  + L 
Sbjct: 125 NEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 12  ESALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
            + L++A  +G L+++E +++  AD          G  + LHLAA  G +E+  +LL   
Sbjct: 48  LTPLYLATAHGHLEIVEVLLKNGADVNA---VDAIGF-TPLHLAAFIGHLEIAEVLLKH- 102

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE 103
               + +A +++ +T   ++  NG     + L +
Sbjct: 103 --GADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 87.4 bits (218), Expect = 2e-21
 Identities = 47/103 (45%), Positives = 60/103 (58%), Gaps = 13/103 (12%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
           +TPL +AA NG L  VK L+E+GA + N     GRT LH AA  GH + ++ LL A    
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAG--- 58

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
             A+       VN +D++G TPLHLAAR G  E V  LL+ GA
Sbjct: 59  --AD-------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 83.9 bits (209), Expect = 4e-20
 Identities = 47/107 (43%), Positives = 58/107 (54%), Gaps = 16/107 (14%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
           GRT LH AA  GH + ++ LL A      A+       VN +D++G TPLHLAAR G  E
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAG-----AD-------VNAKDKNGRTPLHLAARNGHLE 49

Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
            V  LL+ GA        +   G TPLH AAR G LE ++ LL  GA
Sbjct: 50  VVKLLLEAGA---DVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 62.0 bits (152), Expect = 2e-12
 Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 9/96 (9%)

Query: 14  ALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
            L +A  NG L++++ ++E  AD          G ++ LHLAA  G +EV+ +LL+    
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNA---KDKNG-RTPLHLAARNGHLEVVKLLLEA--- 57

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
             + +A ++  +TPL +AA NG L  VK L+E+GA+
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 61.2 bits (150), Expect = 3e-12
 Identities = 40/91 (43%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219
           +G TPLHLAAR G  E V  LL+ GA        +   G TPLH AAR G LE ++ LL 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGA---DVNAKDKN-GRTPLHLAARNGHLEVVKLLLE 56

Query: 220 WGADRVQPDAFGRIPYAIALKYKHQACAALL 250
            GAD    D  GR P  +A +  H     LL
Sbjct: 57  AGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 93.9 bits (233), Expect = 3e-21
 Identities = 36/222 (16%), Positives = 65/222 (29%), Gaps = 12/222 (5%)

Query: 12  ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
             A  +A ENG L ++  + E  PT +          A  LAA  G + VL+ L +    
Sbjct: 129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 188

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG---H 128
                            A   G  + +  L++    +L +  +                H
Sbjct: 189 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-MLAYAEIHEFEYGEKYVNPFIARH 247

Query: 129 SDCLQALLTAARTSPVANTWGFSRFVN-IRDESGATPLHLAARQGWSECVHTLLDNGALA 187
            + L+ +  A +    +N  G    V       G   L    R+     +  +    ++ 
Sbjct: 248 VNRLKEMHDAFKL---SNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304

Query: 188 CSSTGGN----GYPGSTPLHFAARGGSLECIRELLAWGADRV 225
                          +  L  A R G+      LL+  +   
Sbjct: 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLA 346

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 89.2 bits (221), Expect = 1e-19
 Identities = 29/214 (13%), Positives = 54/214 (25%), Gaps = 29/214 (13%)

Query: 46  KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGK---LSCVKKLI 102
           +Q    L   Y          +   L+++        +    VAA+ G    L  +  L+
Sbjct: 61  EQVRQLLCLYYAHYN-----RNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLL 115

Query: 103 ESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA 162
            S   +    + +       AA  GH   L  L               +  + +      
Sbjct: 116 TSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCEL----------APTEIMAMIQAENY 164

Query: 163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAA-RGGSLECIRELLAWG 221
               LAA  G    ++ L +      ++             +AA   G    I  LL   
Sbjct: 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAE--NYYAFRWAAVGRGHHNVINFLLDCP 222

Query: 222 ADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255
                 +           +Y  +     +     
Sbjct: 223 VMLAYAEIH-------EFEYGEKYVNPFIARHVN 249

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 87.7 bits (217), Expect = 4e-19
 Identities = 46/263 (17%), Positives = 66/263 (25%), Gaps = 68/263 (25%)

Query: 43  GYGKQSALHLAAAYGQ---IEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVK 99
           G   +    +AA  G    ++ L +LL           +         +AA NG L  + 
Sbjct: 89  GIKSEVICFVAAITGCSSALDTLCLLLTS---DEIVKVIQAENYQAFRLAAENGHLHVLN 145

Query: 100 KLIESGAFILNFD-SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD 158
           +L E     +      +       AA  GH   L  L   A T   A             
Sbjct: 146 RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI----------Q 195

Query: 159 ESGATPLHLAA-RQGWSECVHTLLDNGA-----LACSSTGG------------------- 193
                    AA  +G    ++ LLD               G                   
Sbjct: 196 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 255

Query: 194 --------NGY----------PGSTPLHFAARGGS---LECIRELLAW-----GADRVQP 227
                   +G            G   L    R      L+ IR LL+       A     
Sbjct: 256 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 315

Query: 228 DAFGRIPYAIALKYKHQACAALL 250
                    +AL+  +Q   ALL
Sbjct: 316 PGDANELLRLALRLGNQGACALL 338

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 86.5 bits (214), Expect = 9e-19
 Identities = 42/230 (18%), Positives = 66/230 (28%), Gaps = 50/230 (21%)

Query: 14  ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAA-YGQIEVLSMLLDQ---- 68
           A  +A ENG L ++  + E  PT            A   AA   G   V++ LLD     
Sbjct: 166 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML 225

Query: 69  ----------------FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFD 112
                            F+  + + L         ++  +G    V K           +
Sbjct: 226 AYAEIHEFEYGEKYVNPFIARHVNRLK-EMHDAFKLSNPDGVFDLVTKS----------E 274

Query: 113 SLQGRTCLHYAAYYGHS---DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA 169
            LQG   L            D ++ LL+      +A                   L LA 
Sbjct: 275 CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP-------TATIPGDANELLRLAL 327

Query: 170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219
           R G       LL   ++   +   N        +    GG L+ +R +  
Sbjct: 328 RLGNQGACALLLSIPSVLALTKANN-------YYINETGGRLD-LRAVAL 369

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 77.2 bits (191), Expect = 1e-17
 Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 23/130 (17%)

Query: 123 AAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLD 182
            + + H      L+               R  ++        L  AAR G  + V  L+ 
Sbjct: 1   GSSHHHHHHSSGLV--------------PRGSHM-GSDLGKKLLEAARAGQDDEVRILMA 45

Query: 183 NGAL--ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           NGA   A    G      STPLH AAR G LE ++ LL  GAD    D FG+  + I++ 
Sbjct: 46  NGADVAAKDKNG------STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99

Query: 241 YKHQACAALL 250
             ++  A +L
Sbjct: 100 NGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 21/129 (16%)

Query: 53  AAAYGQIEVLSMLLDQFFLYTNTDA-LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNF 111
            +++      S L+ +        + +       L+ AA  G+   V+ L+ +GA +   
Sbjct: 1   GSSHHHHHHSSGLVPR-------GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AA 52

Query: 112 DSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ 171
               G T LH AA  GH + ++ LL A      A+       V  +D+ G T   ++   
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEAG-----AD-------VXAQDKFGKTAFDISIDN 100

Query: 172 GWSECVHTL 180
           G  +    L
Sbjct: 101 GNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 13/120 (10%)

Query: 18  AVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNT 75
              +        +V   +                L  AA  GQ + + +L+       + 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSDLGK-------KLLEAARAGQDDEVRILMAN---GADV 50

Query: 76  DALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQAL 135
            A ++   TPL +AA NG L  VK L+E+GA +   D   G+T    +   G+ D  + L
Sbjct: 51  AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK-FGKTAFDISIDNGNEDLAEIL 109

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 69.6 bits (170), Expect = 2e-13
 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 157 RDESGATPLHLAARQGWSECVHT---LLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
             E   T LHLA R      +H    L+ N       TG     GST LH+     + EC
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG----KGSTALHYCCLTDNAEC 220

Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           ++ LL   A     +  G  P  IA + KH+ C  LL
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.2 bits (135), Expect = 5e-09
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 16/102 (15%)

Query: 83  QTPLMVAAMNGKLSCVK---KLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAA 139
           +T L +A  +   + +     L+++   +      +G T LHY     +++CL+ LL   
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-KGSTALHYCCLTDNAECLKLLLRGK 228

Query: 140 RTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLL 181
                A+       + I +ESG TPL +A R     C   L 
Sbjct: 229 -----AS-------IEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGA 106
           ++ALHLA        L ++        N D       T L    +     C+K L+   A
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229

Query: 107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAA 139
            I   +   G T L  A    H  C + L  A 
Sbjct: 230 SIEIANE-SGETPLDIAKRLKHEHCEELLTQAL 261

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.2 bits (130), Expect = 2e-08
 Identities = 23/104 (22%), Positives = 32/104 (30%), Gaps = 13/104 (12%)

Query: 115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS 174
              T LH A        L  +    + S           ++ +   G+T LH       +
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGN---------LDKQTGKGSTALHYCCLTDNA 218

Query: 175 ECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
           EC+  LL   A    +       G TPL  A R     C   L 
Sbjct: 219 ECLKLLLRGKASIEIANES----GETPLDIAKRLKHEHCEELLT 258

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 158 DESGATPLHLAARQGWSECVHT---LLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI 214
                  LHLA +      +     ++ NG    +        G+T LH+AA     +C+
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD----GNTALHYAALYNQPDCL 242

Query: 215 RELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA 255
           + LL   A     +  G     IA K  H+ C  LL  + A
Sbjct: 243 KLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.8 bits (134), Expect = 8e-09
 Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 16/101 (15%)

Query: 83  QTPLMVAAMNGKLSC---VKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAA 139
           +  L +A      +    V  +I++G  +    +  G T LHYAA Y   DCL+ LL   
Sbjct: 191 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYNQPDCLKLLLKG- 248

Query: 140 RTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL 180
                A        V   +E+G T L +A ++   EC   L
Sbjct: 249 ----RAL-------VGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 12/117 (10%)

Query: 47  QSALHLAAAYGQIEVLSM--LLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIES 104
           +  LHLA        L +   + Q     + DA      T L  AA+  +  C+K L++ 
Sbjct: 191 ELVLHLAVKVANQASLPLVDFIIQNGG--HLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 105 GAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG 161
            A +   +   G T L  A    H +C + L  A   +       F+  +++     
Sbjct: 249 RALVGTVNE-AGETALDIARKKHHKECEELLEQAQAGT-------FAFPLHVDYSWV 297

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 25/105 (23%), Positives = 35/105 (33%), Gaps = 18/105 (17%)

Query: 116 GRTCLHYAAYYGHSDCLQA--LLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGW 173
               LH A    +   L     +       + N       ++ +   G T LH AA    
Sbjct: 190 EELVLHLAVKVANQASLPLVDFI-------IQN----GGHLDAKAADGNTALHYAALYNQ 238

Query: 174 SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
            +C+  LL   AL  +        G T L  A +    EC  ELL
Sbjct: 239 PDCLKLLLKGRALVGTVNEA----GETALDIARKKHHKECE-ELL 278

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 11  SESALFVAVENGDL-QMIEAMVEAD---PTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL 66
               L+ A+ N DL  ++EA          + G  +   ++  LHLA        L ++ 
Sbjct: 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV- 190

Query: 67  DQFFLY--TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA 124
             F +    + DA      T L  AA+  +  C+K L++  A +   +   G T L  A 
Sbjct: 191 -DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-AGETALDIAR 248

Query: 125 YYGHSDCLQALLTAAR 140
              H +C + L  A  
Sbjct: 249 KKHHKECEELLEQAQA 264

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 19/106 (17%)

Query: 115 QGRTCLHYAAYYGHSDCL---QALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ 171
                LH A    +   L     ++                 ++ +   G T LH AA  
Sbjct: 170 PEELVLHLAVKVANQASLPLVDFII-----------Q-NGGHLDAKAADGNTALHYAALY 217

Query: 172 GWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
              +C+  LL            N   G T L  A +    EC   L
Sbjct: 218 NQPDCLKLLLKGR---ALVGTVNE-AGETALDIARKKHHKECEELL 259

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 57.1 bits (137), Expect = 4e-09
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
            +  ATPL  A           LL NGA    +       G  PLH A   G        
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADS----AGRGPLHHATILGHTGLACLF 287

Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           L  GAD    D+ GR P  IA++  +     LL
Sbjct: 288 LKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 13/101 (12%)

Query: 83  QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS 142
            TPL+ A     L   + L+++GA +   DS  GR  LH+A   GH+      L      
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADS-AGRGPLHHATILGHTGLACLFLKRGAD- 293

Query: 143 PVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN 183
                      +  RD  G  PL +A     ++ V  L   
Sbjct: 294 -----------LGARDSEGRDPLTIAMETANADIVTLLRLA 323

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 24/139 (17%), Positives = 43/139 (30%), Gaps = 6/139 (4%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIE 60
             + +            +     L  +   +     V  +  G    + L  A A   + 
Sbjct: 190 PSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLL 249

Query: 61  VLSMLLDQFFLY-TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTC 119
               LL        N +  +   + PL  A + G        ++ GA +   DS +GR  
Sbjct: 250 ACEFLL----QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS-EGRDP 304

Query: 120 LHYAAYYGHSDCLQALLTA 138
           L  A    ++D +  L  A
Sbjct: 305 LTIAMETANADIVTLLRLA 323

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.1 bits (111), Expect = 6e-06
 Identities = 39/165 (23%), Positives = 52/165 (31%), Gaps = 9/165 (5%)

Query: 139 ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPG 198
            R   + +              GA     +        +   L +GA      GG     
Sbjct: 178 PRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGG--QDN 235

Query: 199 STPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL 258
           +TPL  A    SL     LL  GA+  Q D+ GR P   A    H   A L     A+  
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295

Query: 259 VW------PLQLRNMTDLNPEAKELLEKALMESNEEREKAILNET 297
                   PL +  M   N +   LL  A M   E  +    +ET
Sbjct: 296 ARDSEGRDPLTIA-METANADIVTLLRLAKMREAEAAQGQAGDET 339

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 299 CSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPD 358
                   +  + +      S  +LC IC EN   ++I+PCGH MC  C L      +  
Sbjct: 310 TPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSC-LTSWQESEG- 367

Query: 359 IITAVPEVPACPFCRCSI 376
                     CPFCRC I
Sbjct: 368 --------QGCPFCRCEI 377

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 50.8 bits (121), Expect = 5e-08
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 12/113 (10%)

Query: 279 EKALMESNEEREKAILNETICSVPSTSPSDAEVDDNTSEASDVEL-CCICFENLCTIEIK 337
            K   E+  + +   L +T            EV  + ++  + EL C IC E        
Sbjct: 21  SKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTL 80

Query: 338 PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIINSATE 390
            C H  C++C +     +K +          CP CR  I +   + ++++   
Sbjct: 81  NCAHSFCSYC-INEWMKRKIE----------CPICRKDIKSKTYSLVLDNCIN 122

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 16/65 (24%)

Query: 317 EASDVELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCS 375
           +  +  LC +C E        PCGH   C  C   L                +CP CR  
Sbjct: 14  KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL---------------QSCPVCRSR 58

Query: 376 IANLV 380
           + ++ 
Sbjct: 59  VEHVQ 63

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 16/82 (19%)

Query: 300 SVPSTSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPD 358
               +   +   ++      + +LC IC +    I   PCGH   C  C  A+       
Sbjct: 4   GSSGSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------- 56

Query: 359 IITAVPEVPACPFCRCSIANLV 380
                     CP C   I    
Sbjct: 57  --------DKCPMCYTVITFKQ 70

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 14/68 (20%)

Query: 316 SEASDVELCCICFENL--CTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFC 372
              + ++ C +C +      I     GH   C HC   L                 CP C
Sbjct: 2   DCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGAS-----------CPIC 50

Query: 373 RCSIANLV 380
           +  I  ++
Sbjct: 51  KKEIQLVI 58

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 16/70 (22%)

Query: 312 DDNTSEASDVELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACP 370
                   + + C +C        + PC H  +C  C                     CP
Sbjct: 6   SGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF---------------QQCP 50

Query: 371 FCRCSIANLV 380
            CR  +    
Sbjct: 51  MCRQFVQESF 60

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 14/65 (21%)

Query: 313 DNTSEASDVELCCICFENLCTIEIKPCGHQMCAHC-TLALCCHKKPDIITAVPEVPACPF 371
               + +D E CCIC +    + + PC H  C  C       H+             CP 
Sbjct: 7   GRVKQLTDEEECCICMDGRADLIL-PCAHSFCQKCIDKWSDRHRN------------CPI 53

Query: 372 CRCSI 376
           CR  +
Sbjct: 54  CRLQM 58

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 11/64 (17%)

Query: 313 DNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC 372
            NT+ +  V  C IC +        PC H  C  C           +  A      C  C
Sbjct: 7   GNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLC-----------VKGASWLGKRCALC 55

Query: 373 RCSI 376
           R  I
Sbjct: 56  RQEI 59

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 14/67 (20%)

Query: 317 EASDVELCCICFENL--CTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCR 373
             + +E C IC        I     GH   C  C   L    KP           CP CR
Sbjct: 4   PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKP-----------CPVCR 52

Query: 374 CSIANLV 380
             I  +V
Sbjct: 53  QPIQMIV 59

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 13/82 (15%)

Query: 312 DDNTSEASDVELCCICFENLCT-IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACP 370
           + +    ++V  C IC E L        C    C  C       ++            CP
Sbjct: 13  EQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQ----------CP 62

Query: 371 FCRCSI--ANLVAARIINSATE 390
            CR  +    LV  R     T+
Sbjct: 63  HCRAPLQLRELVNCRWAEEVTQ 84

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 318 ASDVELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
           A+  E C IC E+     +  PC H  C  C           I   + + P CP C+  +
Sbjct: 2   ATVAERCPICLEDPSNYSMALPCLHAFCYVC-----------ITRWIRQNPTCPLCKVPV 50

Query: 377 ANLV 380
            ++V
Sbjct: 51  ESVV 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	460
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.32
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.21
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.2
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.08
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.06
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.03
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.01
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.98
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.93
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.92
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.88
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.87
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.86
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.85
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.84
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.82
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.82
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.82
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.81
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.81
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.81
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.8
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.79
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.79
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.77
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.77
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.76
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.76
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.74
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.73
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.73
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.72
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.68
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.68
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.66
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.66
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.64
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.62
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.62
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.62
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.6
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.6
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.56
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.56
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.54
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.49
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.49
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.47
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.45
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.45
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.45
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.44
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.4
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.38
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.37
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.3
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.23
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.14
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.14
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.05
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	97.98
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.96
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	97.94
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.92
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.82
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.77
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.64
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.42
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.22
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	96.81
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	96.74
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	93.23
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	92.44
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	91.05
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	85.92
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	83.73
3nw0_A	238	Non-structural maintenance of chromosomes element	81.69

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-41  Score=323.62  Aligned_cols=268  Identities=23%  Similarity=0.261  Sum_probs=238.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618           10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA   89 (460)
Q Consensus        10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A   89 (460)
                      +|.|+|+.|++.|++++|++|+++|++++... +..|.||||+|+..|+.+++++|++.   |++++..+..|.||||+|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A   79 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRH---GADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHH
Confidence            57899999999999999999999999886542 46789999999999999999999999   999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618           90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA  169 (460)
Q Consensus        90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~  169 (460)
                      +..|+.+++++|+++|+++ +..+..|+||||+|+..|+.+++++|++.+.+......  .....+..+..|.||||+|+
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~--~~~~~~~~~~~g~t~L~~A~  156 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK--TKEDQERLRKGGATALMDAA  156 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCC--CCHHHHHTTCCCCCHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccc--cHHHHHhhccCCCcHHHHHH
Confidence            9999999999999999988 77788999999999999999999999999987322110  00112223888999999999


Q ss_pred             HcCCHHHHHHHHHc-CCccccCCCCCCCCCChHHHHHHhcCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH
Q 012618          170 RQGWSECVHTLLDN-GALACSSTGGNGYPGSTPLHFAARGGS----LECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ  244 (460)
Q Consensus       170 ~~g~~~~v~~Ll~~-ga~~~~~~~~~d~~g~TpLh~A~~~g~----~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~  244 (460)
                      ..|+.+++++|++. |+    ..+..+..|.||||+|+..++    .+++++|+++|++++.+|..|.||||+|+..++.
T Consensus       157 ~~~~~~~v~~Ll~~~~~----~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  232 (285)
T 1wdy_A          157 EKGHVEVLKILLDEMGA----DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL  232 (285)
T ss_dssp             HHTCHHHHHHHHHTSCC----CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCH
T ss_pred             HcCCHHHHHHHHHhcCC----CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            99999999999998 88    556778899999999999999    9999999999999999999999999999999999


Q ss_pred             HHHHhhCC-CCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618          245 ACAALLNP-SSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETI  298 (460)
Q Consensus       245 ~i~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~  298 (460)
                      +++++|++ .|+++.          ..+..++++|+.|+..++.+.++.+++...
T Consensus       233 ~~v~~Ll~~~g~~~~----------~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga  277 (285)
T 1wdy_A          233 GLVQRLLEQEHIEIN----------DTDSDGKTALLLAVELKLKKIAELLCKRGA  277 (285)
T ss_dssp             HHHHHHHHSSSCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred             HHHHHHHhccCCCcc----------ccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence            99999998 788554          356678899999999999999999987643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.6e-42  Score=324.09  Aligned_cols=228  Identities=28%  Similarity=0.324  Sum_probs=183.7

Q ss_pred             CCCCCcHHHHHHHcC-------------CHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCC
Q 012618            8 RERSESALFVAVENG-------------DLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN   74 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g-------------~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~   74 (460)
                      +..|.||||+|+..|             +.+++++|+++|++++... +..|.||||+|+..|+.++|++|++.   |++
T Consensus         7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~   82 (253)
T 1yyh_A            7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEA---SAD   82 (253)
T ss_dssp             ---------------------------------------------CC-CTTSCCHHHHHHHTTCHHHHHHHHHT---TCC
T ss_pred             CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHc---CCC
Confidence            568999999999987             9999999999999986543 46899999999999999999999999   999


Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcccc
Q 012618           75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFV  154 (460)
Q Consensus        75 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v  154 (460)
                      ++..+..|.||||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+++            +
T Consensus        83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~  150 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------V  150 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC------------T
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC------------C
Confidence            9999999999999999999999999999999855588889999999999999999999999999988            8


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCH
Q 012618          155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP  234 (460)
Q Consensus       155 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tp  234 (460)
                      +.+|..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus       151 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp  226 (253)
T 1yyh_A          151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP  226 (253)
T ss_dssp             TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCH
Confidence            9999999999999999999999999999999    556678899999999999999999999999999999999999999


Q ss_pred             HHHHHHhChHHHHHhhCCCCC
Q 012618          235 YAIALKYKHQACAALLNPSSA  255 (460)
Q Consensus       235 L~~A~~~~~~~i~~~Ll~~ga  255 (460)
                      |++|+++|+.+++++|.....
T Consensus       227 l~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          227 RDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HHHHHHTTCHHHHHHHHC---
T ss_pred             HHHHHHcCCHHHHHHHHHHhh
Confidence            999999999999999977654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=9.6e-41  Score=327.58  Aligned_cols=253  Identities=26%  Similarity=0.297  Sum_probs=222.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCC---------------
Q 012618           10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN---------------   74 (460)
Q Consensus        10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~---------------   74 (460)
                      +|.|+||.||+.|++++|++||++|++++... +..|.||||+|+..|+.++|++||++   |++               
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~---ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRH---GADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCcCHHHHHHHcCCHHHHHHHHHc---CCchhhhccCCCchhHHH
Confidence            46889999999999999999999999986543 35689999999999999999999998   554               


Q ss_pred             ------------------CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCcccc---------CCCCCCChHHHHHHHcC
Q 012618           75 ------------------TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILN---------FDSLQGRTCLHYAAYYG  127 (460)
Q Consensus        75 ------------------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~---------~~~~~g~t~L~~A~~~g  127 (460)
                                        ++..|..|.||||+|+..|+.+++++|++.|+++..         ..+..|.||||+|+..|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence                              456677899999999999999999999999987621         23456899999999999


Q ss_pred             CHHHHHHHHHh-cCCCCCcccCCCccccccCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCccccCCCCCCCCCChHH
Q 012618          128 HSDCLQALLTA-ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGW----SECVHTLLDNGALACSSTGGNGYPGSTPL  202 (460)
Q Consensus       128 ~~~iv~~Ll~~-~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~~d~~g~TpL  202 (460)
                      +.++|++|++. +++            ++.+|..|.|+|+.++..+.    ..++++|+++|+    +++.+|..|+|||
T Consensus       180 ~~~~v~~LL~~~gad------------~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~ga----d~n~~d~~g~t~L  243 (337)
T 4g8k_A          180 HVEVLKILLDEMGAD------------VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA----DVNVRGERGKTPL  243 (337)
T ss_dssp             CHHHHHHHHHHSCCC------------TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTC----CTTCCCGGGCCHH
T ss_pred             CHHHHHHHHhccCCC------------cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCC----CCCCcCCCCCCHH
Confidence            99999999965 666            89999999999999887554    468899999999    5566788999999


Q ss_pred             HHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHH
Q 012618          203 HFAARGGSLECIRELLAW-GADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKA  281 (460)
Q Consensus       203 h~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a  281 (460)
                      |+|+..|+.++|++|++. |++++.+|..|+||||+|+..|+.+++++|+++||+++..               ++|+.|
T Consensus       244 ~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~---------------~~L~~A  308 (337)
T 4g8k_A          244 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG---------------DLVMTA  308 (337)
T ss_dssp             HHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC---------------CHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---------------CHHHHH
Confidence            999999999999999985 8999999999999999999999999999999999977532               379999


Q ss_pred             HhhhhHHHHHHhhhcc
Q 012618          282 LMESNEEREKAILNET  297 (460)
Q Consensus       282 ~~~~~~~~~~~ll~~~  297 (460)
                      +...+.+.++.|++..
T Consensus       309 ~~~~~~~iv~~Ll~~G  324 (337)
T 4g8k_A          309 RRNYDHSLVKVLLSHG  324 (337)
T ss_dssp             HHTTCHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHCc
Confidence            9999999999999754

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.1e-41  Score=340.63  Aligned_cols=233  Identities=30%  Similarity=0.365  Sum_probs=169.8

Q ss_pred             CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC
Q 012618            2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR   80 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   80 (460)
                      |.++.. ++.|.||||+|+..|++++|++|+++|++++..  +..|.||||+|+..|+.++|++|+++   +++++.++.
T Consensus         4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~   78 (437)
T 1n11_A            4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQN---KAKVNAKAK   78 (437)
T ss_dssp             -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCS--SSCCCCHHHHHHHHTCHHHHHHHHHH---TCCSSCCCT
T ss_pred             CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCCCC
Confidence            444443 568999999999999999999999999888543  45788999999999999999999999   999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC
Q 012618           81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES  160 (460)
Q Consensus        81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~  160 (460)
                      .|+||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+..            ++..+..
T Consensus        79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------------~~~~~~~  145 (437)
T 1n11_A           79 DDQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEAS------------QACMTKK  145 (437)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------SCCCCTT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC------------CcCCCCC
Confidence            9999999999999999999999999988 77778899999999999999999999998877            4455555


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 012618          161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK  240 (460)
Q Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~  240 (460)
                      |.||||+|+..|+.+++++|+++|+    ..+..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus       146 g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  221 (437)
T 1n11_A          146 GFTPLHVAAKYGKVRVAELLLERDA----HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK  221 (437)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHH
Confidence            6666666666666666666666655    333344455555555555555555555555555555555555555555555


Q ss_pred             hChHHHHHhhCCCCCC
Q 012618          241 YKHQACAALLNPSSAE  256 (460)
Q Consensus       241 ~~~~~i~~~Ll~~ga~  256 (460)
                      .++.+++++|+++|++
T Consensus       222 ~~~~~~~~~Ll~~g~~  237 (437)
T 1n11_A          222 QNQVEVARSLLQYGGS  237 (437)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            5555555555555553

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.9e-41  Score=313.61  Aligned_cols=227  Identities=26%  Similarity=0.328  Sum_probs=205.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCC
Q 012618            7 CRERSESALFVAVENGDLQMIEAMVE----ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYK   82 (460)
Q Consensus         7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~----~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g   82 (460)
                      .++.|.||||+|+..|+.++|++|++    .+.+++.  .+..|.||||+|+..|+.+++++|++.   |++++..+..|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g   79 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI--YNNLRQTPLHLAVITTLPSVVRLLVTA---GASPMALDRHG   79 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTS
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--ccccCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCC
Confidence            46789999999999999999999997    6767644  346799999999999999999999999   99999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCC----ccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618           83 QTPLMVAAMNGKLSCVKKLIESGA----FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD  158 (460)
Q Consensus        83 ~tpL~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d  158 (460)
                      .||||+|+..|+.+++++|++.++    ++ +..+..|.||||+|+..|+.+++++|++.+.+            ++..+
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~  146 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGAD------------IDAVD  146 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC------------ccccc
Confidence            999999999999999999999987    44 77788999999999999999999999999988            77777


Q ss_pred             -CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 012618          159 -ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI  237 (460)
Q Consensus       159 -~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~  237 (460)
                       ..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|+|||++
T Consensus       147 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  222 (241)
T 1k1a_A          147 IKSGRSPLIHAVENNSLSMVQLLLQHGA----NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV  222 (241)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTT
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHH
Confidence             889999999999999999999999999    556678899999999999999999999999999999999999999999


Q ss_pred             HHHhChHHHHHhhCCCCC
Q 012618          238 ALKYKHQACAALLNPSSA  255 (460)
Q Consensus       238 A~~~~~~~i~~~Ll~~ga  255 (460)
                      |+..++.++++.|.+.++
T Consensus       223 A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          223 ARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             CSSHHHHHHHTC------
T ss_pred             HHhcCcHHHHhhhccCCC
Confidence            999999999999988765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.2e-41  Score=311.67  Aligned_cols=226  Identities=27%  Similarity=0.285  Sum_probs=212.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618           10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA   89 (460)
Q Consensus        10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A   89 (460)
                      .+.++|+.|++.|+++.|++|++.++..... .+..|.||||+|+..|+.+++++|++.   +++++..+..|.||||+|
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A   80 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATR-TDQDSRTALHWACSAGHTEIVEFLLQL---GVPVNDKDDAGWSPLHIA   80 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHH
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhc-CCCCCCCHHHHHHHcCcHHHHHHHHHh---CCCCCCcCCCCCCHHHHH
Confidence            5789999999999999999999998776443 357899999999999999999999999   999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618           90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA  169 (460)
Q Consensus        90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~  169 (460)
                      +..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+.+            ++.++..|.||||+|+
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~A~  147 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------------PDAKDHYDATAMHRAA  147 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHH
T ss_pred             HHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCCcCCCCCcHHHHHH
Confidence            9999999999999999988 77788999999999999999999999999988            7889999999999999


Q ss_pred             HcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHh
Q 012618          170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAAL  249 (460)
Q Consensus       170 ~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~  249 (460)
                      ..|+.+++++|+++|+    +.+..|..|.||||+|+..++.+++++|+++|++++.+|..|+|||++|+..++.+++++
T Consensus       148 ~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~l  223 (231)
T 3aji_A          148 AKGNLKMVHILLFYKA----STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL  223 (231)
T ss_dssp             HHTCHHHHHHHHHTTC----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHhcCC----CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence            9999999999999999    556678899999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCC
Q 012618          250 LNPSSAE  256 (460)
Q Consensus       250 Ll~~ga~  256 (460)
                      |+++|++
T Consensus       224 L~~~~a~  230 (231)
T 3aji_A          224 AEGEEAS  230 (231)
T ss_dssp             HHHHHHC
T ss_pred             Hcccccc
Confidence            9887763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.4e-41  Score=326.12  Aligned_cols=263  Identities=27%  Similarity=0.307  Sum_probs=199.5

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc---------ccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCcc
Q 012618            7 CRERSESALFVAVENGDLQMIEAMVEADPTV---------LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA   77 (460)
Q Consensus         7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~---------~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~   77 (460)
                      ....|.|+||+|+..|+.+.+..++..++..         .....+..|.||||+|+..|+.++|++|++.   +++++.
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~---g~~~~~   87 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ---GWAVNI   87 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT---TCCSCE
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC---CCCCCC
Confidence            4567999999999999988888877654331         1123457899999999999999999999999   999999


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccC
Q 012618           78 LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR  157 (460)
Q Consensus        78 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~  157 (460)
                      +|..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++            ++. 
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~-  153 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGAS------------VQP-  153 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------SSC-
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC------------CCC-
Confidence            9999999999999999999999999999988 77788999999999999999999999999887            444 


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 012618          158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAI  237 (460)
Q Consensus       158 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~  237 (460)
                      +..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.++|++|+++|++++. |..|.||||+
T Consensus       154 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~  228 (285)
T 3d9h_A          154 ESDLASPIHEAARRGHVECVNSLIAYGG----NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHA  228 (285)
T ss_dssp             SCTTSCHHHHHHHHTCHHHHHHHHHTTC----CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHH
Confidence            3459999999999999999999999999    5566788999999999999999999999999999995 8899999999


Q ss_pred             HHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhccccCCCC
Q 012618          238 ALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETICSVPS  303 (460)
Q Consensus       238 A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~~~~~s  303 (460)
                      |+..++.+++++|+++|+++..          .+..++++|+.|.  .+.+.++.+++....+.+.
T Consensus       229 A~~~~~~~~v~~Ll~~gad~~~----------~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~  282 (285)
T 3d9h_A          229 VVRTASEELACLLMDFGADTQA----------KNAEGKRPVELVP--PESPLAQLFLEREGASLPK  282 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred             HHHcCCHHHHHHHHHCCCCCCC----------cCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence            9999999999999999996654          4566778888877  3356777777664433333

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-40  Score=338.28  Aligned_cols=254  Identities=26%  Similarity=0.355  Sum_probs=186.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618           10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA   89 (460)
Q Consensus        10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A   89 (460)
                      .|.||||+|+..|+.+++++|++++++++..  +..|.||||+|+..|+.+++++|+++   +++++..+..|.||||+|
T Consensus       145 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A  219 (437)
T 1n11_A          145 KGFTPLHVAAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPR---GGSPHSPAWNGYTPLHIA  219 (437)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CSSCCCHHHHHHHTTCHHHHHHHGGG---TCCSCCCCTTCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCcCCCCCCHHHHH
Confidence            4555555555555555555555555554322  23455555555555555555555555   555555555555666666


Q ss_pred             HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618           90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA  169 (460)
Q Consensus        90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~  169 (460)
                      +..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+++            ++..+..|.||||+|+
T Consensus       220 ~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~------------~~~~~~~g~t~L~~A~  286 (437)
T 1n11_A          220 AKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQAN------------GNLGNKSGLTPLHLVA  286 (437)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC------------TTCCCTTCCCHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC------------CCCCCCCCCCHHHHHH
Confidence            6666666666666655554 44455566666666666666666666665555            6888899999999999


Q ss_pred             HcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHh
Q 012618          170 RQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAAL  249 (460)
Q Consensus       170 ~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~  249 (460)
                      ..|+.+++++|+++|+    ..+..+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..++.+++++
T Consensus       287 ~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~  362 (437)
T 1n11_A          287 QEGHVPVADVLIKHGV----MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL  362 (437)
T ss_dssp             HHTCHHHHHHHHHHTC----CTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHhCCc----cCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHH
Confidence            9999999999999998    556677889999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhh
Q 012618          250 LNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILN  295 (460)
Q Consensus       250 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~  295 (460)
                      |+++|+++..          .+.+++++|+.|...+..+..+.+..
T Consensus       363 Ll~~ga~~~~----------~~~~g~t~l~~A~~~g~~~~~~~l~~  398 (437)
T 1n11_A          363 LLKNGASPNE----------VSSDGTTPLAIAKRLGYISVTDVLKV  398 (437)
T ss_dssp             HHHTTCCSCC----------CCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHCcCCCCC----------CCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            9999997654          45578899999999988887776654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-40  Score=315.13  Aligned_cols=231  Identities=27%  Similarity=0.306  Sum_probs=215.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM   87 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~   87 (460)
                      +..|.||||+|+..|+.++|++|+++|++++..  +..|.||||+|+..|+.+++++|+++   |++++..+..|.||||
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~  110 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFLLAAIAGSVKLLKLFLSK---GADVNECDFYGFTAFM  110 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHT---TCCTTCBCTTCCBHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCcccCCHHH
Confidence            457899999999999999999999999998543  46899999999999999999999999   9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCccccCC----------CCCCChHHHHHHHcCCHHHHHHHHHh-cCCCCCcccCCCcccccc
Q 012618           88 VAAMNGKLSCVKKLIESGAFILNFD----------SLQGRTCLHYAAYYGHSDCLQALLTA-ARTSPVANTWGFSRFVNI  156 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g~~~~~~~----------~~~g~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~v~~  156 (460)
                      +|+..|+.+++++|++.|+++ +..          +..|.||||+|+..|+.+++++|++. +.+            ++.
T Consensus       111 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------------~~~  177 (285)
T 1wdy_A          111 EAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD------------VNA  177 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC------------TTC
T ss_pred             HHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC------------CCc
Confidence            999999999999999999987 433          67899999999999999999999998 766            889


Q ss_pred             CCCCCCCHHHHHHHcCC----HHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCC
Q 012618          157 RDESGATPLHLAARQGW----SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA-WGADRVQPDAFG  231 (460)
Q Consensus       157 ~d~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G  231 (460)
                      .|..|.||||+|+..++    .+++++|+++|+    +.+.++..|.||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus       178 ~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g  253 (285)
T 1wdy_A          178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGA----DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG  253 (285)
T ss_dssp             CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC----CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTS
T ss_pred             cCCCCCCHHHHHHHccccchHHHHHHHHHHcCC----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCC
Confidence            99999999999999999    999999999999    556778899999999999999999999999 899999999999


Q ss_pred             CCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618          232 RIPYAIALKYKHQACAALLNPSSAEPLVW  260 (460)
Q Consensus       232 ~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~  260 (460)
                      +||||+|+..++.+++++|+++|+++...
T Consensus       254 ~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          254 KTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCCCcc
Confidence            99999999999999999999999988754

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=6.4e-42  Score=339.56  Aligned_cols=232  Identities=19%  Similarity=0.211  Sum_probs=211.4

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618            7 CRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL   86 (460)
Q Consensus         7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL   86 (460)
                      .+..|.||||+|+..|+.++|++|+++|++++..  +..|.||||+|+..|+.++|++|++.   +++++  +..|.|||
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~--~~~g~t~L   88 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAKYLASV---GEVHS--LWHGQKPI   88 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHCCHHHHHHHHHH---CCCCC--CBTTBCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCHHHHHHHHHC---CCCcc--ccCCCCHH
Confidence            3567899999999999999999999999988554  56899999999999999999999999   77655  35799999


Q ss_pred             HHHHHcCCHHHHHHHHHc----CCccccC-----------------CCCCCChHHHHHHHcC--CHHHHHHHHHhcCCCC
Q 012618           87 MVAAMNGKLSCVKKLIES----GAFILNF-----------------DSLQGRTCLHYAAYYG--HSDCLQALLTAARTSP  143 (460)
Q Consensus        87 ~~A~~~g~~~~v~~Ll~~----g~~~~~~-----------------~~~~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~  143 (460)
                      |+|+..|+.+++++|++.    |+++ +.                 .+..|.||||+|+..|  +.+++++|++.+++  
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~--  165 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS--  165 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC--
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC--
Confidence            999999999999999999    7766 33                 6678999999999999  99999999999988  


Q ss_pred             CcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-cccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 012618          144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGAL-ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA  222 (460)
Q Consensus       144 ~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga  222 (460)
                                ++.+|..|.||||+|+..|+.+++++|+++|++ .....+..|..|.||||+|+..|+.++|++|+++|+
T Consensus       166 ----------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  235 (364)
T 3ljn_A          166 ----------PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI  235 (364)
T ss_dssp             ----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTC
T ss_pred             ----------CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence                      899999999999999999999999999999994 112267778899999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCC
Q 012618          223 DRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL  258 (460)
Q Consensus       223 d~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~  258 (460)
                      |++.+|..|+||||+|+..++.+++++|+++|+++.
T Consensus       236 d~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL  271 (364)
T ss_dssp             CTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHH
T ss_pred             CCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchh
Confidence            999999999999999999999999999999987653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.4e-40  Score=306.77  Aligned_cols=222  Identities=25%  Similarity=0.326  Sum_probs=206.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM   87 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~   87 (460)
                      +..|.||||+|+..|+.+++++|+++|++++..  +..|.||||+|+..|+.+++++|++.   |++++..+..|.||||
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVKYLIKA---GALVDPKDAEGSTCLH   82 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTT---TCCCCCCCTTSCCHHH
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCcc--CCCCCCHHHHHHHhCCHHHHHHHHhC---CCCCCCCCCCCCcHHH
Confidence            567999999999999999999999999998554  45789999999999999999999999   9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHH
Q 012618           88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL  167 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~  167 (460)
                      +|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+++            ++.++..|.||||+
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~  150 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD------------INIRDNEENICLHW  150 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------CCccCCCCCCHHHH
Confidence            999999999999999999444478888999999999999999999999999988            78999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHH
Q 012618          168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACA  247 (460)
Q Consensus       168 A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~  247 (460)
                      |+..|+.+++++|+++|+    +.+..|..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+.+++.+.+
T Consensus       151 A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~  226 (237)
T 3b7b_A          151 AAFSGCVDIAEILLAAKC----DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSA  226 (237)
T ss_dssp             HHHHCCHHHHHHHHTTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999    5566788999999999999999999999999999999999999999999999988655


Q ss_pred             Hhh
Q 012618          248 ALL  250 (460)
Q Consensus       248 ~~L  250 (460)
                      ..|
T Consensus       227 ~~l  229 (237)
T 3b7b_A          227 LQM  229 (237)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.5e-40  Score=316.30  Aligned_cols=223  Identities=25%  Similarity=0.338  Sum_probs=205.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM   87 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~   87 (460)
                      +..|.||||+|+..|+.++|++|++.|++++..  +.+|.||||+|+..|+.++|++|++.   +++++..|..|.||||
T Consensus        56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~~~~g~t~L~  130 (285)
T 3d9h_A           56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKH---GAQVNGVTADWHTPLF  130 (285)
T ss_dssp             SCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEE--CTTCCCHHHHHHHTTCHHHHHHHHHT---TCCSSCCCTTCCCHHH
T ss_pred             CccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHCCcHHHHHHHHHC---CCCCCCCCCCCCCHHH
Confidence            567999999999999999999999999988543  56899999999999999999999999   9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHH
Q 012618           88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL  167 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~  167 (460)
                      +|+..|+.+++++|++.|+++ +.. ..|.||||+|+..|+.+++++|++.+++            ++.+|..|.||||+
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~-~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------~~~~d~~g~t~L~~  196 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGASV-QPE-SDLASPIHEAARRGHVECVNSLIAYGGN------------IDHKISHLGTPLYL  196 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCS-SCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCBTTTBCHHHH
T ss_pred             HHHHcCHHHHHHHHHHCCCCC-CCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCC------------CCCcCCCCCCHHHH
Confidence            999999999999999999987 433 3599999999999999999999999988            89999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHH
Q 012618          168 AARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACA  247 (460)
Q Consensus       168 A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~  247 (460)
                      |+..|+.+++++|+++|++++     .+..|.||||+|+..++.+++++|+++|+|++.+|..|+|||++|+  ++.+++
T Consensus       197 A~~~~~~~~v~~Ll~~ga~~~-----~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~  269 (285)
T 3d9h_A          197 ACENQQRACVKKLLESGADVN-----QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLA  269 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT-----CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHH
T ss_pred             HHHcCcHHHHHHHHHCCCCCC-----CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHH
Confidence            999999999999999999654     2678999999999999999999999999999999999999999999  456899


Q ss_pred             HhhCCC-CCC
Q 012618          248 ALLNPS-SAE  256 (460)
Q Consensus       248 ~~Ll~~-ga~  256 (460)
                      ++|+++ |++
T Consensus       270 ~~Ll~~~~a~  279 (285)
T 3d9h_A          270 QLFLEREGAS  279 (285)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHhhccC
Confidence            999887 553

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.8e-40  Score=321.87  Aligned_cols=264  Identities=23%  Similarity=0.273  Sum_probs=225.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEA-DPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL   86 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL   86 (460)
                      ++.+.++|+.|+..|+.+.|+.|+.. +.+++.  .+..|.||||+|+..|+.++|++|++.   |++++..|..|.|||
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L   95 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHA--SDGRKSTPLHLAAGYNRVRIVQLLLQH---GADVHAKDKGGLVPL   95 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCC--SSTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHH
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhcCCCccc--CCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCcHH
Confidence            34578999999999999999999986 445433  356899999999999999999999999   999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcc--------------
Q 012618           87 MVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSR--------------  152 (460)
Q Consensus        87 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~--------------  152 (460)
                      |+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+++.......+...              
T Consensus        96 ~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~  174 (351)
T 3utm_A           96 HNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT  174 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHH
Confidence            9999999999999999999988 7778899999999999999999999999998865543332211              


Q ss_pred             ----------------------------ccccCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCccccCCCCCCCCCChH
Q 012618          153 ----------------------------FVNIRDESGATPLHLAARQ---GWSECVHTLLDNGALACSSTGGNGYPGSTP  201 (460)
Q Consensus       153 ----------------------------~v~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp  201 (460)
                                                  .....+..|.||||+|+..   +..+++++|+++|+    +.+..+..|.||
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~  250 (351)
T 3utm_A          175 YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGA----NVNEKNKDFMTP  250 (351)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTC----CTTCCCTTCCCH
T ss_pred             hhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCC----CcCCcCCCCCCH
Confidence                                        1123567899999999999   55899999999999    556778899999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHH
Q 012618          202 LHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKA  281 (460)
Q Consensus       202 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a  281 (460)
                      ||+|+..|+.++|++|+++|++++.+|..|+||||+|+..++.+++++|+++|+++..          .+..++++++.|
T Consensus       251 L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----------~~~~g~tal~~a  320 (351)
T 3utm_A          251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI----------ISLQGFTAAQMG  320 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC----------cCCCCCChhhhh
Confidence            9999999999999999999999999999999999999999999999999999997765          344566777766


Q ss_pred             HhhhhHHHHHHhhh
Q 012618          282 LMESNEEREKAILN  295 (460)
Q Consensus       282 ~~~~~~~~~~~ll~  295 (460)
                          ..+..+.+.+
T Consensus       321 ----~~~~~~~l~~  330 (351)
T 3utm_A          321 ----NEAVQQILSE  330 (351)
T ss_dssp             ----CHHHHHHHHH
T ss_pred             ----hHHHHHHHHh
Confidence                3444444443

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.4e-40  Score=312.99  Aligned_cols=216  Identities=24%  Similarity=0.225  Sum_probs=156.9

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-cccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcH
Q 012618            7 CRERSESALFVAVENGDLQMIEAMVEADPTVL-GMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTP   85 (460)
Q Consensus         7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~-~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tp   85 (460)
                      .+..|.||||+|++.|+.++|++|++++++.. ....+..|.||||+|+..|+.++|++|+++   |++++..+..|+||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~~~~g~tp   81 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA---GAGVLVAERGGHTA   81 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCTTSCCH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCH
Confidence            36789999999999999999999999988732 223456899999999999999999999999   99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCcc----------------------------------------------ccCCCCCCChH
Q 012618           86 LMVAAMNGKLSCVKKLIESGAFI----------------------------------------------LNFDSLQGRTC  119 (460)
Q Consensus        86 L~~A~~~g~~~~v~~Ll~~g~~~----------------------------------------------~~~~~~~g~t~  119 (460)
                      ||+|+..|+.+++++|++.+++.                                              .+..+..|.||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            99999999999999999988652                                              23445566666


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCC
Q 012618          120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES-GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPG  198 (460)
Q Consensus       120 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g  198 (460)
                      ||+|+..|+.+++++|++.+++            ++.++.. |.||||+|+..|+.+++++|+++|+    +.+.+|..|
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga----d~~~~d~~g  225 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGAD------------LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA----DPTARMYGG  225 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCC------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC------------CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC----CCcccccCC
Confidence            6666666666666666666665            5555533 6666666666666666666666666    444555666


Q ss_pred             ChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Q 012618          199 STPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKY  241 (460)
Q Consensus       199 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~  241 (460)
                      .||||+|+..|+.+++++|+++|++++.+|..|.|||++|...
T Consensus       226 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          226 RTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred             CCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence            6666666666666666666666666666666666666666543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.1e-41  Score=319.33  Aligned_cols=228  Identities=25%  Similarity=0.259  Sum_probs=177.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc------ccCCCCCccHHHHHHHcCcH-HHHHHHHhccCCCCCCccCCC
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLG------MTSGYGKQSALHLAAAYGQI-EVLSMLLDQFFLYTNTDALNR   80 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~------~~~~~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~~   80 (460)
                      +.++.++|+.||..|++++|++||+.+++...      ...+..+.||||+|+..++. .++++|++.   |+++|..|.
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~---Gadvn~~d~   84 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS---GLGVNVTSQ   84 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C---CCCTTCCCT
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC---CCCCCCcCC
Confidence            45677899999999999999999999876421      22345688999999998875 588999999   999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC
Q 012618           81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES  160 (460)
Q Consensus        81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~  160 (460)
                      +|+||||+|+..|+.++|++|++.|+++ +..+..|.||||+|+..++.+++++|++.+++            ++.+|..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~------------~n~~d~~  151 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAK------------PNKKDLS  151 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------SCCCCTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCC------------CCCCCCC
Confidence            9999999999999999999999999998 77788999999999999999999999999988            8999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 012618          161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK  240 (460)
Q Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~  240 (460)
                      |.||||+|+..|+.++|++|+++|+    +++..+..|.||||+|+..|+.++|++|+++|+|++.+|..|+||||+|++
T Consensus       152 g~TpL~~A~~~g~~~~v~~Ll~~ga----dvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          152 GNTPLIYACSGGHHELVALLLQHGA----SINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             CCCHHHHHHHTTCGGGHHHHHHTTC----CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCC----CCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence            9999999999999999999999999    556678899999999999999999999999999999999999999999998


Q ss_pred             hCh-HHHHHhhCCCCC
Q 012618          241 YKH-QACAALLNPSSA  255 (460)
Q Consensus       241 ~~~-~~i~~~Ll~~ga  255 (460)
                      +++ .+++++|...++
T Consensus       228 ~~~i~~lL~~l~~~~~  243 (269)
T 4b93_B          228 NSKIMELLQVVPSCVA  243 (269)
T ss_dssp             TCHHHHHTTC------
T ss_pred             CCcHHHHHHHHHHhch
Confidence            776 344555544444

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.2e-39  Score=298.25  Aligned_cols=218  Identities=25%  Similarity=0.301  Sum_probs=198.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCC--CCCcc-CCCCCCcHHH
Q 012618           11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY--TNTDA-LNRYKQTPLM   87 (460)
Q Consensus        11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~--~~~~~-~~~~g~tpL~   87 (460)
                      |.||||+|+..|+.++|++|++.++++... .+..|.||||+|+..|+.+++++|++.   +  .+++. .+..|.||||
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~~~g~t~L~   77 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSK---MENVNLDDYPDDSGWTPFH   77 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHT---CTTCCGGGCCCTTSCCHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCcccccc-CCCCCCCHHHHHHHcCCHHHHHHHHhc---cccccccccCCCCCCCHHH
Confidence            589999999999999999999999887553 357899999999999999999999999   7  55655 7889999999


Q ss_pred             HHHHcCCHHHHHHHHHcC--CccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHH
Q 012618           88 VAAMNGKLSCVKKLIESG--AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL  165 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L  165 (460)
                      +|+..|+.+++++|++.|  +++ +..+..|.||||+|+..|+.+++++|++.+++            ++.+|..|.|||
T Consensus        78 ~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L  144 (228)
T 2dzn_A           78 IACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------------VRIKDKFNQIPL  144 (228)
T ss_dssp             HHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------SCCCCTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC------------ccccCCCCCCHH
Confidence            999999999999999998  666 77788999999999999999999999999988            899999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcC-CccccCCCCCCCCCChHHHHHHhcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHhCh
Q 012618          166 HLAARQGWSECVHTLLDNG-ALACSSTGGNGYPGSTPLHFAARGGSLECIRELL-AWGADRVQPDAFGRIPYAIALKYKH  243 (460)
Q Consensus       166 ~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~G~tpL~~A~~~~~  243 (460)
                      |+|+..|+.+++++|+++| +    +.+..|..|+||||+|+..|+.+++++|+ ++|++++.+|..|+|||++|+..  
T Consensus       145 ~~A~~~~~~~~v~~Ll~~g~~----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~--  218 (228)
T 2dzn_A          145 HRAASVGSLKLIELLCGLGKS----AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE--  218 (228)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCC----CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST--
T ss_pred             HHHHHcCCHHHHHHHHhcCcc----cccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH--
Confidence            9999999999999999999 7    56677889999999999999999999999 89999999999999999999765  


Q ss_pred             HHHHHhhCC
Q 012618          244 QACAALLNP  252 (460)
Q Consensus       244 ~~i~~~Ll~  252 (460)
                       +++++|++
T Consensus       219 -~~~~~l~~  226 (228)
T 2dzn_A          219 -QVKKFFLN  226 (228)
T ss_dssp             -THHHHHHT
T ss_pred             -HHHHHHHh
Confidence             45555544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-40  Score=331.49  Aligned_cols=260  Identities=18%  Similarity=0.218  Sum_probs=225.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHH--------hccCCCCCCccCC
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLL--------DQFFLYTNTDALN   79 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~~~   79 (460)
                      +..|.|+||+|+..|+ +++++|+..+.+.  . ++..|.||||+|+..|+.+++++|+        +.   |+++|..|
T Consensus        91 ~~~g~t~L~~Aa~~~~-~~~~~L~~~~~n~--~-d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~---ga~vn~~d  163 (373)
T 2fo1_E           91 EPESPIKLHTEAAGSY-AITEPITRESVNI--I-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA---GADVNAMD  163 (373)
T ss_dssp             ---CCCHHHHHHHSSS-CCCSCCSTTTTTT--C-CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT---CCCTTCCC
T ss_pred             CCCCccHHHHHhcCCc-hHHHHhccccccc--c-CCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc---CCCCcCCC
Confidence            5678999999999554 7888887643332  2 2257899999999999998887776        67   99999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhc---CCCCCcccCCCcccccc
Q 012618           80 RYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAA---RTSPVANTWGFSRFVNI  156 (460)
Q Consensus        80 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~---~~~~~~~~~~~~~~v~~  156 (460)
                      ..|.||||+|+..|+.++|++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+   .+            ++.
T Consensus       164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------------~~~  230 (373)
T 2fo1_E          164 CDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD------------IEE  230 (373)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT------------TSC
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC------------hhh
Confidence            99999999999999999999999999998 777889999999999999999999999887   45            788


Q ss_pred             CCCCCCCHHHHHHHcC---CHHHHHHHHHcCCccccC----CCCCCCCCChHHHHHHhcCCHHHHHHHHHcC-CCCCCCC
Q 012618          157 RDESGATPLHLAARQG---WSECVHTLLDNGALACSS----TGGNGYPGSTPLHFAARGGSLECIRELLAWG-ADRVQPD  228 (460)
Q Consensus       157 ~d~~g~t~L~~A~~~g---~~~~v~~Ll~~ga~~~~~----~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d  228 (460)
                      .|..|.||||+|+..+   +.+++++|+++|++++..    .+..|..|.||||+|+..|+.++|++|+++| ++++.+|
T Consensus       231 ~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d  310 (373)
T 2fo1_E          231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD  310 (373)
T ss_dssp             CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCC
T ss_pred             cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcC
Confidence            9999999999999998   899999999999976542    2346778999999999999999999999886 9999999


Q ss_pred             CCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 012618          229 AFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNET  297 (460)
Q Consensus       229 ~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~  297 (460)
                      ..|+||||+|+..|+.+++++|+++|+++..          .+..++++|+.|+..++.+.++.|++..
T Consensus       311 ~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~----------~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          311 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEA----------VDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC----------CCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccC----------CCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999999999996654          4556789999999999999999988643

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8.3e-40  Score=325.79  Aligned_cols=234  Identities=19%  Similarity=0.217  Sum_probs=210.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHH--------HcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC
Q 012618            9 ERSESALFVAVENGDLQMIEAMV--------EADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR   80 (460)
Q Consensus         9 ~~g~t~L~~Aa~~g~~~~vk~Ll--------~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   80 (460)
                      ..|.||||+|+..|+.++|++|+        +.|++++..  +..|.||||+|+..|+.++|++|++.   |++++..+.
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~---ga~~~~~~~  197 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKA---GADPTIYNK  197 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCT
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHC---CCCCcccCC
Confidence            57999999999999998888876        789888554  56899999999999999999999999   999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC---CccccCCCCCCChHHHHHHHcC---CHHHHHHHHHhcCCCCCcccCCCcccc
Q 012618           81 YKQTPLMVAAMNGKLSCVKKLIESG---AFILNFDSLQGRTCLHYAAYYG---HSDCLQALLTAARTSPVANTWGFSRFV  154 (460)
Q Consensus        81 ~g~tpL~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~~~~v  154 (460)
                      .|.||||+|+..|+.+++++|++.+   +++ +..+..|.||||+|+..+   +.+++++|++.+++......    ...
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~----~~~  272 (373)
T 2fo1_E          198 SERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA----ARK  272 (373)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG----GGT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc----ccc
Confidence            9999999999999999999999987   565 777889999999999998   89999999999988432110    113


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 012618          155 NIRDESGATPLHLAARQGWSECVHTLLDNG-ALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRI  233 (460)
Q Consensus       155 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~t  233 (460)
                      +..|..|.||||+|+..|+.++|++|++++ +    +.+..|..|.||||+|+..|+.++|++|+++|++++.+|..|+|
T Consensus       273 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t  348 (373)
T 2fo1_E          273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS----NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHT  348 (373)
T ss_dssp             SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCC
T ss_pred             CcccccCCCHHHHHHHhCCHHHHHHHHHhcCC----CccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCC
Confidence            447889999999999999999999999886 7    66778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhChHHHHHhhCCCCCC
Q 012618          234 PYAIALKYKHQACAALLNPSSAE  256 (460)
Q Consensus       234 pL~~A~~~~~~~i~~~Ll~~ga~  256 (460)
                      ||++|+.+++.+++++|++++++
T Consensus       349 ~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          349 ARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHHHHHcCCHHHHHHHHhcCcc
Confidence            99999999999999999999874

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-39  Score=298.73  Aligned_cols=217  Identities=28%  Similarity=0.321  Sum_probs=201.2

Q ss_pred             cCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHH
Q 012618           21 NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKK  100 (460)
Q Consensus        21 ~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  100 (460)
                      .|+.+++++|+++|++++... +.+|.||||+|+..|+.+++++|++.   +++++..+..|.||||+|+..|+.+++++
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~   76 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEA---SADANIQDNMGRTPLHAAVSADAQGVFQI   76 (223)
T ss_dssp             ----CCEETTEETTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CCcHHHHHHHHHcCCCccccc-CCCCCchHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            378899999999999986543 46899999999999999999999999   99999999999999999999999999999


Q ss_pred             HHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q 012618          101 LIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTL  180 (460)
Q Consensus       101 Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~L  180 (460)
                      |++.++...+..+..|.||||+|+..|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|
T Consensus        77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~L  144 (223)
T 2f8y_A           77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD------------VNAVDDLGKSALHWAAAVNNVDAAVVL  144 (223)
T ss_dssp             HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC------------CcCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            99999865588889999999999999999999999999988            889999999999999999999999999


Q ss_pred             HHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCC
Q 012618          181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP  257 (460)
Q Consensus       181 l~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~  257 (460)
                      +++|+    +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|+++|+..
T Consensus       145 l~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          145 LKNGA----NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             HHTTC----CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             HHcCC----CCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            99999    55667889999999999999999999999999999999999999999999999999999999999854

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.1e-38  Score=310.90  Aligned_cols=234  Identities=23%  Similarity=0.225  Sum_probs=204.7

Q ss_pred             CCccccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-------------------------------cCCCCCcc
Q 012618            2 GQRMSCR--ERSESALFVAVENGDLQMIEAMVEADPTVLGM-------------------------------TSGYGKQS   48 (460)
Q Consensus         2 g~~~~~~--~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~-------------------------------~~~~~g~t   48 (460)
                      |.+++..  +.|.||||+|+..|+.++|++||++|++++..                               ..+..|.|
T Consensus        48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t  127 (337)
T 4g8k_A           48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFT  127 (337)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCB
T ss_pred             CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCC
Confidence            5666643  35899999999999999999999999876432                               23467899


Q ss_pred             HHHHHHHcCcHHHHHHHHhccCCCCCCccC----------CCCCCcHHHHHHHcCCHHHHHHHHH-cCCccccCCCCCCC
Q 012618           49 ALHLAAAYGQIEVLSMLLDQFFLYTNTDAL----------NRYKQTPLMVAAMNGKLSCVKKLIE-SGAFILNFDSLQGR  117 (460)
Q Consensus        49 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~----------~~~g~tpL~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~  117 (460)
                      |||+|+..|+.+++++|+++   |++++..          +..|.||||+|+..|+.++|++||+ .|+++ +..+..|+
T Consensus       128 ~l~~A~~~~~~~~~~~ll~~---ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~  203 (337)
T 4g8k_A          128 AFMEAAVYGKVKALKFLYKR---GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGR  203 (337)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT---TCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSC
T ss_pred             HHHHHHHcCcHHHHHHHHHc---CCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCC
Confidence            99999999999999999999   8877653          4568999999999999999999996 58887 78888999


Q ss_pred             hHHHHHHHcCC----HHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCccccCCC
Q 012618          118 TCLHYAAYYGH----SDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN-GALACSSTG  192 (460)
Q Consensus       118 t~L~~A~~~g~----~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~  192 (460)
                      |+|++++..+.    ..++++|++.|++            +|.+|..|.||||+|+..|+.+++++|++. |+    +++
T Consensus       204 t~l~~~~~~~~~~~~~~i~~lLl~~gad------------~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~----~vn  267 (337)
T 4g8k_A          204 NALIHALLSSDDSDVEAITHLLLDHGAD------------VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI----EIN  267 (337)
T ss_dssp             CHHHHHHHHSCTTTHHHHHHHHHHTTCC------------TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTC----CTT
T ss_pred             cHHHHHHHHcCcccHHHHHHHHHHCCCC------------CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCC----ccc
Confidence            99999887654    4688999999998            899999999999999999999999999985 67    567


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618          193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVW  260 (460)
Q Consensus       193 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~  260 (460)
                      .+|..|+||||+|++.|+.++|++||++|+|+|..     +|||+|+.+++.+++++|+++||++++.
T Consensus       268 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          268 DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            77889999999999999999999999999999764     6999999999999999999999998764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=296.06  Aligned_cols=230  Identities=25%  Similarity=0.288  Sum_probs=208.6

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCC-CCCCc
Q 012618            6 SCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALN-RYKQT   84 (460)
Q Consensus         6 ~~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-~~g~t   84 (460)
                      ..++.|.++|+.|++.|+.+++++|++.|.+++..  +..|.||||+|+..|+.+++++|++.   +.+++..+ ..|.|
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~~~t   78 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP--DKENVTLLHWAAINNRIDLVKYYISK---GAIVDQLGGDLNST   78 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCBTTTTBC
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHhCCHHHHHHHHHc---CCcchhhcCCcCCC
Confidence            34678899999999999999999999999988543  46799999999999999999999999   88887555 44999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618           85 PLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP  164 (460)
Q Consensus        85 pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~  164 (460)
                      |||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+.+            ++.++..|.||
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~------------~~~~~~~g~t~  145 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD------------VDMMDQNGMTP  145 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCH
T ss_pred             hhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC------------ccccCCCCCcH
Confidence            999999999999999999999988 77788999999999999999999999999887            78999999999


Q ss_pred             HHHHHHcCC-HHHHHHHHHcCCccccCCCCCCC-CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 012618          165 LHLAARQGW-SECVHTLLDNGALACSSTGGNGY-PGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK  242 (460)
Q Consensus       165 L~~A~~~g~-~~~v~~Ll~~ga~~~~~~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~  242 (460)
                      ||+|+..+. .+++++|++.|+++    +..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+
T Consensus       146 l~~a~~~~~~~~~~~~L~~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          146 LMWAAYRTHSVDPTRLLLTFNVSV----NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             HHHHHHHCCSSTTHHHHHHTTCCT----TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             HHHHHHhCChHHHHHHHHhcCCCc----chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            999997766 89999999999944    44454 7999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhCCCCCCC
Q 012618          243 HQACAALLNPSSAEP  257 (460)
Q Consensus       243 ~~~i~~~Ll~~ga~~  257 (460)
                      +.+++++|++++++.
T Consensus       222 ~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          222 NVWMINHLQEARQAK  236 (240)
T ss_dssp             CHHHHHHHHHHC---
T ss_pred             cHHHHHHHHHhhhcc
Confidence            999999999988754

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.2e-39  Score=301.98  Aligned_cols=228  Identities=23%  Similarity=0.228  Sum_probs=179.5

Q ss_pred             CCCCCccHHHHHHHcC-------------cHHHHHHHHhccCCCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCc
Q 012618           42 SGYGKQSALHLAAAYG-------------QIEVLSMLLDQFFLYTNTDA-LNRYKQTPLMVAAMNGKLSCVKKLIESGAF  107 (460)
Q Consensus        42 ~~~~g~t~Lh~A~~~g-------------~~~iv~~Ll~~~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~  107 (460)
                      .+.+|.||||+|+..|             +.+++++|++.   +++++. .|..|.||||+|+..|+.+++++|++.|++
T Consensus         6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~---g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ---GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc---cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3568999999999987             89999999999   888865 589999999999999999999999999999


Q ss_pred             cccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc
Q 012618          108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALA  187 (460)
Q Consensus       108 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~  187 (460)
                      + +..+..|+||||+|+..|+.+++++|++.+...           ++.++..|.||||+|+..|+.+++++|+++|+  
T Consensus        83 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--  148 (253)
T 1yyh_A           83 A-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATD-----------LDARMHDGTTPLILAARLAVEGMLEDLINSHA--  148 (253)
T ss_dssp             T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC-----------TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC--
T ss_pred             C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-----------ccccCCCCCcHHHHHHHcChHHHHHHHHHcCC--
Confidence            8 777889999999999999999999999998732           78899999999999999999999999999999  


Q ss_pred             ccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCccccccccc
Q 012618          188 CSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNM  267 (460)
Q Consensus       188 ~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~  267 (460)
                        +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+++..        
T Consensus       149 --~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~--------  218 (253)
T 1yyh_A          149 --DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI--------  218 (253)
T ss_dssp             --CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--------
T ss_pred             --CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc--------
Confidence              5566778899999999999999999999999999999999999999999999999999999999996654        


Q ss_pred             CCCCHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618          268 TDLNPEAKELLEKALMESNEEREKAILNETI  298 (460)
Q Consensus       268 ~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~  298 (460)
                        .+..++++|+.|...++.+.++.+.....
T Consensus       219 --~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          219 --TDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             --CCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             --cccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence              46678899999999999999999876544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=8.9e-38  Score=306.75  Aligned_cols=223  Identities=26%  Similarity=0.342  Sum_probs=203.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM   87 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~   87 (460)
                      +..|.||||+|+..|+.++|++|+++|++++..  +..|.||||+|+..|+.+++++|+++   |++++..|..|.||||
T Consensus        55 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~---g~~~~~~~~~g~t~L~  129 (351)
T 3utm_A           55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKH---GACVNAMDLWQFTPLH  129 (351)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHH
Confidence            567999999999999999999999999998554  56899999999999999999999999   9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCcccc-----------------------------------------------------CCCC
Q 012618           88 VAAMNGKLSCVKKLIESGAFILN-----------------------------------------------------FDSL  114 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g~~~~~-----------------------------------------------------~~~~  114 (460)
                      +|+..|+.+++++|+++|+++..                                                     ..+.
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  209 (351)
T 3utm_A          130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ  209 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCC
Confidence            99999999999999999988622                                                     1235


Q ss_pred             CCChHHHHHHHc---CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCC
Q 012618          115 QGRTCLHYAAYY---GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSST  191 (460)
Q Consensus       115 ~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  191 (460)
                      .|.||||+|+..   +..+++++|++.+.+            ++.+|..|.||||+|+..|+.+++++|+++|+    ++
T Consensus       210 ~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~  273 (351)
T 3utm_A          210 SHETALHCAVASLHPKRKQVAELLLRKGAN------------VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA----KM  273 (351)
T ss_dssp             TCCCHHHHHHHCCSTTHHHHHHHHHHTTCC------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CT
T ss_pred             CCCCHHHHHHHHhCccHHHHHHHHHHcCCC------------cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CC
Confidence            678999999999   558999999999988            89999999999999999999999999999999    56


Q ss_pred             CCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618          192 GGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA  255 (460)
Q Consensus       192 ~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga  255 (460)
                      +..|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||+++|    ..+++++|.+.+.
T Consensus       274 n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~  333 (351)
T 3utm_A          274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTP  333 (351)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC--
T ss_pred             CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhccc
Confidence            67788999999999999999999999999999999999999999998    5678888877654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=6.1e-38  Score=291.53  Aligned_cols=226  Identities=30%  Similarity=0.395  Sum_probs=206.5

Q ss_pred             ccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChH
Q 012618           40 MTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTC  119 (460)
Q Consensus        40 ~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~  119 (460)
                      ...+.+|.||||+|+..|+.+++++|+++   |++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||
T Consensus         5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~   80 (237)
T 3b7b_A            5 KMEHQNKRSPLHAAAEAGHVDICHMLVQA---GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTC   80 (237)
T ss_dssp             CCSSCCSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCH
T ss_pred             ccccCCCCCHHHHHHHcCcHHHHHHHHHc---CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcH
Confidence            34567899999999999999999999999   9999999999999999999999999999999999987 7778899999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCC
Q 012618          120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGS  199 (460)
Q Consensus       120 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~  199 (460)
                      ||+|+..|+.+++++|++.+...           ++..+..|.||||+|+..++.+++++|+++|+    +.+..+..|.
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~  145 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMD-----------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS----DINIRDNEEN  145 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCC-----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCC-----------cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCccCCCCC
Confidence            99999999999999999998432           78899999999999999999999999999999    5566788999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHH
Q 012618          200 TPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLE  279 (460)
Q Consensus       200 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~  279 (460)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+++..          .+..|+++|+
T Consensus       146 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~----------~d~~g~t~l~  215 (237)
T 3b7b_A          146 ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL----------KNKEGETPLQ  215 (237)
T ss_dssp             CHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC----------CCTTSCCHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCc----------cCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999997654          4667889999


Q ss_pred             HHHhhhhHHHHHHhh
Q 012618          280 KALMESNEEREKAIL  294 (460)
Q Consensus       280 ~a~~~~~~~~~~~ll  294 (460)
                      .|....+......++
T Consensus       216 ~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          216 CASLNSQVWSALQMS  230 (237)
T ss_dssp             HSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998888765554444

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.5e-38  Score=301.51  Aligned_cols=226  Identities=28%  Similarity=0.274  Sum_probs=188.0

Q ss_pred             CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCC---CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCh
Q 012618           42 SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN---TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRT  118 (460)
Q Consensus        42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t  118 (460)
                      .+.+|.||||+|+..|+.++|++|++.   +++   ++..+..|+||||+|+..|+.+++++|+++|+++ +..+..|+|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t   80 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGF---SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT   80 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH---HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhc---CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            356899999999999999999999998   776   8889999999999999999999999999999998 777889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCCcccC-----------------------------------CCccccccCCCCCCC
Q 012618          119 CLHYAAYYGHSDCLQALLTAARTSPVANTW-----------------------------------GFSRFVNIRDESGAT  163 (460)
Q Consensus       119 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~-----------------------------------~~~~~v~~~d~~g~t  163 (460)
                      |||+|+..|+.+++++|++.++........                                   .....++.++..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            999999999999999999987653221110                                   112337888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCC-CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 012618          164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGY-PGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK  242 (460)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~  242 (460)
                      |||+|+..|+.+++++|+++|+++    +..+. .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..+
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~----~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~  236 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADL----NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP  236 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCT----TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC----CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence            999999999999999999999944    44443 4999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh
Q 012618          243 HQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES  285 (460)
Q Consensus       243 ~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~  285 (460)
                      +.+++++|+++|+++.          ..+..+.++|+.+....
T Consensus       237 ~~~~v~~Ll~~ga~~~----------~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          237 NPILARLLRAHGAPEP----------EDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CHHHHHHHHHTTCCCC----------CCC--------------
T ss_pred             CcHHHHHHHHcCCCcC----------cCCCcccccccccCCcc
Confidence            9999999999999655          46778889988776443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.5e-38  Score=294.57  Aligned_cols=229  Identities=25%  Similarity=0.256  Sum_probs=203.1

Q ss_pred             CCCCCccHHHHHHHcCcHHHHHHHHh----ccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCC
Q 012618           42 SGYGKQSALHLAAAYGQIEVLSMLLD----QFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGR  117 (460)
Q Consensus        42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~  117 (460)
                      .+.+|.||||+|+..|+.+++++|++    .   +.+++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~   80 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQG---GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQ   80 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHT---TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhc---CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCC
Confidence            35689999999999999999999997    5   8899999999999999999999999999999999988 67788999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCC-C
Q 012618          118 TCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNG-Y  196 (460)
Q Consensus       118 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d-~  196 (460)
                      ||||+|+..|+.+++++|++.+.....        .++..+..|.||||+|+..|+.+++++|+++|++    .+..+ .
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~  148 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTL--------DLEARNYDGLTALHVAVNTECQETVQLLLERGAD----IDAVDIK  148 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccc--------cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC----ccccccc
Confidence            999999999999999999999873211        1788999999999999999999999999999994    44455 6


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHH
Q 012618          197 PGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKE  276 (460)
Q Consensus       197 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  276 (460)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+++..          .+..+++
T Consensus       149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~t  218 (241)
T 1k1a_A          149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL----------KNCHNDT  218 (241)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC----------CCTTSCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC----------cCCCCCC
Confidence            799999999999999999999999999999999999999999999999999999999997654          4556778


Q ss_pred             HHHHHHhhhhHHHHHHhhhc
Q 012618          277 LLEKALMESNEEREKAILNE  296 (460)
Q Consensus       277 ~L~~a~~~~~~~~~~~ll~~  296 (460)
                      +|+.|...+..+..+.++..
T Consensus       219 pl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          219 PLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             TTTTCSSHHHHHHHTC----
T ss_pred             HHHHHHhcCcHHHHhhhccC
Confidence            88888888888888777654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.2e-38  Score=303.05  Aligned_cols=233  Identities=23%  Similarity=0.231  Sum_probs=199.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM   87 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~   87 (460)
                      +..|.|+|+.|+..|+.++|++|+++|++++..  +..|.||||+|+..|+.++|++|++.   |++++..|..|.||||
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~~~~g~tpL~  111 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVEN---GANINQPDNEGWIPLH  111 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCcHHH
Confidence            346789999999999999999999999998554  46799999999999999999999999   9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccC---------------CCcc
Q 012618           88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTW---------------GFSR  152 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~---------------~~~~  152 (460)
                      +|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|+............               ....
T Consensus       112 ~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  190 (299)
T 1s70_B          112 AAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI  190 (299)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence            999999999999999999998 777889999999999999999999888754321000000               0000


Q ss_pred             ccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012618          153 FVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR  232 (460)
Q Consensus       153 ~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~  232 (460)
                      .....+..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus       191 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~  266 (299)
T 1s70_B          191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY----DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ  266 (299)
T ss_dssp             CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC----CCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            123456789999999999999999999999999    5567788999999999999999999999999999999999999


Q ss_pred             CHHHHHHHhChHHHHHhh
Q 012618          233 IPYAIALKYKHQACAALL  250 (460)
Q Consensus       233 tpL~~A~~~~~~~i~~~L  250 (460)
                      |||++|.+.....+.+++
T Consensus       267 t~l~~A~~~~~~~l~~l~  284 (299)
T 1s70_B          267 TAFDVADEDILGYLEELQ  284 (299)
T ss_dssp             CTTTSCCSGGGHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999765444444444

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.5e-38  Score=304.89  Aligned_cols=194  Identities=19%  Similarity=0.119  Sum_probs=97.2

Q ss_pred             CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618           44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  123 (460)
                      .+|.||||+|+..|+.++|++|++.   |++++..+  |+||||+|+..|+.+++++|+++|+++ +..+..|+||||+|
T Consensus        29 ~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A  102 (285)
T 3kea_A           29 VHGHSASYYAIADNNVRLVCTLLNA---GALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYA  102 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHT---TGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHH
Confidence            3445555555555555555555554   44444442  455555555555555555555555544 33444555555555


Q ss_pred             HHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC-CCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHH
Q 012618          124 AYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG-ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL  202 (460)
Q Consensus       124 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpL  202 (460)
                      +..|+.+++++|++.+++            ++.++..| .||||+|+..|+.+++++|+++|++...     ...|.|||
T Consensus       103 ~~~g~~~~v~~Ll~~ga~------------~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----~~~g~t~L  165 (285)
T 3kea_A          103 VDSGNMQTVKLFVKKNWR------------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-----LAILLSCI  165 (285)
T ss_dssp             HHTTCHHHHHHHHHHCGG------------GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC-----CSTHHHHH
T ss_pred             HHcCCHHHHHHHHhcCCC------------CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc-----ccCCccHH
Confidence            555555555555555444            44455555 4555555555555555555555542210     01345555


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618          203 HFAARGGSLECIRELLAWGADRVQPDAFGRIP-YAIALKYKHQACAALLNPSSAEPLVW  260 (460)
Q Consensus       203 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tp-L~~A~~~~~~~i~~~Ll~~ga~~~~~  260 (460)
                      |+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..++.+++++|+++|+++...
T Consensus       166 ~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~  224 (285)
T 3kea_A          166 HITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA  224 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTT
T ss_pred             HHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence            55555555555555555555555555555554 55555555555555555555554443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.9e-37  Score=297.33  Aligned_cols=219  Identities=16%  Similarity=0.207  Sum_probs=200.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM   87 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~   87 (460)
                      +..|.||||+|+..|+.++|++|+++|++++..    +|.||||+|+..|+.+++++|+++   |++++.+|..|.||||
T Consensus        28 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFS---GLDDSQFDDKGNTALY  100 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHT---TCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCcHHH
Confidence            568999999999999999999999999988554    589999999999999999999999   9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCccccCCCCCC-ChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCC-CCCCHH
Q 012618           88 VAAMNGKLSCVKKLIESGAFILNFDSLQG-RTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE-SGATPL  165 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~-~g~t~L  165 (460)
                      +|+..|+.+++++|++.|+++ +..+..| .||||+|+..|+.+++++|++.+++.              .+. .|.|||
T Consensus       101 ~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~--------------~~~~~g~t~L  165 (285)
T 3kea_A          101 YAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--------------FDLAILLSCI  165 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT--------------CCCSTHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc--------------ccccCCccHH
Confidence            999999999999999999998 6777788 79999999999999999999998762              222 899999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChH-HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChH
Q 012618          166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP-LHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ  244 (460)
Q Consensus       166 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp-Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~  244 (460)
                      |+|+..|+.+++++|+++|+    +.+..|..|.|| ||+|+..|+.+++++|+++|++++..|.       .|+..++.
T Consensus       166 ~~A~~~g~~~~v~~Ll~~ga----d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~  234 (285)
T 3kea_A          166 HITIKNGHVDMMILLLDYMT----STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDA  234 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH----HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCH
T ss_pred             HHHHHcChHHHHHHHHHcCC----CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCH
Confidence            99999999999999999999    556678889998 9999999999999999999999999883       56779999


Q ss_pred             HHHHhhCCCCCCCCc
Q 012618          245 ACAALLNPSSAEPLV  259 (460)
Q Consensus       245 ~i~~~Ll~~ga~~~~  259 (460)
                      +++++|+++|++...
T Consensus       235 ~iv~~Ll~~g~~~~~  249 (285)
T 3kea_A          235 EIAKMIIEKHVEYKS  249 (285)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCC
Confidence            999999999986543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.5e-37  Score=282.65  Aligned_cols=224  Identities=25%  Similarity=0.238  Sum_probs=204.6

Q ss_pred             CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618           44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  123 (460)
                      ..+.+|||.|+..|+.+++++|++..  ...++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   80 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILAD--KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA   80 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHC--GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhc--hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence            34679999999999999999999872  3346778999999999999999999999999999988 77788999999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHH
Q 012618          124 AYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH  203 (460)
Q Consensus       124 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh  203 (460)
                      +..|+.+++++|++.+.+            ++.+|..|.||||+|+..++.+++++|+++|+    +.+..+..|.||||
T Consensus        81 ~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~  144 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAH------------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA----NPDAKDHYDATAMH  144 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHH
T ss_pred             HHcCHHHHHHHHHHcCCC------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCcHHH
Confidence            999999999999999988            78899999999999999999999999999999    55667888999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHh
Q 012618          204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALM  283 (460)
Q Consensus       204 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~  283 (460)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+++..          .+..++++|+.|..
T Consensus       145 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~t~l~~A~~  214 (231)
T 3aji_A          145 RAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI----------ENKEEKTPLQVAKG  214 (231)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC----------CCTTSCCHHHHSCH
T ss_pred             HHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC----------CCCCCCCHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999996653          45678899999988


Q ss_pred             hhhHHHHHHhhhc
Q 012618          284 ESNEEREKAILNE  296 (460)
Q Consensus       284 ~~~~~~~~~ll~~  296 (460)
                      ..+.+..+.+++.
T Consensus       215 ~~~~~i~~lL~~~  227 (231)
T 3aji_A          215 GLGLILKRLAEGE  227 (231)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccc
Confidence            8888887777653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.3e-37  Score=306.78  Aligned_cols=237  Identities=19%  Similarity=0.162  Sum_probs=207.5

Q ss_pred             cCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHH
Q 012618           41 TSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL  120 (460)
Q Consensus        41 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L  120 (460)
                      ..+.+|.||||+|+..|+.++|++||+.   |++++..|..|.||||+|+..|+.++|++|++.|+++   .+..|.|||
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L   88 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIET---GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPI   88 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHH
Confidence            3456789999999999999999999999   9999999999999999999999999999999999955   334799999


Q ss_pred             HHHHHcCCHHHHHHHHHh----cCCCCCcccC-----CCccccccCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCcccc
Q 012618          121 HYAAYYGHSDCLQALLTA----ARTSPVANTW-----GFSRFVNIRDESGATPLHLAARQG--WSECVHTLLDNGALACS  189 (460)
Q Consensus       121 ~~A~~~g~~~iv~~Ll~~----~~~~~~~~~~-----~~~~~v~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~~~  189 (460)
                      |+|+..|+.+++++|++.    +.+.......     -....++..|..|.||||+|+..|  +.++|++|+++|+    
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga----  164 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA----  164 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC----
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC----
Confidence            999999999999999998    5542110000     000113448889999999999999  9999999999999    


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccc
Q 012618          190 STGGNGYPGSTPLHFAARGGSLECIRELLAWGAD-----RVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQL  264 (460)
Q Consensus       190 ~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-----~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~  264 (460)
                      +++..|..|.||||+|+..|+.++|++|+++|++     ++..|..|+||||+|+..++.+++++|+++|+++..     
T Consensus       165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~-----  239 (364)
T 3ljn_A          165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM-----  239 (364)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTC-----
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-----
Confidence            5567788999999999999999999999999999     999999999999999999999999999999997654     


Q ss_pred             cccCCCCHHHHHHHHHHHhhhhHHHHHHhhhcc
Q 012618          265 RNMTDLNPEAKELLEKALMESNEEREKAILNET  297 (460)
Q Consensus       265 ~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~  297 (460)
                           .+..+.++|+.|+..++.+.++.|++..
T Consensus       240 -----~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  267 (364)
T 3ljn_A          240 -----EDNEHTVPLYLSVRAAMVLLTKELLQKT  267 (364)
T ss_dssp             -----CCTTSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred             -----CCCCCCCHHHHHHHhChHHHHHHHHHcC
Confidence                 4567889999999999999999999764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-36  Score=281.05  Aligned_cols=210  Identities=25%  Similarity=0.232  Sum_probs=188.1

Q ss_pred             CccHHHHHHHcCcHHHHHHHHhccCCCCCCc-cCCCCCCcHHHHHHHcCCHHHHHHHHHcC--CccccCCCCCCChHHHH
Q 012618           46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTD-ALNRYKQTPLMVAAMNGKLSCVKKLIESG--AFILNFDSLQGRTCLHY  122 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~  122 (460)
                      |+||||+|+..|+.++|++|++.   +.++. ..+..|.||||+|+..|+.+++++|++.|  .++....+..|+||||+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~   78 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHS---KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI   78 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHH---CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhc---CccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHH
Confidence            57999999999999999999998   66554 48899999999999999999999999999  66644477899999999


Q ss_pred             HHHcCCHHHHHHHHHhc--CCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCCh
Q 012618          123 AAYYGHSDCLQALLTAA--RTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGST  200 (460)
Q Consensus       123 A~~~g~~~iv~~Ll~~~--~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~T  200 (460)
                      |+..|+.+++++|++.+  .+            ++..+..|.||||+|+..|+.+++++|+++|+    +.+..+..|.|
T Consensus        79 A~~~~~~~~~~~Ll~~g~~~~------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t  142 (228)
T 2dzn_A           79 ACSVGNLEVVKSLYDRPLKPD------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGA----SVRIKDKFNQI  142 (228)
T ss_dssp             HHHHCCHHHHHHHHSSSSCCC------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCC
T ss_pred             HHHcCCHHHHHHHHhCCCCcc------------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCC----CccccCCCCCC
Confidence            99999999999999998  44            78899999999999999999999999999999    55677889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhChHHHHHhhC-CCCCCCCcccccccccCCCCHHHHHHH
Q 012618          201 PLHFAARGGSLECIRELLAWG-ADRVQPDAFGRIPYAIALKYKHQACAALLN-PSSAEPLVWPLQLRNMTDLNPEAKELL  278 (460)
Q Consensus       201 pLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~~L  278 (460)
                      |||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..++.+++++|+ ++|+++...          +..++++|
T Consensus       143 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~----------~~~g~t~l  212 (228)
T 2dzn_A          143 PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV----------DNKGAKAE  212 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCB----------CTTSCBGG
T ss_pred             HHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCcc----------CCCCCcHH
Confidence            999999999999999999999 999999999999999999999999999999 899977653          44555666


Q ss_pred             HHHHhh
Q 012618          279 EKALME  284 (460)
Q Consensus       279 ~~a~~~  284 (460)
                      +.|...
T Consensus       213 ~~A~~~  218 (228)
T 2dzn_A          213 DVALNE  218 (228)
T ss_dssp             GGCSST
T ss_pred             HHHHHH
Confidence            666443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1e-36  Score=293.28  Aligned_cols=244  Identities=20%  Similarity=0.222  Sum_probs=209.3

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCccccc-------CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHH
Q 012618           16 FVAVENGDLQMIEAMVEADPTVLGMT-------SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMV   88 (460)
Q Consensus        16 ~~Aa~~g~~~~vk~Ll~~~~~~~~~~-------~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~   88 (460)
                      +.++..+..+.++.++.....+....       .+.+|.||||.|+..|+.++|++|++.   |++++..|..|.||||+
T Consensus         3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~   79 (299)
T 1s70_B            3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER---GADINYANVDGLTALHQ   79 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH---CCCTTCBCTTCCBHHHH
T ss_pred             hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHH
Confidence            35788889999999998766543211       123578999999999999999999999   99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHH
Q 012618           89 AAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA  168 (460)
Q Consensus        89 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A  168 (460)
                      |+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++            ++..+..|.||||+|
T Consensus        80 A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~------------~~~~~~~g~t~l~~A  146 (299)
T 1s70_B           80 ACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH------------VGAVNSEGDTPLDIA  146 (299)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHC
T ss_pred             HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC------------CCCcCCCCCCHHHHH
Confidence            99999999999999999998 77788999999999999999999999999988            788999999999999


Q ss_pred             HHcCCHHHHHHHHHc-CCccc----------------------cCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC
Q 012618          169 ARQGWSECVHTLLDN-GALAC----------------------SSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV  225 (460)
Q Consensus       169 ~~~g~~~~v~~Ll~~-ga~~~----------------------~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  225 (460)
                      +..++.+++++|+.. |.+++                      ......+..|.||||+|+..|+.++|++|+++|++++
T Consensus       147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~  226 (299)
T 1s70_B          147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN  226 (299)
T ss_dssp             CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT
T ss_pred             HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC
Confidence            999999999887753 33221                      1223345679999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhh
Q 012618          226 QPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMES  285 (460)
Q Consensus       226 ~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~  285 (460)
                      .+|..|.||||+|+..++.+++++|+++|+++...          +..++++|+.|....
T Consensus       227 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~----------d~~g~t~l~~A~~~~  276 (299)
T 1s70_B          227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV----------NKVGQTAFDVADEDI  276 (299)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------CTTSCCTTTSCCSGG
T ss_pred             CcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc----------CCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999977653          445556666664433

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.3e-37  Score=287.80  Aligned_cols=210  Identities=24%  Similarity=0.285  Sum_probs=97.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCc--ccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTV--LGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTP   85 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~--~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tp   85 (460)
                      +..|.||||+|+..|+.++|++|++.+...  .....+..|.||||+|+..|+.++|++|++.   |++++..+..|.||
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA---GCDPELRDFRGNTP   81 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC---CCCSCCCCTTCCCH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCH
Confidence            344555555555555555555555444321  0111223445555555555555555555554   55555555555555


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCcc-----ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCC-
Q 012618           86 LMVAAMNGKLSCVKKLIESGAFI-----LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE-  159 (460)
Q Consensus        86 L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~-  159 (460)
                      ||+|+..|+.+++++|++.++++     .+..+..|.||||+|+..|+.+++++|++.+++            ++.++. 
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~  149 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------------VNAQEPC  149 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC------------TTCCCTT
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCCCCCC
Confidence            55555555555555555554321     233344445555555555555555555544444            444443 


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH
Q 012618          160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV--QPDAFGRIPYA  236 (460)
Q Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~tpL~  236 (460)
                      .|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.+++++|+++|++..  .++..|.||++
T Consensus       150 ~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  224 (236)
T 1ikn_D          150 NGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD  224 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTC----CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC----CCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHh
Confidence            44555555555555555555555444    233334444455555555555555555555544433  34444444443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5.3e-35  Score=269.05  Aligned_cols=196  Identities=25%  Similarity=0.260  Sum_probs=183.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCC-CCccCCCCCCcHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYT-NTDALNRYKQTPL   86 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-~~~~~~~~g~tpL   86 (460)
                      +..|.||||+|+..|+.++|++|+++|++++..  +..|.||||+|+..|+.+++++|++.   +. +++..+..|.|||
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~L   96 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTPL   96 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHB---TTSCTTCCCTTCCCHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCcHH
Confidence            578999999999999999999999999988543  56889999999999999999999998   65 8899999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHH
Q 012618           87 MVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLH  166 (460)
Q Consensus        87 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~  166 (460)
                      |+|+..++.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+++            ++.+|..|.||||
T Consensus        97 ~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~  163 (223)
T 2f8y_A           97 ILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN------------KDMQNNREETPLF  163 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTCCCHHH
T ss_pred             HHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC------------CCCcCCCCcCHHH
Confidence            9999999999999999999988 77788999999999999999999999999988            8999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC
Q 012618          167 LAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV  225 (460)
Q Consensus       167 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  225 (460)
                      +|+..|+.+++++|+++|+    +.+..|..|.||||+|++.++.+++++|+++|+...
T Consensus       164 ~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          164 LAAREGSYETAKVLLDHFA----NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             HHHHcCCHHHHHHHHHcCC----CCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            9999999999999999999    556778899999999999999999999999998754

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=7.2e-37  Score=284.51  Aligned_cols=205  Identities=24%  Similarity=0.264  Sum_probs=184.0

Q ss_pred             CCCCccHHHHHHHcCcHHHHHHHHhccC-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHH
Q 012618           43 GYGKQSALHLAAAYGQIEVLSMLLDQFF-LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLH  121 (460)
Q Consensus        43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~-~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  121 (460)
                      +.+|.||||+|+..|+.+++++|++... .+++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~   83 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH   83 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHH
Confidence            5689999999999999999999998721 12478999999999999999999999999999999998 778889999999


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCC-CCCh
Q 012618          122 YAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGY-PGST  200 (460)
Q Consensus       122 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~-~g~T  200 (460)
                      +|+..|+.+++++|++.++.+..      ...++..+..|.||||+|+..|+.+++++|+++|+    +.+..+. .|.|
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~~g~t  153 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHL------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA----DVNAQEPCNGRT  153 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSS------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC----CTTCCCTTTCCC
T ss_pred             HHHHcCCHHHHHHHHhcccchhH------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCC
Confidence            99999999999999999876322      12368889999999999999999999999999999    5555665 8999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCC
Q 012618          201 PLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL  258 (460)
Q Consensus       201 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~  258 (460)
                      |||+|+..|+.++|++|+++|++++.+|..|+|||++|+..++.+++++|+++|+++.
T Consensus       154 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            9999999999999999999999999999999999999999999999999999999776

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.8e-35  Score=265.55  Aligned_cols=192  Identities=24%  Similarity=0.257  Sum_probs=157.9

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618           45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA  124 (460)
Q Consensus        45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  124 (460)
                      .+.||||.|+..|+.++++.|+...  +.+++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDT--TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAG   80 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            4568888888888888888888872  3378888888888888888888888888888888877 667778888888888


Q ss_pred             HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CccccCCCCCCCCCChHHH
Q 012618          125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNG-ALACSSTGGNGYPGSTPLH  203 (460)
Q Consensus       125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~d~~g~TpLh  203 (460)
                      ..|+.+++++|++.+...           ++..+..|.||||+|+..|+.+++++|+++| +    +.+..|..|.||||
T Consensus        81 ~~~~~~~~~~Ll~~~~~~-----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~~g~t~L~  145 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPD-----------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE----DIDFQNDFGYTALI  145 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCC-----------TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCC----CTTCCCTTSCCHHH
T ss_pred             HcCCHHHHHHHHhccCcc-----------cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CcCCCCCCCCCHHH
Confidence            888888888888554432           6778888888888888888888888888888 6    55666778888888


Q ss_pred             HHHhcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCC
Q 012618          204 FAARGGS-----LECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS  254 (460)
Q Consensus       204 ~A~~~g~-----~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~g  254 (460)
                      +|+..++     .+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|
T Consensus       146 ~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            8888887     88888888888888888888888888888888888888888776

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.6e-37  Score=290.95  Aligned_cols=214  Identities=29%  Similarity=0.345  Sum_probs=168.1

Q ss_pred             CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCC--------CccCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCccccCC
Q 012618           42 SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN--------TDALNRYKQTPLMVAAMNGKL-SCVKKLIESGAFILNFD  112 (460)
Q Consensus        42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~--------~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~g~~~~~~~  112 (460)
                      .++.+.++|+.|+..|+.++|++||+.   +.+        ++..+..|.||||+|+..++. .++++|++.|+++ +..
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~---~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~   82 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEW---TEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVT   82 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTC---C----------------------------------------CCCCT-TCC
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHC---CCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCc
Confidence            356678999999999999999999998   543        456778899999999988776 5889999999998 888


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCC
Q 012618          113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTG  192 (460)
Q Consensus       113 ~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  192 (460)
                      |.+|+||||+|+..|+.+++++|++.+++            ++.++..|.||||+|+..++.+++++|+++|+    +++
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~----~~n  146 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGAN------------AGARNADQAVPLHLACQQGHFQVVKCLLDSNA----KPN  146 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCC------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CSC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCC------------cCccCCCCCCccccccccChHHHHHHHHHCCC----CCC
Confidence            89999999999999999999999999988            78899999999999999999999999999999    556


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCH
Q 012618          193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNP  272 (460)
Q Consensus       193 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~  272 (460)
                      .+|..|+||||+|+..|+.++|++|+++|+|+|.+|..|+||||+|+..|+.+++++|+++|+++..          .+.
T Consensus       147 ~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~----------~d~  216 (269)
T 4b93_B          147 KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV----------LNK  216 (269)
T ss_dssp             CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC----------CCT
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC----------cCC
Confidence            7788999999999999999999999999999999999999999999999999999999999997664          455


Q ss_pred             HHHHHHHHHHhhh
Q 012618          273 EAKELLEKALMES  285 (460)
Q Consensus       273 ~~~~~L~~a~~~~  285 (460)
                      .|+|+|+.|....
T Consensus       217 ~G~TpL~~A~~~~  229 (269)
T 4b93_B          217 RQRTAVDCAEQNS  229 (269)
T ss_dssp             TSCCSGGGSCTTC
T ss_pred             CCCCHHHHHHhCC
Confidence            6777888776543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=273.42  Aligned_cols=227  Identities=22%  Similarity=0.204  Sum_probs=209.1

Q ss_pred             CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 012618           43 GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHY  122 (460)
Q Consensus        43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  122 (460)
                      +..|.|+||.|+..|+.+++++|++.   |++++..+..|.||||+|+..|+.+++++|++.|+++....+..|.||||+
T Consensus         6 d~~~~~~l~~A~~~g~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            6 DDYSTWDIVKATQYGIYERCRELVEA---GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             SCGGGCCHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             ccccchHHHHHHHcCChHHHHHHHHc---CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            34678999999999999999999999   999999999999999999999999999999999999877777779999999


Q ss_pred             HHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHH
Q 012618          123 AAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL  202 (460)
Q Consensus       123 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpL  202 (460)
                      |+..|+.+++++|++.+++            ++.++..|.||||+|+..|+.+++++|+++|+    +.+..+..|.|||
T Consensus        83 A~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~g~t~l  146 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGAD------------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ----DVDMMDQNGMTPL  146 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCC------------CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCC----CccccCCCCCcHH
Confidence            9999999999999999988            78899999999999999999999999999999    5567788999999


Q ss_pred             HHHHhcCC-HHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHH
Q 012618          203 HFAARGGS-LECIRELLAWGADRVQPDA-FGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEK  280 (460)
Q Consensus       203 h~A~~~g~-~~~v~~Ll~~gad~~~~d~-~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~  280 (460)
                      |+|+..++ .+++++|++.|++++..+. .|.||||+|+..++.+++++|+++|+++..          .+..+.++|+.
T Consensus       147 ~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~g~t~l~~  216 (240)
T 3eu9_A          147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA----------QNIKGESALDL  216 (240)
T ss_dssp             HHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC----------BCTTSCBHHHH
T ss_pred             HHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC----------cCCCCCCHHHH
Confidence            99996665 8999999999999999997 999999999999999999999999997654          45567899999


Q ss_pred             HHhhhhHHHHHHhhhccc
Q 012618          281 ALMESNEEREKAILNETI  298 (460)
Q Consensus       281 a~~~~~~~~~~~ll~~~~  298 (460)
                      |+..++.+.++.+++...
T Consensus       217 A~~~~~~~~v~~L~~~~~  234 (240)
T 3eu9_A          217 AKQRKNVWMINHLQEARQ  234 (240)
T ss_dssp             HHHTTCHHHHHHHHHHC-
T ss_pred             HHHcCcHHHHHHHHHhhh
Confidence            999999999999987644

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=3.2e-34  Score=259.47  Aligned_cols=193  Identities=21%  Similarity=0.293  Sum_probs=176.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADP-TVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL   86 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~-~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL   86 (460)
                      +..+.|+|+.|+..|+.+.|+.|++.+. +++.  .+.+|.||||+|+..|+.+++++|++.   |++++..+..|.|||
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l   76 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDE--VDTEGNTPLNIAVHNNDIEIAKALIDR---GADINLQNSISDSPY   76 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHH
Confidence            3568899999999999999999999887 5533  346889999999999999999999999   999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhc-CCCCCcccCCCccccccCCCCCCCHH
Q 012618           87 MVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAA-RTSPVANTWGFSRFVNIRDESGATPL  165 (460)
Q Consensus        87 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~~~~~v~~~d~~g~t~L  165 (460)
                      |+|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++.+ .+            ++.+|..|.|||
T Consensus        77 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------~~~~~~~g~t~L  144 (201)
T 3hra_A           77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED------------IDFQNDFGYTAL  144 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC------------TTCCCTTSCCHH
T ss_pred             HHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------cCCCCCCCCCHH
Confidence            99999999999999996655444888889999999999999999999999999 55            899999999999


Q ss_pred             HHHHHcCC-----HHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 012618          166 HLAARQGW-----SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG  221 (460)
Q Consensus       166 ~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g  221 (460)
                      |+|+..+.     .+++++|+++|+    +.+.+|..|.||||+|+..|+.+++++|+++|
T Consensus       145 ~~A~~~~~~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          145 IEAVGLREGNQLYQDIVKLLMENGA----DQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHSSCCSHHHHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHhccchhhHHHHHHHHHHCCC----CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999998     999999999999    55677889999999999999999999999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2e-35  Score=280.99  Aligned_cols=214  Identities=22%  Similarity=0.204  Sum_probs=172.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCcccc--cCCCCCccHHHHHHHc---CcHHHHHHHHhccCCCCCC--
Q 012618            7 CRERSESALFVAVENGDLQMIEAMVEA----DPTVLGM--TSGYGKQSALHLAAAY---GQIEVLSMLLDQFFLYTNT--   75 (460)
Q Consensus         7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~----~~~~~~~--~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~--   75 (460)
                      .+..|.|+||+|+..|+.++|+.|++.    +.+++..  ..+..|.||||+|+..   |+.++|++|++.   |+++  
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~---ga~~~~   85 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV---ARKTDS   85 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH---HHHTTC
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh---hccccc
Confidence            467899999999999999999999974    4444321  2356899999999987   999999999998   5432  


Q ss_pred             ---------ccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCC--------------CCChHHHHHHHcCCHHHH
Q 012618           76 ---------DALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSL--------------QGRTCLHYAAYYGHSDCL  132 (460)
Q Consensus        76 ---------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--------------~g~t~L~~A~~~g~~~iv  132 (460)
                               ...|..|.||||+|+..|+.+++++|+++|+++ +..+.              .|.||||+|+..|+.+++
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  164 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV  164 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence                     225678999999999999999999999999998 55554              799999999999999999


Q ss_pred             HHHHH---hcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCCccccCC---CCCCCC
Q 012618          133 QALLT---AARTSPVANTWGFSRFVNIRDESGATPLHLAARQGW---------SECVHTLLDNGALACSST---GGNGYP  197 (460)
Q Consensus       133 ~~Ll~---~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~---~~~d~~  197 (460)
                      ++|++   .+++            ++.+|..|.||||+|+..|+         .+++++|+++|++++...   +..|..
T Consensus       165 ~~Ll~~~~~gad------------~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~  232 (273)
T 2pnn_A          165 KFLLQNSWQPAD------------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK  232 (273)
T ss_dssp             HHHHHCSSCCCC------------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT
T ss_pred             HHHHhcccCCCC------------ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCC
Confidence            99999   8887            89999999999999999998         899999999999765321   346788


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCCHHH
Q 012618          198 GSTPLHFAARGGSLECIRELLAWGA-DRVQPDAFGRIPYA  236 (460)
Q Consensus       198 g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~G~tpL~  236 (460)
                      |.||||+|+..|+.++|++|+++|+ |+......+.+|-+
T Consensus       233 g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          233 GLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             CCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            9999999999999999999999999 88888777776643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.6e-35  Score=277.40  Aligned_cols=193  Identities=25%  Similarity=0.225  Sum_probs=170.1

Q ss_pred             CccHHHHHHHcCcHH----HHHHHHhccCCCCCCcc----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCccccC---
Q 012618           46 KQSALHLAAAYGQIE----VLSMLLDQFFLYTNTDA----LNRYKQTPLMVAAMN---GKLSCVKKLIESGAFILNF---  111 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~----iv~~Ll~~~~~~~~~~~----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~---  111 (460)
                      |+||||+|+..|+.+    ++++|++.   +++++.    .|..|.||||+|+..   |+.+++++|++.|+++...   
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~---g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWN---SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHH---TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHc---CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            678899999988886    56677777   888887    788899999999988   8999999999888766322   


Q ss_pred             -------CCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC-------------CCCHHHHHHHc
Q 012618          112 -------DSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES-------------GATPLHLAARQ  171 (460)
Q Consensus       112 -------~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~-------------g~t~L~~A~~~  171 (460)
                             .+..|+||||+|+..|+.+++++|++.+++            ++.++..             |.||||+|+..
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  146 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD------------VHLRACGRFFQKHQGTCFYFGELPLSLAACT  146 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCcccccccccccccccccCCCCHHHHHHHc
Confidence                   236799999999999999999999999988            5666654             99999999999


Q ss_pred             CCHHHHHHHHH---cCCccccCCCCCCCCCChHHHHHHh--cCCHH-------HHHHHHHcCCCC-------CCCCCCCC
Q 012618          172 GWSECVHTLLD---NGALACSSTGGNGYPGSTPLHFAAR--GGSLE-------CIRELLAWGADR-------VQPDAFGR  232 (460)
Q Consensus       172 g~~~~v~~Ll~---~ga~~~~~~~~~d~~g~TpLh~A~~--~g~~~-------~v~~Ll~~gad~-------~~~d~~G~  232 (460)
                      |+.+++++|++   +|+    +.+.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+
T Consensus       147 ~~~~~v~~Ll~~~~~ga----~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~  222 (256)
T 2etb_A          147 KQWDVVTYLLENPHQPA----SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL  222 (256)
T ss_dssp             TCHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSC
T ss_pred             CCHHHHHHHHhccccCC----CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCC
Confidence            99999999999   899    566778899999999999  88888       999999999999       89999999


Q ss_pred             CHHHHHHHhChHHHHHhhCCCCCCC
Q 012618          233 IPYAIALKYKHQACAALLNPSSAEP  257 (460)
Q Consensus       233 tpL~~A~~~~~~~i~~~Ll~~ga~~  257 (460)
                      ||||+|+..++.+++++|+++|+++
T Consensus       223 tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          223 TPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            9999999999999999999988643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.3e-35  Score=280.55  Aligned_cols=204  Identities=22%  Similarity=0.184  Sum_probs=173.6

Q ss_pred             CCCCCccHHHHHHHcCcHHHHHHHHhccC-CCCCCc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCcc-----
Q 012618           42 SGYGKQSALHLAAAYGQIEVLSMLLDQFF-LYTNTD----ALNRYKQTPLMVAAMN---GKLSCVKKLIESGAFI-----  108 (460)
Q Consensus        42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~-~~~~~~----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~-----  108 (460)
                      .+..|.||||+|+..|+.++|+.|++... .+.+++    ..+..|+||||+|+..   |+.+++++|++.|+++     
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~   88 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ   88 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence            35678999999999999999998887311 155555    3578999999999987   9999999999998753     


Q ss_pred             -ccC----CCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCC--------------CCCCHHHHHH
Q 012618          109 -LNF----DSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE--------------SGATPLHLAA  169 (460)
Q Consensus       109 -~~~----~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~--------------~g~t~L~~A~  169 (460)
                       ++.    .+..|+||||+|+..|+.+++++|++.+++            ++.++.              .|.||||+|+
T Consensus        89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~------------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~  156 (273)
T 2pnn_A           89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD------------VQAAANGDFFKKTKGRPGFYFGELPLSLAA  156 (273)
T ss_dssp             HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCBCSGGGSSCSSSCCCCSCBSHHHHHH
T ss_pred             HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------cCccccccccccccccccccCCCCHHHHHH
Confidence             122    456899999999999999999999999988            555554              8999999999


Q ss_pred             HcCCHHHHHHHHH---cCCccccCCCCCCCCCChHHHHHHhcCC---------HHHHHHHHHcCCCCC-------CCCCC
Q 012618          170 RQGWSECVHTLLD---NGALACSSTGGNGYPGSTPLHFAARGGS---------LECIRELLAWGADRV-------QPDAF  230 (460)
Q Consensus       170 ~~g~~~~v~~Ll~---~ga~~~~~~~~~d~~g~TpLh~A~~~g~---------~~~v~~Ll~~gad~~-------~~d~~  230 (460)
                      ..|+.+++++|++   +|+    +.+.+|..|+||||+|+..|+         .+++++|+++|++++       .+|..
T Consensus       157 ~~g~~~~v~~Ll~~~~~ga----d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~  232 (273)
T 2pnn_A          157 CTNQLAIVKFLLQNSWQPA----DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK  232 (273)
T ss_dssp             HTTCHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT
T ss_pred             HcCCHHHHHHHHhcccCCC----CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCC
Confidence            9999999999999   899    566778899999999999998         899999999999997       48999


Q ss_pred             CCCHHHHHHHhChHHHHHhhCCCCC-CCCccc
Q 012618          231 GRIPYAIALKYKHQACAALLNPSSA-EPLVWP  261 (460)
Q Consensus       231 G~tpL~~A~~~~~~~i~~~Ll~~ga-~~~~~~  261 (460)
                      |+||||+|+..++.+++++|+++|| +|...+
T Consensus       233 g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~  264 (273)
T 2pnn_A          233 GLTPLALAASSGKIGVLAYILQREIHEPECRH  264 (273)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHTC------
T ss_pred             CCCHHHHHHHhChHHHHHHHHHCCCCCchhhh
Confidence            9999999999999999999999999 666544

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.1e-34  Score=251.06  Aligned_cols=159  Identities=35%  Similarity=0.443  Sum_probs=110.8

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG  127 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  127 (460)
                      ++|+.|++.|+.++|++||++   |+++|.+|..|+||||+|+..++.+++++|++.|+++ +..+..|+||||+|+..|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~---Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN---GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcC
Confidence            457777777777777777777   7777777777777777777777777777777777766 556667777777777777


Q ss_pred             CHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHh
Q 012618          128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAAR  207 (460)
Q Consensus       128 ~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~  207 (460)
                      +.+++++|++.|++            +|.+|..|+||||+|+..|+.++|++|+++|+    +++.+|..|+||||+|++
T Consensus        82 ~~~~v~~Ll~~gad------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~G~TpL~~A~~  145 (169)
T 4gpm_A           82 HKEVVKLLISKGAD------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGA----DVNTSDSDGRTPLDLARE  145 (169)
T ss_dssp             CHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHHHCcCC------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHHHHHHH
Confidence            77777777777766            66777777777777777777777777777776    445556667777777777


Q ss_pred             cCCHHHHHHHHHcCCCCCC
Q 012618          208 GGSLECIRELLAWGADRVQ  226 (460)
Q Consensus       208 ~g~~~~v~~Ll~~gad~~~  226 (460)
                      .|+.+++++|+++||+++.
T Consensus       146 ~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          146 HGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             TTCHHHHHHHHTC------
T ss_pred             cCCHHHHHHHHHCCCCcCC
Confidence            7777777777777776653

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.1e-33  Score=249.52  Aligned_cols=158  Identities=37%  Similarity=0.508  Sum_probs=147.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCC
Q 012618           84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT  163 (460)
Q Consensus        84 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t  163 (460)
                      ++|+.|+..|+.++|++||+.|+++ +..|..|+||||+|+..++.+++++|++.+++            ++.+|..|.|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad------------~~~~d~~g~T   72 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISKGAD------------VNAKDSDGRT   72 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc------------hhhhccCCCC
Confidence            5799999999999999999999998 88889999999999999999999999999998            8999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Q 012618          164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH  243 (460)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~  243 (460)
                      |||+|+..|+.++|++|+++|+    +++.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+|||++|+.+++
T Consensus        73 pLh~A~~~g~~~~v~~Ll~~ga----dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~  148 (169)
T 4gpm_A           73 PLHHAAENGHKEVVKLLISKGA----DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN  148 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHCcC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999    556778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCCC
Q 012618          244 QACAALLNPSSAEPL  258 (460)
Q Consensus       244 ~~i~~~Ll~~ga~~~  258 (460)
                      .+++++|+++||+..
T Consensus       149 ~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          149 EEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHHHTC-----
T ss_pred             HHHHHHHHHCCCCcC
Confidence            999999999999653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.6e-34  Score=271.99  Aligned_cols=199  Identities=25%  Similarity=0.299  Sum_probs=174.3

Q ss_pred             CCcHHHHHHHcCCHH----HHHHHHHcCCCcccc--cCCCCCccHHHHHHHc---CcHHHHHHHHhccCCCCCCcc----
Q 012618           11 SESALFVAVENGDLQ----MIEAMVEADPTVLGM--TSGYGKQSALHLAAAY---GQIEVLSMLLDQFFLYTNTDA----   77 (460)
Q Consensus        11 g~t~L~~Aa~~g~~~----~vk~Ll~~~~~~~~~--~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~----   77 (460)
                      |.||||+|+..|+.+    ++++|++.|.+++..  ..+..|.||||+|+..   |+.++|++|++.   +++++.    
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~---g~~~~~~~~~   78 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI---DKDSGNPKPL   78 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH---HHHTTCSSCG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc---CCcccchhhh
Confidence            789999999999997    667777789988640  1356899999999999   999999999998   666653    


Q ss_pred             -------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCC-------------CChHHHHHHHcCCHHHHHHHHH
Q 012618           78 -------LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQ-------------GRTCLHYAAYYGHSDCLQALLT  137 (460)
Q Consensus        78 -------~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-------------g~t~L~~A~~~g~~~iv~~Ll~  137 (460)
                             .|..|.||||+|+..|+.+++++|++.|+++ +..+..             |.||||+|+..|+.+++++|++
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  157 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE  157 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                   3477999999999999999999999999998 555554             9999999999999999999999


Q ss_pred             ---hcCCCCCcccCCCccccccCCCCCCCHHHHHHH--cCCHH-------HHHHHHHcCCccccCC---CCCCCCCChHH
Q 012618          138 ---AARTSPVANTWGFSRFVNIRDESGATPLHLAAR--QGWSE-------CVHTLLDNGALACSST---GGNGYPGSTPL  202 (460)
Q Consensus       138 ---~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~--~g~~~-------~v~~Ll~~ga~~~~~~---~~~d~~g~TpL  202 (460)
                         .+++            ++.+|..|.||||+|+.  .++.+       ++++|+++|++++...   +.+|..|.|||
T Consensus       158 ~~~~ga~------------~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL  225 (256)
T 2etb_A          158 NPHQPAS------------LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL  225 (256)
T ss_dssp             CSSCCCC------------TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHH
T ss_pred             ccccCCC------------cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHH
Confidence               8887            89999999999999999  88888       9999999999663221   56788999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCC
Q 012618          203 HFAARGGSLECIRELLAWGADRV  225 (460)
Q Consensus       203 h~A~~~g~~~~v~~Ll~~gad~~  225 (460)
                      |+|+..|+.+++++|+++|++..
T Consensus       226 ~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          226 KLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHhCCCCCC
Confidence            99999999999999999987653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.2e-33  Score=266.60  Aligned_cols=205  Identities=20%  Similarity=0.176  Sum_probs=173.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----cCCCccccc--CCCCCccHHHHHH---HcCcHHHHHHHHhccCC--------
Q 012618            9 ERSESALFVAVENGDLQMIEAMVE----ADPTVLGMT--SGYGKQSALHLAA---AYGQIEVLSMLLDQFFL--------   71 (460)
Q Consensus         9 ~~g~t~L~~Aa~~g~~~~vk~Ll~----~~~~~~~~~--~~~~g~t~Lh~A~---~~g~~~iv~~Ll~~~~~--------   71 (460)
                      ..+.++||.|+..|+.+.|+.|++    .+.+++...  .+..|.||||+|+   ..|+.++|++|++....        
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   82 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI   82 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh
Confidence            457899999999999996555555    888886443  2357999999999   67999999999997210        


Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCC--------------CCCChHHHHHHHcCCHHHHHHHHH
Q 012618           72 YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDS--------------LQGRTCLHYAAYYGHSDCLQALLT  137 (460)
Q Consensus        72 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------~~g~t~L~~A~~~g~~~iv~~Ll~  137 (460)
                      ..+++..|..|+||||+|+..|+.++|++|++.|+++ +..+              ..|+||||+|+..|+.+++++|++
T Consensus        83 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence            1334556668999999999999999999999999998 5555              579999999999999999999999


Q ss_pred             ---hcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCCccccCC---CCCCCCCChHH
Q 012618          138 ---AARTSPVANTWGFSRFVNIRDESGATPLHLAARQGW---------SECVHTLLDNGALACSST---GGNGYPGSTPL  202 (460)
Q Consensus       138 ---~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~---------~~~v~~Ll~~ga~~~~~~---~~~d~~g~TpL  202 (460)
                         .+++            ++.+|..|.||||+|+..++         .+++++|+++|++++...   +..|..|.|||
T Consensus       162 ~~~~ga~------------~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL  229 (260)
T 3jxi_A          162 NGHKQAD------------LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL  229 (260)
T ss_dssp             CSSCCCC------------TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred             ccccCCC------------CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH
Confidence               7887            89999999999999999887         799999999999664322   45778899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCCC
Q 012618          203 HFAARGGSLECIRELLAWGADRVQ  226 (460)
Q Consensus       203 h~A~~~g~~~~v~~Ll~~gad~~~  226 (460)
                      |+|+..|+.++|++|+++|++...
T Consensus       230 ~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          230 MMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHhCCCccc
Confidence            999999999999999999876543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-34  Score=282.04  Aligned_cols=243  Identities=17%  Similarity=0.090  Sum_probs=187.0

Q ss_pred             CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc---------------CCCCCccHHHHHHHcCcHHHHHHH
Q 012618            2 GQRMSC-RERSESALFVAVENGDLQMIEAMVEADPTVLGMT---------------SGYGKQSALHLAAAYGQIEVLSML   65 (460)
Q Consensus         2 g~~~~~-~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~---------------~~~~g~t~Lh~A~~~g~~~iv~~L   65 (460)
                      |.++.. +..|.++++     |+.++|+.||++|.+.....               ......+.+|+|+..+..+++++|
T Consensus        42 ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l  116 (327)
T 1sw6_A           42 PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF  116 (327)
T ss_dssp             SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHC
T ss_pred             CcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHH
Confidence            344443 457888876     99999999999987653310               001112345888888889999999


Q ss_pred             HhccCCCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCC---HHHHHHHHHhcCC
Q 012618           66 LDQFFLYTNTDA-LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH---SDCLQALLTAART  141 (460)
Q Consensus        66 l~~~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~---~~iv~~Ll~~~~~  141 (460)
                      ++.   |+++|. .|..|+||||+|+..|+.++|++|+++|+++ +..+..|+||||+|+..|+   .++++.|++.+..
T Consensus       117 ~~~---g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~  192 (327)
T 1sw6_A          117 PNT---QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP  192 (327)
T ss_dssp             TTS---CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG
T ss_pred             Hhc---CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc
Confidence            999   999999 8999999999999999999999999999998 7888999999999999998   6788888887632


Q ss_pred             CCCcccCCCccccccCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCcc----------------ccCCCCCCCCCChH
Q 012618          142 SPVANTWGFSRFVNIRDESGATPLHLAAR----QGWSECVHTLLDNGALA----------------CSSTGGNGYPGSTP  201 (460)
Q Consensus       142 ~~~~~~~~~~~~v~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~ga~~----------------~~~~~~~d~~g~Tp  201 (460)
                      .           ++.+|..|.||||+|+.    .|+.+++++|++.++..                ..+.+..+..|.||
T Consensus       193 ~-----------~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~  261 (327)
T 1sw6_A          193 C-----------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS  261 (327)
T ss_dssp             G-----------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred             c-----------ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCCh
Confidence            1           89999999999999999    89999999999883210                12556778899999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHH
Q 012618          202 LHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKA  281 (460)
Q Consensus       202 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a  281 (460)
                      ||+|+.      +++|+++  +++.+|..|+||||+|+..++.+++++|+++|+++..          .+..++++|+.|
T Consensus       262 L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~----------~d~~G~TpL~~A  323 (327)
T 1sw6_A          262 ILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI----------ANKSGLRPVDFG  323 (327)
T ss_dssp             HHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTC----------CCTTSCCGGGGT
T ss_pred             hHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc----------cCCCCCCHHHHH
Confidence            999986      8999998  6888999999999999999999999999999997765          344566666665


Q ss_pred             H
Q 012618          282 L  282 (460)
Q Consensus       282 ~  282 (460)
                      +
T Consensus       324 ~  324 (327)
T 1sw6_A          324 A  324 (327)
T ss_dssp             C
T ss_pred             H
Confidence            4

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=6.2e-34  Score=278.27  Aligned_cols=213  Identities=17%  Similarity=0.122  Sum_probs=169.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcC
Q 012618           14 ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNG   93 (460)
Q Consensus        14 ~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g   93 (460)
                      .+|.|+..+..++++.|++.|.+++.. .+..|.||||+|+..|+.++|++||++   |++++.+|..|+||||+|+..|
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~---Gad~n~~d~~g~TpLh~A~~~g  175 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKH---GSNRLYGDNMGESCLVKAVKSV  175 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTBCCTTCCCHHHHHHHSS
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHhc
Confidence            458888888999999999999998652 356899999999999999999999999   9999999999999999999999


Q ss_pred             C---HHHHHHHHHcCCccccCCCCCCChHHHHHHH----cCCHHHHHHHHHhcCCCCC--------cccCCCccccccCC
Q 012618           94 K---LSCVKKLIESGAFILNFDSLQGRTCLHYAAY----YGHSDCLQALLTAARTSPV--------ANTWGFSRFVNIRD  158 (460)
Q Consensus        94 ~---~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~~~~~~~--------~~~~~~~~~v~~~d  158 (460)
                      +   .++++.|++.+....+..+..|+||||+|+.    .|+.+++++|++.+.....        .........++.++
T Consensus       176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~  255 (327)
T 1sw6_A          176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN  255 (327)
T ss_dssp             HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred             ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccc
Confidence            8   7888888888744448888999999999999    8999999999988421000        00000012278899


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618          159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA  238 (460)
Q Consensus       159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A  238 (460)
                      ..|.||||+|+.      +++|++++      ++.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|
T Consensus       256 ~~g~t~L~~a~~------~~~Ll~~~------~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          256 GERKDSILENLD------LKWIIANM------LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             ----CHHHHHCS------HHHHHHHT------TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             ccCCChhHHHHH------HHHHHHhC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            999999999996      99999984      356788999999999999999999999999999999999999999999


Q ss_pred             HHhC
Q 012618          239 LKYK  242 (460)
Q Consensus       239 ~~~~  242 (460)
                      +++|
T Consensus       324 ~~~g  327 (327)
T 1sw6_A          324 AGLE  327 (327)
T ss_dssp             CC--
T ss_pred             HhcC
Confidence            8654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=6.5e-34  Score=268.33  Aligned_cols=197  Identities=19%  Similarity=0.106  Sum_probs=172.4

Q ss_pred             CCccHHHHHHHcCcHHHHHHH----HhccCCCCCCccCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCcc-----
Q 012618           45 GKQSALHLAAAYGQIEVLSML----LDQFFLYTNTDALN----RYKQTPLMVAA---MNGKLSCVKKLIESGAFI-----  108 (460)
Q Consensus        45 ~g~t~Lh~A~~~g~~~iv~~L----l~~~~~~~~~~~~~----~~g~tpL~~A~---~~g~~~~v~~Ll~~g~~~-----  108 (460)
                      .++|+||.|+..|+.+.|+.|    ++.   +.+++..+    ..|.||||+|+   ..|+.+++++|++.|+++     
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~---~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTH---KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHH---TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            568999999999999955544    457   88888666    67999999999   679999999999998642     


Q ss_pred             -----ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC--------------CCCCCHHHHHH
Q 012618          109 -----LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD--------------ESGATPLHLAA  169 (460)
Q Consensus       109 -----~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d--------------~~g~t~L~~A~  169 (460)
                           ....+..|+||||+|+..|+.+++++|++.+++            ++.++              ..|.||||+|+
T Consensus        81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~  148 (260)
T 3jxi_A           81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD------------VHAQARGRFFQPKDEGGYFYFGELPLSLAA  148 (260)
T ss_dssp             HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCEECCCSSSCCCCSCCSCSSHHHHHH
T ss_pred             hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC------------cCccccccccCcccccccccCCCCHHHHHH
Confidence                 133345899999999999999999999999988            56666              68999999999


Q ss_pred             HcCCHHHHHHHHH---cCCccccCCCCCCCCCChHHHHHHhcCC---------HHHHHHHHHcCCCC-------CCCCCC
Q 012618          170 RQGWSECVHTLLD---NGALACSSTGGNGYPGSTPLHFAARGGS---------LECIRELLAWGADR-------VQPDAF  230 (460)
Q Consensus       170 ~~g~~~~v~~Ll~---~ga~~~~~~~~~d~~g~TpLh~A~~~g~---------~~~v~~Ll~~gad~-------~~~d~~  230 (460)
                      ..|+.+++++|++   +|+    +++.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..
T Consensus       149 ~~g~~~~v~~Ll~~~~~ga----~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~  224 (260)
T 3jxi_A          149 CTNQPHIVHYLTENGHKQA----DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND  224 (260)
T ss_dssp             HTTCHHHHHHHHHCSSCCC----CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT
T ss_pred             HcCCHHHHHHHHhccccCC----CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCC
Confidence            9999999999999   888    566778899999999998888         79999999999999       679999


Q ss_pred             CCCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618          231 GRIPYAIALKYKHQACAALLNPSSAEPLVW  260 (460)
Q Consensus       231 G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~  260 (460)
                      |+||||+|+..|+.+++++|+++|+++..+
T Consensus       225 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          225 GLSPLMMAAKTGKIGIFQHIIRREIADAAA  254 (260)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCCcccc
Confidence            999999999999999999999998755443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=1.6e-32  Score=261.68  Aligned_cols=190  Identities=20%  Similarity=0.214  Sum_probs=176.2

Q ss_pred             CccHHHHHHHcCcHHHHHHHHhccCCCCC--CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618           46 KQSALHLAAAYGQIEVLSMLLDQFFLYTN--TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  123 (460)
                      ..+++|.|+..++.+.++.+++.   +.+  +|..|..|+||||+|+..|+.+++++|++.|+...+..+..|+||||+|
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~---~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSAR---LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHH---HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHH---HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence            35788999999999999999987   555  8889999999999999999999999999999954588899999999999


Q ss_pred             H-----HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCC
Q 012618          124 A-----YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPG  198 (460)
Q Consensus       124 ~-----~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g  198 (460)
                      +     ..++.+++++|++.+..            ++..+..|.||||+|+..|+.++|++|+++|+    +++.+|..|
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~ga----d~n~~d~~G  216 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNI------------NAKASQAGQTALMLAVSHGRVDVVKALLACEA----DVNVQDDDG  216 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCT------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTS
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCC------------ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCC----CCCCCCCCC
Confidence            9     66889999999999977            67888999999999999999999999999999    566778899


Q ss_pred             ChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCC
Q 012618          199 STPLHFAARGGSLECIRELLA-WGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS  254 (460)
Q Consensus       199 ~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~g  254 (460)
                      +||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+..++.+++++|+++.
T Consensus       217 ~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          217 STALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999999 89999999999999999999999999999998764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=2.2e-31  Score=234.96  Aligned_cols=168  Identities=27%  Similarity=0.309  Sum_probs=126.3

Q ss_pred             ccHHHHHHHcCcHHHHHHHHhccCCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618           47 QSALHLAAAYGQIEVLSMLLDQFFLYTN-TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY  125 (460)
Q Consensus        47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  125 (460)
                      .||||.|+..|+.+++++|++.   +.+ ++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRK---GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLAST   78 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTT---CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHc---CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHH
Confidence            4778888888888888888877   544 6777777888888888888888888888888776 6666778888888888


Q ss_pred             cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618          126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA  205 (460)
Q Consensus       126 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A  205 (460)
                      .|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|
T Consensus        79 ~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A  142 (172)
T 3v30_A           79 GGYTDIVGLLLERDVD------------INIYDWNGGTPLLYAVRGNHVKCVEALLARGA----DLTTEADSGYTPMDLA  142 (172)
T ss_dssp             TTCHHHHHHHHTTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHH
T ss_pred             CCCHHHHHHHHHcCCC------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CccccCCCCCCHHHHH
Confidence            8888888888887776            67778888888888888888888888888887    4555667788888888


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCCCCCH
Q 012618          206 ARGGSLECIRELLAWGADRVQPDAFGRIP  234 (460)
Q Consensus       206 ~~~g~~~~v~~Ll~~gad~~~~d~~G~tp  234 (460)
                      +..|+.+++++|+++|+++...+..|.||
T Consensus       143 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          143 VALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            88888888888888888877777777766

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=1e-31  Score=256.23  Aligned_cols=191  Identities=26%  Similarity=0.286  Sum_probs=175.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCC-CCccCCCCCCcHHHHH
Q 012618           11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYT-NTDALNRYKQTPLMVA   89 (460)
Q Consensus        11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~-~~~~~~~~g~tpL~~A   89 (460)
                      ..+++|.|+..|+++.++.+++.+.+......+.+|.||||+|+..|+.++|++|++.   |+ +++..+..|.||||+|
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~---g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDS---GVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCcCCCCCCCCCCHHHHH
Confidence            3567889999999999999998877744445567899999999999999999999999   87 9999999999999999


Q ss_pred             H-----HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCH
Q 012618           90 A-----MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATP  164 (460)
Q Consensus        90 ~-----~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~  164 (460)
                      +     ..++.+++++|++.|..+ ...+..|+||||+|+..|+.+++++|++.|++            +|.+|..|.||
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad------------~n~~d~~G~Tp  219 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD------------VNVQDDDGSTA  219 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCH
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC------------CCCCCCCCCCH
Confidence            9     668999999999999876 67778899999999999999999999999998            89999999999


Q ss_pred             HHHHHHcCCHHHHHHHHH-cCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 012618          165 LHLAARQGWSECVHTLLD-NGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG  221 (460)
Q Consensus       165 L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g  221 (460)
                      ||+|+..|+.+++++|++ .|+    +.+..|..|.||||+|+..|+.+++++|++++
T Consensus       220 Lh~A~~~g~~~iv~~Ll~~~ga----d~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          220 LMCACEHGHKEIAGLLLAVPSC----DISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHTCHHHHHHHHTSTTC----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHhcCCC----CCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999999999 899    56677889999999999999999999999874

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=2.6e-31  Score=238.99  Aligned_cols=163  Identities=31%  Similarity=0.404  Sum_probs=130.3

Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcccc
Q 012618           75 TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFV  154 (460)
Q Consensus        75 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v  154 (460)
                      +|.+|..|+||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++            +
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~   94 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN------------V   94 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC------------T
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCC------------C
Confidence            3456777888888888888888888888887776 56667788888888888888888888888776            6


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCH
Q 012618          155 NIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP  234 (460)
Q Consensus       155 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tp  234 (460)
                      +.+|..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        95 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  170 (192)
T 2rfm_A           95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA----NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA  170 (192)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            7778888888888888888888888888887    445666778888888888888888888888888888888888888


Q ss_pred             HHHHHHhChHHHHHhhCCCC
Q 012618          235 YAIALKYKHQACAALLNPSS  254 (460)
Q Consensus       235 L~~A~~~~~~~i~~~Ll~~g  254 (460)
                      |++|+..++.+++++|++++
T Consensus       171 l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          171 EASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHhcc
Confidence            88888888888888886543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.9e-30  Score=226.47  Aligned_cols=157  Identities=34%  Similarity=0.427  Sum_probs=113.8

Q ss_pred             ccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618           47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY  126 (460)
Q Consensus        47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  126 (460)
                      .||||.|+..|+.+++++|++.   +++++..+..|.||||+|+. |+.+++++|++.|+++ +..+..|+||||+|+..
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQN---NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTS---CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhC---CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            4777777777777777777776   77777777777777777777 7777777777777766 55666777777777777


Q ss_pred             CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHH
Q 012618          127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAA  206 (460)
Q Consensus       127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~  206 (460)
                      |+.+++++|++.+.+            ++.+|..|.||||+|+..|+.+++++|+++|++   ..+..+..|.||||+|+
T Consensus        81 ~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~t~l~~A~  145 (162)
T 1ihb_A           81 GFLDTLQTLLEFQAD------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLAR  145 (162)
T ss_dssp             TCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHHHcCCC------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC---CCCCcCCCCCcHHHHHH
Confidence            777777777777766            667777777777777777777777777777762   13455666777777777


Q ss_pred             hcCCHHHHHHHHHcCCC
Q 012618          207 RGGSLECIRELLAWGAD  223 (460)
Q Consensus       207 ~~g~~~~v~~Ll~~gad  223 (460)
                      ..|+.+++++|+++|||
T Consensus       146 ~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          146 LYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HTTCHHHHHHHHHTC--
T ss_pred             HcCCHHHHHHHHHhCCC
Confidence            77777777777777765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.6e-30  Score=233.81  Aligned_cols=160  Identities=26%  Similarity=0.339  Sum_probs=150.6

Q ss_pred             CCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHH
Q 012618           42 SGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLH  121 (460)
Q Consensus        42 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  121 (460)
                      .+..|.||||+|+..|+.+++++|++.   +++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~  106 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVEN---FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM  106 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHH---HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHh---ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            356789999999999999999999999   8999999999999999999999999999999999988 777889999999


Q ss_pred             HHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChH
Q 012618          122 YAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTP  201 (460)
Q Consensus       122 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp  201 (460)
                      +|+..|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||
T Consensus       107 ~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~  170 (192)
T 2rfm_A          107 WSIIFGYSEMSYFLLEHGAN------------VNDRNLEGETPLIVASKYGRSEIVKKLLELGA----DISARDLTGLTA  170 (192)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC------------SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CTTCBCTTSCBH
T ss_pred             HHHHcCCHHHHHHHHHCCCC------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCCH
Confidence            99999999999999999988            89999999999999999999999999999999    556778899999


Q ss_pred             HHHHHhcCCHHHHHHHHHcC
Q 012618          202 LHFAARGGSLECIRELLAWG  221 (460)
Q Consensus       202 Lh~A~~~g~~~~v~~Ll~~g  221 (460)
                      ||+|+..|+.+++++|+++|
T Consensus       171 l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          171 EASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=4e-30  Score=226.46  Aligned_cols=155  Identities=33%  Similarity=0.409  Sum_probs=81.0

Q ss_pred             CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618           46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY  125 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  125 (460)
                      +.++|+.|+..|+.++|++|+++   +++++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMAN---GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             ccchHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            44555555555555555555555   5555555555555555555555555555555555544 4444455555555555


Q ss_pred             cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618          126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA  205 (460)
Q Consensus       126 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A  205 (460)
                      .|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+.+|..|.||||+|
T Consensus        90 ~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A  153 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGAD------------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA----DVNAQDKFGKTAFDIS  153 (169)
T ss_dssp             TTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHH
T ss_pred             cCCHHHHHHHHHcCCC------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHH
Confidence            5555555555555444            44444455555555555555555555555544    2233344444555555


Q ss_pred             HhcCCHHHHHHHHHc
Q 012618          206 ARGGSLECIRELLAW  220 (460)
Q Consensus       206 ~~~g~~~~v~~Ll~~  220 (460)
                      +..|+.+++++|+++
T Consensus       154 ~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          154 IDNGNEDLAEILQKL  168 (169)
T ss_dssp             HHTTCHHHHHHHHTC
T ss_pred             HHhCCHHHHHHHHHc
Confidence            555555555555443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=3.2e-30  Score=226.32  Aligned_cols=158  Identities=25%  Similarity=0.294  Sum_probs=99.0

Q ss_pred             CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618           46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY  125 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  125 (460)
                      |.||||+|+..|+.+++++|++.   +.+++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQ---ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS   78 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHH---SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHc---CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            45666666666666666666666   5666666666666666666666666666666666655 4455566666666666


Q ss_pred             cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618          126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA  205 (460)
Q Consensus       126 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A  205 (460)
                      .|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+..+..|.||||+|
T Consensus        79 ~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~A  142 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVD------------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA----DPTIETDSGYNSMDLA  142 (167)
T ss_dssp             HTCHHHHHHHHHHTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHH
T ss_pred             cCCHHHHHHHHHCCCC------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHH
Confidence            6666666666666655            55566666666666666666666666666666    3344455566666666


Q ss_pred             HhcCCHHHHHHHHHcCCC
Q 012618          206 ARGGSLECIRELLAWGAD  223 (460)
Q Consensus       206 ~~~g~~~~v~~Ll~~gad  223 (460)
                      +..|+.+++++|++++++
T Consensus       143 ~~~~~~~~~~~L~~~~~~  160 (167)
T 3v31_A          143 VALGYRSVQQVIESHLLK  160 (167)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHHHHH
Confidence            666666666666665543

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=2e-33  Score=260.55  Aligned_cols=201  Identities=19%  Similarity=0.142  Sum_probs=171.3

Q ss_pred             HHHHHHcCCCcccc-cCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 012618           27 IEAMVEADPTVLGM-TSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESG  105 (460)
Q Consensus        27 vk~Ll~~~~~~~~~-~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g  105 (460)
                      |+.||+++++++.. ..+.++.||||+|+..|+.++|++|++.   |++++..|..|+||||+|+..|+.+++++|++.|
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE---MNDPSQPNEEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH---SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc---CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            56788888877533 3346788999999999999999999999   9999999999999999999999999999999999


Q ss_pred             CccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC-CCCCCHHHHH--HHcCCHHHHHHHHH
Q 012618          106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATPLHLA--ARQGWSECVHTLLD  182 (460)
Q Consensus       106 ~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d-~~g~t~L~~A--~~~g~~~~v~~Ll~  182 (460)
                      +++ +..|..|+||||+|+..|+.+++++|++.+++            ++.++ ..|.||||+|  +..|+.+++++|++
T Consensus        78 a~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~------------~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~  144 (229)
T 2vge_A           78 ANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGAA------------IFATTLSDGATAFEKCDPYREGYADCATYLAD  144 (229)
T ss_dssp             CCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC------------TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH
T ss_pred             CCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------cccccCCCCCCHHHHHHHHhcChHHHHHHHHH
Confidence            998 77888999999999999999999999999988            78776 6999999999  99999999999999


Q ss_pred             cCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhChHHHHHhh
Q 012618          183 NGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD--RVQPDAFGRIPYAIALKYKHQACAALL  250 (460)
Q Consensus       183 ~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~G~tpL~~A~~~~~~~i~~~L  250 (460)
                      +|+    +.+..|..|.|||+.++....   +++|+++|++  ++.+|..|+||||+|+..|+.++++.+
T Consensus       145 ~ga----~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          145 VEQ----SMGLMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             HHH----HTTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             cCC----CcccccCCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            999    455567788999996665543   3678899998  778899999999999999999998764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=7.1e-30  Score=224.85  Aligned_cols=159  Identities=37%  Similarity=0.501  Sum_probs=125.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618           79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD  158 (460)
Q Consensus        79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d  158 (460)
                      ...+.|+|+.|+..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++++|++.+++            ++..|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~   77 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD------------VNAVD   77 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCC
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCccC
Confidence            344567888888888888888888888776 66667788888888888888888888887776            67777


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618          159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA  238 (460)
Q Consensus       159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A  238 (460)
                      ..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|
T Consensus        78 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  153 (169)
T 2y1l_E           78 HAGMTPLRLAALFGHLEIVEVLLKNGA----DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS  153 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            888888888888888888888888887    4455667788888888888888888888888888888888888888888


Q ss_pred             HHhChHHHHHhhCCCC
Q 012618          239 LKYKHQACAALLNPSS  254 (460)
Q Consensus       239 ~~~~~~~i~~~Ll~~g  254 (460)
                      +..++.+++++|+++|
T Consensus       154 ~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          154 IDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHTTCHHHHHHHHTC-
T ss_pred             HHhCCHHHHHHHHHcC
Confidence            8888888888887765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=3e-30  Score=226.52  Aligned_cols=158  Identities=23%  Similarity=0.358  Sum_probs=150.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC
Q 012618           81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES  160 (460)
Q Consensus        81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~  160 (460)
                      .|.||||.|+..|+.+++++|++.++++ +..+..|+||||+|+..|+.+++++|++.+++            ++..+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~   68 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD------------PQLLGKG   68 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC------------CCCcCCC
Confidence            5889999999999999999999999887 77888999999999999999999999999888            7889999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 012618          161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK  240 (460)
Q Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~  240 (460)
                      |.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+.
T Consensus        69 g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  144 (167)
T 3v31_A           69 RESALSLACSKGYTDIVKMLLDCGV----DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA  144 (167)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCC----CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999999999    556778899999999999999999999999999999999999999999999


Q ss_pred             hChHHHHHhhCCCCC
Q 012618          241 YKHQACAALLNPSSA  255 (460)
Q Consensus       241 ~~~~~i~~~Ll~~ga  255 (460)
                      .++.+++++|+++++
T Consensus       145 ~~~~~~~~~L~~~~~  159 (167)
T 3v31_A          145 LGYRSVQQVIESHLL  159 (167)
T ss_dssp             HTCHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHH
Confidence            999999999988765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=3.4e-30  Score=227.29  Aligned_cols=170  Identities=22%  Similarity=0.323  Sum_probs=150.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618           11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA   90 (460)
Q Consensus        11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~   90 (460)
                      +.+|||+|+..|+.++|++|++.++..... .+..|.||||+|+..|+.++|++|++.   |++++..+..|.||||+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~   77 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNK-PDERGFTPLIWASAFGEIETVRFLLEW---GADPHILAKERESALSLAS   77 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGC-CCTTSCCHHHHHHHTTCHHHHHHHHHH---TCCTTCCCTTCCCHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccC-CCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCchhhcccCCCHHHHHH
Confidence            468999999999999999999999885433 346899999999999999999999999   9999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH
Q 012618           91 MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR  170 (460)
Q Consensus        91 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~  170 (460)
                      ..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++            ++.+|..|.||||+|+.
T Consensus        78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------~~~~~~~g~t~l~~A~~  144 (172)
T 3v30_A           78 TGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD------------LTTEADSGYTPMDLAVA  144 (172)
T ss_dssp             HTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHH
T ss_pred             HCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------ccccCCCCCCHHHHHHH
Confidence            999999999999999998 77888999999999999999999999999988            89999999999999999


Q ss_pred             cCCHHHHHHHHHcCCccccCCCCCCCCCChH
Q 012618          171 QGWSECVHTLLDNGALACSSTGGNGYPGSTP  201 (460)
Q Consensus       171 ~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~Tp  201 (460)
                      .|+.+++++|+++|++.    ...+..|.||
T Consensus       145 ~~~~~~~~~L~~~~~~~----~~~~~~~~~p  171 (172)
T 3v30_A          145 LGYRKVQQVIENHILKL----FQSNLVPADP  171 (172)
T ss_dssp             HTCHHHHHHHHHHHHHH----SCC-------
T ss_pred             hCcHHHHHHHHHHHHHH----hcccCCCCCC
Confidence            99999999999999944    4445566665

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2.1e-30  Score=226.12  Aligned_cols=158  Identities=25%  Similarity=0.356  Sum_probs=147.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC
Q 012618           81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES  160 (460)
Q Consensus        81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~  160 (460)
                      ...||||.|+..|+.+++++|++.|+++ +..+..|+||||+|+. |+.+++++|++.+.+            ++.+|..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~------------~~~~~~~   69 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLRGAN------------PDLKDRT   69 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC------------TTCCCTT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHcCCC------------CCCCCCC
Confidence            4569999999999999999999999988 7778899999999999 999999999999988            7899999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Q 012618          161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD-RVQPDAFGRIPYAIAL  239 (460)
Q Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~tpL~~A~  239 (460)
                      |.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+
T Consensus        70 g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~  145 (162)
T 1ihb_A           70 GFAVIHDAARAGFLDTLQTLLEFQA----DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR  145 (162)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH
Confidence            9999999999999999999999999    5667788999999999999999999999999998 5999999999999999


Q ss_pred             HhChHHHHHhhCCCCCC
Q 012618          240 KYKHQACAALLNPSSAE  256 (460)
Q Consensus       240 ~~~~~~i~~~Ll~~ga~  256 (460)
                      ..++.+++++|+++||+
T Consensus       146 ~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          146 LYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HTTCHHHHHHHHHTC--
T ss_pred             HcCCHHHHHHHHHhCCC
Confidence            99999999999999984

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1e-29  Score=225.91  Aligned_cols=166  Identities=25%  Similarity=0.217  Sum_probs=103.6

Q ss_pred             CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHH
Q 012618           46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY  125 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  125 (460)
                      +.++||.|+..|+.++|++|++..  +.+++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+.
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNT--ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCT--TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            446666666666666666666652  4455666666666666666666666666666666665 4555566666666666


Q ss_pred             cCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHH
Q 012618          126 YGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFA  205 (460)
Q Consensus       126 ~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A  205 (460)
                      .|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|
T Consensus        82 ~~~~~~v~~Ll~~g~~------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A  145 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKAD------------INAVNEHGNVPLHYACFWGQDQVAEDLVANGA----LVSICNKYGEMPVDKA  145 (179)
T ss_dssp             TTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSSBCCTTSCCGGGGS
T ss_pred             cCCHHHHHHHHHcCCC------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CcchhccCCCCcHHHH
Confidence            6666666666666655            56666666666666666666666666666666    3344555666666666


Q ss_pred             HhcCCHHHHHHHHHcCCCCCCCCCC
Q 012618          206 ARGGSLECIRELLAWGADRVQPDAF  230 (460)
Q Consensus       206 ~~~g~~~~v~~Ll~~gad~~~~d~~  230 (460)
                      +..++.+++++|+++|++++..+..
T Consensus       146 ~~~~~~~~~~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A          146 KAPLRELLRERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSCBCCC
T ss_pred             HHHHHHHHHHHHHHhhcCcccCCcc
Confidence            6666666666666666666655433

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.2e-29  Score=225.54  Aligned_cols=167  Identities=23%  Similarity=0.276  Sum_probs=154.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCC
Q 012618           80 RYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDE  159 (460)
Q Consensus        80 ~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~  159 (460)
                      ..+.++||.|+..|+.+++++|++.+....+..+..|+||||+|+..|+.+++++|++.+++            ++.+|.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~   70 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR------------INVMNR   70 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC------------CCCcCC
Confidence            35789999999999999999999997665688889999999999999999999999999988            899999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 012618          160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL  239 (460)
Q Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~  239 (460)
                      .|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+
T Consensus        71 ~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  146 (179)
T 3f6q_A           71 GDDTPLHLAASHGHRDIVQKLLQYKA----DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK  146 (179)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH
Confidence            99999999999999999999999999    56677889999999999999999999999999999999999999999999


Q ss_pred             HhChHHHHHhhCCCCCCCCcccc
Q 012618          240 KYKHQACAALLNPSSAEPLVWPL  262 (460)
Q Consensus       240 ~~~~~~i~~~Ll~~ga~~~~~~~  262 (460)
                      ..++.+++++|+++|+++...+.
T Consensus       147 ~~~~~~~~~~L~~~g~~~~~~~~  169 (179)
T 3f6q_A          147 APLRELLRERAEKMGQNLNRIPY  169 (179)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCBCC
T ss_pred             HHHHHHHHHHHHHhhcCcccCCc
Confidence            99999999999999998876543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=4.4e-30  Score=225.00  Aligned_cols=157  Identities=29%  Similarity=0.340  Sum_probs=73.9

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618           45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA  124 (460)
Q Consensus        45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  124 (460)
                      +|.|+||.|+..|+.+++++|++..  +.+++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC   83 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTT--TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcC--CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence            3445555555555555555555531  3344444444555555555555555555555555444 334444444444444


Q ss_pred             HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHH
Q 012618          125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF  204 (460)
Q Consensus       125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~  204 (460)
                      ..|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+.+|..|.||||+
T Consensus        84 ~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~  147 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAV------------VNVADLWKFTPLHEAAAKGKYEICKLLLQHGA----DPTKKNRDGNTPLDL  147 (165)
T ss_dssp             HTTCHHHHHHHHHTTCC------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCTGGG
T ss_pred             HcCcHHHHHHHHhCCCC------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCCChhHh
Confidence            44444444444444444            34444444444444444444444444444444    223334444444444


Q ss_pred             HHhcCCHHHHHHHHHcC
Q 012618          205 AARGGSLECIRELLAWG  221 (460)
Q Consensus       205 A~~~g~~~~v~~Ll~~g  221 (460)
                      |+. ++.+++++|+++|
T Consensus       148 a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          148 VKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             SCT-TCHHHHHHHHTC-
T ss_pred             Hhc-CChHHHHHHhhcc
Confidence            333 4444444444443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=2.6e-29  Score=217.41  Aligned_cols=150  Identities=30%  Similarity=0.445  Sum_probs=120.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCC
Q 012618           83 QTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA  162 (460)
Q Consensus        83 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~  162 (460)
                      .|+||.|+..|+.+++++|++.|+++ + .+..|.||||+|+..|+.+++++|++.+.+            ++.++..|.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~   68 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS------------RDARTKVDR   68 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC------------TTCCCTTCC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCCCCCCCC
Confidence            47788888888888888888877765 2 356778888888888888888888887776            677788888


Q ss_pred             CHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 012618          163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYK  242 (460)
Q Consensus       163 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~  242 (460)
                      ||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+
T Consensus        69 t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  144 (153)
T 1awc_B           69 TPLHMAASEGHANIVEVLLKHGA----DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CHHHHHHHcChHHHHHHHHHcCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            88888888888888888888887    45566777888888888888888888888888888888888888888888888


Q ss_pred             hHHHHHhh
Q 012618          243 HQACAALL  250 (460)
Q Consensus       243 ~~~i~~~L  250 (460)
                      +.+++++|
T Consensus       145 ~~~i~~~L  152 (153)
T 1awc_B          145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            88888876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=3.2e-29  Score=219.52  Aligned_cols=160  Identities=29%  Similarity=0.329  Sum_probs=109.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC
Q 012618           79 NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD  158 (460)
Q Consensus        79 ~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d  158 (460)
                      |..|.||||.|+..|+.+++++|++.+.......+..|+||||+|+..|+.+++++|++.+.+            ++.+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~   72 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD------------VHAKD   72 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCC
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC------------CCccC
Confidence            445667777777777777777777654444455556667777777777777777777777666            66677


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 012618          159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIA  238 (460)
Q Consensus       159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A  238 (460)
                      ..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|
T Consensus        73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a  148 (165)
T 3twr_A           73 KGGLVPLHNACSYGHYEVAELLVKHGA----VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV  148 (165)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGS
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCC----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhH
Confidence            777777777777777777777777776    4445566677777777777777777777777777777777777777776


Q ss_pred             HHhChHHHHHhhCCCCC
Q 012618          239 LKYKHQACAALLNPSSA  255 (460)
Q Consensus       239 ~~~~~~~i~~~Ll~~ga  255 (460)
                      .. ++.+++++|+++||
T Consensus       149 ~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          149 KD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CT-TCHHHHHHHHTC--
T ss_pred             hc-CChHHHHHHhhccc
Confidence            55 66677777776665

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=9.7e-29  Score=213.79  Aligned_cols=149  Identities=24%  Similarity=0.361  Sum_probs=81.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc
Q 012618           13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN   92 (460)
Q Consensus        13 t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~   92 (460)
                      ++|+.|+..|+.++|++|+++|+++.   .+..|.||||+|+..|+.+++++|++.   +++++..+..|.||||+|+..
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRA---GVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHc
Confidence            45555555555555555555555442   134455555555555555555555555   555555555555555555555


Q ss_pred             CCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcC
Q 012618           93 GKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQG  172 (460)
Q Consensus        93 g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g  172 (460)
                      |+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++            ++.+|..|.||||+|+..|
T Consensus        78 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------~~~~~~~g~t~l~~A~~~~  144 (153)
T 1awc_B           78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD------------VHTQSKFCKTAFDISIDNG  144 (153)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTT
T ss_pred             ChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------ccccCCCCCCHHHHHHHcC
Confidence            5555555555555554 44444555555555555555555555555544            4445555555555555555


Q ss_pred             CHHHHHHH
Q 012618          173 WSECVHTL  180 (460)
Q Consensus       173 ~~~~v~~L  180 (460)
                      +.+++++|
T Consensus       145 ~~~i~~~L  152 (153)
T 1awc_B          145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            55555544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.5e-30  Score=242.68  Aligned_cols=190  Identities=19%  Similarity=0.186  Sum_probs=116.5

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618           45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA  124 (460)
Q Consensus        45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  124 (460)
                      .|.||||.|+..++.++++.||++   |++++.. ..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~---g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAH---GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred             cccccCchhhhhhhHHHHHHHhcc---CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            466777777777777777777777   7777643 56677777777777777777777777766 666677777777777


Q ss_pred             HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCC-hHHH
Q 012618          125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGS-TPLH  203 (460)
Q Consensus       125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~-TpLh  203 (460)
                      ..|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+..+..|. ||||
T Consensus        79 ~~g~~~~v~~Ll~~ga~------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~~~~t~l~  142 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVN------------VNAADSDGWTPLHCAASCNNVQVCKFLVESGA----AVFAMTYSDMQTAAD  142 (239)
T ss_dssp             HHTCHHHHHHHHHHTCC------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCSSSCCCHHH
T ss_pred             HcCCHHHHHHHHHcCCC------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CcceecCCCCcchHH
Confidence            77777777777777776            67777788888888888888888888888887    3444454555 8888


Q ss_pred             HH--HhcCCHHHHHHHHHcCCCCCCC---------CCCCCCHHHHHHHhChHHHHHhhCCCCCCC
Q 012618          204 FA--ARGGSLECIRELLAWGADRVQP---------DAFGRIPYAIALKYKHQACAALLNPSSAEP  257 (460)
Q Consensus       204 ~A--~~~g~~~~v~~Ll~~gad~~~~---------d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~  257 (460)
                      +|  +..|+.+++++|+++|++++..         +..+.+++++|+..|.  ++++|.+.+.+.
T Consensus       143 ~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~  205 (239)
T 1ycs_B          143 KCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDE  205 (239)
T ss_dssp             HCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSC
T ss_pred             HHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCC
Confidence            87  6777888888888888777665         5667888888877765  667776666543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=4.8e-31  Score=246.00  Aligned_cols=209  Identities=16%  Similarity=0.117  Sum_probs=150.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHH
Q 012618            9 ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMV   88 (460)
Q Consensus         9 ~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~   88 (460)
                      ..|.|||+.|+..|+.++++.|+++|++++..   ..|.||||+|+..|+.++|++|++.   +++++..|..|.||||+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~---~~~~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN---PLPLALLLDSSLEGEFDLVQRIIYE---VDDPSLPNDEGITALHN   76 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTST---TSSCCCCCTTSCCHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC---chhhHHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHH
Confidence            46899999999999999999999999998542   4678999999999999999999999   99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCC-CHHHH
Q 012618           89 AAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA-TPLHL  167 (460)
Q Consensus        89 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~-t~L~~  167 (460)
                      |+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|++.+++            ++.++..|. ||||+
T Consensus        77 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------~~~~~~~~~~t~l~~  143 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA------------VFAMTYSDMQTAADK  143 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCSSSCCCHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------cceecCCCCcchHHH
Confidence            99999999999999999998 77888999999999999999999999999998            788888877 99999


Q ss_pred             H--HHcCCHHHHHHHHHcCCccccC-----CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC------CCCCCCCCCH
Q 012618          168 A--ARQGWSECVHTLLDNGALACSS-----TGGNGYPGSTPLHFAARGGSLECIRELLAWGADR------VQPDAFGRIP  234 (460)
Q Consensus       168 A--~~~g~~~~v~~Ll~~ga~~~~~-----~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~------~~~d~~G~tp  234 (460)
                      |  +..|+.+++++|+++|++++..     ....+..+.+++++++..|.  +++.|.+.+.+.      ...+..|.+|
T Consensus       144 a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~~~~Ww~~~~~~~~G~~P  221 (239)
T 1ycs_B          144 CEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDEDEIEWWWARLNDKEGYVP  221 (239)
T ss_dssp             CCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTSCSSEEEEEETTEEEEEE
T ss_pred             HHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCCCCCEEEEEECCcEEEee
Confidence            9  7889999999999999966432     12336788999999998886  555555555441      2345566777


Q ss_pred             HHHH
Q 012618          235 YAIA  238 (460)
Q Consensus       235 L~~A  238 (460)
                      ..+.
T Consensus       222 ~~yv  225 (239)
T 1ycs_B          222 RNLL  225 (239)
T ss_dssp             GGGE
T ss_pred             hHHe
Confidence            6654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.6e-28  Score=212.82  Aligned_cols=152  Identities=32%  Similarity=0.431  Sum_probs=80.6

Q ss_pred             ccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618           47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY  126 (460)
Q Consensus        47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  126 (460)
                      .|+||.|+..|+.+++++|++.  .+.+++..+..|.||||+ +..|+.+++++|++.|+++ +..+..|.||||+|+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHR--ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT--TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             chHHHHHHHhCCHHHHHHHHHh--hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence            3555555555555555555554  134555555555555555 5555555555555555554 44444555555555555


Q ss_pred             CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHH
Q 012618          127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAA  206 (460)
Q Consensus       127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~  206 (460)
                      |+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++ +    +.+..|..|.||||+|+
T Consensus        79 ~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~----~~~~~~~~g~t~l~~A~  141 (156)
T 1bd8_A           79 GFLDTLKVLVEHGAD------------VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S----DLHRRDARGLTPLELAL  141 (156)
T ss_dssp             TCHHHHHHHHHTTCC------------SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S----CTTCCCTTSCCHHHHHH
T ss_pred             CcHHHHHHHHHcCCC------------CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c----CCCCcCCCCCCHHHHHH
Confidence            555555555555544            445555555555555555555555555554 3    33334444555555555


Q ss_pred             hcCCHHHHHHHHH
Q 012618          207 RGGSLECIRELLA  219 (460)
Q Consensus       207 ~~g~~~~v~~Ll~  219 (460)
                      ..|+.+++++|++
T Consensus       142 ~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          142 QRGAQDLVDILQG  154 (156)
T ss_dssp             HSCCHHHHHHHHT
T ss_pred             HcCcHHHHHHHHh
Confidence            5555555555543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=2.8e-28  Score=211.35  Aligned_cols=155  Identities=26%  Similarity=0.332  Sum_probs=142.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618           10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA   89 (460)
Q Consensus        10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A   89 (460)
                      ++.|+|+.|+..|+.+++++|++. ........+..|.||||+ +..|+.+++++|++.   |++++.+|..|.||||+|
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A   75 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ---GASPNVQDTSGTSPVHDA   75 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHH
Confidence            356899999999999999999998 422223345689999999 999999999999999   999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHH
Q 012618           90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAA  169 (460)
Q Consensus        90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~  169 (460)
                      +..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++. ++            ++.+|..|.||||+|+
T Consensus        76 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~------------~~~~~~~g~t~l~~A~  141 (156)
T 1bd8_A           76 ARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD------------LHRRDARGLTPLELAL  141 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC------------TTCCCTTSCCHHHHHH
T ss_pred             HHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC------------CCCcCCCCCCHHHHHH
Confidence            9999999999999999988 77888999999999999999999999998 66            7899999999999999


Q ss_pred             HcCCHHHHHHHHHc
Q 012618          170 RQGWSECVHTLLDN  183 (460)
Q Consensus       170 ~~g~~~~v~~Ll~~  183 (460)
                      ..|+.+++++|+++
T Consensus       142 ~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          142 QRGAQDLVDILQGH  155 (156)
T ss_dssp             HSCCHHHHHHHHTT
T ss_pred             HcCcHHHHHHHHhh
Confidence            99999999999975

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1e-31  Score=248.92  Aligned_cols=189  Identities=18%  Similarity=0.154  Sum_probs=167.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHH
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLM   87 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~   87 (460)
                      +..+.|+||+|+..|+.++|++|++.|++++.  .+..|.||||+|+..|+.+++++|++.   |++++..|..|+||||
T Consensus        18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~tpLh~A~~~g~~~~v~~Ll~~---ga~~n~~d~~g~tpLh   92 (229)
T 2vge_A           18 RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ--PNEEGITALHNAICGANYSIVDFLITA---GANVNSPDSHGWTPLH   92 (229)
T ss_dssp             TSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHH
T ss_pred             ccchhHHHHHHHHcCCHHHHHHHHhcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCCCCCCCCHHH
Confidence            44677899999999999999999999998855  356899999999999999999999999   9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH--HHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHH
Q 012618           88 VAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA--AYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL  165 (460)
Q Consensus        88 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L  165 (460)
                      +|+..|+.+++++|++.|+++....+..|+||||+|  +..|+.+++++|++.+++            ++.+|..|.|+|
T Consensus        93 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~------------~~~~~~~~~~~l  160 (229)
T 2vge_A           93 CAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS------------MGLMNSGAVYAL  160 (229)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH------------TTTSGGGEEEES
T ss_pred             HHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC------------cccccCCchHHH
Confidence            999999999999999999999555557999999999  999999999999999988            788888999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHH
Q 012618          166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL  218 (460)
Q Consensus       166 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll  218 (460)
                      +.++....   +++|++.|++++  .+.+|..|+||||+|+..|+.++|+.++
T Consensus       161 ~~~~~~~~---~~~ll~~ga~~~--~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          161 WDYSAEFG---DELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             SCBCCSST---TBCCBCTTCEEE--EEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             HHHhhccc---cccCcccccccc--ccccCCCcccHHHHHHHcCCcceeehhh
Confidence            86655543   368888998642  4557788999999999999999997654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=7.4e-30  Score=252.97  Aligned_cols=213  Identities=19%  Similarity=0.122  Sum_probs=156.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCC---CccCCCCCC
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLG-MTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN---TDALNRYKQ   83 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~---~~~~~~~g~   83 (460)
                      +..+.||||+|++.|+.++|++|+++|+.... ...+..|.||||+|+.+|+.++|++|+++   |++   .+..+.+ .
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~---gad~~~~~i~~~~-~  164 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL---APTEIMAMIQAEN-Y  164 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS---CTTTHHHHHSHHH-H
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC---CCCccccccCCCC-C
Confidence            34567899999999999999999998873211 01123467899999999999999999998   765   2333333 8


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCcccc-CCCCCCChHHHHHH-HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC
Q 012618           84 TPLMVAAMNGKLSCVKKLIESGAFILN-FDSLQGRTCLHYAA-YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG  161 (460)
Q Consensus        84 tpL~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g  161 (460)
                      ||||+|+..|+.++|++|+++|+++.. ..+..|.||||+|+ ..|+.++|++|++.++                   .|
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------------------~~  225 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------------------ML  225 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------------------HH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------------------cc
Confidence            999999999999999999999988632 15567899999999 9999999999988653                   27


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcC---------------------------CHHHH
Q 012618          162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGG---------------------------SLECI  214 (460)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g---------------------------~~~~v  214 (460)
                      .||||+|+..|+.+++++|+++|++++...        +++++|+.+|                           ..+.+
T Consensus       226 ~taL~~Aa~~g~~evv~lL~~~ga~~~~~~--------~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~  297 (376)
T 2aja_A          226 AYAEIHEFEYGEKYVNPFIARHVNRLKEMH--------DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDI  297 (376)
T ss_dssp             HHHHHCTTTTTTTTHHHHHHHHHHHHHHHH--------TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHH
T ss_pred             chHHHHHHHCCCHHHHHHHHhcCccccccc--------HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHH
Confidence            789999999999999999999988653211        2333333333                           34455


Q ss_pred             HHHHHc---------CCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618          215 RELLAW---------GADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA  255 (460)
Q Consensus       215 ~~Ll~~---------gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga  255 (460)
                      ++|++.         |+++    ..+.|||++|+..|+.+++++|++.+.
T Consensus       298 ~~Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g~~e~v~lLl~~~~  343 (376)
T 2aja_A          298 RFLLSIPGIKALAPTATIP----GDANELLRLALRLGNQGACALLLSIPS  343 (376)
T ss_dssp             HHHHTSTTTGGGSSCCSST----TCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             HHHHhChhhhhhhccCCCC----CCccHHHHHHHHcCcHHHHHHHHcChH
Confidence            666653         3333    345689999999999999999998753

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.7e-30  Score=257.51  Aligned_cols=225  Identities=18%  Similarity=0.116  Sum_probs=148.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCcc--CCCCCCc
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGM-TSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDA--LNRYKQT   84 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~-~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~--~~~~g~t   84 (460)
                      +..|.||||+|+..|+.++|++|+++|+++... ....+ .||||+|+..|+.++|++|+++   |++++.  .|..|.|
T Consensus       125 ~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~---ga~~~~~~~d~~g~T  200 (376)
T 2aja_A          125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL---APTEATAMIQAENYY  200 (376)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS---CGGGHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc---CCccchhccCCCCCC
Confidence            446788999999999999999999999752110 01112 7999999999999999999999   999887  8888999


Q ss_pred             HHHHHH-HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCC-
Q 012618           85 PLMVAA-MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGA-  162 (460)
Q Consensus        85 pL~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~-  162 (460)
                      |||+|+ ..|+.++|++|++.|+        .|.||||+|+..|+.+++++|++.+++.......     +......|. 
T Consensus       201 pL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~-----l~~A~~~g~~  267 (376)
T 2aja_A          201 AFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDA-----FKLSNPDGVF  267 (376)
T ss_dssp             HHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTT-----TTTTSSSSCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHH-----HHHHHHCCCh
Confidence            999999 9999999999999764        2789999999999999999999998752110000     111111111 


Q ss_pred             ---CH---------HHHHHHc---CCHHHHHHHHHcCCc-cccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 012618          163 ---TP---------LHLAARQ---GWSECVHTLLDNGAL-ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ  226 (460)
Q Consensus       163 ---t~---------L~~A~~~---g~~~~v~~Ll~~ga~-~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~  226 (460)
                         ++         +...+..   +..+.+++|++.+.. ...........+.||||+|+..|+.++|++|++.|   ..
T Consensus       268 ~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~---~v  344 (376)
T 2aja_A          268 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP---SV  344 (376)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH---HH
T ss_pred             hhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh---HH
Confidence               11         1111122   235667777764321 11111222335679999999999999999999875   56


Q ss_pred             CCCCCCCHHHHHHHhChHHHHHhhCC
Q 012618          227 PDAFGRIPYAIALKYKHQACAALLNP  252 (460)
Q Consensus       227 ~d~~G~tpL~~A~~~~~~~i~~~Ll~  252 (460)
                      ++..+.|++.+|-..|+.+++++-+.
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (376)
T 2aja_A          345 LALTKANNYYINETGGRLDLRAVALE  370 (376)
T ss_dssp             HHSCC---------------------
T ss_pred             HHHHHHhccccccccccccHHHHHHH
Confidence            67889999999999999998876544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=9.6e-27  Score=197.19  Aligned_cols=134  Identities=26%  Similarity=0.289  Sum_probs=85.3

Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCc
Q 012618           72 YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFS  151 (460)
Q Consensus        72 ~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  151 (460)
                      +++++..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+. |+.+++++|++.+++          
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~----------   69 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE----------   69 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC----------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC----------
Confidence            3456666666666666666666666666666666655 4555566666666666 666666666666655          


Q ss_pred             cccccCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618          152 RFVNIRDES-GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD  223 (460)
Q Consensus       152 ~~v~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad  223 (460)
                        ++.+|.. |.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..++.+++++|+++|+|
T Consensus        70 --~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           70 --PNCADPATLTRPVHDAAREGFLDTLVVLHRAGA----RLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             --SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCC----CCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             --CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence              5666666 6666666666666666666666666    3444555666666666666666666666666654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=6.7e-27  Score=202.99  Aligned_cols=144  Identities=24%  Similarity=0.211  Sum_probs=90.7

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcccccc
Q 012618           77 ALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNI  156 (460)
Q Consensus        77 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~  156 (460)
                      ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+ .|+.+++++|++.+++            ++.
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~------------~~~   72 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE------------PNC   72 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC------------CCC
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC------------CCC
Confidence            34556677777777777777777777777666 555667777777764 6777777777777666            677


Q ss_pred             CCCCCCC-HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 012618          157 RDESGAT-PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY  235 (460)
Q Consensus       157 ~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL  235 (460)
                      +|..|.| |||+|+..|+.+++++|+++|+    +.+.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||.
T Consensus        73 ~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~  148 (156)
T 1bi7_B           73 ADPATLTRPVHDAAREGFLDTLVVLHRAGA----RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAA  148 (156)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHHHTC----CSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------
T ss_pred             cCCCCCcHHHHHHHHCCCHHHHHHHHHcCC----CCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCccc
Confidence            7777777 7777777777777777777777    4455666777888888777788888888888888777777777776


Q ss_pred             HHH
Q 012618          236 AIA  238 (460)
Q Consensus       236 ~~A  238 (460)
                      +.+
T Consensus       149 ~~~  151 (156)
T 1bi7_B          149 EGP  151 (156)
T ss_dssp             ---
T ss_pred             ccC
Confidence            643

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=1.2e-26  Score=196.61  Aligned_cols=130  Identities=26%  Similarity=0.313  Sum_probs=123.5

Q ss_pred             cCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccc
Q 012618          110 NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACS  189 (460)
Q Consensus       110 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  189 (460)
                      +..+..|.||||+|+..|+.+++++|++.+++            ++.+|..|.||||+|+. |+.+++++|+++|+    
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~----   68 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGAD------------PNALNRFGRRPIQVMMM-GSAQVAELLLLHGA----   68 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC----
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC------------cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC----
Confidence            67788999999999999999999999999987            89999999999999999 99999999999999    


Q ss_pred             CCCCCCCC-CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCC
Q 012618          190 STGGNGYP-GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE  256 (460)
Q Consensus       190 ~~~~~d~~-g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~  256 (460)
                      +.+..|.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++||+
T Consensus        69 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            55667778 99999999999999999999999999999999999999999999999999999998874

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=6.7e-27  Score=209.29  Aligned_cols=156  Identities=15%  Similarity=0.043  Sum_probs=85.1

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCccccCCCCCCChHHHH
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALN-RYKQTPLMVAAMNGKL----SCVKKLIESGAFILNFDSLQGRTCLHY  122 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-~~g~tpL~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~g~t~L~~  122 (460)
                      ++|+.|+..|+++.++.++..   +  ++..+ ..|+||||+|+.+++.    +++++|++.|+++ +..+..|+||||+
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~---~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~   81 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEK---G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFP   81 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHH---S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhc---C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence            445555555555554444443   2  12222 3345555555554442    2455555555544 4444455555555


Q ss_pred             HHHcCC------HHHHHHHHHhcCCCCCcccCCCccccccCCCCCC-CHHHHHHHcC-----CHHHHHHHHH-cCCcccc
Q 012618          123 AAYYGH------SDCLQALLTAARTSPVANTWGFSRFVNIRDESGA-TPLHLAARQG-----WSECVHTLLD-NGALACS  189 (460)
Q Consensus       123 A~~~g~------~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~-t~L~~A~~~g-----~~~~v~~Ll~-~ga~~~~  189 (460)
                      |+..++      .+++++|++.|++            +|.+|..|. ||||+|+..+     ..+++++|++ +|+    
T Consensus        82 a~~~~~~~~~~~~~iv~~Ll~~Gad------------in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga----  145 (186)
T 3t8k_A           82 LFQGGGNDITGTTELCKIFLEKGAD------------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL----  145 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCC------------SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC----
T ss_pred             HHHcCCcchhhHHHHHHHHHHCCCC------------CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC----
Confidence            554443      3556666666665            566666666 6666666633     2356666666 666    


Q ss_pred             CCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCC
Q 012618          190 STGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV  225 (460)
Q Consensus       190 ~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~  225 (460)
                      +++.+|..|.||||+|++.|+.++|++|+++..+.+
T Consensus       146 d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          146 QLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             CTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            445556666677777777777777766666544333

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=2.2e-26  Score=206.00  Aligned_cols=154  Identities=14%  Similarity=0.110  Sum_probs=138.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCH----HHHHHHHHhcCCCCCcccCCCccccccC
Q 012618           82 KQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS----DCLQALLTAARTSPVANTWGFSRFVNIR  157 (460)
Q Consensus        82 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~~~~~v~~~  157 (460)
                      ++++|+.|+..|+.+.++.++..+.+.  ..+..|+||||+|+..|+.    +++++|++.|++            +|.+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad------------vn~~   71 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD------------IKSR   71 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC------------SSCC
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC------------CCCC
Confidence            568999999999999999999988653  2235799999999999975    599999999998            8999


Q ss_pred             CCCCCCHHHHHHHcCC------HHHHHHHHHcCCccccCCCCCCCCCC-hHHHHHHhcC-----CHHHHHHHHH-cCCCC
Q 012618          158 DESGATPLHLAARQGW------SECVHTLLDNGALACSSTGGNGYPGS-TPLHFAARGG-----SLECIRELLA-WGADR  224 (460)
Q Consensus       158 d~~g~t~L~~A~~~g~------~~~v~~Ll~~ga~~~~~~~~~d~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~gad~  224 (460)
                      |..|+||||+|+..++      .+++++|+++|+    +++.+|..|. ||||+|+..+     +.+++++|++ +|+|+
T Consensus        72 d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga----din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~  147 (186)
T 3t8k_A           72 TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA----DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL  147 (186)
T ss_dssp             CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC----CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT
T ss_pred             CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC----CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC
Confidence            9999999999999987      689999999999    6667788999 9999999944     4679999999 99999


Q ss_pred             CCCCCCCCCHHHHHHHhChHHHHHhhCCC
Q 012618          225 VQPDAFGRIPYAIALKYKHQACAALLNPS  253 (460)
Q Consensus       225 ~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~  253 (460)
                      +.+|..|+||||+|++.++.+++++|.++
T Consensus       148 ~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          148 LIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             TCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=7.6e-26  Score=196.33  Aligned_cols=139  Identities=27%  Similarity=0.296  Sum_probs=89.0

Q ss_pred             CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCh-HHHH
Q 012618           44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRT-CLHY  122 (460)
Q Consensus        44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~  122 (460)
                      ..|.||||+|+..|+.++|++|+++   |++++..+..|.||||+|+ .|+.+++++|++.|+++ +..+..|+| |||+
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~   84 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEA---GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD   84 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTT---TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence            4566777777777777777777776   6777777777777777764 67777777777777766 556666776 7777


Q ss_pred             HHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHH
Q 012618          123 AAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPL  202 (460)
Q Consensus       123 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpL  202 (460)
                      |+..|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+..+..|.||.
T Consensus        85 A~~~~~~~~v~~Ll~~ga~------------~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~~  148 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGAR------------LDVRDAWGRLPVDLAEELGHRDVARYLRAAAG----GTRGSNHARIDAA  148 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCC------------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred             HHHCCCHHHHHHHHHcCCC------------CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCC----CCCccCcCcCccc
Confidence            7777777777777777766            66677777777777777777777777777777    4444555666666


Q ss_pred             H
Q 012618          203 H  203 (460)
Q Consensus       203 h  203 (460)
                      +
T Consensus       149 ~  149 (156)
T 1bi7_B          149 E  149 (156)
T ss_dssp             -
T ss_pred             c
Confidence            5

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=8.6e-25  Score=181.56  Aligned_cols=126  Identities=44%  Similarity=0.621  Sum_probs=119.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCC
Q 012618          115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN  194 (460)
Q Consensus       115 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  194 (460)
                      +|+||||+|+..|+.+++++|++.+.+            ++..+..|.||||+|+..++.+++++|+++|+    +.+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~   64 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA----DVNAK   64 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC------------CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC----CCccc
Confidence            489999999999999999999999887            78899999999999999999999999999999    55667


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCC
Q 012618          195 GYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAE  256 (460)
Q Consensus       195 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~  256 (460)
                      +..|.||||+|+..++.+++++|+++|++++.+|..|.|||++|+..++.+++++|+++||+
T Consensus        65 ~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            78899999999999999999999999999999999999999999999999999999999974

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=1.9e-24  Score=179.44  Aligned_cols=125  Identities=49%  Similarity=0.685  Sum_probs=60.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC
Q 012618           82 KQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG  161 (460)
Q Consensus        82 g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g  161 (460)
                      |+||||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.+.+            ++.+|..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g   68 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNG   68 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTS
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC------------CcccCCCC
Confidence            444444444444444444444444443 33334444444444444444444444444444            44444455


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618          162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD  223 (460)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad  223 (460)
                      .||||+|+..++.+++++|+++|+    +.+..|..|.||||+|+..++.+++++|+++|+|
T Consensus        69 ~t~l~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           69 RTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHcChHHHHHHHHHcCC----CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            555555555555555555555554    2333444455555555555555555555555543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=7.4e-25  Score=185.49  Aligned_cols=126  Identities=36%  Similarity=0.438  Sum_probs=118.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCC
Q 012618          113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTG  192 (460)
Q Consensus       113 ~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  192 (460)
                      ...+.||||+|+..|+.+++++|++.+.+            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~   74 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD------------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA----DVN   74 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTT
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCC
Confidence            35688999999999999999999999987            89999999999999999999999999999999    556


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCC
Q 012618          193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS  254 (460)
Q Consensus       193 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~g  254 (460)
                      ..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++|
T Consensus        75 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           75 AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            67889999999999999999999999999999999999999999999999999999998775

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.6e-24  Score=183.40  Aligned_cols=125  Identities=29%  Similarity=0.373  Sum_probs=100.4

Q ss_pred             CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618           44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  123 (460)
                      ..+.||||+|+..|+.+++++|++.   +++++..|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||+|
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   87 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMAN---GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLA   87 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence            4567888888888888888888887   7888888888888888888888888888888888876 66667788888888


Q ss_pred             HHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q 012618          124 AYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNG  184 (460)
Q Consensus       124 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  184 (460)
                      +..|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~------------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGAD------------VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCC------------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            888888888888888776            6777888888888888888888888888765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=4.1e-25  Score=187.20  Aligned_cols=129  Identities=30%  Similarity=0.467  Sum_probs=110.7

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccC
Q 012618          111 FDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSS  190 (460)
Q Consensus       111 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  190 (460)
                      ..+..|+||||+|+..|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|+    +
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~   68 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD------------PNVKDHAGWTPLHEACNHGHLKVVELLLQHKA----L   68 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----C
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----c
Confidence            4567888999999988999999999888877            78888899999999999999999999999998    5


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618          191 TGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA  255 (460)
Q Consensus       191 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga  255 (460)
                      .+..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+..+++++|.+.+.
T Consensus        69 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            56677889999999999999999999999999999999999999999999999999998877664

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=2.3e-25  Score=198.63  Aligned_cols=109  Identities=29%  Similarity=0.379  Sum_probs=52.6

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCC-C
Q 012618           81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-E  159 (460)
Q Consensus        81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d-~  159 (460)
                      .|.||||+|+..|+.+++++|++ |+++ +..+..|+||||+|+..|+.+++++|++.+++            ++.++ .
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------~~~~~~~  108 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGAD------------LDHRDMR  108 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCSS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCcCCCC
Confidence            34455555555555555555544 4443 33444455555555555555555555554444            34444 4


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHh
Q 012618          160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAAR  207 (460)
Q Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~  207 (460)
                      .|.||||+|+..|+.+++++|+++|+    +.+.+|..|.||||+|++
T Consensus       109 ~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A          109 GGLTALHMAAGYVRPEVVEALVELGA----DIEVEDERGLTALELARE  152 (183)
T ss_dssp             SSCCHHHHHHHTTCHHHHHHHHHHTC----CTTCCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHhcCcHHHHHHHHHcCC----CCcCCCCCCCCHHHHHHH
Confidence            45555555555555555555555554    333344445555555543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=2.1e-24  Score=182.77  Aligned_cols=131  Identities=26%  Similarity=0.307  Sum_probs=81.8

Q ss_pred             CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCcc
Q 012618           73 TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSR  152 (460)
Q Consensus        73 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~  152 (460)
                      +++ .+|..|+||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|+.+++++|++.+++           
T Consensus         2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----------   68 (137)
T 3c5r_A            2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-----------   68 (137)
T ss_dssp             --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred             CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-----------
Confidence            344 45566666666666666666666666666665 55556666666666666666666666666655           


Q ss_pred             ccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 012618          153 FVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG  221 (460)
Q Consensus       153 ~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g  221 (460)
                       ++.+|..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||+|+..+..+++++|.+.+
T Consensus        69 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           69 -VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA----SRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             -TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             -ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence             56666666677777776666677777776666    44455666667777776666666666665543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=200.46  Aligned_cols=142  Identities=20%  Similarity=0.207  Sum_probs=123.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccccC-----CCCCCChHHHHHHHc---CCHHHHHHHHHhcCCCCCcccCCCcc
Q 012618           81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNF-----DSLQGRTCLHYAAYY---GHSDCLQALLTAARTSPVANTWGFSR  152 (460)
Q Consensus        81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~-----~~~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~  152 (460)
                      ...++|+.|+..|+.+.++.|++.|+++...     .+..|+||||+|+..   |+.+++++|++.+++           
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-----------  218 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-----------  218 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-----------
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-----------
Confidence            3457899999999999999999999998432     578999999999997   899999999999998           


Q ss_pred             ccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012618          153 FVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR  232 (460)
Q Consensus       153 ~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~  232 (460)
                       +|.+|..|.||||+|+..|+.+++++|+++|+    +++.+|..|.||||+|+..++.+++++|+++|++      .|.
T Consensus       219 -vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~  287 (301)
T 2b0o_E          219 -LDAKAADGNTALHYAALYNQPDCLKLLLKGRA----LVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFA  287 (301)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTS
T ss_pred             -CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCC
Confidence             89999999999999999999999999999999    5667888999999999999999999999999987      578


Q ss_pred             CHHHHHHHhChH
Q 012618          233 IPYAIALKYKHQ  244 (460)
Q Consensus       233 tpL~~A~~~~~~  244 (460)
                      ||||+|+.+|+.
T Consensus       288 tpLh~A~~~g~~  299 (301)
T 2b0o_E          288 FPLHVDYSWVIS  299 (301)
T ss_dssp             SCCC--------
T ss_pred             ChhHHHHhcCCc
Confidence            999999988763

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.7e-23  Score=201.56  Aligned_cols=139  Identities=24%  Similarity=0.302  Sum_probs=123.5

Q ss_pred             ccHHHHHHHcCcHHHHHHHHhccCCCCCCcc------CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCccccCCCCCCC
Q 012618           47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDA------LNRYKQTPLMVAAMN---GKLSCVKKLIESGAFILNFDSLQGR  117 (460)
Q Consensus        47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~------~~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~  117 (460)
                      .++|+.|+..|+.+.|+.|++.   +++++.      .+..|.||||+|+..   ++.+++++|+++|+++ +..|..|+
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~---g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~  227 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFAN---GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN  227 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT---TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCC
T ss_pred             HHHHhhhhhccCHHHHHHHHhc---CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence            4679999999999999999998   999988      689999999999997   8999999999999998 77889999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCC
Q 012618          118 TCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP  197 (460)
Q Consensus       118 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~  197 (460)
                      ||||+|+..|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|++          .
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad------------~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------~  285 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRAL------------VGTVNEAGETALDIARKKHHKECEELLEQAQAG----------T  285 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC------------CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------T
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------C
Confidence            999999999999999999999998            899999999999999999999999999999983          4


Q ss_pred             CChHHHHHHhcCCH
Q 012618          198 GSTPLHFAARGGSL  211 (460)
Q Consensus       198 g~TpLh~A~~~g~~  211 (460)
                      |.||||+|+..|+.
T Consensus       286 g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          286 FAFPLHVDYSWVIS  299 (301)
T ss_dssp             TSSCCC--------
T ss_pred             CCChhHHHHhcCCc
Confidence            78999999998764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=1.4e-23  Score=196.15  Aligned_cols=171  Identities=26%  Similarity=0.284  Sum_probs=134.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618           11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA   90 (460)
Q Consensus        11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~   90 (460)
                      +.+++++++..|+.+.+..+...+.++     +.+|.||||+|+..|+.++|++|++    ++++|.+|..|+||||+|+
T Consensus        15 ~~~~~l~~~~~g~~~~~~~~~~~~~~~-----~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~d~~g~t~L~~A~   85 (244)
T 3ui2_A           15 GAMEYLIEWKDGHSPSWVPSSYIAADV-----VSEYETPWWTAARKADEQALSQLLE----DRDVDAVDENGRTALLFVA   85 (244)
T ss_dssp             TEEEEEEEESSCCCCEEEEGGGSCHHH-----HHHHHHHHHHHHTTTCHHHHHHTTT----TCCTTCBCTTSCBHHHHHH
T ss_pred             CccHHHHHHHcCCCccccccccccccc-----ccCCCCHHHHHHHcCCHHHHHHHHc----CCCCCCcCCCCCCHHHHHH
Confidence            334444444555554444433333333     1357899999999999999999998    6788999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH
Q 012618           91 MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR  170 (460)
Q Consensus        91 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~  170 (460)
                      ..|+.++|++|++.|+++....+..|+||||+|+..|+.+++++|++.+++            ++.+|..|.||||+|+.
T Consensus        86 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~------------~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A           86 GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD------------IEVEDERGLTALELARE  153 (244)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTCCCHHHHHHH
T ss_pred             HCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC------------CCCCCCCCCcHHHHHHH
Confidence            999999999999999988444447899999999999999999999999888            78899999999999986


Q ss_pred             cCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618          171 QGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD  223 (460)
Q Consensus       171 ~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad  223 (460)
                      .+..                     ..+.||||+|+..|+.+++++|++++.+
T Consensus       154 ~~~~---------------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          154 ILKT---------------------TPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHTT---------------------CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHhc---------------------cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            3221                     2467999999999999999999987654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=6.9e-25  Score=204.95  Aligned_cols=169  Identities=21%  Similarity=0.195  Sum_probs=143.3

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618           45 GKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA  124 (460)
Q Consensus        45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  124 (460)
                      .+.+++.++...|+.+.+..+...   +.+   .+..|.||||+|+..|+.+++++|++ |+++ +..+..|+||||+|+
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~---~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~   85 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYI---AAD---VVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA   85 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGS---CHH---HHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHH
T ss_pred             CCccHHHHHHHcCCCccccccccc---ccc---cccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHH
Confidence            345667777777776666554443   322   34578999999999999999999999 8887 778889999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCCCcccCCCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHH
Q 012618          125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH  203 (460)
Q Consensus       125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh  203 (460)
                      ..|+.+++++|++.+++            ++.++ ..|.||||+|+..|+.+++++|+++|+    +.+..|..|.||||
T Consensus        86 ~~g~~~~v~~Ll~~ga~------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~t~l~  149 (244)
T 3ui2_A           86 GLGSDKCVRLLAEAGAD------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGA----DIEVEDERGLTALE  149 (244)
T ss_dssp             HHTCHHHHHHHHHTTCC------------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTCCCHHH
T ss_pred             HCCCHHHHHHHHHcCCC------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCcHHH
Confidence            99999999999999998            78888 889999999999999999999999999    55677889999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCC
Q 012618          204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSS  254 (460)
Q Consensus       204 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~g  254 (460)
                      +|+..+                 ....+.|||++|+..|+.+++++|++++
T Consensus       150 ~A~~~~-----------------~~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          150 LAREIL-----------------KTTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHH-----------------TTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----------------hccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            998622                 1256889999999999999999998753

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=3.3e-23  Score=184.61  Aligned_cols=140  Identities=30%  Similarity=0.355  Sum_probs=123.9

Q ss_pred             CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618           44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  123 (460)
                      .+|.||||+|+..|+.+++++|++    +++++.+|..|+||||+|+..|+.+++++|++.|+++....+..|+||||+|
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            367899999999999999999998    6789999999999999999999999999999999998444448899999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHH
Q 012618          124 AYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH  203 (460)
Q Consensus       124 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh  203 (460)
                      +..|+.+++++|++.+++            ++.+|..|.||||+|+..++.                     ..+.+||+
T Consensus       118 ~~~~~~~~v~~Ll~~ga~------------~~~~d~~g~tpl~~A~~~~~~---------------------~~~~~~l~  164 (183)
T 3deo_A          118 AGYVRPEVVEALVELGAD------------IEVEDERGLTALELAREILKT---------------------TPKGNPMQ  164 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCC------------TTCCCTTSCCHHHHHHHHHHT---------------------CCCCSHHH
T ss_pred             HhcCcHHHHHHHHHcCCC------------CcCCCCCCCCHHHHHHHhccC---------------------cccccHHH
Confidence            999999999999999988            889999999999999975321                     13569999


Q ss_pred             HHHhcCCHHHHHHHHHc
Q 012618          204 FAARGGSLECIRELLAW  220 (460)
Q Consensus       204 ~A~~~g~~~~v~~Ll~~  220 (460)
                      +|+..|+.+++++|.++
T Consensus       165 ~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          165 FGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCHHHHHHHHHHh
Confidence            99999999999999765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=4.2e-23  Score=171.41  Aligned_cols=117  Identities=26%  Similarity=0.288  Sum_probs=106.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCC
Q 012618          114 LQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGG  193 (460)
Q Consensus       114 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~  193 (460)
                      ..|.||||+|+..|+.+++++|++.+.+            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~~~   68 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGED------------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA----DINA   68 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCC------------TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC----CTTC
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCC------------cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCc
Confidence            4688999999999999999999999887            89999999999999999999999999999999    5667


Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHH
Q 012618          194 NGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC  246 (460)
Q Consensus       194 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i  246 (460)
                      .|..|+||||+|+..++.+++++|+++|++++.+|..|+|||++|...+..++
T Consensus        69 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           69 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            78899999999999999999999999999999999999999999955444443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.1e-23  Score=193.57  Aligned_cols=131  Identities=24%  Similarity=0.197  Sum_probs=81.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCccccCCC
Q 012618          114 LQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN-GALACSSTG  192 (460)
Q Consensus       114 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~  192 (460)
                      ..|.||||+|+..|+.+++++|++.+.+            ++.+|..|.||||+|+..|+.++|++|++. |+    +.+
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~----~~~  134 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVG------------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI----ELN  134 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC----CCC
T ss_pred             cccccccccccccCcHHHHHHHHhCCCC------------ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC----Ccc
Confidence            3566667777666666677766666655            566666677777777777777777777766 66    445


Q ss_pred             CCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618          193 GNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVW  260 (460)
Q Consensus       193 ~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~  260 (460)
                      ..|..|.||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..++.++++.|+..++.....
T Consensus       135 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~  202 (222)
T 3ehr_A          135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS  202 (222)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence            55666677777777777777777777777777777777777777777777777777777766655543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=3.8e-23  Score=189.93  Aligned_cols=133  Identities=26%  Similarity=0.342  Sum_probs=107.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCC-----CCChHHHHHHHcCCHHHHHHHHHh-cCCCCCcccCCCc
Q 012618           78 LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSL-----QGRTCLHYAAYYGHSDCLQALLTA-ARTSPVANTWGFS  151 (460)
Q Consensus        78 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-----~g~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~  151 (460)
                      .+..|.||||+|+..|+.+++++|++.|+      +.     .|+||||+|+..|+.+++++|++. +++          
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----------  132 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRV------GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE----------  132 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC----------
T ss_pred             cccccccccccccccCcHHHHHHHHhCCC------CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC----------
Confidence            45678999999999999999999999875      34     378999999999999999999998 777          


Q ss_pred             cccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Q 012618          152 RFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFG  231 (460)
Q Consensus       152 ~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G  231 (460)
                        ++.+|..|.||||+|+..|+.+++++|+++|+    +.+.+|..|.||||+|+..++.++++.|++.|++.+..+..+
T Consensus       133 --~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          133 --LNQQNKLGDTALHAAAWKGYADIVQLLLAKGA----RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             --CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC----CSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             --ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence              89999999999999999999999999999999    566778899999999999999999999999999998877665


Q ss_pred             C
Q 012618          232 R  232 (460)
Q Consensus       232 ~  232 (460)
                      +
T Consensus       207 ~  207 (222)
T 3ehr_A          207 Y  207 (222)
T ss_dssp             -
T ss_pred             h
Confidence            4

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=6.3e-22  Score=188.48  Aligned_cols=131  Identities=24%  Similarity=0.235  Sum_probs=76.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHc---CCHHHHHHHHHcCCccccCCCC
Q 012618          117 RTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ---GWSECVHTLLDNGALACSSTGG  193 (460)
Q Consensus       117 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~  193 (460)
                      .++|+.|+..|+.+.++.+++.+.+.....      .++..|..|.||||+|+..   |+.+++++|+++|+    +++.
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga----~in~  200 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKI------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG----NLDK  200 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBC------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS----CTTC
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhc------cccccccCCCCcchHHHHhcccchHHHHHHHHHCCC----Cccc
Confidence            345555555555555555555554432111      1344455566666666665   56666666666666    3344


Q ss_pred             CCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCC
Q 012618          194 NGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEP  257 (460)
Q Consensus       194 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~  257 (460)
                      +|..|+||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..++.+++++|+++|++.
T Consensus       201 ~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          201 QTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4555666666666666666666666666666666666666666666666666666666665543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=3.6e-22  Score=190.13  Aligned_cols=198  Identities=19%  Similarity=0.122  Sum_probs=138.7

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHH
Q 012618            7 CRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPL   86 (460)
Q Consensus         7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL   86 (460)
                      .+..+.+.|+.+...|+..+.+++...-+....... ..+...    ......-..+++...+  ....+.......++|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP-~~~s~~----~~~~~fI~aKYl~~~f--~~~~~~~~~~~l~~l  134 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKP-NPGSDM----IARKDYITAKYMERRY--ARKKHADTAAKLHSL  134 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSC-CTTCCH----HHHHHHHHHHHTTCTT--SCCCSSSHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCC-CCCCCH----HHHHHHHHHHHHHhhc--ccccccccchhhhhh
Confidence            355667777777777777766655443322211110 011111    1222222333444432  111222222345799


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccc-----cCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC
Q 012618           87 MVAAMNGKLSCVKKLIESGAFIL-----NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG  161 (460)
Q Consensus        87 ~~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g  161 (460)
                      +.|+..|+.+.++.+++.|+++.     +..+..|+||||+|+..++..-++.+--.-         .....+|.+|..|
T Consensus       135 ~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll---------~~ga~in~~d~~g  205 (278)
T 1dcq_A          135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV---------QNSGNLDKQTGKG  205 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH---------HHCSCTTCCCTTC
T ss_pred             hhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHH---------HCCCCccccCCCC
Confidence            99999999999999999999863     444789999999999988644444432221         2345688999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q 012618          162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADR  224 (460)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~  224 (460)
                      .||||+|+..|+.++|++|+++|+    +++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       206 ~TpLh~A~~~g~~~~v~~Ll~~ga----d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          206 STALHYCCLTDNAECLKLLLRGKA----SIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC----CCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999999    66777889999999999999999999999999864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=1.6e-22  Score=167.80  Aligned_cols=108  Identities=31%  Similarity=0.437  Sum_probs=51.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHH
Q 012618           10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA   89 (460)
Q Consensus        10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A   89 (460)
                      .|.|+||+|+..|+.++|++|++.+++++..  +..|.||||+|+..|+.+++++|++.   +++++.+|..|+||||+|
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSA   80 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSC--CTTSSCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCcc--CCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCCCCCHHHHH
Confidence            3444555555555555555555544444221  23444555555555555555555544   444444444455555555


Q ss_pred             HHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618           90 AMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        90 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  123 (460)
                      +..|+.+++++|+++|+++ +..+..|.||||+|
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHC
T ss_pred             HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHh
Confidence            5555555555555544444 34444444555444

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=1.6e-21  Score=192.35  Aligned_cols=144  Identities=23%  Similarity=0.213  Sum_probs=73.0

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHcCCccccCCC--CCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccC
Q 012618           81 YKQTPLMVAAMN-GKLSCVKKLIESGAFILNFDS--LQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR  157 (460)
Q Consensus        81 ~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~~~--~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~  157 (460)
                      .+.|+||.|+.. ++.+++++|++.|+++ +..+  ..|.||||+|+..|+.+++++|++.+++            +|.+
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad------------vn~~  264 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN------------VNQA  264 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------TTCC
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC------------CCCC
Confidence            344566666665 6666666666666655 3333  4556666666666666666666666555            5556


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcC---CCCCCCCCCCCCH
Q 012618          158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG---ADRVQPDAFGRIP  234 (460)
Q Consensus       158 d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~~d~~G~tp  234 (460)
                      |..|.||||+|+..|+.+++++||++|+    +.+..|..|.||||+|+..++.+++++|+..+   ++....+..+.|+
T Consensus       265 d~~G~TpLh~A~~~g~~~~v~~LL~~Ga----d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~  340 (368)
T 3jue_A          265 DSAGRGPLHHATILGHTGLACLFLKRGA----DLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETY  340 (368)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHCcC----CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCH
Confidence            6666666666666666666666666665    33444555666666666666666666666554   2223334455556


Q ss_pred             HHHHHHh
Q 012618          235 YAIALKY  241 (460)
Q Consensus       235 L~~A~~~  241 (460)
                      ++++...
T Consensus       341 l~i~~~~  347 (368)
T 3jue_A          341 LDIFRDF  347 (368)
T ss_dssp             -------
T ss_pred             HHHHHHH
Confidence            5555444

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=3.5e-21  Score=190.01  Aligned_cols=128  Identities=27%  Similarity=0.254  Sum_probs=113.7

Q ss_pred             CCCCCChHHHHHHHc-CCHHHHHHHHHhcCCCCCcccCCCccccccCC--CCCCCHHHHHHHcCCHHHHHHHHHcCCccc
Q 012618          112 DSLQGRTCLHYAAYY-GHSDCLQALLTAARTSPVANTWGFSRFVNIRD--ESGATPLHLAARQGWSECVHTLLDNGALAC  188 (460)
Q Consensus       112 ~~~~g~t~L~~A~~~-g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~  188 (460)
                      ....+.|+||.|+.. ++.+++++|++.+++            ++..+  ..|.||||+|+..|+.++|++|+++|+   
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad------------vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga---  259 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGAD------------VNWVNGGQDNATPLIQATAANSLLACEFLLQNGA---  259 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCC------------TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC---
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCC------------CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCC---
Confidence            344677999999999 999999999999988            77777  889999999999999999999999999   


Q ss_pred             cCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCC
Q 012618          189 SSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSA  255 (460)
Q Consensus       189 ~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga  255 (460)
                       +++..|..|+||||+|+..|+.++|++|+++|++++..|..|.||||+|+..++.+++++|+..+.
T Consensus       260 -dvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          260 -NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             -CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             -CCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence             556678889999999999999999999999999999999999999999999999999999976653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=6.2e-21  Score=150.08  Aligned_cols=93  Identities=44%  Similarity=0.614  Sum_probs=87.4

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 012618          160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL  239 (460)
Q Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~  239 (460)
                      +|+||||+|+..|+.+++++|+++|+    +.+.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~----~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            48999999999999999999999999    56677889999999999999999999999999999999999999999999


Q ss_pred             HhChHHHHHhhCCCCCC
Q 012618          240 KYKHQACAALLNPSSAE  256 (460)
Q Consensus       240 ~~~~~~i~~~Ll~~ga~  256 (460)
                      ..++.+++++|+++||+
T Consensus        77 ~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           77 RNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HTTCHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHcCCC
Confidence            99999999999999974

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=2.7e-20  Score=146.37  Aligned_cols=93  Identities=49%  Similarity=0.715  Sum_probs=86.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCC
Q 012618          115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN  194 (460)
Q Consensus       115 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  194 (460)
                      +|+||||+|+..|+.+++++|++.+++            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+.+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga----~~~~~   64 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA----DVNAK   64 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC------------CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCcc
Confidence            489999999999999999999999988            89999999999999999999999999999999    56677


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618          195 GYPGSTPLHFAARGGSLECIRELLAWGAD  223 (460)
Q Consensus       195 d~~g~TpLh~A~~~g~~~~v~~Ll~~gad  223 (460)
                      |..|.||||+|+..|+.+++++|+++|++
T Consensus        65 d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           65 DKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            88999999999999999999999999985

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.1e-20  Score=154.56  Aligned_cols=109  Identities=38%  Similarity=0.486  Sum_probs=90.3

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccC
Q 012618          111 FDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSS  190 (460)
Q Consensus       111 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~  190 (460)
                      .+|..|+||||+|+..|+.+++++|++.+++            ++.+|..|.||||+|+..++.+++++|+++|+    +
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~------------~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~   67 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA----D   67 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC------------SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC----C
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC----C
Confidence            4567888888888888888888888888877            78888888888888888888888888888888    4


Q ss_pred             CCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 012618          191 TGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY  235 (460)
Q Consensus       191 ~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL  235 (460)
                      .+..|..|.||||+|+..++.+++++|+++|++++..+..|.+|-
T Consensus        68 ~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            556677888888888888888888888888888888888888774

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.2e-19  Score=148.32  Aligned_cols=94  Identities=32%  Similarity=0.365  Sum_probs=51.4

Q ss_pred             CCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618           44 YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        44 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  123 (460)
                      .+|.||||+|+..|+.+++++|++.   +++++..|..|.||||+|+..++.+++++|++.|+++ +..+..|+||||+|
T Consensus         7 ~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            7 KDGNTPLHNAAKNGHAEEVKKLLSK---GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA   82 (115)
T ss_dssp             CSSCCHHHHHHHHTCHHHHHHHTTT---TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence            3455555555555555555555555   5555555555555555555555555555555555554 44444555555555


Q ss_pred             HHcCCHHHHHHHHHhcCC
Q 012618          124 AYYGHSDCLQALLTAART  141 (460)
Q Consensus       124 ~~~g~~~iv~~Ll~~~~~  141 (460)
                      +..|+.+++++|++.|++
T Consensus        83 ~~~~~~~~~~~Ll~~ga~  100 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGAD  100 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSS
T ss_pred             HHCCCHHHHHHHHHcCCC
Confidence            555555555555555554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=6.8e-18  Score=137.04  Aligned_cols=94  Identities=35%  Similarity=0.486  Sum_probs=84.6

Q ss_pred             ccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 012618          153 FVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGR  232 (460)
Q Consensus       153 ~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~  232 (460)
                      .....|.+|.|+||+|+..|+.+++++|+++|+    +.+.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus        16 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~   91 (110)
T 2zgd_A           16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGA----DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK   91 (110)
T ss_dssp             ------CCHHHHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccccCCccchHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Confidence            367788999999999999999999999999999    5566788999999999999999999999999999999999999


Q ss_pred             CHHHHHHHhChHHHHHhh
Q 012618          233 IPYAIALKYKHQACAALL  250 (460)
Q Consensus       233 tpL~~A~~~~~~~i~~~L  250 (460)
                      ||||+|+..++.+++++|
T Consensus        92 tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           92 TAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CHHHHHHHHTCHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHh
Confidence            999999999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=3.8e-17  Score=132.58  Aligned_cols=89  Identities=30%  Similarity=0.366  Sum_probs=73.7

Q ss_pred             CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHH
Q 012618           43 GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHY  122 (460)
Q Consensus        43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~  122 (460)
                      +.+|.|+||+|+..|+.+++++|++.   +++++.+|..|.||||+|+..|+.+++++|+++|+++ +..+..|+||||+
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~   96 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMAN---GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDI   96 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHH
Confidence            35677888888888888888888888   8888888888888888888888888888888888877 6677788888888


Q ss_pred             HHHcCCHHHHHHH
Q 012618          123 AAYYGHSDCLQAL  135 (460)
Q Consensus       123 A~~~g~~~iv~~L  135 (460)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            8888888888776

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=1.5e-12  Score=94.96  Aligned_cols=54  Identities=22%  Similarity=0.573  Sum_probs=46.9

Q ss_pred             CCCCCccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeec
Q 012618          317 EASDVELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARII  385 (460)
Q Consensus       317 ~~~~~~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~  385 (460)
                      ...+...|.||++...+++++||||. +|..|+..+               ..||+||.+|..++.+..+
T Consensus        11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~CR~~i~~~~~i~~~   65 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF---------------QQCPMCRQFVQESFALSGP   65 (68)
T ss_dssp             SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC---------------SSCTTTCCCCCCEECCCSS
T ss_pred             cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC---------------CCCCCCCcchhceEEeecC
Confidence            34456789999999999999999999 899999765               7899999999998887753

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.21  E-value=8e-12  Score=90.08  Aligned_cols=54  Identities=30%  Similarity=0.527  Sum_probs=46.2

Q ss_pred             CCccCcccccCCCccEec--CCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          320 DVELCCICFENLCTIEIK--PCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~--~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      +...|.||++...+++++  ||||. +|..|+..|-..+           ..||+||++|..++.+.+
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~i~~   63 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-----------KPCPVCRQPIQMIVLTYF   63 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-----------CCCTTTCCCCCEEEEEEC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-----------CcCCCcCcchhceEeeec
Confidence            445799999999999987  99999 6999999984322           579999999999988875

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.20  E-value=1.1e-11  Score=89.14  Aligned_cols=54  Identities=26%  Similarity=0.515  Sum_probs=45.4

Q ss_pred             CCccCcccccCCCccEec--CCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          320 DVELCCICFENLCTIEIK--PCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~--~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      ....|.||++...+.+++  ||||. +|..|+..+...+           ..||+||++|..++++.+
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~i~~   62 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-----------ASCPICKKEIQLVIKVFI   62 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-----------CBCTTTCCBCCEEEEEEE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-----------CcCCCcCchhhceEEEec
Confidence            346799999999998777  99998 7999999983222           589999999999988864

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.08  E-value=4.5e-11  Score=89.93  Aligned_cols=50  Identities=30%  Similarity=0.797  Sum_probs=44.9

Q ss_pred             ccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeecC
Q 012618          322 ELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIIN  386 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~~  386 (460)
                      ..|.||++...+++++||||. +|..|+..+               ..||+||.+|...+.+.++.
T Consensus        19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~i~~p~   69 (79)
T 2yho_A           19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL---------------QSCPVCRSRVEHVQHVYLPT   69 (79)
T ss_dssp             TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC---------------SBCTTTCCBCCEEEECBCTT
T ss_pred             CEeEEeCcccCcEEEECCCCHHHHHHHHHhc---------------CcCCCCCchhhCeEEEEeCc
Confidence            469999999999999999999 899999666               68999999999998888654

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=3.3e-10  Score=84.08  Aligned_cols=54  Identities=24%  Similarity=0.605  Sum_probs=43.8

Q ss_pred             CCCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          317 EASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       317 ~~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ...+...|.||++...+++.++|||.||..|+..|..        .......||+||.+|..
T Consensus        16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~--------~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGE--------TSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCS--------SSCSCCCCSSSCCCCCC
T ss_pred             hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHH--------cCCCCCCCCCCCCcCCc
Confidence            3445678999999999999999999999999999932        12234789999999854

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.03  E-value=8.3e-11  Score=87.46  Aligned_cols=49  Identities=33%  Similarity=0.749  Sum_probs=43.9

Q ss_pred             CccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          321 VELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      ...|.||++...+++++||||. ||..|+..|               ..||+||.+|...+.+.+
T Consensus        24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~i~~   73 (74)
T 4ic3_A           24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQKILM   73 (74)
T ss_dssp             HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---------------SBCTTTCCBCSEEEECBC
T ss_pred             CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---------------ccCCCcCcCccCcEEEee
Confidence            3469999999999999999999 999999666               789999999999887764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.1e-10  Score=87.18  Aligned_cols=49  Identities=33%  Similarity=0.742  Sum_probs=43.2

Q ss_pred             CccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          321 VELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      ...|.||++...+++++||||. ||..|+..+               ..||+||.+|...+.+.+
T Consensus        25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~i~~   74 (75)
T 2ecg_A           25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQKIFM   74 (75)
T ss_dssp             HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC---------------SBCTTTCCBCCCCCBCCC
T ss_pred             CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC---------------CCCccCCceecCcEEEec
Confidence            3469999999999999999999 999999665               789999999998877654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=4.5e-10  Score=82.83  Aligned_cols=50  Identities=26%  Similarity=0.558  Sum_probs=42.5

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      .+...|.||++...+.+.+||||.||..|+..|....           ..||+||..|...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-----------KRCALCRQEIPED   62 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-----------SBCSSSCCBCCHH
T ss_pred             CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-----------CcCcCcCchhCHh
Confidence            3456799999999999999999999999999984332           7899999998653

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.93  E-value=8.5e-10  Score=80.57  Aligned_cols=53  Identities=28%  Similarity=0.691  Sum_probs=43.7

Q ss_pred             CCccCcccccCCCcc-EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618          320 DVELCCICFENLCTI-EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR  383 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~-~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~  383 (460)
                      +...|.||++...+. +.+||||.||..|...|....           ..||+||.++..++...
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEECCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-----------CcCcCCChhhHhhhhcc
Confidence            345799999999884 789999999999999995433           68999999998765543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=1.3e-09  Score=82.59  Aligned_cols=49  Identities=22%  Similarity=0.512  Sum_probs=42.5

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      .+...|.||++...+++.++|||.||..|+..|....           ..||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~   61 (81)
T 2csy_A           13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT-----------PRCYICDQPTGG   61 (81)
T ss_dssp             CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC-----------SBCSSSCCBCCS
T ss_pred             CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC-----------CcCCCcCccccc
Confidence            3456799999999999999999999999999995432           689999999974

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=2.1e-09  Score=79.46  Aligned_cols=50  Identities=24%  Similarity=0.531  Sum_probs=42.4

Q ss_pred             CCCccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          319 SDVELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      .+...|.||++...+.+.+ +|||.||..|+..|....           ..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~   63 (72)
T 2djb_A           13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-----------NRCPKCNIVVHQT   63 (72)
T ss_dssp             CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-----------SSCTTTCCCCCSS
T ss_pred             CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-----------CcCCCcCcccCcc
Confidence            3456799999999998886 999999999999996443           7899999998654

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.87  E-value=1e-09  Score=80.71  Aligned_cols=52  Identities=31%  Similarity=0.776  Sum_probs=42.6

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeE
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAA  382 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~  382 (460)
                      .+...|.||++...+ +.+||||.||..|+..|..           ....||+||.+|......
T Consensus        13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-----------~~~~CP~Cr~~~~~~~~~   64 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-----------RHRNCPICRLQMTGANES   64 (70)
T ss_dssp             CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-----------CCSSCHHHHHCTTCCCCC
T ss_pred             CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-----------CcCcCCCcCCcccCCCcc
Confidence            345679999999999 8899999999999998832           247899999998765433

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=1.4e-09  Score=79.55  Aligned_cols=49  Identities=31%  Similarity=0.693  Sum_probs=41.0

Q ss_pred             CCCccCcccccCCCcc-------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFENLCTI-------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~-------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      .+...|.||++...+.       +.++|||.||..|+..|....           ..||+||.+|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC-----------SSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC-----------CCCCCCCCccCc
Confidence            3456799999988776       889999999999999995543           689999999864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.85  E-value=3e-09  Score=77.87  Aligned_cols=52  Identities=27%  Similarity=0.567  Sum_probs=41.3

Q ss_pred             CCCCccCcccccCC---CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618          318 ASDVELCCICFENL---CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV  380 (460)
Q Consensus       318 ~~~~~~C~iC~~~~---~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~  380 (460)
                      ......|.||++..   ..++.+||||.||..|+..|....           ..||+||..|...+
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----------KKCPICRVDIEAQL   65 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCSBSCSCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----------CCCcCcCccccCcC
Confidence            34456799998766   456779999999999999996544           56999999987644

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.84  E-value=2.2e-09  Score=74.75  Aligned_cols=47  Identities=28%  Similarity=0.659  Sum_probs=39.6

Q ss_pred             CCccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          320 DVELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       320 ~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      +...|.||++...+    ++.++|||.||..|+..|....           ..||+||.+|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----------YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----------CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----------CcCCCCCCcCC
Confidence            34679999998865    7889999999999999995544           67999999875

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.82  E-value=3.9e-09  Score=79.28  Aligned_cols=52  Identities=23%  Similarity=0.547  Sum_probs=40.3

Q ss_pred             CCCccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeee
Q 012618          319 SDVELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVA  381 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~  381 (460)
                      .+...|.||++.+..   +..++|||.||..|+..|....           ..||+||..+.....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-----------DSCPVCRKSLTGQNT   67 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-----------CSCTTTCCCCCCSCS
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-----------CcCcCcCCccCCccc
Confidence            345679999887654   4567999999999999995332           689999999876433

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.82  E-value=2.2e-09  Score=90.24  Aligned_cols=47  Identities=30%  Similarity=0.615  Sum_probs=41.0

Q ss_pred             ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ..|.||++.+.+++.+||||.||..|+..|....           ..||+||.+|...
T Consensus        54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-----------IECPICRKDIKSK  100 (138)
T ss_dssp             SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-----------SBCTTTCCBCCCE
T ss_pred             CCCcccCcccCCceECCCCCCccHHHHHHHHHcC-----------CcCCCCCCcCCCC
Confidence            3599999999999999999999999999994333           6799999999654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=2.6e-09  Score=77.47  Aligned_cols=50  Identities=34%  Similarity=0.739  Sum_probs=41.8

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      .+...|.||++...+++.++|||.||..|+..|..          .....||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS----------SSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT----------TSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH----------hCcCCCCCCCcCCCh
Confidence            34567999999999999999999999999999943          223679999999864

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=2.8e-09  Score=79.16  Aligned_cols=54  Identities=26%  Similarity=0.671  Sum_probs=42.0

Q ss_pred             CCCccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEe
Q 012618          319 SDVELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAAR  383 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~  383 (460)
                      .....|.||++....   +..+||||.||..|+..|....           ..||+||.+|..+..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~~   69 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----------KVCPLCNMPVLQLAQLS   69 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----------SBCTTTCCBCSSCCSCC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----------CcCCCcCcccccccccC
Confidence            345679999998754   4445999999999999996544           57999999987765443

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.81  E-value=6.8e-09  Score=79.26  Aligned_cols=55  Identities=24%  Similarity=0.484  Sum_probs=44.5

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      .+...|.||++...+.+.++|||.||..|+..|.....     .......||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR-----NTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB-----CTTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc-----CCCCCCCCCCCCCcCCH
Confidence            34567999999999999999999999999999965532     12234789999999864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=3.8e-09  Score=81.31  Aligned_cols=52  Identities=29%  Similarity=0.641  Sum_probs=42.6

Q ss_pred             CCCccCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      .+...|.||++.+.+    ++.++|||.||..|+..|....        .....||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--------~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS--------INGVRCPFCSKITRI   68 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC--------SSCBCCTTTCCCBCC
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC--------CCCcCCCCCCCcccc
Confidence            345679999999998    8899999999999999996543        234789999998653

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=5.5e-09  Score=79.79  Aligned_cols=56  Identities=29%  Similarity=0.516  Sum_probs=44.2

Q ss_pred             CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ..+...|.||++...+++.+||||.||..|...|.....     .......||+||..+..
T Consensus        16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSM-----LDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHH-----HTTSCCCCTTTCCSSCS
T ss_pred             ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhh-----cCCCCCcCCCCCCccCH
Confidence            344567999999999999999999999999999865421     01224789999999864

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=6.5e-09  Score=74.55  Aligned_cols=48  Identities=25%  Similarity=0.628  Sum_probs=39.1

Q ss_pred             CCCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618          317 EASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC  372 (460)
Q Consensus       317 ~~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C  372 (460)
                      ...+...|.||++...+++.++|||.||..|+..|....        .....||+|
T Consensus        16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS--------CGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHC--------SSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcC--------CCCCcCcCC
Confidence            344566899999999999999999999999999995431        233689998

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.79  E-value=6.3e-09  Score=77.26  Aligned_cols=49  Identities=27%  Similarity=0.648  Sum_probs=41.1

Q ss_pred             CCCccCcccccCCCccEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          319 SDVELCCICFENLCTIEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      .+...|.||++.+.+++.++ |||.||..|+..|....         ....||+||.++
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~~~CP~Cr~~~   62 (74)
T 2yur_A           13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES---------DEHTCPTCHQND   62 (74)
T ss_dssp             CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS---------SSSCCSSSCCSS
T ss_pred             CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc---------CCCcCCCCCCcC
Confidence            34567999999999999999 99999999999995433         136799999964

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.77  E-value=6.3e-09  Score=77.72  Aligned_cols=52  Identities=35%  Similarity=0.644  Sum_probs=39.8

Q ss_pred             CCccCcccccCC--CccEecC--CCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeee
Q 012618          320 DVELCCICFENL--CTIEIKP--CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVA  381 (460)
Q Consensus       320 ~~~~C~iC~~~~--~~~~~~~--CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~  381 (460)
                      +...|.||++..  .++.+.|  |||.||..|+..+...          ....||+||.++.....
T Consensus        10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----------~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A           10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----------ENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----------SCSBCTTTCCBCSSCSS
T ss_pred             cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----------CCCCCCCCCCccCCCch
Confidence            456799999977  3456666  9999999999888321          23689999999976543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.77  E-value=2.5e-09  Score=78.78  Aligned_cols=48  Identities=29%  Similarity=0.692  Sum_probs=40.6

Q ss_pred             CCccCcccccCCCcc-------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          320 DVELCCICFENLCTI-------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~-------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      +...|.||++...+.       +.++|||.||..|+..|....           ..||+||.++..
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~   63 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINH   63 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----------CCCCCCCCccCh
Confidence            446799999988776       889999999999999996543           689999999864

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.76  E-value=5.2e-09  Score=72.81  Aligned_cols=47  Identities=30%  Similarity=0.719  Sum_probs=38.1

Q ss_pred             CCccCcccccCCCc---cEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          320 DVELCCICFENLCT---IEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       320 ~~~~C~iC~~~~~~---~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      +...|.||++....   +..+| |||.||..|...|-..           ...||+||.+|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-----------~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-----------HSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-----------CCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-----------CCcCcCCCCEeE
Confidence            34579999998877   67777 9999999999999322           267999999864

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.76  E-value=3e-09  Score=76.52  Aligned_cols=48  Identities=29%  Similarity=0.688  Sum_probs=40.3

Q ss_pred             CccCcccccCCCcc-------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          321 VELCCICFENLCTI-------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       321 ~~~C~iC~~~~~~~-------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ...|.||++...+.       +.++|||.||..|+..|...+           ..||+||.++..-
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINHK   57 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCTTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-----------CCCCCCCccCCcc
Confidence            45699999988765       788999999999999996543           6899999998753

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.74  E-value=3.5e-09  Score=79.74  Aligned_cols=56  Identities=27%  Similarity=0.518  Sum_probs=43.0

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      .+...|.||++.+.+++.+||||.||..|+..|.....    ........||+||..+..
T Consensus        10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~----~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAV----TSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCS----SSCCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcc----cCCCCCCcCCCCCCcCCH
Confidence            34567999999999999999999999999987743321    011235789999999864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.73  E-value=2.2e-09  Score=75.00  Aligned_cols=45  Identities=24%  Similarity=0.566  Sum_probs=38.1

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      .+...|.||++.+.+++.+||||.||..|...              ....||+||..+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~--------------~~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------------SGMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------------SSSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHcc--------------CCCCCCcCCcEee
Confidence            34567999999999999999999999999833              2368999999875

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=5.4e-09  Score=77.85  Aligned_cols=49  Identities=27%  Similarity=0.688  Sum_probs=39.8

Q ss_pred             CCCccCcccccCCCcc---EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFENLCTI---EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~---~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      .+...|.||++.....   ..+||||.||..|+..|...+           ..||+||.++..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----------RTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----------SSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----------CcCcCcCCcCCC
Confidence            3456799999876654   778999999999999996544           679999998753

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.72  E-value=7.4e-09  Score=80.22  Aligned_cols=49  Identities=24%  Similarity=0.578  Sum_probs=40.0

Q ss_pred             CCCccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      .+...|.||++.+..   +..+||||.||..|+..|...+           ..||+||..+..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-----------GTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-----------CBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-----------CcCcCcCccCCC
Confidence            345679999988776   7778999999999999995433           689999998754

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.68  E-value=1.1e-08  Score=99.08  Aligned_cols=55  Identities=40%  Similarity=0.848  Sum_probs=47.1

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeec
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARII  385 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~  385 (460)
                      ...|.||++...+++.+||||.||..|...|...          ....||+||.+|.....+.+.
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~----------~~~~CP~CR~~i~~~~~i~v~  386 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES----------EGQGCPFCRCEIKGTEPIVVD  386 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH----------TCSBCTTTCCBCCEEEECSCC
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc----------CCCCCCCCCCccCCceeEecC
Confidence            4689999999999999999999999999999542          227899999999988777653

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=2.9e-08  Score=69.73  Aligned_cols=46  Identities=28%  Similarity=0.646  Sum_probs=37.9

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFC  372 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C  372 (460)
                      .+...|.||++...+.+.++|||.||..|+..|...        ......||+|
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWED--------LERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTS--------SCCSCCCSCC
T ss_pred             ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHh--------cCCCCCCCCC
Confidence            345679999999999999999999999999999432        1234789998

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.66  E-value=1.8e-08  Score=75.54  Aligned_cols=49  Identities=14%  Similarity=0.133  Sum_probs=42.0

Q ss_pred             CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      +...|.||++...+++.++|||.||..|...|...          +...||+||.++..
T Consensus         7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~----------~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA----------GHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT----------TCCBCTTTCCBCSS
T ss_pred             ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH----------CcCCCCCCcCCCCh
Confidence            45679999999999999999999999999999532          23789999999864

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.66  E-value=1.9e-08  Score=78.08  Aligned_cols=50  Identities=26%  Similarity=0.636  Sum_probs=41.7

Q ss_pred             CCCccCcccccCCCccEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          319 SDVELCCICFENLCTIEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      .+...|.||++.+.+++.+| |||.||..|+..|....         ....||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES---------DEHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHC---------TTCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhc---------CCCcCcCCCCcCC
Confidence            34567999999999999999 99999999999985432         1268999999973

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.64  E-value=7e-09  Score=100.00  Aligned_cols=50  Identities=30%  Similarity=0.815  Sum_probs=44.3

Q ss_pred             CCccCcccccCCCccEecCCCCc-cchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          320 DVELCCICFENLCTIEIKPCGHQ-MCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~-~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      +...|.||++.+.+++++||||. ||..|+..+               ..||+||.+|...+.+.+
T Consensus       294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~~~i~~  344 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---------------RKCPICRGIIKGTVRTFL  344 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---------------SBCTTTCCBCCEEEECC-
T ss_pred             CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---------------CcCCCCCCCccCeEEeec
Confidence            44689999999999999999999 899999766               789999999999988764

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.62  E-value=1.9e-08  Score=79.34  Aligned_cols=47  Identities=26%  Similarity=0.663  Sum_probs=40.9

Q ss_pred             ccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          322 ELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ..|.||++.+.+++. ++|||.||..|+..|.....          ..||+||.++..
T Consensus        23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~~   70 (100)
T 3lrq_A           23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR----------AQCPHCRAPLQL   70 (100)
T ss_dssp             TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC----------SBCTTTCCBCCG
T ss_pred             CCCccCCccccCccccCCCCChhhHHHHHHHHHHCc----------CCCCCCCCcCCH
Confidence            469999999999999 99999999999999965541          579999999854

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.62  E-value=9.2e-09  Score=74.25  Aligned_cols=48  Identities=23%  Similarity=0.550  Sum_probs=37.2

Q ss_pred             CccCccccc-CCCcc----EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          321 VELCCICFE-NLCTI----EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       321 ~~~C~iC~~-~~~~~----~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ...|.||++ ...+.    +.++|||.||..|+..|....          ...||+||.++..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG----------AGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT----------SSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC----------CCcCCCCCCcccc
Confidence            456999999 44443    568999999999999994322          3679999999864

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.62  E-value=2.2e-08  Score=82.43  Aligned_cols=48  Identities=25%  Similarity=0.525  Sum_probs=41.1

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ...|.||++...+++.+||||.||..|+..|...          ....||+||.++..
T Consensus        52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----------~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA----------QVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT----------TCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH----------CcCCCCCCCccCCC
Confidence            3569999999999999999999999999999542          22589999999865

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.60  E-value=1.8e-08  Score=81.39  Aligned_cols=49  Identities=31%  Similarity=0.669  Sum_probs=41.2

Q ss_pred             ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ..|.||++...+++.+||||.||..|+..|....        .....||+||.++..
T Consensus        22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQK--------KGPSQCPLCKNDITK   70 (112)
T ss_dssp             TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSS--------SSSCCCTTTSCCCCT
T ss_pred             CCCcccChhhcCeEECCCCCHHHHHHHHHHHHhC--------CCCCCCcCCCCcCCH
Confidence            3599999999999999999999999999995543        223689999998864

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.60  E-value=2.7e-08  Score=78.39  Aligned_cols=47  Identities=30%  Similarity=0.714  Sum_probs=40.5

Q ss_pred             CccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          321 VELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ...|.||++...+++.+ +|||.||..|...|....           ..||+||..+..
T Consensus        22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-----------TQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-----------CBCTTTCCBCCG
T ss_pred             CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-----------CCCCCCCCcCCh
Confidence            35699999999999887 999999999999995432           689999999875

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.56  E-value=3.6e-08  Score=79.01  Aligned_cols=47  Identities=19%  Similarity=0.554  Sum_probs=40.9

Q ss_pred             CccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          321 VELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ...|.||++...+++.+ +|||.||..|...|....           ..||+||..+..
T Consensus        15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~   62 (108)
T 2ckl_A           15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-----------KYCPICDVQVHK   62 (108)
T ss_dssp             GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-----------SBCTTTCCBSCS
T ss_pred             cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-----------CcCcCCCccccc
Confidence            45699999999999997 999999999999995432           789999999875

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.56  E-value=3.9e-08  Score=83.52  Aligned_cols=49  Identities=24%  Similarity=0.522  Sum_probs=41.8

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ...|.||++.+.+++.+||||.||..|+..|....          ...||+||.++..-
T Consensus        78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ----------VFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT----------CCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC----------CCcCCCCCccCCCC
Confidence            35699999999999999999999999999995432          25799999998754

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.54  E-value=2.1e-08  Score=81.41  Aligned_cols=48  Identities=31%  Similarity=0.708  Sum_probs=40.5

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ...|.||++...+++.++|||.||..|+..|..          .....||+||..+..
T Consensus        15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~----------~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVE----------KASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCC----------TTTSBCTTTCCBCHH
T ss_pred             CCCCccCCcccCceeEcCCCCHHhHHHHHHHHh----------HCcCCCCCCCcccCc
Confidence            457999999999999999999999999977732          123789999999875

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.49  E-value=2.1e-07  Score=72.74  Aligned_cols=51  Identities=18%  Similarity=0.083  Sum_probs=43.1

Q ss_pred             CCCCccCcccccCCCccEecCCC-CccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          318 ASDVELCCICFENLCTIEIKPCG-HQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~~~~~~Cg-H~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ..+...|.||++-..+++.++|| |.||..|+..|...           ...||+||.++..-
T Consensus        19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-----------~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-----------DQTDPFNRSPLTMD   70 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-----------SCBCTTTCSBCCTT
T ss_pred             CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-----------CCCCCCCCCCCChh
Confidence            34567899999999999999999 99999999999432           26899999998643

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.49  E-value=1.5e-07  Score=71.68  Aligned_cols=50  Identities=18%  Similarity=0.070  Sum_probs=43.0

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      .+...|.||++-..+++.++|||.||..|+..|....           ..||+||.++..-
T Consensus        12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-----------PTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCGG
T ss_pred             chheECcccCchhcCCeECCCCCEECHHHHHHHHhcC-----------CCCCCCcCCCChH
Confidence            4567899999999999999999999999999996532           6799999988643

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.47  E-value=1.2e-07  Score=77.23  Aligned_cols=52  Identities=23%  Similarity=0.478  Sum_probs=43.4

Q ss_pred             CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ..+...|.||++...+++.++|||.||..|+..|.....          ..||+||.++...
T Consensus        15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~   66 (118)
T 3hct_A           15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG----------HKCPVDNEILLEN   66 (118)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCCGG
T ss_pred             CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC----------CCCCCCCCCcCHH
Confidence            344567999999999999999999999999999955441          3799999998764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=1.1e-07  Score=71.78  Aligned_cols=48  Identities=19%  Similarity=0.543  Sum_probs=36.2

Q ss_pred             CCccCcccccCCCc--------------cEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          320 DVELCCICFENLCT--------------IEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       320 ~~~~C~iC~~~~~~--------------~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      +...|.||++....              ++.+ +|||.|+..|+..|...+           ..||+||.++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-----------NRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-----------CBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-----------CCCCCcCCCcch
Confidence            34568888887754              4444 599999999999994333           589999998753

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.45  E-value=1.9e-07  Score=73.38  Aligned_cols=49  Identities=18%  Similarity=0.095  Sum_probs=42.3

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      .+...|.||++-..+++.+||||.||..|+..|...           ...||+||.++..
T Consensus        27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-----------~~~cP~~~~~l~~   75 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-----------SPTDPFNRQTLTE   75 (100)
T ss_dssp             STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-----------CSBCSSSCCBCCT
T ss_pred             cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-----------CCCCCCCCCCCCh
Confidence            456689999999999999999999999999999432           2789999999864

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.45  E-value=9.3e-08  Score=82.82  Aligned_cols=48  Identities=27%  Similarity=0.643  Sum_probs=40.8

Q ss_pred             CccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          321 VELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ...|.||++.+.+++.+ +|||.||..|+..|....          ...||+||.++..
T Consensus        54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG----------NKECPTCRKKLVS  102 (165)
T ss_dssp             HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT----------CCBCTTTCCBCCS
T ss_pred             CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC----------cCCCCCCCCcCCC
Confidence            45799999999998886 999999999999995532          2679999999854

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.44  E-value=9e-08  Score=77.44  Aligned_cols=51  Identities=29%  Similarity=0.695  Sum_probs=38.1

Q ss_pred             ccCcccccCCCcc------------------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          322 ELCCICFENLCTI------------------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       322 ~~C~iC~~~~~~~------------------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ..|.||++.+...                  ..++|||.||..|+..|.....      ......||+||..+..
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~------~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN------KDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC------CSSCCBCTTTCCBSSS
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc------CCCCCcCCCCCCccCC
Confidence            4799999987543                  3789999999999999953221      1223689999998754

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.40  E-value=1.6e-07  Score=76.26  Aligned_cols=48  Identities=27%  Similarity=0.442  Sum_probs=41.4

Q ss_pred             CccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          321 VELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ...|.||++...+++.++|||.||..|+..|....          ...||+||.++..
T Consensus        23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           23 SISCQICEHILADPVETSCKHLFCRICILRCLKVM----------GSYCPSCRYPCFP   70 (116)
T ss_dssp             HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT----------CSBCTTTCCBCCG
T ss_pred             CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC----------cCcCCCCCCCCCH
Confidence            45699999999999999999999999999995442          2679999999865

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.38  E-value=1.7e-07  Score=77.84  Aligned_cols=54  Identities=28%  Similarity=0.591  Sum_probs=43.7

Q ss_pred             CCccCcccccCCCcc-------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          320 DVELCCICFENLCTI-------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~-------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      +...|.||++...+.       +.++|||.||..|+..|....           ..||+||..+...-..++
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-----------SBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-----------CCCCCCCCcCcccccccc
Confidence            345799999998877       889999999999999995433           589999999975554443

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.37  E-value=1.1e-07  Score=79.82  Aligned_cols=49  Identities=22%  Similarity=0.463  Sum_probs=41.2

Q ss_pred             CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      ..+...|.||++...+++.++|||.||..|+..|....          ...||+||.+|
T Consensus        28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~----------~~~CP~Cr~~~   76 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG----------PQNCAACVHEG   76 (141)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS----------CEECHHHHHTT
T ss_pred             CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC----------CCCCCCCCCcc
Confidence            34556799999999999999999999999999995322          25799999987

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.30  E-value=1.6e-07  Score=76.37  Aligned_cols=44  Identities=23%  Similarity=0.497  Sum_probs=38.2

Q ss_pred             CccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          321 VELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      ...|.||++.+.+++.+ +|||.||..|+..|..             ..||+||.++.
T Consensus        22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~   66 (117)
T 1jm7_B           22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAW   66 (117)
T ss_dssp             TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCS
T ss_pred             CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCc
Confidence            35699999999999998 9999999999988721             67999999974

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.23  E-value=9.8e-07  Score=69.87  Aligned_cols=46  Identities=22%  Similarity=0.497  Sum_probs=36.8

Q ss_pred             CCccCcccccCCCc------------------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          320 DVELCCICFENLCT------------------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       320 ~~~~C~iC~~~~~~------------------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      +.+.|.||++.+..                  ++.++|||.|+..|+..|...+           ..||+||.+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-----------SBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-----------CcCcCCCCcc
Confidence            45679999987654                  3558999999999999995433           7899999985

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.14  E-value=9.2e-07  Score=73.37  Aligned_cols=50  Identities=30%  Similarity=0.666  Sum_probs=41.3

Q ss_pred             CCCccCcccccCCCcc-------EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          319 SDVELCCICFENLCTI-------EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~-------~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      .+...|.||++.....       +..+|||.||..|...|....           ..||+||.+|..-
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINHK  126 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-----------SBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-----------CCCCCCCCcCChh
Confidence            3456799999987765       788999999999999996544           6899999998654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.14  E-value=1.8e-06  Score=81.41  Aligned_cols=49  Identities=18%  Similarity=0.059  Sum_probs=41.9

Q ss_pred             CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      +...|.||++-..+++.+||||.||..|+..|....          ...||+||.++..
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~----------~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV----------GHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT----------CSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC----------CCCCcCCCCCCch
Confidence            456799999999999999999999999999996543          1349999999864

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.05  E-value=2.4e-06  Score=74.24  Aligned_cols=52  Identities=23%  Similarity=0.464  Sum_probs=43.1

Q ss_pred             CCCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          318 ASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ..+...|.||++...+++..+|||.||..|+..|....          ...||+||.++..-
T Consensus        15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA----------GHKCPVDNEILLEN   66 (170)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH----------CSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC----------CCCCCCCccCcchh
Confidence            34456799999999999999999999999999985433          14899999998763

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=97.98  E-value=5.1e-06  Score=71.91  Aligned_cols=50  Identities=18%  Similarity=0.022  Sum_probs=42.1

Q ss_pred             CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      +...|.||++-..+++.+||||.||..|+..|...+          ...||+||.++..-
T Consensus       105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~----------~~tcP~t~~~l~~~  154 (179)
T 2f42_A          105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV----------GHFDPVTRSPLTQD  154 (179)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT----------CSBCTTTCCBCCGG
T ss_pred             HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC----------CCCCCCCcCCCChh
Confidence            456799999999999999999999999999995442          13699999988653

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.96  E-value=1.5e-05  Score=72.42  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=41.3

Q ss_pred             CCCCccCcccccCCCccEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcc--cccccc
Q 012618          318 ASDVELCCICFENLCTIEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPF--CRCSIA  377 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~--Cr~~i~  377 (460)
                      ......|.||++.+.+++. ..|||.||..|+..+....         ....||+  ||..+.
T Consensus       178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~---------~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY---------TTRDCPQAACSQVVS  231 (267)
T ss_dssp             SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC---------SCEECSGGGCSCEEC
T ss_pred             CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC---------CCCCCCcccccCcCc
Confidence            3445679999999999998 4999999999999994321         2368999  999774

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=6.1e-06  Score=63.96  Aligned_cols=53  Identities=19%  Similarity=0.315  Sum_probs=41.1

Q ss_pred             CCccCcccccCCCccEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCcc--cccc-cc
Q 012618          320 DVELCCICFENLCTIEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPF--CRCS-IA  377 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~--Cr~~-i~  377 (460)
                      +...|.||++.+.+++..+ |||.||..|+..|...+.     .......||+  |+.. +.
T Consensus         6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~-----~~~~~~~CP~tgc~~~~l~   62 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQ-----KRKKKAYCPQIGCSHTDIR   62 (94)
T ss_dssp             SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHH-----TTTCCBCCCSTTCCCCCBC
T ss_pred             cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHcc-----CcCCCCCCCcCcCcccccC
Confidence            3457999999999999996 999999999999965431     0112468999  9866 43

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.92  E-value=1.6e-06  Score=69.64  Aligned_cols=46  Identities=22%  Similarity=0.497  Sum_probs=0.8

Q ss_pred             CCccCcccccCCCc------------------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          320 DVELCCICFENLCT------------------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       320 ~~~~C~iC~~~~~~------------------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      +.+.|.||++....                  ++..+|+|.|+..|+..|...+           ..||+||.+.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-----------~~CP~Cr~~~  110 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREW  110 (117)
T ss_dssp             CC-------------------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-----------CcCCCCCCee
Confidence            34679999988754                  2335899999999999994332           6899999984

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.82  E-value=1.5e-05  Score=59.45  Aligned_cols=51  Identities=22%  Similarity=0.466  Sum_probs=39.0

Q ss_pred             CCCccCcccccCC--CccEecCCC-----CccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFENL--CTIEIKPCG-----HQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~~~--~~~~~~~Cg-----H~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      .+...|.||++..  .+...+||+     |.|...|+..|...+.         ...||+||..+.-
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---------~~~CplCr~~~~~   70 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD---------TRCCELCKYEFIM   70 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC---------CSBCSSSCCBCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC---------CCCCCCCCCeeec
Confidence            3456799999765  345678996     9999999999965541         2589999998743

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.77  E-value=6.5e-06  Score=63.85  Aligned_cols=52  Identities=15%  Similarity=0.372  Sum_probs=37.6

Q ss_pred             CccCcccccCCCccEe---cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcc--cccc
Q 012618          321 VELCCICFENLCTIEI---KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPF--CRCS  375 (460)
Q Consensus       321 ~~~C~iC~~~~~~~~~---~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~--Cr~~  375 (460)
                      ...|.||++.....++   .+|||.||..|+..+......   +.......||.  ||..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~---~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK---EGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH---HCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhh---cCCcccccCccccCCCC
Confidence            4569999998776544   389999999999888554311   11123478999  9988

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.64  E-value=2.5e-05  Score=59.35  Aligned_cols=52  Identities=19%  Similarity=0.427  Sum_probs=39.7

Q ss_pred             cCcccccCCCc-cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          323 LCCICFENLCT-IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       323 ~C~iC~~~~~~-~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      .|.+|--.... ....||+|.||..|+..+....          ...||.||.+|.++-....
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~----------~k~Cp~C~~~V~rVe~~~~   55 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG----------DKMCPGCSDPVQRIEQCTR   55 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT----------CCBCTTTCCBCSEEEEEEG
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc----------CCCCcCcCCeeeeeEEecc
Confidence            57778666555 4457999999999998873222          2679999999999888654

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.42  E-value=9.1e-05  Score=52.07  Aligned_cols=52  Identities=10%  Similarity=-0.045  Sum_probs=43.6

Q ss_pred             ccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          322 ELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      ..|.||++...+++.. +|||.+|..|+..|-..+           ..||+++.+++..-.+++
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-----------~~cP~t~~~L~~~~Lip~   56 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLSIEEIVEI   56 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCCGGGCEEC
T ss_pred             EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-----------CCCcCCcCCCChhhcEEC
Confidence            4699999999999998 999999999999996544           459999999866555544

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.22  E-value=0.00016  Score=67.89  Aligned_cols=62  Identities=18%  Similarity=0.331  Sum_probs=40.4

Q ss_pred             CCCCccCcccccCCCc------cEe--cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          318 ASDVELCCICFENLCT------IEI--KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~------~~~--~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      +.....|.||++....      ..+  ..|||.|-..|...|-................||+||++|+.-
T Consensus       305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            3456779999976554      233  3799999999999995443111111112235799999998643

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.81  E-value=0.0027  Score=46.23  Aligned_cols=51  Identities=25%  Similarity=0.554  Sum_probs=37.4

Q ss_pred             CCCCccCcccccCCCc-cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          318 ASDVELCCICFENLCT-IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~-~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      ......|.||.+.... ..+..|+|.|=..|+.+|-..         .....||+||++..
T Consensus        12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~---------~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS---------NAEPRCPHCNDYWP   63 (74)
T ss_dssp             SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTT---------CSSCCCTTTCSCCC
T ss_pred             cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHh---------cCCCCCCCCcCcCC
Confidence            3455779999987653 445589999999999999321         12278999998754

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=96.74  E-value=0.001  Score=46.43  Aligned_cols=50  Identities=26%  Similarity=0.573  Sum_probs=37.3

Q ss_pred             CCCCccCcccccCCCccEecCCCC-----ccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          318 ASDVELCCICFENLCTIEIKPCGH-----QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~~~~~~CgH-----~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      +++...|.||++........||.+     .+=..|+.+|...+.         ...||+||.+.
T Consensus         3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~---------~~~C~~C~~~~   57 (60)
T 1vyx_A            3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR---------NTACQICGVVY   57 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT---------CSBCTTTCCBC
T ss_pred             CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC---------CCccCCCCCee
Confidence            345678999998766555689654     678899999975531         27899999875

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=93.23  E-value=0.091  Score=37.73  Aligned_cols=54  Identities=24%  Similarity=0.467  Sum_probs=36.3

Q ss_pred             CCCccCcccccCCCccEecCC----CCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618          319 SDVELCCICFENLCTIEIKPC----GHQMCAHCTLALCCHKKPDIITAVPEVPACPFC  372 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~C----gH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C  372 (460)
                      .....|.+|.++..+..|.-|    +|.||..|....-....+...---+...+||+=
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~   70 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLV   70 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCS
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccC
Confidence            345679999999999988878    789999999776444322211122444556653

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=92.44  E-value=0.17  Score=37.20  Aligned_cols=52  Identities=23%  Similarity=0.538  Sum_probs=38.8

Q ss_pred             CCCCccCcccccCC-------CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          318 ASDVELCCICFENL-------CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       318 ~~~~~~C~iC~~~~-------~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      ....+.|.||-|..       ..+++..|+=.+|..|+.+-          .......||-|+.+-++.
T Consensus        13 ~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE----------rkeG~q~CpqCktrYkr~   71 (93)
T 1weo_A           13 NLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE----------RREGTQNCPQCKTRYKRL   71 (93)
T ss_dssp             CCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH----------HHTSCSSCTTTCCCCCCC
T ss_pred             ccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHH----------HhccCccccccCCccccc
Confidence            34567899999874       33555678888899999888          333447899999987654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=85.92  E-value=0.41  Score=36.74  Aligned_cols=31  Identities=23%  Similarity=0.457  Sum_probs=23.7

Q ss_pred             CccCcccccC-CCc--cEecCCCCccchhhHHHH
Q 012618          321 VELCCICFEN-LCT--IEIKPCGHQMCAHCTLAL  351 (460)
Q Consensus       321 ~~~C~iC~~~-~~~--~~~~~CgH~~C~~C~~~~  351 (460)
                      ...|.||.+. ...  ...++|+|.||..|...+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            3569999964 333  334999999999999874

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=83.73  E-value=0.89  Score=31.43  Aligned_cols=32  Identities=38%  Similarity=0.844  Sum_probs=26.7

Q ss_pred             CCCccCcccccCCCccEecCC-CCccchhhHHHH
Q 012618          319 SDVELCCICFENLCTIEIKPC-GHQMCAHCTLAL  351 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~C-gH~~C~~C~~~~  351 (460)
                      .+..-|.||.+. ..+.++.| |-++|.+|+...
T Consensus         6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~   38 (67)
T 2d8v_A            6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREG   38 (67)
T ss_dssp             CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHH
T ss_pred             cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHH
Confidence            445679999998 77899999 778899999776

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=81.69  E-value=1.5  Score=39.47  Aligned_cols=49  Identities=27%  Similarity=0.581  Sum_probs=35.7

Q ss_pred             CccCcccccCCCc-cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          321 VELCCICFENLCT-IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       321 ~~~C~iC~~~~~~-~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      ...|.+|.+-... ..+..|+|.+-..|...|..+         .....||.|+.+...
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~---------~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS---------NAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTT---------CSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHh---------CCCCCCCCCCCCCCC
Confidence            5679999985543 445559999999999998322         223689999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	460
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-28
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-20
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-19
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-18
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.004
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-05
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.003
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-04
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-04
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	0.001
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 2e-28
 Identities = 56/223 (25%), Positives = 86/223 (38%), Gaps = 29/223 (13%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
            LH+A+  G + ++  LL +     + +  N   +TPL +AA  G     K L+++ A +
Sbjct: 3   PLHVASFMGHLPIVKNLLQR---GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTA---------------------ARTSPVANT 147
            N  +   +T LH AA  GH++ ++ LL                            V   
Sbjct: 60  -NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 148 WGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAAR 207
                      + G TPLH+AA+ G       LL+  A   ++       G TPLH A  
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN----GLTPLHVAVH 174

Query: 208 GGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
             +L+ ++ LL  G     P   G  P  IA K      A  L
Sbjct: 175 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 2e-26
 Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 47/266 (17%)

Query: 14  ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYT 73
            L VA + G +++ E ++E D       +G    + LH+A  +  ++++ +LL +     
Sbjct: 135 PLHVAAKYGKVRVAELLLERDAHP--NAAGKNGLTPLHVAVHHNNLDIVKLLLPR---GG 189

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
           +  +      TPL +AA   ++   + L++ G         QG T LH AA  GH++   
Sbjct: 190 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEM-- 246

Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGG 193
                     VA         N+ ++SG TPLHL A++G       L+ +G +  ++T  
Sbjct: 247 ----------VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 296

Query: 194 NGYP-----------------------------GSTPLHFAARGGSLECIRELLAWGADR 224
              P                             G +PLH AA+ G  + +  LL  GA  
Sbjct: 297 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 356

Query: 225 VQPDAFGRIPYAIALKYKHQACAALL 250
            +  + G  P AIA +  + +   +L
Sbjct: 357 NEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 4e-26
 Identities = 58/203 (28%), Positives = 78/203 (38%), Gaps = 42/203 (20%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
           TPL VA+  G L  VK L++ GA   N  +++  T LH AA  GH++  + LL       
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNK---- 56

Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP------ 197
            A        VN + +   TPLH AAR G +  V  LL+N A    +T     P      
Sbjct: 57  -AK-------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 108

Query: 198 -----------------------GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234
                                  G TPLH AA+ G +     LL   A        G  P
Sbjct: 109 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP 168

Query: 235 YAIALKYKHQACAALLNPSSAEP 257
             +A+ + +     LL P    P
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSP 191

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 1e-22
 Identities = 62/288 (21%), Positives = 103/288 (35%), Gaps = 49/288 (17%)

Query: 9   ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
            + E+ L +A   G  ++ + +++    V    +    Q+ LH AA  G   ++ +LL+ 
Sbjct: 31  VKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDD-QTPLHCAARIGHTNMVKLLLEN 88

Query: 69  ------------------------------FFLYTNTDALNRYKQTPLMVAAMNGKLSCV 98
                                              +   + +   TPL VAA  GK+   
Sbjct: 89  NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA 148

Query: 99  KKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD 158
           + L+E  A   N     G T LH A ++ + D ++ L                   +   
Sbjct: 149 ELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLL------------LPRGGSPHSPA 195

Query: 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
            +G TPLH+AA+Q   E   +LL  G  A + +      G TPLH AA+ G  E +  LL
Sbjct: 196 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAES----VQGVTPLHLAAQEGHAEMVALLL 251

Query: 219 AWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRN 266
           +  A+    +  G  P  +  +  H   A +L                
Sbjct: 252 SKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 299

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 5e-21
 Identities = 57/227 (25%), Positives = 83/227 (36%), Gaps = 31/227 (13%)

Query: 14  ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYT 73
            L VAV + +L +++ ++    +    +  +   + LH+AA   Q+EV   LL       
Sbjct: 168 PLHVAVHHNNLDIVKLLLPRGGSP--HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 225

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQ 133
                     TPL +AA  G    V  L+   A   N  +  G T LH  A  GH     
Sbjct: 226 AES---VQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVAD 281

Query: 134 ALLTA---------------------ARTSPVANTWGFSRFVNIRDESGATPLHLAARQG 172
            L+                            V         VN + + G +PLH AA+QG
Sbjct: 282 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 341

Query: 173 WSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA 219
            ++ V  LL NGA     +      G+TPL  A R G +     L  
Sbjct: 342 HTDIVTLLLKNGASPNEVSSD----GTTPLAIAKRLGYISVTDVLKV 384

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 1e-14
 Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 163 TPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA 222
           TPLH+A+  G    V  LL  GA    S         TPLH AAR G  E  + LL   A
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVK----VETPLHMAARAGHTEVAKYLLQNKA 57

Query: 223 DRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWP 261
                    + P   A +  H     LL  ++A P +  
Sbjct: 58  KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 96

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 2e-24
 Identities = 56/277 (20%), Positives = 83/277 (29%), Gaps = 69/277 (24%)

Query: 12  ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
              L  AV+N D+ +++ ++E    V       G  + LH A    + +++ +LL     
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGG-WTPLHNAVQMSREDIVELLLRHGAD 64

Query: 72  YTNTD------------------------------ALNRYKQTPLMVAAMNGKLSCVKKL 101
                                                + Y  T  M AA+ GK+  +K L
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 102 IESGA---------FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSR 152
            + GA                  G T L  AA  GH + L+ LL        A       
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 153 F--------------------------VNIRDESGATPLHLAARQGWSECVHTLLDNGAL 186
                                      VN+R E G TPL LA  +     V  LL+   +
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244

Query: 187 ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
             + T  +G    T L  A      +    L   GA 
Sbjct: 245 EINDTDSDGK---TALLLAVELKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 5e-17
 Identities = 45/191 (23%), Positives = 63/191 (32%), Gaps = 28/191 (14%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
             L+ A  N  +  V++L+E GA +   +   G T LH A      D ++ LL       
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 144 VANTWGFSR---------------------FVNIRDESGATPLHLAARQGWSECVHTLLD 182
           +    G +                       VN  D  G T    AA  G  + +  L  
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 183 NGALACSSTGGNGYP------GSTPLHFAARGGSLECIRELLA-WGADRVQPDAFGRIPY 235
            GA                  G+T L  AA  G +E ++ LL   GAD    D  GR   
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 236 AIALKYKHQAC 246
             AL     + 
Sbjct: 187 IHALLSSDDSD 197

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 6e-14
 Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 6/141 (4%)

Query: 1   MGQRMSCRERSESALFVAVENGDLQMIEAMVE---ADPTVLGMTSGYGKQSALHLAAAYG 57
              +   R+   +AL  A E G +++++ +++   AD              AL  +    
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 197

Query: 58  QIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGR 117
              +  +LLD      + +      +TPL++A     L  V++L+E     +N     G+
Sbjct: 198 VEAITHLLLDH---GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 118 TCLHYAAYYGHSDCLQALLTA 138
           T L  A         + L   
Sbjct: 255 TALLLAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 1e-08
 Identities = 48/220 (21%), Positives = 76/220 (34%), Gaps = 17/220 (7%)

Query: 113 SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATPLHLAARQ 171
           +++    L  A      D +Q LL        AN       VN ++ E G TPLH A + 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGG-----AN-------VNFQEEEGGWTPLHNAVQM 49

Query: 172 GWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFG 231
              + V  LL +     +        G+TP   AA  GS++ ++  L+ GAD  + D +G
Sbjct: 50  SREDIVELLLRH----GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 232 RIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREK 291
              +  A  Y        L    A   +      +   L       L  A  + + E  K
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 292 AILNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENL 331
            +L+E    V +          +   +SD          L
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 88.0 bits (217), Expect = 8e-20
 Identities = 33/218 (15%), Positives = 59/218 (27%), Gaps = 20/218 (9%)

Query: 13  SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
            A  +A ENG L ++  + E  PT +          A  LAA  G + VL+ L +     
Sbjct: 128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187

Query: 73  TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCL 132
                           A   G  + +  L++    +             +   YG     
Sbjct: 188 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML--------AYAEIHEFEYGEKYVN 239

Query: 133 QALLTAARTSPVANTWGFS-----------RFVNIRDESGATPLHLAARQGWSECVHTLL 181
             +          +                +   ++       L     +   + +  LL
Sbjct: 240 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL 299

Query: 182 DNGAL-ACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
               + A + T       +  L  A R G+      LL
Sbjct: 300 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 83.0 bits (204), Expect = 4e-18
 Identities = 26/213 (12%), Positives = 44/213 (20%), Gaps = 23/213 (10%)

Query: 44  YGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE 103
           Y     L L        +    +    L  +   L+  +   + +          + L  
Sbjct: 10  YENDPQLRLIPWILWENLFQHFISANEL--SLMTLSYKEAIHIFLPGTKNMEQVRQLLCL 67

Query: 104 SGAFI----------LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF 153
             A             +   ++       AA  G S  L  L      +           
Sbjct: 68  YYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLL--LTSDEI------- 118

Query: 154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLEC 213
           V +          LAA  G    ++ L +                      AA  G L  
Sbjct: 119 VKVIQAENYQAFRLAAENGHLHVLNRLCELA--PTEIMAMIQAENYHAFRLAAENGHLHV 176

Query: 214 IRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
           +  L                 YA       +  
Sbjct: 177 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 209

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 82.2 bits (202), Expect = 7e-18
 Identities = 36/245 (14%), Positives = 61/245 (24%), Gaps = 25/245 (10%)

Query: 43  GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLI 102
           G   +    +AA  G    L  L            +         +AA NG L  + +L 
Sbjct: 87  GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 146

Query: 103 ESGAFILNFD-SLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG 161
           E     +      +       AA  GH   L  L   A   P   T        I+ E+ 
Sbjct: 147 ELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA---PTEATA------MIQAENY 197

Query: 162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWG 221
                 A  +G    ++ LLD                +         G       +    
Sbjct: 198 YAFRWAAVGRGHHNVINFLLD-----------CPVMLAYAEIHEFEYGEKYVNPFIARHV 246

Query: 222 ADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKA 281
                        + ++                   ++  L  RN   L  + + LL   
Sbjct: 247 NR----LKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 302

Query: 282 LMESN 286
            +++ 
Sbjct: 303 GIKAL 307

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 63.8 bits (154), Expect = 9e-12
 Identities = 24/170 (14%), Positives = 39/170 (22%), Gaps = 30/170 (17%)

Query: 15  LFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN 74
            + AV  G   +I  +++                A      YG+  V   +         
Sbjct: 201 RWAAVGRGHHNVINFLLDC---------PVMLAYAEIHEFEYGEKYVNPFIARH------ 245

Query: 75  TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQA 134
                +       ++  +G    V K      F            L         D ++ 
Sbjct: 246 -VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF-------YMLRNLIRRNDEVLLDDIRF 297

Query: 135 LLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNG 184
           LL+      +A                   L LA R G       LL   
Sbjct: 298 LLSIPGIKALAP-------TATIPGDANELLRLALRLGNQGACALLLSIP 340

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.7 bits (208), Expect = 8e-19
 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 8/196 (4%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVA---AMNGKLSCVKKLIE 103
            + LH   +   +E++  L+      +N    +   ++ L+ A     N      + L++
Sbjct: 108 NTPLHWLTSIANLELVKHLVKH---GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 104 SGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT 163
                L  +    RT LH+           A         +               +   
Sbjct: 165 YLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKE 224

Query: 164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
                      + +   LD   +  +        G T L+ AAR G++  +  LL +GAD
Sbjct: 225 SKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD 284

Query: 224 RVQPDAFGRIP--YAI 237
               +  G  P  +  
Sbjct: 285 PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (199), Expect = 1e-17
 Identities = 33/208 (15%), Positives = 68/208 (32%), Gaps = 30/208 (14%)

Query: 13  SALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF 70
           + L       +L++++ +V+  ++              A+     Y      ++L    +
Sbjct: 109 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL---DY 165

Query: 71  LYTNTDALNRYKQTPLMVAAMNGKL------------SCVKKLIESGAFILNFDSLQGRT 118
           LY      +   +T L    +   +              +  +++     +   + +  +
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 119 CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVH 178
             +          L+ L            W  +  +N +D +G T L++AAR G    V 
Sbjct: 226 KPNDKNGERKDSILENLDLK---------WIIANMLNAQDSNGDTCLNIAARLGNISIVD 276

Query: 179 TLLDNGALACSSTGGNGYPGSTPLHFAA 206
            LLD GA        N   G  P+ F A
Sbjct: 277 ALLDYGA---DPFIANKS-GLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 198 GSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACA 247
           G+TPLH+     +LE ++ L+  G++R+  D  G      A+K  +   +
Sbjct: 107 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS 156

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 154 VNIR-DESGATPLHLAARQGWSECVHTLLDNGA--LACSSTGGNGYPGSTPLHFAARGGS 210
           +NI  DE G TPLH        E V  L+ +G+  L   + G +    +         G+
Sbjct: 99  LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT 158

Query: 211 LECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAAL 249
            E + + L              + + I         AA 
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 197

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.1 bits (201), Expect = 3e-18
 Identities = 53/246 (21%), Positives = 80/246 (32%), Gaps = 34/246 (13%)

Query: 37  VLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLS 96
           V G  +  G  +ALHLA  +     L  LL     +   D  N   QT L +AA+ G+ S
Sbjct: 1   VFGYVTEDGD-TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59

Query: 97  CVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTA-ARTSPVANTWGFSRFVN 155
            V+K + +    +      G T LH A       C   LL         A+    ++  +
Sbjct: 60  TVEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

Query: 156 IRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNG-------------------- 195
              ++   P  + ++           ++  L   +   +G                    
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 196 -----------YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQ 244
                        G TPLH A    +   +  LL  GAD       GR P   AL   + 
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238

Query: 245 ACAALL 250
             A LL
Sbjct: 239 ILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (160), Expect = 7e-13
 Identities = 32/202 (15%), Positives = 52/202 (25%), Gaps = 4/202 (1%)

Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
            E G T LHLA        +  LL   A        N   G T LH AA  G    + +L
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEKL 64

Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKEL 277
            A GA  +  +  G     +A + +   CA +L                    +      
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 278 LEKALMESNEEREKAI---LNETICSVPSTSPSDAEVDDNTSEASDVELCCICFENLCTI 334
              A ++S    E        +    + + +              D E+  +  +    +
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL 184

Query: 335 EIKPCGHQMCAHCTLALCCHKK 356
                                 
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAAS 206

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 4e-10
 Identities = 36/167 (21%), Positives = 54/167 (32%), Gaps = 15/167 (8%)

Query: 19  VENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDAL 78
           ++       +A           T       A   +    + E      D        +A 
Sbjct: 98  LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL---QLEAE 154

Query: 79  NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
           N    TPL VA ++     V+ L ++GA +   +   GRT LH A     +  L+ LL A
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214

Query: 139 ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA 185
                 A+          R   G TPL  A  +        L  +GA
Sbjct: 215 G-----AD-------PTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 3e-17
 Identities = 51/238 (21%), Positives = 83/238 (34%), Gaps = 49/238 (20%)

Query: 11  SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF 70
           S   +     +G L+ ++  + AD ++   T    + +ALH A + G  E++  LL    
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLGV 61

Query: 71  LYTNT------------------------------DALNRYKQTPLMVAAMNGKLSCVKK 100
              +                               +A+N+   TPL  AA   +      
Sbjct: 62  PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM 121

Query: 101 LIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES 160
           L+E GA   +       T +H AA  G+   +  L              +    NI+D  
Sbjct: 122 LLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHIL------------LYYKASTNIQDTE 168

Query: 161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
           G TPLHLA  +   E    L+  GA              TPL   A+GG    ++ ++
Sbjct: 169 GNTPLHLACDEERVEEAKLLVSQGASIYIENKE----EKTPLQ-VAKGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 2e-15
 Identities = 51/190 (26%), Positives = 77/190 (40%), Gaps = 27/190 (14%)

Query: 84  TPLMV--AAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAART 141
           + LMV   A +GKL  +K+ I +   +        RT LH+A   GH++ ++ LL     
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 62

Query: 142 SPVANTWGFSR---------------------FVNIRDESGATPLHLAARQGWSECVHTL 180
               +  G+S                       VN  +++G TPLH AA +   E    L
Sbjct: 63  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 181 LDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK 240
           L+ GA   +         +T +H AA  G+L+ I  LL + A     D  G  P  +A  
Sbjct: 123 LEGGANPDAKDHY----EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD 178

Query: 241 YKHQACAALL 250
            +    A LL
Sbjct: 179 EERVEEAKLL 188

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.4 bits (181), Expect = 2e-15
 Identities = 48/281 (17%), Positives = 89/281 (31%), Gaps = 48/281 (17%)

Query: 12  ESALFVAVE-NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF 70
           ES + +  E  G   + E +      ++     +  ++ LH  A+    E    L+    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNII--DPRHN-RTVLHWIASNSSAEKSEDLIVHEA 57

Query: 71  LYT-----NTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAY 125
                   + +A++  + TPLM+A +  +   V  L+++GA      +   R+ LH AA 
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAA 116

Query: 126 YGHSDCLQALLTAARTSPVANTWGFSRF-------------------------------- 153
                 +  +L + +          +                                  
Sbjct: 117 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 176

Query: 154 ---VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGS 210
               +     G T LH AA+      V  L+            +G    TP+  AA+ G 
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK---TPIMLAAQEGR 233

Query: 211 LECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLN 251
           +E +  L+  GA     DA       +A    H     + +
Sbjct: 234 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.3 bits (121), Expect = 8e-08
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 12  ESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFL 71
            +AL  A +  ++ +++ +V    +        GK + + LAA  G+IEV+  L+ Q   
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK-TPIMLAAQEGRIEVVMYLIQQ--- 243

Query: 72  YTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE 103
             + +A++    T   +A  N   + V     
Sbjct: 244 GASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.0 bits (180), Expect = 2e-15
 Identities = 54/243 (22%), Positives = 86/243 (35%), Gaps = 29/243 (11%)

Query: 13  SALFVAVENGDLQMIEAMVE--ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFF 70
           +    A  +GD + +  ++E  AD       +  G  +ALH A     ++++  L++   
Sbjct: 42  AVFLAACSSGDTEEVLRLLERGADINY---ANVDG-LTALHQACIDDNVDMVKFLVENGA 97

Query: 71  LYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSD 130
                   +     PL  AA  G L   + LI  GA +   +S +G T L  A      +
Sbjct: 98  NINQP---DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS-EGDTPLDIAEEEAMEE 153

Query: 131 CLQ---------------ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
            LQ                                        +SG T LH+AA +G++E
Sbjct: 154 LLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213

Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
            +  L+              Y G TPLH AA  G  E  R L+    D    +  G+  +
Sbjct: 214 VLKLLIQARYDVNI----KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269

Query: 236 AIA 238
            +A
Sbjct: 270 DVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 79  NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
            +   T L VAA  G    +K LI++   + N     G T LH AA++G  +  + L+  
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVEN 254

Query: 139 ARTSPVANTWGFSRFVNIRDESGATPLHLAAR 170
                  +       +   ++ G T   +A  
Sbjct: 255 L-----CD-------MEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.5 bits (132), Expect = 4e-09
 Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 89  AAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTW 148
                 L   ++ + SG       +  G T LH AA  G+++ L+ L             
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL------------I 219

Query: 149 GFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAAR 207
                VNI+D  G TPLH AA  G  E    L++N     +        G T    A  
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN----KVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 10/51 (19%), Positives = 14/51 (27%)

Query: 196 YPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
           +        A   G  E +  LL  GAD    +  G      A    +   
Sbjct: 38  FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 10/92 (10%)

Query: 13  SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLY 72
           +AL VA   G  ++++ +++A   V      Y   + LH AA +G+ E   +L++     
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDV--NIKDYDGWTPLHAAAHWGKEEACRILVEN---L 255

Query: 73  TNTDALNRYKQTPLMVAAMNGKLSCVKKLIES 104
            + +A+N+  QT   VA  +     +   +E 
Sbjct: 256 CDMEAVNKVGQTAFDVADED-----ILGYLEE 282

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 16/132 (12%)

Query: 115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWS 174
                   A   G ++ +  LL        A+       +N  +  G T LH A      
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERG-----AD-------INYANVDGLTALHQACIDDNV 86

Query: 175 ECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIP 234
           + V  L++N     ++       G  PLH AA  G L+    L++ GA     ++ G  P
Sbjct: 87  DMVKFLVEN----GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142

Query: 235 YAIALKYKHQAC 246
             IA +   +  
Sbjct: 143 LDIAEEEAMEEL 154

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW 220
                  A   G +E V  LL+ GA    +       G T LH A    +++ ++ L+  
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVD----GLTALHQACIDDNVDMVKFLVEN 95

Query: 221 GADRVQPDAFGRIPYAIALKYKHQACAALLNP 252
           GA+  QPD  G IP   A    +   A  L  
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (165), Expect = 9e-14
 Identities = 43/213 (20%), Positives = 71/213 (33%), Gaps = 11/213 (5%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLY-TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESG 105
            S LHLA  + +  +   ++ Q        +  N  +QTPL +A +  +    +      
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE------ 56

Query: 106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL 165
             +L                   +     L +    +    T      +   + +G T L
Sbjct: 57  -ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 115

Query: 166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRV 225
           HLA+  G+   V  L+  GA   +    NG    T LH A    + + +  LL  GAD  
Sbjct: 116 HLASIHGYLGIVELLVSLGADVNAQEPCNGR---TALHLAVDLQNPDLVSLLLKCGADVN 172

Query: 226 QPDAFGRIPYAIALKYKHQACAALLNPSSAEPL 258
           +    G  PY +            L   + E L
Sbjct: 173 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 205

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 5e-06
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
           G + LH A  +        ++   +            F+N ++    TPLHLA      E
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLA--------FLNFQNNLQQTPLHLAVITNQPE 53

Query: 176 CVH 178
              
Sbjct: 54  IAE 56

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 198 GSTPLHFAARGGS----LECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
           G + LH A         +E IR++    A     +   + P  +A+       
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 54

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 6e-12
 Identities = 50/224 (22%), Positives = 79/224 (35%), Gaps = 32/224 (14%)

Query: 47  QSALHLAAAYGQIEVLSMLLDQFFLY-TNTDALNRYKQTPLMVAAMNGKLSCVKKLIESG 105
            + LH+A   G +  +  L++ F       D  N  +QTPL +A +      V +L+ + 
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL-PSVVRLLVTA 62

Query: 106 AFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSR------------- 152
                     G+T  H A  +    CL+ALL +A    +                     
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 153 -------------FVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGS 199
                           +  +SG +PL  A        V  LL +GA   +      Y GS
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA----QMYSGS 178

Query: 200 TPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH 243
           + LH A+  G L  +R L+  GAD    +     P  +A   + 
Sbjct: 179 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 79  NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTA 138
            +  ++PL+ A  N  LS V+ L++ GA +       G + LH A+  G    ++ L+ +
Sbjct: 141 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGLLPLVRTLVRS 199

Query: 139 ARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECV 177
                 A+        ++++    TPL +A  +   + +
Sbjct: 200 G-----AD-------SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 29/131 (22%), Positives = 39/131 (29%), Gaps = 12/131 (9%)

Query: 116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSE 175
           G T LH A   G+   +  L+   +             ++I +    TPLHLA       
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRE--------LDIYNNLRQTPLHLAVITTLPS 54

Query: 176 CVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPY 235
            V  L+       +S       G T  H A    S  C+R LL   A             
Sbjct: 55  VVRLLVTA----GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 110

Query: 236 AIALKYKHQAC 246
             AL       
Sbjct: 111 LTALHVAVNTE 121

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 8e-07
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 50  LHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFIL 109
           L  A     + ++ +LL                 + L  A+  G L  V+ L+ SGA   
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQ---MYSGSSALHSASGRGLLPLVRTLVRSGADS- 203

Query: 110 NFDSLQGRTCLHYAAYYGHSDCLQ 133
           +  +    T L  A      D L+
Sbjct: 204 SLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 28/103 (27%), Positives = 41/103 (39%)

Query: 159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
           E G TPLH+A  QG    VH L++                 TPLH A        +R L+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 219 AWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWP 261
             GA  +  D  G+    +A +++   C   L  S+A   +  
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 103

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 3   QRMSCRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVL 62
                 +   S L  AVEN  L M++ +++    V      Y   SALH A+  G + ++
Sbjct: 136 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV--NAQMYSGSSALHSASGRGLLPLV 193

Query: 63  SMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVK 99
             L+       ++   N +  TPLMVA     +  ++
Sbjct: 194 RTLVRS---GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 6e-12
 Identities = 35/221 (15%), Positives = 60/221 (27%), Gaps = 31/221 (14%)

Query: 49  ALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI 108
            LH A    +   +  LL      +     ++  + PL  +           L+     +
Sbjct: 3   PLHQACMENEFFKVQELLHSKP--SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 109 LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVN------------- 155
              D         +       +         R          ++ V              
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 156 ------------IRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
                       I+D+    PLH AA  G  + +  L   G  A +     G+   TPL 
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW---TPLF 177

Query: 204 FAARGGSLECIRELL-AWGADRVQPDAFGRIPYAIALKYKH 243
            A   G  +    L+  +GA+    D  G     +AL  + 
Sbjct: 178 HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQV 218

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 3e-10
 Identities = 44/233 (18%), Positives = 75/233 (32%), Gaps = 30/233 (12%)

Query: 14  ALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYT 73
            L  A    +   ++ ++ + P++L      G +  LH + ++   E+ S LL +     
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 74  NTDALNRYKQTPLMVAAMNGKLSCVK-KLIESGAFILNFDSLQGRTCLHYAAYYGHSDCL 132
             D  +    TP  +A   G L  VK          LN  + QG TCLH A      +  
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 133 QALLTAARTSPVANTWGFS----------------------RFVNIRDESGATPLHLAAR 170
           Q L+    +  + + +                           VN +D+ G TPL  A  
Sbjct: 122 QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 181

Query: 171 QGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD 223
           +G  +    L++            G         A      +  +  L    D
Sbjct: 182 EGHGDAAVLLVEKYGAEYDLVDNKGA---KAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 9e-10
 Identities = 49/194 (25%), Positives = 66/194 (34%), Gaps = 31/194 (15%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
            PL  A M  +   V++L+ S   +L      GR  LH++  +   +    LL+      
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 144 VANTWGFSRFV--------------------------NIRDESGATPLHLAARQGWSECV 177
           + +    S +                           N     G T LHLA  + W E  
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 121

Query: 178 HTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQ-PDAFGRIPYA 236
             L++NGA               PLH AA  GSL+ I  L   G   V   D  G  P  
Sbjct: 122 QFLIENGASVRIKD----KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 177

Query: 237 IALKYKHQACAALL 250
            AL   H   A LL
Sbjct: 178 HALAEGHGDAAVLL 191

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.7 bits (148), Expect = 1e-11
 Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 29/214 (13%)

Query: 60  EVLSMLLDQFFLYTNTDA-LNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRT 118
           +V+S LL Q       +A +++  +T L +AA   +    K+L+++GA   + D+     
Sbjct: 3   QVISDLLAQ---GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTP 59

Query: 119 CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRF---------------------VNIR 157
                A          L   A         G +                       +N  
Sbjct: 60  LHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAA 119

Query: 158 DESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL 217
           D SG T LH AA    +E V+ LL +     ++         TPL  AAR GS E  + L
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMH----HANRDAQDDKDETPLFLAAREGSYEASKAL 175

Query: 218 LAWGADRVQPDAFGRIPYAIALKYKHQACAALLN 251
           L   A+R   D   R+P  +A +  H     LL+
Sbjct: 176 LDNFANREITDHMDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 174 SECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAW 220
           ++ +  LL  GA   ++    G    T LH AAR    +  + LL  
Sbjct: 2   AQVISDLLAQGAELNATMDKTGE---TSLHLAARFARADAAKRLLDA 45

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.4 bits (127), Expect = 3e-09
 Identities = 22/149 (14%), Positives = 36/149 (24%), Gaps = 19/149 (12%)

Query: 43  GYGKQSALHLAAAYGQIEVLSMLLDQ---FFLYTNTDALNRYKQTPLMVAAMN---GKLS 96
              K  +L  A     I  L                   +   +T L +A  +     L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 97  CVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNI 156
            V  L+++   +            +                                + I
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL-------------KLLLRGKASIEI 109

Query: 157 RDESGATPLHLAARQGWSECVHTLLDNGA 185
            +ESG TPL +A R     C   L    +
Sbjct: 110 ANESGETPLDIAKRLKHEHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 5e-09
 Identities = 20/154 (12%), Positives = 31/154 (20%), Gaps = 18/154 (11%)

Query: 79  NRYKQTPLMVAAMNGKLSCVKKLIESGA-----FILNFDSLQGRTCLHYAAYYGHSDCLQ 133
              K   L  A     +  + +    G        L        T LH A        L 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 134 ALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGG 193
            +    + S   +         +                  +    + +           
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES--------- 113

Query: 194 NGYPGSTPLHFAARGGSLECIRELLAWGADRVQP 227
               G TPL  A R     C   L    + R   
Sbjct: 114 ----GETPLDIAKRLKHEHCEELLTQALSGRFNS 143

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 30/129 (23%), Positives = 43/129 (33%), Gaps = 5/129 (3%)

Query: 14  ALFVAVENGD----LQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
           +L  AV+  D    LQ     V+    +         ++ALHLA        L ++    
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV 68

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
               N D       T L    +     C+K L+   A I   +   G T L  A    H 
Sbjct: 69  QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHE 127

Query: 130 DCLQALLTA 138
            C + L  A
Sbjct: 128 HCEELLTQA 136

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 2e-08
 Identities = 27/158 (17%), Positives = 44/158 (27%), Gaps = 19/158 (12%)

Query: 44  YGKQSALHLAAAYGQIEVLSMLLDQ-----------------FFLYTNTDALNRYKQTPL 86
           +G  + L  AAA G +E L+ LL                     L     A     +   
Sbjct: 1   WG--NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGAN 58

Query: 87  MVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVAN 146
                    + +     +G        L+ +  ++     G+     A            
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 147 TWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNG 184
               +  V  R+  G T   LA   G +E V  +  NG
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 27/155 (17%), Positives = 38/155 (24%), Gaps = 18/155 (11%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
             L  AA  G L  +  L+++   + N  +  GRT L            + LL  A    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 61

Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP------ 197
              T         R     T   L   Q          +      +  G           
Sbjct: 62  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 121

Query: 198 -----------GSTPLHFAARGGSLECIRELLAWG 221
                      G T    A   G  E +  + A G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 9e-04
 Identities = 11/47 (23%), Positives = 16/47 (34%)

Query: 200 TPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQAC 246
             L  AA  G LE +  LL    +    + FGR    +      +  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIA 49

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 3e-08
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 14/139 (10%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
             L+ +++ G+   V+++I         +        +                      
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIV------------ 50

Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
                 F   VN  D  G TPLH AA     +    L+++GA   + T  +    +    
Sbjct: 51  -KFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ-TAADKC 108

Query: 204 FAARGGSLECIRELLAWGA 222
                G  +C + L     
Sbjct: 109 EEMEEGYTQCSQFLYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 19/138 (13%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 48  SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAF 107
           + L  ++  G+ +++  ++ +    +    L   +    +  A+    + + K +     
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPS----LPNDEGITALHNAVCAGHTEIVKFLVQFGV 58

Query: 108 ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHL 167
            +N     G T LH AA   +    + L+ +      A  +     +   D   A     
Sbjct: 59  NVNAADSDGWTPLHCAASCNNVQVCKFLVESG-----AAVFA----MTYSDMQTAADKCE 109

Query: 168 AARQGWSECVHTLLDNGA 185
              +G+++C   L     
Sbjct: 110 EMEEGYTQCSQFLYGVQE 127

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 3e-08
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 25/155 (16%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
             L  AA  G +  V++L+       +  +  G+T L    +   +  L+ L   A  + 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 144 VANTWGFSRF--------------------VNIRDESGATPLHLAARQGWSECVHTLLDN 183
              +                          VN+ D +GA P+HLA ++G +  V  L   
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123

Query: 184 GALACSSTGGNGYPGSTPLHFAARGGSLECIRELL 218
             L      G      TPL  A + G+ + +  L 
Sbjct: 124 SDLHRRDARGL-----TPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-08
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 19/173 (10%)

Query: 10  RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF 69
           R+   L  A   GD+Q +  ++  +       + +GK +   +      I +  +     
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 70  FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS 129
               +T   +              K+             +N     G   +H A   GH+
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHG------ADVNVPDGTGALPIHLAVQEGHT 114

Query: 130 DCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLD 182
             +  L   +              ++ RD  G TPL LA ++G  + V  L  
Sbjct: 115 AVVSFLAAESD-------------LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (117), Expect = 6e-08
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 18/167 (10%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
             L+ AA  G+   V+ L+ +GA         G + LH AA YGH    +          
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDW--LGTSPLHLAAQYGHFSTTE---------- 51

Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
                      + R +   TPLH+AA +G +  V  LL +GA   +          T LH
Sbjct: 52  --VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA----KDMLKMTALH 105

Query: 204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL 250
           +A      E +  L+ +GAD      F +  + I++   ++  A +L
Sbjct: 106 WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 18/148 (12%), Positives = 34/148 (22%), Gaps = 16/148 (10%)

Query: 49  ALHLAAAYGQIEVLSMLLDQ------------FFLYTNTDALNRYKQTPLMVAAMNGKLS 96
            L  AA  GQ + + +L+                            +  L         +
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 97  CVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP----VANTWGFSR 152
            V +     A      ++      H A            L  A        V     +  
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124

Query: 153 FVNIRDESGATPLHLAARQGWSECVHTL 180
            V+ + +   T   ++   G  +    L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
           S  +LC IC EN   ++I+PCGH MC  C  +    +             CPFCRC I
Sbjct: 21  STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG----------CPFCRCEI 68

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-05
 Identities = 25/136 (18%), Positives = 36/136 (26%), Gaps = 17/136 (12%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
             L  AA  G++  V+ L+E+GA     +S   R              L  L  A     
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
              T         R+    T + L       +                      G  P+ 
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD-----------------AWGRLPVD 107

Query: 204 FAARGGSLECIRELLA 219
            A   G  +  R L A
Sbjct: 108 LAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-05
 Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 6/131 (4%)

Query: 9   ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQ 68
           E S   L  A   G ++ + A++EA        S   +   + +  +    E+L +   +
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 69  FFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGH 128
                                     +             L+     GR  +  A   GH
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAG------ARLDVRDAWGRLPVDLAEELGH 114

Query: 129 SDCLQALLTAA 139
            D  + L  AA
Sbjct: 115 RDVARYLRAAA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.003
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 197 PGSTPLHFAARGGSLECIRELLAWGA 222
           P +  L  AA  G +E +R LL  GA
Sbjct: 2   PSADWLATAAARGRVEEVRALLEAGA 27

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 318 ASDVELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
           A+  E C IC E+     +  PC H  C  C           I   + + P CP C+  +
Sbjct: 2   ATVAERCPICLEDPSNYSMALPCLHAFCYVC-----------ITRWIRQNPTCPLCKVPV 50

Query: 377 ANLV 380
            ++V
Sbjct: 51  ESVV 54

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 304 TSPSDAEVDDNTSEASDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAV 363
           ++    EV +  +    +  C IC E +       C H  C  C L L   KK       
Sbjct: 4   SALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK------- 56

Query: 364 PEVPACPFCRCSIA--NLVAARIINSATE 390
                CP C+  I   +L  +   +   E
Sbjct: 57  -GPSQCPLCKNDITKRSLQESTRFSQLVE 84

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 13/53 (24%), Positives = 13/53 (24%), Gaps = 10/53 (18%)

Query: 324 CCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI 376
           C IC   L       C H  C  C L                   CP CR   
Sbjct: 26  CQICEHILADPVETSCKHLFCRICILRCLKVMGSY----------CPSCRYPC 68

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 28/135 (20%), Positives = 37/135 (27%), Gaps = 21/135 (15%)

Query: 84  TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSP 143
              M A  NG L  VK  +  G  +        +   + A                    
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEIL------------ 51

Query: 144 VANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH 203
                     +N  D+   TPL  A  +G   CV  LL  GA            G T L 
Sbjct: 52  -EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG----PDGLTALE 106

Query: 204 FAARGGSLECIRELL 218
                   + I+ LL
Sbjct: 107 ATDN----QAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	460
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.98
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.98
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.05
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.95
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.83
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.81
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.78
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.76
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.7
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.7
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.51
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.47
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.41
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.36
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.29
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.15
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.09
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.43
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	94.36
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	91.35

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-38  Score=287.00  Aligned_cols=220  Identities=27%  Similarity=0.301  Sum_probs=204.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHH
Q 012618           11 SESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAA   90 (460)
Q Consensus        11 g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~   90 (460)
                      +.+.|+.+|+.|+++.|+.+|+.++..... .|.+|+||||+|+..|+.+++++|++.   +......+..+.++++.++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~-~D~~G~TpLh~Aa~~g~~e~~~~l~~~---~~~~~~~~~~~~~~~~~~~   78 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATR-TDQDSRTALHWACSAGHTEIVEFLLQL---GVPVNDKDDAGWSPLHIAA   78 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHH---TCCSCCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcC-cCCCCCCHHHHHHHhhhhccccccccc---ccccccccccccccccccc
Confidence            457899999999999999999887665443 467899999999999999999999999   8888888889999999999


Q ss_pred             HcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHH
Q 012618           91 MNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAAR  170 (460)
Q Consensus        91 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~  170 (460)
                      ..++.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.|.+            ++.++..|.||||+|+.
T Consensus        79 ~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d------------~~~~~~~~~t~L~~a~~  145 (223)
T d1uoha_          79 SAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------------PDAKDHYEATAMHRAAA  145 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHH
T ss_pred             cccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC------------CCCcCCCCCccchhhhh
Confidence            999999999999999987 77889999999999999999999999999988            78899999999999999


Q ss_pred             cCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhh
Q 012618          171 QGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL  250 (460)
Q Consensus       171 ~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~L  250 (460)
                      .++.+++++|++.|.    +.+..|..|+||||+|+..|+.++|++|+++|+|++.+|.+|+||||+| ..++.+++++|
T Consensus       146 ~~~~~~~~~L~~~~~----~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~L  220 (223)
T d1uoha_         146 KGNLKMIHILLYYKA----STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRM  220 (223)
T ss_dssp             TTCHHHHHHHHHTTC----CSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHH
T ss_pred             cCCcchhhhhccccc----eeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcc
Confidence            999999999999999    5677788999999999999999999999999999999999999999998 57999999999


Q ss_pred             CC
Q 012618          251 NP  252 (460)
Q Consensus       251 l~  252 (460)
                      ++
T Consensus       221 l~  222 (223)
T d1uoha_         221 VE  222 (223)
T ss_dssp             HC
T ss_pred             cC
Confidence            76

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-38  Score=311.60  Aligned_cols=261  Identities=27%  Similarity=0.317  Sum_probs=217.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHc
Q 012618           13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMN   92 (460)
Q Consensus        13 t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~   92 (460)
                      ||||+||..|+.++|++|+++|++++..  +..|+||||+|+..|+.++|++||++   |++++.++..|+||||+|+..
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~---gadi~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQN---KAKVNAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCS--SSCCCCHHHHHHHHTCHHHHHHHHHH---TCCSSCCCTTSCCHHHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHC---cCCCCCCCCCCCCHHHHHHHc
Confidence            7899999999999999999998887543  46788999999999999999999988   888888888889998888887


Q ss_pred             CCHHHHHHHH------------------------------------------------------------------HcCC
Q 012618           93 GKLSCVKKLI------------------------------------------------------------------ESGA  106 (460)
Q Consensus        93 g~~~~v~~Ll------------------------------------------------------------------~~g~  106 (460)
                      |+.+++++|+                                                                  +.|+
T Consensus        77 g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~  156 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA  156 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCC
Confidence            7666655554                                                                  4444


Q ss_pred             ccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCC------------------------------------
Q 012618          107 FILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGF------------------------------------  150 (460)
Q Consensus       107 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~------------------------------------  150 (460)
                      ++ +..+..|.+|||+|+..|+.+++++|+..+++.......+.                                    
T Consensus       157 ~~-~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         157 HP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             CT-TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CC-CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence            44 45567889999999999999999999998876543222211                                    


Q ss_pred             ------------------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHH
Q 012618          151 ------------------SRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLE  212 (460)
Q Consensus       151 ------------------~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~  212 (460)
                                        ...++..+..|.|||+.|+..++.+++++|+++|+    +.+..+..+.||||.|+..++.+
T Consensus       236 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~----~~~~~~~~~~t~L~~~~~~~~~~  311 (408)
T d1n11a_         236 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV----MVDATTRMGYTPLHVASHYGNIK  311 (408)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTC----CTTCCCSSCCCHHHHHHHSSCSH
T ss_pred             HHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCC----ccccccccccccchhhcccCcce
Confidence                              11245667888999999999999999999999999    45556677899999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHH
Q 012618          213 CIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKA  292 (460)
Q Consensus       213 ~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~  292 (460)
                      ++++|++.|++++.+|.+|.||||+|+++|+.+++++|+++||+++.          .+.+|+|+|+.|++.++.+.++.
T Consensus       312 ~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~----------~d~~G~t~L~~A~~~~~~~iv~~  381 (408)
T d1n11a_         312 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE----------VSSDGTTPLAIAKRLGYISVTDV  381 (408)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC----------CCSSSCCHHHHHHHTTCHHHHHH
T ss_pred             eeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----------CCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999997664          56678999999999999888875


Q ss_pred             h
Q 012618          293 I  293 (460)
Q Consensus       293 l  293 (460)
                      +
T Consensus       382 L  382 (408)
T d1n11a_         382 L  382 (408)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.3e-38  Score=291.67  Aligned_cols=240  Identities=22%  Similarity=0.177  Sum_probs=185.6

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcH
Q 012618            7 CRERSESALFVAVENGDLQMIEAMVEADPTVLG-MTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTP   85 (460)
Q Consensus         7 ~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~-~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tp   85 (460)
                      .+++|.||||+||++|+.++|++|+++|++... ...+..|.||||+|+..|+.+++++|+++   |++++..|..|.||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~---ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA---GAGVLVAERGGHTA   81 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCTTSCCH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccc---cccccccccccchh
Confidence            578999999999999999999999999887542 23456889999999999999999999999   99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc--CCHHHHHHHHHh---cCCCCCcccCCCccccccCCCC
Q 012618           86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY--GHSDCLQALLTA---ARTSPVANTWGFSRFVNIRDES  160 (460)
Q Consensus        86 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~---~~~~~~~~~~~~~~~v~~~d~~  160 (460)
                      ||+|+..++.+++++|++.+.......    ...+......  ........++..   ...............++.+|..
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~  157 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDA----SDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD  157 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------------CCCGGGGTTCCCTT
T ss_pred             hhhhhccCchHHHHHHHhhccchhccc----chhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccccccccc
Confidence            999999999999999998765431111    1111110000  000000000000   0000001111223347889999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 012618          161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALK  240 (460)
Q Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~  240 (460)
                      |.||||+|+..++.+++++|++++++.+   ...+..|.||||+|++.|+.++|++|+++|++++.+|..|+||||+|+.
T Consensus       158 g~TpLh~A~~~~~~~~v~~Ll~~~~~~~---~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~  234 (255)
T d1oy3d_         158 GHTPLHVAVIHKDAEMVRLLRDAGADLN---KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL  234 (255)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCTT---CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred             Ccccccccccccccccccchhccccccc---ccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999999999998543   2345789999999999999999999999999999999999999999999


Q ss_pred             hChHHHHHhhCCCCCC
Q 012618          241 YKHQACAALLNPSSAE  256 (460)
Q Consensus       241 ~~~~~i~~~Ll~~ga~  256 (460)
                      +++.+++++|+++||+
T Consensus       235 ~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         235 RPNPILARLLRAHGAP  250 (255)
T ss_dssp             SSCHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHcCCC
Confidence            9999999999999994

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-35  Score=270.88  Aligned_cols=222  Identities=25%  Similarity=0.297  Sum_probs=198.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCc---cCCCCCCcHHHHH
Q 012618           13 SALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTD---ALNRYKQTPLMVA   89 (460)
Q Consensus        13 t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~---~~~~~g~tpL~~A   89 (460)
                      +|||+||+.|+.+.|+.||+.++.... ..+.+|.||||+|+..|+.+++++||++   |++++   ..+..|.+|+|++
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~-~~d~~G~TpL~~A~~~g~~~iv~~Ll~~---ga~~~~~~~~~~~~~~~~~~~   77 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLL-QKDQDGRIPLHWSVSFQAHEITSFLLSK---MENVNLDDYPDDSGWTPFHIA   77 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTT---CTTCCGGGCCCTTSCCHHHHH
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCCHHHHHHHcCCccccchhhhh---hcccccccccccccccccccc
Confidence            799999999999999999997765443 3457899999999999999999999999   88876   4567899999999


Q ss_pred             HHcCCHHHHHHHHHcCCcc-ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHH
Q 012618           90 AMNGKLSCVKKLIESGAFI-LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA  168 (460)
Q Consensus        90 ~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A  168 (460)
                      +..+..++++.++..+... ....+..+.|+|+.++..++.+++++|+..+..            .+..|..|+||||+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~------------~~~~~~~g~t~l~~a  145 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS------------VRIKDKFNQIPLHRA  145 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC------------SCCCCTTSCCHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc------------ccccCCCCCCccchh
Confidence            9999999999999988754 344567889999999999999999999999887            788899999999999


Q ss_pred             HHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhChHHHH
Q 012618          169 ARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLA-WGADRVQPDAFGRIPYAIALKYKHQACA  247 (460)
Q Consensus       169 ~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~~G~tpL~~A~~~~~~~i~  247 (460)
                      +..|+.+++++|++.+.   ...+.+|..|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|+.   .+++
T Consensus       146 ~~~~~~~~~~~Ll~~~~---~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~  219 (229)
T d1ixva_         146 ASVGSLKLIELLCGLGK---SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVK  219 (229)
T ss_dssp             HHHTCHHHHHHHHTTTC---CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHH
T ss_pred             hhccccccccccccccc---ccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHH
Confidence            99999999999999875   2556778899999999999999999999996 599999999999999999984   4799


Q ss_pred             HhhCCCCCC
Q 012618          248 ALLNPSSAE  256 (460)
Q Consensus       248 ~~Ll~~ga~  256 (460)
                      ++|+++|+|
T Consensus       220 ~~Ll~~g~d  228 (229)
T d1ixva_         220 KFFLNNVVD  228 (229)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHcCCC
Confidence            999999985

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=263.73  Aligned_cols=220  Identities=27%  Similarity=0.261  Sum_probs=200.0

Q ss_pred             ccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHc
Q 012618           47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYY  126 (460)
Q Consensus        47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  126 (460)
                      ++.|+.++..|+.+.|+.+|...  +..++.+|..|+||||+|+..|+.+++++|+..+... ...+..+.++++.++..
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~--~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILAD--KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHC--GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhC--CCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccc
Confidence            58999999999999997777652  7789999999999999999999999999999999887 55556889999999999


Q ss_pred             CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHH
Q 012618          127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAA  206 (460)
Q Consensus       127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~  206 (460)
                      ++.+++++|++.+.+            ++.+|..|.||||+|+..|+.+++++|+++|+    +++..+..|.||||+|+
T Consensus        81 ~~~~i~~~Ll~~~~d------------~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~----d~~~~~~~~~t~L~~a~  144 (223)
T d1uoha_          81 GRDEIVKALLGKGAQ------------VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA----NPDAKDHYEATAMHRAA  144 (223)
T ss_dssp             TCHHHHHHHHHTTCC------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHH
T ss_pred             cccchhHHHhccCce------------eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCC----CCCCcCCCCCccchhhh
Confidence            999999999999987            78999999999999999999999999999999    55667889999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHhhhh
Q 012618          207 RGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALMESN  286 (460)
Q Consensus       207 ~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~  286 (460)
                      ..++.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|+++..          .+..++++|+.| ..+.
T Consensus       145 ~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~----------~d~~g~tpl~~A-~~~~  213 (223)
T d1uoha_         145 AKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI----------ENKEEKTPLQVA-KGGL  213 (223)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC----------CCTTSCCHHHHC-CTTH
T ss_pred             hcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCC----------CCCCCCCHHHHH-HCCC
Confidence            99999999999999999999999999999999999999999999999997654          566788899988 4678


Q ss_pred             HHHHHHhhhc
Q 012618          287 EEREKAILNE  296 (460)
Q Consensus       287 ~~~~~~ll~~  296 (460)
                      .++++.++++
T Consensus       214 ~~i~~~Ll~~  223 (223)
T d1uoha_         214 GLILKRMVEG  223 (223)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHhcccCC
Confidence            8888888753

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=5.7e-36  Score=282.07  Aligned_cols=232  Identities=21%  Similarity=0.248  Sum_probs=152.1

Q ss_pred             cHHHHHHH-cCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhcc-----CCCCCCccCCCCCCcHH
Q 012618           13 SALFVAVE-NGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQF-----FLYTNTDALNRYKQTPL   86 (460)
Q Consensus        13 t~L~~Aa~-~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~-----~~~~~~~~~~~~g~tpL   86 (460)
                      ||||+|++ .|+.++++.|.+.+.+...   ..+|+||||+|+.+|+.++|++|+.+.     ..|+++|.+|.+|.|||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~---~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID---PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC---CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC---CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            45553333 3445555555454444321   123556666666666555555443210     01555666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCC---CC-------------------
Q 012618           87 MVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS---PV-------------------  144 (460)
Q Consensus        87 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~---~~-------------------  144 (460)
                      |+|+..|+.++|++|+++|+++ +..+..|.|||++|+..++.++++++.......   ..                   
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             cccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            6666666666666666666554 444555666666666666555555554332100   00                   


Q ss_pred             -------------cccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCccccCCCCCCCCCChHHHHHHhcCC
Q 012618          145 -------------ANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLD-NGALACSSTGGNGYPGSTPLHFAARGGS  210 (460)
Q Consensus       145 -------------~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~d~~g~TpLh~A~~~g~  210 (460)
                                   ..........+..+..|.||||+++..++.+++++++. .+.    ..+.+|..|+||||+|++.|+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~----~~~~~d~~g~tpL~~A~~~g~  233 (277)
T d2fo1e1         158 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS----NKDKQDEDGKTPIMLAAQEGR  233 (277)
T ss_dssp             HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC----CTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccCCCCccccccccccccccccccccccc----cccccCCCCCCHHHHHHHcCC
Confidence                         00001112256678899999999999999999998664 555    556678899999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCC
Q 012618          211 LECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNP  252 (460)
Q Consensus       211 ~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~  252 (460)
                      .++|++|+++|+|++.+|..|+||||+|+++|+.+++++|++
T Consensus       234 ~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         234 IEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999975

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=5.9e-35  Score=277.57  Aligned_cols=228  Identities=23%  Similarity=0.248  Sum_probs=196.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHH
Q 012618            9 ERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMV   88 (460)
Q Consensus         9 ~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~   88 (460)
                      ..+.|+|+.||..|++++|++||++|++++..  +.+|.||||+|+..|+.++|++|+++   +.+.+..+..+.|||++
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~--d~~G~T~L~~A~~~g~~eiv~~Ll~~---~~~~~~~~~~~~~~L~~  112 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYA--NVDGLTALHQACIDDNVDMVKFLVEN---GANINQPDNEGWIPLHA  112 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcc--CCCCCcHHHHHHhcCCceeeeeeccc---ccccccccccccccccc
Confidence            34568999999999999999999999998543  56899999999999999999999999   89999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccC---------------CCccc
Q 012618           89 AAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTW---------------GFSRF  153 (460)
Q Consensus        89 A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~---------------~~~~~  153 (460)
                      |+..++.++++.|++.|+.. ...+..+.+++++|+..++.++++.++............               .....
T Consensus       113 a~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (291)
T d1s70b_         113 AASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN  191 (291)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             cccccccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence            99999999999999999876 677789999999999999999999998764331100000               00111


Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 012618          154 VNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRI  233 (460)
Q Consensus       154 v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~t  233 (460)
                      ....+..|.||||+|+..|+.+++++|++.|+    +++.++..|+||||+|+..|+.++|++|+++|+|++.+|..|+|
T Consensus       192 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~----din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~T  267 (291)
T d1s70b_         192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARY----DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT  267 (291)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccccCCCCChhhHHHHcCChhhhccccccee----cccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            35577899999999999999999999999999    55667889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhChHHHHHhh
Q 012618          234 PYAIALKYKHQACAALL  250 (460)
Q Consensus       234 pL~~A~~~~~~~i~~~L  250 (460)
                      |||+|++    +++++|
T Consensus       268 aL~~A~e----~~~~~L  280 (291)
T d1s70b_         268 AFDVADE----DILGYL  280 (291)
T ss_dssp             TTTSCCS----GGGHHH
T ss_pred             HHHHHHH----HHHHHH
Confidence            9999975    455555

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=266.54  Aligned_cols=231  Identities=27%  Similarity=0.308  Sum_probs=185.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccC-----------
Q 012618           10 RSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDAL-----------   78 (460)
Q Consensus        10 ~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-----------   78 (460)
                      ++.|+|+.|++.|++++|++||++|++++... +..|.||||+|+..|+.+++++|++.   +...+..           
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~-~~~g~tpL~~A~~~~~~eiv~~L~~~---~~~~~~~~~~~~~~~~~~   79 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRH---GADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccC-CCCCCCHHHHHHHcCCHHHhhhhccc---cccccccccccchhhHHH
Confidence            35689999999999999999999999986543 35789999999999999999999987   4444333           


Q ss_pred             ----------------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCcc---------ccCCCCCCChHHHHHHHcC
Q 012618           79 ----------------------NRYKQTPLMVAAMNGKLSCVKKLIESGAFI---------LNFDSLQGRTCLHYAAYYG  127 (460)
Q Consensus        79 ----------------------~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~---------~~~~~~~g~t~L~~A~~~g  127 (460)
                                            +..+.|+|+.|+..++..+++.++....++         .......|.||||+|+..|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T d1wdya_          80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             hhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcC
Confidence                                  344566677777777777777666654433         1122345788888888888


Q ss_pred             CHHHHHHHHHh-cCCCCCcccCCCccccccCCCCCCCHHHHHHHcC----CHHHHHHHHHcCCccccCCCCCCCCCChHH
Q 012618          128 HSDCLQALLTA-ARTSPVANTWGFSRFVNIRDESGATPLHLAARQG----WSECVHTLLDNGALACSSTGGNGYPGSTPL  202 (460)
Q Consensus       128 ~~~iv~~Ll~~-~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g----~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpL  202 (460)
                      +.+++++|++. +++            ++..+..|.++++.+...+    ..+++++|+++|+    +.+.++..|.|||
T Consensus       160 ~~~~~~~Ll~~~~~~------------i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga----~~n~~~~~g~t~L  223 (285)
T d1wdya_         160 HVEVLKILLDEMGAD------------VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA----DVNVRGERGKTPL  223 (285)
T ss_dssp             CHHHHHHHHHTSCCC------------TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC----CSSCCCTTSCCHH
T ss_pred             CHHHHHHHHhccCCC------------cccccCCCCcccccccccccchHHHHHHHHHHHCCC----CCCccCCCCCCcc
Confidence            88888888865 333            6777888888777765543    3468888888888    4456778899999


Q ss_pred             HHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcc
Q 012618          203 HFAARGGSLECIRELLAW-GADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVW  260 (460)
Q Consensus       203 h~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~  260 (460)
                      |+|++.|+.++|++||++ |++++.+|.+|.||||+|+++++.+++++|+++||+++..
T Consensus       224 ~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             chhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            999999999999999985 9999999999999999999999999999999999998754

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-32  Score=269.57  Aligned_cols=230  Identities=27%  Similarity=0.335  Sum_probs=183.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCC--------
Q 012618            8 RERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALN--------   79 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~--------   79 (460)
                      +..+.++|+.|+..++.++|++|++++.+++..  +.+|.+|||+|+..|+.+++++|+++   |++++..+        
T Consensus       129 ~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~--~~~~~~~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~~~t~l~  203 (408)
T d1n11a_         129 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPR---GGSPHSPAWNGYTPLH  203 (408)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CSSCCCHHHHHHHTTCHHHHHHHGGG---TCCSCCCCTTCCCHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCCCcC--CCcCchHHHHHHHcCCHHHHHHHHhc---CCcccccCCCCCCcch
Confidence            345667777777777777777777777666433  34566777777777777777777776   66555444        


Q ss_pred             -------------------------CCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHH
Q 012618           80 -------------------------RYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQA  134 (460)
Q Consensus        80 -------------------------~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~  134 (460)
                                               ..|.||||+|+..++.+++++++..+... +..+..|.|||+.|+..++.+++++
T Consensus       204 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~a~~~~~~~i~~~  282 (408)
T d1n11a_         204 IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADV  282 (408)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             hhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccc-ccccCCCCChhhhhhhcCcHHHHHH
Confidence                                     44556666666667777777777766655 5566778888888888888888888


Q ss_pred             HHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHH
Q 012618          135 LLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECI  214 (460)
Q Consensus       135 Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v  214 (460)
                      |++.+++            ++..+..+.||||.++..++.++++++++.|+    +.+.+|..|.||||+|++.|+.++|
T Consensus       283 Ll~~g~~------------~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~----~in~~d~~G~T~Lh~A~~~g~~~iv  346 (408)
T d1n11a_         283 LIKHGVM------------VDATTRMGYTPLHVASHYGNIKLVKFLLQHQA----DVNAKTKLGYSPLHQAAQQGHTDIV  346 (408)
T ss_dssp             HHHHTCC------------TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHCCCc------------cccccccccccchhhcccCcceeeeeeccccc----cccccCCCCCCHHHHHHHcCCHHHH
Confidence            8888877            78888999999999999999999999999999    5667788999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhh---CCCCCCCCc
Q 012618          215 RELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL---NPSSAEPLV  259 (460)
Q Consensus       215 ~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~L---l~~ga~~~~  259 (460)
                      ++|+++|||++.+|.+|+||||+|+++|+.+++++|   +..+++..+
T Consensus       347 ~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~  394 (408)
T d1n11a_         347 TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV  394 (408)
T ss_dssp             HHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC-
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhccccccc
Confidence            999999999999999999999999999999998755   556654443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-33  Score=258.46  Aligned_cols=240  Identities=25%  Similarity=0.254  Sum_probs=179.5

Q ss_pred             CCCCccHHHHHHHcCcHHHHHHHHhccCCCCC---CccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChH
Q 012618           43 GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTN---TDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTC  119 (460)
Q Consensus        43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~---~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~  119 (460)
                      +.+|.||||+|+..|+.+++++||+.   +++   ++.+|..|.||||+|+..|+.+++++|++.|+++ +..+..|.||
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~---~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tp   81 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGF---SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTA   81 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHH---HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHc---CCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchh
Confidence            36899999999999999999999998   766   6678899999999999999999999999999998 7788999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCC
Q 012618          120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGS  199 (460)
Q Consensus       120 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~  199 (460)
                      ||+|+..++.+++++|++............+  .....+....+.+..+...............-.......+.++..|.
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTY--LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhh--hhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            9999999999999999987654221111000  01111112222222222221111111122222222335677889999


Q ss_pred             hHHHHHHhcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHH
Q 012618          200 TPLHFAARGGSLECIRELLAWGADRVQP-DAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELL  278 (460)
Q Consensus       200 TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L  278 (460)
                      ||||+|+..++.++|++|++++++.+.. +..|.||||+|+..++.+++++|+++|++++.          .+..++++|
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~----------~d~~g~t~L  229 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA----------RMYGGRTPL  229 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHH
T ss_pred             ccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCC----------CCCCCCCHH
Confidence            9999999999999999999999998865 67899999999999999999999999996653          566788999


Q ss_pred             HHHHhhhhHHHHHHhhhccc
Q 012618          279 EKALMESNEEREKAILNETI  298 (460)
Q Consensus       279 ~~a~~~~~~~~~~~ll~~~~  298 (460)
                      +.|+...+.+.++.|++...
T Consensus       230 ~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         230 GSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             HHHHTSSCHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHHcCC
Confidence            99999999999999997554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-32  Score=243.65  Aligned_cols=220  Identities=26%  Similarity=0.324  Sum_probs=196.2

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCc
Q 012618            9 ERSESALFVAVENGDLQMIEAMVE----ADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQT   84 (460)
Q Consensus         9 ~~g~t~L~~Aa~~g~~~~vk~Ll~----~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~t   84 (460)
                      ++|.||||+||..|+.++|+.|++    .|.+++..  +.+|.||||+|+..|+.+++++|+++   +++++.....|.+
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~--d~~g~TpL~~A~~~~~~~iv~~Ll~~---ga~~~~~~~~~~~   75 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVVRLLVTA---GASPMALDRHGQT   75 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCcc--CCCCCccceehhcccccccccccccc---ccccccccccccc
Confidence            579999999999999999999985    67777443  46899999999999999999999999   9999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCc---cccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCC
Q 012618           85 PLMVAAMNGKLSCVKKLIESGAF---ILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESG  161 (460)
Q Consensus        85 pL~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g  161 (460)
                      +++.|...++.++++.+......   ..+.......++|+.+.........+.|.......           .......+
T Consensus        76 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~  144 (228)
T d1k1aa_          76 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-----------DAVDIKSG  144 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-----------TCCCTTTC
T ss_pred             ccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccc-----------ccccccch
Confidence            99999999999999988876443   22444567789999999999999999998876653           45567789


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Q 012618          162 ATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKY  241 (460)
Q Consensus       162 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~  241 (460)
                      .++|+.|+..+...+++++++.|.    ....+|..|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+++
T Consensus       145 ~~~l~~a~~~~~~~~~~~~~~~~~----~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~  220 (228)
T d1k1aa_         145 RSPLIHAVENNSLSMVQLLLQHGA----NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR  220 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTC----CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSH
T ss_pred             hhHHHHHHHhhhhhhhhhhhhhcc----ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhC
Confidence            999999999999999999999998    5667788999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHH
Q 012618          242 KHQACAA  248 (460)
Q Consensus       242 ~~~~i~~  248 (460)
                      ++.++++
T Consensus       221 ~~~divk  227 (228)
T d1k1aa_         221 RVIDILR  227 (228)
T ss_dssp             HHHHHHT
T ss_pred             CCccccC
Confidence            9999885

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=256.01  Aligned_cols=201  Identities=24%  Similarity=0.269  Sum_probs=170.6

Q ss_pred             CCccHHHHHHHcCcHHHHH----HHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHH
Q 012618           45 GKQSALHLAAAYGQIEVLS----MLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCL  120 (460)
Q Consensus        45 ~g~t~Lh~A~~~g~~~iv~----~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L  120 (460)
                      +|.||||+|+..|+.+++.    ++...   ++++|.+|.+|+||||+|+..|+.+++++|++.|+++ +..+..|.|||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~---~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l   76 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD---LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPL   76 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC--------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC---CCCcccCCCCCCccccccccccccccccccccccccc-ccccccccccc
Confidence            5889999999999865544    44455   8889999999999999999999999999999999988 77888999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCCh
Q 012618          121 HYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGST  200 (460)
Q Consensus       121 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~T  200 (460)
                      ++|+..++.++++.|++.+......      ...+.....|.||||+|+..++.+++++|++.|+.++.   ..+.+|.|
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~---~~~~~G~T  147 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLH------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA---QEPCNGRT  147 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSS------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTC---CCTTTCCC
T ss_pred             ccccccccccccchhhhhccccccc------ccccccccccchhhhHHhhcCChhheeeecccCccccc---ccccCCCC
Confidence            9999999999999999877653221      12455667789999999999999999999999984432   23467999


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCC
Q 012618          201 PLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPL  258 (460)
Q Consensus       201 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~  258 (460)
                      |||+|++.|+.+++++|+++|+|++.+|..|+||||+|+..++.+++++|++.+.+..
T Consensus       148 ~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~  205 (221)
T d1iknd_         148 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  205 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             ccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccc
Confidence            9999999999999999999999999999999999999999999999999998877543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.98  E-value=3.1e-32  Score=258.61  Aligned_cols=238  Identities=21%  Similarity=0.221  Sum_probs=201.3

Q ss_pred             HHcCCHHHHHHHHHcCCCcccccC-------CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHH
Q 012618           19 VENGDLQMIEAMVEADPTVLGMTS-------GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAM   91 (460)
Q Consensus        19 a~~g~~~~vk~Ll~~~~~~~~~~~-------~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~   91 (460)
                      ++....+.++.++....+......       .+++.|+||.|+..|++++|++||++   |+++|..|.+|.||||+|+.
T Consensus         6 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~---Gadvn~~d~~G~T~L~~A~~   82 (291)
T d1s70b_           6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER---GADINYANVDGLTALHQACI   82 (291)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH---CCCTTCBCTTCCBHHHHHHH
T ss_pred             HhHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHC---CCCCCccCCCCCcHHHHHHh
Confidence            344456777777776655432221       23456999999999999999999999   99999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHc
Q 012618           92 NGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQ  171 (460)
Q Consensus        92 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~  171 (460)
                      .|+.++|++|+++|.+. ...+..+.|||++|+..++.++++.|++.+..            .+..|..+.+++++|+..
T Consensus        83 ~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~a~~~  149 (291)
T d1s70b_          83 DDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAH------------VGAVNSEGDTPLDIAEEE  149 (291)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHCCSH
T ss_pred             cCCceeeeeeccccccc-ccccccccccccccccccccchhhcccccCcc------------cccccccCcccccccccc
Confidence            99999999999999987 66677899999999999999999999999877            688899999999999999


Q ss_pred             CCHHHHHHHHHcCC-c----------------------cccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 012618          172 GWSECVHTLLDNGA-L----------------------ACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPD  228 (460)
Q Consensus       172 g~~~~v~~Ll~~ga-~----------------------~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d  228 (460)
                      +..+.++.++.... +                      ........+..|.||||+|+..|+.+++++|+++|+|++.+|
T Consensus       150 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~  229 (291)
T d1s70b_         150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD  229 (291)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC
T ss_pred             ccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccc
Confidence            99999998886432 1                      112234556789999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHH
Q 012618          229 AFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKAL  282 (460)
Q Consensus       229 ~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~  282 (460)
                      ..|+||||+|+..|+.+++++|+++|+++...          +..|+|+|+.|.
T Consensus       230 ~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~----------d~~G~TaL~~A~  273 (291)
T d1s70b_         230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAV----------NKVGQTAFDVAD  273 (291)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------CTTSCCTTTSCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc----------CCCCCCHHHHHH
Confidence            99999999999999999999999999977653          344555666554

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.98  E-value=1e-31  Score=242.29  Aligned_cols=207  Identities=29%  Similarity=0.352  Sum_probs=191.0

Q ss_pred             HHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 012618           24 LQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIE  103 (460)
Q Consensus        24 ~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  103 (460)
                      .|+|++||++|++++... +.+|.||||+||.+|+.+++++|++.   +++++..+..+.++++.++..++.........
T Consensus         2 ~~~v~~Ll~~g~din~~~-d~~G~t~L~~A~~~g~~e~v~~Ll~~---g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATM-DKTGETSLHLAARFARADAAKRLLDA---GADANSQDNTGRTPLHAAVAADAMGVFQILLR   77 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCcCcCc-CCCCCCHHHHHHHcCCHHHHHHHHhh---cccccccccccccccccccccccccccccccc
Confidence            589999999999986432 45799999999999999999999999   99999999999999999999999998888887


Q ss_pred             cCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q 012618          104 SGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDN  183 (460)
Q Consensus       104 ~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  183 (460)
                      ............+.++.+.+.......+.+.|...+.+            ++.++..|.|||++++..+..++++.|++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~------------~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~  145 (209)
T d1ot8a_          78 NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD------------INAADNSGKTALHWAAAVNNTEAVNILLMH  145 (209)
T ss_dssp             CTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCC------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhccc------------ccccCCCCCCcchhhcccCcceeeeeeccc
Confidence            77666566667899999999999999999999998887            788999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhh
Q 012618          184 GALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALL  250 (460)
Q Consensus       184 ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~L  250 (460)
                      ++    ..+..|..|.||||+|+..|+.++|++||++|+|++.+|..|+||||+|+++|+.+++++|
T Consensus       146 ~~----~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         146 HA----NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TC----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cc----cccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            98    5566788999999999999999999999999999999999999999999999999999987

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.6e-32  Score=246.72  Aligned_cols=220  Identities=25%  Similarity=0.232  Sum_probs=191.7

Q ss_pred             ccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCcc--ccCCCCCCChHHHHHH
Q 012618           47 QSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFI--LNFDSLQGRTCLHYAA  124 (460)
Q Consensus        47 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~~g~t~L~~A~  124 (460)
                      +||||+||..|+.++|+.||+..  +.+++.+|.+|+||||+|+..|+.+++++|+++|+++  ....+..|.+|+|+++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~--~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK--PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC--GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC--CCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccc
Confidence            48999999999999999999863  5788999999999999999999999999999999876  3456778999999999


Q ss_pred             HcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHH
Q 012618          125 YYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHF  204 (460)
Q Consensus       125 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~  204 (460)
                      ..+..++++.++..+....          ....+..+.|+|+.++..++.+++++|++.|.    .....+..|+||||+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~g~t~l~~  144 (229)
T d1ixva_          79 SVGNLEVVKSLYDRPLKPD----------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGA----SVRIKDKFNQIPLHR  144 (229)
T ss_dssp             HHTCHHHHHHHHSSSSCCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCCHHHH
T ss_pred             ccccccccccccccccccc----------ccccccccccccccccccchhhhhhhhhhhcc----cccccCCCCCCccch
Confidence            9999999999998876532          45677889999999999999999999999998    556678899999999


Q ss_pred             HHhcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhChHHHHHhhCC-CCCCCCcccccccccCCCCHHHHHHHHHHH
Q 012618          205 AARGGSLECIRELLAWG-ADRVQPDAFGRIPYAIALKYKHQACAALLNP-SSAEPLVWPLQLRNMTDLNPEAKELLEKAL  282 (460)
Q Consensus       205 A~~~g~~~~v~~Ll~~g-ad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~  282 (460)
                      |+..|+.+++++|+++| .+++.+|..|+||||+|+.+++.+++++|++ .|+++..          .+..|+++|+.|+
T Consensus       145 a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~----------~d~~g~t~l~~A~  214 (229)
T d1ixva_         145 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL----------VDNKGAKAEDVAL  214 (229)
T ss_dssp             HHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC----------CCTTSCCTGGGCS
T ss_pred             hhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCC----------cCCCCCCHHHHHh
Confidence            99999999999999997 6889999999999999999999999999996 5886654          4556677787776


Q ss_pred             hhhhHHHHHHhhh
Q 012618          283 MESNEEREKAILN  295 (460)
Q Consensus       283 ~~~~~~~~~~ll~  295 (460)
                      .   .+..+.+++
T Consensus       215 ~---~~~~~~Ll~  224 (229)
T d1ixva_         215 N---EQVKKFFLN  224 (229)
T ss_dssp             C---HHHHHHHHH
T ss_pred             h---HHHHHHHHH
Confidence            3   345566664

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=8.5e-31  Score=246.33  Aligned_cols=191  Identities=22%  Similarity=0.295  Sum_probs=165.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHH--------HHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC
Q 012618            9 ERSESALFVAVENGDLQMIEAM--------VEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR   80 (460)
Q Consensus         9 ~~g~t~L~~Aa~~g~~~~vk~L--------l~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   80 (460)
                      ..|.||||+||..|+.++|+.|        ++.|++++..  +.+|+||||+|+.+|+.++|++||++   |++++.++.
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~--d~~G~TpLh~A~~~g~~~iv~~Ll~~---Gad~n~~~~  105 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKA---GADPTIYNK  105 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHT---TCCSCCCCT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcccc--CCCCCeeecccccccccccccccccc---ccccccccc
Confidence            3599999999999999999887        4568888643  57899999999999999999999999   999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCc----------------------------------------------cccCCCC
Q 012618           81 YKQTPLMVAAMNGKLSCVKKLIESGAF----------------------------------------------ILNFDSL  114 (460)
Q Consensus        81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~----------------------------------------------~~~~~~~  114 (460)
                      .|.|||++|+..++.+++++++..+..                                              .....+.
T Consensus       106 ~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (277)
T d2fo1e1         106 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY  185 (277)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSC
T ss_pred             cccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccccccc
Confidence            999999999999999888877543210                                              0223446


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCC
Q 012618          115 QGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGN  194 (460)
Q Consensus       115 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  194 (460)
                      .|+||||+++..++.+++++++......           ++.+|..|.||||+|+..|+.++|++|+++|+    +++.+
T Consensus       186 ~g~t~L~~~~~~~~~~~~~~~l~~~~~~-----------~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~ga----din~~  250 (277)
T d2fo1e1         186 KGRTALHYAAQVSNMPIVKYLVGEKGSN-----------KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA----SVEAV  250 (277)
T ss_dssp             CCCCTHHHHHSSCCHHHHHHHHHHSCCC-----------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----CSSCC
T ss_pred             CCCCcccccccccccccccccccccccc-----------ccccCCCCCCHHHHHHHcCCHHHHHHHHHCcC----CCCCc
Confidence            7899999999999999999877654432           78899999999999999999999999999999    55677


Q ss_pred             CCCCChHHHHHHhcCCHHHHHHHHH
Q 012618          195 GYPGSTPLHFAARGGSLECIRELLA  219 (460)
Q Consensus       195 d~~g~TpLh~A~~~g~~~~v~~Ll~  219 (460)
                      |..|.||||+|++.|+.++|++|++
T Consensus       251 d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         251 DATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            8899999999999999999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.4e-31  Score=239.02  Aligned_cols=193  Identities=25%  Similarity=0.275  Sum_probs=166.9

Q ss_pred             CCCcHHHHHHHcCCHHH----HHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcH
Q 012618           10 RSESALFVAVENGDLQM----IEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTP   85 (460)
Q Consensus        10 ~g~t~L~~Aa~~g~~~~----vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tp   85 (460)
                      +|.||||+|+..|+.++    ++++...+.+++.  .+.+|+||||+|+..|+.+++++|++.   |++++..|..|.||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~--~d~~g~TpLh~A~~~~~~~iv~~L~~~---g~d~~~~d~~g~t~   75 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF--QNNLQQTPLHLAVITNQPEIAEALLGA---GCDPELRDFRGNTP   75 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCC--CCTTCCCHHHHHHHTTCHHHHHCCCSC---CCCSCCCCTTCCCH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCccc--CCCCCCccccccccccccccccccccc---cccccccccccccc
Confidence            58999999999999654    4555567777754  356899999999999999999999999   99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCcc-----ccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccC-CC
Q 012618           86 LMVAAMNGKLSCVKKLIESGAFI-----LNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIR-DE  159 (460)
Q Consensus        86 L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~-d~  159 (460)
                      ||+|+..++.++++.|+..+...     .......|.||||+|+..++.+++++|+..+..            ++.. +.
T Consensus        76 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~------------~~~~~~~  143 (221)
T d1iknd_          76 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD------------VNAQEPC  143 (221)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC------------TTCCCTT
T ss_pred             cccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcc------------ccccccc
Confidence            99999999999999999986542     334456789999999999999999999999887            4544 46


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCC
Q 012618          160 SGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGAD  223 (460)
Q Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad  223 (460)
                      +|.||||+|+..|+.+++++|+++|+    +++.+|..|+||||+|+..++.+++++|++.+.+
T Consensus       144 ~G~T~L~~A~~~g~~~~v~~Ll~~ga----d~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         144 NGRTALHLAVDLQNPDLVSLLLKCGA----DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTC----CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CCCCccccccccccHHHHHHHHhcCC----cccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            79999999999999999999999999    5677788999999999999999999999998765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.6e-29  Score=223.62  Aligned_cols=224  Identities=26%  Similarity=0.256  Sum_probs=193.8

Q ss_pred             CCccHHHHHHHcCcHHHHHHHHhcc-CCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHH
Q 012618           45 GKQSALHLAAAYGQIEVLSMLLDQF-FLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYA  123 (460)
Q Consensus        45 ~g~t~Lh~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  123 (460)
                      +|+||||+|+.+|+.++|++|++.. ..|+++|.+|.+|+||||+|+..|+.+++++|++.|++. +.....+.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccc-cccccccccccccc
Confidence            6899999999999999999988521 128999999999999999999999999999999999987 66778899999999


Q ss_pred             HHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHH
Q 012618          124 AYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLH  203 (460)
Q Consensus       124 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh  203 (460)
                      ...++.++++.+.........        ..+.......++|+.+.........+.|.....+.   .......+.+||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~l~  149 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTL--------DLEARNYDGLTALHVAVNTECQETVQLLLERGADI---DAVDIKSGRSPLI  149 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSC--------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTTCCCHHH
T ss_pred             cccccccchhhhhhccccccc--------cccccccccccccccccccccchhhhhhhcccccc---ccccccchhhHHH
Confidence            999999999988877544221        14566778899999999999999999999887743   2334567899999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccccCCCCHHHHHHHHHHHh
Q 012618          204 FAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRNMTDLNPEAKELLEKALM  283 (460)
Q Consensus       204 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~  283 (460)
                      .|+..+...+++.++++|.+++.+|..|.||||+|+..|+.+++++|+++|+++..          .+.+|+|+|+.|+.
T Consensus       150 ~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~----------~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         150 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL----------KNCHNDTPLMVARS  219 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC----------CCTTSCCTTTTCSS
T ss_pred             HHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----------CCCCCCCHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999997654          45677888888887


Q ss_pred             hhhHHHH
Q 012618          284 ESNEERE  290 (460)
Q Consensus       284 ~~~~~~~  290 (460)
                      .++.+.+
T Consensus       220 ~~~~div  226 (228)
T d1k1aa_         220 RRVIDIL  226 (228)
T ss_dssp             HHHHHHH
T ss_pred             CCCcccc
Confidence            7766554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.4e-28  Score=226.60  Aligned_cols=235  Identities=22%  Similarity=0.185  Sum_probs=182.5

Q ss_pred             CccHHHHHHHcCcHHHHHHHHhccCCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHH
Q 012618           46 KQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALN-RYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAA  124 (460)
Q Consensus        46 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~  124 (460)
                      +.|+||.|+++|++++|++||++   |+++|.++ ..|.||||+|+..|+.+++++|++.+... ...+..+.+|.++|.
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~---G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-~~~~~~~~~~~~~~~   80 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEG---GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHC---CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc-cccccccchhhHHHh
Confidence            46999999999999999999999   99999765 46999999999999999999999998865 333334445555555


Q ss_pred             HcCCHHHHHHHHHhcCCCCCccc-------------------------------CCCccccccCCCCCCCHHHHHHHcCC
Q 012618          125 YYGHSDCLQALLTAARTSPVANT-------------------------------WGFSRFVNIRDESGATPLHLAARQGW  173 (460)
Q Consensus       125 ~~g~~~iv~~Ll~~~~~~~~~~~-------------------------------~~~~~~v~~~d~~g~t~L~~A~~~g~  173 (460)
                      ..+..+...++++..........                               ..........+..|.||||+|+..|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T d1wdya_          81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             hcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCC
Confidence            55555444444444322211111                               11112234566789999999999999


Q ss_pred             HHHHHHHHHc-CCccccCCCCCCCCCChHHHHHHh----cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHH
Q 012618          174 SECVHTLLDN-GALACSSTGGNGYPGSTPLHFAAR----GGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAA  248 (460)
Q Consensus       174 ~~~v~~Ll~~-ga~~~~~~~~~d~~g~TpLh~A~~----~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~  248 (460)
                      .+++++|+++ |+    +++..+..|.++++.+..    .+..+++++|+++|++++.+|..|.||||+|++.++.++++
T Consensus       161 ~~~~~~Ll~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~  236 (285)
T d1wdya_         161 VEVLKILLDEMGA----DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ  236 (285)
T ss_dssp             HHHHHHHHHTSCC----CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhccCC----CcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHH
Confidence            9999999976 66    556667788887776543    33467999999999999999999999999999999999999


Q ss_pred             hhCC-CCCCCCcccccccccCCCCHHHHHHHHHHHhhhhHHHHHHhhhccc
Q 012618          249 LLNP-SSAEPLVWPLQLRNMTDLNPEAKELLEKALMESNEEREKAILNETI  298 (460)
Q Consensus       249 ~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~~~  298 (460)
                      +|++ .|+++          ...+.+|.|+|+.|+..++.+.++.|++...
T Consensus       237 ~lL~~~g~di----------n~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GA  277 (285)
T d1wdya_         237 RLLEQEHIEI----------NDTDSDGKTALLLAVELKLKKIAELLCKRGA  277 (285)
T ss_dssp             HHHHSSSCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred             HHHHcCCCCC----------cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            9986 57754          3467788999999999999999999987643

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.7e-28  Score=206.94  Aligned_cols=154  Identities=34%  Similarity=0.429  Sum_probs=120.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG  127 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  127 (460)
                      +|||+|+..|+.++|++|+++   |++++.+|.+|.||||+|+ .|+.+++++|++.|+++ +..+..+.++|+.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~---g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN---NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS---CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHC---CCCcCccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccc
Confidence            678888888888888888887   8888888888888888765 67888888888888876 666677788888888888


Q ss_pred             CHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHh
Q 012618          128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAAR  207 (460)
Q Consensus       128 ~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~  207 (460)
                      +.+.++.|++.+..            ++..+..|.+|||+|+..++.+++++|+++++   .+.+.+|..|.||||+|++
T Consensus        78 ~~~~~~~l~~~~~~------------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~---~~~~~~d~~g~TpL~~A~~  142 (156)
T d1ihba_          78 FLDTLQTLLEFQAD------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA---SNVGHRNHKGDTACDLARL  142 (156)
T ss_dssp             CHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC---CCTTCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccc------------cccccccccccccccccccccccccccccccc---ccccccCCCCCCHHHHHHH
Confidence            88888888877766            67777788888888888888888888887776   2345566777888888888


Q ss_pred             cCCHHHHHHHHHcC
Q 012618          208 GGSLECIRELLAWG  221 (460)
Q Consensus       208 ~g~~~~v~~Ll~~g  221 (460)
                      .++.++|++|+++|
T Consensus       143 ~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         143 YGRNEVVSLMQANG  156 (156)
T ss_dssp             TTCHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHhcC
Confidence            88888888888776

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=5.7e-30  Score=249.61  Aligned_cols=234  Identities=19%  Similarity=0.086  Sum_probs=170.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHH---HHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCC--CCC
Q 012618            8 RERSESALFVAVENGDLQMIEA---MVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALN--RYK   82 (460)
Q Consensus         8 ~~~g~t~L~~Aa~~g~~~~vk~---Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~--~~g   82 (460)
                      +..|.|+|++|+++|+.+++++   |++.|++++..  +.+|.||||+|+.+|+.++|++|++.   |++++..+  .+|
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~--~~~g~taL~~Aa~~G~~~~v~~Ll~~---g~~~~~~~~~~~g  161 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI--QAENYQAFRLAAENGHLHVLNRLCEL---APTEIMAMIQAEN  161 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC----CHHHHHHHHHHHHTTCHHHHHHHHHS---CTTTHHHHHSHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc--CCCCCCHHHHHHHCCCHHHHHHHHHc---CCCccccccccCC
Confidence            4478899999999999887766   78899888654  45789999999999999999999999   99988765  458


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCccc--cCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC
Q 012618           83 QTPLMVAAMNGKLSCVKKLIESGAFIL--NFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES  160 (460)
Q Consensus        83 ~tpL~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~  160 (460)
                      +||||+|+.+|+.++|++|++.|++..  +..+..+.|||+.|+..|+.+++++|++.+++.......     .......
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~-----~~~~~~~  236 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH-----EFEYGEK  236 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHC-----TTTTTTT
T ss_pred             CChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHH-----HHHcCcH
Confidence            999999999999999999999997642  333445778888899999999999999988652110000     0112233


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCC-------CCCChHHHHHHhcCCHHHHHHHHHcCCC-----CCCCC
Q 012618          161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNG-------YPGSTPLHFAARGGSLECIRELLAWGAD-----RVQPD  228 (460)
Q Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d-------~~g~TpLh~A~~~g~~~~v~~Ll~~gad-----~~~~d  228 (460)
                      +.++++.+...+..+....|.....+..  ....+       ..+.++|+.|+..+..+++++|++.+..     .+..+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~--~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~  314 (346)
T d2ajaa1         237 YVNPFIARHVNRLKEMHDAFKLSNPDGV--FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP  314 (346)
T ss_dssp             THHHHHHHHHHHHHHHHTTTTTTSSSSC--CCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSST
T ss_pred             hhhHHHHHhhccchHHHHHHHHhccccc--HhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCC
Confidence            3455555555544444443333222111  11111       1235789999999999999999988764     34455


Q ss_pred             CCCCCHHHHHHHhChHHHHHhhCCC
Q 012618          229 AFGRIPYAIALKYKHQACAALLNPS  253 (460)
Q Consensus       229 ~~G~tpL~~A~~~~~~~i~~~Ll~~  253 (460)
                      .+|.||||+|++.|+.+++++|++.
T Consensus       315 ~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         315 GDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             TCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             CCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            6799999999999999999999864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-27  Score=205.17  Aligned_cols=153  Identities=25%  Similarity=0.384  Sum_probs=144.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCC
Q 012618           84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT  163 (460)
Q Consensus        84 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t  163 (460)
                      +|||+||..|+.++|++|+++|+++ +..|..|.||||+|+ .|+.+++++|++.+++            ++.++..+.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~------------~~~~~~~~~~   68 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLRGAN------------PDLKDRTGFA   68 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC------------TTCCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-cccccccccccccccc------------cccccccCcc
Confidence            8999999999999999999999998 888899999999886 7899999999999988            7899999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHhC
Q 012618          164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGA-DRVQPDAFGRIPYAIALKYK  242 (460)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d~~G~tpL~~A~~~~  242 (460)
                      +|+.++..+..+++++|++.+.    ..+..+..|.+|||+|+..++.+++++|+++|+ +++.+|..|+||||+|+..+
T Consensus        69 ~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~  144 (156)
T d1ihba_          69 VIHDAARAGFLDTLQTLLEFQA----DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG  144 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcC
Confidence            9999999999999999999998    566778899999999999999999999999986 89999999999999999999


Q ss_pred             hHHHHHhhCCCC
Q 012618          243 HQACAALLNPSS  254 (460)
Q Consensus       243 ~~~i~~~Ll~~g  254 (460)
                      +.+++++|+++|
T Consensus       145 ~~~iv~~Ll~~G  156 (156)
T d1ihba_         145 RNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             CHHHHHHHHhcC
Confidence            999999999876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=6.2e-27  Score=210.59  Aligned_cols=194  Identities=27%  Similarity=0.306  Sum_probs=171.0

Q ss_pred             Cccc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCC
Q 012618            3 QRMS--CRERSESALFVAVENGDLQMIEAMVEADPTVLGMTSGYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNR   80 (460)
Q Consensus         3 ~~~~--~~~~g~t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~   80 (460)
                      .+++  ++..|.||||+||+.|+.++|++|++.|++++..  +..+.++++.++..++...........  .........
T Consensus        13 ~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   88 (209)
T d1ot8a_          13 AELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQ--DNTGRTPLHAAVAADAMGVFQILLRNR--ATNLNARMH   88 (209)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHTCT--TCCTTCCCT
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccc--ccccccccccccccccccccccccccc--ccccccccc
Confidence            3444  3678999999999999999999999999998554  457789999999999988877777652  333344556


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCC
Q 012618           81 YKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDES  160 (460)
Q Consensus        81 ~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~  160 (460)
                      .|.++.+.+.........+.|+..++++ +..+..|+|||++|+..+..++++.|++.+.+            ++..|..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~------------~~~~d~~  155 (209)
T d1ot8a_          89 DGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHAN------------RDAQDDK  155 (209)
T ss_dssp             TCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC------------TTCCCTT
T ss_pred             cccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccc------------ccccccc
Confidence            7889999999999999999999999987 67788999999999999999999999999887            7999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHH
Q 012618          161 GATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIREL  217 (460)
Q Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~L  217 (460)
                      |.||||+|+..|+.++|++||++|+    +++.+|..|+||||+|+++|+.++|++|
T Consensus       156 g~TpL~~A~~~g~~~~v~~Ll~~ga----d~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         156 DETPLFLAAREGSYEASKALLDNFA----NREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccchhccccHHHHHHHHHHCCC----CCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999    5567788999999999999999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.1e-26  Score=198.52  Aligned_cols=149  Identities=30%  Similarity=0.450  Sum_probs=117.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCC
Q 012618           84 TPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGAT  163 (460)
Q Consensus        84 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t  163 (460)
                      ||||.|++.|+.++|++||++|+++ + .+..|+||||+|+..++.++++.++.....            ....+..+.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~   69 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS------------RDARTKVDRT   69 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC------------TTCCCTTCCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCcccccccccccccccccccccccc------------cccccccccc
Confidence            7788888888888888888887765 3 466778888888888888888777776655            4555667778


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Q 012618          164 PLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKH  243 (460)
Q Consensus       164 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~  243 (460)
                      +++.++...+.+++++|+.+|+    ....++..|+||||+|+..|+.++|++|+++|+|++.+|.+|.||||+|+.+|+
T Consensus        70 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          70 PLHMAASEGHANIVEVLLKHGA----DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccceeeecccccCC----ccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCC
Confidence            8888888888888888888887    445567778888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhh
Q 012618          244 QACAALL  250 (460)
Q Consensus       244 ~~i~~~L  250 (460)
                      .+++++|
T Consensus       146 ~eiv~lL  152 (153)
T d1awcb_         146 EDLAEIL  152 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            8888876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-26  Score=199.53  Aligned_cols=152  Identities=31%  Similarity=0.415  Sum_probs=92.9

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG  127 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  127 (460)
                      +.|+.||..|+.++|++||+..  +++++..|..|+||||+|+ .++.+++++|++.+.++ +..+..|.+||++++..+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~--~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE--LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT--CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC--CCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            3466666666666666666542  5566666666666666654 35666666666666665 444556666666666666


Q ss_pred             CHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHh
Q 012618          128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAAR  207 (460)
Q Consensus       128 ~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~  207 (460)
                      +.++++++++.+.+            ++.+|..|.||||+|+..|+.+++++|+ .|+    +.+.+|..|+||||+|++
T Consensus        80 ~~~~~~~~l~~~~~------------~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~----~~~~~d~~G~TpL~~A~~  142 (156)
T d1bd8a_          80 FLDTLKVLVEHGAD------------VNVPDGTGALPIHLAVQEGHTAVVSFLA-AES----DLHRRDARGLTPLELALQ  142 (156)
T ss_dssp             CHHHHHHHHHTTCC------------SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTS----CTTCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccc------------cccccCCCCeeecccccccccccccccc-ccc----cccccCCCCCCHHHHHHH
Confidence            66666666666555            5556666666666666666666666555 444    334455556666666666


Q ss_pred             cCCHHHHHHHHHc
Q 012618          208 GGSLECIRELLAW  220 (460)
Q Consensus       208 ~g~~~~v~~Ll~~  220 (460)
                      .|+.+++++|++|
T Consensus       143 ~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         143 RGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHHTT
T ss_pred             cCCHHHHHHHHhh
Confidence            6666666666554

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=198.79  Aligned_cols=149  Identities=27%  Similarity=0.389  Sum_probs=69.7

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHH
Q 012618           86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPL  165 (460)
Q Consensus        86 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L  165 (460)
                      |+.||..|+.++|+.|++.+...++..|..|+||||+|+ .|+.+++++|++.+.+            ++..+..|.+||
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~------------~~~~~~~~~~~l   72 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS------------PNVQDTSGTSPV   72 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC------------TTCCCTTSCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccc------------cccccccccccc
Confidence            444555555555554444322112444444455554443 2444444555444443            344444444555


Q ss_pred             HHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHH
Q 012618          166 HLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQA  245 (460)
Q Consensus       166 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~  245 (460)
                      ++++..++.+++++++++|+    +.+.+|..|.||||+|++.|+.+++++|+ .|++++.+|.+|+||||+|+.+|+.+
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~----~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          73 HDAARTGFLDTLKVLVEHGA----DVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTTC----CSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHH
T ss_pred             cccccccccccccccccccc----ccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHH
Confidence            55555555555555555444    22333444445555555555555554443 34444444555555555555555555


Q ss_pred             HHHhhCC
Q 012618          246 CAALLNP  252 (460)
Q Consensus       246 i~~~Ll~  252 (460)
                      ++++|++
T Consensus       148 iv~~Ll~  154 (156)
T d1bd8a_         148 LVDILQG  154 (156)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            5554443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.4e-26  Score=195.49  Aligned_cols=149  Identities=26%  Similarity=0.301  Sum_probs=94.5

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG  127 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  127 (460)
                      ||||.|++.|+.++|++||++   |++++ .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~---ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMAN---GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHH---TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHc---CCCcc-cccCCCccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            666666666666666666666   55554 4566666666666666666666666655544 333445566666666666


Q ss_pred             CHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHHh
Q 012618          128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAAR  207 (460)
Q Consensus       128 ~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~~  207 (460)
                      +.+++++++..+.+            .+.+|..|.||||+|+..|+.+++++|++.|+    +++..|..|.||||+|+.
T Consensus        79 ~~~~~~~l~~~~~~------------~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~ga----d~~~~d~~g~Tpl~~A~~  142 (153)
T d1awcb_          79 HANIVEVLLKHGAD------------VNAKDMLKMTALHWATEHNHQEVVELLIKYGA----DVHTQSKFCKTAFDISID  142 (153)
T ss_dssp             CHHHHHHHHTTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHH
T ss_pred             cceeeecccccCCc------------cccccccCchHHHhhhhcchhheeeecccccc----CCcccCCCCCCHHHHHHH
Confidence            66666666666655            45566666666666666666666666666666    344455666666666666


Q ss_pred             cCCHHHHHHH
Q 012618          208 GGSLECIREL  217 (460)
Q Consensus       208 ~g~~~~v~~L  217 (460)
                      +|+.+++++|
T Consensus       143 ~g~~eiv~lL  152 (153)
T d1awcb_         143 NGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHhC
Confidence            6666666654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=3.5e-28  Score=236.83  Aligned_cols=237  Identities=18%  Similarity=0.070  Sum_probs=173.7

Q ss_pred             CCCCccHHHHHHHcCcHHHHHH---HHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccC-CCCCCCh
Q 012618           43 GYGKQSALHLAAAYGQIEVLSM---LLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNF-DSLQGRT  118 (460)
Q Consensus        43 ~~~g~t~Lh~A~~~g~~~iv~~---Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~t  118 (460)
                      +..|.||||+|+.+|+.+++++   |++.   ++++|.+|.+|+||||+|+.+|+.++|++|++.|+++... .+..|+|
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~---~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTS---DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH  163 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--C---CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhC---CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCC
Confidence            4578999999999999888776   6777   9999999999999999999999999999999999987332 1246899


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccC---CCCCC
Q 012618          119 CLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSS---TGGNG  195 (460)
Q Consensus       119 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~---~~~~d  195 (460)
                      |||+|+..|+.++|++|++.++...         ..+..+..+.||++.|+.+|+.++|++|++.|++++..   ....+
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~---------~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~  234 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEA---------TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYG  234 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGH---------HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTT
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCccc---------ccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcC
Confidence            9999999999999999999886521         13445566788899999999999999999999854321   11122


Q ss_pred             CCCChHHHHHHhcCCHHHHHHHHHcCCC--CCCCCC-------CCCCHHHHHHHhChHHHHHhhCCCCCCCCcccccccc
Q 012618          196 YPGSTPLHFAARGGSLECIRELLAWGAD--RVQPDA-------FGRIPYAIALKYKHQACAALLNPSSAEPLVWPLQLRN  266 (460)
Q Consensus       196 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~-------~G~tpL~~A~~~~~~~i~~~Ll~~ga~~~~~~~~~~~  266 (460)
                      ..+.++++.+...+..+....|.....+  .+..+.       .+.++++.|...++.+++++|++.++.....     .
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~-----~  309 (346)
T d2ajaa1         235 EKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA-----P  309 (346)
T ss_dssp             TTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGS-----S
T ss_pred             cHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhc-----c
Confidence            3344566665555555544444333222  222222       2347788898999999999999987643221     2


Q ss_pred             cCCCCHHHHHHHHHHHhhhhHHHHHHhhhc
Q 012618          267 MTDLNPEAKELLEKALMESNEEREKAILNE  296 (460)
Q Consensus       267 ~~~~~~~~~~~L~~a~~~~~~~~~~~ll~~  296 (460)
                      ....+.+++|+|+.|+..++.+.++.+++-
T Consensus       310 ~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         310 TATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             CCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             cccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            223344678999999999999999999864

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.7e-25  Score=213.45  Aligned_cols=152  Identities=22%  Similarity=0.245  Sum_probs=115.6

Q ss_pred             CCCCccC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCH-------HHHHHHHHhcCCCC
Q 012618           72 YTNTDAL-NRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHS-------DCLQALLTAARTSP  143 (460)
Q Consensus        72 ~~~~~~~-~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~-------~iv~~Ll~~~~~~~  143 (460)
                      +.++|.. |.+|+||||+|+..|+.++|++|+++|+++ +..|..|+||||+|+..++.       +++++|...     
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~-----  169 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC-----  169 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG-----
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhh-----
Confidence            6677754 788888888888888888888888888887 67778888888888876652       334443321     


Q ss_pred             CcccCCCccccccCCCCCCCHHHHHHHcCC----HH--------HHHHHHHcCCcc------------------------
Q 012618          144 VANTWGFSRFVNIRDESGATPLHLAARQGW----SE--------CVHTLLDNGALA------------------------  187 (460)
Q Consensus       144 ~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~----~~--------~v~~Ll~~ga~~------------------------  187 (460)
                                ++.+|..|+||||+++..+.    ..        ++.+++..+...                        
T Consensus       170 ----------~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (301)
T d1sw6a_         170 ----------LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL  239 (301)
T ss_dssp             ----------GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHH
T ss_pred             ----------hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHH
Confidence                      56678888888888876443    22        333444443311                        


Q ss_pred             ---------ccCCCCCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 012618          188 ---------CSSTGGNGYPGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIAL  239 (460)
Q Consensus       188 ---------~~~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~  239 (460)
                               ...++.+|..|+||||+|++.|+.++|++|+++|||++.+|..|+|||++|+
T Consensus       240 ~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         240 ENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence                     1125678899999999999999999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-24  Score=177.71  Aligned_cols=121  Identities=29%  Similarity=0.343  Sum_probs=110.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCC
Q 012618          116 GRTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNG  195 (460)
Q Consensus       116 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d  195 (460)
                      +.++||+|+..|+.++|++|++.|++            +|.+|..|.||||+|+ .|+.+++++|+++|++    .+..+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad------------~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~----~~~~~   65 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE----PNCAD   65 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC------------TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC----CCCCC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc------------cccccccccccccccc-cccccccccccccccc----ccccc
Confidence            56899999999999999999999988            8999999999999775 7999999999999994    45555


Q ss_pred             CCCC-hHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhCCC
Q 012618          196 YPGS-TPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLNPS  253 (460)
Q Consensus       196 ~~g~-TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll~~  253 (460)
                      ..+. ||||+|++.|+.+++++|+++|++++.+|..|+||||+|+++|+.+++++|+..
T Consensus        66 ~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          66 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            5554 799999999999999999999999999999999999999999999999999863

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=9.2e-25  Score=178.40  Aligned_cols=115  Identities=27%  Similarity=0.296  Sum_probs=105.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCC
Q 012618          117 RTCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGY  196 (460)
Q Consensus       117 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~  196 (460)
                      .|||++|+..|+.++|++|++.|++            ++.+|..|.||||+|+..|+.+++++|+++|+    +.+.+|.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d------------~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~----din~~d~   66 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED------------VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA----DINAPDK   66 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC------------CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC----TTTCCSS
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc------------cccccccccccccccccccccccccccccccc----eeeeccc
Confidence            4899999999999999999999988            89999999999999999999999999999999    5567788


Q ss_pred             CCChHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHhhC
Q 012618          197 PGSTPLHFAARGGSLECIRELLAWGADRVQPDAFGRIPYAIALKYKHQACAALLN  251 (460)
Q Consensus       197 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~tpL~~A~~~~~~~i~~~Ll  251 (460)
                      .|+||||+|+.+|+.++|++|+++|+|++.+|..|+||||+|..    +.++.|+
T Consensus        67 ~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~----~~i~~LL  117 (118)
T d1myoa_          67 HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN----QAIKALL  117 (118)
T ss_dssp             SCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCSS----TTTGGGG
T ss_pred             ccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHhH----HHHHHhc
Confidence            99999999999999999999999999999999999999999832    3455554

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.6e-24  Score=176.71  Aligned_cols=117  Identities=30%  Similarity=0.347  Sum_probs=65.2

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCC-ChHHHHHHHc
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQG-RTCLHYAAYY  126 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g-~t~L~~A~~~  126 (460)
                      ++||+|+.+|++++|++||++   |+++|.++..|.||||+|+ .|+.+++++|+++|+++ +..+..+ .||||+|+..
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~---gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEA---GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTT---TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHc---CCccccccccccccccccc-ccccccccccccccccc-cccccccccccccccccc
Confidence            455555555555555555555   5555555555555555443 45555555555555555 3333333 2455555555


Q ss_pred             CCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 012618          127 GHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLL  181 (460)
Q Consensus       127 g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll  181 (460)
                      |+.+++++|++.|++            ++.+|..|+||||+|+..|+.+++++|+
T Consensus        80 g~~~~v~~Ll~~ga~------------~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          80 GFLDTLVVLHRAGAR------------LDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             TCHHHHHHHHHHTCC------------SSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             ccccccccccccccc------------cccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            555555555555555            5555555555555555555555555554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.1e-23  Score=200.70  Aligned_cols=153  Identities=22%  Similarity=0.211  Sum_probs=100.1

Q ss_pred             CCCCccHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCH-------HHHHHHHHcCCccccCCCCC
Q 012618           43 GYGKQSALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKL-------SCVKKLIESGAFILNFDSLQ  115 (460)
Q Consensus        43 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~-------~~v~~Ll~~g~~~~~~~~~~  115 (460)
                      |.+|+||||+|+..|+.++|++||++   |++++.+|..|+||||.|+..++.       +++++|..    .....|..
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~----~~~~~d~~  176 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKH---GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP----CLILEDSM  176 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG----GGGEECTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh----hhhhcccc
Confidence            35566777777777777777777776   677777777777777777765431       33333322    12444556


Q ss_pred             CChHHHHHHHcCC------------HHHHHHHHHhcCCCCCcccC-------------------------CCccccccCC
Q 012618          116 GRTCLHYAAYYGH------------SDCLQALLTAARTSPVANTW-------------------------GFSRFVNIRD  158 (460)
Q Consensus       116 g~t~L~~A~~~g~------------~~iv~~Ll~~~~~~~~~~~~-------------------------~~~~~v~~~d  158 (460)
                      |+||||+++..+.            ..++.+++..+.........                         .....+|.+|
T Consensus       177 g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D  256 (301)
T d1sw6a_         177 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD  256 (301)
T ss_dssp             CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCC
T ss_pred             cCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCC
Confidence            6777776664433            12334444444332111000                         0112278999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCCCChHHHHHH
Q 012618          159 ESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYPGSTPLHFAA  206 (460)
Q Consensus       159 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~g~TpLh~A~  206 (460)
                      ..|+||||+|++.|+.++|++|+++|+    +++..|..|.|||++|+
T Consensus       257 ~~G~TpLh~A~~~g~~~iv~~Ll~~GA----d~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         257 SNGDTCLNIAARLGNISIVDALLDYGA----DPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHHTTC----CTTCCCTTSCCGGGGTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999999    66778889999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.5e-24  Score=175.74  Aligned_cols=105  Identities=24%  Similarity=0.296  Sum_probs=59.4

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG  127 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  127 (460)
                      |||++|+++|+.++|++|+++   |++++.++..|+||||+|+..|+.+++++|++.|+++ +..+..|+||||+|+..|
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~---g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAK---GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTT---TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTT
T ss_pred             hHHHHHHHCCCHHHHHHHHHh---hhcccccccccccccccccccccccccccccccccee-eecccccccchhhhhhcC
Confidence            455555555555555555555   5555555555555555555555555555555555554 444455555555555555


Q ss_pred             CHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHH
Q 012618          128 HSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLA  168 (460)
Q Consensus       128 ~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A  168 (460)
                      +.+++++|++.|++            ++.+|.+|.||||+|
T Consensus        80 ~~~~v~~Ll~~Gad------------~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGAD------------KTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCC------------SSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhccccc------------ceeeCCCCCCHHHHH
Confidence            55555555555554            455555555555554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.7e-23  Score=170.61  Aligned_cols=119  Identities=22%  Similarity=0.253  Sum_probs=109.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCCC
Q 012618          118 TCLHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGALACSSTGGNGYP  197 (460)
Q Consensus       118 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~d~~  197 (460)
                      ++|+.|+..|+.++|++|++.|++            +|.+|..|+||||+|+..|+.+++++|++.|+    +.+..|.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d------------~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~----~~~~~d~~   66 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD------------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGV----NVNAADSD   66 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC----CTTCCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC------------cccccccccccccccccccccccccccccccc----cccccccc
Confidence            689999999999999999999988            89999999999999999999999999999999    56677889


Q ss_pred             CChHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHH--HHhChHHHHHhhCC
Q 012618          198 GSTPLHFAARGGSLECIRELLAWGADRVQPDA-FGRIPYAIA--LKYKHQACAALLNP  252 (460)
Q Consensus       198 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~G~tpL~~A--~~~~~~~i~~~Ll~  252 (460)
                      |+||||+|+..|+.++|++|+++|++++..+. .|+||++++  .+.|+.+++++|+.
T Consensus        67 g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          67 GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             CcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            99999999999999999999999999998775 588987766  56788999999964

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.4e-23  Score=169.29  Aligned_cols=120  Identities=20%  Similarity=0.229  Sum_probs=65.0

Q ss_pred             cHHHHHHHcCcHHHHHHHHhccCCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcC
Q 012618           48 SALHLAAAYGQIEVLSMLLDQFFLYTNTDALNRYKQTPLMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYG  127 (460)
Q Consensus        48 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g  127 (460)
                      ++|+.|+..|++++|++|+++   |+++|.+|.+|+||||+|+..|+.+++++|++.|+++ +..|.+|+||||+|+.+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~---g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE---VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST---TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHc---CCCcccccccccccccccccccccccccccccccccc-ccccccCcccccccchhh
Confidence            455555555555555555555   5555555555555555555555555555555555554 445555555555555555


Q ss_pred             CHHHHHHHHHhcCCCCCcccCCCccccccCC-CCCCCHHHHH--HHcCCHHHHHHHHHc
Q 012618          128 HSDCLQALLTAARTSPVANTWGFSRFVNIRD-ESGATPLHLA--ARQGWSECVHTLLDN  183 (460)
Q Consensus       128 ~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d-~~g~t~L~~A--~~~g~~~~v~~Ll~~  183 (460)
                      +.+++++|+++|++            ++..+ ..+.|+++++  +..|+.+++++|++.
T Consensus        79 ~~~~v~~Ll~~ga~------------v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          79 NVQVCKFLVESGAA------------VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             CHHHHHHHHHTTCC------------TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCC------------cccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            55555555555554            34333 2344544433  344555555555543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=4.3e-21  Score=163.68  Aligned_cols=126  Identities=21%  Similarity=0.254  Sum_probs=113.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCcccc----cCCCCCccHHHHHHHc---CcHHHHHHHHhccCCCCCCccCCCCCCcH
Q 012618           13 SALFVAVENGDLQMIEAMVEADPTVLGM----TSGYGKQSALHLAAAY---GQIEVLSMLLDQFFLYTNTDALNRYKQTP   85 (460)
Q Consensus        13 t~L~~Aa~~g~~~~vk~Ll~~~~~~~~~----~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~g~tp   85 (460)
                      +.|+.|++.+++..+..++..|.++...    ..+..|+||||+|+..   ++.++|++|+++   |+++|.+|..|+||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~---gadin~~d~~g~Tp   84 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN---SGNLDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH---CSCTTCCCTTCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc---CCChhhhhhhhccc
Confidence            4578999999999999999998876432    2245689999999985   678999999999   99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCccccCCCCCCChHHHHHHHcCCHHHHHHHHHhcCCC
Q 012618           86 LMVAAMNGKLSCVKKLIESGAFILNFDSLQGRTCLHYAAYYGHSDCLQALLTAARTS  142 (460)
Q Consensus        86 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~  142 (460)
                      ||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|+.+++++|++.++..
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999999998 788999999999999999999999999987653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=6.8e-21  Score=162.39  Aligned_cols=121  Identities=25%  Similarity=0.336  Sum_probs=81.8

Q ss_pred             HHHHHHHcCcHHHHHHHHhccCCCCCCccC------CCCCCcHHHHHHHc---CCHHHHHHHHHcCCccccCCCCCCChH
Q 012618           49 ALHLAAAYGQIEVLSMLLDQFFLYTNTDAL------NRYKQTPLMVAAMN---GKLSCVKKLIESGAFILNFDSLQGRTC  119 (460)
Q Consensus        49 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~------~~~g~tpL~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~t~  119 (460)
                      .|+.|++.+++..+..++..   |.+++..      +..|+||||+|+..   ++.+++++|+++|+++ +.++..|+||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~---g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~Tp   84 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYAD---GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT---TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCH
T ss_pred             HHHHHHHhCCHHHHHHHHHc---CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhccc
Confidence            45567777777777777776   6655433      45567777777753   4566777777777665 5566667777


Q ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCcccCCCccccccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q 012618          120 LHYAAYYGHSDCLQALLTAARTSPVANTWGFSRFVNIRDESGATPLHLAARQGWSECVHTLLDNGA  185 (460)
Q Consensus       120 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~v~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga  185 (460)
                      ||+|+..|+.+++++|++.|++            ++.+|..|.||||+|+..|+.+++++|++.++
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad------------~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKAS------------IEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccccCcc------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            7777777777777777776666            66666777777777777777777777766655

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.1e-11  Score=89.83  Aligned_cols=55  Identities=38%  Similarity=0.857  Sum_probs=45.7

Q ss_pred             CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEee
Q 012618          320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARI  384 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~  384 (460)
                      +...|.||++...+++.+||||.||..|+..|....          ...||+||..|.+.-.+.+
T Consensus        22 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~----------~~~CP~Cr~~i~~~~~i~i   76 (79)
T d1fbva4          22 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE----------GQGCPFCRCEIKGTEPIVV   76 (79)
T ss_dssp             CTTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTT----------CCSCTTTCCCCCCCCCSSC
T ss_pred             CCCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHC----------cCcCCCCCcCccCCceeec
Confidence            345799999999999999999999999999995422          2679999999987765544

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.05  E-value=7.5e-11  Score=84.22  Aligned_cols=49  Identities=31%  Similarity=0.785  Sum_probs=41.0

Q ss_pred             CccCcccccCCCcc-EecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618          321 VELCCICFENLCTI-EIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV  380 (460)
Q Consensus       321 ~~~C~iC~~~~~~~-~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~  380 (460)
                      .+.|.||++.+.+. +.+||||.||..|+..|...+           ..||+||.+|..+.
T Consensus         5 ~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-----------~~CP~CR~~i~~~~   54 (68)
T d1chca_           5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEE
T ss_pred             CCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC-----------CcCCCCCcchHhhc
Confidence            45699999998775 448999999999999996554           67999999987654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=6.8e-11  Score=80.41  Aligned_cols=44  Identities=25%  Similarity=0.582  Sum_probs=37.6

Q ss_pred             CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      +...|.||++...+++.+||||.||..|+..+              ...||+||++|.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~--------------~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS--------------GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS--------------SSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC--------------CCcCcCCCCccc
Confidence            45679999999999999999999999997322              367999999985

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=8.4e-10  Score=75.21  Aligned_cols=53  Identities=11%  Similarity=0.034  Sum_probs=45.5

Q ss_pred             cCcccccCCCccEecC-CCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceeeeEeecC
Q 012618          323 LCCICFENLCTIEIKP-CGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLVAARIIN  386 (460)
Q Consensus       323 ~C~iC~~~~~~~~~~~-CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~~~~~~~  386 (460)
                      .|.||++...+++..+ |||.||..|+..|...+           ..||+||++++.--.+++++
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~-----------~~CP~c~~~l~~~dLipik~   55 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLSIEEIVEIVP   55 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCCGGGCEECCC
T ss_pred             CCccCCchHHhcCccCCCCCcccHHHHHHHHhhc-----------cCCCccCCcCCHHhceeCCC
Confidence            5999999999999875 99999999999997665           67999999997766666654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.3e-09  Score=80.90  Aligned_cols=46  Identities=28%  Similarity=0.475  Sum_probs=39.5

Q ss_pred             ccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          322 ELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      ..|.||++...+++.++|||.||..|+..|....          ...||+||.++.
T Consensus        24 l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~----------~~~CP~Cr~p~~   69 (86)
T d1rmda2          24 ISCQICEHILADPVETSCKHLFCRICILRCLKVM----------GSYCPSCRYPCF   69 (86)
T ss_dssp             TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT----------CSBCTTTCCBCC
T ss_pred             cCCccCCcchhcceecCCCChhhHHHHHHHHhhC----------CCcCcccCCCCC
Confidence            4699999999999999999999999999985322          257999999874

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2e-09  Score=75.80  Aligned_cols=49  Identities=24%  Similarity=0.593  Sum_probs=37.1

Q ss_pred             CCccCcccccCC-----CccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          320 DVELCCICFENL-----CTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       320 ~~~~C~iC~~~~-----~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      +...|.||++..     ......+|||.||..|+..|..+.          ...||+||.+|.+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----------~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG----------AGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT----------SSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcC----------cCCCCCCCcCccc
Confidence            356799999752     234567999999999999995432          1469999999854

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.76  E-value=2.1e-09  Score=72.70  Aligned_cols=46  Identities=26%  Similarity=0.669  Sum_probs=35.7

Q ss_pred             CccCcccccCCCc---cEe-cCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          321 VELCCICFENLCT---IEI-KPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       321 ~~~C~iC~~~~~~---~~~-~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      ...|.||++....   +.. .+|||.||..|+..|-..+           ..||+||.+|.
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~-----------~~CP~CR~~i~   54 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-----------STCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-----------CSCSSSCCCSC
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhC-----------CcCCCCCCEeE
Confidence            3469999998754   333 4699999999999994332           67999999873

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.6e-09  Score=82.06  Aligned_cols=47  Identities=34%  Similarity=0.738  Sum_probs=39.8

Q ss_pred             cCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          323 LCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       323 ~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      .|.||++.+.+++.+||||.||..|...|..+.+        ....||+||.++.
T Consensus        23 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--------GPSQCPLCKNDIT   69 (103)
T ss_dssp             SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS--------SSCCCTTTSCCCC
T ss_pred             CCCccCchhCCeEEcCCCCchhhHHHHHHHHHCC--------CCCcCcCCCCcCC
Confidence            4999999999999999999999999999854432        2357999999874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.2e-09  Score=71.02  Aligned_cols=45  Identities=31%  Similarity=0.616  Sum_probs=34.4

Q ss_pred             cCcccccCCCc----cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          323 LCCICFENLCT----IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       323 ~C~iC~~~~~~----~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      .|.||++....    +...+|||.||..|+..|-..          ....||+||+++.
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~----------~~~~CP~CR~~~~   50 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----------ENGLCPACRKPYP   50 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTT----------SCCBCTTTCCBCS
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhh----------cCCCCCccCCcCC
Confidence            59999987533    344689999999999999322          2257999999875

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=4.2e-08  Score=72.00  Aligned_cols=50  Identities=18%  Similarity=0.061  Sum_probs=42.1

Q ss_pred             CCCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          319 SDVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       319 ~~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      .+...|.||++-..+++.++|||.||..|...+-...          ...||+||.++..
T Consensus         5 P~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~----------~~~cP~c~~~l~~   54 (80)
T d2c2la2           5 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV----------GHFNPVTRSPLTQ   54 (80)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT----------CSSCTTTCCCCCG
T ss_pred             CccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcC----------CccCCCccccccc
Confidence            3556799999999999999999999999999984332          2579999999864

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.47  E-value=6.4e-08  Score=70.65  Aligned_cols=51  Identities=14%  Similarity=0.097  Sum_probs=42.6

Q ss_pred             CCccCcccccCCCccEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccceee
Q 012618          320 DVELCCICFENLCTIEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANLV  380 (460)
Q Consensus       320 ~~~~C~iC~~~~~~~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~~  380 (460)
                      +...|.||++-..+++.++|||.||..|...|...+          ...||+||.++....
T Consensus         7 ~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~----------~~~cP~~~~~l~~~~   57 (78)
T d1t1ha_           7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG----------HKTCPKSQETLLHAG   57 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT----------CCBCTTTCCBCSSCC
T ss_pred             ccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHC----------CCCCCcccccCCccc
Confidence            456799999999999999999999999999984332          367999999986543

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=7.5e-08  Score=75.92  Aligned_cols=50  Identities=30%  Similarity=0.662  Sum_probs=36.8

Q ss_pred             CccCcccccCCCc------------------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccc
Q 012618          321 VELCCICFENLCT------------------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSI  376 (460)
Q Consensus       321 ~~~C~iC~~~~~~------------------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i  376 (460)
                      .+.|.||++....                  +..++|||.||..|+..|..+..      ......||+||..+
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~------~~~~~~CP~CR~~~   92 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN------KDGSLQCPSCKTIY   92 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC------CSSCCBCTTTCCBS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcC------cCCCCccccccchh
Confidence            3469999986532                  45689999999999999965431      11236799999875

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.5e-08  Score=74.27  Aligned_cols=43  Identities=23%  Similarity=0.485  Sum_probs=36.0

Q ss_pred             ccCcccccCCCccEec-CCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          322 ELCCICFENLCTIEIK-PCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~-~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      ..|.||++.+.+++.+ +|||.||..|+..|.             ...||+||.++.
T Consensus        23 l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~-------------~~~CP~Cr~~~~   66 (97)
T d1jm7b_          23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCI-------------GTGCPVCYTPAW   66 (97)
T ss_dssp             TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT-------------TTBCSSSCCBCS
T ss_pred             CCCccCCchhhcCceeCCCCCchhHHHHHHHH-------------hccccccCCcCc
Confidence            4599999999999874 899999999998772             135999998874

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.7e-07  Score=68.83  Aligned_cols=33  Identities=18%  Similarity=0.405  Sum_probs=27.5

Q ss_pred             cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          334 IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       334 ~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      +..++|||.||..|+..|-..+           ..||+||++-.
T Consensus        52 ~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREWE   84 (88)
T ss_dssp             EEEETTSCEEEHHHHHHHHTTC-----------SBCSSSCSBCC
T ss_pred             eEEccccCcccHHHHHHHHHHC-----------CcCCCCCCccc
Confidence            4567999999999999995444           67999999854

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.9e-06  Score=65.30  Aligned_cols=51  Identities=18%  Similarity=0.165  Sum_probs=42.5

Q ss_pred             CCCCCccCcccccCCCccEecCCCC-ccchhhHHHHhhcCCCCcccCCCCCCCCcccccccce
Q 012618          317 EASDVELCCICFENLCTIEIKPCGH-QMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIAN  378 (460)
Q Consensus       317 ~~~~~~~C~iC~~~~~~~~~~~CgH-~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~  378 (460)
                      +..+...|.||++-..+++.+|||| .||..|+..|...+           ..||+||.++..
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~-----------~~~P~~~~~l~~   69 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-----------QTDPFNRSPLTM   69 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-----------CBCTTTCSBCCT
T ss_pred             CCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhc-----------CCcccccccccc
Confidence            3445678999999999999999876 79999999994333           679999999864

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.09  E-value=7.2e-07  Score=61.21  Aligned_cols=51  Identities=24%  Similarity=0.485  Sum_probs=38.9

Q ss_pred             CCCCccCcccccCCCccEecCC-----CCccchhhHHHHhhcCCCCcccCCCCCCCCcccccccc
Q 012618          318 ASDVELCCICFENLCTIEIKPC-----GHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIA  377 (460)
Q Consensus       318 ~~~~~~C~iC~~~~~~~~~~~C-----gH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~  377 (460)
                      ..+...|.||++...+....||     +|.||..|+..|-..+         +...||+||+++.
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~---------~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTIS---------RNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHH---------TCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhC---------CCCCCcccCCeee
Confidence            3456789999998777666666     4999999999995443         1267999999853

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=2.9e-05  Score=58.17  Aligned_cols=52  Identities=17%  Similarity=0.407  Sum_probs=36.1

Q ss_pred             CccCcccccCCCc---cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCcccccc
Q 012618          321 VELCCICFENLCT---IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCS  375 (460)
Q Consensus       321 ~~~C~iC~~~~~~---~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~  375 (460)
                      ...|.||++....   +.+.+|||.||..|+..+......   +.......||.|+-+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~---~~~~~~i~CP~~~C~   59 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK---EGLETAISCPDAACP   59 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH---HCSCCCEECSCTTCS
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHh---cCCccccCCcCCCCC
Confidence            3569999998754   455689999999999988654421   112233579986643

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.36  E-value=0.027  Score=39.17  Aligned_cols=53  Identities=23%  Similarity=0.538  Sum_probs=39.3

Q ss_pred             CCCCCccCcccccCCCc-------cEecCCCCccchhhHHHHhhcCCCCcccCCCCCCCCccccccccee
Q 012618          317 EASDVELCCICFENLCT-------IEIKPCGHQMCAHCTLALCCHKKPDIITAVPEVPACPFCRCSIANL  379 (460)
Q Consensus       317 ~~~~~~~C~iC~~~~~~-------~~~~~CgH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~Cr~~i~~~  379 (460)
                      .....+.|.||-+..-.       +++..|+-.+|..|+.+-          .......||-|+.+-++.
T Consensus        12 ~~~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYE----------rkeG~q~CpqCkt~Ykr~   71 (93)
T d1weoa_          12 KNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYE----------RREGTQNCPQCKTRYKRL   71 (93)
T ss_dssp             SCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHH----------HHTSCSSCTTTCCCCCCC
T ss_pred             hhcccchhhhcccccccCCCCCEEEEecccCCccchHHHHHH----------HhccCccCcccCChhhhh
Confidence            34456889999986543       555678888899999887          333447899999987664

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.35  E-value=0.075  Score=35.43  Aligned_cols=51  Identities=24%  Similarity=0.491  Sum_probs=34.9

Q ss_pred             ccCcccccCCCccEecCC----CCccchhhHHHHhhcCCCCcccCCCCCCCCccc
Q 012618          322 ELCCICFENLCTIEIKPC----GHQMCAHCTLALCCHKKPDIITAVPEVPACPFC  372 (460)
Q Consensus       322 ~~C~iC~~~~~~~~~~~C----gH~~C~~C~~~~~~~~~~~~~~~~~~~~~CP~C  372 (460)
                      ..|.+|.++..+..|.-|    +|.||..|+...-........---+...+||+=
T Consensus         9 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q~~~~evyCPSG~kCpL~   63 (80)
T d2cs3a1           9 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLV   63 (80)
T ss_dssp             CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCS
T ss_pred             eeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHhcCCCCcEECCCCCccccC
Confidence            569999999999988878    789999999776443322211122445666653