Citrus Sinensis ID: 012675

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
Protein Sequence
MNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRRHSEV
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHcccHHHHHHHHcHHHHccccHHHHHHHcccccccEEEEEEccccHHHHHcccccccEEEEEccccccEEEEEEEEEEEccccccccccccccEEEEEEEEEEEEEEEEEEEccccccEEccccccccEEEEEEEEEcccccccEEEEEEccccccccEEEEEEEEEcccccEEEEEEEEEEccEEEEEEcEEEEEEccccHHHHccccccEEEEccccccccHHccccccccccccccccccccEEEEEEccccccccEEEEEcccccccccEEcccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEccccccEEEEEEccccHHHHHcccccccEEEEcccccccccEEEEEEEEEccccccHEEcccccEEEEEcccEccccEEEEEccccccccEEEccccccEEEEEEEccccccccEEEEEEEEccccccEEEEEEEEEEEccccHHHEEEEEEcccccHHEcccEEEccccccccEEEEEcccEEEEccccHHHHHHHccccccccccccccccccccEEEcHHHHHHHccEEEEEEcccccccccccccHHccccccccccccccHHHHHHHcccccccccccccccEEccccccccccccHHHHHHcccccccccccccccccHccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccc
Coil and Loop (DISEMBL)
mnekdgakfhcgqpneiglVDQMKEEIEFRKQMNIaelndldevtrlelegfrtgtylrmeihdvpfemveyfdpchpvlvggiglgeqNVGYMQVRLKRHRWWHkkvlksrdpiivsigwrrfqtipvyaiedrsgrhrmlkytpehmhclatfwgplappqtgvVAVQNLSNNQASFRIAATAVVLEFNHevkikkkiklvgypckifkkTALIKDMFTSDLEVAQCegkevrtvsgirGQVKKAAKEeignqpkrkggqpregiarctfedrilMSDIVFMRgwadveiprfynplttalqprDKIWQGMKTVAELRREHnlsipvnknslykpigrtprkfnplvipkslqaalpfeskpkdipgrkrpllenrravvmepherKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRRHSEV
Flexible Loop (DISEMBL)
mnekdgakfhcgqpneiglVDQMKEEIEFRKQMNiaelndldevtrLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRhrwwhkkvlksrdpiivsigwrrfqtipvyaiedrsGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFnhevkikkkiklvgypcKIFKKTALIKDMFTSDLEVAQCegkevrtvsgirgqvkkaakeeignqpkrkggqpregiaRCTFEDRILMSDIVFMRGWADVEIPRFYNplttalqprdkIWQGMKTVAELRrehnlsipvnknslykpiGRTPRKFNPLVIPKSLqaalpfeskpkdipgrkrpLLENRRavvmepherkvHVLFQQLQLIRNEKMKkrklkqqhrkkeieaerakdeqltrkrqreerreryreqdklmkkirrhsev
Low Complexity Region (SEG)
MNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEkmkkrklkqqhrkkEIEAERAKDeqltrkrqreerreryreqDKLMKKIRRHSEV
Disordered region (IsUnstruct)
****************IGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVS****************************IARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIP************************************RKVHVLFQQLQLI**********************************************************
Disordered Region (DISOPRED)
***********GQPNEIGLVDQMKEEIEFRKQM************RLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRD***********LRRE*NLS*****************KFNPLVIPKSLQAALP***************************ERKVHVLFQQLQLI**********************************************************
Disordered Region (DISEMBL)
********FHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRG**********************EGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKM***************************************QDKL**********
Disordered Region (DISPRO)
****************IGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKE**************EGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKD****KRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQD************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDKLMKKIRRHSEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	458	2.2.26 [Sep-21-2011]
Q14692	1282	Ribosome biogenesis prote	yes	no	0.851	0.304	0.520	1e-118
O94653	1121	Ribosome biogenesis prote	yes	no	0.903	0.369	0.473	1e-105
Q08965	1183	Ribosome biogenesis prote	yes	no	0.895	0.346	0.413	3e-89
A8MV67	101	Putative BMS1-like protei	no	no	0.218	0.990	0.643	1e-34
A8MXU9	101	Putative BMS1-like protei	no	no	0.218	0.990	0.623	2e-33
A8MTN0	101	Putative BMS1-like protei	no	no	0.218	0.990	0.613	1e-32
Q5SWD9	803	Pre-rRNA-processing prote	no	no	0.521	0.297	0.246	3e-18
Q5XGY1	815	Pre-rRNA-processing prote	N/A	no	0.524	0.294	0.249	6e-18
Q9VP47	814	Pre-rRNA-processing prote	no	no	0.473	0.266	0.259	3e-14
Q2NL82	804	Pre-rRNA-processing prote	no	no	0.379	0.216	0.257	1e-13

>sp|Q14692|BMS1_HUMAN Ribosome biogenesis protein BMS1 homolog OS=Homo sapiens GN=BMS1 PE=1 SV=1

 Score =  425 bits (1092), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/407 (52%), Positives = 276/407 (67%), Gaps = 17/407 (4%)

Query: 15   NEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFD 74
             E    D +K E++ + Q+N AE  D D+  R++ EGFR G Y+R+EI +VP E V+ FD
Sbjct: 843  GESTYFDDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFD 902

Query: 75   PCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIED 134
            P +P+++GG+G  E NVGY+Q+RLK+HRW+ KK+LKSRDPII S+GWRRFQTIP+Y IED
Sbjct: 903  PHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIED 961

Query: 135  RSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEV 194
             +GR R+LKYTP+HMHC A FWGP+ P  TG +A+Q++S     FRIAAT VVL+ +  +
Sbjct: 962  HNGRQRLLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSI 1021

Query: 195  KIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGN 254
            KI KK+KL G+P KIFK T+ IK MF S LEVA+ EG  +RTVSGIRGQ+KKA +     
Sbjct: 1022 KIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAP--- 1078

Query: 255  QPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQP--RDKIWQG 312
                      EG  R +FED++LMSDIVFMR W  V IP FYNP+T+ L+P      W G
Sbjct: 1079 ----------EGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSG 1128

Query: 313  MKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPK-DIPGRK 371
            M+T  +LR  H + +  NK+SLYKPI R  + FN L IPK+LQ ALPF++KPK      K
Sbjct: 1129 MRTTGQLRLAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGK 1188

Query: 372  RPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKE 418
             P    R AV+ EPHERK+  L   L  + ++KMKK K ++    KE
Sbjct: 1189 VPKDRRRPAVIREPHERKILALLDALSTVHSQKMKKAKEQRHLHNKE 1235

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.
Homo sapiens (taxid: 9606)

>sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bms1 PE=1 SV=2

 Score =  384 bits (985), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/431 (47%), Positives = 274/431 (63%), Gaps = 17/431 (3%)

Query: 24   KEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGG 83
            KE+I  +  +N     D+D  +R E+EG+R GTY+R+ I+DVPFE VE+FD  +PV+VGG
Sbjct: 692  KEKIARQLVINREAFEDMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYPVVVGG 751

Query: 84   IGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLK 143
            +   EQ  G +QVR+KRHRW HKK+LK+ DP+I S+GWRRFQ+IPVY+I D   R+RMLK
Sbjct: 752  LLPNEQRYGLVQVRIKRHRW-HKKILKTNDPLIFSMGWRRFQSIPVYSISDSRTRNRMLK 810

Query: 144  YTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQA---SFRIAATAVVLEFNHEVKIKKKI 200
            YTPEHMHC  TF+GP   P +G  AVQ+++N+ A   SFRIAAT  VL  +    I KK+
Sbjct: 811  YTPEHMHCFGTFYGPFVAPNSGFCAVQSVANSFAKAGSFRIAATGSVLNIDQSTDIVKKL 870

Query: 201  KLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKG 260
            KL G P KIFK TA IK MF+S LEVA+ EG  +RTVSGIRGQVKKA  +E G+      
Sbjct: 871  KLTGVPYKIFKNTAFIKKMFSSPLEVAKFEGANIRTVSGIRGQVKKAVDQEHGH------ 924

Query: 261  GQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELR 320
                    R TFED+ILMSDIVF+R W  V++ +F   +T  L+     W GM+   E+R
Sbjct: 925  -------FRATFEDKILMSDIVFLRAWYPVQVRKFCTMVTNLLETDKTEWNGMRLTGEVR 977

Query: 321  REHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRA 380
             E  L  P+  NS Y+ I R  R FNPL +P SLQA LPF S+ K +  R +P    +R 
Sbjct: 978  HELGLKTPLRPNSQYQEIVRPSRHFNPLKVPASLQAQLPFNSRQKALRPRSKPTYMQKRT 1037

Query: 381  VVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRE 440
            V++   ERKV  L Q++  +  +K  KRK K+    +       K+EQ   +++REE+ E
Sbjct: 1038 VLLNAEERKVRDLLQKVMTLHTDKEAKRKAKKAAEHERYHKRMQKEEQAYIEKKREEKAE 1097

Query: 441  RYREQDKLMKK 451
             + +  K +++
Sbjct: 1098 WFAQHGKRLRQ 1108

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q08965|BMS1_YEAST Ribosome biogenesis protein BMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BMS1 PE=1 SV=1

 Score =  329 bits (843), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/426 (41%), Positives = 264/426 (61%), Gaps = 16/426 (3%)

Query: 24   KEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGG 83
            K +I  + ++N  E  ++    R  +EGF+ G+Y+R+    VP E V+ F+P  P+++GG
Sbjct: 755  KAKISKQLEINNIEYQEMTPEQRQRIEGFKAGSYVRIVFEKVPMEFVKNFNPKFPIVMGG 814

Query: 84   IGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLK 143
            +   E   G ++ RL+RHRW HKK+LK+ DP+++S+GWRRFQT+P+Y   D   R RMLK
Sbjct: 815  LLPTEIKFGIVKARLRRHRW-HKKILKTNDPLVLSLGWRRFQTLPIYTTTDSRTRTRMLK 873

Query: 144  YTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQAS--FRIAATAVVLEFNHEVKIKKKIK 201
            YTPEH +C A F+GPL  P T    VQ ++N+     FRIAAT +V E +  ++I KK+K
Sbjct: 874  YTPEHTYCNAAFYGPLCSPNTPFCGVQIVANSDTGNGFRIAATGIVEEIDVNIEIVKKLK 933

Query: 202  LVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGG 261
            LVG+P KIFK TA IKDMF+S +EVA+ EG +++TVSGIRG++K+A      ++P     
Sbjct: 934  LVGFPYKIFKNTAFIKDMFSSAMEVARFEGAQIKTVSGIRGEIKRAL-----SKP----- 983

Query: 262  QPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRR 321
               EG  R  FED+ILMSDIV +R W  V + +FYNP+T+ L      W+G++   ++R 
Sbjct: 984  ---EGHYRAAFEDKILMSDIVILRSWYPVRVKKFYNPVTSLLLKEKTEWKGLRLTGQIRA 1040

Query: 322  EHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAV 381
              NL  P N +S Y  I R  R FN L +PK++Q  LPF+S+   +  +K+     +RAV
Sbjct: 1041 AMNLETPSNPDSAYHKIERVERHFNGLKVPKAVQKELPFKSQIHQMKPQKKKTYMAKRAV 1100

Query: 382  VMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRER 441
            V+   E+K     Q++  I   K  KRK ++  ++KE   + AK E+   +R +E+++E 
Sbjct: 1101 VLGGDEKKARSFIQKVLTISKAKDSKRKEQKASQRKERLKKLAKMEEEKSQRDKEKKKEY 1160

Query: 442  YREQDK 447
            + +  K
Sbjct: 1161 FAQNGK 1166

May act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus. The depletion of BMS1 interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A8MV67|YO021_HUMAN Putative BMS1-like protein ENSP00000383088 OS=Homo sapiens PE=5 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 84/101 (83%), Gaps = 1/101 (0%)

Query: 57  YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 116
           Y+R+EI +VP E V+  DP +P+++GG+G  E NVGY+Q+RLK+HRW +KK+LKSRDPII
Sbjct: 2   YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVQMRLKKHRW-YKKILKSRDPII 60

Query: 117 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 157
            S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FW 
Sbjct: 61  FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101

Homo sapiens (taxid: 9606)

>sp|A8MXU9|YO022_HUMAN Putative BMS1-like protein ENSP00000383048 OS=Homo sapiens PE=5 SV=1

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 83/101 (82%), Gaps = 1/101 (0%)

Query: 57  YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 116
           Y+R+EI +VP E V+  DP +P+++GG+G  E NVGY+++ LK+HRW +KK+LKSRDPII
Sbjct: 2   YVRVEIENVPCEFVQNIDPHYPIILGGLGNSEGNVGYVEMHLKKHRW-YKKILKSRDPII 60

Query: 117 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 157
            S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC A FW 
Sbjct: 61  FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWA 101

Homo sapiens (taxid: 9606)

>sp|A8MTN0|YI027_HUMAN Putative BMS1-like protein ENSP00000382360 OS=Homo sapiens PE=5 SV=1

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 84/101 (83%), Gaps = 1/101 (0%)

Query: 57  YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 116
           Y+R+EI +VP E V+ FDP +P+++GG+G  E NVG++Q+RLK+HRW +KK+LKS+DPII
Sbjct: 2   YVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGHVQMRLKKHRW-YKKILKSQDPII 60

Query: 117 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWG 157
            S+GWRRFQTI +Y IED +GR R+LKYTP+H+HC A FW 
Sbjct: 61  FSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGAAFWA 101

Homo sapiens (taxid: 9606)

>sp|Q5SWD9|TSR1_MOUSE Pre-rRNA-processing protein TSR1 homolog OS=Mus musculus GN=Tsr1 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 122/256 (47%), Gaps = 17/256 (6%)

Query: 43  EVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHR 102
           E+   E EG   G Y+ + + DVP  +VEYF    P++   +   EQ +  + + + R+ 
Sbjct: 542 EIEEKEAEGAEVGWYVTLHVSDVPVSVVEYFRQGAPLIAFSLLPYEQKMSVLNMVVSRNP 601

Query: 103 WWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPP 162
             + + +K+++ +I   G+RRF+  P+++    + +H+  ++       + T + P+  P
Sbjct: 602 G-NTEPVKAKEELIFHCGFRRFRASPLFSQHTAADKHKFQRFLTADAAFVVTVFAPITFP 660

Query: 163 QTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTS 222
              V+  +   N   S  + AT  +   + +  + K++ L G+P KIF K A+++ MF +
Sbjct: 661 PASVLLFKQRRNGMHS--LIATGHLFSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFN 718

Query: 223 DLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIV 282
             +V   +  E+RT  G RG +    KE +G            G  +C+F+ ++   D V
Sbjct: 719 REDVMWFKPVELRTKWGRRGHI----KEPLGTH----------GHMKCSFDGKLKSQDTV 764

Query: 283 FMRGWADVEIPRFYNP 298
            M  +  V     Y+P
Sbjct: 765 LMNLYKRVFPKWTYDP 780

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Mus musculus (taxid: 10090)

>sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog OS=Xenopus laevis GN=tsr1 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 123/261 (47%), Gaps = 21/261 (8%)

Query: 50  EGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVL 109
           EG   G Y+ + I  VP  ++E+F    P+++  +   EQ +  M + ++RH   + + +
Sbjct: 561 EGAMVGWYVTVHISAVPVSVMEHFKHGLPLVLCSLLPHEQKMSVMNMLVRRHPG-NNEPI 619

Query: 110 KSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAV 169
           K+++ +I   G+RRF+  P+++    + +H+  ++       + T + P+  P   V+  
Sbjct: 620 KAKEELIFHCGFRRFRASPLFSQHSSADKHKSERFLRSDTSVVVTVYAPITFPPASVLVF 679

Query: 170 QNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQC 229
           +   N      + AT  +L  N +  + K+I L G+P KI K+TA+++ MF +  +V   
Sbjct: 680 KQRYNGMQD--LVATGSLLNVNPDRIVIKRIVLSGHPFKIMKRTAVVRYMFFNREDVLWF 737

Query: 230 EGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWAD 289
           +  E+RT  G RG +    KE +G            G  +C F+ ++   D V M  +  
Sbjct: 738 KPVELRTKWGRRGHI----KEPLGTH----------GHMKCHFDGQLKSQDTVLMNLYKR 783

Query: 290 VEIPRFYNPLTTALQPRDKIW 310
           V     ++P      PR   W
Sbjct: 784 VYPKWTFDPYV----PRPVTW 800

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Xenopus laevis (taxid: 8355)

>sp|Q9VP47|TSR1_DROME Pre-rRNA-processing protein TSR1 homolog OS=Drosophila melanogaster GN=CG7338 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 26/243 (10%)

Query: 48  ELEGFRTGTYLRMEIHDVP------FEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRH 101
           E EG   G Y+ + + +VP      F+  +  D    ++V G+   E  +  M V L+R 
Sbjct: 551 EFEGVLPGLYVTLYVINVPESRWNAFKSAQLMDN---IIVYGMLPHEHQMCVMNVVLQRM 607

Query: 102 RWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAP 161
               +  LKS++ +I+  G+RRF   P+Y+      +H+  +Y   +    ATF+ P+  
Sbjct: 608 PD-SEVPLKSKEQLIIQCGYRRFVVNPIYSQHTNGDKHKFERYFRPYETVCATFYAPIQF 666

Query: 162 PQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFT 221
           P   V+A +   N  ++  + A   +L  N +  + K++ L G+P +I +K+A I+ MF 
Sbjct: 667 PPAPVLAFK--VNPDSTLALVARGRLLSCNPDRIVLKRVVLSGHPMRINRKSASIRYMFF 724

Query: 222 SDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDI 281
              +V   +  ++RT  G  G +    KE +G            G  +C F+ ++   D 
Sbjct: 725 YKEDVEYFKPVKLRTKCGRLGHI----KESLGTH----------GHMKCYFDGQLRSYDT 770

Query: 282 VFM 284
            FM
Sbjct: 771 AFM 773

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Drosophila melanogaster (taxid: 7227)

>sp|Q2NL82|TSR1_HUMAN Pre-rRNA-processing protein TSR1 homolog OS=Homo sapiens GN=TSR1 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 16/190 (8%)

Query: 109 LKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVA 168
           +K+++ +I   G+RRF+  P+++    + +H++ ++    M  +AT + P+  P   V+ 
Sbjct: 608 VKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLL 667

Query: 169 VQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQ 228
            +  SN   S  + AT  ++  + +  + K++ L G+P KIF K A+++ MF +  +V  
Sbjct: 668 FKQKSNGMHS--LIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLW 725

Query: 229 CEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWA 288
            +  E+RT  G RG +    KE +G            G  +C+F+ ++   D V M  + 
Sbjct: 726 FKPVELRTKWGRRGHI----KEPLGTH----------GHMKCSFDGKLKSQDTVLMNLYK 771

Query: 289 DVEIPRFYNP 298
            V     Y+P
Sbjct: 772 RVFPKWTYDP 781

Required during maturation of the 40S ribosomal subunit in the nucleolus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
298205174	1305	unnamed protein product [Vitis vinifera]	0.989	0.347	0.784	0.0
359477919	1139	PREDICTED: ribosome biogenesis protein B	0.989	0.397	0.781	0.0
356544500	1181	PREDICTED: ribosome biogenesis protein B	0.973	0.377	0.786	0.0
224133372	1181	predicted protein [Populus trichocarpa]	0.995	0.386	0.788	0.0
356541129	1176	PREDICTED: ribosome biogenesis protein B	0.973	0.379	0.790	0.0
357473081	1200	Ribosome biogenesis protein BMS1-like pr	0.975	0.372	0.773	0.0
357473083	1175	Ribosome biogenesis protein BMS1-like pr	0.975	0.380	0.773	0.0
449444194	1198	PREDICTED: ribosome biogenesis protein B	0.965	0.368	0.748	0.0
297848950	1148	hypothetical protein ARALYDRAFT_470695 [	0.954	0.380	0.710	1e-177
7523707	1138	Putative membrane protein [Arabidopsis t	0.971	0.391	0.688	1e-172

>gi|298205174|emb|CBI17233.3| unnamed protein product [Vitis vinifera]

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/454 (78%), Positives = 405/454 (89%), Gaps = 1/454 (0%)

Query: 1    MNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRM 60
            +N + G+KFH  Q NE G  D++KEE+E RKQMN+AELNDLDE TR+E+EGFRTGTYLR+
Sbjct: 851  INAEHGSKFHHRQANESGFFDKLKEEVELRKQMNMAELNDLDEETRIEVEGFRTGTYLRL 910

Query: 61   EIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIG 120
            E+HDVPFEMVE+FDP HPVLVGGIGLGE+NVGYMQVR+KRHRW HKK+LK+RDPIIVSIG
Sbjct: 911  EVHDVPFEMVEHFDPFHPVLVGGIGLGEENVGYMQVRIKRHRW-HKKLLKTRDPIIVSIG 969

Query: 121  WRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFR 180
            WRR+QTIPVYA ED +GRHRMLKYT EHMHCLA FWGPLAPP TGVVAVQNLSNNQA+FR
Sbjct: 970  WRRYQTIPVYATEDCNGRHRMLKYTKEHMHCLAMFWGPLAPPNTGVVAVQNLSNNQATFR 1029

Query: 181  IAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGI 240
            I ATAVVLEFNH  ++ KKIKLVG PCKIFKKTALIK+MFTSDLE+A+ EG  V+T SGI
Sbjct: 1030 IIATAVVLEFNHAARLVKKIKLVGEPCKIFKKTALIKNMFTSDLEIARFEGAAVQTASGI 1089

Query: 241  RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLT 300
            RGQVKKAAKEE+GNQPK+KGG PREGIARCTFEDRILMSD+VF+R W +VE+P F+NPLT
Sbjct: 1090 RGQVKKAAKEELGNQPKKKGGLPREGIARCTFEDRILMSDLVFLRAWTEVEVPCFFNPLT 1149

Query: 301  TALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPF 360
            TALQPRD+ WQGMKTVAELRRE+ L +PVNK+SLY+PI R  RKFNPLVIPKSLQAALPF
Sbjct: 1150 TALQPRDQTWQGMKTVAELRRENKLPVPVNKDSLYRPIERKARKFNPLVIPKSLQAALPF 1209

Query: 361  ESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIE 420
             SKPKDI  RK+PLLENRRAVVMEPHERKVH L Q LQ+IRNEKMKKRKLK+  ++K  E
Sbjct: 1210 ASKPKDILKRKKPLLENRRAVVMEPHERKVHALVQHLQMIRNEKMKKRKLKETEKRKRFE 1269

Query: 421  AERAKDEQLTRKRQREERRERYREQDKLMKKIRR 454
            AE+AK+EQ++RKRQREER+ERYR QDK  K+IR+
Sbjct: 1270 AEKAKEEQVSRKRQREERKERYRAQDKQSKRIRK 1303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477919|ref|XP_002270164.2| PREDICTED: ribosome biogenesis protein BMS1 homolog [Vitis vinifera]

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/454 (78%), Positives = 407/454 (89%), Gaps = 1/454 (0%)

Query: 1    MNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRM 60
            +++++G+KFH  Q NE G  D++KEE+E RKQMN+AELNDLDE TR+E+EGFRTGTYLR+
Sbjct: 685  IHKENGSKFHHRQANESGFFDKLKEEVELRKQMNMAELNDLDEETRIEVEGFRTGTYLRL 744

Query: 61   EIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIG 120
            E+HDVPFEMVE+FDP HPVLVGGIGLGE+NVGYMQVR+KRHRW HKK+LK+RDPIIVSIG
Sbjct: 745  EVHDVPFEMVEHFDPFHPVLVGGIGLGEENVGYMQVRIKRHRW-HKKLLKTRDPIIVSIG 803

Query: 121  WRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFR 180
            WRR+QTIPVYA ED +GRHRMLKYT EHMHCLA FWGPLAPP TGVVAVQNLSNNQA+FR
Sbjct: 804  WRRYQTIPVYATEDCNGRHRMLKYTKEHMHCLAMFWGPLAPPNTGVVAVQNLSNNQATFR 863

Query: 181  IAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGI 240
            I ATAVVLEFNH  ++ KKIKLVG PCKIFKKTALIK+MFTSDLE+A+ EG  V+T SGI
Sbjct: 864  IIATAVVLEFNHAARLVKKIKLVGEPCKIFKKTALIKNMFTSDLEIARFEGAAVQTASGI 923

Query: 241  RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLT 300
            RGQVKKAAKEE+GNQPK+KGG PREGIARCTFEDRILMSD+VF+R W +VE+P F+NPLT
Sbjct: 924  RGQVKKAAKEELGNQPKKKGGLPREGIARCTFEDRILMSDLVFLRAWTEVEVPCFFNPLT 983

Query: 301  TALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPF 360
            TALQPRD+ WQGMKTVAELRRE+ L +PVNK+SLY+PI R  RKFNPLVIPKSLQAALPF
Sbjct: 984  TALQPRDQTWQGMKTVAELRRENKLPVPVNKDSLYRPIERKARKFNPLVIPKSLQAALPF 1043

Query: 361  ESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIE 420
             SKPKDI  RK+PLLENRRAVVMEPHERKVH L Q LQ+IRNEKMKKRKLK+  ++K  E
Sbjct: 1044 ASKPKDILKRKKPLLENRRAVVMEPHERKVHALVQHLQMIRNEKMKKRKLKETEKRKRFE 1103

Query: 421  AERAKDEQLTRKRQREERRERYREQDKLMKKIRR 454
            AE+AK+EQ++RKRQREER+ERYR QDK  K+IR+
Sbjct: 1104 AEKAKEEQVSRKRQREERKERYRAQDKQSKRIRK 1137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544500|ref|XP_003540688.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max]

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/449 (78%), Positives = 395/449 (87%), Gaps = 3/449 (0%)

Query: 8    KFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPF 67
            K H GQ NE    D++KEEIE +KQMNIAELNDLDE TRLE+EGF+TGTYLR+EI DVP 
Sbjct: 731  KNHRGQANESSYFDKLKEEIELQKQMNIAELNDLDEATRLEIEGFQTGTYLRLEIRDVPC 790

Query: 68   EMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTI 127
            EMVEYFDP HP+LVGGIG+GE+NVGYMQ RLKRHRW HKKVLK+RDPIIVS+GWRR+QT 
Sbjct: 791  EMVEYFDPYHPILVGGIGIGEENVGYMQARLKRHRW-HKKVLKTRDPIIVSVGWRRYQTT 849

Query: 128  PVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVV 187
            P+YAIED +GRHRMLKYTPEHMHCLA FWGPLAPP TGVVA+QNLSNNQA+FRI ATAVV
Sbjct: 850  PIYAIEDSNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVVAIQNLSNNQATFRITATAVV 909

Query: 188  LEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKA 247
            LEFNH  +I KKIKLVGYPCKIFKKTALIKDMFTSDLEVA+ EG  +RTVSGIRGQVKKA
Sbjct: 910  LEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKA 969

Query: 248  AKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRD 307
            AKEEIGNQ KRKGGQ +EGIARCTFED+ILMSDIVF+R W  VE+P+FYNPLTTALQPRD
Sbjct: 970  AKEEIGNQAKRKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRD 1029

Query: 308  KIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDI 367
              W+GM+TVAELRREHNL IPVNK+SLYK I R PRKFNPLVIPKSLQA+LPF SKPKDI
Sbjct: 1030 MTWKGMRTVAELRREHNLPIPVNKDSLYKKIERKPRKFNPLVIPKSLQASLPFASKPKDI 1089

Query: 368  PGRKRPLLENR--RAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAK 425
              R +PLLE R  R VVMEP ERKVH L Q LQLI +EK+KKRKLK+++++K +EAER K
Sbjct: 1090 SKRNKPLLEERRGRGVVMEPRERKVHALVQHLQLINSEKVKKRKLKEENKRKALEAERTK 1149

Query: 426  DEQLTRKRQREERRERYREQDKLMKKIRR 454
            +EQL RKRQREERR++YR++DK  KKIRR
Sbjct: 1150 EEQLLRKRQREERRDKYRKEDKQNKKIRR 1178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133372|ref|XP_002328026.1| predicted protein [Populus trichocarpa] gi|222837435|gb|EEE75814.1| predicted protein [Populus trichocarpa]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/458 (78%), Positives = 408/458 (89%), Gaps = 2/458 (0%)

Query: 1    MNEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRM 60
            ++EK GAKFH GQ NE G +D++KEEIE RKQ NIAELNDLDE TRLE+EGF+TGTYLR+
Sbjct: 726  VDEKHGAKFHRGQANESGYIDKLKEEIEIRKQRNIAELNDLDEETRLEIEGFQTGTYLRL 785

Query: 61   EIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIG 120
            E+HDVPFEMVE+FDPC P+LVGGIGLGE++VGYMQ RLKRHRW H+KVLK++DP+I SIG
Sbjct: 786  ELHDVPFEMVEHFDPCDPILVGGIGLGEEHVGYMQARLKRHRW-HRKVLKTKDPVIFSIG 844

Query: 121  WRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFR 180
            WRR+QT PVYAIEDR+GRHRMLKYTPEHMHCLATFWGPLAPP TGVVAVQNL+NNQASFR
Sbjct: 845  WRRYQTTPVYAIEDRNGRHRMLKYTPEHMHCLATFWGPLAPPNTGVVAVQNLANNQASFR 904

Query: 181  IAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGI 240
            I ATAVVLEFNH  K+ KK+KLVG+PCKIFKKTALI +MFTSDLEVA+ EG  VRTVSGI
Sbjct: 905  ITATAVVLEFNHAAKMVKKVKLVGHPCKIFKKTALIMNMFTSDLEVARFEGAAVRTVSGI 964

Query: 241  RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLT 300
            RGQVKKAAK+EIGNQP +KGG PREGIARCTFEDRILMSDIVF+R W  VE P FYNPLT
Sbjct: 965  RGQVKKAAKDEIGNQPTKKGGAPREGIARCTFEDRILMSDIVFLRAWTQVEAPCFYNPLT 1024

Query: 301  TALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPF 360
            TALQPR+K WQGMKTVAELRREHNL IPVNK+SLY+PI RTP+KFNPLVIPKSLQA LPF
Sbjct: 1025 TALQPRNKTWQGMKTVAELRREHNLPIPVNKDSLYRPIERTPKKFNPLVIPKSLQATLPF 1084

Query: 361  ESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIE 420
            ESKPKDIP + R  LE RRAVVMEP ERKVH L QQL+LI N+KM+KRKLK+   + ++E
Sbjct: 1085 ESKPKDIP-KGRATLERRRAVVMEPDERKVHALVQQLRLITNDKMRKRKLKKDQERNKLE 1143

Query: 421  AERAKDEQLTRKRQREERRERYREQDKLMKKIRRHSEV 458
            AE+AKDE+L+RKR+REERRERYR Q+KL KK RR+S+ 
Sbjct: 1144 AEKAKDEELSRKRKREERRERYRVQEKLKKKARRNSDA 1181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541129|ref|XP_003539035.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/449 (79%), Positives = 395/449 (87%), Gaps = 3/449 (0%)

Query: 8    KFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPF 67
            KF  GQ NE    D++KEEIE +KQMNIAELNDLDE TRLE+EGFRTGTYLR+EIHDVP 
Sbjct: 726  KFRRGQANESSYFDKLKEEIELQKQMNIAELNDLDEATRLEIEGFRTGTYLRLEIHDVPC 785

Query: 68   EMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTI 127
            EMVEYFDP HP+LVGGIG+GE+NVGYMQ RLKRHRW HKKVLK+RDPIIVS+GWRR+QT 
Sbjct: 786  EMVEYFDPYHPILVGGIGIGEENVGYMQARLKRHRW-HKKVLKTRDPIIVSVGWRRYQTT 844

Query: 128  PVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVV 187
            P+YAIED +GR RMLKYTPEHMHCLA FWGPLAPP TGVVA QNLSNNQA+FRI ATAVV
Sbjct: 845  PIYAIEDSNGRDRMLKYTPEHMHCLAMFWGPLAPPNTGVVAFQNLSNNQATFRITATAVV 904

Query: 188  LEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKA 247
            LEFNH  +I KKIKLVGYPCKIFKKTALIKDMFTSDLEVA+ EG  +RTVSGIRGQVKKA
Sbjct: 905  LEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKA 964

Query: 248  AKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRD 307
            AKEEIGNQ KRKGGQ +EGIARCTFED+ILMSDIVF+R W  VE+P+FYNPLTTALQPRD
Sbjct: 965  AKEEIGNQAKRKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRD 1024

Query: 308  KIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDI 367
              W+GMKTVAELRREHNL+IPVNK+SLYK I R PRKFNP+VIPKSLQA+LPF SKPKDI
Sbjct: 1025 MTWKGMKTVAELRREHNLAIPVNKDSLYKKIERKPRKFNPVVIPKSLQASLPFASKPKDI 1084

Query: 368  PGRKRPLLENRRA--VVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAK 425
              RK+PLLE RRA  VVMEP ERKVH L Q LQLI  EKMKKRKLK+++++K +EAE AK
Sbjct: 1085 SKRKKPLLEERRARGVVMEPRERKVHTLVQHLQLIDREKMKKRKLKEENKRKALEAESAK 1144

Query: 426  DEQLTRKRQREERRERYREQDKLMKKIRR 454
            +E L RKR+REERR++YR++DK  KKIRR
Sbjct: 1145 EELLLRKRRREERRDKYRKEDKQNKKIRR 1173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473081|ref|XP_003606825.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi|355507880|gb|AES89022.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/450 (77%), Positives = 395/450 (87%), Gaps = 3/450 (0%)

Query: 7    AKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVP 66
            AKFH  QPNE   +D++KEEIE RKQMNIAELNDLDE TRLE+EGFRTGTYLR+E+HDVP
Sbjct: 726  AKFHREQPNESNYIDKLKEEIELRKQMNIAELNDLDEDTRLEVEGFRTGTYLRLEVHDVP 785

Query: 67   FEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 126
             EMVE+FDP HP+LVGG+GLGE+NVGYMQ RLKRHRW HKKVLK+RDPIIVS+GWRR+QT
Sbjct: 786  CEMVEHFDPYHPILVGGVGLGEENVGYMQARLKRHRW-HKKVLKTRDPIIVSVGWRRYQT 844

Query: 127  IPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAV 186
             PVYAIED +GRHRMLKYTPEHMHCLA FWGPLAPP TG+VAVQ LSNNQA+FRI ATAV
Sbjct: 845  TPVYAIEDLNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQTLSNNQATFRITATAV 904

Query: 187  VLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKK 246
            V+EFNH  +I KKIKLVGYPCKIFKKTALIKDMFTSDLEVA+ EG  +RTVSGIRGQVKK
Sbjct: 905  VVEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKK 964

Query: 247  AAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPR 306
             AKEEIGNQPKRKGGQ +EGIARCTFED+ILMSDIVF+R W  VE+P+FYNPLTTALQPR
Sbjct: 965  VAKEEIGNQPKRKGGQIKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPR 1024

Query: 307  DKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKD 366
            D+ W+GM+TVAELRREHNL IPVNK+SLYK I R PRKFNPLVIPKSLQA LPFESKPK 
Sbjct: 1025 DQTWKGMRTVAELRREHNLPIPVNKDSLYKKIERKPRKFNPLVIPKSLQANLPFESKPKH 1084

Query: 367  IPGRKRPLLENRR--AVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERA 424
             P RKR   ++RR   VV+EP ERK+H L Q LQL++ EK+KKRK K+  ++K +EAERA
Sbjct: 1085 TPKRKRLSFDDRRQKGVVVEPRERKIHALVQHLQLMKTEKIKKRKHKEGEKRKVLEAERA 1144

Query: 425  KDEQLTRKRQREERRERYREQDKLMKKIRR 454
            K+E +++KR+REERR++YR QDKL KKIRR
Sbjct: 1145 KEELVSKKRRREERRDKYRTQDKLNKKIRR 1174

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473083|ref|XP_003606826.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula] gi|355507881|gb|AES89023.1| Ribosome biogenesis protein BMS1-like protein [Medicago truncatula]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/450 (77%), Positives = 395/450 (87%), Gaps = 3/450 (0%)

Query: 7    AKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVP 66
            AKFH  QPNE   +D++KEEIE RKQMNIAELNDLDE TRLE+EGFRTGTYLR+E+HDVP
Sbjct: 726  AKFHREQPNESNYIDKLKEEIELRKQMNIAELNDLDEDTRLEVEGFRTGTYLRLEVHDVP 785

Query: 67   FEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQT 126
             EMVE+FDP HP+LVGG+GLGE+NVGYMQ RLKRHRW HKKVLK+RDPIIVS+GWRR+QT
Sbjct: 786  CEMVEHFDPYHPILVGGVGLGEENVGYMQARLKRHRW-HKKVLKTRDPIIVSVGWRRYQT 844

Query: 127  IPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAV 186
             PVYAIED +GRHRMLKYTPEHMHCLA FWGPLAPP TG+VAVQ LSNNQA+FRI ATAV
Sbjct: 845  TPVYAIEDLNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQTLSNNQATFRITATAV 904

Query: 187  VLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKK 246
            V+EFNH  +I KKIKLVGYPCKIFKKTALIKDMFTSDLEVA+ EG  +RTVSGIRGQVKK
Sbjct: 905  VVEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKK 964

Query: 247  AAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPR 306
             AKEEIGNQPKRKGGQ +EGIARCTFED+ILMSDIVF+R W  VE+P+FYNPLTTALQPR
Sbjct: 965  VAKEEIGNQPKRKGGQIKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPR 1024

Query: 307  DKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKD 366
            D+ W+GM+TVAELRREHNL IPVNK+SLYK I R PRKFNPLVIPKSLQA LPFESKPK 
Sbjct: 1025 DQTWKGMRTVAELRREHNLPIPVNKDSLYKKIERKPRKFNPLVIPKSLQANLPFESKPKH 1084

Query: 367  IPGRKRPLLENRR--AVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERA 424
             P RKR   ++RR   VV+EP ERK+H L Q LQL++ EK+KKRK K+  ++K +EAERA
Sbjct: 1085 TPKRKRLSFDDRRQKGVVVEPRERKIHALVQHLQLMKTEKIKKRKHKEGEKRKVLEAERA 1144

Query: 425  KDEQLTRKRQREERRERYREQDKLMKKIRR 454
            K+E +++KR+REERR++YR QDKL KKIRR
Sbjct: 1145 KEELVSKKRRREERRDKYRTQDKLNKKIRR 1174

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444194|ref|XP_004139860.1| PREDICTED: ribosome biogenesis protein BMS1 homolog [Cucumis sativus]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/454 (74%), Positives = 396/454 (87%), Gaps = 12/454 (2%)

Query: 2    NEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRME 61
            +E +G+ +H          D+MKEEIE RKQ N AEL+++DE  RL++EGF++GTY+R+E
Sbjct: 754  DEANGSDYH----------DKMKEEIEIRKQRNKAELDNIDEAFRLKIEGFQSGTYVRLE 803

Query: 62   IHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGW 121
            +H V  EMVE+FDPC P+LVGGIG GE + GYMQVRLKRHRW+ KKVLK+RDP+I SIGW
Sbjct: 804  VHGVSCEMVEHFDPCQPILVGGIGPGEDDAGYMQVRLKRHRWY-KKVLKTRDPLIFSIGW 862

Query: 122  RRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNN-QASFR 180
            RR+Q+ PVYAIED +GRHRMLKYTPEHMHCLA FWGPLAPP TGV+AVQ LS+N Q SFR
Sbjct: 863  RRYQSTPVYAIEDSNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVIAVQTLSSNIQTSFR 922

Query: 181  IAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGI 240
            IAATA VL+ NHE ++ KKIKLVGYPCKIFKKTALIKDMFTSDLE+A+ EG  VRTVSGI
Sbjct: 923  IAATATVLQSNHEERVVKKIKLVGYPCKIFKKTALIKDMFTSDLEIARFEGASVRTVSGI 982

Query: 241  RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLT 300
            RGQVKKAAKEEIGNQPK+KGG P+EGIARCTFED+I MSDIVF+R W  VE+P+FYNPLT
Sbjct: 983  RGQVKKAAKEEIGNQPKKKGGPPKEGIARCTFEDKIRMSDIVFLRAWTKVEVPKFYNPLT 1042

Query: 301  TALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPF 360
            TALQPRD++WQGMKTVAELR+EHNL IP+NK+SLYKPI R  RKFNPLVIPKSLQAALPF
Sbjct: 1043 TALQPRDRVWQGMKTVAELRKEHNLPIPLNKDSLYKPIERQKRKFNPLVIPKSLQAALPF 1102

Query: 361  ESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIE 420
            +SKPK+ PG++RPLLE RRAVVMEP +RKVH L QQLQL+R+EKMKKRKLK++ ++KE+E
Sbjct: 1103 KSKPKNTPGQQRPLLEKRRAVVMEPRDRKVHALVQQLQLMRHEKMKKRKLKEEKKRKELE 1162

Query: 421  AERAKDEQLTRKRQREERRERYREQDKLMKKIRR 454
            AE AK EQL++KRQREERRERYREQDKL KKIRR
Sbjct: 1163 AEHAKTEQLSKKRQREERRERYREQDKLKKKIRR 1196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848950|ref|XP_002892356.1| hypothetical protein ARALYDRAFT_470695 [Arabidopsis lyrata subsp. lyrata] gi|297338198|gb|EFH68615.1| hypothetical protein ARALYDRAFT_470695 [Arabidopsis lyrata subsp. lyrata]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 316/445 (71%), Positives = 368/445 (82%), Gaps = 8/445 (1%)

Query: 13   QPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEY 72
            Q NE G VD++KEE+E  KQ N  E NDLDE TR+EL GFRTGTYLR+EIH+VP+EMVE+
Sbjct: 712  QANEPGYVDKLKEELEIIKQRNELEYNDLDEETRIELAGFRTGTYLRLEIHNVPYEMVEF 771

Query: 73   FDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAI 132
            FDPCHP+LVGGIG GE NVGYMQ RLKRHRW HKKVLK+RDPIIVSIGWRR+QT+PVYAI
Sbjct: 772  FDPCHPILVGGIGFGEDNVGYMQARLKRHRW-HKKVLKTRDPIIVSIGWRRYQTMPVYAI 830

Query: 133  EDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNH 192
            EDR+GRHRMLKYTPEHMHCLATFWGPL PP TG VA QNLSNNQA FRI AT+VVLEFNH
Sbjct: 831  EDRNGRHRMLKYTPEHMHCLATFWGPLVPPNTGFVAFQNLSNNQAGFRITATSVVLEFNH 890

Query: 193  EVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEI 252
            + +I KKIK+VG PCKI KKTA IKDMFTSDLE+A+ EG  VRTVSGIRGQVKKA K  +
Sbjct: 891  QARIVKKIKMVGTPCKIKKKTAFIKDMFTSDLEIARFEGSSVRTVSGIRGQVKKAGKNML 950

Query: 253  GNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQG 312
             N+ +       EGIARCTFED+I MSD+VF+R W  VE+P+FYNPLTTALQPRDK W G
Sbjct: 951  DNKAE-------EGIARCTFEDQIHMSDMVFLRAWTTVEVPQFYNPLTTALQPRDKTWNG 1003

Query: 313  MKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKR 372
            MKT  ELRRE N+ +PVNK+SLYKPI R P+KF PL IPKSLQ  LPF SKPKDIP RKR
Sbjct: 1004 MKTFVELRRELNIPVPVNKDSLYKPIERKPKKFYPLKIPKSLQKDLPFTSKPKDIPKRKR 1063

Query: 373  PLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRK 432
              ++++RAV+MEP ERK H + QQ QL++N KMKK+K+  Q ++KE EAE+AK+E++ +K
Sbjct: 1064 ASVDDKRAVIMEPKERKEHAIIQQFQLLQNYKMKKKKVTDQKKRKEYEAEKAKNEEINKK 1123

Query: 433  RQREERRERYREQDKLMKKIRRHSE 457
            R+REERR+RYRE+DK  KK RR  +
Sbjct: 1124 RRREERRDRYREEDKQKKKTRRSQD 1148

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7523707|gb|AAF63146.1|AC011001_16 Putative membrane protein [Arabidopsis thaliana]

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 312/453 (68%), Positives = 365/453 (80%), Gaps = 8/453 (1%)

Query: 2    NEKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRME 61
            NE +       +P+E G  D++KE  E  KQ N  E NDLDE TR+EL GFRTGTYLR+E
Sbjct: 691  NENEDEDAEVVEPDEPGYADKLKEAQEITKQRNELEYNDLDEETRIELAGFRTGTYLRLE 750

Query: 62   IHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGW 121
            IH+VP+EMVE+FDPCHP+LVGGIG GE NVGYMQ RLK+HRW HKKVLK+RDPIIVSIGW
Sbjct: 751  IHNVPYEMVEFFDPCHPILVGGIGFGEDNVGYMQARLKKHRW-HKKVLKTRDPIIVSIGW 809

Query: 122  RRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRI 181
            RR+QTIPV+AIEDR+GRHRMLKYTPEHMHCLA+FWGPL PP TG VA QNLSNNQA FRI
Sbjct: 810  RRYQTIPVFAIEDRNGRHRMLKYTPEHMHCLASFWGPLVPPNTGFVAFQNLSNNQAGFRI 869

Query: 182  AATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIR 241
             AT+VVLEFNH+ +I KKIKLVG PCKI KKTA IKDMFTSDLE+A+ EG  VRTVSGIR
Sbjct: 870  TATSVVLEFNHQARIVKKIKLVGTPCKIKKKTAFIKDMFTSDLEIARFEGSSVRTVSGIR 929

Query: 242  GQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTT 301
            GQVKKA K  + N+ +       EGIARCTFED+I MSD+VF+R W  VE+P+FYNPLTT
Sbjct: 930  GQVKKAGKNMLDNKAE-------EGIARCTFEDQIHMSDMVFLRAWTTVEVPQFYNPLTT 982

Query: 302  ALQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFE 361
            ALQPRDK W GMKT  ELRRE N+ IPVNK+SLYK I R  +KFNPL IPK L+  LPF 
Sbjct: 983  ALQPRDKTWNGMKTFGELRRELNIPIPVNKDSLYKAIERKQKKFNPLQIPKRLEKDLPFM 1042

Query: 362  SKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEA 421
            SKPK+IP RKRP LE++RAV+MEP ERK H + QQ QL+++  MKK+K   Q ++KE EA
Sbjct: 1043 SKPKNIPKRKRPSLEDKRAVIMEPKERKEHTIIQQFQLLQHHTMKKKKATDQKKRKEYEA 1102

Query: 422  ERAKDEQLTRKRQREERRERYREQDKLMKKIRR 454
            E+AK+E++ +KR+REERR+RYRE+DK  KK RR
Sbjct: 1103 EKAKNEEINKKRRREERRDRYREEDKQKKKTRR 1135

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	458
TAIR|locus:2033050	1147	AT1G06720 [Arabidopsis thalian	0.967	0.386	0.652	1.5e-154
UNIPROTKB|F1NH69	1304	BMS1 "Uncharacterized protein"	0.803	0.282	0.532	4.4e-107
UNIPROTKB|E1BPP2	1290	BMS1 "Uncharacterized protein"	0.805	0.286	0.544	1.9e-106
UNIPROTKB|Q14692	1282	BMS1 "Ribosome biogenesis prot	0.805	0.287	0.533	4.6e-105
UNIPROTKB|F1PKN2	1287	BMS1 "Uncharacterized protein"	0.805	0.286	0.536	5.8e-105
ZFIN|ZDB-GENE-060720-2	1221	bms1l "BMS1-like, ribosome ass	0.799	0.299	0.524	7.3e-105
UNIPROTKB|F1RG23	399	BMS1 "Uncharacterized protein"	0.727	0.834	0.551	3.2e-97
RGD|1308043	392	Bms1 "BMS1 homolog, ribosome a	0.718	0.839	0.546	5.3e-95
DICTYBASE|DDB_G0287891	1205	bms1l "BMS1-like ribosome biog	0.836	0.317	0.476	1.1e-94
ASPGD|ASPL0000005995	1179	AN6334 [Emericella nidulans (t	0.847	0.329	0.472	4.8e-94

TAIR|locus:2033050 AT1G06720 [Arabidopsis thaliana (taxid:3702)]

 Score = 1507 (535.5 bits), Expect = 1.5e-154, P = 1.5e-154
 Identities = 295/452 (65%), Positives = 338/452 (74%)

Query:     3 EKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEI 62
             E+DG      Q +E G  D++KE  E  KQ N  E NDLDE TR+EL GFRTGTYLR+EI
Sbjct:   702 ERDGNNPR-SQADEPGYADKLKEAQEITKQRNELEYNDLDEETRIELAGFRTGTYLRLEI 760

Query:    63 HDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWR 122
             H+VP+EMVE+FDPCHP+LVGGIG GE NVGYMQ RLK+HRW HKKVLK+RDPIIVSIGWR
Sbjct:   761 HNVPYEMVEFFDPCHPILVGGIGFGEDNVGYMQARLKKHRW-HKKVLKTRDPIIVSIGWR 819

Query:   123 RFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIA 182
             R+QTIPV+AIEDR+GRHRMLKYTPEHMHCLA+FWGPL PP TG VA QNLSNNQA FRI 
Sbjct:   820 RYQTIPVFAIEDRNGRHRMLKYTPEHMHCLASFWGPLVPPNTGFVAFQNLSNNQAGFRIT 879

Query:   183 ATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRG 242
             AT+VVLEFNH+ +I KKIKLVG PCKI KKTA IKDMFTSDLE+A+ EG  VRTVSGIRG
Sbjct:   880 ATSVVLEFNHQARIVKKIKLVGTPCKIKKKTAFIKDMFTSDLEIARFEGSSVRTVSGIRG 939

Query:   243 QVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTA 302
             QVKKA K  + N+ +       EGIARCTFED+I MSD+VF+R W  VE+P+FYNPLTTA
Sbjct:   940 QVKKAGKNMLDNKAE-------EGIARCTFEDQIHMSDMVFLRAWTTVEVPQFYNPLTTA 992

Query:   303 LQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFES 362
             LQPRDK W GMKT  ELRRE N+ IPVNK+SLYK I R  +KFNPL IPK L+  LPF S
Sbjct:   993 LQPRDKTWNGMKTFGELRRELNIPIPVNKDSLYKAIERKQKKFNPLQIPKRLEKDLPFMS 1052

Query:   363 KPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEXXXXXXXXXXXXXXEIEAE 422
             KPK+IP RKRP LE++RAV+MEP ERK H + QQ QL+++               E EAE
Sbjct:  1053 KPKNIPKRKRPSLEDKRAVIMEPKERKEHTIIQQFQLLQHHTMKKKKATDQKKRKEYEAE 1112

Query:   423 RAKDXXXXXXXXXXXXXXXXXXXDKLMKKIRR 454
             +AK+                   DK  KK RR
Sbjct:  1113 KAKNEEINKKRRREERRDRYREEDKQKKKTRR 1144

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

UNIPROTKB|F1NH69 BMS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 205/385 (53%), Positives = 273/385 (70%)

Query:    21 DQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVL 80
             D +KEE+  + Q+N  E  D D+ TR++ EGFR G Y+R+EI +VP E V  FDP +P++
Sbjct:   869 DDLKEEMHKQAQLNKTEFEDQDDETRVQYEGFRPGMYVRIEIENVPCEFVLNFDPHYPII 928

Query:    81 VGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHR 140
             +GG+G  E NVGY+Q+RLK+HRW+ KK+LK+RDP+I+S GWRRFQTIPV+ IED +GRHR
Sbjct:   929 LGGLGNSEGNVGYVQLRLKKHRWY-KKILKTRDPLILSFGWRRFQTIPVFYIEDHNGRHR 987

Query:   141 MLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKI 200
             +LKYTP+HMHC ATFWGP+ P  TG +AVQ++S     FRIAAT VVL+ +  + + KK+
Sbjct:   988 LLKYTPQHMHCGATFWGPITPQGTGFLAVQSVSGTTPDFRIAATGVVLDLDKSITVVKKL 1047

Query:   201 KLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKG 260
             KL G+P KIFK T+ IK MF S LEVA+ EG  +RTVSGIRGQ+KKA +           
Sbjct:  1048 KLTGFPFKIFKNTSFIKGMFNSQLEVAKFEGAAIRTVSGIRGQIKKALRA---------- 1097

Query:   261 GQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDK--IWQGMKTVAE 318
               P  G  R TFED++LMSDIVF+R W  V IP+FYNP+T+ L+P  +   W+GM+T  +
Sbjct:  1098 --PA-GAFRATFEDKLLMSDIVFVRTWYPVSIPKFYNPVTSLLKPAGEKDSWKGMRTTGQ 1154

Query:   319 LRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGR-KRPLLEN 377
             LR +  + +  NK+SLYKPI R  R FN L IPK+LQ ALPF++KPK++  + K P  + 
Sbjct:  1155 LRHDQGIKLKQNKDSLYKPIVREKRHFNKLHIPKALQKALPFKNKPKNLEKKGKTPKDQW 1214

Query:   378 RRAVVMEPHERKVHVLFQQLQLIRN 402
             R AV+MEPHE+K+  L   L  + N
Sbjct:  1215 RPAVIMEPHEKKISALLNALSTVNN 1239

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BPP2 BMS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 210/386 (54%), Positives = 270/386 (69%)

Query:    21 DQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVL 80
             D +K E++ + Q+N AE  D ++  R++ EGFR G Y+R+EI +VP E V  FDP +P++
Sbjct:   857 DDLKGEMQKQAQLNRAEFEDQEDEARVQYEGFRPGMYVRIEIENVPCEFVLNFDPHYPII 916

Query:    81 VGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHR 140
             +GG+G  E NVGY+Q+RLK+HRW+ KK+LKSRDPII S+GWRRFQTIP+Y IED +GR R
Sbjct:   917 LGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQR 975

Query:   141 MLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKI 200
             +LKYTP+HMHC ATFWGP+ P  TG +AVQ++S +   FRIAAT VVL+ +  +KI KK+
Sbjct:   976 LLKYTPQHMHCGATFWGPITPQGTGFLAVQSVSGSMPDFRIAATGVVLDLDKSIKIVKKL 1035

Query:   201 KLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKG 260
             KL G+P KIFK T+ IK MF S LEVA+ EG  +RTVSGIRGQ+KKA +           
Sbjct:  1036 KLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRA---------- 1085

Query:   261 GQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQP-RDK-IWQGMKTVAE 318
               P EG  R TFED++LMSDIVFMR W  V IP FYNP+T+ L+P  +K  W GM+T  +
Sbjct:  1086 --P-EGAFRATFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQ 1142

Query:   319 LRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPK-DIPGRKRPLLEN 377
             LR  H + +  NK+SLYKPI R  + FN L IPK+LQ ALPF+SKPK      K P    
Sbjct:  1143 LRLAHGIKLKANKDSLYKPIVRQKKHFNSLHIPKALQKALPFKSKPKTQAKAGKTPKDRV 1202

Query:   378 RRAVVMEPHERKVHVLFQQLQLIRNE 403
             R AV+ EPHERK+  L   L  + +E
Sbjct:  1203 RPAVIREPHERKILALLDALSTVHSE 1228

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|Q14692 BMS1 "Ribosome biogenesis protein BMS1 homolog" [Homo sapiens (taxid:9606)]

 Score = 1040 (371.2 bits), Expect = 4.6e-105, P = 4.6e-105
 Identities = 206/386 (53%), Positives = 269/386 (69%)

Query:    21 DQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVL 80
             D +K E++ + Q+N AE  D D+  R++ EGFR G Y+R+EI +VP E V+ FDP +P++
Sbjct:   849 DDLKGEMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPII 908

Query:    81 VGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHR 140
             +GG+G  E NVGY+Q+RLK+HRW+ KK+LKSRDPII S+GWRRFQTIP+Y IED +GR R
Sbjct:   909 LGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQR 967

Query:   141 MLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKI 200
             +LKYTP+HMHC A FWGP+ P  TG +A+Q++S     FRIAAT VVL+ +  +KI KK+
Sbjct:   968 LLKYTPQHMHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKL 1027

Query:   201 KLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKG 260
             KL G+P KIFK T+ IK MF S LEVA+ EG  +RTVSGIRGQ+KKA +           
Sbjct:  1028 KLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRA---------- 1077

Query:   261 GQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQP-RDK-IWQGMKTVAE 318
               P EG  R +FED++LMSDIVFMR W  V IP FYNP+T+ L+P  +K  W GM+T  +
Sbjct:  1078 --P-EGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQ 1134

Query:   319 LRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPK-DIPGRKRPLLEN 377
             LR  H + +  NK+SLYKPI R  + FN L IPK+LQ ALPF++KPK      K P    
Sbjct:  1135 LRLAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRR 1194

Query:   378 RRAVVMEPHERKVHVLFQQLQLIRNE 403
             R AV+ EPHERK+  L   L  + ++
Sbjct:  1195 RPAVIREPHERKILALLDALSTVHSQ 1220

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISS;IDA

GO:0042255 "ribosome assembly" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1PKN2 BMS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 207/386 (53%), Positives = 269/386 (69%)

Query:    21 DQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVL 80
             D +K E+  + Q+N AE  D D+  R++ EGFR G Y+R+EI +VP E V  FDP +P++
Sbjct:   854 DDLKGEMHKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVLNFDPHYPII 913

Query:    81 VGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHR 140
             +GG+G  E NVGY+Q+RLK+HRW+ KK+LKSRDPII S+GWRRFQTIP+Y IED +GR R
Sbjct:   914 LGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQR 972

Query:   141 MLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKI 200
             +LKYTP+HMHC ATFWGP+ P  TG +AVQ++S+    FRIAAT V+L+ +  +KI KK+
Sbjct:   973 LLKYTPQHMHCGATFWGPITPQGTGFLAVQSVSDIMPDFRIAATGVILDLDKSIKIVKKL 1032

Query:   201 KLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKG 260
             KL G+P KIFK T+ IK MF S LEVA+ EG  +RTVSGIRGQ+KKA +           
Sbjct:  1033 KLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRA---------- 1082

Query:   261 GQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQP-RDK-IWQGMKTVAE 318
               P EG  R +FED++LMSDIVFMR W  V IP FYNP+T+ L+P  +K  W GM+T  +
Sbjct:  1083 --P-EGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQ 1139

Query:   319 LRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPK-DIPGRKRPLLEN 377
             LR  H + +  NK+SLYKPI R  + FN L IPK+LQ ALPF++KPK      K P    
Sbjct:  1140 LRLAHGVKLKPNKDSLYKPIVRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKIPKDRR 1199

Query:   378 RRAVVMEPHERKVHVLFQQLQLIRNE 403
             R AV+ EPHERK+  L   L  + ++
Sbjct:  1200 RPAVIREPHERKILALLDALSTVHSQ 1225

GO:0005634 "nucleus" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

ZFIN|ZDB-GENE-060720-2 bms1l "BMS1-like, ribosome assembly protein (yeast)" [Danio rerio (taxid:7955)]

 Score = 1021 (364.5 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
 Identities = 201/383 (52%), Positives = 265/383 (69%)

Query:    21 DQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVL 80
             D +KEE++ + ++N  E  D+D+  R++ EGFR G Y+R+EI  VP E V  FDP +P +
Sbjct:   789 DDLKEEMQKQAELNRQEFEDVDDEIRVQYEGFRPGMYVRVEIPAVPCEFVTNFDPHYPTI 848

Query:    81 VGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHR 140
             +GG+G  E NVGY+Q+RLK+HRW H ++LK+RDP+I+S+GWRRFQTIP+Y IED +GRHR
Sbjct:   849 LGGLGASEGNVGYLQMRLKKHRW-HNRILKTRDPLILSLGWRRFQTIPLYYIEDHNGRHR 907

Query:   141 MLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKI 200
             +LKYTPEHMHC AT WGP+ P  TG +AVQ +   +A+FRIAAT VVL+ +  V I KK+
Sbjct:   908 LLKYTPEHMHCGATIWGPITPQGTGFLAVQTIGGVKANFRIAATGVVLDLDKSVSIVKKL 967

Query:   201 KLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKG 260
             KL+GYP KIFK T  I+ MF + LEVA+ EG  +RTVSGI+GQ+KKA +      P    
Sbjct:   968 KLIGYPYKIFKNTCFIQGMFNTILEVAKFEGASIRTVSGIKGQIKKALRT-----P---- 1018

Query:   261 GQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQP--RDKIWQGMKTVAE 318
               P  G  R TFEDR+LMSDIVF+R W  V +PR YNP+T+ L P  +   W GM+T+ +
Sbjct:  1019 --P--GAFRATFEDRLLMSDIVFLRSWYPVSVPRLYNPVTSLLMPVGQKHTWSGMRTLGQ 1074

Query:   319 LRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGR-KRPLLEN 377
             L+ +  +     ++SLYKPI R  R FNPL IPK LQ ALPF+SKPK +  + K P    
Sbjct:  1075 LKHDLGIHNKPKQDSLYKPIERQVRHFNPLRIPKELQKALPFKSKPKYMQSKGKTPRDLQ 1134

Query:   378 RRAVVMEPHERKVHVLFQQLQLI 400
             R AV+ EPHE+KV  L   L  +
Sbjct:  1135 RPAVIREPHEKKVAALLDALTTV 1157

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1RG23 BMS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 193/350 (55%), Positives = 246/350 (70%)

Query:    57 YLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPII 116
             Y+R+EI +VP E V  FDP +P+++GG+G  E NVGY+Q+RLK+HRW+ KK+LKSRDPII
Sbjct:     2 YVRIEIENVPCEFVLNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWY-KKILKSRDPII 60

Query:   117 VSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQ 176
              S+GWRRFQTIP+Y IED +GR R+LKYTP+HMHC ATFWGP+ P  TG +A+Q++S   
Sbjct:    61 FSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGATFWGPITPQGTGFLAIQSVSGIM 120

Query:   177 ASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRT 236
               FRIAAT VVL+ +  +KI KK+KL G+P KIFK T+ IK MF S LEVA+ EG  +RT
Sbjct:   121 PDFRIAATGVVLDLDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVARFEGAVIRT 180

Query:   237 VSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFY 296
             VSGIRGQ+KKA +             P EG  R TFED++LMSDIVFMR W  V +P FY
Sbjct:   181 VSGIRGQIKKALRA------------P-EGAFRATFEDKLLMSDIVFMRTWYPVSVPAFY 227

Query:   297 NPLTTALQP-RDK-IWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSL 354
             NP+T+ L+P  +K  W GM+T  +LR  H + +  NK+SLYKPI R  + FN L IPK+L
Sbjct:   228 NPVTSLLKPVGEKDTWSGMRTTGQLRLVHGIKLKPNKDSLYKPIIRQKKHFNSLHIPKAL 287

Query:   355 QAALPFESKPK-DIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNE 403
             Q ALPF+SKPK      K P    R AV+ EPHERK+  L   L  + ++
Sbjct:   288 QKALPFKSKPKTQAKAGKTPKDRLRPAVIREPHERKILALLDALSTVHSQ 337

GO:0005634 "nucleus" evidence=IEA

RGD|1308043 Bms1 "BMS1 homolog, ribosome assembly protein (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
 Identities = 189/346 (54%), Positives = 241/346 (69%)

Query:    61 EIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIG 120
             EI ++P E V+ FDP +P+++GG+G  E  VGY+Q+RLK+HRW+ KK+LKSRDP+I S+G
Sbjct:     1 EIENIPCEFVQNFDPHYPIILGGLGNSEGTVGYVQMRLKKHRWY-KKILKSRDPVIFSVG 59

Query:   121 WRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFR 180
             WRRFQTIP+Y IED +GR R+LKYTP+HMHC ATFWGP+ P  TG +A+Q++S     FR
Sbjct:    60 WRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGATFWGPITPQGTGFLAIQSVSGAMPEFR 119

Query:   181 IAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGI 240
             IAAT VVL+ +  +KI KK+KL G+P KIFK T+ IK MF S LEVA+ EG  +RTVSGI
Sbjct:   120 IAATGVVLDLDKSIKIVKKLKLTGFPFKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGI 179

Query:   241 RGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLT 300
             RGQ+KKA +             P EG  R +FED++LMSDIVFMR W  V IP FYNP+T
Sbjct:   180 RGQIKKALRA------------P-EGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVT 226

Query:   301 TALQP-RDK-IWQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAAL 358
             + L+P  +K  W GM+T  +LR  H + +  NK+SLYKPI R  + FN L IPK+LQ AL
Sbjct:   227 SLLKPVGEKDTWSGMRTTHQLRLAHGIKLKPNKDSLYKPILRQKKHFNSLHIPKALQKAL 286

Query:   359 PFESKPK-DIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNE 403
             PF++KPK      K P    R AV+ EPHERKV  L   L  I  +
Sbjct:   287 PFKNKPKTQAKAGKVPRDRQRPAVIREPHERKVLALLDALSTIHGQ 332

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

DICTYBASE|DDB_G0287891 bms1l "BMS1-like ribosome biogenesis protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 193/405 (47%), Positives = 266/405 (65%)

Query:     3 EKDGAKFHCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEI 62
             EK  AK+   Q NE     ++ EE++ ++ +N  E  + D+  R + EGF  G Y+R+E 
Sbjct:   765 EKINAKY---QENEKDFQGELNEEVKRQRAINEKEFENDDQFYRQKYEGFPIGVYVRIEF 821

Query:    63 HDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWR 122
               +P E  EYFDP  PV+VGG+   E+N+G + V LK+HRW HK++LKS DP+++S+GWR
Sbjct:   822 EKIPCEFSEYFDPKFPVVVGGLLSSEENLGMINVSLKKHRW-HKRILKSNDPLMISVGWR 880

Query:   123 RFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIA 182
             RFQTI +Y+ +D +GR+RMLKYTPEHMHC A+F+GPL PP TG +   N +NNQA FR++
Sbjct:   881 RFQTIVLYSTKDINGRNRMLKYTPEHMHCHASFYGPLTPPGTGFIGFTNANNNQAGFRVS 940

Query:   183 ATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRG 242
             AT  VL+ +  + + KK+KL+G P KI KKT  +  MFTS LEVA+  G  +RTVSGIRG
Sbjct:   941 ATGTVLDLDSSINVVKKLKLIGQPDKIMKKTCFVNGMFTSRLEVAKFVGATIRTVSGIRG 1000

Query:   243 QVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTA 302
             Q+KK       + P        EG  R TFEDR+L SDI+F+R W  +   RFYNP+T+ 
Sbjct:  1001 QIKKPL-----SHP--------EGSFRATFEDRLLPSDIIFLRTWYTITPTRFYNPVTSL 1047

Query:   303 LQPRDKIWQGMKTVAELRREHNLSIPVNKNSLYK-PIGRTPRKFNPLVIPKSLQAALPFE 361
             LQ +   W+GMKTV +LR E+NLS PV K+S Y+  I R  +KF  L IP  LQ+ LPF+
Sbjct:  1048 LQEKKTHWEGMKTVGQLRFENNLSAPVKKDSSYQGKIERDEKKFKELRIPNKLQSQLPFD 1107

Query:   362 SKPKD---IPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNE 403
              KPK    I      LL +R  ++ EPHE++V  L ++L+ I+N+
Sbjct:  1108 LKPKGTKIIKNADDALLSSRVNII-EPHEKQVADLMRRLESIKNK 1151

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0042255 "ribosome assembly" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000005995 AN6334 [Emericella nidulans (taxid:162425)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 194/411 (47%), Positives = 256/411 (62%)

Query:     2 NEKDGAKFHCGQPNE-IG---LVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTY 57
             N KD ++    +P E  G     D  K +++ +  +N AE   LD  +R   EG+R GTY
Sbjct:   723 NSKDNSRHDGAEPEEEFGEDEWYDAQKAKMQKQADINRAEFEALDPNSRARAEGYRAGTY 782

Query:    58 LRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIV 117
              R+ +  VP E    F+P +PV+VGG+   E   GY+QVR+KRHRW HKK+LKS DP+I 
Sbjct:   783 ARIVLERVPCEFSTKFNPRYPVIVGGLAPTEDRFGYVQVRIKRHRW-HKKILKSNDPLIF 841

Query:   118 SIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQA 177
             S+GWRRFQT+P+Y+  D   R+RMLKYTPEHMHC  TF+GPL  P TG   VQ+ SN   
Sbjct:   842 SLGWRRFQTLPMYSTSDNRTRNRMLKYTPEHMHCFGTFYGPLVAPNTGFCCVQSFSNKNP 901

Query:   178 SFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTV 237
              FRIAAT VVL  +   +I KK+KL G   KIFK TA IKDMF S LE+A+ EG  +RTV
Sbjct:   902 GFRIAATGVVLSVDEHTEIVKKLKLTGVAYKIFKNTAFIKDMFNSSLEIAKFEGAAIRTV 961

Query:   238 SGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYN 297
             SGIRGQ+K+A      ++P        +G  R TFED+ILMSDIVF+R W  ++  RFYN
Sbjct:   962 SGIRGQIKRAL-----SKP--------DGCFRATFEDKILMSDIVFLRAWYPIKPHRFYN 1008

Query:   298 PLTTALQPRDKI-----WQGMKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPK 352
             P+T  L   + +     W+GM+   E+RRE  +  P+NK+S Y+ I R  R FNPL +P+
Sbjct:  1009 PVTNLLDIEEGLSGDGGWKGMRLTGEVRREQGIPTPLNKDSAYRKIERPERHFNPLRVPR 1068

Query:   353 SLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNE 403
              L A LPF+S+   +  RK      +RAVV+   E+K   L Q+L  +RNE
Sbjct:  1069 QLAAELPFKSQITRMKSRKDKTYLQKRAVVLGGEEKKARDLMQKLNTLRNE 1119

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005819 "spindle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•	•		•		0.939
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)				•	•		•		0.934
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•	•		•		0.929
	GSVIVG00000661001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa)				•	•		•		0.921
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)				•	•		•		0.917
	GSVIVG00000597001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa)				•	•		•		0.915
	GSVIVG00037695001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)				•	•		•		0.900
	GSVIVG00021349001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (905 aa)				•	•		•		0.892
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•	•		•		0.888
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•	•		•		0.883

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	458
COG5192	1077	COG5192, BMS1, GTP-binding protein required for 40	1e-106
pfam04950	293	pfam04950, DUF663, Protein of unknown function (DU	6e-80
COG5177	769	COG5177, COG5177, Uncharacterized conserved protei	6e-12
pfam09805	134	pfam09805, Nop25, Nucleolar protein 12 (25kDa)	0.001

>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

 Score =  339 bits (871), Expect = e-106
 Identities = 146/442 (33%), Positives = 242/442 (54%), Gaps = 30/442 (6%)

Query: 13   QPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEY 72
            +  ++    + K +IE + ++N +E   +   +R+ +EG+R G Y+R+ +  VP E V+ 
Sbjct: 666  EKKDVDWYTEEKRKIEEQLKINRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDE 725

Query: 73   FDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAI 132
            F+  +P+++GG+   E+ +G +Q R+KRHRW HKK+LK+ DP+I S+GWRRFQ+IPVY++
Sbjct: 726  FNSRYPIVLGGLLPAEKEMGIVQGRIKRHRW-HKKILKTNDPLIFSVGWRRFQSIPVYSM 784

Query: 133  EDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNH 192
            +D   R+RMLKYTPEHMHC  +F+GP+ PP TG  AVQ+   +   FR+ A   + + N 
Sbjct: 785  KDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSEKGD---FRVLALGTITDVNG 841

Query: 193  EVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEI 252
            + K+ KK+KLVGYP +I + T  ++DMFTSDLEV + EG  ++ VSG+RGQVK       
Sbjct: 842  DAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGP----- 896

Query: 253  GNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQG 312
                       + G  R  FE ++LMSDI+ +R +  VE+ R + P+   L      W+G
Sbjct: 897  ---------HGKNGEYRAVFEGKMLMSDIITLRCFVPVEVHRIFIPVDNLLGK----WRG 943

Query: 313  MKTVAELRREHNLSIPVNKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKR 372
            ++ + E+R    L+      +                +P+ +++ LP + +   +     
Sbjct: 944  LRRLHEIRESLGLTHSYAPQNDSSSEEMGYGAEEDYSLPREIESKLPLDKRSIAVVS--- 1000

Query: 373  PLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKDEQLTRK 432
                 RR  +  P E +     +   +    K ++ K + +  ++  E E  K E+   +
Sbjct: 1001 -----RRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQ 1055

Query: 433  RQREERRERYREQDKLMKKIRR 454
            R R+   + Y+E  K   K +R
Sbjct: 1056 RIRKTIHDNYKEMAKKRLKKKR 1077

Length = 1077

>gnl|CDD|218343 pfam04950, DUF663, Protein of unknown function (DUF663)

 Score =  249 bits (637), Expect = 6e-80
 Identities = 86/242 (35%), Positives = 142/242 (58%), Gaps = 15/242 (6%)

Query: 46  RLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWH 105
              +EG + G Y+R+EI +VP E+ E F+    ++V G+   E  +  +  ++K+HRW +
Sbjct: 64  EKRIEGVKPGWYVRLEIKNVPKELAENFNSKQLIIVFGLLPHEHKMSVVNFKIKKHRW-Y 122

Query: 106 KKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTG 165
           KK LKS++P+I+ +G+RRFQ+ P+Y+    + +H+  +Y P H  C ATF+GP+  P + 
Sbjct: 123 KKPLKSKEPLIIQVGFRRFQSQPIYSQNTSNDKHKYERYLPPHKTCNATFYGPITFPNSP 182

Query: 166 VVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLE 225
           ++A +   ++   FRIAAT  +LE +    I KK+KL G+P KIFKKTA ++ MF +  +
Sbjct: 183 LLAFKKSFSDTNGFRIAATGCILECDPNRIIAKKLKLTGHPYKIFKKTAFVRYMFFNPED 242

Query: 226 VAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMR 285
           V   +   + T SG RG +K+A    +G            G  + TF+ ++ M DIV M+
Sbjct: 243 VEWFKPVPLFTKSGRRGHIKEA----LGT----------HGYFKATFDGKLNMQDIVIMK 288

Query: 286 GW 287
            +
Sbjct: 289 LY 290

This family contains several uncharacterized eukaryotic proteins. Length = 293

>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown]

 Score = 67.4 bits (164), Expect = 6e-12
 Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 19/233 (8%)

Query: 55  GTYLRMEIHDVPFEMVEYF-DPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRD 113
           G  +R+++   P  + E   +P   ++V G+   E         L+RH  +   + KS +
Sbjct: 536 GQMVRIKLR-FPKFLYEGLIEPQILLVVYGLLEYEDKKTVHNFSLQRHFEYEVPL-KSEE 593

Query: 114 PIIVSIGWRRFQTIPVYAIEDRSGR--HRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQN 171
            ++V +G RR    P+ +    S     +  +        +A+F GP++   + V+  + 
Sbjct: 594 SMVVQLGHRRVDICPLISKGSNSPNNNQKYFRRLKPLESGVASFIGPISFGLSPVIIFKK 653

Query: 172 LSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEG 231
            + ++ S  + A+  +  F+ +  I K+  L G+P K  K+   ++ MF S  +V   + 
Sbjct: 654 SALDELSATLLASGGMNNFDGDRVIAKRAVLTGHPFKNHKRYVTVRYMFFSPEDVMWFKN 713

Query: 232 KEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM 284
            ++ T  G  G +    KE +G            G  + TF  +I   D V M
Sbjct: 714 IQLFTKRGRTGFI----KEPLGTH----------GYFKATFSGKIKSQDKVAM 752

Length = 769

>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa)

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 407 KRKLKQQHRKKEIEAERAKDEQL-TRKRQREERRERYREQDKLMKKIRRHSE 457
           KRK +++ + +E   E+ ++E++  RKR REER++   +Q K  K+  +  E
Sbjct: 29  KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLE 80

Members of this family of proteins are part of the yeast nuclear pore complex-associated pre-60S ribosomal subunit. The family functions as a highly conserved exonuclease that is required for the 5'-end maturation of 5.8S and 25S rRNAs, demonstrating that 5'-end processing also has a redundant pathway. Nop25 binds late pre-60S ribosomes, accompanying them from the nucleolus to the nuclear periphery; and there is evidence for both physical and functional links between late 60S subunit processing and export. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	458
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	100.0
PF04950	297	DUF663: Protein of unknown function (DUF663); Inte	100.0
KOG1980	754	consensus Uncharacterized conserved protein [Funct	100.0
COG5177	769	Uncharacterized conserved protein [Function unknow	100.0
KOG1951	115	consensus GTP-binding protein AARP2 involved in 40	99.54
KOG0461	522	consensus Selenocysteine-specific elongation facto	95.6
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	88.41

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-111  Score=883.19  Aligned_cols=415  Identities=35%  Similarity=0.637  Sum_probs=401.3

Q ss_pred             CCCCCCccchHHHHHHHHHHHHHhhHHHhcCCCHHHHHhhcCCCCCcEEEEEEcccchhhhhccCCCCcEEEEecccccc
Q 012675           10 HCGQPNEIGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQ   89 (458)
Q Consensus        10 ~~~~~~~~~~~~~~k~~~~~q~~~n~~ef~~~d~~~r~~~eG~~~G~YVrI~i~~vP~e~~~~fdp~~PlIvggLl~~E~   89 (458)
                      ++++..+.+||+..|+.+++|+.+|++||++|++++|+.+|||++|.||||+|+.||.+|+++|++.+|+|+|||||.|.
T Consensus       663 ~d~e~~d~dwy~~eK~ki~~ql~inr~e~e~M~Pe~r~~Ieg~raG~YVriv~~~vP~efv~~fn~r~piV~GGlLp~E~  742 (1077)
T COG5192         663 GDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESRVVIEGYRAGRYVRIVLSHVPLEFVDEFNSRYPIVLGGLLPAEK  742 (1077)
T ss_pred             cCccccccchHHHHHHHHHHHHhhhhhhhhhcCCcceeEeecccccceEEEEeccCCHHHHhhcCCCCcEEeccccchhh
Confidence            34555677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeeeeeeeecCCcceeEEeecCCCceEEEEEEeecCCCCceEEEE
Q 012675           90 NVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAV  169 (458)
Q Consensus        90 k~~vv~~rikrhrw~~~kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n~R~r~lKytp~~~~c~AtfyGPi~~~~tgvlaf  169 (458)
                      ++|+||++|+|||| |++|||++||||||+|||||||+||||+.|+.+|+|||||||+||||.+|||||+++|||||||+
T Consensus       743 ~~giVq~rikrhrW-hKKILKTNdPlifS~GWRRFQsiPvys~~DsrTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~V  821 (1077)
T COG5192         743 EMGIVQGRIKRHRW-HKKILKTNDPLIFSVGWRRFQSIPVYSMKDSRTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAV  821 (1077)
T ss_pred             hhhhhhhHHHHhHH-HHHHhccCCCeEEEechhhhcccceeeecchhhhhhhhhcCccceeeeeeeecCccCCCCCceeE
Confidence            99999999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCeEEEEEEEEeeccCceeEEEeEEEeeeeeEEeecceEEeccCCChhhhccccCCeeeecccccceeecccc
Q 012675          170 QNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAK  249 (458)
Q Consensus       170 ~~~~~~~~~fri~atG~vl~~d~~~~IvKKlkLtG~P~KI~K~tAfIk~MF~s~lEV~~Fkga~L~TvsGiRG~IKkalg  249 (458)
                      |+.   .++|||+|+|+|.++|.+..|||||+|+|||++|++||||||+||+|++||++|+||+|+||||+||+||.|+|
T Consensus       822 qse---~g~frv~a~g~i~dv~~~~~lvkklklvg~p~qi~qnt~fvrdmfts~lev~kfega~lk~vsglrgqvk~~~~  898 (1077)
T COG5192         822 QSE---KGDFRVLALGTITDVNGDAKLVKKLKLVGYPKQIVQNTVFVRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPHG  898 (1077)
T ss_pred             Eec---CCceEEEEeeeeEeccccHHHHhhhhhccCcHHHhhhhHhHHHhhhhhhHHHhhcccceeeeccccccccCccC
Confidence            984   46799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCeeEEEEeccccccccEEEEeceeecccCcccccccccCCCCCccccccccHHHHHHHcCCCCCC
Q 012675          250 EEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIPRFYNPLTTALQPRDKIWQGMKTVAELRREHNLSIPV  329 (458)
Q Consensus       250 t~~~~~~~~~~~~~p~G~fRatFedkI~~sDiVflrlwkrV~p~~fy~pv~~~l~~~~~~W~gmrt~~elR~e~~~~~p~  329 (458)
                      .              +|++||.|||+|+|||||.||+|++|.+.+||+||+|||+    .|+|+|.++|||...||.+|.
T Consensus       899 k--------------~g~yra~fe~kmlmsdii~lr~~~pv~v~r~~~pv~~ll~----~wrglr~~~eir~sl~l~~~~  960 (1077)
T COG5192         899 K--------------NGEYRAVFEGKMLMSDIITLRCFVPVEVHRIFIPVDNLLG----KWRGLRRLHEIRESLGLTHSY  960 (1077)
T ss_pred             C--------------CccchheeccchhhhheeeEEeeeeeEEEEeeccHHHHHH----HHhhhHHHHHHHHHhCCCCCC
Confidence            8              9999999999999999999999999999999999999996    599999999999999999999


Q ss_pred             CCCCCCcccCCCCCCCCCCCCChhhHhhCCCCCCCCCCCCCCCccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 012675          330 NKNSLYKPIGRTPRKFNPLVIPKSLQAALPFESKPKDIPGRKRPLLENRRAVVMEPHERKVHVLFQQLQLIRNEKMKKRK  409 (458)
Q Consensus       330 ~~dS~Y~~i~r~~r~f~~l~iPk~lq~~LPf~~kpk~~~~~~~~~~~~~ravv~~~~ekk~~~l~~~l~ti~~~k~~k~~  409 (458)
                      ++||.|-.+||-.++||.+.+|+++|+.|||+        +++.+++.+|++++-|.|.+....+|..-++-+-|..+++
T Consensus       961 ~p~~~~~~~e~~~~~~~~~~~pr~ie~~lp~~--------kr~~~~~srr~~~~~~~e~r~k~~ik~~i~~~r~kd~~~k 1032 (1077)
T COG5192         961 APQNDSSSEEMGYGAEEDYSLPREIESKLPLD--------KRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEK 1032 (1077)
T ss_pred             CCCccchhhhhhccccccccCcHhHHhhCCcc--------hhhhhheeeeeeccCChhhhHHHHHHHHHHHHHhcchHHH
Confidence            99999999999999999999999999999999        3455789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012675          410 LKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRR  454 (458)
Q Consensus       410 ~k~~~~~~~~~~~~~k~e~~~~~~~k~~~k~~~r~~~k~~~~~~~  454 (458)
                      ++++..++++.++.+|.|+++.+|.++.+++.|.+.+|++-+|.+
T Consensus      1033 e~~~s~~r~k~~~i~k~e~er~qr~r~~~~d~~~e~~kkr~kk~r 1077 (1077)
T COG5192        1033 ERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077 (1077)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence            999999999999999999999999999999999999999766643

>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus

Probab=100.00  E-value=4.6e-95  Score=721.97  Aligned_cols=256  Identities=47%  Similarity=0.783  Sum_probs=79.5

Q ss_pred             cchHHHHHHHHHHHHHhhHHHhcCCCHHHHHhhcCCCCCcEEEEEEcccchhhhhccCCCCcEEEEecccccceeeEEEE
Q 012675           17 IGLVDQMKEEIEFRKQMNIAELNDLDEVTRLELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQV   96 (458)
Q Consensus        17 ~~~~~~~k~~~~~q~~~n~~ef~~~d~~~r~~~eG~~~G~YVrI~i~~vP~e~~~~fdp~~PlIvggLl~~E~k~~vv~~   96 (458)
                      ..+|+....+..++..+|..   ++|++++.+.+|+.+|+||+|+|++||++++++|++++||||||||+||+++||||+
T Consensus        42 ~ri~~f~n~~~~k~~~~~~~---~~~~~~~~~~~g~~~G~YVrI~i~~vP~~~~~~~~~~~Plil~gLl~~E~k~svv~~  118 (297)
T PF04950_consen   42 SRIFQFENFKRTKKRALKEA---ELDEEEREQEEGVRPGTYVRIEISNVPCEFVENFDPSYPLILGGLLPHEQKMSVVNF  118 (297)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44566666666666666666   899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCcccccccccCCcEEEEEeeeeeeeeeeeeeecCCcceeEEeecCCCceEEEEEEeecCCCCceEEEEEeccCCC
Q 012675           97 RLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIEDRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQ  176 (458)
Q Consensus        97 rikrhrw~~~kiLKSkDpLi~s~GwRRFqt~PIyS~~d~n~R~r~lKytp~~~~c~AtfyGPi~~~~tgvlaf~~~~~~~  176 (458)
                      +|+||+| |++||||+||||||||||||||+||||++++|+||||+||+|+||||+||||||++|||||||+|++.++..
T Consensus       119 ~ikrh~~-~~~~lkSkd~li~~~G~Rrf~~~Pifs~~~~~~r~k~~k~~~~~~~~~at~ygPi~~~~~~vl~f~~~~~~~  197 (297)
T PF04950_consen  119 RIKRHRW-YEKPLKSKDPLIFSCGWRRFQTIPIFSQEDNNNRHKYEKYLPEGMHCVATFYGPITFPPTPVLAFKESSNSG  197 (297)
T ss_dssp             ------------------------------------------------------------------------------TT
T ss_pred             ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence            9999999 999999999999999999999999999999999999999999999999999999999999999999976666


Q ss_pred             CCeEEEEEEEEeeccCceeEEEeEEEeeeeeEEeecceEEeccCCChhhhccccCCeeeecccccceeeccccccccCCC
Q 012675          177 ASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQP  256 (458)
Q Consensus       177 ~~fri~atG~vl~~d~~~~IvKKlkLtG~P~KI~K~tAfIk~MF~s~lEV~~Fkga~L~TvsGiRG~IKkalgt~~~~~~  256 (458)
                      .+|||+|||+|+++|++++|+|||+|+|||+||||+|||||+||||++||+||+||+|+|+||+||+||+||||      
T Consensus       198 ~~~~l~atG~v~~~d~~~~i~Kki~L~G~P~ki~k~~a~vr~MF~~~~dv~~F~~~~l~T~~G~rG~Ik~~lgt------  271 (297)
T PF04950_consen  198 SSFRLVATGSVLNVDPDRIIVKKIKLTGYPFKIHKRTAVVRGMFFNPEDVAWFKGAELRTKSGIRGHIKESLGT------  271 (297)
T ss_dssp             TSS-B-EEEEEEEE--GGGS-B--EEEEEEEEEESSSCEECSSSSTCCHHHHS-S--BEETTS-BEEEEE-BTT------
T ss_pred             CCceEEEeeeEeCCCCcchhheeeeecCchheEECceEEhhhhcCCHHHHHhhcCCEEEeeccCCCEECeeECC------
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999998      


Q ss_pred             CCCCCCCCCeeEEEEeccccccccEEEEeceeec
Q 012675          257 KRKGGQPREGIARCTFEDRILMSDIVFMRGWADV  290 (458)
Q Consensus       257 ~~~~~~~p~G~fRatFedkI~~sDiVflrlwkrV  290 (458)
                              ||+|||+|||+|++||||||+||+||
T Consensus       272 --------~G~fka~F~~~i~~~D~V~~~lykrV  297 (297)
T PF04950_consen  272 --------HGYFKATFEDKIKQSDIVFMRLYKRV  297 (297)
T ss_dssp             --------TTBBEEEESS---SS-EEEEE-----
T ss_pred             --------CCcEEEEECCcCCCCCEEEEecCCCC
Confidence                    99999999999999999999999997

; PDB: 1WB1_D 1WB3_B 1WB2_A.

>KOG1980 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=8.4e-70  Score=572.90  Aligned_cols=228  Identities=25%  Similarity=0.404  Sum_probs=223.5

Q ss_pred             CCcEEEEEEcccchhhhhccCCCCcEEEEecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeeeeeeee
Q 012675           54 TGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVYAIE  133 (458)
Q Consensus        54 ~G~YVrI~i~~vP~e~~~~fdp~~PlIvggLl~~E~k~~vv~~rikrhrw~~~kiLKSkDpLi~s~GwRRFqt~PIyS~~  133 (458)
                      +|+||+|+|.|||.++++.|.+..+|||+|||+||++|+|+||.+++|+. |+.||||+++|||+||+|||.++|+||++
T Consensus       523 ~G~~V~v~l~nvP~~i~E~~~~~~~lvvfglL~hEhKmtV~Nfvl~r~p~-~e~Plkske~livq~G~Rrf~i~PlfSs~  601 (754)
T KOG1980|consen  523 PGQYVRVFLRNVPVSILEAIKKQLLLVVFGLLPHEHKMTVLNFVLQRHPG-YEEPLKSKEELIVQCGFRRFDINPLFSSH  601 (754)
T ss_pred             CCceEEEEeecCcHHHHHHHhhccceeeeeccchhhhheeeEEEEecCCC-CCccccccceeEEEeccceEEeccccccC
Confidence            99999999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             cCCcceeEEeecCCCceEEEEEEeecCCCCceEEEEEeccCCCCCeEEEEEEEEeeccCceeEEEeEEEeeeeeEEeecc
Q 012675          134 DRSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCKIFKKT  213 (458)
Q Consensus       134 d~n~R~r~lKytp~~~~c~AtfyGPi~~~~tgvlaf~~~~~~~~~fri~atG~vl~~d~~~~IvKKlkLtG~P~KI~K~t  213 (458)
                      +.|++|||.||.|+.+..+|||||||+|+++|||+|+..++  .+.+++|||++++|||||+|+||.+|+||||||||+.
T Consensus       602 t~ndkhK~eRfl~~~~a~vaTviaPI~F~ps~vL~FK~s~~--~~~~LiAtG~~l~~dpdRiv~KRaVLsGhPfKi~kk~  679 (754)
T KOG1980|consen  602 TPNDKHKYERFLPPDEAVVATVIAPITFGPSPVLIFKKSSD--GSLELIATGSLLNCDPDRIVAKRAVLSGHPFKIHKKY  679 (754)
T ss_pred             CccchhhhhhhcCccceEEEEEEeccccCCcceEEEEeCCC--cccceeeeeeeeccCCcceeEeeeeecCCCceeeeee
Confidence            99999999999999999999999999999999999998765  4789999999999999999999999999999999999


Q ss_pred             eEEeccCCChhhhccccCCeeeecccccceeeccccccccCCCCCCCCCCCCeeEEEEeccccccccEEEEeceeecccC
Q 012675          214 ALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWADVEIP  293 (458)
Q Consensus       214 AfIk~MF~s~lEV~~Fkga~L~TvsGiRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~~sDiVflrlwkrV~p~  293 (458)
                      |+|||||||++||.||+|++|+|++|++||||+||||              ||+|||+|+++|+.+|+|+|+|||||||.
T Consensus       680 v~VRYMFFn~EDV~wFKpIqL~Tk~gR~GhIKEplGT--------------HG~fKc~FdgkLksqDtV~MsLYKRvfP~  745 (754)
T KOG1980|consen  680 VVVRYMFFNREDVEWFKPIQLYTKSGRTGHIKEPLGT--------------HGYFKCYFDGKLKSQDTVMMSLYKRVFPK  745 (754)
T ss_pred             EEEeeecCCHhHeeeecceeeeccccccccccccccC--------------cceeEEEecCcccccchHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999              99999999999999999999999999999


Q ss_pred             ccccc
Q 012675          294 RFYNP  298 (458)
Q Consensus       294 ~fy~p  298 (458)
                      |-|++
T Consensus       746 ~~y~~  750 (754)
T KOG1980|consen  746 WTYWN  750 (754)
T ss_pred             ccccc
Confidence            99944

>COG5177 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.7e-54  Score=446.20  Aligned_cols=225  Identities=22%  Similarity=0.279  Sum_probs=215.4

Q ss_pred             CCCCcEEEEEEcccchhhhhcc-CCCCcEEEEecccccceeeEEEEEEEecCcccccccccCCcEEEEEeeeeeeeeeee
Q 012675           52 FRTGTYLRMEIHDVPFEMVEYF-DPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKVLKSRDPIIVSIGWRRFQTIPVY  130 (458)
Q Consensus        52 ~~~G~YVrI~i~~vP~e~~~~f-dp~~PlIvggLl~~E~k~~vv~~rikrhrw~~~kiLKSkDpLi~s~GwRRFqt~PIy  130 (458)
                      ..+|+.|||.|. +|..+++.+ +|..-|+|+|||.||++.+|.||++.||.. |+.||+|+++|++++|.|||.++|+|
T Consensus       533 a~~G~~vri~lr-~p~~l~E~~~~p~~llvvygll~yE~k~tV~nFs~~rh~e-ye~P~~s~E~~vvq~G~rr~~i~Pl~  610 (769)
T COG5177         533 APDGQMVRIKLR-FPKFLYEGLIEPQILLVVYGLLEYEDKKTVHNFSLQRHFE-YEVPLKSEESMVVQLGHRRVDICPLI  610 (769)
T ss_pred             CCCCcEEEEEEe-ccHHHHhhhcccceeeeeeehhhhcchhhhhhhhhhhhhc-ccCCCCcccceeeeeccceEEEeehh
Confidence            678999999999 999999987 566677889999999999999999999999 99999999999999999999999999


Q ss_pred             eeec--CCcceeEEeecCCCceEEEEEEeecCCCCceEEEEEeccCCCCCeEEEEEEEEeeccCceeEEEeEEEeeeeeE
Q 012675          131 AIED--RSGRHRMLKYTPEHMHCLATFWGPLAPPQTGVVAVQNLSNNQASFRIAATAVVLEFNHEVKIKKKIKLVGYPCK  208 (458)
Q Consensus       131 S~~d--~n~R~r~lKytp~~~~c~AtfyGPi~~~~tgvlaf~~~~~~~~~fri~atG~vl~~d~~~~IvKKlkLtG~P~K  208 (458)
                      |...  +|+-|+|.||+|+....+|||+|||.|+++|+|+|+.......+.+++|||+.+++|++++|.||.+|||||||
T Consensus       611 s~~s~s~Nn~qKy~r~l~p~~~~vas~I~Pi~Fg~spvi~fkkS~~d~~s~~l~a~g~~~n~d~~rviakrAvLtGhPFk  690 (769)
T COG5177         611 SKGSNSPNNNQKYFRRLKPLESGVASFIGPISFGLSPVIIFKKSALDELSATLLASGGMNNFDGDRVIAKRAVLTGHPFK  690 (769)
T ss_pred             ccCCCCCcchHHHHhhcCccceeeeEEEcceeccCcceEEEccCccchhhhhhhhcccccccCcchhhhhhhhhcCCCcc
Confidence            9854  46789999999999999999999999999999999987666678999999999999999999999999999999


Q ss_pred             EeecceEEeccCCChhhhccccCCeeeecccccceeeccccccccCCCCCCCCCCCCeeEEEEeccccccccEEEEecee
Q 012675          209 IFKKTALIKDMFTSDLEVAQCEGKEVRTVSGIRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWA  288 (458)
Q Consensus       209 I~K~tAfIk~MF~s~lEV~~Fkga~L~TvsGiRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~~sDiVflrlwk  288 (458)
                      +||+.++||||||||+||.||++++|.|++|+.|.||+||||              ||+|||||+++|..+|+|.|+||+
T Consensus       691 ~hK~~vtvryMFf~pEdV~wFk~Iqlftk~grtGfIKeplGT--------------hGyFKatF~gki~~qD~VaMSLYK  756 (769)
T COG5177         691 NHKRYVTVRYMFFSPEDVMWFKNIQLFTKRGRTGFIKEPLGT--------------HGYFKATFSGKIKSQDKVAMSLYK  756 (769)
T ss_pred             cceeEEEEeeecCCHhHeeeecchhhhhhcCccceecccccC--------------cceeeEEecCcccccchhhHHHHH
Confidence            999999999999999999999999999999999999999999              999999999999999999999999


Q ss_pred             eccc
Q 012675          289 DVEI  292 (458)
Q Consensus       289 rV~p  292 (458)
                      |+||
T Consensus       757 Rm~p  760 (769)
T COG5177         757 RMFP  760 (769)
T ss_pred             Hhcc
Confidence            9996

>KOG1951 consensus GTP-binding protein AARP2 involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=2.4e-14  Score=125.65  Aligned_cols=101  Identities=40%  Similarity=0.609  Sum_probs=96.4

Q ss_pred             CCChhhHhhCCCCCCCCCCCCCCCcccccccc--ccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012675          349 VIPKSLQAALPFESKPKDIPGRKRPLLENRRA--VVMEPHERKVHVLFQQLQLIRNEKMKKRKLKQQHRKKEIEAERAKD  426 (458)
Q Consensus       349 ~iPk~lq~~LPf~~kpk~~~~~~~~~~~~~ra--vv~~~~ekk~~~l~~~l~ti~~~k~~k~~~k~~~~~~~~~~~~~k~  426 (458)
                      .||++||++|||+|+|+.+.++++..++.+||  ||+.|+|+|+++++|++.|+++++..++++.+..+++++.++.++.
T Consensus         1 ~iPKalqk~LPfkskpka~~~~k~~l~~~~r~~~vv~~p~e~K~~~~~~~v~t~~~~~~qk~K~~~~~krk~~~e~k~~~   80 (115)
T KOG1951|consen    1 MIPKALQKALPFKSKPKAAKKRKRPLQDLQRADEVVAKPRERKARAVIDAVETARSFKRQKAKKTKKKKRKEYREKKAKK   80 (115)
T ss_pred             CccHHHHHhCCccccchhhccccccccchhhcchhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999997  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 012675          427 EQLTRKRQREERRERYREQDKLM  449 (458)
Q Consensus       427 e~~~~~~~k~~~k~~~r~~~k~~  449 (458)
                      ++....+.++.+++.|+..|+.-
T Consensus        81 ~~~~~~r~~~kkr~~~kk~~k~~  103 (115)
T KOG1951|consen   81 EEPLEQREKEKKREGPKKVGKST  103 (115)
T ss_pred             hhhhhhhHHHHHHhhhcccchhH
Confidence            99999999999999998887653

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=95.60  E-value=0.011  Score=62.02  Aligned_cols=221  Identities=16%  Similarity=0.224  Sum_probs=140.4

Q ss_pred             HhcCCCHHHHH--------hhcCCCCCcEEEEEEcccchhhhhccCCCCcEEEEecccccceeeEEEEEEEecCcccccc
Q 012675           37 ELNDLDEVTRL--------ELEGFRTGTYLRMEIHDVPFEMVEYFDPCHPVLVGGIGLGEQNVGYMQVRLKRHRWWHKKV  108 (458)
Q Consensus        37 ef~~~d~~~r~--------~~eG~~~G~YVrI~i~~vP~e~~~~fdp~~PlIvggLl~~E~k~~vv~~rikrhrw~~~ki  108 (458)
                      ||-.|.+..|+        .+..+..|..+-+.+......+++.=      |+ |-..+=...-.+-..++.-++ |.++
T Consensus       236 E~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRg------i~-~~pg~Lk~~~avl~~vepI~y-fr~~  307 (522)
T KOG0461|consen  236 EFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERG------IC-GPPGTLKSTKAVLATVEPIQY-FRKS  307 (522)
T ss_pred             eecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhcc------cc-CCCcccceeeeeeEeecchHH-Hhhh
Confidence            45555555432        23445566666666665555554431      11 111111223355577888889 9999


Q ss_pred             cccCCcEEEEEeeeeeeeeeeeeeecCC---------cceeEE-eecCC-CceE-----EEEEEeecCCCCceEEEEEec
Q 012675          109 LKSRDPIIVSIGWRRFQTIPVYAIEDRS---------GRHRML-KYTPE-HMHC-----LATFWGPLAPPQTGVVAVQNL  172 (458)
Q Consensus       109 LKSkDpLi~s~GwRRFqt~PIyS~~d~n---------~R~r~l-Kytp~-~~~c-----~AtfyGPi~~~~tgvlaf~~~  172 (458)
                      |+|+.-+-+++|+---...-.|..+..+         ...-++ -.+|. -.+|     +.+|=-|+..|.-..++-...
T Consensus       308 i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s~~i~s~l  387 (522)
T KOG0461|consen  308 INSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEYSNPIMSAL  387 (522)
T ss_pred             hhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCcccccHHHHhh
Confidence            9999999999999765544444432211         011112 12333 2345     667888988876322222222


Q ss_pred             c--CCCCCeEEEEEEEEeeccCce----------eEEEeEEEeeeeeEEeec-ceEEeccCCChhhhccccCCeeeeccc
Q 012675          173 S--NNQASFRIAATAVVLEFNHEV----------KIKKKIKLVGYPCKIFKK-TALIKDMFTSDLEVAQCEGKEVRTVSG  239 (458)
Q Consensus       173 ~--~~~~~fri~atG~vl~~d~~~----------~IvKKlkLtG~P~KI~K~-tAfIk~MF~s~lEV~~Fkga~L~TvsG  239 (458)
                      .  ....+-|++.+|.+.-.-+++          .|.||=-=.|+--++.+. .+.+++||--.--..-|.|-.+.+.+|
T Consensus       388 d~d~h~~~CRlAF~Gi~~~~l~~~~y~~~~LP~lrifkrK~k~G~veRv~~d~svI~~~lFK~etn~dlfvG~~v~lStG  467 (522)
T KOG0461|consen  388 DEDQHGSGCRLAFSGIFSQILPESKYNGKNLPPLRIFKRKCKKGHVERVEKDFSVICTGLFKAETNFDLFVGFQVCLSTG  467 (522)
T ss_pred             hhhcCCCceEEEeeeehhhhCcccccccccCCchhhhhhhhcccchhhhhccHHHHHhhhhccccccceeeeeEEEeccC
Confidence            1  234678999999987655553          334444445555555444 356789999888888999999999999


Q ss_pred             ccceeeccccccccCCCCCCCCCCCCeeEEEEeccccccc
Q 012675          240 IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMS  279 (458)
Q Consensus       240 iRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~~s  279 (458)
                      -+|.|-.+.|.              .|.||.||-++|...
T Consensus       468 e~G~Ie~aFGq--------------sgKf~itf~~~lspe  493 (522)
T KOG0461|consen  468 ERGKIEGAFGQ--------------SGKFRITFAEKLSPE  493 (522)
T ss_pred             CccceeccccC--------------cceEEEEecccCChh
Confidence            99999999998              899999999998653

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.41  E-value=0.85  Score=52.21  Aligned_cols=30  Identities=33%  Similarity=0.429  Sum_probs=13.9

Q ss_pred             hHhhCC----CCCCCCCCCCCCCccccccccccC
Q 012675          354 LQAALP----FESKPKDIPGRKRPLLENRRAVVM  383 (458)
Q Consensus       354 lq~~LP----f~~kpk~~~~~~~~~~~~~ravv~  383 (458)
                      .++.||    |..|.|..-.+..-.+..+|.+++
T Consensus       304 p~kklP~~~TFEDKrkeNy~kGqaELerRRq~le  337 (1118)
T KOG1029|consen  304 PPKKLPAPVTFEDKRKENYEKGQAELERRRQALE  337 (1118)
T ss_pred             ccccCCCCcchhhhhHHhHhhhhHHHHHHHHHHH
Confidence            344555    777666443333333333444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	458
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-07

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 49.8 bits (118), Expect = 3e-07
 Identities = 12/54 (22%), Positives = 32/54 (59%)

Query: 403 EKMKKRKLKQQHRKKEIEAERAKDEQLTRKRQREERRERYREQDKLMKKIRRHS 456
           E ++K + +Q+ R +E++A     EQ  R++ +++  E  + Q + ++K + ++
Sbjct: 85  ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	458
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.82

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.82  E-value=5.9e-21  Score=198.50  Aligned_cols=167  Identities=14%  Similarity=0.157  Sum_probs=132.0

Q ss_pred             cccccccCCcEEEEEeeeeeeeeeeeee---ecCCcceeEEeecCC--CceEEEEEEeecCCCCceEEEEEeccCCCCCe
Q 012675          105 HKKVLKSRDPIIVSIGWRRFQTIPVYAI---EDRSGRHRMLKYTPE--HMHCLATFWGPLAPPQTGVVAVQNLSNNQASF  179 (458)
Q Consensus       105 ~~kiLKSkDpLi~s~GwRRFqt~PIyS~---~d~n~R~r~lKytp~--~~~c~AtfyGPi~~~~tgvlaf~~~~~~~~~f  179 (458)
                      ++.+|++..++.+++|..+-.+....-.   -|.++.+..-++...  ...|...+-.|++..+-+-++++...+.....
T Consensus       303 ~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~~  382 (482)
T 1wb1_A          303 FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTTL  382 (482)
T ss_dssp             CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTSC
T ss_pred             CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccCc
Confidence            3579999999999999999877765433   232333332233333  34677788899988766666676522212346


Q ss_pred             EEEEEEEEeeccCceeEEEeEEEeeeeeE-----EeecceEEeccCCChhhhccccCCeeeecccc-cceeecccccccc
Q 012675          180 RIAATAVVLEFNHEVKIKKKIKLVGYPCK-----IFKKTALIKDMFTSDLEVAQCEGKEVRTVSGI-RGQVKKAAKEEIG  253 (458)
Q Consensus       180 ri~atG~vl~~d~~~~IvKKlkLtG~P~K-----I~K~tAfIk~MF~s~lEV~~Fkga~L~TvsGi-RG~IKkalgt~~~  253 (458)
                      |.+|.|.|+++.+    +++++|...+.|     ++++||++++||++..|++||.|.+|+|++|. +|+|+.++|+   
T Consensus       383 ~tvg~G~v~~~~~----~~~l~v~k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~fg~---  455 (482)
T 1wb1_A          383 RIXGHGLIEEFKP----IKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGT---  455 (482)
T ss_dssp             CCCCBCCEEECCC----GGGSCCCCCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTT---
T ss_pred             eEeeEEEEEeccc----chhceeeehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccCCC---
Confidence            8999999999877    455666555444     78899999999999999999999999999999 9999999999   


Q ss_pred             CCCCCCCCCCCCeeEEEEeccccccccEEEEeceee
Q 012675          254 NQPKRKGGQPREGIARCTFEDRILMSDIVFMRGWAD  289 (458)
Q Consensus       254 ~~~~~~~~~~p~G~fRatFedkI~~sDiVflrlwkr  289 (458)
                                 +|.|||+|++.|.+||+|||++|+|
T Consensus       456 -----------~G~~~~~f~~~~~~~d~v~~~~~~~  480 (482)
T 1wb1_A          456 -----------KGLLTAEFSGNVENRDKVILNRLRR  480 (482)
T ss_dssp             -----------TTBBCCCBSSCCCSSCEEEEECCCS
T ss_pred             -----------CceEEEEecCCCCCCCeeeeehhhc
Confidence                       9999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	458
d1wb1a2	79	Elongation factor SelB, domains 2 and 4 {Methanoco	95.36

>d1wb1a2 b.43.3.1 (A:390-468) Elongation factor SelB, domains 2 and 4 {Methanococcus maripaludis [TaxId: 39152]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor SelB, domains 2 and 4
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.36  E-value=0.0061  Score=47.50  Aligned_cols=67  Identities=21%  Similarity=0.306  Sum_probs=63.3

Q ss_pred             eeEEeecceEEeccCCChhhhccccCCeeeeccc-ccceeeccccccccCCCCCCCCCCCCeeEEEEeccccccccEEEE
Q 012675          206 PCKIFKKTALIKDMFTSDLEVAQCEGKEVRTVSG-IRGQVKKAAKEEIGNQPKRKGGQPREGIARCTFEDRILMSDIVFM  284 (458)
Q Consensus       206 P~KI~K~tAfIk~MF~s~lEV~~Fkga~L~TvsG-iRG~IKkalgt~~~~~~~~~~~~~p~G~fRatFedkI~~sDiVfl  284 (458)
                      -.+|-|..++|-++=.|..-..+-.|-++++.++ +-|.||-..||              .|+.-|-|++.+...|.|.|
T Consensus         7 ~i~i~K~r~~IegLA~sK~~aEkLIGe~v~i~~k~i~Gkik~TfGT--------------kG~l~adF~geV~n~dkV~L   72 (79)
T d1wb1a2           7 KVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGT--------------KGLLTAEFSGNVENRDKVIL   72 (79)
T ss_dssp             EEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTT--------------TTBBCCCBSSCCCSSCEEEE
T ss_pred             cEEEecCcEEeeecccchhHHHhhcCcEEEecCCceEEEEeccccC--------------ceEEEEEeccccCCCceehh
Confidence            3688999999999999999999999999999999 99999999999              99999999999999999998


Q ss_pred             ec
Q 012675          285 RG  286 (458)
Q Consensus       285 rl  286 (458)
                      .-
T Consensus        73 ~R   74 (79)
T d1wb1a2          73 NR   74 (79)
T ss_dssp             EC
T ss_pred             hh
Confidence            53